locus-tag class description YPDSF_0001 PF00308 Bacterial dnaA protein YPDSF_0001 PF08299 Bacterial dnaA protein helix-turn-helix YPDSF_0001 PF11638 DnaA N-terminal domain YPDSF_0002 PF02767 DNA polymerase III beta subunit, central domain YPDSF_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain YPDSF_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain YPDSF_0003 PF02463 RecF/RecN/SMC N terminal domain YPDSF_0004 PF00204 DNA gyrase B YPDSF_0004 PF00986 DNA gyrase B subunit, carboxyl terminus YPDSF_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_0004 PF01751 Toprim domain YPDSF_0004 PF18053 DNA gyrase B subunit insert domain YPDSF_0006 PF13276 HTH-like domain YPDSF_0006 PF00665 Integrase core domain YPDSF_0006 PF13333 Integrase core domain YPDSF_0007 PF02423 Ornithine cyclodeaminase/mu-crystallin family YPDSF_0008 PF00291 Pyridoxal-phosphate dependent enzyme YPDSF_0008 PF13291 ACT domain YPDSF_0009 PF07676 WD40-like Beta Propeller Repeat YPDSF_0009 PF12566 Protein of unknown function (DUF3748) YPDSF_0010 PF07676 WD40-like Beta Propeller Repeat YPDSF_0010 PF12566 Protein of unknown function (DUF3748) YPDSF_0011 PF07119 Protein of unknown function (DUF1375) YPDSF_0012 PF00011 Hsp20/alpha crystallin family YPDSF_0013 PF00011 Hsp20/alpha crystallin family YPDSF_0014 PF06826 Predicted Permease Membrane Region YPDSF_0014 PF02080 TrkA-C domain YPDSF_0015 PF00155 Aminotransferase class I and II YPDSF_0016 PF00128 Alpha amylase, catalytic domain YPDSF_0017 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPDSF_0017 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPDSF_0019 PF13488 Glycine zipper YPDSF_0019 PF00691 OmpA family YPDSF_0021 PF03352 Methyladenine glycosylase YPDSF_0022 PF02091 Glycyl-tRNA synthetase alpha subunit YPDSF_0023 PF02092 Glycyl-tRNA synthetase beta subunit YPDSF_0023 PF05746 DALR anticodon binding domain YPDSF_0024 PF11254 Protein of unknown function (DUF3053) YPDSF_0025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPDSF_0025 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPDSF_0025 PF02378 Phosphotransferase system, EIIC YPDSF_0026 PF08125 Mannitol dehydrogenase C-terminal domain YPDSF_0026 PF01232 Mannitol dehydrogenase Rossmann domain YPDSF_0027 PF05068 Mannitol repressor YPDSF_0028 PF10928 Protein of unknown function (DUF2810) YPDSF_0031 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_0031 PF00672 HAMP domain YPDSF_0031 PF02203 Tar ligand binding domain homologue YPDSF_0032 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPDSF_0032 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPDSF_0033 PF02634 FdhD/NarQ family YPDSF_0034 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPDSF_0034 PF00384 Molybdopterin oxidoreductase YPDSF_0034 PF01568 Molydopterin dinucleotide binding domain YPDSF_0035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPDSF_0035 PF00384 Molybdopterin oxidoreductase YPDSF_0035 PF01568 Molydopterin dinucleotide binding domain YPDSF_0036 PF09163 Formate dehydrogenase N, transmembrane YPDSF_0036 PF13247 4Fe-4S dicluster domain YPDSF_0037 PF01292 Prokaryotic cytochrome b561 YPDSF_0038 PF04216 Protein involved in formate dehydrogenase formation YPDSF_0039 PF12390 Selenocysteine synthase N terminal YPDSF_0039 PF03841 L-seryl-tRNA selenium transferase YPDSF_0040 PF00009 Elongation factor Tu GTP binding domain YPDSF_0040 PF09107 Elongation factor SelB, winged helix YPDSF_0040 PF09106 Elongation factor SelB, winged helix YPDSF_0040 PF03144 Elongation factor Tu domain 2 YPDSF_0043 PF00872 Transposase, Mutator family YPDSF_0046 PF07690 Major Facilitator Superfamily YPDSF_0047 PF13333 Integrase core domain YPDSF_0047 PF13276 HTH-like domain YPDSF_0047 PF00665 Integrase core domain YPDSF_0048 PF08220 DeoR-like helix-turn-helix domain YPDSF_0048 PF00455 DeoR C terminal sensor domain YPDSF_0049 PF01694 Rhomboid family YPDSF_0049 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YPDSF_0050 PF00581 Rhodanese-like domain YPDSF_0051 PF00196 Bacterial regulatory proteins, luxR family YPDSF_0051 PF17874 MalT-like TPR region YPDSF_0052 PF00343 Carbohydrate phosphorylase YPDSF_0053 PF02446 4-alpha-glucanotransferase YPDSF_0054 PF01106 NifU-like domain YPDSF_0054 PF01521 Iron-sulphur cluster biosynthesis YPDSF_0055 PF00156 Phosphoribosyl transferase domain YPDSF_0056 PF00561 alpha/beta hydrolase fold YPDSF_0057 PF07338 Protein of unknown function (DUF1471) YPDSF_0058 PF09012 FeoC like transcriptional regulator YPDSF_0059 PF07670 Nucleoside recognition YPDSF_0059 PF17910 FeoB cytosolic helical domain YPDSF_0059 PF07664 Ferrous iron transport protein B C terminus YPDSF_0059 PF02421 Ferrous iron transport protein B YPDSF_0060 PF04023 FeoA domain YPDSF_0061 PF09371 Tex-like protein N-terminal domain YPDSF_0061 PF16921 Tex protein YqgF-like domain YPDSF_0061 PF17674 HHH domain YPDSF_0061 PF00575 S1 RNA binding domain YPDSF_0062 PF01272 Transcription elongation factor, GreA/GreB, C-term YPDSF_0062 PF03449 Transcription elongation factor, N-terminal YPDSF_0063 PF00072 Response regulator receiver domain YPDSF_0063 PF00486 Transcriptional regulatory protein, C terminal YPDSF_0064 PF00672 HAMP domain YPDSF_0064 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_0064 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_0065 PF01293 Phosphoenolpyruvate carboxykinase YPDSF_0066 PF01430 Hsp33 protein YPDSF_0067 PF01479 S4 domain YPDSF_0068 PF13419 Haloacid dehalogenase-like hydrolase YPDSF_0069 PF07095 Intracellular growth attenuator protein IgaA YPDSF_0070 PF00293 NUDIX domain YPDSF_0071 PF00905 Penicillin binding protein transpeptidase domain YPDSF_0071 PF00912 Transglycosylase YPDSF_0071 PF17092 Penicillin-binding protein OB-like domain YPDSF_0077 PF03958 Bacterial type II/III secretion system short domain YPDSF_0077 PF00263 Bacterial type II and III secretion system protein YPDSF_0078 PF01202 Shikimate kinase YPDSF_0079 PF01761 3-dehydroquinate synthase YPDSF_0080 PF05036 Sporulation related domain YPDSF_0081 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPDSF_0082 PF00834 Ribulose-phosphate 3 epimerase family YPDSF_0083 PF13419 Haloacid dehalogenase-like hydrolase YPDSF_0084 PF00579 tRNA synthetases class I (W and Y) YPDSF_0085 PF10414 Sirohaem synthase dimerisation region YPDSF_0085 PF14824 Sirohaem biosynthesis protein central YPDSF_0085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPDSF_0086 PF01226 Formate/nitrite transporter YPDSF_0087 PF13806 Rieske-like [2Fe-2S] domain YPDSF_0088 PF18267 Rubredoxin NAD+ reductase C-terminal domain YPDSF_0088 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPDSF_0088 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPDSF_0088 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPDSF_0088 PF04324 BFD-like [2Fe-2S] binding domain YPDSF_0089 PF07969 Amidohydrolase family YPDSF_0090 PF07690 Major Facilitator Superfamily YPDSF_0092 PF00356 Bacterial regulatory proteins, lacI family YPDSF_0095 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPDSF_0096 PF05872 Bacterial protein of unknown function (DUF853) YPDSF_0097 PF00117 Glutamine amidotransferase class-I YPDSF_0098 PF00202 Aminotransferase class-III YPDSF_0099 PF12805 FUSC-like inner membrane protein yccS YPDSF_0100 PF13545 Crp-like helix-turn-helix domain YPDSF_0100 PF00027 Cyclic nucleotide-binding domain YPDSF_0101 PF02566 OsmC-like protein YPDSF_0103 PF00485 Phosphoribulokinase / Uridine kinase family YPDSF_0104 PF06794 Uncharacterised protein family (UPF0270) YPDSF_0105 PF00561 alpha/beta hydrolase fold YPDSF_0106 PF01810 LysE type translocator YPDSF_0107 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPDSF_0108 PF00005 ABC transporter YPDSF_0109 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_0110 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YPDSF_0113 PF00535 Glycosyl transferase family 2 YPDSF_0114 PF00005 ABC transporter YPDSF_0114 PF12848 ABC transporter YPDSF_0115 PF02525 Flavodoxin-like fold YPDSF_0116 PF00999 Sodium/hydrogen exchanger family YPDSF_0116 PF02254 TrkA-N domain YPDSF_0117 PF09526 Probable metal-binding protein (DUF2387) YPDSF_0118 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPDSF_0119 PF04102 SlyX YPDSF_0120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPDSF_0120 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPDSF_0121 PF08348 YheO-like PAS domain YPDSF_0121 PF13309 HTH domain YPDSF_0122 PF02635 DsrE/DsrF-like family YPDSF_0123 PF02635 DsrE/DsrF-like family YPDSF_0124 PF04077 DsrH like protein YPDSF_0125 PF00164 Ribosomal protein S12/S23 YPDSF_0126 PF00177 Ribosomal protein S7p/S5e YPDSF_0127 PF00009 Elongation factor Tu GTP binding domain YPDSF_0127 PF00679 Elongation factor G C-terminus YPDSF_0127 PF14492 Elongation Factor G, domain II YPDSF_0127 PF03764 Elongation factor G, domain IV YPDSF_0127 PF03144 Elongation factor Tu domain 2 YPDSF_0128 PF00009 Elongation factor Tu GTP binding domain YPDSF_0128 PF03144 Elongation factor Tu domain 2 YPDSF_0128 PF03143 Elongation factor Tu C-terminal domain YPDSF_0129 PF01797 Transposase IS200 like YPDSF_0130 PF04324 BFD-like [2Fe-2S] binding domain YPDSF_0131 PF00210 Ferritin-like domain YPDSF_0132 PF00338 Ribosomal protein S10p/S20e YPDSF_0133 PF00297 Ribosomal protein L3 YPDSF_0134 PF00573 Ribosomal protein L4/L1 family YPDSF_0135 PF00276 Ribosomal protein L23 YPDSF_0136 PF03947 Ribosomal Proteins L2, C-terminal domain YPDSF_0136 PF00181 Ribosomal Proteins L2, RNA binding domain YPDSF_0137 PF00203 Ribosomal protein S19 YPDSF_0138 PF00237 Ribosomal protein L22p/L17e YPDSF_0139 PF00189 Ribosomal protein S3, C-terminal domain YPDSF_0139 PF07650 KH domain YPDSF_0140 PF00252 Ribosomal protein L16p/L10e YPDSF_0141 PF00831 Ribosomal L29 protein YPDSF_0142 PF00366 Ribosomal protein S17 YPDSF_0143 PF00238 Ribosomal protein L14p/L23e YPDSF_0144 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YPDSF_0144 PF00467 KOW motif YPDSF_0145 PF00673 ribosomal L5P family C-terminus YPDSF_0145 PF00281 Ribosomal protein L5 YPDSF_0146 PF00253 Ribosomal protein S14p/S29e YPDSF_0147 PF00410 Ribosomal protein S8 YPDSF_0148 PF00347 Ribosomal protein L6 YPDSF_0149 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YPDSF_0150 PF03719 Ribosomal protein S5, C-terminal domain YPDSF_0150 PF00333 Ribosomal protein S5, N-terminal domain YPDSF_0151 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YPDSF_0152 PF00344 SecY translocase YPDSF_0153 PF00416 Ribosomal protein S13/S18 YPDSF_0154 PF00411 Ribosomal protein S11 YPDSF_0155 PF00163 Ribosomal protein S4/S9 N-terminal domain YPDSF_0155 PF01479 S4 domain YPDSF_0156 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YPDSF_0156 PF01000 RNA polymerase Rpb3/RpoA insert domain YPDSF_0156 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YPDSF_0157 PF01196 Ribosomal protein L17 YPDSF_0158 PF13411 MerR HTH family regulatory protein YPDSF_0159 PF03889 Alternative ribosome-rescue factor A YPDSF_0160 PF01741 Large-conductance mechanosensitive channel, MscL YPDSF_0161 PF02254 TrkA-N domain YPDSF_0161 PF02080 TrkA-C domain YPDSF_0162 PF01189 16S rRNA methyltransferase RsmB/F YPDSF_0162 PF01029 NusB family YPDSF_0163 PF02911 Formyl transferase, C-terminal domain YPDSF_0163 PF00551 Formyl transferase YPDSF_0164 PF01327 Polypeptide deformylase YPDSF_0165 PF17782 DprA winged helix domain YPDSF_0165 PF02481 DNA recombination-mediator protein A YPDSF_0166 PF04361 Protein of unknown function (DUF494) YPDSF_0167 PF01396 Topoisomerase DNA binding C4 zinc finger YPDSF_0168 PF01300 Telomere recombination YPDSF_0169 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YPDSF_0169 PF08501 Shikimate dehydrogenase substrate binding domain YPDSF_0169 PF01488 Shikimate / quinate 5-dehydrogenase YPDSF_0170 PF00132 Bacterial transferase hexapeptide (six repeats) YPDSF_0171 PF04204 Homoserine O-succinyltransferase YPDSF_0173 PF01274 Malate synthase YPDSF_0174 PF00463 Isocitrate lyase family YPDSF_0175 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YPDSF_0176 PF09339 IclR helix-turn-helix domain YPDSF_0176 PF01614 Bacterial transcriptional regulator YPDSF_0177 PF00809 Pterin binding enzyme YPDSF_0177 PF02574 Homocysteine S-methyltransferase YPDSF_0177 PF02310 B12 binding domain YPDSF_0177 PF02965 Vitamin B12 dependent methionine synthase, activation domain YPDSF_0177 PF02607 B12 binding domain YPDSF_0180 PF17287 POTRA domain YPDSF_0180 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPDSF_0180 PF08479 POTRA domain, ShlB-type YPDSF_0181 PF01842 ACT domain YPDSF_0181 PF00696 Amino acid kinase family YPDSF_0182 PF00342 Phosphoglucose isomerase YPDSF_0183 PF06146 Phosphate-starvation-inducible E YPDSF_0184 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_0185 PF14785 Maltose transport system permease protein MalF P2 domain YPDSF_0185 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_0186 PF01547 Bacterial extracellular solute-binding protein YPDSF_0188 PF17912 MalK OB fold domain YPDSF_0188 PF00005 ABC transporter YPDSF_0189 PF02264 LamB porin YPDSF_0190 PF07148 Maltose operon periplasmic protein precursor (MalM) YPDSF_0192 PF05638 Type VI secretion system effector, Hcp YPDSF_0197 PF13276 HTH-like domain YPDSF_0197 PF00665 Integrase core domain YPDSF_0197 PF13333 Integrase core domain YPDSF_0205 PF10431 C-terminal, D2-small domain, of ClpB protein YPDSF_0205 PF17871 AAA lid domain YPDSF_0205 PF07724 AAA domain (Cdc48 subfamily) YPDSF_0205 PF00004 ATPase family associated with various cellular activities (AAA) YPDSF_0212 PF04717 Type VI secretion system, phage-baseplate injector YPDSF_0215 PF05593 RHS Repeat YPDSF_0215 PF03527 RHS protein YPDSF_0215 PF14220 Domain of unknown function (DUF4329) YPDSF_0220 PF04717 Type VI secretion system, phage-baseplate injector YPDSF_0222 PF05593 RHS Repeat YPDSF_0222 PF03527 RHS protein YPDSF_0225 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPDSF_0225 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPDSF_0226 PF12833 Helix-turn-helix domain YPDSF_0226 PF02311 AraC-like ligand binding domain YPDSF_0227 PF05025 RbsD / FucU transport protein family YPDSF_0228 PF00294 pfkB family carbohydrate kinase YPDSF_0230 PF03358 NADPH-dependent FMN reductase YPDSF_0231 PF09084 NMT1/THI5 like YPDSF_0232 PF00296 Luciferase-like monooxygenase YPDSF_0233 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_0234 PF00005 ABC transporter YPDSF_0235 PF04221 RelB antitoxin YPDSF_0236 PF00860 Permease family YPDSF_0237 PF00999 Sodium/hydrogen exchanger family YPDSF_0239 PF03279 Bacterial lipid A biosynthesis acyltransferase YPDSF_0241 PF00005 ABC transporter YPDSF_0242 PF02653 Branched-chain amino acid transport system / permease component YPDSF_0244 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPDSF_0244 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPDSF_0245 PF01380 SIS domain YPDSF_0245 PF00571 CBS domain YPDSF_0246 PF02798 Glutathione S-transferase, N-terminal domain YPDSF_0249 PF01797 Transposase IS200 like YPDSF_0250 PF00313 'Cold-shock' DNA-binding domain YPDSF_0251 PF00313 'Cold-shock' DNA-binding domain YPDSF_0253 PF05433 Glycine zipper 2TM domain YPDSF_0254 PF00753 Metallo-beta-lactamase superfamily YPDSF_0255 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YPDSF_0255 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPDSF_0256 PF02627 Carboxymuconolactone decarboxylase family YPDSF_0257 PF07690 Major Facilitator Superfamily YPDSF_0260 PF02954 Bacterial regulatory protein, Fis family YPDSF_0261 PF01207 Dihydrouridine synthase (Dus) YPDSF_0263 PF00474 Sodium:solute symporter family YPDSF_0264 PF06196 Protein of unknown function (DUF997) YPDSF_0265 PF00289 Biotin carboxylase, N-terminal domain YPDSF_0265 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPDSF_0265 PF02785 Biotin carboxylase C-terminal domain YPDSF_0266 PF00364 Biotin-requiring enzyme YPDSF_0267 PF01220 Dehydroquinase class II YPDSF_0268 PF01794 Ferric reductase like transmembrane component YPDSF_0269 PF00174 Oxidoreductase molybdopterin binding domain YPDSF_0270 PF00107 Zinc-binding dehydrogenase YPDSF_0270 PF08240 Alcohol dehydrogenase GroES-like domain YPDSF_0271 PF00563 EAL domain YPDSF_0271 PF17157 Gammaproteobacterial periplasmic sensor domain YPDSF_0271 PF00990 Diguanylate cyclase, GGDEF domain YPDSF_0273 PF04085 rod shape-determining protein MreC YPDSF_0274 PF04093 rod shape-determining protein MreD YPDSF_0275 PF02545 Maf-like protein YPDSF_0276 PF10150 Ribonuclease E/G family YPDSF_0276 PF00575 S1 RNA binding domain YPDSF_0277 PF13116 Protein of unknown function YPDSF_0277 PF13502 AsmA-like C-terminal region YPDSF_0278 PF00795 Carbon-nitrogen hydrolase YPDSF_0279 PF01523 Putative modulator of DNA gyrase YPDSF_0280 PF14431 YwqJ-like deaminase YPDSF_0280 PF18807 Tripartite Tc toxins repeat YPDSF_0281 PF18807 Tripartite Tc toxins repeat YPDSF_0281 PF05785 Rho-activating domain of cytotoxic necrotizing factor YPDSF_0285 PF12255 Insecticide toxin TcdB middle/C-terminal region YPDSF_0285 PF03534 Salmonella virulence plasmid 65kDa B protein YPDSF_0285 PF12256 Insecticide toxin TcdB middle/N-terminal region YPDSF_0286 PF18413 Neuraminidase-like domain YPDSF_0286 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain YPDSF_0289 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_0289 PF03466 LysR substrate binding domain YPDSF_0290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_0290 PF03466 LysR substrate binding domain YPDSF_0291 PF07869 Protein of unknown function (DUF1656) YPDSF_0292 PF13533 Biotin-lipoyl like YPDSF_0293 PF04632 Fusaric acid resistance protein family YPDSF_0294 PF00171 Aldehyde dehydrogenase family YPDSF_0295 PF00171 Aldehyde dehydrogenase family YPDSF_0297 PF01337 Barstar (barnase inhibitor) YPDSF_0298 PF04751 Protein of unknown function (DUF615) YPDSF_0299 PF01523 Putative modulator of DNA gyrase YPDSF_0301 PF07361 Cytochrome b562 YPDSF_0302 PF01272 Transcription elongation factor, GreA/GreB, C-term YPDSF_0302 PF14760 Rnk N-terminus YPDSF_0303 PF11941 Domain of unknown function (DUF3459) YPDSF_0303 PF00128 Alpha amylase, catalytic domain YPDSF_0304 PF02378 Phosphotransferase system, EIIC YPDSF_0304 PF00367 phosphotransferase system, EIIB YPDSF_0305 PF00356 Bacterial regulatory proteins, lacI family YPDSF_0307 PF01042 Endoribonuclease L-PSP YPDSF_0308 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YPDSF_0308 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YPDSF_0309 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPDSF_0309 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPDSF_0310 PF00381 PTS HPr component phosphorylation site YPDSF_0311 PF03668 P-loop ATPase protein family YPDSF_0312 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPDSF_0313 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPDSF_0314 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPDSF_0315 PF00309 Sigma-54 factor, Activator interacting domain (AID) YPDSF_0315 PF04963 Sigma-54 factor, core binding domain YPDSF_0315 PF04552 Sigma-54, DNA binding domain YPDSF_0316 PF00005 ABC transporter YPDSF_0316 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPDSF_0317 PF03968 OstA-like protein YPDSF_0318 PF06835 Lipopolysaccharide-assembly, LptC-related YPDSF_0320 PF00571 CBS domain YPDSF_0320 PF01380 SIS domain YPDSF_0321 PF01699 Sodium/calcium exchanger protein YPDSF_0322 PF00005 ABC transporter YPDSF_0323 PF02405 Permease MlaE YPDSF_0324 PF02470 MlaD protein YPDSF_0325 PF05494 MlaC protein YPDSF_0326 PF13466 STAS domain YPDSF_0327 PF01722 BolA-like protein YPDSF_0328 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPDSF_0329 PF13180 PDZ domain YPDSF_0330 PF01797 Transposase IS200 like YPDSF_0331 PF00595 PDZ domain YPDSF_0331 PF13180 PDZ domain YPDSF_0332 PF06295 Protein of unknown function (DUF1043) YPDSF_0333 PF03969 AFG1-like ATPase YPDSF_0334 PF00572 Ribosomal protein L13 YPDSF_0335 PF00380 Ribosomal protein S9/S16 YPDSF_0336 PF02798 Glutathione S-transferase, N-terminal domain YPDSF_0336 PF00043 Glutathione S-transferase, C-terminal domain YPDSF_0337 PF04386 Stringent starvation protein B YPDSF_0339 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPDSF_0339 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPDSF_0340 PF04898 Glutamate synthase central domain YPDSF_0340 PF00310 Glutamine amidotransferases class-II YPDSF_0340 PF01645 Conserved region in glutamate synthase YPDSF_0340 PF01493 GXGXG motif YPDSF_0341 PF16199 Radical_SAM C-terminal domain YPDSF_0341 PF04055 Radical SAM superfamily YPDSF_0342 PF00072 Response regulator receiver domain YPDSF_0342 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_0342 PF00989 PAS fold YPDSF_0342 PF01627 Hpt domain YPDSF_0342 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_0342 PF18415 Histidine kinase receptor ArcB trans-membrane domain YPDSF_0345 PF00912 Transglycosylase YPDSF_0346 PF04972 BON domain YPDSF_0347 PF13580 SIS domain YPDSF_0348 PF02021 Uncharacterised protein family UPF0102 YPDSF_0349 PF04348 LppC putative lipoprotein YPDSF_0350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPDSF_0351 PF17954 Quercetinase C-terminal cupin domain YPDSF_0351 PF02678 Pirin YPDSF_0352 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_0352 PF03466 LysR substrate binding domain YPDSF_0353 PF13409 Glutathione S-transferase, N-terminal domain YPDSF_0354 PF07681 DoxX YPDSF_0356 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YPDSF_0357 PF05957 Bacterial protein of unknown function (DUF883) YPDSF_0360 PF13721 SecD export protein N-terminal TM region YPDSF_0361 PF09335 SNARE associated Golgi protein YPDSF_0363 PF07729 FCD domain YPDSF_0363 PF00392 Bacterial regulatory proteins, gntR family YPDSF_0366 PF02614 Glucuronate isomerase YPDSF_0367 PF01232 Mannitol dehydrogenase Rossmann domain YPDSF_0367 PF08125 Mannitol dehydrogenase C-terminal domain YPDSF_0368 PF08666 SAF domain YPDSF_0368 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YPDSF_0369 PF10688 Bacterial inner membrane protein YPDSF_0370 PF01797 Transposase IS200 like YPDSF_0371 PF00375 Sodium:dicarboxylate symporter family YPDSF_0372 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPDSF_0373 PF01863 Protein of unknown function DUF45 YPDSF_0374 PF03797 Autotransporter beta-domain YPDSF_0375 PF05175 Methyltransferase small domain YPDSF_0376 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPDSF_0376 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPDSF_0377 PF03729 Short repeat of unknown function (DUF308) YPDSF_0383 PF02342 TerD domain YPDSF_0384 PF00092 von Willebrand factor type A domain YPDSF_0385 PF17287 POTRA domain YPDSF_0385 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPDSF_0385 PF08479 POTRA domain, ShlB-type YPDSF_0386 PF04829 Pre-toxin domain with VENN motif YPDSF_0386 PF05860 haemagglutination activity domain YPDSF_0386 PF13332 Hemagglutinin repeat YPDSF_0386 PF13018 Extended Signal Peptide of Type V secretion system YPDSF_0387 PF05860 haemagglutination activity domain YPDSF_0387 PF13332 Hemagglutinin repeat YPDSF_0387 PF13018 Extended Signal Peptide of Type V secretion system YPDSF_0387 PF04829 Pre-toxin domain with VENN motif YPDSF_0388 PF05860 haemagglutination activity domain YPDSF_0388 PF04829 Pre-toxin domain with VENN motif YPDSF_0388 PF13018 Extended Signal Peptide of Type V secretion system YPDSF_0388 PF13332 Hemagglutinin repeat YPDSF_0389 PF05860 haemagglutination activity domain YPDSF_0389 PF13332 Hemagglutinin repeat YPDSF_0389 PF13018 Extended Signal Peptide of Type V secretion system YPDSF_0389 PF04829 Pre-toxin domain with VENN motif YPDSF_0390 PF13018 Extended Signal Peptide of Type V secretion system YPDSF_0390 PF04829 Pre-toxin domain with VENN motif YPDSF_0390 PF05860 haemagglutination activity domain YPDSF_0390 PF13332 Hemagglutinin repeat YPDSF_0394 PF03459 TOBE domain YPDSF_0394 PF00005 ABC transporter YPDSF_0394 PF17912 MalK OB fold domain YPDSF_0395 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YPDSF_0396 PF00356 Bacterial regulatory proteins, lacI family YPDSF_0397 PF13416 Bacterial extracellular solute-binding protein YPDSF_0398 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_0399 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_0401 PF14310 Fibronectin type III-like domain YPDSF_0401 PF00933 Glycosyl hydrolase family 3 N terminal domain YPDSF_0401 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPDSF_0403 PF04632 Fusaric acid resistance protein family YPDSF_0404 PF00529 HlyD membrane-fusion protein of T1SS YPDSF_0404 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPDSF_0412 PF01042 Endoribonuclease L-PSP YPDSF_0416 PF03466 LysR substrate binding domain YPDSF_0416 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_0417 PF01695 IstB-like ATP binding protein YPDSF_0418 PF00665 Integrase core domain YPDSF_0418 PF02796 Helix-turn-helix domain of resolvase YPDSF_0427 PF03979 Sigma-70 factor, region 1.1 YPDSF_0427 PF00140 Sigma-70 factor, region 1.2 YPDSF_0427 PF04545 Sigma-70, region 4 YPDSF_0427 PF04546 Sigma-70, non-essential region YPDSF_0427 PF04539 Sigma-70 region 3 YPDSF_0427 PF04542 Sigma-70 region 2 YPDSF_0428 PF08275 DNA primase catalytic core, N-terminal domain YPDSF_0428 PF08278 DNA primase DnaG DnaB-binding YPDSF_0428 PF10410 DnaB-helicase binding domain of primase YPDSF_0428 PF01807 CHC2 zinc finger YPDSF_0429 PF01165 Ribosomal protein S21 YPDSF_0430 PF00814 Glycoprotease family YPDSF_0431 PF02660 Glycerol-3-phosphate acyltransferase YPDSF_0432 PF02152 Dihydroneopterin aldolase YPDSF_0433 PF02673 Bacitracin resistance protein BacA YPDSF_0434 PF12627 Probable RNA and SrmB- binding site of polymerase A YPDSF_0434 PF01743 Poly A polymerase head domain YPDSF_0434 PF01966 HD domain YPDSF_0435 PF08239 Bacterial SH3 domain YPDSF_0436 PF01928 CYTH domain YPDSF_0437 PF08335 GlnD PII-uridylyltransferase YPDSF_0437 PF03710 Glutamate-ammonia ligase adenylyltransferase YPDSF_0438 PF01467 Cytidylyltransferase-like YPDSF_0438 PF00294 pfkB family carbohydrate kinase YPDSF_0439 PF13520 Amino acid permease YPDSF_0440 PF04380 Membrane fusogenic activity YPDSF_0441 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YPDSF_0442 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPDSF_0443 PF03738 Glutathionylspermidine synthase preATP-grasp YPDSF_0444 PF06693 Protein of unknown function (DUF1190) YPDSF_0445 PF02321 Outer membrane efflux protein YPDSF_0446 PF00293 NUDIX domain YPDSF_0447 PF06853 Protein of unknown function (DUF1249) YPDSF_0448 PF00149 Calcineurin-like phosphoesterase YPDSF_0449 PF05728 Uncharacterised protein family (UPF0227) YPDSF_0450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_0450 PF01751 Toprim domain YPDSF_0450 PF00204 DNA gyrase B YPDSF_0450 PF00986 DNA gyrase B subunit, carboxyl terminus YPDSF_0451 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_0451 PF03466 LysR substrate binding domain YPDSF_0452 PF02525 Flavodoxin-like fold YPDSF_0454 PF03989 DNA gyrase C-terminal domain, beta-propeller YPDSF_0454 PF00521 DNA gyrase/topoisomerase IV, subunit A YPDSF_0455 PF01553 Acyltransferase YPDSF_0457 PF07732 Multicopper oxidase YPDSF_0457 PF07731 Multicopper oxidase YPDSF_0458 PF08497 Radical SAM N-terminal YPDSF_0458 PF04055 Radical SAM superfamily YPDSF_0458 PF11842 Domain of unknown function (DUF3362) YPDSF_0459 PF11842 Domain of unknown function (DUF3362) YPDSF_0459 PF04055 Radical SAM superfamily YPDSF_0459 PF08497 Radical SAM N-terminal YPDSF_0460 PF00248 Aldo/keto reductase family YPDSF_0462 PF00465 Iron-containing alcohol dehydrogenase YPDSF_0463 PF06719 AraC-type transcriptional regulator N-terminus YPDSF_0463 PF12833 Helix-turn-helix domain YPDSF_0464 PF09335 SNARE associated Golgi protein YPDSF_0465 PF01053 Cys/Met metabolism PLP-dependent enzyme YPDSF_0466 PF01618 MotA/TolQ/ExbB proton channel family YPDSF_0467 PF02472 Biopolymer transport protein ExbD/TolR YPDSF_0474 PF00437 Type II/IV secretion system protein YPDSF_0476 PF04972 BON domain YPDSF_0476 PF13629 Pilus formation protein N terminal region YPDSF_0476 PF00263 Bacterial type II and III secretion system protein YPDSF_0477 PF13629 Pilus formation protein N terminal region YPDSF_0477 PF00263 Bacterial type II and III secretion system protein YPDSF_0477 PF04972 BON domain YPDSF_0481 PF13953 PapC C-terminal domain YPDSF_0481 PF00577 Outer membrane usher protein YPDSF_0481 PF13954 PapC N-terminal domain YPDSF_0482 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPDSF_0482 PF02753 Pili assembly chaperone PapD, C-terminal domain YPDSF_0485 PF01497 Periplasmic binding protein YPDSF_0489 PF00771 FHIPEP family YPDSF_0490 PF01312 FlhB HrpN YscU SpaS Family YPDSF_0491 PF01311 Bacterial export proteins, family 1 YPDSF_0492 PF01313 Bacterial export proteins, family 3 YPDSF_0493 PF00813 FliP family YPDSF_0494 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPDSF_0496 PF02954 Bacterial regulatory protein, Fis family YPDSF_0496 PF00072 Response regulator receiver domain YPDSF_0496 PF00158 Sigma-54 interaction domain YPDSF_0497 PF02049 Flagellar hook-basal body complex protein FliE YPDSF_0498 PF01514 Secretory protein of YscJ/FliF family YPDSF_0498 PF08345 Flagellar M-ring protein C-terminal YPDSF_0501 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPDSF_0501 PF18269 T3SS EscN ATPase C-terminal domain YPDSF_0505 PF13144 Chaperone for flagella basal body P-ring formation YPDSF_0506 PF00460 Flagella basal body rod protein YPDSF_0507 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPDSF_0507 PF00460 Flagella basal body rod protein YPDSF_0508 PF03963 Flagellar hook capping protein - N-terminal region YPDSF_0508 PF13861 FlgD Tudor-like domain YPDSF_0508 PF13860 FlgD Ig-like domain YPDSF_0509 PF00460 Flagella basal body rod protein YPDSF_0509 PF07559 Flagellar basal body protein FlaE YPDSF_0509 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPDSF_0510 PF00460 Flagella basal body rod protein YPDSF_0510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPDSF_0511 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPDSF_0511 PF00460 Flagella basal body rod protein YPDSF_0512 PF02107 Flagellar L-ring protein YPDSF_0513 PF02119 Flagellar P-ring protein YPDSF_0515 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPDSF_0515 PF00460 Flagella basal body rod protein YPDSF_0519 PF18500 CadC C-terminal domain 1 YPDSF_0519 PF00486 Transcriptional regulatory protein, C terminal YPDSF_0520 PF00669 Bacterial flagellin N-terminal helical region YPDSF_0520 PF00700 Bacterial flagellin C-terminal helical region YPDSF_0521 PF00700 Bacterial flagellin C-terminal helical region YPDSF_0521 PF00669 Bacterial flagellin N-terminal helical region YPDSF_0522 PF13276 HTH-like domain YPDSF_0522 PF13333 Integrase core domain YPDSF_0522 PF00665 Integrase core domain YPDSF_0524 PF07715 TonB-dependent Receptor Plug Domain YPDSF_0524 PF00593 TonB dependent receptor YPDSF_0525 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPDSF_0526 PF06276 Ferric iron reductase FhuF-like transporter YPDSF_0526 PF04183 IucA / IucC family YPDSF_0528 PF06276 Ferric iron reductase FhuF-like transporter YPDSF_0528 PF04183 IucA / IucC family YPDSF_0529 PF06276 Ferric iron reductase FhuF-like transporter YPDSF_0529 PF04183 IucA / IucC family YPDSF_0533 PF00196 Bacterial regulatory proteins, luxR family YPDSF_0533 PF03472 Autoinducer binding domain YPDSF_0534 PF00765 Autoinducer synthase YPDSF_0535 PF02517 CPBP intramembrane metalloprotease YPDSF_0537 PF12759 InsA C-terminal domain YPDSF_0537 PF03811 InsA N-terminal domain YPDSF_0542 PF05736 OprF membrane domain YPDSF_0542 PF00691 OmpA family YPDSF_0545 PF00004 ATPase family associated with various cellular activities (AAA) YPDSF_0545 PF07724 AAA domain (Cdc48 subfamily) YPDSF_0545 PF17871 AAA lid domain YPDSF_0545 PF10431 C-terminal, D2-small domain, of ClpB protein YPDSF_0549 PF12759 InsA C-terminal domain YPDSF_0549 PF03811 InsA N-terminal domain YPDSF_0550 PF03400 IS1 transposase YPDSF_0554 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPDSF_0554 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPDSF_0554 PF01276 Orn/Lys/Arg decarboxylase, major domain YPDSF_0555 PF13407 Periplasmic binding protein domain YPDSF_0556 PF00005 ABC transporter YPDSF_0557 PF02653 Branched-chain amino acid transport system / permease component YPDSF_0558 PF07715 TonB-dependent Receptor Plug Domain YPDSF_0560 PF01464 Transglycosylase SLT domain YPDSF_0560 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YPDSF_0561 PF04362 Bacterial Fe(2+) trafficking YPDSF_0562 PF00633 Helix-hairpin-helix motif YPDSF_0562 PF00730 HhH-GPD superfamily base excision DNA repair protein YPDSF_0562 PF14815 NUDIX domain YPDSF_0562 PF10576 Iron-sulfur binding domain of endonuclease III YPDSF_0563 PF02390 Putative methyltransferase YPDSF_0564 PF04320 Protein with unknown function (DUF469) YPDSF_0565 PF04960 Glutaminase YPDSF_0566 PF11101 Protein of unknown function (DUF2884) YPDSF_0567 PF11101 Protein of unknown function (DUF2884) YPDSF_0568 PF07634 RtxA repeat YPDSF_0568 PF11713 Peptidase C80 family YPDSF_0568 PF16671 Actin cross-linking domain YPDSF_0568 PF11647 Membrane Localization Domain YPDSF_0568 PF12146 Serine aminopeptidase, S33 YPDSF_0569 PF04055 Radical SAM superfamily YPDSF_0569 PF06969 HemN C-terminal domain YPDSF_0570 PF01725 Ham1 family YPDSF_0571 PF02594 Uncharacterised ACR, YggU family COG1872 YPDSF_0572 PF02325 YGGT family YPDSF_0573 PF03807 NADP oxidoreductase coenzyme F420-dependent YPDSF_0573 PF14748 Pyrroline-5-carboxylate reductase dimerisation YPDSF_0574 PF01168 Alanine racemase, N-terminal domain YPDSF_0575 PF00437 Type II/IV secretion system protein YPDSF_0576 PF04371 Porphyromonas-type peptidyl-arginine deiminase YPDSF_0577 PF00795 Carbon-nitrogen hydrolase YPDSF_0578 PF03652 Holliday junction resolvase YPDSF_0579 PF02622 Uncharacterized ACR, COG1678 YPDSF_0580 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YPDSF_0580 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YPDSF_0581 PF04452 RNA methyltransferase YPDSF_0583 PF04231 Endonuclease I YPDSF_0584 PF10263 SprT-like family YPDSF_0584 PF17283 SprT-like zinc ribbon domain YPDSF_0585 PF00438 S-adenosylmethionine synthetase, N-terminal domain YPDSF_0585 PF02772 S-adenosylmethionine synthetase, central domain YPDSF_0585 PF02773 S-adenosylmethionine synthetase, C-terminal domain YPDSF_0586 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPDSF_0586 PF17810 Arginine decarboxylase helical bundle domain YPDSF_0586 PF17944 Arginine decarboxylase C-terminal helical extension YPDSF_0587 PF00355 Rieske [2Fe-2S] domain YPDSF_0588 PF01435 Peptidase family M48 YPDSF_0589 PF00456 Transketolase, thiamine diphosphate binding domain YPDSF_0589 PF02779 Transketolase, pyrimidine binding domain YPDSF_0589 PF02780 Transketolase, C-terminal domain YPDSF_0591 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPDSF_0591 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPDSF_0592 PF00162 Phosphoglycerate kinase YPDSF_0593 PF01116 Fructose-bisphosphate aldolase class-II YPDSF_0594 PF05552 Conserved TM helix YPDSF_0594 PF00924 Mechanosensitive ion channel YPDSF_0595 PF01810 LysE type translocator YPDSF_0596 PF04402 Protein of unknown function (DUF541) YPDSF_0597 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_0597 PF03466 LysR substrate binding domain YPDSF_0598 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPDSF_0599 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPDSF_0599 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPDSF_0599 PF01842 ACT domain YPDSF_0600 PF01797 Transposase IS200 like YPDSF_0601 PF01812 5-formyltetrahydrofolate cyclo-ligase family YPDSF_0602 PF05164 Cell division protein ZapA YPDSF_0603 PF03695 Uncharacterised protein family (UPF0149) YPDSF_0604 PF05195 Aminopeptidase P, N-terminal domain YPDSF_0604 PF00557 Metallopeptidase family M24 YPDSF_0605 PF01494 FAD binding domain YPDSF_0606 PF01494 FAD binding domain YPDSF_0607 PF08669 Glycine cleavage T-protein C-terminal barrel domain YPDSF_0607 PF01571 Aminomethyltransferase folate-binding domain YPDSF_0608 PF01597 Glycine cleavage H-protein YPDSF_0609 PF02347 Glycine cleavage system P-protein YPDSF_0615 PF03006 Haemolysin-III related YPDSF_0617 PF01571 Aminomethyltransferase folate-binding domain YPDSF_0618 PF03937 Flavinator of succinate dehydrogenase YPDSF_0619 PF07254 Membrane-bound toxin component of toxin-antitoxin system YPDSF_0620 PF00072 Response regulator receiver domain YPDSF_0620 PF00486 Transcriptional regulatory protein, C terminal YPDSF_0621 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_0621 PF00672 HAMP domain YPDSF_0621 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_0622 PF06123 Inner membrane protein CreD YPDSF_0623 PF00258 Flavodoxin YPDSF_0624 PF02899 Phage integrase, N-terminal SAM-like domain YPDSF_0624 PF00589 Phage integrase family YPDSF_0625 PF13098 Thioredoxin-like domain YPDSF_0625 PF10411 Disulfide bond isomerase protein N-terminus YPDSF_0626 PF01368 DHH family YPDSF_0626 PF02272 DHHA1 domain YPDSF_0626 PF17768 RecJ OB domain YPDSF_0627 PF03462 PCRF domain YPDSF_0627 PF00472 RF-1 domain YPDSF_0628 PF00152 tRNA synthetases class II (D, K and N) YPDSF_0628 PF01336 OB-fold nucleic acid binding domain YPDSF_0629 PF13356 Arm DNA-binding domain YPDSF_0629 PF00589 Phage integrase family YPDSF_0629 PF14659 Phage integrase, N-terminal SAM-like domain YPDSF_0633 PF15723 Motility quorum-sensing regulator, toxin of MqsA YPDSF_0634 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA YPDSF_0649 PF03551 Transcriptional regulator PadR-like family YPDSF_0650 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPDSF_0652 PF13407 Periplasmic binding protein domain YPDSF_0653 PF02653 Branched-chain amino acid transport system / permease component YPDSF_0654 PF00005 ABC transporter YPDSF_0655 PF17912 MalK OB fold domain YPDSF_0655 PF00005 ABC transporter YPDSF_0656 PF13416 Bacterial extracellular solute-binding protein YPDSF_0658 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_0659 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_0660 PF07745 Glycosyl hydrolase family 53 YPDSF_0664 PF02264 LamB porin YPDSF_0665 PF00356 Bacterial regulatory proteins, lacI family YPDSF_0666 PF16338 Domain of unknown function (DUF4968) YPDSF_0666 PF01055 Glycosyl hydrolases family 31 YPDSF_0666 PF13802 Galactose mutarotase-like YPDSF_0666 PF17137 Domain of unknown function (DUF5110) YPDSF_0667 PF07690 Major Facilitator Superfamily YPDSF_0668 PF00356 Bacterial regulatory proteins, lacI family YPDSF_0670 PF01116 Fructose-bisphosphate aldolase class-II YPDSF_0672 PF00884 Sulfatase YPDSF_0673 PF04055 Radical SAM superfamily YPDSF_0673 PF13186 Iron-sulfur cluster-binding domain YPDSF_0676 PF01979 Amidohydrolase family YPDSF_0677 PF03610 PTS system fructose IIA component YPDSF_0678 PF03613 PTS system mannose/fructose/sorbose family IID component YPDSF_0679 PF03609 PTS system sorbose-specific iic component YPDSF_0680 PF03830 PTS system sorbose subfamily IIB component YPDSF_0681 PF01380 SIS domain YPDSF_0682 PF08013 Tagatose 6 phosphate kinase YPDSF_0683 PF00455 DeoR C terminal sensor domain YPDSF_0683 PF08220 DeoR-like helix-turn-helix domain YPDSF_0684 PF00884 Sulfatase YPDSF_0685 PF01797 Transposase IS200 like YPDSF_0686 PF00665 Integrase core domain YPDSF_0686 PF02796 Helix-turn-helix domain of resolvase YPDSF_0687 PF01695 IstB-like ATP binding protein YPDSF_0688 PF09092 Lyase, N terminal YPDSF_0688 PF02278 Polysaccharide lyase family 8, super-sandwich domain YPDSF_0688 PF09093 Lyase, catalytic YPDSF_0688 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YPDSF_0692 PF00484 Carbonic anhydrase YPDSF_0694 PF03958 Bacterial type II/III secretion system short domain YPDSF_0694 PF00263 Bacterial type II and III secretion system protein YPDSF_0696 PF00482 Type II secretion system (T2SS), protein F YPDSF_0697 PF08334 Type II secretion system (T2SS), protein G YPDSF_0697 PF07963 Prokaryotic N-terminal methylation motif YPDSF_0703 PF06750 Bacterial Peptidase A24 N-terminal domain YPDSF_0703 PF01478 Type IV leader peptidase family YPDSF_0705 PF00872 Transposase, Mutator family YPDSF_0706 PF13419 Haloacid dehalogenase-like hydrolase YPDSF_0707 PF14002 YniB-like protein YPDSF_0710 PF00950 ABC 3 transport family YPDSF_0711 PF00950 ABC 3 transport family YPDSF_0712 PF00005 ABC transporter YPDSF_0713 PF01297 Zinc-uptake complex component A periplasmic YPDSF_0714 PF01464 Transglycosylase SLT domain YPDSF_0715 PF01914 MarC family integral membrane protein YPDSF_0716 PF13619 KTSC domain YPDSF_0717 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPDSF_0717 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPDSF_0717 PF02824 TGS domain YPDSF_0717 PF03129 Anticodon binding domain YPDSF_0718 PF05198 Translation initiation factor IF-3, N-terminal domain YPDSF_0718 PF00707 Translation initiation factor IF-3, C-terminal domain YPDSF_0719 PF01632 Ribosomal protein L35 YPDSF_0720 PF00453 Ribosomal protein L20 YPDSF_0721 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YPDSF_0721 PF01409 tRNA synthetases class II core domain (F) YPDSF_0722 PF03147 Ferredoxin-fold anticodon binding domain YPDSF_0722 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YPDSF_0722 PF03483 B3/4 domain YPDSF_0722 PF01588 Putative tRNA binding domain YPDSF_0722 PF03484 tRNA synthetase B5 domain YPDSF_0723 PF00216 Bacterial DNA-binding protein YPDSF_0725 PF01032 FecCD transport family YPDSF_0726 PF00255 Glutathione peroxidase YPDSF_0727 PF00005 ABC transporter YPDSF_0728 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPDSF_0729 PF00535 Glycosyl transferase family 2 YPDSF_0730 PF00551 Formyl transferase YPDSF_0730 PF01370 NAD dependent epimerase/dehydratase family YPDSF_0730 PF02911 Formyl transferase, C-terminal domain YPDSF_0731 PF01522 Polysaccharide deacetylase YPDSF_0732 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YPDSF_0733 PF00892 EamA-like transporter family YPDSF_0735 PF00877 NlpC/P60 family YPDSF_0736 PF03099 Biotin/lipoate A/B protein ligase family YPDSF_0736 PF10437 Bacterial lipoate protein ligase C-terminus YPDSF_0737 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YPDSF_0738 PF00793 DAHP synthetase I family YPDSF_0739 PF03618 Kinase/pyrophosphorylase YPDSF_0740 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YPDSF_0740 PF02896 PEP-utilising enzyme, TIM barrel domain YPDSF_0740 PF00391 PEP-utilising enzyme, mobile domain YPDSF_0741 PF01594 AI-2E family transporter YPDSF_0742 PF02913 FAD linked oxidases, C-terminal domain YPDSF_0742 PF01565 FAD binding domain YPDSF_0742 PF13183 4Fe-4S dicluster domain YPDSF_0743 PF03061 Thioesterase superfamily YPDSF_0744 PF01521 Iron-sulphur cluster biosynthesis YPDSF_0745 PF01458 Uncharacterized protein family (UPF0051) YPDSF_0746 PF00005 ABC transporter YPDSF_0747 PF01458 Uncharacterized protein family (UPF0051) YPDSF_0748 PF00266 Aminotransferase class-V YPDSF_0749 PF02657 Fe-S metabolism associated domain YPDSF_0750 PF03734 L,D-transpeptidase catalytic domain YPDSF_0750 PF17969 L,D-transpeptidase C-terminal domain YPDSF_0750 PF01476 LysM domain YPDSF_0751 PF01695 IstB-like ATP binding protein YPDSF_0752 PF02796 Helix-turn-helix domain of resolvase YPDSF_0752 PF00665 Integrase core domain YPDSF_0754 PF02887 Pyruvate kinase, alpha/beta domain YPDSF_0754 PF00224 Pyruvate kinase, barrel domain YPDSF_0755 PF01554 MatE YPDSF_0756 PF00677 Lumazine binding domain YPDSF_0758 PF07690 Major Facilitator Superfamily YPDSF_0759 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_0759 PF03466 LysR substrate binding domain YPDSF_0760 PF00356 Bacterial regulatory proteins, lacI family YPDSF_0761 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPDSF_0761 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPDSF_0762 PF00877 NlpC/P60 family YPDSF_0763 PF00462 Glutaredoxin YPDSF_0764 PF00929 Exonuclease YPDSF_0765 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPDSF_0766 PF14431 YwqJ-like deaminase YPDSF_0766 PF18807 Tripartite Tc toxins repeat YPDSF_0767 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPDSF_0768 PF00440 Bacterial regulatory proteins, tetR family YPDSF_0768 PF16925 Tetracyclin repressor-like, C-terminal domain YPDSF_0769 PF08019 Phosphoethanolamine transferase EptA/EptB YPDSF_0769 PF00884 Sulfatase YPDSF_0770 PF06945 Protein of unknown function (DUF1289) YPDSF_0771 PF00248 Aldo/keto reductase family YPDSF_0772 PF01047 MarR family YPDSF_0773 PF05433 Glycine zipper 2TM domain YPDSF_0774 PF03702 Anhydro-N-acetylmuramic acid kinase YPDSF_0775 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YPDSF_0776 PF01243 Pyridoxamine 5'-phosphate oxidase YPDSF_0776 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YPDSF_0777 PF00579 tRNA synthetases class I (W and Y) YPDSF_0777 PF01479 S4 domain YPDSF_0778 PF08543 Phosphomethylpyrimidine kinase YPDSF_0779 PF00043 Glutathione S-transferase, C-terminal domain YPDSF_0779 PF02798 Glutathione S-transferase, N-terminal domain YPDSF_0780 PF11656 YjbD family (DUF3811) YPDSF_0781 PF04893 Yip1 domain YPDSF_0782 PF00854 POT family YPDSF_0784 PF00005 ABC transporter YPDSF_0785 PF00005 ABC transporter YPDSF_0785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPDSF_0786 PF12911 N-terminal TM domain of oligopeptide transport permease C YPDSF_0786 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_0787 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_0788 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPDSF_0790 PF00158 Sigma-54 interaction domain YPDSF_0790 PF02954 Bacterial regulatory protein, Fis family YPDSF_0791 PF04012 PspA/IM30 family YPDSF_0792 PF06667 Phage shock protein B YPDSF_0793 PF04024 PspC domain YPDSF_0795 PF04317 YcjX-like family, DUF463 YPDSF_0796 PF05128 Domain of unknown function (DUF697) YPDSF_0799 PF18024 Helix-turn-helix domain YPDSF_0799 PF00158 Sigma-54 interaction domain YPDSF_0801 PF01695 IstB-like ATP binding protein YPDSF_0802 PF02796 Helix-turn-helix domain of resolvase YPDSF_0802 PF00665 Integrase core domain YPDSF_0803 PF08534 Redoxin YPDSF_0804 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPDSF_0804 PF13378 Enolase C-terminal domain-like YPDSF_0805 PF00246 Zinc carboxypeptidase YPDSF_0806 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPDSF_0807 PF01544 CorA-like Mg2+ transporter protein YPDSF_0810 PF13472 GDSL-like Lipase/Acylhydrolase family YPDSF_0810 PF07859 alpha/beta hydrolase fold YPDSF_0811 PF01171 PP-loop family YPDSF_0812 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YPDSF_0812 PF10371 Domain of unknown function YPDSF_0812 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YPDSF_0812 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YPDSF_0812 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPDSF_0813 PF00893 Small Multidrug Resistance protein YPDSF_0814 PF02308 MgtC family YPDSF_0815 PF03891 Domain of unknown function (DUF333) YPDSF_0816 PF03724 META domain YPDSF_0817 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPDSF_0817 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPDSF_0818 PF11739 Dicarboxylate transport YPDSF_0819 PF13617 YnbE-like lipoprotein YPDSF_0820 PF07027 Protein of unknown function (DUF1318) YPDSF_0821 PF08125 Mannitol dehydrogenase C-terminal domain YPDSF_0821 PF01232 Mannitol dehydrogenase Rossmann domain YPDSF_0822 PF04198 Putative sugar-binding domain YPDSF_0822 PF00325 Bacterial regulatory proteins, crp family YPDSF_0823 PF02525 Flavodoxin-like fold YPDSF_0824 PF00270 DEAD/DEAH box helicase YPDSF_0824 PF11898 Domain of unknown function (DUF3418) YPDSF_0824 PF04408 Helicase associated domain (HA2) YPDSF_0824 PF00271 Helicase conserved C-terminal domain YPDSF_0824 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YPDSF_0826 PF00089 Trypsin YPDSF_0828 PF01292 Prokaryotic cytochrome b561 YPDSF_0829 PF04264 YceI-like domain YPDSF_0832 PF18807 Tripartite Tc toxins repeat YPDSF_0832 PF14431 YwqJ-like deaminase YPDSF_0834 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YPDSF_0835 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_0835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_0835 PF00672 HAMP domain YPDSF_0836 PF00072 Response regulator receiver domain YPDSF_0836 PF00486 Transcriptional regulatory protein, C terminal YPDSF_0838 PF13520 Amino acid permease YPDSF_0839 PF07338 Protein of unknown function (DUF1471) YPDSF_0840 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YPDSF_0840 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YPDSF_0840 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YPDSF_0841 PF02233 NAD(P) transhydrogenase beta subunit YPDSF_0842 PF00582 Universal stress protein family YPDSF_0843 PF13545 Crp-like helix-turn-helix domain YPDSF_0843 PF00027 Cyclic nucleotide-binding domain YPDSF_0844 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPDSF_0844 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPDSF_0845 PF00245 Alkaline phosphatase YPDSF_0847 PF13419 Haloacid dehalogenase-like hydrolase YPDSF_0848 PF01842 ACT domain YPDSF_0849 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPDSF_0849 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPDSF_0849 PF00205 Thiamine pyrophosphate enzyme, central domain YPDSF_0855 PF01048 Phosphorylase superfamily YPDSF_0855 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YPDSF_0856 PF00005 ABC transporter YPDSF_0857 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_0858 PF09084 NMT1/THI5 like YPDSF_0861 PF00356 Bacterial regulatory proteins, lacI family YPDSF_0862 PF06649 Protein of unknown function (DUF1161) YPDSF_0863 PF00654 Voltage gated chloride channel YPDSF_0865 PF00480 ROK family YPDSF_0866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_0866 PF03466 LysR substrate binding domain YPDSF_0867 PF07690 Major Facilitator Superfamily YPDSF_0868 PF05472 DNA replication terminus site-binding protein (Ter protein) YPDSF_0869 PF10415 Fumarase C C-terminus YPDSF_0869 PF00206 Lyase YPDSF_0870 PF01238 Phosphomannose isomerase type I YPDSF_0871 PF06097 Bacterial protein of unknown function (DUF945) YPDSF_0873 PF13593 SBF-like CPA transporter family (DUF4137) YPDSF_0874 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPDSF_0874 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPDSF_0875 PF12833 Helix-turn-helix domain YPDSF_0875 PF02311 AraC-like ligand binding domain YPDSF_0878 PF00005 ABC transporter YPDSF_0879 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPDSF_0880 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPDSF_0881 PF11762 L-arabinose isomerase C-terminal domain YPDSF_0881 PF02610 L-arabinose isomerase YPDSF_0882 PF00664 ABC transporter transmembrane region YPDSF_0882 PF03412 Peptidase C39 family YPDSF_0882 PF00005 ABC transporter YPDSF_0884 PF13533 Biotin-lipoyl like YPDSF_0885 PF03412 Peptidase C39 family YPDSF_0885 PF00005 ABC transporter YPDSF_0885 PF00664 ABC transporter transmembrane region YPDSF_0886 PF00664 ABC transporter transmembrane region YPDSF_0886 PF00005 ABC transporter YPDSF_0886 PF03412 Peptidase C39 family YPDSF_0888 PF10754 Protein of unknown function (DUF2569) YPDSF_0889 PF02508 Rnf-Nqr subunit, membrane protein YPDSF_0890 PF04060 Putative Fe-S cluster YPDSF_0891 PF10531 SLBB domain YPDSF_0891 PF13375 RnfC Barrel sandwich hybrid domain YPDSF_0891 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPDSF_0891 PF13237 4Fe-4S dicluster domain YPDSF_0892 PF12833 Helix-turn-helix domain YPDSF_0892 PF06445 GyrI-like small molecule binding domain YPDSF_0893 PF03116 NQR2, RnfD, RnfE family YPDSF_0894 PF04205 FMN-binding domain YPDSF_0895 PF02508 Rnf-Nqr subunit, membrane protein YPDSF_0896 PF10576 Iron-sulfur binding domain of endonuclease III YPDSF_0896 PF00633 Helix-hairpin-helix motif YPDSF_0896 PF00730 HhH-GPD superfamily base excision DNA repair protein YPDSF_0897 PF01370 NAD dependent epimerase/dehydratase family YPDSF_0898 PF07690 Major Facilitator Superfamily YPDSF_0899 PF00773 RNB domain YPDSF_0899 PF08206 Ribonuclease B OB domain YPDSF_0899 PF00575 S1 RNA binding domain YPDSF_0899 PF17876 Cold shock domain YPDSF_0900 PF13722 5TM C-terminal transporter carbon starvation CstA YPDSF_0900 PF02554 Carbon starvation protein CstA YPDSF_0901 PF04328 Selenoprotein, putative YPDSF_0902 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPDSF_0904 PF00596 Class II Aldolase and Adducin N-terminal domain YPDSF_0906 PF01253 Translation initiation factor SUI1 YPDSF_0907 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YPDSF_0909 PF18073 Rubredoxin metal binding domain YPDSF_0910 PF06305 Lipopolysaccharide assembly protein A domain YPDSF_0911 PF01569 PAP2 superfamily YPDSF_0912 PF00925 GTP cyclohydrolase II YPDSF_0913 PF00694 Aconitase C-terminal domain YPDSF_0913 PF00330 Aconitase family (aconitate hydratase) YPDSF_0915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_0915 PF03466 LysR substrate binding domain YPDSF_0916 PF01797 Transposase IS200 like YPDSF_0917 PF01396 Topoisomerase DNA binding C4 zinc finger YPDSF_0917 PF01751 Toprim domain YPDSF_0917 PF08272 Topoisomerase I zinc-ribbon-like YPDSF_0917 PF01131 DNA topoisomerase YPDSF_0918 PF10692 Protein of unknown function (DUF2498) YPDSF_0919 PF08496 Peptidase family S49 N-terminal YPDSF_0919 PF01343 Peptidase family S49 YPDSF_0920 PF00106 short chain dehydrogenase YPDSF_0921 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YPDSF_0922 PF00849 RNA pseudouridylate synthase YPDSF_0922 PF01479 S4 domain YPDSF_0923 PF01300 Telomere recombination YPDSF_0924 PF02811 PHP domain YPDSF_0925 PF04715 Anthranilate synthase component I, N terminal region YPDSF_0925 PF00425 chorismate binding enzyme YPDSF_0926 PF00117 Glutamine amidotransferase class-I YPDSF_0927 PF02885 Glycosyl transferase family, helical bundle domain YPDSF_0927 PF00591 Glycosyl transferase family, a/b domain YPDSF_0928 PF00218 Indole-3-glycerol phosphate synthase YPDSF_0928 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YPDSF_0929 PF00291 Pyridoxal-phosphate dependent enzyme YPDSF_0930 PF00290 Tryptophan synthase alpha chain YPDSF_0933 PF03922 OmpW family YPDSF_0938 PF04279 Intracellular septation protein A YPDSF_0939 PF03061 Thioesterase superfamily YPDSF_0940 PF00872 Transposase, Mutator family YPDSF_0941 PF03544 Gram-negative bacterial TonB protein C-terminal YPDSF_0942 PF03795 YCII-related domain YPDSF_0946 PF13505 Outer membrane protein beta-barrel domain YPDSF_0947 PF13091 PLD-like domain YPDSF_0947 PF13396 Phospholipase_D-nuclease N-terminal YPDSF_0948 PF04269 Protein of unknown function, DUF440 YPDSF_0950 PF00005 ABC transporter YPDSF_0950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPDSF_0951 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPDSF_0951 PF00005 ABC transporter YPDSF_0952 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_0952 PF12911 N-terminal TM domain of oligopeptide transport permease C YPDSF_0953 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_0954 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPDSF_0955 PF01914 MarC family integral membrane protein YPDSF_0956 PF00465 Iron-containing alcohol dehydrogenase YPDSF_0956 PF00171 Aldehyde dehydrogenase family YPDSF_0957 PF00265 Thymidine kinase YPDSF_0958 PF00816 H-NS histone family YPDSF_0959 PF00872 Transposase, Mutator family YPDSF_0960 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPDSF_0960 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPDSF_0960 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPDSF_0961 PF00072 Response regulator receiver domain YPDSF_0962 PF02810 SEC-C motif YPDSF_0963 PF00551 Formyl transferase YPDSF_0963 PF01842 ACT domain YPDSF_0964 PF00872 Transposase, Mutator family YPDSF_0965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_0965 PF03466 LysR substrate binding domain YPDSF_0966 PF03372 Endonuclease/Exonuclease/phosphatase family YPDSF_0967 PF00293 NUDIX domain YPDSF_0968 PF07383 Protein of unknown function (DUF1496) YPDSF_0969 PF01131 DNA topoisomerase YPDSF_0969 PF01751 Toprim domain YPDSF_0970 PF00586 AIR synthase related protein, N-terminal domain YPDSF_0970 PF02769 AIR synthase related protein, C-terminal domain YPDSF_0971 PF00881 Nitroreductase family YPDSF_0972 PF01343 Peptidase family S49 YPDSF_0973 PF00710 Asparaginase, N-terminal YPDSF_0973 PF17763 Glutaminase/Asparaginase C-terminal domain YPDSF_0974 PF00857 Isochorismatase family YPDSF_0975 PF07023 Protein of unknown function (DUF1315) YPDSF_0976 PF01641 SelR domain YPDSF_0977 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPDSF_0977 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPDSF_0978 PF01263 Aldose 1-epimerase YPDSF_0979 PF06629 MltA-interacting protein MipA YPDSF_0980 PF06798 PrkA serine protein kinase C-terminal domain YPDSF_0980 PF08298 PrkA AAA domain YPDSF_0981 PF04285 Protein of unknown function (DUF444) YPDSF_0983 PF03466 LysR substrate binding domain YPDSF_0983 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_0984 PF05726 Pirin C-terminal cupin domain YPDSF_0984 PF02678 Pirin YPDSF_0985 PF07690 Major Facilitator Superfamily YPDSF_0986 PF01266 FAD dependent oxidoreductase YPDSF_0987 PF04293 SpoVR like protein YPDSF_0988 PF00392 Bacterial regulatory proteins, gntR family YPDSF_0988 PF07840 FadR C-terminal domain YPDSF_0989 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YPDSF_0990 PF02600 Disulfide bond formation protein DsbB YPDSF_0993 PF00266 Aminotransferase class-V YPDSF_0997 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPDSF_1008 PF01797 Transposase IS200 like YPDSF_1032 PF06530 Phage antitermination protein Q YPDSF_1034 PF05772 NinB protein YPDSF_1036 PF01695 IstB-like ATP binding protein YPDSF_1037 PF02796 Helix-turn-helix domain of resolvase YPDSF_1037 PF00665 Integrase core domain YPDSF_1038 PF12167 Arm DNA-binding domain YPDSF_1038 PF00589 Phage integrase family YPDSF_1039 PF03692 Putative zinc- or iron-chelating domain YPDSF_1040 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPDSF_1041 PF13406 Transglycosylase SLT domain YPDSF_1042 PF05166 YcgL domain YPDSF_1043 PF03775 Septum formation inhibitor MinC, C-terminal domain YPDSF_1043 PF05209 Septum formation inhibitor MinC, N-terminal domain YPDSF_1044 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YPDSF_1045 PF03776 Septum formation topological specificity factor MinE YPDSF_1046 PF01612 3'-5' exonuclease YPDSF_1046 PF00570 HRDC domain YPDSF_1047 PF13193 AMP-binding enzyme C-terminal domain YPDSF_1047 PF00501 AMP-binding enzyme YPDSF_1050 PF00814 Glycoprotease family YPDSF_1051 PF13307 Helicase C-terminal domain YPDSF_1051 PF04851 Type III restriction enzyme, res subunit YPDSF_1052 PF01042 Endoribonuclease L-PSP YPDSF_1053 PF00893 Small Multidrug Resistance protein YPDSF_1054 PF00893 Small Multidrug Resistance protein YPDSF_1055 PF01081 KDPG and KHG aldolase YPDSF_1056 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YPDSF_1056 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YPDSF_1057 PF01418 Helix-turn-helix domain, rpiR family YPDSF_1057 PF01380 SIS domain YPDSF_1058 PF02887 Pyruvate kinase, alpha/beta domain YPDSF_1058 PF00224 Pyruvate kinase, barrel domain YPDSF_1059 PF03279 Bacterial lipid A biosynthesis acyltransferase YPDSF_1060 PF01551 Peptidase family M23 YPDSF_1060 PF01476 LysM domain YPDSF_1060 PF08525 Opacity-associated protein A N-terminal motif YPDSF_1061 PF01297 Zinc-uptake complex component A periplasmic YPDSF_1062 PF00005 ABC transporter YPDSF_1063 PF00950 ABC 3 transport family YPDSF_1064 PF05491 RuvB C-terminal winged helix domain YPDSF_1064 PF05496 Holliday junction DNA helicase RuvB P-loop domain YPDSF_1064 PF17864 RuvB AAA lid domain YPDSF_1065 PF07499 RuvA, C-terminal domain YPDSF_1065 PF01330 RuvA N terminal domain YPDSF_1066 PF02075 Crossover junction endodeoxyribonuclease RuvC YPDSF_1067 PF01709 Transcriptional regulator YPDSF_1068 PF00293 NUDIX domain YPDSF_1069 PF02938 GAD domain YPDSF_1069 PF00152 tRNA synthetases class II (D, K and N) YPDSF_1069 PF01336 OB-fold nucleic acid binding domain YPDSF_1070 PF01904 Protein of unknown function DUF72 YPDSF_1071 PF01124 MAPEG family YPDSF_1072 PF13649 Methyltransferase domain YPDSF_1073 PF08003 Protein of unknown function (DUF1698) YPDSF_1074 PF03932 CutC family YPDSF_1075 PF06185 YecM protein YPDSF_1077 PF03485 Arginyl tRNA synthetase N terminal domain YPDSF_1077 PF05746 DALR anticodon binding domain YPDSF_1077 PF00750 tRNA synthetases class I (R) YPDSF_1078 PF05860 haemagglutination activity domain YPDSF_1078 PF13332 Hemagglutinin repeat YPDSF_1079 PF08479 POTRA domain, ShlB-type YPDSF_1079 PF17287 POTRA domain YPDSF_1079 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPDSF_1080 PF03023 Lipid II flippase MurJ YPDSF_1081 PF04337 Protein of unknown function, DUF480 YPDSF_1082 PF13302 Acetyltransferase (GNAT) domain YPDSF_1083 PF07690 Major Facilitator Superfamily YPDSF_1084 PF07273 Protein of unknown function (DUF1439) YPDSF_1085 PF02613 Nitrate reductase delta subunit YPDSF_1086 PF02811 PHP domain YPDSF_1087 PF00480 ROK family YPDSF_1087 PF01325 Iron dependent repressor, N-terminal DNA binding domain YPDSF_1088 PF03009 Glycerophosphoryl diester phosphodiesterase family YPDSF_1089 PF00005 ABC transporter YPDSF_1089 PF08402 TOBE domain YPDSF_1091 PF08402 TOBE domain YPDSF_1091 PF00005 ABC transporter YPDSF_1092 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_1093 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_1095 PF03009 Glycerophosphoryl diester phosphodiesterase family YPDSF_1096 PF01740 STAS domain YPDSF_1096 PF00916 Sulfate permease family YPDSF_1097 PF00793 DAHP synthetase I family YPDSF_1098 PF13369 Transglutaminase-like superfamily YPDSF_1099 PF04247 Invasion gene expression up-regulator, SirB YPDSF_1100 PF17827 PrmC N-terminal domain YPDSF_1100 PF13847 Methyltransferase domain YPDSF_1101 PF03462 PCRF domain YPDSF_1101 PF00472 RF-1 domain YPDSF_1102 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YPDSF_1102 PF01488 Shikimate / quinate 5-dehydrogenase YPDSF_1102 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YPDSF_1103 PF03550 Outer membrane lipoprotein LolB YPDSF_1104 PF00288 GHMP kinases N terminal domain YPDSF_1104 PF08544 GHMP kinases C terminal YPDSF_1106 PF14572 Phosphoribosyl synthetase-associated domain YPDSF_1106 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YPDSF_1107 PF10762 Protein of unknown function (DUF2583) YPDSF_1108 PF01195 Peptidyl-tRNA hydrolase YPDSF_1109 PF01926 50S ribosome-binding GTPase YPDSF_1109 PF06071 Protein of unknown function (DUF933) YPDSF_1118 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YPDSF_1119 PF00072 Response regulator receiver domain YPDSF_1119 PF00486 Transcriptional regulatory protein, C terminal YPDSF_1120 PF02796 Helix-turn-helix domain of resolvase YPDSF_1120 PF00665 Integrase core domain YPDSF_1121 PF01695 IstB-like ATP binding protein YPDSF_1122 PF00486 Transcriptional regulatory protein, C terminal YPDSF_1122 PF00072 Response regulator receiver domain YPDSF_1123 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_1123 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_1123 PF00672 HAMP domain YPDSF_1131 PF08242 Methyltransferase domain YPDSF_1135 PF00872 Transposase, Mutator family YPDSF_1144 PF01370 NAD dependent epimerase/dehydratase family YPDSF_1145 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPDSF_1145 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPDSF_1146 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPDSF_1146 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPDSF_1148 PF05962 HutD YPDSF_1149 PF01979 Amidohydrolase family YPDSF_1150 PF07702 UTRA domain YPDSF_1150 PF00392 Bacterial regulatory proteins, gntR family YPDSF_1151 PF01979 Amidohydrolase family YPDSF_1152 PF00665 Integrase core domain YPDSF_1152 PF02796 Helix-turn-helix domain of resolvase YPDSF_1153 PF01695 IstB-like ATP binding protein YPDSF_1155 PF00872 Transposase, Mutator family YPDSF_1156 PF00267 Gram-negative porin YPDSF_1157 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family YPDSF_1158 PF04996 Succinylarginine dihydrolase YPDSF_1159 PF00171 Aldehyde dehydrogenase family YPDSF_1160 PF04958 Arginine N-succinyltransferase beta subunit YPDSF_1161 PF00202 Aminotransferase class-III YPDSF_1162 PF00155 Aminotransferase class I and II YPDSF_1162 PF00392 Bacterial regulatory proteins, gntR family YPDSF_1163 PF07730 Histidine kinase YPDSF_1163 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_1163 PF00672 HAMP domain YPDSF_1163 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term YPDSF_1164 PF01699 Sodium/calcium exchanger protein YPDSF_1165 PF02562 PhoH-like protein YPDSF_1168 PF13994 PgaD-like protein YPDSF_1169 PF00535 Glycosyl transferase family 2 YPDSF_1170 PF14883 Hypothetical glycosyl hydrolase family 13 YPDSF_1170 PF01522 Polysaccharide deacetylase YPDSF_1172 PF00557 Metallopeptidase family M24 YPDSF_1173 PF09313 Domain of unknown function (DUF1971) YPDSF_1173 PF03848 Tellurite resistance protein TehB YPDSF_1175 PF00578 AhpC/TSA family YPDSF_1176 PF12704 MacB-like periplasmic core domain YPDSF_1176 PF00005 ABC transporter YPDSF_1176 PF02687 FtsX-like permease family YPDSF_1178 PF12704 MacB-like periplasmic core domain YPDSF_1178 PF00005 ABC transporter YPDSF_1178 PF02687 FtsX-like permease family YPDSF_1180 PF10634 Fe2+ transport protein YPDSF_1184 PF04960 Glutaminase YPDSF_1186 PF08220 DeoR-like helix-turn-helix domain YPDSF_1186 PF00455 DeoR C terminal sensor domain YPDSF_1187 PF00324 Amino acid permease YPDSF_1188 PF00155 Aminotransferase class I and II YPDSF_1189 PF02508 Rnf-Nqr subunit, membrane protein YPDSF_1191 PF04909 Amidohydrolase YPDSF_1195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_1195 PF03466 LysR substrate binding domain YPDSF_1196 PF03328 HpcH/HpaI aldolase/citrate lyase family YPDSF_1197 PF01575 MaoC like domain YPDSF_1198 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain YPDSF_1198 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain YPDSF_1199 PF00196 Bacterial regulatory proteins, luxR family YPDSF_1199 PF00072 Response regulator receiver domain YPDSF_1200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_1200 PF00989 PAS fold YPDSF_1200 PF00072 Response regulator receiver domain YPDSF_1200 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPDSF_1200 PF01627 Hpt domain YPDSF_1200 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_1202 PF02753 Pili assembly chaperone PapD, C-terminal domain YPDSF_1202 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPDSF_1203 PF00577 Outer membrane usher protein YPDSF_1203 PF13953 PapC C-terminal domain YPDSF_1203 PF13954 PapC N-terminal domain YPDSF_1205 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPDSF_1205 PF02753 Pili assembly chaperone PapD, C-terminal domain YPDSF_1206 PF00872 Transposase, Mutator family YPDSF_1208 PF13356 Arm DNA-binding domain YPDSF_1208 PF00589 Phage integrase family YPDSF_1209 PF00425 chorismate binding enzyme YPDSF_1210 PF07690 Major Facilitator Superfamily YPDSF_1211 PF00005 ABC transporter YPDSF_1211 PF00664 ABC transporter transmembrane region YPDSF_1212 PF00005 ABC transporter YPDSF_1212 PF00664 ABC transporter transmembrane region YPDSF_1212 PF08021 Siderophore-interacting FAD-binding domain YPDSF_1212 PF04954 Siderophore-interacting protein YPDSF_1214 PF08242 Methyltransferase domain YPDSF_1214 PF00550 Phosphopantetheine attachment site YPDSF_1214 PF00501 AMP-binding enzyme YPDSF_1214 PF00668 Condensation domain YPDSF_1215 PF02801 Beta-ketoacyl synthase, C-terminal domain YPDSF_1215 PF00550 Phosphopantetheine attachment site YPDSF_1215 PF16197 Ketoacyl-synthetase C-terminal extension YPDSF_1215 PF00668 Condensation domain YPDSF_1215 PF00698 Acyl transferase domain YPDSF_1215 PF00109 Beta-ketoacyl synthase, N-terminal domain YPDSF_1217 PF00975 Thioesterase domain YPDSF_1218 PF13193 AMP-binding enzyme C-terminal domain YPDSF_1218 PF00501 AMP-binding enzyme YPDSF_1219 PF07715 TonB-dependent Receptor Plug Domain YPDSF_1219 PF00593 TonB dependent receptor YPDSF_1226 PF01695 IstB-like ATP binding protein YPDSF_1227 PF00665 Integrase core domain YPDSF_1227 PF02796 Helix-turn-helix domain of resolvase YPDSF_1231 PF08402 TOBE domain YPDSF_1231 PF00005 ABC transporter YPDSF_1232 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_1233 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_1234 PF01547 Bacterial extracellular solute-binding protein YPDSF_1235 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPDSF_1235 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPDSF_1242 PF00872 Transposase, Mutator family YPDSF_1243 PF00872 Transposase, Mutator family YPDSF_1255 PF05638 Type VI secretion system effector, Hcp YPDSF_1259 PF01066 CDP-alcohol phosphatidyltransferase YPDSF_1260 PF08459 UvrC Helix-hairpin-helix N-terminal YPDSF_1260 PF01541 GIY-YIG catalytic domain YPDSF_1260 PF02151 UvrB/uvrC motif YPDSF_1261 PF00196 Bacterial regulatory proteins, luxR family YPDSF_1261 PF00072 Response regulator receiver domain YPDSF_1262 PF10769 Protein of unknown function (DUF2594) YPDSF_1263 PF06942 GlpM protein YPDSF_1265 PF13505 Outer membrane protein beta-barrel domain YPDSF_1266 PF00324 Amino acid permease YPDSF_1267 PF01344 Kelch motif YPDSF_1268 PF03358 NADPH-dependent FMN reductase YPDSF_1269 PF04261 Dyp-type peroxidase family YPDSF_1270 PF13473 Cupredoxin-like domain YPDSF_1270 PF09375 Imelysin YPDSF_1271 PF03239 Iron permease FTR1 family YPDSF_1272 PF00474 Sodium:solute symporter family YPDSF_1274 PF01619 Proline dehydrogenase YPDSF_1274 PF14850 DNA-binding domain of Proline dehydrogenase YPDSF_1274 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPDSF_1274 PF00171 Aldehyde dehydrogenase family YPDSF_1281 PF00291 Pyridoxal-phosphate dependent enzyme YPDSF_1282 PF02899 Phage integrase, N-terminal SAM-like domain YPDSF_1283 PF04545 Sigma-70, region 4 YPDSF_1283 PF04539 Sigma-70 region 3 YPDSF_1283 PF04542 Sigma-70 region 2 YPDSF_1284 PF00700 Bacterial flagellin C-terminal helical region YPDSF_1284 PF08884 Flagellin D3 domain YPDSF_1284 PF00669 Bacterial flagellin N-terminal helical region YPDSF_1285 PF07196 Flagellin hook IN motif YPDSF_1285 PF02465 Flagellar hook-associated protein 2 N-terminus YPDSF_1285 PF07195 Flagellar hook-associated protein 2 C-terminus YPDSF_1286 PF02561 Flagellar protein FliS YPDSF_1287 PF05400 Flagellar protein FliT YPDSF_1288 PF12833 Helix-turn-helix domain YPDSF_1289 PF01966 HD domain YPDSF_1290 PF00730 HhH-GPD superfamily base excision DNA repair protein YPDSF_1293 PF02049 Flagellar hook-basal body complex protein FliE YPDSF_1294 PF08345 Flagellar M-ring protein C-terminal YPDSF_1294 PF01514 Secretory protein of YscJ/FliF family YPDSF_1295 PF01706 FliG C-terminal domain YPDSF_1295 PF14841 FliG middle domain YPDSF_1295 PF14842 FliG N-terminal domain YPDSF_1296 PF02108 Flagellar assembly protein FliH YPDSF_1297 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPDSF_1297 PF18269 T3SS EscN ATPase C-terminal domain YPDSF_1298 PF02050 Flagellar FliJ protein YPDSF_1299 PF02120 Flagellar hook-length control protein FliK YPDSF_1300 PF03748 Flagellar basal body-associated protein FliL YPDSF_1301 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPDSF_1301 PF02154 Flagellar motor switch protein FliM YPDSF_1302 PF16973 Flagellar motor switch protein FliN N-terminal YPDSF_1302 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPDSF_1303 PF04347 Flagellar biosynthesis protein, FliO YPDSF_1304 PF00813 FliP family YPDSF_1305 PF01313 Bacterial export proteins, family 3 YPDSF_1306 PF01311 Bacterial export proteins, family 1 YPDSF_1308 PF00294 pfkB family carbohydrate kinase YPDSF_1309 PF02653 Branched-chain amino acid transport system / permease component YPDSF_1310 PF00005 ABC transporter YPDSF_1311 PF13407 Periplasmic binding protein domain YPDSF_1312 PF02653 Branched-chain amino acid transport system / permease component YPDSF_1313 PF00596 Class II Aldolase and Adducin N-terminal domain YPDSF_1314 PF04198 Putative sugar-binding domain YPDSF_1315 PF00669 Bacterial flagellin N-terminal helical region YPDSF_1316 PF00460 Flagella basal body rod protein YPDSF_1316 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPDSF_1317 PF10135 Rod binding protein YPDSF_1317 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YPDSF_1318 PF02119 Flagellar P-ring protein YPDSF_1319 PF02107 Flagellar L-ring protein YPDSF_1320 PF00460 Flagella basal body rod protein YPDSF_1320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPDSF_1321 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPDSF_1321 PF00460 Flagella basal body rod protein YPDSF_1322 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPDSF_1322 PF00460 Flagella basal body rod protein YPDSF_1322 PF07559 Flagellar basal body protein FlaE YPDSF_1323 PF13860 FlgD Ig-like domain YPDSF_1323 PF13861 FlgD Tudor-like domain YPDSF_1323 PF03963 Flagellar hook capping protein - N-terminal region YPDSF_1324 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPDSF_1324 PF00460 Flagella basal body rod protein YPDSF_1325 PF00460 Flagella basal body rod protein YPDSF_1326 PF17656 FlgA N-terminal domain YPDSF_1326 PF13144 Chaperone for flagella basal body P-ring formation YPDSF_1327 PF04316 Anti-sigma-28 factor, FlgM YPDSF_1328 PF05130 FlgN protein YPDSF_1329 PF09134 Invasin, domain 3 YPDSF_1329 PF02369 Bacterial Ig-like domain (group 1) YPDSF_1329 PF07979 Intimin C-type lectin domain YPDSF_1329 PF11924 Inverse autotransporter, beta-domain YPDSF_1331 PF02369 Bacterial Ig-like domain (group 1) YPDSF_1331 PF11924 Inverse autotransporter, beta-domain YPDSF_1331 PF09134 Invasin, domain 3 YPDSF_1331 PF07979 Intimin C-type lectin domain YPDSF_1332 PF06366 Flagellar protein FlhE YPDSF_1333 PF00771 FHIPEP family YPDSF_1334 PF01312 FlhB HrpN YscU SpaS Family YPDSF_1337 PF10709 Protein of unknown function (DUF2511) YPDSF_1339 PF04234 CopC domain YPDSF_1340 PF00210 Ferritin-like domain YPDSF_1341 PF06440 DNA polymerase III, theta subunit YPDSF_1342 PF00561 alpha/beta hydrolase fold YPDSF_1343 PF00326 Prolyl oligopeptidase family YPDSF_1343 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YPDSF_1344 PF13995 YebF-like protein YPDSF_1346 PF07130 YebG protein YPDSF_1347 PF03880 DbpA RNA binding domain YPDSF_1347 PF00271 Helicase conserved C-terminal domain YPDSF_1347 PF00270 DEAD/DEAH box helicase YPDSF_1348 PF02222 ATP-grasp domain YPDSF_1349 PF03701 Uncharacterised protein family (UPF0181) YPDSF_1350 PF00425 chorismate binding enzyme YPDSF_1350 PF04715 Anthranilate synthase component I, N terminal region YPDSF_1351 PF00293 NUDIX domain YPDSF_1352 PF03313 Serine dehydratase alpha chain YPDSF_1352 PF03315 Serine dehydratase beta chain YPDSF_1353 PF01613 Flavin reductase like domain YPDSF_1354 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YPDSF_1354 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YPDSF_1355 PF07690 Major Facilitator Superfamily YPDSF_1356 PF03328 HpcH/HpaI aldolase/citrate lyase family YPDSF_1357 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPDSF_1358 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YPDSF_1359 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPDSF_1360 PF00171 Aldehyde dehydrogenase family YPDSF_1361 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPDSF_1362 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPDSF_1363 PF01047 MarR family YPDSF_1366 PF03830 PTS system sorbose subfamily IIB component YPDSF_1366 PF03610 PTS system fructose IIA component YPDSF_1367 PF03609 PTS system sorbose-specific iic component YPDSF_1368 PF03613 PTS system mannose/fructose/sorbose family IID component YPDSF_1369 PF06173 Protein of unknown function (DUF986) YPDSF_1370 PF02659 Putative manganese efflux pump YPDSF_1371 PF00593 TonB dependent receptor YPDSF_1371 PF07715 TonB-dependent Receptor Plug Domain YPDSF_1373 PF00563 EAL domain YPDSF_1373 PF13426 PAS domain YPDSF_1373 PF05231 MASE1 YPDSF_1373 PF08448 PAS fold YPDSF_1373 PF00990 Diguanylate cyclase, GGDEF domain YPDSF_1373 PF08447 PAS fold YPDSF_1375 PF13847 Methyltransferase domain YPDSF_1377 PF00313 'Cold-shock' DNA-binding domain YPDSF_1378 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YPDSF_1379 PF00324 Amino acid permease YPDSF_1382 PF13974 YebO-like protein YPDSF_1383 PF13996 YobH-like protein YPDSF_1384 PF10964 Protein of unknown function (DUF2766) YPDSF_1385 PF12833 Helix-turn-helix domain YPDSF_1387 PF00664 ABC transporter transmembrane region YPDSF_1387 PF00005 ABC transporter YPDSF_1388 PF01797 Transposase IS200 like YPDSF_1391 PF06167 Glucose-regulated metallo-peptidase M90 YPDSF_1392 PF00356 Bacterial regulatory proteins, lacI family YPDSF_1392 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPDSF_1393 PF01306 LacY proton/sugar symporter YPDSF_1394 PF16874 Glycosyl hydrolase family 36 C-terminal domain YPDSF_1394 PF16875 Glycosyl hydrolase family 36 N-terminal domain YPDSF_1396 PF01648 4'-phosphopantetheinyl transferase superfamily YPDSF_1396 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YPDSF_1397 PF03480 Bacterial extracellular solute-binding protein, family 7 YPDSF_1399 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YPDSF_1400 PF00196 Bacterial regulatory proteins, luxR family YPDSF_1400 PF00072 Response regulator receiver domain YPDSF_1401 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YPDSF_1403 PF01522 Polysaccharide deacetylase YPDSF_1405 PF01554 MatE YPDSF_1406 PF00764 Arginosuccinate synthase YPDSF_1407 PF01070 FMN-dependent dehydrogenase YPDSF_1408 PF13378 Enolase C-terminal domain-like YPDSF_1408 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPDSF_1409 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPDSF_1411 PF04134 Protein of unknown function, DUF393 YPDSF_1412 PF07690 Major Facilitator Superfamily YPDSF_1414 PF11924 Inverse autotransporter, beta-domain YPDSF_1414 PF02369 Bacterial Ig-like domain (group 1) YPDSF_1414 PF09134 Invasin, domain 3 YPDSF_1415 PF00872 Transposase, Mutator family YPDSF_1416 PF04363 Protein of unknown function (DUF496) YPDSF_1418 PF00929 Exonuclease YPDSF_1418 PF08411 Exonuclease C-terminal YPDSF_1419 PF13520 Amino acid permease YPDSF_1420 PF00465 Iron-containing alcohol dehydrogenase YPDSF_1423 PF00005 ABC transporter YPDSF_1424 PF02653 Branched-chain amino acid transport system / permease component YPDSF_1426 PF01370 NAD dependent epimerase/dehydratase family YPDSF_1427 PF01634 ATP phosphoribosyltransferase YPDSF_1427 PF08029 HisG, C-terminal domain YPDSF_1428 PF00815 Histidinol dehydrogenase YPDSF_1429 PF00155 Aminotransferase class I and II YPDSF_1430 PF00475 Imidazoleglycerol-phosphate dehydratase YPDSF_1431 PF00117 Glutamine amidotransferase class-I YPDSF_1432 PF00977 Histidine biosynthesis protein YPDSF_1433 PF00977 Histidine biosynthesis protein YPDSF_1434 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YPDSF_1434 PF01502 Phosphoribosyl-AMP cyclohydrolase YPDSF_1435 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPDSF_1435 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YPDSF_1436 PF00483 Nucleotidyl transferase YPDSF_1437 PF00483 Nucleotidyl transferase YPDSF_1438 PF06276 Ferric iron reductase FhuF-like transporter YPDSF_1438 PF04183 IucA / IucC family YPDSF_1439 PF00593 TonB dependent receptor YPDSF_1439 PF07660 Secretin and TonB N terminus short domain YPDSF_1439 PF07715 TonB-dependent Receptor Plug Domain YPDSF_1440 PF01497 Periplasmic binding protein YPDSF_1441 PF01032 FecCD transport family YPDSF_1442 PF01032 FecCD transport family YPDSF_1443 PF00005 ABC transporter YPDSF_1444 PF06276 Ferric iron reductase FhuF-like transporter YPDSF_1444 PF04183 IucA / IucC family YPDSF_1446 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPDSF_1447 PF00282 Pyridoxal-dependent decarboxylase conserved domain YPDSF_1448 PF06276 Ferric iron reductase FhuF-like transporter YPDSF_1448 PF11575 FhuF 2Fe-2S C-terminal domain YPDSF_1449 PF00571 CBS domain YPDSF_1449 PF03741 Integral membrane protein TerC family YPDSF_1449 PF03471 Transporter associated domain YPDSF_1450 PF05170 AsmA family YPDSF_1451 PF00692 dUTPase YPDSF_1452 PF00485 Phosphoribulokinase / Uridine kinase family YPDSF_1453 PF10609 NUBPL iron-transfer P-loop NTPase YPDSF_1454 PF09334 tRNA synthetases class I (M) YPDSF_1454 PF01588 Putative tRNA binding domain YPDSF_1455 PF01797 Transposase IS200 like YPDSF_1459 PF07690 Major Facilitator Superfamily YPDSF_1460 PF03788 LrgA family YPDSF_1461 PF04172 LrgB-like family YPDSF_1462 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YPDSF_1462 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPDSF_1463 PF03949 Malic enzyme, NAD binding domain YPDSF_1463 PF00390 Malic enzyme, N-terminal domain YPDSF_1464 PF02698 DUF218 domain YPDSF_1465 PF02653 Branched-chain amino acid transport system / permease component YPDSF_1466 PF02796 Helix-turn-helix domain of resolvase YPDSF_1466 PF00665 Integrase core domain YPDSF_1467 PF01695 IstB-like ATP binding protein YPDSF_1468 PF02653 Branched-chain amino acid transport system / permease component YPDSF_1469 PF00005 ABC transporter YPDSF_1470 PF13407 Periplasmic binding protein domain YPDSF_1471 PF04235 Protein of unknown function (DUF418) YPDSF_1472 PF01227 GTP cyclohydrolase I YPDSF_1473 PF06779 Uncharacterised MFS-type transporter YbfB YPDSF_1474 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_1474 PF03466 LysR substrate binding domain YPDSF_1475 PF00107 Zinc-binding dehydrogenase YPDSF_1475 PF08240 Alcohol dehydrogenase GroES-like domain YPDSF_1476 PF00756 Putative esterase YPDSF_1478 PF13533 Biotin-lipoyl like YPDSF_1479 PF00005 ABC transporter YPDSF_1481 PF03453 MoeA N-terminal region (domain I and II) YPDSF_1481 PF00994 Probable molybdopterin binding domain YPDSF_1481 PF03454 MoeA C-terminal region (domain IV) YPDSF_1482 PF00899 ThiF family YPDSF_1484 PF12848 ABC transporter YPDSF_1484 PF00005 ABC transporter YPDSF_1496 PF13358 DDE superfamily endonuclease YPDSF_1496 PF13592 Winged helix-turn helix YPDSF_1497 PF13592 Winged helix-turn helix YPDSF_1497 PF13358 DDE superfamily endonuclease YPDSF_1498 PF13358 DDE superfamily endonuclease YPDSF_1498 PF13592 Winged helix-turn helix YPDSF_1504 PF07724 AAA domain (Cdc48 subfamily) YPDSF_1504 PF00004 ATPase family associated with various cellular activities (AAA) YPDSF_1504 PF10431 C-terminal, D2-small domain, of ClpB protein YPDSF_1504 PF17871 AAA lid domain YPDSF_1507 PF00691 OmpA family YPDSF_1507 PF05736 OprF membrane domain YPDSF_1512 PF00698 Acyl transferase domain YPDSF_1515 PF00378 Enoyl-CoA hydratase/isomerase YPDSF_1517 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YPDSF_1517 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YPDSF_1519 PF00109 Beta-ketoacyl synthase, N-terminal domain YPDSF_1519 PF02801 Beta-ketoacyl synthase, C-terminal domain YPDSF_1520 PF07977 FabA-like domain YPDSF_1523 PF08031 Berberine and berberine like YPDSF_1523 PF01565 FAD binding domain YPDSF_1526 PF13610 DDE domain YPDSF_1527 PF04358 DsrC like protein YPDSF_1528 PF00708 Acylphosphatase YPDSF_1529 PF10672 S-adenosylmethionine-dependent methyltransferase YPDSF_1529 PF17785 PUA-like domain YPDSF_1530 PF08755 Hemimethylated DNA-binding protein YccV like YPDSF_1531 PF13380 CoA binding domain YPDSF_1532 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YPDSF_1533 PF02142 MGS-like domain YPDSF_1534 PF00580 UvrD/REP helicase N-terminal domain YPDSF_1534 PF13361 UvrD-like helicase C-terminal domain YPDSF_1534 PF12462 DNA helicase IV / RNA helicase N terminal YPDSF_1535 PF03733 Inner membrane component domain YPDSF_1536 PF12805 FUSC-like inner membrane protein yccS YPDSF_1537 PF04993 TfoX N-terminal domain YPDSF_1537 PF04994 TfoX C-terminal domain YPDSF_1538 PF03846 Cell division inhibitor SulA YPDSF_1539 PF00691 OmpA family YPDSF_1539 PF01389 OmpA-like transmembrane domain YPDSF_1540 PF01797 Transposase IS200 like YPDSF_1541 PF06303 MatP N-terminal domain YPDSF_1541 PF17414 MatP C-terminal ribbon-helix-helix domain YPDSF_1542 PF13654 AAA domain YPDSF_1542 PF05362 Lon protease (S16) C-terminal proteolytic domain YPDSF_1543 PF07977 FabA-like domain YPDSF_1544 PF00109 Beta-ketoacyl synthase, N-terminal domain YPDSF_1544 PF02801 Beta-ketoacyl synthase, C-terminal domain YPDSF_1545 PF02796 Helix-turn-helix domain of resolvase YPDSF_1545 PF00665 Integrase core domain YPDSF_1546 PF01695 IstB-like ATP binding protein YPDSF_1547 PF00109 Beta-ketoacyl synthase, N-terminal domain YPDSF_1547 PF02801 Beta-ketoacyl synthase, C-terminal domain YPDSF_1548 PF01797 Transposase IS200 like YPDSF_1549 PF01648 4'-phosphopantetheinyl transferase superfamily YPDSF_1550 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YPDSF_1551 PF11967 Recombination protein O N terminal YPDSF_1551 PF02565 Recombination protein O C terminal YPDSF_1552 PF01926 50S ribosome-binding GTPase YPDSF_1552 PF07650 KH domain YPDSF_1553 PF14622 Ribonuclease-III-like YPDSF_1553 PF00035 Double-stranded RNA binding motif YPDSF_1554 PF10502 Signal peptidase, peptidase S26 YPDSF_1555 PF00679 Elongation factor G C-terminus YPDSF_1555 PF00009 Elongation factor Tu GTP binding domain YPDSF_1555 PF03144 Elongation factor Tu domain 2 YPDSF_1555 PF06421 GTP-binding protein LepA C-terminus YPDSF_1558 PF17188 MucB/RseB C-terminal domain YPDSF_1558 PF03888 MucB/RseB N-terminal domain YPDSF_1559 PF03872 Anti sigma-E protein RseA, N-terminal domain YPDSF_1559 PF03873 Anti sigma-E protein RseA, C-terminal domain YPDSF_1560 PF04542 Sigma-70 region 2 YPDSF_1560 PF08281 Sigma-70, region 4 YPDSF_1561 PF02910 Fumarate reductase flavoprotein C-term YPDSF_1561 PF00890 FAD binding domain YPDSF_1562 PF05175 Methyltransferase small domain YPDSF_1563 PF00271 Helicase conserved C-terminal domain YPDSF_1563 PF00270 DEAD/DEAH box helicase YPDSF_1564 PF12796 Ankyrin repeats (3 copies) YPDSF_1566 PF01228 Glycine radical YPDSF_1567 PF03167 Uracil DNA glycosylase superfamily YPDSF_1568 PF01470 Pyroglutamyl peptidase YPDSF_1571 PF03746 LamB/YcsF family YPDSF_1572 PF02626 Carboxyltransferase domain, subdomain A and B YPDSF_1573 PF02682 Carboxyltransferase domain, subdomain C and D YPDSF_1574 PF01784 NIF3 (NGG1p interacting factor 3) YPDSF_1575 PF02112 cAMP phosphodiesterases class-II YPDSF_1576 PF03441 FAD binding domain of DNA photolyase YPDSF_1576 PF00875 DNA photolyase YPDSF_1577 PF08349 Protein of unknown function (DUF1722) YPDSF_1578 PF10725 Protein of unknown function (DUF2517) YPDSF_1580 PF03814 Potassium-transporting ATPase A subunit YPDSF_1582 PF02669 K+-transporting ATPase, c chain YPDSF_1585 PF00486 Transcriptional regulatory protein, C terminal YPDSF_1585 PF00072 Response regulator receiver domain YPDSF_1589 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPDSF_1589 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPDSF_1589 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPDSF_1589 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPDSF_1590 PF03925 SeqA protein C-terminal domain YPDSF_1590 PF17206 SeqA protein N-terminal domain YPDSF_1592 PF04794 YdjC-like protein YPDSF_1593 PF12833 Helix-turn-helix domain YPDSF_1593 PF07883 Cupin domain YPDSF_1594 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YPDSF_1595 PF02378 Phosphotransferase system, EIIC YPDSF_1596 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPDSF_1598 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPDSF_1599 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPDSF_1600 PF07885 Ion channel YPDSF_1600 PF02254 TrkA-N domain YPDSF_1601 PF06411 HdeA/HdeB family YPDSF_1602 PF03824 High-affinity nickel-transport protein YPDSF_1603 PF03253 Urea transporter YPDSF_1604 PF01774 UreD urease accessory protein YPDSF_1605 PF01774 UreD urease accessory protein YPDSF_1606 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPDSF_1607 PF01730 UreF YPDSF_1608 PF05194 UreE urease accessory protein, C-terminal domain YPDSF_1608 PF02814 UreE urease accessory protein, N-terminal domain YPDSF_1609 PF01979 Amidohydrolase family YPDSF_1609 PF00449 Urease alpha-subunit, N-terminal domain YPDSF_1610 PF00699 Urease beta subunit YPDSF_1611 PF00547 Urease, gamma subunit YPDSF_1612 PF00005 ABC transporter YPDSF_1613 PF00005 ABC transporter YPDSF_1614 PF12911 N-terminal TM domain of oligopeptide transport permease C YPDSF_1614 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_1615 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_1616 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPDSF_1617 PF00313 'Cold-shock' DNA-binding domain YPDSF_1619 PF06711 Protein of unknown function (DUF1198) YPDSF_1620 PF09400 Protein of unknown function (DUF2002) YPDSF_1621 PF06392 Acid shock protein repeat YPDSF_1622 PF07972 NrdI Flavodoxin like YPDSF_1623 PF08343 Ribonucleotide reductase N-terminal YPDSF_1623 PF00317 Ribonucleotide reductase, all-alpha domain YPDSF_1623 PF02867 Ribonucleotide reductase, barrel domain YPDSF_1624 PF00268 Ribonucleotide reductase, small chain YPDSF_1625 PF00571 CBS domain YPDSF_1625 PF00005 ABC transporter YPDSF_1626 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_1627 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPDSF_1629 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YPDSF_1630 PF00929 Exonuclease YPDSF_1631 PF00075 RNase H YPDSF_1632 PF08241 Methyltransferase domain YPDSF_1633 PF00753 Metallo-beta-lactamase superfamily YPDSF_1633 PF16123 Hydroxyacylglutathione hydrolase C-terminus YPDSF_1634 PF01464 Transglycosylase SLT domain YPDSF_1634 PF01476 LysM domain YPDSF_1635 PF03372 Endonuclease/Exonuclease/phosphatase family YPDSF_1636 PF00248 Aldo/keto reductase family YPDSF_1638 PF09383 NIL domain YPDSF_1638 PF00005 ABC transporter YPDSF_1639 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_1640 PF03180 NLPA lipoprotein YPDSF_1641 PF16358 RcsF lipoprotein YPDSF_1642 PF18389 TrmO C-terminal domain YPDSF_1642 PF01980 tRNA-methyltransferase O YPDSF_1643 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPDSF_1643 PF03129 Anticodon binding domain YPDSF_1643 PF04073 Aminoacyl-tRNA editing domain YPDSF_1644 PF04170 NlpE N-terminal domain YPDSF_1644 PF17185 NlpE C-terminal OB domain YPDSF_1645 PF00472 RF-1 domain YPDSF_1646 PF07152 YaeQ protein YPDSF_1647 PF06786 Uncharacterised protein family (UPF0253) YPDSF_1648 PF07073 Modulator of Rho-dependent transcription termination (ROF) YPDSF_1649 PF00034 Cytochrome c YPDSF_1650 PF01171 PP-loop family YPDSF_1650 PF09179 TilS substrate binding domain YPDSF_1650 PF11734 TilS substrate C-terminal domain YPDSF_1651 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPDSF_1652 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YPDSF_1653 PF02811 PHP domain YPDSF_1653 PF14579 Helix-hairpin-helix motif YPDSF_1653 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPDSF_1653 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPDSF_1653 PF01336 OB-fold nucleic acid binding domain YPDSF_1654 PF01351 Ribonuclease HII YPDSF_1655 PF02684 Lipid-A-disaccharide synthetase YPDSF_1656 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YPDSF_1656 PF00132 Bacterial transferase hexapeptide (six repeats) YPDSF_1657 PF07977 FabA-like domain YPDSF_1658 PF00132 Bacterial transferase hexapeptide (six repeats) YPDSF_1658 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YPDSF_1659 PF03938 Outer membrane protein (OmpH-like) YPDSF_1660 PF01103 Surface antigen YPDSF_1660 PF07244 Surface antigen variable number repeat YPDSF_1661 PF02163 Peptidase family M50 YPDSF_1661 PF17820 PDZ domain YPDSF_1663 PF01255 Putative undecaprenyl diphosphate synthase YPDSF_1664 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPDSF_1664 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YPDSF_1664 PF13288 DXP reductoisomerase C-terminal domain YPDSF_1665 PF01765 Ribosome recycling factor YPDSF_1666 PF00696 Amino acid kinase family YPDSF_1668 PF00889 Elongation factor TS YPDSF_1669 PF00318 Ribosomal protein S2 YPDSF_1670 PF00557 Metallopeptidase family M24 YPDSF_1671 PF01909 Nucleotidyltransferase domain YPDSF_1671 PF01842 ACT domain YPDSF_1671 PF01966 HD domain YPDSF_1671 PF08335 GlnD PII-uridylyltransferase YPDSF_1672 PF14602 Hexapeptide repeat of succinyl-transferase YPDSF_1672 PF00132 Bacterial transferase hexapeptide (six repeats) YPDSF_1672 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YPDSF_1673 PF11944 Protein of unknown function (DUF3461) YPDSF_1674 PF00258 Flavodoxin YPDSF_1675 PF00849 RNA pseudouridylate synthase YPDSF_1676 PF04287 tRNA pseudouridine synthase C YPDSF_1677 PF01797 Transposase IS200 like YPDSF_1678 PF07348 Syd protein (SUKH-2) YPDSF_1679 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YPDSF_1679 PF14489 QueF-like protein YPDSF_1680 PF03641 Possible lysine decarboxylase YPDSF_1680 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YPDSF_1680 PF11892 Domain of unknown function (DUF3412) YPDSF_1681 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPDSF_1681 PF01367 5'-3' exonuclease, C-terminal SAM fold YPDSF_1682 PF18125 RlmM ferredoxin-like domain YPDSF_1682 PF01728 FtsJ-like methyltransferase YPDSF_1683 PF04241 Protein of unknown function (DUF423) YPDSF_1684 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_1684 PF03466 LysR substrate binding domain YPDSF_1685 PF00266 Aminotransferase class-V YPDSF_1686 PF02657 Fe-S metabolism associated domain YPDSF_1687 PF00899 ThiF family YPDSF_1688 PF06725 3D domain YPDSF_1688 PF03562 MltA specific insert domain YPDSF_1689 PF11741 AMIN domain YPDSF_1689 PF01520 N-acetylmuramoyl-L-alanine amidase YPDSF_1690 PF00696 Amino acid kinase family YPDSF_1690 PF00583 Acetyltransferase (GNAT) family YPDSF_1691 PF00665 Integrase core domain YPDSF_1691 PF02796 Helix-turn-helix domain of resolvase YPDSF_1692 PF01695 IstB-like ATP binding protein YPDSF_1693 PF00696 Amino acid kinase family YPDSF_1693 PF00583 Acetyltransferase (GNAT) family YPDSF_1694 PF13538 UvrD-like helicase C-terminal domain YPDSF_1695 PF00580 UvrD/REP helicase N-terminal domain YPDSF_1695 PF12705 PD-(D/E)XK nuclease superfamily YPDSF_1695 PF13361 UvrD-like helicase C-terminal domain YPDSF_1696 PF16187 Middle or third domain of peptidase_M16 YPDSF_1696 PF00675 Insulinase (Peptidase family M16) YPDSF_1696 PF05193 Peptidase M16 inactive domain YPDSF_1697 PF17946 RecC C-terminal domain YPDSF_1702 PF00303 Thymidylate synthase YPDSF_1703 PF01790 Prolipoprotein diacylglyceryl transferase YPDSF_1704 PF02896 PEP-utilising enzyme, TIM barrel domain YPDSF_1704 PF05524 PEP-utilising enzyme, N-terminal YPDSF_1704 PF00391 PEP-utilising enzyme, mobile domain YPDSF_1704 PF01590 GAF domain YPDSF_1705 PF00293 NUDIX domain YPDSF_1706 PF02976 DNA mismatch repair enzyme MutH YPDSF_1707 PF00248 Aldo/keto reductase family YPDSF_1709 PF07690 Major Facilitator Superfamily YPDSF_1710 PF00501 AMP-binding enzyme YPDSF_1710 PF01553 Acyltransferase YPDSF_1710 PF13193 AMP-binding enzyme C-terminal domain YPDSF_1711 PF00384 Molybdopterin oxidoreductase YPDSF_1711 PF01568 Molydopterin dinucleotide binding domain YPDSF_1712 PF00356 Bacterial regulatory proteins, lacI family YPDSF_1713 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPDSF_1713 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YPDSF_1714 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_1714 PF03466 LysR substrate binding domain YPDSF_1715 PF07690 Major Facilitator Superfamily YPDSF_1716 PF03466 LysR substrate binding domain YPDSF_1716 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_1719 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_1719 PF00672 HAMP domain YPDSF_1719 PF02203 Tar ligand binding domain homologue YPDSF_1721 PF00872 Transposase, Mutator family YPDSF_1722 PF07883 Cupin domain YPDSF_1723 PF04962 KduI/IolB family YPDSF_1725 PF06917 Periplasmic pectate lyase YPDSF_1726 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_1727 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_1728 PF03459 TOBE domain YPDSF_1728 PF17912 MalK OB fold domain YPDSF_1728 PF00005 ABC transporter YPDSF_1729 PF01547 Bacterial extracellular solute-binding protein YPDSF_1730 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPDSF_1731 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPDSF_1733 PF01510 N-acetylmuramoyl-L-alanine amidase YPDSF_1734 PF01614 Bacterial transcriptional regulator YPDSF_1734 PF09339 IclR helix-turn-helix domain YPDSF_1735 PF14583 Oligogalacturonate lyase YPDSF_1736 PF07690 Major Facilitator Superfamily YPDSF_1737 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPDSF_1737 PF02753 Pili assembly chaperone PapD, C-terminal domain YPDSF_1739 PF13953 PapC C-terminal domain YPDSF_1739 PF13954 PapC N-terminal domain YPDSF_1739 PF00577 Outer membrane usher protein YPDSF_1740 PF02753 Pili assembly chaperone PapD, C-terminal domain YPDSF_1740 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPDSF_1741 PF00419 Fimbrial protein YPDSF_1742 PF01435 Peptidase family M48 YPDSF_1743 PF17804 Tail specific protease N-terminal domain YPDSF_1743 PF11818 C-terminal domain of tail specific protease (DUF3340) YPDSF_1743 PF00595 PDZ domain YPDSF_1743 PF03572 Peptidase family S41 YPDSF_1744 PF04352 ProQ/FINO family YPDSF_1744 PF17516 ProQ C-terminal domain YPDSF_1745 PF13185 GAF domain YPDSF_1746 PF04403 Paraquat-inducible protein A YPDSF_1747 PF02470 MlaD protein YPDSF_1751 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPDSF_1751 PF02753 Pili assembly chaperone PapD, C-terminal domain YPDSF_1754 PF07351 Protein of unknown function (DUF1480) YPDSF_1757 PF02796 Helix-turn-helix domain of resolvase YPDSF_1757 PF00665 Integrase core domain YPDSF_1758 PF01695 IstB-like ATP binding protein YPDSF_1761 PF01168 Alanine racemase, N-terminal domain YPDSF_1761 PF00842 Alanine racemase, C-terminal domain YPDSF_1763 PF03895 YadA-like membrane anchor domain YPDSF_1763 PF13018 Extended Signal Peptide of Type V secretion system YPDSF_1763 PF05658 Head domain of trimeric autotransporter adhesin YPDSF_1763 PF05662 Coiled stalk of trimeric autotransporter adhesin YPDSF_1764 PF05658 Head domain of trimeric autotransporter adhesin YPDSF_1764 PF05662 Coiled stalk of trimeric autotransporter adhesin YPDSF_1764 PF13018 Extended Signal Peptide of Type V secretion system YPDSF_1764 PF03895 YadA-like membrane anchor domain YPDSF_1765 PF01510 N-acetylmuramoyl-L-alanine amidase YPDSF_1767 PF04344 Chemotaxis phosphatase, CheZ YPDSF_1768 PF00072 Response regulator receiver domain YPDSF_1769 PF01339 CheB methylesterase YPDSF_1769 PF00072 Response regulator receiver domain YPDSF_1770 PF03705 CheR methyltransferase, all-alpha domain YPDSF_1770 PF01739 CheR methyltransferase, SAM binding domain YPDSF_1771 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_1771 PF02203 Tar ligand binding domain homologue YPDSF_1771 PF00672 HAMP domain YPDSF_1772 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_1772 PF00672 HAMP domain YPDSF_1772 PF02203 Tar ligand binding domain homologue YPDSF_1775 PF12951 Passenger-associated-transport-repeat YPDSF_1776 PF08348 YheO-like PAS domain YPDSF_1776 PF13309 HTH domain YPDSF_1778 PF01042 Endoribonuclease L-PSP YPDSF_1779 PF07690 Major Facilitator Superfamily YPDSF_1780 PF01584 CheW-like domain YPDSF_1781 PF01584 CheW-like domain YPDSF_1781 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_1781 PF01627 Hpt domain YPDSF_1781 PF02895 Signal transducing histidine kinase, homodimeric domain YPDSF_1781 PF09078 CheY binding YPDSF_1782 PF00691 OmpA family YPDSF_1782 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPDSF_1783 PF01618 MotA/TolQ/ExbB proton channel family YPDSF_1784 PF05280 Flagellar transcriptional activator (FlhC) YPDSF_1785 PF05247 Flagellar transcriptional activator (FlhD) YPDSF_1786 PF00690 Cation transporter/ATPase, N-terminus YPDSF_1786 PF00689 Cation transporting ATPase, C-terminus YPDSF_1787 PF02308 MgtC family YPDSF_1788 PF02203 Tar ligand binding domain homologue YPDSF_1788 PF00672 HAMP domain YPDSF_1788 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_1789 PF00672 HAMP domain YPDSF_1789 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_1789 PF02203 Tar ligand binding domain homologue YPDSF_1790 PF10781 Dextransucrase DSRB YPDSF_1791 PF00313 'Cold-shock' DNA-binding domain YPDSF_1792 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YPDSF_1792 PF00703 Glycosyl hydrolases family 2 YPDSF_1792 PF16353 Domain of unknown function(DUF4981) YPDSF_1792 PF02837 Glycosyl hydrolases family 2, sugar binding domain YPDSF_1792 PF02929 Beta galactosidase small chain YPDSF_1793 PF14765 Polyketide synthase dehydratase YPDSF_1793 PF00550 Phosphopantetheine attachment site YPDSF_1793 PF08659 KR domain YPDSF_1793 PF00698 Acyl transferase domain YPDSF_1793 PF08240 Alcohol dehydrogenase GroES-like domain YPDSF_1793 PF00107 Zinc-binding dehydrogenase YPDSF_1793 PF02801 Beta-ketoacyl synthase, C-terminal domain YPDSF_1793 PF00109 Beta-ketoacyl synthase, N-terminal domain YPDSF_1793 PF16197 Ketoacyl-synthetase C-terminal extension YPDSF_1794 PF10777 Inner membrane protein YlaC YPDSF_1796 PF13404 AsnC-type helix-turn-helix domain YPDSF_1796 PF01037 Lrp/AsnC ligand binding domain YPDSF_1798 PF14001 YdfZ protein YPDSF_1799 PF00328 Histidine phosphatase superfamily (branch 2) YPDSF_1802 PF01638 HxlR-like helix-turn-helix YPDSF_1803 PF05368 NmrA-like family YPDSF_1804 PF08447 PAS fold YPDSF_1804 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_1806 PF00356 Bacterial regulatory proteins, lacI family YPDSF_1806 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPDSF_1807 PF00180 Isocitrate/isopropylmalate dehydrogenase YPDSF_1808 PF00849 RNA pseudouridylate synthase YPDSF_1809 PF00293 NUDIX domain YPDSF_1811 PF04356 Protein of unknown function (DUF489) YPDSF_1812 PF00206 Lyase YPDSF_1812 PF08328 Adenylosuccinate lyase C-terminal YPDSF_1814 PF00072 Response regulator receiver domain YPDSF_1814 PF00486 Transcriptional regulatory protein, C terminal YPDSF_1815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_1815 PF08918 PhoQ Sensor YPDSF_1816 PF08007 Cupin superfamily protein YPDSF_1817 PF07687 Peptidase dimerisation domain YPDSF_1817 PF01546 Peptidase family M20/M25/M40 YPDSF_1818 PF02146 Sir2 family YPDSF_1819 PF00480 ROK family YPDSF_1820 PF00480 ROK family YPDSF_1821 PF12704 MacB-like periplasmic core domain YPDSF_1821 PF02687 FtsX-like permease family YPDSF_1822 PF00005 ABC transporter YPDSF_1823 PF02687 FtsX-like permease family YPDSF_1823 PF12704 MacB-like periplasmic core domain YPDSF_1824 PF03461 TRCF domain YPDSF_1824 PF02559 CarD-like/TRCF domain YPDSF_1824 PF00270 DEAD/DEAH box helicase YPDSF_1824 PF00271 Helicase conserved C-terminal domain YPDSF_1824 PF17757 UvrB interaction domain YPDSF_1825 PF05433 Glycine zipper 2TM domain YPDSF_1826 PF00872 Transposase, Mutator family YPDSF_1830 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPDSF_1831 PF05728 Uncharacterised protein family (UPF0227) YPDSF_1832 PF00933 Glycosyl hydrolase family 3 N terminal domain YPDSF_1833 PF01636 Phosphotransferase enzyme family YPDSF_1834 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPDSF_1834 PF13036 Peptidoglycan-synthase activator LpoB YPDSF_1835 PF07233 Protein of unknown function (DUF1425) YPDSF_1836 PF01230 HIT domain YPDSF_1837 PF08501 Shikimate dehydrogenase substrate binding domain YPDSF_1839 PF02378 Phosphotransferase system, EIIC YPDSF_1839 PF00367 phosphotransferase system, EIIB YPDSF_1840 PF01026 TatD related DNase YPDSF_1841 PF09115 DNA polymerase III, delta subunit, C terminal YPDSF_1842 PF02223 Thymidylate kinase YPDSF_1843 PF02618 YceG-like family YPDSF_1844 PF01063 Amino-transferase class IV YPDSF_1845 PF01797 Transposase IS200 like YPDSF_1846 PF02801 Beta-ketoacyl synthase, C-terminal domain YPDSF_1846 PF00109 Beta-ketoacyl synthase, N-terminal domain YPDSF_1847 PF00550 Phosphopantetheine attachment site YPDSF_1849 PF00698 Acyl transferase domain YPDSF_1850 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPDSF_1850 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPDSF_1851 PF02504 Fatty acid synthesis protein YPDSF_1852 PF01783 Ribosomal L32p protein family YPDSF_1853 PF02620 Large ribosomal RNA subunit accumulation protein YceD YPDSF_1854 PF02545 Maf-like protein YPDSF_1855 PF01479 S4 domain YPDSF_1855 PF00849 RNA pseudouridylate synthase YPDSF_1856 PF10150 Ribonuclease E/G family YPDSF_1856 PF00575 S1 RNA binding domain YPDSF_1856 PF12111 Polyribonucleotide phosphorylase C terminal YPDSF_1858 PF03992 Antibiotic biosynthesis monooxygenase YPDSF_1859 PF01979 Amidohydrolase family YPDSF_1860 PF06183 DinI-like family YPDSF_1861 PF13991 BssS protein family YPDSF_1862 PF00872 Transposase, Mutator family YPDSF_1863 PF01266 FAD dependent oxidoreductase YPDSF_1864 PF00196 Bacterial regulatory proteins, luxR family YPDSF_1865 PF01594 AI-2E family transporter YPDSF_1871 PF00765 Autoinducer synthase YPDSF_1872 PF00196 Bacterial regulatory proteins, luxR family YPDSF_1872 PF03472 Autoinducer binding domain YPDSF_1873 PF03466 LysR substrate binding domain YPDSF_1873 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_1874 PF00083 Sugar (and other) transporter YPDSF_1876 PF00248 Aldo/keto reductase family YPDSF_1877 PF09618 CRISPR-associated protein (Cas_Csy4) YPDSF_1878 PF09615 CRISPR-associated protein (Cas_Csy3) YPDSF_1879 PF09614 CRISPR-associated protein (Cas_Csy2) YPDSF_1880 PF09611 CRISPR-associated protein (Cas_Csy1) YPDSF_1882 PF01867 CRISPR associated protein Cas1 YPDSF_1883 PF00924 Mechanosensitive ion channel YPDSF_1887 PF04041 beta-1,4-mannooligosaccharide phosphorylase YPDSF_1888 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_1889 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_1891 PF00356 Bacterial regulatory proteins, lacI family YPDSF_1892 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPDSF_1892 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPDSF_1892 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPDSF_1892 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPDSF_1893 PF00005 ABC transporter YPDSF_1893 PF17912 MalK OB fold domain YPDSF_1896 PF04829 Pre-toxin domain with VENN motif YPDSF_1896 PF13332 Hemagglutinin repeat YPDSF_1896 PF05860 haemagglutination activity domain YPDSF_1896 PF15526 Novel toxin 21 YPDSF_1896 PF05594 Haemagluttinin repeat YPDSF_1899 PF13018 Extended Signal Peptide of Type V secretion system YPDSF_1899 PF13332 Hemagglutinin repeat YPDSF_1899 PF05860 haemagglutination activity domain YPDSF_1899 PF04829 Pre-toxin domain with VENN motif YPDSF_1902 PF04829 Pre-toxin domain with VENN motif YPDSF_1902 PF13332 Hemagglutinin repeat YPDSF_1902 PF05860 haemagglutination activity domain YPDSF_1902 PF13018 Extended Signal Peptide of Type V secretion system YPDSF_1903 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPDSF_1903 PF17287 POTRA domain YPDSF_1903 PF08479 POTRA domain, ShlB-type YPDSF_1904 PF00175 Oxidoreductase NAD-binding domain YPDSF_1904 PF00111 2Fe-2S iron-sulfur cluster binding domain YPDSF_1904 PF00970 Oxidoreductase FAD-binding domain YPDSF_1905 PF00355 Rieske [2Fe-2S] domain YPDSF_1905 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YPDSF_1906 PF02028 BCCT, betaine/carnitine/choline family transporter YPDSF_1907 PF00180 Isocitrate/isopropylmalate dehydrogenase YPDSF_1908 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_1908 PF03466 LysR substrate binding domain YPDSF_1909 PF00356 Bacterial regulatory proteins, lacI family YPDSF_1910 PF02653 Branched-chain amino acid transport system / permease component YPDSF_1913 PF13407 Periplasmic binding protein domain YPDSF_1914 PF08240 Alcohol dehydrogenase GroES-like domain YPDSF_1914 PF00107 Zinc-binding dehydrogenase YPDSF_1918 PF13505 Outer membrane protein beta-barrel domain YPDSF_1919 PF00892 EamA-like transporter family YPDSF_1921 PF13649 Methyltransferase domain YPDSF_1922 PF00210 Ferritin-like domain YPDSF_1924 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPDSF_1925 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_1926 PF00005 ABC transporter YPDSF_1927 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_1927 PF08447 PAS fold YPDSF_1927 PF13426 PAS domain YPDSF_1929 PF05971 RNA methyltransferase YPDSF_1930 PF07338 Protein of unknown function (DUF1471) YPDSF_1932 PF02885 Glycosyl transferase family, helical bundle domain YPDSF_1933 PF13193 AMP-binding enzyme C-terminal domain YPDSF_1933 PF00501 AMP-binding enzyme YPDSF_1934 PF13378 Enolase C-terminal domain-like YPDSF_1935 PF00378 Enoyl-CoA hydratase/isomerase YPDSF_1936 PF12697 Alpha/beta hydrolase family YPDSF_1937 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPDSF_1937 PF16582 Middle domain of thiamine pyrophosphate YPDSF_1937 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPDSF_1938 PF00425 chorismate binding enzyme YPDSF_1940 PF05957 Bacterial protein of unknown function (DUF883) YPDSF_1943 PF00920 Dehydratase family YPDSF_1944 PF03928 Haem-degrading YPDSF_1945 PF07690 Major Facilitator Superfamily YPDSF_1946 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPDSF_1946 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPDSF_1947 PF00356 Bacterial regulatory proteins, lacI family YPDSF_1949 PF00106 short chain dehydrogenase YPDSF_1950 PF01202 Shikimate kinase YPDSF_1951 PF04074 YhcH/YjgK/YiaL YPDSF_1953 PF00361 Proton-conducting membrane transporter YPDSF_1954 PF00361 Proton-conducting membrane transporter YPDSF_1955 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YPDSF_1955 PF00361 Proton-conducting membrane transporter YPDSF_1956 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YPDSF_1957 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YPDSF_1958 PF12838 4Fe-4S dicluster domain YPDSF_1959 PF00146 NADH dehydrogenase YPDSF_1960 PF00384 Molybdopterin oxidoreductase YPDSF_1960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPDSF_1960 PF01568 Molydopterin dinucleotide binding domain YPDSF_1960 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPDSF_1961 PF10531 SLBB domain YPDSF_1961 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPDSF_1961 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPDSF_1963 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YPDSF_1963 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YPDSF_1964 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YPDSF_1965 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YPDSF_1966 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_1966 PF03466 LysR substrate binding domain YPDSF_1967 PF00155 Aminotransferase class I and II YPDSF_1969 PF02080 TrkA-C domain YPDSF_1969 PF03600 Citrate transporter YPDSF_1970 PF13419 Haloacid dehalogenase-like hydrolase YPDSF_1971 PF03887 YfbU domain YPDSF_1972 PF04217 Protein of unknown function, DUF412 YPDSF_1973 PF00871 Acetokinase family YPDSF_1974 PF01515 Phosphate acetyl/butaryl transferase YPDSF_1974 PF07085 DRTGG domain YPDSF_1975 PF00356 Bacterial regulatory proteins, lacI family YPDSF_1975 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPDSF_1976 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPDSF_1978 PF03611 PTS system sugar-specific permease component YPDSF_1979 PF00293 NUDIX domain YPDSF_1983 PF01370 NAD dependent epimerase/dehydratase family YPDSF_1983 PF08338 Domain of unknown function (DUF1731) YPDSF_1984 PF00005 ABC transporter YPDSF_1985 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_1986 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_1987 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPDSF_1988 PF02441 Flavoprotein YPDSF_1989 PF00156 Phosphoribosyl transferase domain YPDSF_1990 PF02674 Colicin V production protein YPDSF_1991 PF05036 Sporulation related domain YPDSF_1992 PF02875 Mur ligase family, glutamate ligase domain YPDSF_1992 PF08245 Mur ligase middle domain YPDSF_1993 PF01039 Carboxyl transferase domain YPDSF_1993 PF17848 Acetyl-coA carboxylase zinc finger domain YPDSF_1994 PF09335 SNARE associated Golgi protein YPDSF_1995 PF01416 tRNA pseudouridine synthase YPDSF_1996 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPDSF_1996 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPDSF_1997 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPDSF_1997 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPDSF_1997 PF11890 Domain of unknown function (DUF3410) YPDSF_1999 PF00892 EamA-like transporter family YPDSF_2001 PF00419 Fimbrial protein YPDSF_2002 PF01177 Asp/Glu/Hydantoin racemase YPDSF_2003 PF02801 Beta-ketoacyl synthase, C-terminal domain YPDSF_2003 PF00109 Beta-ketoacyl synthase, N-terminal domain YPDSF_2004 PF01266 FAD dependent oxidoreductase YPDSF_2004 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_2005 PF08891 YfcL protein YPDSF_2006 PF04315 Elongation factor P hydroxylase YPDSF_2007 PF01925 Sulfite exporter TauE/SafE YPDSF_2008 PF03411 Penicillin-insensitive murein endopeptidase YPDSF_2009 PF01264 Chorismate synthase YPDSF_2010 PF05175 Methyltransferase small domain YPDSF_2011 PF01713 Smr domain YPDSF_2012 PF00300 Histidine phosphatase superfamily (branch 1) YPDSF_2013 PF00378 Enoyl-CoA hydratase/isomerase YPDSF_2013 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPDSF_2013 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPDSF_2014 PF00108 Thiolase, N-terminal domain YPDSF_2014 PF02803 Thiolase, C-terminal domain YPDSF_2015 PF04175 Protein of unknown function (DUF406) YPDSF_2016 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPDSF_2017 PF04333 MlaA lipoprotein YPDSF_2018 PF03918 Cytochrome C biogenesis protein YPDSF_2019 PF03918 Cytochrome C biogenesis protein YPDSF_2020 PF08534 Redoxin YPDSF_2021 PF01578 Cytochrome C assembly protein YPDSF_2021 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YPDSF_2022 PF03100 CcmE YPDSF_2023 PF04995 Heme exporter protein D (CcmD) YPDSF_2024 PF01578 Cytochrome C assembly protein YPDSF_2025 PF03379 CcmB protein YPDSF_2026 PF00005 ABC transporter YPDSF_2028 PF04011 LemA family YPDSF_2030 PF08274 PhnA Zinc-Ribbon YPDSF_2030 PF03831 PhnA domain YPDSF_2036 PF04717 Type VI secretion system, phage-baseplate injector YPDSF_2040 PF01695 IstB-like ATP binding protein YPDSF_2041 PF00665 Integrase core domain YPDSF_2041 PF02796 Helix-turn-helix domain of resolvase YPDSF_2049 PF13954 PapC N-terminal domain YPDSF_2049 PF13953 PapC C-terminal domain YPDSF_2049 PF00577 Outer membrane usher protein YPDSF_2050 PF00872 Transposase, Mutator family YPDSF_2051 PF13953 PapC C-terminal domain YPDSF_2051 PF13954 PapC N-terminal domain YPDSF_2051 PF00577 Outer membrane usher protein YPDSF_2052 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPDSF_2052 PF02753 Pili assembly chaperone PapD, C-terminal domain YPDSF_2053 PF16970 Type-1 fimbrial protein, A YPDSF_2054 PF07724 AAA domain (Cdc48 subfamily) YPDSF_2054 PF17871 AAA lid domain YPDSF_2054 PF00004 ATPase family associated with various cellular activities (AAA) YPDSF_2054 PF10431 C-terminal, D2-small domain, of ClpB protein YPDSF_2065 PF13406 Transglycosylase SLT domain YPDSF_2067 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2068 PF00005 ABC transporter YPDSF_2070 PF05638 Type VI secretion system effector, Hcp YPDSF_2072 PF00384 Molybdopterin oxidoreductase YPDSF_2072 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPDSF_2072 PF01568 Molydopterin dinucleotide binding domain YPDSF_2073 PF12800 4Fe-4S binding domain YPDSF_2073 PF13247 4Fe-4S dicluster domain YPDSF_2074 PF04976 DMSO reductase anchor subunit (DmsC) YPDSF_2075 PF02613 Nitrate reductase delta subunit YPDSF_2077 PF05643 Putative bacterial lipoprotein (DUF799) YPDSF_2079 PF03783 Curli production assembly/transport component CsgG YPDSF_2081 PF01292 Prokaryotic cytochrome b561 YPDSF_2082 PF00155 Aminotransferase class I and II YPDSF_2083 PF07350 Protein of unknown function (DUF1479) YPDSF_2084 PF02685 Glucokinase YPDSF_2086 PF03466 LysR substrate binding domain YPDSF_2086 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_2087 PF00248 Aldo/keto reductase family YPDSF_2089 PF01566 Natural resistance-associated macrophage protein YPDSF_2090 PF01773 Na+ dependent nucleoside transporter N-terminus YPDSF_2090 PF07662 Na+ dependent nucleoside transporter C-terminus YPDSF_2090 PF07670 Nucleoside recognition YPDSF_2091 PF07662 Na+ dependent nucleoside transporter C-terminus YPDSF_2091 PF01773 Na+ dependent nucleoside transporter N-terminus YPDSF_2091 PF07670 Nucleoside recognition YPDSF_2092 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPDSF_2093 PF01797 Transposase IS200 like YPDSF_2096 PF12843 Putative quorum-sensing-regulated virulence factor YPDSF_2097 PF12826 Helix-hairpin-helix motif YPDSF_2097 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YPDSF_2097 PF03120 NAD-dependent DNA ligase OB-fold domain YPDSF_2097 PF01653 NAD-dependent DNA ligase adenylation domain YPDSF_2097 PF00533 BRCA1 C Terminus (BRCT) domain YPDSF_2098 PF04354 ZipA, C-terminal FtsZ-binding domain YPDSF_2100 PF00291 Pyridoxal-phosphate dependent enzyme YPDSF_2101 PF00381 PTS HPr component phosphorylation site YPDSF_2102 PF00391 PEP-utilising enzyme, mobile domain YPDSF_2102 PF05524 PEP-utilising enzyme, N-terminal YPDSF_2102 PF02896 PEP-utilising enzyme, TIM barrel domain YPDSF_2103 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPDSF_2105 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_2105 PF16527 Two-component sensor protein CpxA, periplasmic domain YPDSF_2105 PF00672 HAMP domain YPDSF_2105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_2106 PF00072 Response regulator receiver domain YPDSF_2106 PF00486 Transcriptional regulatory protein, C terminal YPDSF_2107 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPDSF_2108 PF12704 MacB-like periplasmic core domain YPDSF_2108 PF02687 FtsX-like permease family YPDSF_2108 PF00005 ABC transporter YPDSF_2109 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPDSF_2109 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPDSF_2110 PF00474 Sodium:solute symporter family YPDSF_2111 PF05195 Aminopeptidase P, N-terminal domain YPDSF_2111 PF00557 Metallopeptidase family M24 YPDSF_2113 PF00155 Aminotransferase class I and II YPDSF_2115 PF00672 HAMP domain YPDSF_2115 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_2115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_2116 PF00486 Transcriptional regulatory protein, C terminal YPDSF_2116 PF00072 Response regulator receiver domain YPDSF_2118 PF00291 Pyridoxal-phosphate dependent enzyme YPDSF_2119 PF00005 ABC transporter YPDSF_2120 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2121 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2123 PF07690 Major Facilitator Superfamily YPDSF_2124 PF01380 SIS domain YPDSF_2124 PF01418 Helix-turn-helix domain, rpiR family YPDSF_2125 PF04074 YhcH/YjgK/YiaL YPDSF_2126 PF00480 ROK family YPDSF_2127 PF12468 Type III secretion system leucine rich repeat protein YPDSF_2128 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YPDSF_2129 PF00701 Dihydrodipicolinate synthetase family YPDSF_2130 PF04261 Dyp-type peroxidase family YPDSF_2133 PF04076 Bacterial OB fold (BOF) protein YPDSF_2134 PF13018 Extended Signal Peptide of Type V secretion system YPDSF_2134 PF03797 Autotransporter beta-domain YPDSF_2134 PF03212 Pertactin YPDSF_2134 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPDSF_2136 PF00583 Acetyltransferase (GNAT) family YPDSF_2137 PF01218 Coproporphyrinogen III oxidase YPDSF_2138 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YPDSF_2139 PF00390 Malic enzyme, N-terminal domain YPDSF_2139 PF03949 Malic enzyme, NAD binding domain YPDSF_2139 PF01515 Phosphate acetyl/butaryl transferase YPDSF_2140 PF00293 NUDIX domain YPDSF_2141 PF03264 NapC/NirT cytochrome c family, N-terminal region YPDSF_2142 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YPDSF_2143 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPDSF_2143 PF00384 Molybdopterin oxidoreductase YPDSF_2143 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPDSF_2143 PF01568 Molydopterin dinucleotide binding domain YPDSF_2144 PF03927 NapD protein YPDSF_2145 PF00037 4Fe-4S binding domain YPDSF_2145 PF12800 4Fe-4S binding domain YPDSF_2145 PF13187 4Fe-4S dicluster domain YPDSF_2146 PF00196 Bacterial regulatory proteins, luxR family YPDSF_2146 PF00072 Response regulator receiver domain YPDSF_2148 PF00873 AcrB/AcrD/AcrF family YPDSF_2150 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPDSF_2151 PF04055 Radical SAM superfamily YPDSF_2151 PF13186 Iron-sulfur cluster-binding domain YPDSF_2152 PF00884 Sulfatase YPDSF_2153 PF08402 TOBE domain YPDSF_2153 PF00005 ABC transporter YPDSF_2154 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2157 PF03960 ArsC family YPDSF_2158 PF07687 Peptidase dimerisation domain YPDSF_2158 PF01546 Peptidase family M20/M25/M40 YPDSF_2159 PF02557 D-alanyl-D-alanine carboxypeptidase YPDSF_2160 PF13980 Uncharacterised protein family (UPF0370) YPDSF_2161 PF17176 tRNA-binding domain YPDSF_2161 PF08351 Domain of unknown function (DUF1726) YPDSF_2161 PF13718 GNAT acetyltransferase 2 YPDSF_2161 PF05127 Helicase YPDSF_2162 PF04284 Protein of unknown function (DUF441) YPDSF_2163 PF04228 Putative neutral zinc metallopeptidase YPDSF_2164 PF01259 SAICAR synthetase YPDSF_2165 PF01797 Transposase IS200 like YPDSF_2166 PF06804 NlpB/DapX lipoprotein YPDSF_2167 PF00701 Dihydrodipicolinate synthetase family YPDSF_2168 PF01842 ACT domain YPDSF_2169 PF00578 AhpC/TSA family YPDSF_2172 PF01594 AI-2E family transporter YPDSF_2173 PF07720 Tetratricopeptide repeat YPDSF_2173 PF01435 Peptidase family M48 YPDSF_2174 PF03960 ArsC family YPDSF_2175 PF00308 Bacterial dnaA protein YPDSF_2176 PF01797 Transposase IS200 like YPDSF_2178 PF02769 AIR synthase related protein, C-terminal domain YPDSF_2178 PF00586 AIR synthase related protein, N-terminal domain YPDSF_2179 PF00551 Formyl transferase YPDSF_2180 PF13302 Acetyltransferase (GNAT) domain YPDSF_2183 PF00005 ABC transporter YPDSF_2184 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2185 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2186 PF13089 Polyphosphate kinase N-terminal domain YPDSF_2186 PF13090 Polyphosphate kinase C-terminal domain 2 YPDSF_2186 PF17941 Polyphosphate kinase C-terminal domain 1 YPDSF_2186 PF02503 Polyphosphate kinase middle domain YPDSF_2187 PF02541 Ppx/GppA phosphatase family YPDSF_2189 PF01769 Divalent cation transporter YPDSF_2189 PF03448 MgtE intracellular N domain YPDSF_2189 PF00571 CBS domain YPDSF_2190 PF00012 Hsp70 protein YPDSF_2191 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2192 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2194 PF00202 Aminotransferase class-III YPDSF_2195 PF00392 Bacterial regulatory proteins, gntR family YPDSF_2195 PF00155 Aminotransferase class I and II YPDSF_2196 PF08402 TOBE domain YPDSF_2196 PF00005 ABC transporter YPDSF_2197 PF13533 Biotin-lipoyl like YPDSF_2198 PF00873 AcrB/AcrD/AcrF family YPDSF_2201 PF07690 Major Facilitator Superfamily YPDSF_2202 PF00672 HAMP domain YPDSF_2202 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_2202 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_2203 PF00486 Transcriptional regulatory protein, C terminal YPDSF_2203 PF00072 Response regulator receiver domain YPDSF_2204 PF07411 Domain of unknown function (DUF1508) YPDSF_2206 PF00781 Diacylglycerol kinase catalytic domain YPDSF_2209 PF08543 Phosphomethylpyrimidine kinase YPDSF_2212 PF00872 Transposase, Mutator family YPDSF_2214 PF01797 Transposase IS200 like YPDSF_2215 PF00958 GMP synthase C terminal domain YPDSF_2215 PF02540 NAD synthase YPDSF_2215 PF00117 Glutamine amidotransferase class-I YPDSF_2216 PF00571 CBS domain YPDSF_2216 PF00478 IMP dehydrogenase / GMP reductase domain YPDSF_2217 PF02601 Exonuclease VII, large subunit YPDSF_2217 PF13742 OB-fold nucleic acid binding domain YPDSF_2218 PF07191 zinc-ribbons YPDSF_2220 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YPDSF_2220 PF01926 50S ribosome-binding GTPase YPDSF_2221 PF13360 PQQ-like domain YPDSF_2222 PF09976 Tetratricopeptide repeat-like domain YPDSF_2223 PF03129 Anticodon binding domain YPDSF_2223 PF13393 Histidyl-tRNA synthetase YPDSF_2224 PF04551 GcpE protein YPDSF_2225 PF13464 Domain of unknown function (DUF4115) YPDSF_2227 PF04055 Radical SAM superfamily YPDSF_2228 PF00334 Nucleoside diphosphate kinase YPDSF_2230 PF03212 Pertactin YPDSF_2230 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPDSF_2230 PF03797 Autotransporter beta-domain YPDSF_2231 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPDSF_2231 PF03212 Pertactin YPDSF_2231 PF03797 Autotransporter beta-domain YPDSF_2233 PF07179 SseB protein N-terminal domain YPDSF_2233 PF14581 SseB protein C-terminal domain YPDSF_2234 PF12404 Peptidase YPDSF_2234 PF00883 Cytosol aminopeptidase family, catalytic domain YPDSF_2235 PF04384 Iron-sulphur cluster assembly YPDSF_2236 PF00111 2Fe-2S iron-sulfur cluster binding domain YPDSF_2237 PF00012 Hsp70 protein YPDSF_2238 PF07743 HSCB C-terminal oligomerisation domain YPDSF_2238 PF00226 DnaJ domain YPDSF_2239 PF01521 Iron-sulphur cluster biosynthesis YPDSF_2240 PF01592 NifU-like N terminal domain YPDSF_2241 PF00266 Aminotransferase class-V YPDSF_2242 PF02082 Transcriptional regulator YPDSF_2243 PF00588 SpoU rRNA Methylase family YPDSF_2244 PF00459 Inositol monophosphatase family YPDSF_2245 PF03824 High-affinity nickel-transport protein YPDSF_2246 PF06226 Protein of unknown function (DUF1007) YPDSF_2247 PF00874 PRD domain YPDSF_2248 PF12832 MFS_1 like family YPDSF_2249 PF13505 Outer membrane protein beta-barrel domain YPDSF_2251 PF00464 Serine hydroxymethyltransferase YPDSF_2252 PF00175 Oxidoreductase NAD-binding domain YPDSF_2252 PF00042 Globin YPDSF_2252 PF00970 Oxidoreductase FAD-binding domain YPDSF_2253 PF00665 Integrase core domain YPDSF_2253 PF02796 Helix-turn-helix domain of resolvase YPDSF_2254 PF01695 IstB-like ATP binding protein YPDSF_2255 PF14503 YhfZ C-terminal domain YPDSF_2255 PF14502 Helix-turn-helix domain YPDSF_2256 PF00543 Nitrogen regulatory protein P-II YPDSF_2257 PF02540 NAD synthase YPDSF_2257 PF00795 Carbon-nitrogen hydrolase YPDSF_2258 PF00072 Response regulator receiver domain YPDSF_2258 PF00158 Sigma-54 interaction domain YPDSF_2259 PF13942 YfhG lipoprotein YPDSF_2260 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_2260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_2264 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YPDSF_2264 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YPDSF_2264 PF02769 AIR synthase related protein, C-terminal domain YPDSF_2265 PF01464 Transglycosylase SLT domain YPDSF_2265 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPDSF_2266 PF14437 MafB19-like deaminase YPDSF_2268 PF01380 SIS domain YPDSF_2269 PF01418 Helix-turn-helix domain, rpiR family YPDSF_2269 PF01380 SIS domain YPDSF_2270 PF12838 4Fe-4S dicluster domain YPDSF_2271 PF01797 Transposase IS200 like YPDSF_2272 PF04957 Ribosome modulation factor YPDSF_2273 PF03886 ABC-type transport auxiliary lipoprotein component YPDSF_2274 PF02470 MlaD protein YPDSF_2275 PF04403 Paraquat-inducible protein A YPDSF_2276 PF16326 ABC transporter C-terminal domain YPDSF_2276 PF00005 ABC transporter YPDSF_2276 PF12848 ABC transporter YPDSF_2277 PF10672 S-adenosylmethionine-dependent methyltransferase YPDSF_2277 PF01170 Putative RNA methylase family UPF0020 YPDSF_2277 PF02926 THUMP domain YPDSF_2278 PF00111 2Fe-2S iron-sulfur cluster binding domain YPDSF_2278 PF03476 MOSC N-terminal beta barrel domain YPDSF_2278 PF03473 MOSC domain YPDSF_2279 PF07126 Cell-division protein ZapC YPDSF_2280 PF01180 Dihydroorotate dehydrogenase YPDSF_2281 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YPDSF_2281 PF01433 Peptidase family M1 domain YPDSF_2281 PF11940 Domain of unknown function (DUF3458) Ig-like fold YPDSF_2282 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YPDSF_2282 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YPDSF_2283 PF01336 OB-fold nucleic acid binding domain YPDSF_2283 PF00152 tRNA synthetases class II (D, K and N) YPDSF_2284 PF00267 Gram-negative porin YPDSF_2285 PF00155 Aminotransferase class I and II YPDSF_2286 PF00753 Metallo-beta-lactamase superfamily YPDSF_2287 PF05951 Bacterial protein of unknown function (DUF882) YPDSF_2288 PF03734 L,D-transpeptidase catalytic domain YPDSF_2288 PF01471 Putative peptidoglycan binding domain YPDSF_2290 PF16330 MukB hinge domain YPDSF_2290 PF04310 MukB N-terminal YPDSF_2291 PF04288 MukE-like family YPDSF_2292 PF03882 MukF winged-helix domain YPDSF_2292 PF17192 MukF middle domain YPDSF_2292 PF17193 MukF C-terminal domain YPDSF_2294 PF01636 Phosphotransferase enzyme family YPDSF_2295 PF02348 Cytidylyltransferase YPDSF_2296 PF03966 Trm112p-like protein YPDSF_2297 PF00313 'Cold-shock' DNA-binding domain YPDSF_2298 PF07063 Domain of unknown function (DUF1338) YPDSF_2299 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YPDSF_2300 PF00005 ABC transporter YPDSF_2300 PF00664 ABC transporter transmembrane region YPDSF_2301 PF00753 Metallo-beta-lactamase superfamily YPDSF_2301 PF03772 Competence protein YPDSF_2302 PF00216 Bacterial DNA-binding protein YPDSF_2303 PF00575 S1 RNA binding domain YPDSF_2304 PF02224 Cytidylate kinase YPDSF_2305 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPDSF_2306 PF00266 Aminotransferase class-V YPDSF_2308 PF13018 Extended Signal Peptide of Type V secretion system YPDSF_2308 PF05662 Coiled stalk of trimeric autotransporter adhesin YPDSF_2308 PF03895 YadA-like membrane anchor domain YPDSF_2308 PF05662 Coiled stalk of trimeric autotransporter adhesin YPDSF_2308 PF13018 Extended Signal Peptide of Type V secretion system YPDSF_2308 PF05658 Head domain of trimeric autotransporter adhesin YPDSF_2308 PF05658 Head domain of trimeric autotransporter adhesin YPDSF_2308 PF03895 YadA-like membrane anchor domain YPDSF_2309 PF00710 Asparaginase, N-terminal YPDSF_2309 PF17763 Glutaminase/Asparaginase C-terminal domain YPDSF_2310 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YPDSF_2310 PF18381 YcaO cyclodehydratase C-terminal domain YPDSF_2311 PF01226 Formate/nitrite transporter YPDSF_2312 PF02901 Pyruvate formate lyase-like YPDSF_2312 PF01228 Glycine radical YPDSF_2314 PF04055 Radical SAM superfamily YPDSF_2315 PF07690 Major Facilitator Superfamily YPDSF_2316 PF02403 Seryl-tRNA synthetase N-terminal domain YPDSF_2316 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPDSF_2317 PF00004 ATPase family associated with various cellular activities (AAA) YPDSF_2317 PF12002 MgsA AAA+ ATPase C terminal YPDSF_2317 PF16193 AAA C-terminal domain YPDSF_2318 PF03548 Outer membrane lipoprotein carrier protein LolA YPDSF_2319 PF09397 Ftsk gamma domain YPDSF_2319 PF17854 FtsK alpha domain YPDSF_2319 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YPDSF_2319 PF01580 FtsK/SpoIIIE family YPDSF_2320 PF01037 Lrp/AsnC ligand binding domain YPDSF_2321 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPDSF_2322 PF00664 ABC transporter transmembrane region YPDSF_2322 PF00005 ABC transporter YPDSF_2323 PF00664 ABC transporter transmembrane region YPDSF_2323 PF00005 ABC transporter YPDSF_2324 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YPDSF_2325 PF01176 Translation initiation factor 1A / IF-1 YPDSF_2327 PF17871 AAA lid domain YPDSF_2327 PF02861 Clp amino terminal domain, pathogenicity island component YPDSF_2327 PF10431 C-terminal, D2-small domain, of ClpB protein YPDSF_2327 PF00004 ATPase family associated with various cellular activities (AAA) YPDSF_2327 PF07724 AAA domain (Cdc48 subfamily) YPDSF_2328 PF02617 ATP-dependent Clp protease adaptor protein ClpS YPDSF_2330 PF00313 'Cold-shock' DNA-binding domain YPDSF_2331 PF12704 MacB-like periplasmic core domain YPDSF_2331 PF00005 ABC transporter YPDSF_2331 PF02687 FtsX-like permease family YPDSF_2332 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPDSF_2334 PF04393 Protein of unknown function (DUF535) YPDSF_2335 PF11398 Protein of unknown function (DUF2813) YPDSF_2336 PF03956 Lysine exporter LysO YPDSF_2337 PF03063 Prismane/CO dehydrogenase family YPDSF_2338 PF00970 Oxidoreductase FAD-binding domain YPDSF_2338 PF00111 2Fe-2S iron-sulfur cluster binding domain YPDSF_2338 PF00175 Oxidoreductase NAD-binding domain YPDSF_2339 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPDSF_2339 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPDSF_2339 PF00205 Thiamine pyrophosphate enzyme, central domain YPDSF_2340 PF01212 Beta-eliminating lyase YPDSF_2341 PF11066 Protein of unknown function (DUF2867) YPDSF_2341 PF13460 NAD(P)H-binding YPDSF_2342 PF01370 NAD dependent epimerase/dehydratase family YPDSF_2343 PF12883 Protein of unknown function (DUF3828) YPDSF_2345 PF01817 Chorismate mutase type II YPDSF_2346 PF00005 ABC transporter YPDSF_2347 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPDSF_2348 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2349 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2351 PF00892 EamA-like transporter family YPDSF_2352 PF10100 Staphylopine dehydrogenase YPDSF_2353 PF03059 Nicotianamine synthase protein YPDSF_2354 PF00005 ABC transporter YPDSF_2355 PF01032 FecCD transport family YPDSF_2359 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPDSF_2360 PF05958 tRNA (Uracil-5-)-methyltransferase YPDSF_2361 PF10767 Protein of unknown function (DUF2593) YPDSF_2362 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2363 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2364 PF08402 TOBE domain YPDSF_2364 PF00005 ABC transporter YPDSF_2366 PF13416 Bacterial extracellular solute-binding protein YPDSF_2367 PF10722 Putative bacterial sensory transduction regulator YPDSF_2368 PF07214 Protein of unknown function (DUF1418) YPDSF_2369 PF00462 Glutaredoxin YPDSF_2370 PF06826 Predicted Permease Membrane Region YPDSF_2370 PF02080 TrkA-C domain YPDSF_2372 PF01569 PAP2 superfamily YPDSF_2373 PF01791 DeoC/LacD family aldolase YPDSF_2374 PF00455 DeoR C terminal sensor domain YPDSF_2374 PF08220 DeoR-like helix-turn-helix domain YPDSF_2376 PF07943 Penicillin-binding protein 5, C-terminal domain YPDSF_2376 PF00768 D-alanyl-D-alanine carboxypeptidase YPDSF_2377 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2378 PF09383 NIL domain YPDSF_2378 PF00005 ABC transporter YPDSF_2379 PF03180 NLPA lipoprotein YPDSF_2382 PF00043 Glutathione S-transferase, C-terminal domain YPDSF_2382 PF13417 Glutathione S-transferase, N-terminal domain YPDSF_2383 PF07715 TonB-dependent Receptor Plug Domain YPDSF_2383 PF00593 TonB dependent receptor YPDSF_2384 PF00005 ABC transporter YPDSF_2385 PF01032 FecCD transport family YPDSF_2388 PF00324 Amino acid permease YPDSF_2389 PF03466 LysR substrate binding domain YPDSF_2389 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_2390 PF03601 Conserved hypothetical protein 698 YPDSF_2391 PF01261 Xylose isomerase-like TIM barrel YPDSF_2392 PF13953 PapC C-terminal domain YPDSF_2392 PF00577 Outer membrane usher protein YPDSF_2392 PF13954 PapC N-terminal domain YPDSF_2393 PF02753 Pili assembly chaperone PapD, C-terminal domain YPDSF_2393 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPDSF_2395 PF17550 Family of unknown function YPDSF_2396 PF00486 Transcriptional regulatory protein, C terminal YPDSF_2397 PF02378 Phosphotransferase system, EIIC YPDSF_2397 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPDSF_2398 PF00294 pfkB family carbohydrate kinase YPDSF_2399 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPDSF_2399 PF00381 PTS HPr component phosphorylation site YPDSF_2400 PF00293 NUDIX domain YPDSF_2401 PF02653 Branched-chain amino acid transport system / permease component YPDSF_2402 PF00005 ABC transporter YPDSF_2404 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPDSF_2405 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPDSF_2405 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPDSF_2406 PF00171 Aldehyde dehydrogenase family YPDSF_2408 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPDSF_2408 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPDSF_2408 PF01842 ACT domain YPDSF_2410 PF03692 Putative zinc- or iron-chelating domain YPDSF_2411 PF03222 Tryptophan/tyrosine permease family YPDSF_2412 PF09285 Elongation factor P, C-terminal YPDSF_2412 PF01132 Elongation factor P (EF-P) OB domain YPDSF_2412 PF08207 Elongation factor P (EF-P) KOW-like domain YPDSF_2413 PF03786 D-mannonate dehydratase (UxuA) YPDSF_2414 PF01232 Mannitol dehydrogenase Rossmann domain YPDSF_2414 PF08125 Mannitol dehydrogenase C-terminal domain YPDSF_2415 PF00392 Bacterial regulatory proteins, gntR family YPDSF_2415 PF07729 FCD domain YPDSF_2417 PF07683 Cobalamin synthesis protein cobW C-terminal domain YPDSF_2417 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPDSF_2418 PF01569 PAP2 superfamily YPDSF_2419 PF00877 NlpC/P60 family YPDSF_2420 PF00563 EAL domain YPDSF_2420 PF12792 CSS motif domain associated with EAL YPDSF_2421 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPDSF_2422 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2423 PF12911 N-terminal TM domain of oligopeptide transport permease C YPDSF_2423 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2424 PF00005 ABC transporter YPDSF_2424 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPDSF_2425 PF13989 YejG-like protein YPDSF_2427 PF07690 Major Facilitator Superfamily YPDSF_2428 PF00849 RNA pseudouridylate synthase YPDSF_2428 PF01479 S4 domain YPDSF_2429 PF00271 Helicase conserved C-terminal domain YPDSF_2429 PF04851 Type III restriction enzyme, res subunit YPDSF_2430 PF01386 Ribosomal L25p family YPDSF_2431 PF01797 Transposase IS200 like YPDSF_2432 PF04245 37-kD nucleoid-associated bacterial protein YPDSF_2433 PF07208 Protein of unknown function (DUF1414) YPDSF_2434 PF00884 Sulfatase YPDSF_2434 PF11893 Domain of unknown function (DUF3413) YPDSF_2436 PF05638 Type VI secretion system effector, Hcp YPDSF_2439 PF00232 Glycosyl hydrolase family 1 YPDSF_2440 PF01380 SIS domain YPDSF_2440 PF01418 Helix-turn-helix domain, rpiR family YPDSF_2441 PF07484 Phage Tail Collar Domain YPDSF_2444 PF04865 Baseplate J-like protein YPDSF_2453 PF04984 Phage tail sheath protein subtilisin-like domain YPDSF_2453 PF17482 Phage tail sheath C-terminal domain YPDSF_2457 PF01261 Xylose isomerase-like TIM barrel YPDSF_2458 PF08220 DeoR-like helix-turn-helix domain YPDSF_2458 PF00455 DeoR C terminal sensor domain YPDSF_2459 PF00596 Class II Aldolase and Adducin N-terminal domain YPDSF_2460 PF17042 Nucleotide-binding C-terminal domain YPDSF_2460 PF07005 Sugar-binding N-terminal domain YPDSF_2461 PF06530 Phage antitermination protein Q YPDSF_2462 PF00717 Peptidase S24-like YPDSF_2462 PF01381 Helix-turn-helix YPDSF_2464 PF06183 DinI-like family YPDSF_2465 PF01278 Omptin family YPDSF_2466 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_2466 PF00672 HAMP domain YPDSF_2466 PF02743 Cache domain YPDSF_2467 PF12706 Beta-lactamase superfamily domain YPDSF_2469 PF00144 Beta-lactamase YPDSF_2470 PF00267 Gram-negative porin YPDSF_2473 PF16359 RcsD-ABL domain YPDSF_2473 PF01627 Hpt domain YPDSF_2473 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_2474 PF16359 RcsD-ABL domain YPDSF_2474 PF01627 Hpt domain YPDSF_2474 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_2475 PF00072 Response regulator receiver domain YPDSF_2475 PF00196 Bacterial regulatory proteins, luxR family YPDSF_2476 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_2476 PF00072 Response regulator receiver domain YPDSF_2476 PF09456 RcsC Alpha-Beta-Loop (ABL) YPDSF_2476 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_2477 PF03989 DNA gyrase C-terminal domain, beta-propeller YPDSF_2477 PF00521 DNA gyrase/topoisomerase IV, subunit A YPDSF_2479 PF03477 ATP cone domain YPDSF_2479 PF00317 Ribonucleotide reductase, all-alpha domain YPDSF_2479 PF02867 Ribonucleotide reductase, barrel domain YPDSF_2480 PF00268 Ribonucleotide reductase, small chain YPDSF_2481 PF00111 2Fe-2S iron-sulfur cluster binding domain YPDSF_2482 PF03974 Ecotin YPDSF_2483 PF00994 Probable molybdopterin binding domain YPDSF_2484 PF03222 Tryptophan/tyrosine permease family YPDSF_2485 PF07437 YfaZ precursor YPDSF_2486 PF00199 Catalase YPDSF_2486 PF06628 Catalase-related immune-responsive YPDSF_2487 PF13307 Helicase C-terminal domain YPDSF_2487 PF06733 DEAD_2 YPDSF_2488 PF00267 Gram-negative porin YPDSF_2490 PF00892 EamA-like transporter family YPDSF_2492 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPDSF_2492 PF01276 Orn/Lys/Arg decarboxylase, major domain YPDSF_2492 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPDSF_2493 PF00872 Transposase, Mutator family YPDSF_2494 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPDSF_2494 PF01276 Orn/Lys/Arg decarboxylase, major domain YPDSF_2494 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPDSF_2495 PF13520 Amino acid permease YPDSF_2497 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2498 PF00005 ABC transporter YPDSF_2499 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2500 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPDSF_2501 PF00581 Rhodanese-like domain YPDSF_2504 PF00005 ABC transporter YPDSF_2505 PF00005 ABC transporter YPDSF_2506 PF02653 Branched-chain amino acid transport system / permease component YPDSF_2507 PF02653 Branched-chain amino acid transport system / permease component YPDSF_2508 PF00158 Sigma-54 interaction domain YPDSF_2508 PF13188 PAS domain YPDSF_2508 PF02954 Bacterial regulatory protein, Fis family YPDSF_2509 PF07308 Protein of unknown function (DUF1456) YPDSF_2510 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2511 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2513 PF00005 ABC transporter YPDSF_2514 PF04226 Transglycosylase associated protein YPDSF_2517 PF01844 HNH endonuclease YPDSF_2518 PF01928 CYTH domain YPDSF_2519 PF09330 D-lactate dehydrogenase, membrane binding YPDSF_2519 PF01565 FAD binding domain YPDSF_2520 PF00768 D-alanyl-D-alanine carboxypeptidase YPDSF_2522 PF01207 Dihydrouridine synthase (Dus) YPDSF_2525 PF03825 Nucleoside H+ symporter YPDSF_2526 PF01048 Phosphorylase superfamily YPDSF_2528 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_2528 PF03466 LysR substrate binding domain YPDSF_2529 PF02028 BCCT, betaine/carnitine/choline family transporter YPDSF_2530 PF13977 BetI-type transcriptional repressor, C-terminal YPDSF_2530 PF00440 Bacterial regulatory proteins, tetR family YPDSF_2531 PF00171 Aldehyde dehydrogenase family YPDSF_2532 PF05199 GMC oxidoreductase YPDSF_2532 PF00732 GMC oxidoreductase YPDSF_2533 PF01797 Transposase IS200 like YPDSF_2534 PF01027 Inhibitor of apoptosis-promoting Bax1 YPDSF_2535 PF02391 MoaE protein YPDSF_2536 PF02597 ThiS family YPDSF_2537 PF01967 MoaC family YPDSF_2538 PF04055 Radical SAM superfamily YPDSF_2538 PF06463 Molybdenum Cofactor Synthesis C YPDSF_2539 PF01933 Uncharacterised protein family UPF0052 YPDSF_2540 PF09905 DNA-binding protein VF530 YPDSF_2541 PF17757 UvrB interaction domain YPDSF_2541 PF12344 Ultra-violet resistance protein B YPDSF_2541 PF02151 UvrB/uvrC motif YPDSF_2541 PF04851 Type III restriction enzyme, res subunit YPDSF_2541 PF00271 Helicase conserved C-terminal domain YPDSF_2544 PF08241 Methyltransferase domain YPDSF_2545 PF00155 Aminotransferase class I and II YPDSF_2546 PF06968 Biotin and Thiamin Synthesis associated domain YPDSF_2546 PF04055 Radical SAM superfamily YPDSF_2547 PF00202 Aminotransferase class-III YPDSF_2548 PF10282 Lactonase, 7-bladed beta-propeller YPDSF_2550 PF00005 ABC transporter YPDSF_2550 PF03459 TOBE domain YPDSF_2551 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2553 PF10766 Multidrug efflux pump-associated protein AcrZ YPDSF_2554 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_2554 PF03459 TOBE domain YPDSF_2555 PF00005 ABC transporter YPDSF_2558 PF16363 GDP-mannose 4,6 dehydratase YPDSF_2559 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YPDSF_2559 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YPDSF_2560 PF10509 Galactokinase galactose-binding signature YPDSF_2560 PF00288 GHMP kinases N terminal domain YPDSF_2560 PF08544 GHMP kinases C terminal YPDSF_2562 PF01263 Aldose 1-epimerase YPDSF_2564 PF00300 Histidine phosphatase superfamily (branch 1) YPDSF_2567 PF01545 Cation efflux family YPDSF_2568 PF04973 Nicotinamide mononucleotide transporter YPDSF_2569 PF02445 Quinolinate synthetase A protein YPDSF_2570 PF16331 TolA binding protein trimerisation YPDSF_2570 PF13174 Tetratricopeptide repeat YPDSF_2571 PF00691 OmpA family YPDSF_2572 PF04052 TolB amino-terminal domain YPDSF_2572 PF07676 WD40-like Beta Propeller Repeat YPDSF_2573 PF06519 TolA C-terminal YPDSF_2573 PF06519 TolA C-terminal YPDSF_2574 PF02472 Biopolymer transport protein ExbD/TolR YPDSF_2575 PF01618 MotA/TolQ/ExbB proton channel family YPDSF_2576 PF03061 Thioesterase superfamily YPDSF_2577 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) YPDSF_2578 PF02322 Cytochrome bd terminal oxidase subunit II YPDSF_2579 PF01654 Cytochrome bd terminal oxidase subunit I YPDSF_2580 PF01797 Transposase IS200 like YPDSF_2581 PF00549 CoA-ligase YPDSF_2581 PF02629 CoA binding domain YPDSF_2582 PF00549 CoA-ligase YPDSF_2582 PF08442 ATP-grasp domain YPDSF_2583 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPDSF_2583 PF00364 Biotin-requiring enzyme YPDSF_2583 PF02817 e3 binding domain YPDSF_2584 PF02779 Transketolase, pyrimidine binding domain YPDSF_2584 PF16870 2-oxoglutarate dehydrogenase C-terminal YPDSF_2584 PF16078 2-oxoglutarate dehydrogenase N-terminus YPDSF_2584 PF00676 Dehydrogenase E1 component YPDSF_2585 PF13085 2Fe-2S iron-sulfur cluster binding domain YPDSF_2586 PF00890 FAD binding domain YPDSF_2586 PF02910 Fumarate reductase flavoprotein C-term YPDSF_2587 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPDSF_2588 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPDSF_2589 PF00285 Citrate synthase, C-terminal domain YPDSF_2590 PF01025 GrpE YPDSF_2591 PF01513 ATP-NAD kinase YPDSF_2592 PF02463 RecF/RecN/SMC N terminal domain YPDSF_2593 PF04355 SmpA / OmlA family YPDSF_2594 PF03658 RnfH family Ubiquitin YPDSF_2595 PF03364 Polyketide cyclase / dehydrase and lipid transport YPDSF_2596 PF01668 SmpB protein YPDSF_2598 PF13356 Arm DNA-binding domain YPDSF_2598 PF00589 Phage integrase family YPDSF_2609 PF05973 Phage derived protein Gp49-like (DUF891) YPDSF_2611 PF00665 Integrase core domain YPDSF_2611 PF02796 Helix-turn-helix domain of resolvase YPDSF_2612 PF01695 IstB-like ATP binding protein YPDSF_2614 PF01527 Transposase YPDSF_2616 PF12697 Alpha/beta hydrolase family YPDSF_2617 PF01402 Ribbon-helix-helix protein, copG family YPDSF_2619 PF00258 Flavodoxin YPDSF_2620 PF01475 Ferric uptake regulator family YPDSF_2621 PF02838 Glycosyl hydrolase family 20, domain 2 YPDSF_2621 PF03173 Putative carbohydrate binding domain YPDSF_2621 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YPDSF_2621 PF00728 Glycosyl hydrolase family 20, catalytic domain YPDSF_2622 PF02838 Glycosyl hydrolase family 20, domain 2 YPDSF_2622 PF03173 Putative carbohydrate binding domain YPDSF_2622 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YPDSF_2622 PF00728 Glycosyl hydrolase family 20, catalytic domain YPDSF_2623 PF03573 outer membrane porin, OprD family YPDSF_2624 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YPDSF_2624 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPDSF_2625 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPDSF_2625 PF00367 phosphotransferase system, EIIB YPDSF_2625 PF02378 Phosphotransferase system, EIIC YPDSF_2626 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YPDSF_2627 PF01979 Amidohydrolase family YPDSF_2628 PF00480 ROK family YPDSF_2628 PF01047 MarR family YPDSF_2629 PF13344 Haloacid dehalogenase-like hydrolase YPDSF_2630 PF13537 Glutamine amidotransferase domain YPDSF_2630 PF00733 Asparagine synthase YPDSF_2631 PF01494 FAD binding domain YPDSF_2632 PF00919 Uncharacterized protein family UPF0004 YPDSF_2632 PF04055 Radical SAM superfamily YPDSF_2632 PF01938 TRAM domain YPDSF_2633 PF02562 PhoH-like protein YPDSF_2634 PF02130 Uncharacterized protein family UPF0054 YPDSF_2636 PF03471 Transporter associated domain YPDSF_2636 PF00571 CBS domain YPDSF_2637 PF00795 Carbon-nitrogen hydrolase YPDSF_2638 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPDSF_2639 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2640 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2641 PF00005 ABC transporter YPDSF_2642 PF07295 Zinc-ribbon containing domain YPDSF_2643 PF08264 Anticodon-binding domain of tRNA YPDSF_2643 PF13603 Leucyl-tRNA synthetase, Domain 2 YPDSF_2643 PF00133 tRNA synthetases class I (I, L, M and V) YPDSF_2644 PF04390 Lipopolysaccharide-assembly YPDSF_2645 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YPDSF_2645 PF06144 DNA polymerase III, delta subunit YPDSF_2646 PF01467 Cytidylyltransferase-like YPDSF_2648 PF02590 Predicted SPOUT methyltransferase YPDSF_2649 PF03717 Penicillin-binding Protein dimerisation domain YPDSF_2649 PF00905 Penicillin binding protein transpeptidase domain YPDSF_2650 PF01098 Cell cycle protein YPDSF_2651 PF03330 Lytic transglycolase YPDSF_2651 PF05036 Sporulation related domain YPDSF_2652 PF07943 Penicillin-binding protein 5, C-terminal domain YPDSF_2652 PF00768 D-alanyl-D-alanine carboxypeptidase YPDSF_2653 PF04359 Protein of unknown function (DUF493) YPDSF_2654 PF03099 Biotin/lipoate A/B protein ligase family YPDSF_2655 PF04055 Radical SAM superfamily YPDSF_2655 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YPDSF_2656 PF02416 mttA/Hcf106 family YPDSF_2658 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPDSF_2659 PF00313 'Cold-shock' DNA-binding domain YPDSF_2660 PF00313 'Cold-shock' DNA-binding domain YPDSF_2661 PF00196 Bacterial regulatory proteins, luxR family YPDSF_2666 PF00005 ABC transporter YPDSF_2666 PF00664 ABC transporter transmembrane region YPDSF_2667 PF04962 KduI/IolB family YPDSF_2668 PF01261 Xylose isomerase-like TIM barrel YPDSF_2669 PF00294 pfkB family carbohydrate kinase YPDSF_2670 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPDSF_2670 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPDSF_2671 PF02653 Branched-chain amino acid transport system / permease component YPDSF_2672 PF00005 ABC transporter YPDSF_2673 PF13407 Periplasmic binding protein domain YPDSF_2674 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPDSF_2674 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPDSF_2675 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPDSF_2675 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPDSF_2676 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPDSF_2676 PF00205 Thiamine pyrophosphate enzyme, central domain YPDSF_2676 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPDSF_2677 PF00171 Aldehyde dehydrogenase family YPDSF_2679 PF17962 Bacterial macroglobulin domain 6 YPDSF_2679 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YPDSF_2679 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YPDSF_2679 PF00207 Alpha-2-macroglobulin family YPDSF_2679 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YPDSF_2679 PF01835 MG2 domain YPDSF_2679 PF07703 Alpha-2-macroglobulin bait region domain YPDSF_2680 PF06832 Penicillin-Binding Protein C-terminus Family YPDSF_2680 PF00912 Transglycosylase YPDSF_2680 PF00905 Penicillin binding protein transpeptidase domain YPDSF_2681 PF13693 Winged helix-turn-helix DNA-binding YPDSF_2684 PF05638 Type VI secretion system effector, Hcp YPDSF_2686 PF13018 Extended Signal Peptide of Type V secretion system YPDSF_2686 PF03212 Pertactin YPDSF_2686 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPDSF_2686 PF03797 Autotransporter beta-domain YPDSF_2689 PF00872 Transposase, Mutator family YPDSF_2695 PF00248 Aldo/keto reductase family YPDSF_2696 PF00248 Aldo/keto reductase family YPDSF_2697 PF03466 LysR substrate binding domain YPDSF_2697 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_2698 PF00665 Integrase core domain YPDSF_2698 PF02796 Helix-turn-helix domain of resolvase YPDSF_2699 PF01695 IstB-like ATP binding protein YPDSF_2701 PF00782 Dual specificity phosphatase, catalytic domain YPDSF_2702 PF12146 Serine aminopeptidase, S33 YPDSF_2702 PF12147 Putative methyltransferase YPDSF_2703 PF01553 Acyltransferase YPDSF_2705 PF01066 CDP-alcohol phosphatidyltransferase YPDSF_2708 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPDSF_2708 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPDSF_2710 PF01797 Transposase IS200 like YPDSF_2711 PF09190 DALR domain YPDSF_2711 PF01406 tRNA synthetases class I (C) catalytic domain YPDSF_2712 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPDSF_2713 PF00149 Calcineurin-like phosphoesterase YPDSF_2714 PF00731 AIR carboxylase YPDSF_2715 PF02222 ATP-grasp domain YPDSF_2715 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YPDSF_2717 PF00005 ABC transporter YPDSF_2718 PF13472 GDSL-like Lipase/Acylhydrolase family YPDSF_2719 PF00106 short chain dehydrogenase YPDSF_2720 PF00085 Thioredoxin YPDSF_2721 PF16200 C-terminal region of band_7 YPDSF_2721 PF01145 SPFH domain / Band 7 family YPDSF_2722 PF01957 NfeD-like C-terminal, partner-binding YPDSF_2723 PF13411 MerR HTH family regulatory protein YPDSF_2724 PF00403 Heavy-metal-associated domain YPDSF_2725 PF01963 TraB family YPDSF_2726 PF04073 Aminoacyl-tRNA editing domain YPDSF_2728 PF00149 Calcineurin-like phosphoesterase YPDSF_2728 PF02872 5'-nucleotidase, C-terminal domain YPDSF_2729 PF00149 Calcineurin-like phosphoesterase YPDSF_2729 PF02872 5'-nucleotidase, C-terminal domain YPDSF_2730 PF00149 Calcineurin-like phosphoesterase YPDSF_2730 PF02872 5'-nucleotidase, C-terminal domain YPDSF_2733 PF00999 Sodium/hydrogen exchanger family YPDSF_2733 PF02254 TrkA-N domain YPDSF_2734 PF00294 pfkB family carbohydrate kinase YPDSF_2735 PF02706 Chain length determinant protein YPDSF_2736 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPDSF_2736 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPDSF_2736 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPDSF_2736 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPDSF_2737 PF00535 Glycosyl transferase family 2 YPDSF_2738 PF01050 Mannose-6-phosphate isomerase YPDSF_2738 PF00483 Nucleotidyl transferase YPDSF_2739 PF01370 NAD dependent epimerase/dehydratase family YPDSF_2740 PF16363 GDP-mannose 4,6 dehydratase YPDSF_2741 PF16363 GDP-mannose 4,6 dehydratase YPDSF_2742 PF13439 Glycosyltransferase Family 4 YPDSF_2742 PF00534 Glycosyl transferases group 1 YPDSF_2748 PF01370 NAD dependent epimerase/dehydratase family YPDSF_2749 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPDSF_2750 PF16363 GDP-mannose 4,6 dehydratase YPDSF_2751 PF00483 Nucleotidyl transferase YPDSF_2752 PF00175 Oxidoreductase NAD-binding domain YPDSF_2752 PF00111 2Fe-2S iron-sulfur cluster binding domain YPDSF_2752 PF00970 Oxidoreductase FAD-binding domain YPDSF_2753 PF00762 Ferrochelatase YPDSF_2754 PF05191 Adenylate kinase, active site lid YPDSF_2755 PF00183 Hsp90 protein YPDSF_2755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_2757 PF13662 Toprim domain YPDSF_2757 PF02132 RecR protein YPDSF_2758 PF02575 YbaB/EbfC DNA-binding family YPDSF_2759 PF12170 DNA polymerase III tau subunit V interacting with alpha YPDSF_2759 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YPDSF_2759 PF12169 DNA polymerase III subunits gamma and tau domain III YPDSF_2760 PF00156 Phosphoribosyl transferase domain YPDSF_2761 PF04304 Protein of unknown function (DUF454) YPDSF_2763 PF10689 Protein of unknown function (DUF2496) YPDSF_2764 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPDSF_2764 PF00924 Mechanosensitive ion channel YPDSF_2764 PF12795 Mechanosensitive ion channel porin domain YPDSF_2765 PF02635 DsrE/DsrF-like family YPDSF_2766 PF08361 MAATS-type transcriptional repressor, C-terminal region YPDSF_2766 PF00440 Bacterial regulatory proteins, tetR family YPDSF_2767 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPDSF_2767 PF00529 HlyD membrane-fusion protein of T1SS YPDSF_2768 PF00873 AcrB/AcrD/AcrF family YPDSF_2769 PF01197 Ribosomal protein L31 YPDSF_2770 PF00444 Ribosomal protein L36 YPDSF_2772 PF10757 Biofilm formation regulator YbaJ YPDSF_2773 PF05321 Haemolysin expression modulating protein YPDSF_2774 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPDSF_2775 PF09619 Type III secretion system lipoprotein chaperone (YscW) YPDSF_2777 PF00909 Ammonium Transporter Family YPDSF_2778 PF00543 Nitrogen regulatory protein P-II YPDSF_2779 PF00664 ABC transporter transmembrane region YPDSF_2779 PF00005 ABC transporter YPDSF_2780 PF00005 ABC transporter YPDSF_2780 PF00664 ABC transporter transmembrane region YPDSF_2781 PF13404 AsnC-type helix-turn-helix domain YPDSF_2781 PF01037 Lrp/AsnC ligand binding domain YPDSF_2782 PF00291 Pyridoxal-phosphate dependent enzyme YPDSF_2784 PF12793 Sugar transport-related sRNA regulator N-term YPDSF_2784 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPDSF_2785 PF06508 Queuosine biosynthesis protein QueC YPDSF_2788 PF13145 PPIC-type PPIASE domain YPDSF_2789 PF01797 Transposase IS200 like YPDSF_2790 PF00216 Bacterial DNA-binding protein YPDSF_2791 PF00004 ATPase family associated with various cellular activities (AAA) YPDSF_2791 PF05362 Lon protease (S16) C-terminal proteolytic domain YPDSF_2791 PF02190 ATP-dependent protease La (LON) substrate-binding domain YPDSF_2792 PF10431 C-terminal, D2-small domain, of ClpB protein YPDSF_2792 PF06689 ClpX C4-type zinc finger YPDSF_2792 PF07724 AAA domain (Cdc48 subfamily) YPDSF_2793 PF00574 Clp protease YPDSF_2794 PF05697 Bacterial trigger factor protein (TF) YPDSF_2794 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPDSF_2794 PF05698 Bacterial trigger factor protein (TF) C-terminus YPDSF_2795 PF01722 BolA-like protein YPDSF_2796 PF03923 Uncharacterized lipoprotein YPDSF_2796 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPDSF_2797 PF07690 Major Facilitator Superfamily YPDSF_2798 PF03502 Nucleoside-specific channel-forming protein, Tsx YPDSF_2799 PF06481 COX Aromatic Rich Motif YPDSF_2799 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YPDSF_2800 PF00115 Cytochrome C and Quinol oxidase polypeptide I YPDSF_2801 PF00510 Cytochrome c oxidase subunit III YPDSF_2802 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YPDSF_2803 PF01040 UbiA prenyltransferase family YPDSF_2804 PF07690 Major Facilitator Superfamily YPDSF_2805 PF04461 Protein of unknown function (DUF520) YPDSF_2806 PF02558 Ketopantoate reductase PanE/ApbA YPDSF_2806 PF08546 Ketopantoate reductase PanE/ApbA C terminal YPDSF_2807 PF01965 DJ-1/PfpI family YPDSF_2808 PF02568 Thiamine biosynthesis protein (ThiI) YPDSF_2808 PF02926 THUMP domain YPDSF_2810 PF02609 Exonuclease VII small subunit YPDSF_2811 PF00348 Polyprenyl synthetase YPDSF_2812 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YPDSF_2812 PF02780 Transketolase, C-terminal domain YPDSF_2812 PF02779 Transketolase, pyrimidine binding domain YPDSF_2814 PF04608 Phosphatidylglycerophosphatase A YPDSF_2815 PF02769 AIR synthase related protein, C-terminal domain YPDSF_2815 PF00586 AIR synthase related protein, N-terminal domain YPDSF_2816 PF01029 NusB family YPDSF_2817 PF00885 6,7-dimethyl-8-ribityllumazine synthase YPDSF_2818 PF01872 RibD C-terminal domain YPDSF_2818 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPDSF_2819 PF03477 ATP cone domain YPDSF_2823 PF07549 SecD/SecF GG Motif YPDSF_2823 PF02355 Protein export membrane protein YPDSF_2824 PF07549 SecD/SecF GG Motif YPDSF_2824 PF02355 Protein export membrane protein YPDSF_2824 PF13721 SecD export protein N-terminal TM region YPDSF_2825 PF02699 Preprotein translocase subunit YPDSF_2826 PF01702 Queuine tRNA-ribosyltransferase YPDSF_2827 PF02547 Queuosine biosynthesis protein YPDSF_2828 PF04336 Acyl carrier protein phosphodiesterase YPDSF_2829 PF10417 C-terminal domain of 1-Cys peroxiredoxin YPDSF_2829 PF00578 AhpC/TSA family YPDSF_2833 PF02903 Alpha amylase, N-terminal ig-like domain YPDSF_2833 PF00128 Alpha amylase, catalytic domain YPDSF_2834 PF00324 Amino acid permease YPDSF_2835 PF05525 Branched-chain amino acid transport protein YPDSF_2836 PF12849 PBP superfamily domain YPDSF_2837 PF00989 PAS fold YPDSF_2837 PF11808 Phosphate regulon sensor protein PhoR YPDSF_2837 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_2837 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_2838 PF00486 Transcriptional regulatory protein, C terminal YPDSF_2838 PF00072 Response regulator receiver domain YPDSF_2839 PF00149 Calcineurin-like phosphoesterase YPDSF_2839 PF12320 Type 5 capsule protein repressor C-terminal domain YPDSF_2840 PF13476 AAA domain YPDSF_2841 PF00480 ROK family YPDSF_2842 PF04381 Putative exonuclease, RdgC YPDSF_2843 PF06865 Pyrimidine/purine nucleoside phosphorylase YPDSF_2844 PF01202 Shikimate kinase YPDSF_2846 PF08241 Methyltransferase domain YPDSF_2849 PF07238 PilZ domain YPDSF_2849 PF07317 Flagellar regulator YcgR YPDSF_2850 PF00171 Aldehyde dehydrogenase family YPDSF_2851 PF01472 PUA domain YPDSF_2851 PF00696 Amino acid kinase family YPDSF_2852 PF07417 Sigma factor-binding transcriptional regulator Crl YPDSF_2854 PF00156 Phosphoribosyl transferase domain YPDSF_2856 PF03466 LysR substrate binding domain YPDSF_2856 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_2857 PF07687 Peptidase dimerisation domain YPDSF_2857 PF01546 Peptidase family M20/M25/M40 YPDSF_2858 PF00817 impB/mucB/samB family YPDSF_2858 PF11798 IMS family HHH motif YPDSF_2858 PF11799 impB/mucB/samB family C-terminal domain YPDSF_2859 PF03009 Glycerophosphoryl diester phosphodiesterase family YPDSF_2861 PF02424 ApbE family YPDSF_2862 PF00111 2Fe-2S iron-sulfur cluster binding domain YPDSF_2862 PF00970 Oxidoreductase FAD-binding domain YPDSF_2862 PF00175 Oxidoreductase NAD-binding domain YPDSF_2863 PF02508 Rnf-Nqr subunit, membrane protein YPDSF_2864 PF02508 Rnf-Nqr subunit, membrane protein YPDSF_2865 PF04205 FMN-binding domain YPDSF_2866 PF03116 NQR2, RnfD, RnfE family YPDSF_2867 PF11973 NQRA C-terminal domain YPDSF_2867 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YPDSF_2869 PF03734 L,D-transpeptidase catalytic domain YPDSF_2870 PF13230 Glutamine amidotransferases class-II YPDSF_2871 PF13580 SIS domain YPDSF_2872 PF09317 Domain of unknown function (DUF1974) YPDSF_2872 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPDSF_2872 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPDSF_2875 PF18071 HMW1C N-terminal YPDSF_2875 PF18254 HMW1 domain 2 YPDSF_2876 PF05860 haemagglutination activity domain YPDSF_2877 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPDSF_2877 PF08479 POTRA domain, ShlB-type YPDSF_2878 PF01636 Phosphotransferase enzyme family YPDSF_2879 PF01008 Initiation factor 2 subunit family YPDSF_2880 PF03079 ARD/ARD' family YPDSF_2882 PF00596 Class II Aldolase and Adducin N-terminal domain YPDSF_2883 PF00155 Aminotransferase class I and II YPDSF_2884 PF00795 Carbon-nitrogen hydrolase YPDSF_2885 PF07687 Peptidase dimerisation domain YPDSF_2885 PF01546 Peptidase family M20/M25/M40 YPDSF_2886 PF00266 Aminotransferase class-V YPDSF_2887 PF02796 Helix-turn-helix domain of resolvase YPDSF_2887 PF00665 Integrase core domain YPDSF_2888 PF01695 IstB-like ATP binding protein YPDSF_2889 PF00266 Aminotransferase class-V YPDSF_2890 PF00005 ABC transporter YPDSF_2892 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_2893 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPDSF_2897 PF01425 Amidase YPDSF_2899 PF07690 Major Facilitator Superfamily YPDSF_2900 PF03591 AzlC protein YPDSF_2901 PF05437 Branched-chain amino acid transport protein (AzlD) YPDSF_2902 PF01047 MarR family YPDSF_2903 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPDSF_2903 PF00529 HlyD membrane-fusion protein of T1SS YPDSF_2904 PF07690 Major Facilitator Superfamily YPDSF_2905 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPDSF_2905 PF00588 SpoU rRNA Methylase family YPDSF_2906 PF00085 Thioredoxin YPDSF_2908 PF13607 Succinyl-CoA ligase like flavodoxin domain YPDSF_2908 PF13380 CoA binding domain YPDSF_2908 PF00583 Acetyltransferase (GNAT) family YPDSF_2909 PF13091 PLD-like domain YPDSF_2910 PF10043 Predicted periplasmic lipoprotein (DUF2279) YPDSF_2911 PF17871 AAA lid domain YPDSF_2911 PF02861 Clp amino terminal domain, pathogenicity island component YPDSF_2911 PF07724 AAA domain (Cdc48 subfamily) YPDSF_2911 PF00004 ATPase family associated with various cellular activities (AAA) YPDSF_2911 PF10431 C-terminal, D2-small domain, of ClpB protein YPDSF_2913 PF00849 RNA pseudouridylate synthase YPDSF_2913 PF01479 S4 domain YPDSF_2914 PF13525 Outer membrane lipoprotein YPDSF_2915 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPDSF_2917 PF01817 Chorismate mutase type II YPDSF_2917 PF00800 Prephenate dehydratase YPDSF_2918 PF02153 Prephenate dehydrogenase YPDSF_2918 PF01817 Chorismate mutase type II YPDSF_2919 PF00793 DAHP synthetase I family YPDSF_2920 PF01695 IstB-like ATP binding protein YPDSF_2921 PF00665 Integrase core domain YPDSF_2921 PF02796 Helix-turn-helix domain of resolvase YPDSF_2923 PF03884 DNA gyrase inhibitor YacG YPDSF_2924 PF07072 Cell division protein YPDSF_2925 PF01121 Dephospho-CoA kinase YPDSF_2926 PF00478 IMP dehydrogenase / GMP reductase domain YPDSF_2927 PF00482 Type II secretion system (T2SS), protein F YPDSF_2928 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YPDSF_2928 PF00437 Type II/IV secretion system protein YPDSF_2929 PF07963 Prokaryotic N-terminal methylation motif YPDSF_2930 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YPDSF_2930 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YPDSF_2931 PF01510 N-acetylmuramoyl-L-alanine amidase YPDSF_2932 PF17113 Regulatory signalling modulator protein AmpE YPDSF_2933 PF00324 Amino acid permease YPDSF_2934 PF00392 Bacterial regulatory proteins, gntR family YPDSF_2934 PF07729 FCD domain YPDSF_2935 PF00456 Transketolase, thiamine diphosphate binding domain YPDSF_2935 PF17831 Pyruvate dehydrogenase E1 component middle domain YPDSF_2936 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPDSF_2936 PF00364 Biotin-requiring enzyme YPDSF_2936 PF02817 e3 binding domain YPDSF_2938 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPDSF_2938 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPDSF_2939 PF01797 Transposase IS200 like YPDSF_2940 PF00330 Aconitase family (aconitate hydratase) YPDSF_2940 PF11791 Aconitate B N-terminal domain YPDSF_2940 PF06434 Aconitate hydratase 2 N-terminus YPDSF_2941 PF06062 Uncharacterised protein family (UPF0231) YPDSF_2942 PF00892 EamA-like transporter family YPDSF_2943 PF02675 S-adenosylmethionine decarboxylase YPDSF_2944 PF17284 Spermidine synthase tetramerisation domain YPDSF_2945 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YPDSF_2946 PF00394 Multicopper oxidase YPDSF_2946 PF07732 Multicopper oxidase YPDSF_2946 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPDSF_2946 PF07731 Multicopper oxidase YPDSF_2947 PF00156 Phosphoribosyl transferase domain YPDSF_2948 PF00484 Carbonic anhydrase YPDSF_2949 PF00005 ABC transporter YPDSF_2950 PF01061 ABC-2 type transporter YPDSF_2952 PF01522 Polysaccharide deacetylase YPDSF_2953 PF02261 Aspartate decarboxylase YPDSF_2954 PF02569 Pantoate-beta-alanine ligase YPDSF_2955 PF02548 Ketopantoate hydroxymethyltransferase YPDSF_2956 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YPDSF_2957 PF12627 Probable RNA and SrmB- binding site of polymerase A YPDSF_2957 PF12626 Polymerase A arginine-rich C-terminus YPDSF_2957 PF01743 Poly A polymerase head domain YPDSF_2958 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPDSF_2959 PF01258 Prokaryotic dksA/traR C4-type zinc finger YPDSF_2960 PF17746 SfsA N-terminal OB domain YPDSF_2960 PF03749 Sugar fermentation stimulation protein RE domain YPDSF_2961 PF02834 LigT like Phosphoesterase YPDSF_2962 PF00271 Helicase conserved C-terminal domain YPDSF_2962 PF04408 Helicase associated domain (HA2) YPDSF_2962 PF00270 DEAD/DEAH box helicase YPDSF_2962 PF08482 ATP-dependent helicase C-terminal YPDSF_2963 PF00912 Transglycosylase YPDSF_2963 PF00905 Penicillin binding protein transpeptidase domain YPDSF_2963 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YPDSF_2963 PF14814 Bifunctional transglycosylase second domain YPDSF_2966 PF01497 Periplasmic binding protein YPDSF_2967 PF01032 FecCD transport family YPDSF_2968 PF00202 Aminotransferase class-III YPDSF_2969 PF00654 Voltage gated chloride channel YPDSF_2970 PF01521 Iron-sulphur cluster biosynthesis YPDSF_2972 PF03458 UPF0126 domain YPDSF_2973 PF01497 Periplasmic binding protein YPDSF_2974 PF01048 Phosphorylase superfamily YPDSF_2975 PF13286 Phosphohydrolase-associated domain YPDSF_2975 PF01966 HD domain YPDSF_2976 PF00595 PDZ domain YPDSF_2977 PF01627 Hpt domain YPDSF_2977 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPDSF_2977 PF00072 Response regulator receiver domain YPDSF_2977 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_2977 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_2977 PF00672 HAMP domain YPDSF_2979 PF05958 tRNA (Uracil-5-)-methyltransferase YPDSF_2979 PF01938 TRAM domain YPDSF_2980 PF04607 Region found in RelA / SpoT proteins YPDSF_2980 PF13291 ACT domain YPDSF_2980 PF02824 TGS domain YPDSF_2981 PF03819 MazG nucleotide pyrophosphohydrolase domain YPDSF_2982 PF06418 CTP synthase N-terminus YPDSF_2982 PF00117 Glutamine amidotransferase class-I YPDSF_2983 PF03952 Enolase, N-terminal domain YPDSF_2983 PF00113 Enolase, C-terminal TIM barrel domain YPDSF_2984 PF00080 Copper/zinc superoxide dismutase (SODC) YPDSF_2985 PF04055 Radical SAM superfamily YPDSF_2986 PF01242 6-pyruvoyl tetrahydropterin synthase YPDSF_2987 PF00258 Flavodoxin YPDSF_2987 PF00175 Oxidoreductase NAD-binding domain YPDSF_2987 PF00667 FAD binding domain YPDSF_2988 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPDSF_2988 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPDSF_2989 PF01507 Phosphoadenosine phosphosulfate reductase family YPDSF_2990 PF01507 Phosphoadenosine phosphosulfate reductase family YPDSF_2993 PF14824 Sirohaem biosynthesis protein central YPDSF_2993 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPDSF_2993 PF10414 Sirohaem synthase dimerisation region YPDSF_2994 PF01507 Phosphoadenosine phosphosulfate reductase family YPDSF_2995 PF00009 Elongation factor Tu GTP binding domain YPDSF_2997 PF12084 Protein of unknown function (DUF3561) YPDSF_2998 PF04977 Septum formation initiator YPDSF_2999 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPDSF_3000 PF02542 YgbB family YPDSF_3001 PF01142 tRNA pseudouridine synthase D (TruD) YPDSF_3002 PF01975 Survival protein SurE YPDSF_3004 PF01551 Peptidase family M23 YPDSF_3004 PF01476 LysM domain YPDSF_3005 PF04542 Sigma-70 region 2 YPDSF_3005 PF04539 Sigma-70 region 3 YPDSF_3005 PF04545 Sigma-70, region 4 YPDSF_3005 PF00140 Sigma-70 factor, region 1.2 YPDSF_3006 PF00488 MutS domain V YPDSF_3006 PF05190 MutS family domain IV YPDSF_3006 PF01624 MutS domain I YPDSF_3006 PF05188 MutS domain II YPDSF_3006 PF05192 MutS domain III YPDSF_3008 PF02502 Ribose/Galactose Isomerase YPDSF_3009 PF00107 Zinc-binding dehydrogenase YPDSF_3009 PF08240 Alcohol dehydrogenase GroES-like domain YPDSF_3011 PF02733 Dak1 domain YPDSF_3012 PF02734 DAK2 domain YPDSF_3013 PF04198 Putative sugar-binding domain YPDSF_3013 PF13936 Helix-turn-helix domain YPDSF_3014 PF02040 Arsenical pump membrane protein YPDSF_3015 PF01022 Bacterial regulatory protein, arsR family YPDSF_3017 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPDSF_3018 PF03150 Di-haem cytochrome c peroxidase YPDSF_3018 PF00034 Cytochrome c YPDSF_3018 PF14376 Haem-binding domain YPDSF_3020 PF07715 TonB-dependent Receptor Plug Domain YPDSF_3020 PF00593 TonB dependent receptor YPDSF_3026 PF05683 Fumarase C-terminus YPDSF_3026 PF05681 Fumarate hydratase (Fumerase) YPDSF_3027 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPDSF_3027 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPDSF_3028 PF01261 Xylose isomerase-like TIM barrel YPDSF_3029 PF02653 Branched-chain amino acid transport system / permease component YPDSF_3030 PF02653 Branched-chain amino acid transport system / permease component YPDSF_3031 PF00005 ABC transporter YPDSF_3033 PF08220 DeoR-like helix-turn-helix domain YPDSF_3033 PF00455 DeoR C terminal sensor domain YPDSF_3034 PF00596 Class II Aldolase and Adducin N-terminal domain YPDSF_3035 PF01568 Molydopterin dinucleotide binding domain YPDSF_3035 PF00384 Molybdopterin oxidoreductase YPDSF_3035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPDSF_3036 PF12800 4Fe-4S binding domain YPDSF_3036 PF13247 4Fe-4S dicluster domain YPDSF_3037 PF04976 DMSO reductase anchor subunit (DmsC) YPDSF_3038 PF02613 Nitrate reductase delta subunit YPDSF_3039 PF01292 Prokaryotic cytochrome b561 YPDSF_3040 PF07361 Cytochrome b562 YPDSF_3041 PF00141 Peroxidase YPDSF_3044 PF00005 ABC transporter YPDSF_3045 PF02653 Branched-chain amino acid transport system / permease component YPDSF_3046 PF00456 Transketolase, thiamine diphosphate binding domain YPDSF_3047 PF02779 Transketolase, pyrimidine binding domain YPDSF_3047 PF02780 Transketolase, C-terminal domain YPDSF_3048 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPDSF_3048 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPDSF_3052 PF07690 Major Facilitator Superfamily YPDSF_3053 PF02464 Competence-damaged protein YPDSF_3054 PF00154 recA bacterial DNA recombination protein YPDSF_3055 PF02631 RecX family YPDSF_3056 PF01411 tRNA synthetases class II (A) YPDSF_3056 PF02272 DHHA1 domain YPDSF_3056 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPDSF_3057 PF02599 Global regulator protein family YPDSF_3058 PF13419 Haloacid dehalogenase-like hydrolase YPDSF_3059 PF09335 SNARE associated Golgi protein YPDSF_3060 PF04262 Glutamate-cysteine ligase YPDSF_3061 PF02664 S-Ribosylhomocysteinase (LuxS) YPDSF_3062 PF00571 CBS domain YPDSF_3062 PF03471 Transporter associated domain YPDSF_3062 PF01595 Cyclin M transmembrane N-terminal domain YPDSF_3063 PF01578 Cytochrome C assembly protein YPDSF_3064 PF00448 SRP54-type protein, GTPase domain YPDSF_3064 PF02978 Signal peptide binding domain YPDSF_3064 PF02881 SRP54-type protein, helical bundle domain YPDSF_3066 PF00886 Ribosomal protein S16 YPDSF_3067 PF05239 PRC-barrel domain YPDSF_3067 PF01782 RimM N-terminal domain YPDSF_3068 PF01746 tRNA (Guanine-1)-methyltransferase YPDSF_3069 PF01245 Ribosomal protein L19 YPDSF_3070 PF04338 Protein of unknown function, DUF481 YPDSF_3071 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPDSF_3072 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPDSF_3073 PF00072 Response regulator receiver domain YPDSF_3073 PF04397 LytTr DNA-binding domain YPDSF_3074 PF00793 DAHP synthetase I family YPDSF_3075 PF02796 Helix-turn-helix domain of resolvase YPDSF_3075 PF00665 Integrase core domain YPDSF_3076 PF01695 IstB-like ATP binding protein YPDSF_3077 PF00293 NUDIX domain YPDSF_3078 PF07516 SecA Wing and Scaffold domain YPDSF_3078 PF01043 SecA preprotein cross-linking domain YPDSF_3078 PF07517 SecA DEAD-like domain YPDSF_3078 PF02810 SEC-C motif YPDSF_3079 PF06558 Secretion monitor precursor protein (SecM) YPDSF_3081 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YPDSF_3082 PF00091 Tubulin/FtsZ family, GTPase domain YPDSF_3082 PF12327 FtsZ family, C-terminal domain YPDSF_3083 PF02491 SHS2 domain inserted in FTSA YPDSF_3084 PF08478 POTRA domain, FtsQ-type YPDSF_3084 PF03799 Cell division protein FtsQ YPDSF_3085 PF01820 D-ala D-ala ligase N-terminus YPDSF_3085 PF07478 D-ala D-ala ligase C-terminus YPDSF_3086 PF01225 Mur ligase family, catalytic domain YPDSF_3086 PF02875 Mur ligase family, glutamate ligase domain YPDSF_3086 PF08245 Mur ligase middle domain YPDSF_3087 PF03033 Glycosyltransferase family 28 N-terminal domain YPDSF_3087 PF04101 Glycosyltransferase family 28 C-terminal domain YPDSF_3088 PF01098 Cell cycle protein YPDSF_3089 PF02875 Mur ligase family, glutamate ligase domain YPDSF_3089 PF08245 Mur ligase middle domain YPDSF_3090 PF00953 Glycosyl transferase family 4 YPDSF_3090 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YPDSF_3091 PF08245 Mur ligase middle domain YPDSF_3091 PF01225 Mur ligase family, catalytic domain YPDSF_3091 PF02875 Mur ligase family, glutamate ligase domain YPDSF_3092 PF01225 Mur ligase family, catalytic domain YPDSF_3092 PF02875 Mur ligase family, glutamate ligase domain YPDSF_3092 PF08245 Mur ligase middle domain YPDSF_3093 PF03717 Penicillin-binding Protein dimerisation domain YPDSF_3093 PF00905 Penicillin binding protein transpeptidase domain YPDSF_3094 PF04999 Cell division protein FtsL YPDSF_3095 PF01795 MraW methylase family YPDSF_3096 PF02381 MraZ protein, putative antitoxin-like YPDSF_3097 PF06610 L-alanine exporter YPDSF_3099 PF00356 Bacterial regulatory proteins, lacI family YPDSF_3099 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPDSF_3100 PF01797 Transposase IS200 like YPDSF_3101 PF10369 Small subunit of acetolactate synthase YPDSF_3102 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPDSF_3102 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPDSF_3102 PF00205 Thiamine pyrophosphate enzyme, central domain YPDSF_3103 PF00872 Transposase, Mutator family YPDSF_3104 PF00501 AMP-binding enzyme YPDSF_3105 PF03466 LysR substrate binding domain YPDSF_3105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_3106 PF08502 LeuA allosteric (dimerisation) domain YPDSF_3106 PF00682 HMGL-like YPDSF_3107 PF00180 Isocitrate/isopropylmalate dehydrogenase YPDSF_3108 PF00330 Aconitase family (aconitate hydratase) YPDSF_3109 PF00694 Aconitase C-terminal domain YPDSF_3110 PF07690 Major Facilitator Superfamily YPDSF_3111 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPDSF_3111 PF12793 Sugar transport-related sRNA regulator N-term YPDSF_3113 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_3114 PF00005 ABC transporter YPDSF_3115 PF09335 SNARE associated Golgi protein YPDSF_3116 PF03104 DNA polymerase family B, exonuclease domain YPDSF_3116 PF00136 DNA polymerase family B YPDSF_3117 PF00176 SNF2 family N-terminal domain YPDSF_3117 PF12137 RNA polymerase recycling family C-terminal YPDSF_3117 PF00271 Helicase conserved C-terminal domain YPDSF_3117 PF18339 RapA N-terminal Tudor like domain 1 YPDSF_3117 PF18337 RapA N-terminal Tudor like domain YPDSF_3120 PF05736 OprF membrane domain YPDSF_3120 PF00691 OmpA family YPDSF_3127 PF04717 Type VI secretion system, phage-baseplate injector YPDSF_3128 PF17871 AAA lid domain YPDSF_3128 PF07724 AAA domain (Cdc48 subfamily) YPDSF_3128 PF10431 C-terminal, D2-small domain, of ClpB protein YPDSF_3128 PF00004 ATPase family associated with various cellular activities (AAA) YPDSF_3137 PF00849 RNA pseudouridylate synthase YPDSF_3138 PF00226 DnaJ domain YPDSF_3138 PF05099 Tellurite resistance protein TerB YPDSF_3139 PF04453 LPS transport system D YPDSF_3139 PF03968 OstA-like protein YPDSF_3140 PF00639 PPIC-type PPIASE domain YPDSF_3140 PF09312 SurA N-terminal domain YPDSF_3141 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YPDSF_3142 PF00398 Ribosomal RNA adenine dimethylase YPDSF_3143 PF04379 ApaG domain YPDSF_3144 PF00149 Calcineurin-like phosphoesterase YPDSF_3147 PF00186 Dihydrofolate reductase YPDSF_3148 PF12821 Threonine/Serine exporter, ThrE YPDSF_3149 PF06738 Putative threonine/serine exporter YPDSF_3150 PF01810 LysE type translocator YPDSF_3151 PF02142 MGS-like domain YPDSF_3151 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPDSF_3151 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPDSF_3152 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YPDSF_3152 PF00117 Glutamine amidotransferase class-I YPDSF_3153 PF01113 Dihydrodipicolinate reductase, N-terminus YPDSF_3153 PF05173 Dihydrodipicolinate reductase, C-terminus YPDSF_3154 PF02401 LytB protein YPDSF_3155 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPDSF_3156 PF01252 Signal peptidase (SPase) II YPDSF_3157 PF00133 tRNA synthetases class I (I, L, M and V) YPDSF_3157 PF08264 Anticodon-binding domain of tRNA YPDSF_3157 PF06827 Zinc finger found in FPG and IleRS YPDSF_3158 PF01687 Riboflavin kinase YPDSF_3158 PF06574 FAD synthetase YPDSF_3159 PF01649 Ribosomal protein S20 YPDSF_3160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_3160 PF03466 LysR substrate binding domain YPDSF_3161 PF06965 Na+/H+ antiporter 1 YPDSF_3162 PF00226 DnaJ domain YPDSF_3162 PF01556 DnaJ C terminal domain YPDSF_3162 PF00684 DnaJ central domain YPDSF_3163 PF00012 Hsp70 protein YPDSF_3164 PF01184 GPR1/FUN34/yaaH family YPDSF_3166 PF07690 Major Facilitator Superfamily YPDSF_3167 PF00994 Probable molybdopterin binding domain YPDSF_3169 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPDSF_3171 PF03883 Peroxide stress protein YaaA YPDSF_3172 PF00291 Pyridoxal-phosphate dependent enzyme YPDSF_3172 PF14821 Threonine synthase N terminus YPDSF_3173 PF00288 GHMP kinases N terminal domain YPDSF_3173 PF08544 GHMP kinases C terminal YPDSF_3174 PF01842 ACT domain YPDSF_3174 PF13840 ACT domain YPDSF_3174 PF00742 Homoserine dehydrogenase YPDSF_3174 PF03447 Homoserine dehydrogenase, NAD binding domain YPDSF_3174 PF00696 Amino acid kinase family YPDSF_3176 PF00072 Response regulator receiver domain YPDSF_3176 PF00486 Transcriptional regulatory protein, C terminal YPDSF_3177 PF05981 CreA protein YPDSF_3178 PF12833 Helix-turn-helix domain YPDSF_3178 PF06445 GyrI-like small molecule binding domain YPDSF_3179 PF00300 Histidine phosphatase superfamily (branch 1) YPDSF_3180 PF01931 Protein of unknown function DUF84 YPDSF_3181 PF01371 Trp repressor protein YPDSF_3182 PF01464 Transglycosylase SLT domain YPDSF_3182 PF14718 Soluble lytic murein transglycosylase L domain YPDSF_3183 PF00690 Cation transporter/ATPase, N-terminus YPDSF_3183 PF00689 Cation transporting ATPase, C-terminus YPDSF_3185 PF17152 Periplasmic sensor domain YPDSF_3185 PF00990 Diguanylate cyclase, GGDEF domain YPDSF_3186 PF00691 OmpA family YPDSF_3187 PF12848 ABC transporter YPDSF_3187 PF00005 ABC transporter YPDSF_3190 PF01381 Helix-turn-helix YPDSF_3190 PF13521 AAA domain YPDSF_3191 PF18073 Rubredoxin metal binding domain YPDSF_3192 PF18429 Domain of unknown function (DUF5609) YPDSF_3193 PF10144 Bacterial virulence factor haemolysin YPDSF_3194 PF01048 Phosphorylase superfamily YPDSF_3195 PF01676 Metalloenzyme superfamily YPDSF_3196 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPDSF_3196 PF02885 Glycosyl transferase family, helical bundle domain YPDSF_3196 PF00591 Glycosyl transferase family, a/b domain YPDSF_3197 PF01791 DeoC/LacD family aldolase YPDSF_3198 PF07662 Na+ dependent nucleoside transporter C-terminus YPDSF_3198 PF07670 Nucleoside recognition YPDSF_3198 PF01773 Na+ dependent nucleoside transporter N-terminus YPDSF_3199 PF01026 TatD related DNase YPDSF_3200 PF01734 Patatin-like phospholipase YPDSF_3201 PF07043 Protein of unknown function (DUF1328) YPDSF_3202 PF04972 BON domain YPDSF_3203 PF03144 Elongation factor Tu domain 2 YPDSF_3203 PF00009 Elongation factor Tu GTP binding domain YPDSF_3203 PF16658 Class II release factor RF3, C-terminal domain YPDSF_3204 PF00583 Acetyltransferase (GNAT) family YPDSF_3205 PF05175 Methyltransferase small domain YPDSF_3205 PF08468 Methyltransferase small domain N-terminal YPDSF_3206 PF07256 Protein of unknown function (DUF1435) YPDSF_3207 PF00990 Diguanylate cyclase, GGDEF domain YPDSF_3208 PF01095 Pectinesterase YPDSF_3211 PF00873 AcrB/AcrD/AcrF family YPDSF_3212 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPDSF_3215 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPDSF_3216 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPDSF_3216 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPDSF_3217 PF00325 Bacterial regulatory proteins, crp family YPDSF_3217 PF04198 Putative sugar-binding domain YPDSF_3219 PF00005 ABC transporter YPDSF_3220 PF02653 Branched-chain amino acid transport system / permease component YPDSF_3221 PF02653 Branched-chain amino acid transport system / permease component YPDSF_3222 PF13407 Periplasmic binding protein domain YPDSF_3223 PF01791 DeoC/LacD family aldolase YPDSF_3224 PF03992 Antibiotic biosynthesis monooxygenase YPDSF_3225 PF10696 Protein of unknown function (DUF2501) YPDSF_3226 PF05524 PEP-utilising enzyme, N-terminal YPDSF_3226 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPDSF_3226 PF00391 PEP-utilising enzyme, mobile domain YPDSF_3226 PF02896 PEP-utilising enzyme, TIM barrel domain YPDSF_3226 PF00381 PTS HPr component phosphorylation site YPDSF_3228 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPDSF_3229 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPDSF_3230 PF12833 Helix-turn-helix domain YPDSF_3232 PF05987 Bacterial protein of unknown function (DUF898) YPDSF_3235 PF00665 Integrase core domain YPDSF_3241 PF01527 Transposase YPDSF_3243 PF07728 AAA domain (dynein-related subfamily) YPDSF_3243 PF12102 Domain of unknown function (DUF3578) YPDSF_3244 PF02796 Helix-turn-helix domain of resolvase YPDSF_3244 PF00665 Integrase core domain YPDSF_3245 PF01695 IstB-like ATP binding protein YPDSF_3246 PF01119 DNA mismatch repair protein, C-terminal domain YPDSF_3246 PF08676 MutL C terminal dimerisation domain YPDSF_3248 PF00589 Phage integrase family YPDSF_3248 PF13356 Arm DNA-binding domain YPDSF_3249 PF03739 Lipopolysaccharide export system permease LptF/LptG YPDSF_3250 PF03739 Lipopolysaccharide export system permease LptF/LptG YPDSF_3251 PF00883 Cytosol aminopeptidase family, catalytic domain YPDSF_3251 PF02789 Cytosol aminopeptidase family, N-terminal domain YPDSF_3252 PF04364 DNA polymerase III chi subunit, HolC YPDSF_3253 PF08264 Anticodon-binding domain of tRNA YPDSF_3253 PF00133 tRNA synthetases class I (I, L, M and V) YPDSF_3253 PF10458 Valyl tRNA synthetase tRNA binding arm YPDSF_3254 PF00583 Acetyltransferase (GNAT) family YPDSF_3255 PF06877 Regulator of ribonuclease activity B YPDSF_3256 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPDSF_3256 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPDSF_3257 PF04074 YhcH/YjgK/YiaL YPDSF_3260 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_3261 PF12911 N-terminal TM domain of oligopeptide transport permease C YPDSF_3261 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_3262 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPDSF_3262 PF00005 ABC transporter YPDSF_3263 PF00005 ABC transporter YPDSF_3263 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPDSF_3264 PF03477 ATP cone domain YPDSF_3264 PF13597 Anaerobic ribonucleoside-triphosphate reductase YPDSF_3266 PF00392 Bacterial regulatory proteins, gntR family YPDSF_3266 PF07702 UTRA domain YPDSF_3267 PF06754 Phosphonate metabolism protein PhnG YPDSF_3268 PF05845 Bacterial phosphonate metabolism protein (PhnH) YPDSF_3269 PF05861 Bacterial phosphonate metabolism protein (PhnI) YPDSF_3270 PF06007 Phosphonate metabolism protein PhnJ YPDSF_3271 PF00005 ABC transporter YPDSF_3272 PF00005 ABC transporter YPDSF_3273 PF07969 Amidohydrolase family YPDSF_3275 PF12706 Beta-lactamase superfamily domain YPDSF_3276 PF13460 NAD(P)H-binding YPDSF_3279 PF00005 ABC transporter YPDSF_3279 PF03459 TOBE domain YPDSF_3279 PF17912 MalK OB fold domain YPDSF_3280 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_3282 PF13416 Bacterial extracellular solute-binding protein YPDSF_3285 PF01541 GIY-YIG catalytic domain YPDSF_3286 PF13508 Acetyltransferase (GNAT) domain YPDSF_3291 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPDSF_3291 PF02321 Outer membrane efflux protein YPDSF_3292 PF00873 AcrB/AcrD/AcrF family YPDSF_3293 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPDSF_3293 PF00529 HlyD membrane-fusion protein of T1SS YPDSF_3294 PF00296 Luciferase-like monooxygenase YPDSF_3295 PF01381 Helix-turn-helix YPDSF_3297 PF00271 Helicase conserved C-terminal domain YPDSF_3297 PF12343 Cold shock protein DEAD box A YPDSF_3297 PF00270 DEAD/DEAH box helicase YPDSF_3297 PF03880 DbpA RNA binding domain YPDSF_3298 PF07719 Tetratricopeptide repeat YPDSF_3298 PF13181 Tetratricopeptide repeat YPDSF_3299 PF00013 KH domain YPDSF_3299 PF00575 S1 RNA binding domain YPDSF_3299 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YPDSF_3299 PF01138 3' exoribonuclease family, domain 1 YPDSF_3299 PF03725 3' exoribonuclease family, domain 2 YPDSF_3300 PF13276 HTH-like domain YPDSF_3300 PF13333 Integrase core domain YPDSF_3300 PF00665 Integrase core domain YPDSF_3302 PF01266 FAD dependent oxidoreductase YPDSF_3302 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YPDSF_3303 PF00343 Carbohydrate phosphorylase YPDSF_3304 PF00534 Glycosyl transferases group 1 YPDSF_3304 PF08323 Starch synthase catalytic domain YPDSF_3305 PF00483 Nucleotidyl transferase YPDSF_3306 PF18390 Glycogen debranching enzyme C-terminal domain YPDSF_3306 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPDSF_3306 PF00128 Alpha amylase, catalytic domain YPDSF_3307 PF02806 Alpha amylase, C-terminal all-beta domain YPDSF_3307 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPDSF_3307 PF00128 Alpha amylase, catalytic domain YPDSF_3308 PF06580 Histidine kinase YPDSF_3308 PF07694 5TMR of 5TMR-LYT YPDSF_3309 PF09134 Invasin, domain 3 YPDSF_3309 PF11924 Inverse autotransporter, beta-domain YPDSF_3309 PF02369 Bacterial Ig-like domain (group 1) YPDSF_3309 PF07979 Intimin C-type lectin domain YPDSF_3313 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPDSF_3313 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPDSF_3314 PF01914 MarC family integral membrane protein YPDSF_3318 PF01202 Shikimate kinase YPDSF_3319 PF02447 GntP family permease YPDSF_3320 PF00356 Bacterial regulatory proteins, lacI family YPDSF_3320 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPDSF_3321 PF17954 Quercetinase C-terminal cupin domain YPDSF_3321 PF02678 Pirin YPDSF_3322 PF00072 Response regulator receiver domain YPDSF_3322 PF00486 Transcriptional regulatory protein, C terminal YPDSF_3324 PF01116 Fructose-bisphosphate aldolase class-II YPDSF_3326 PF13407 Periplasmic binding protein domain YPDSF_3327 PF02653 Branched-chain amino acid transport system / permease component YPDSF_3328 PF00005 ABC transporter YPDSF_3332 PF01384 Phosphate transporter family YPDSF_3334 PF10625 Universal stress protein B (UspB) YPDSF_3335 PF00582 Universal stress protein family YPDSF_3336 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YPDSF_3336 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPDSF_3337 PF08548 Peptidase M10 serralysin C terminal YPDSF_3337 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YPDSF_3337 PF00413 Matrixin YPDSF_3338 PF04445 Putative SAM-dependent methyltransferase YPDSF_3339 PF01432 Peptidase family M3 YPDSF_3341 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YPDSF_3342 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPDSF_3342 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPDSF_3343 PF13556 PucR C-terminal helix-turn-helix domain YPDSF_3343 PF17853 GGDEF-like domain YPDSF_3343 PF05651 Putative sugar diacid recognition YPDSF_3345 PF02447 GntP family permease YPDSF_3346 PF02595 Glycerate kinase family YPDSF_3351 PF03631 Virulence factor BrkB YPDSF_3352 PF02611 CDP-diacylglycerol pyrophosphatase YPDSF_3353 PF05170 AsmA family YPDSF_3354 PF00563 EAL domain YPDSF_3355 PF01361 Tautomerase enzyme YPDSF_3356 PF00294 pfkB family carbohydrate kinase YPDSF_3357 PF05193 Peptidase M16 inactive domain YPDSF_3357 PF00675 Insulinase (Peptidase family M16) YPDSF_3358 PF00375 Sodium:dicarboxylate symporter family YPDSF_3362 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPDSF_3363 PF00672 HAMP domain YPDSF_3363 PF17154 Gammaproteobacterial periplasmic sensor domain YPDSF_3363 PF00990 Diguanylate cyclase, GGDEF domain YPDSF_3363 PF00563 EAL domain YPDSF_3364 PF01270 Glycosyl hydrolases family 8 YPDSF_3365 PF00005 ABC transporter YPDSF_3365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPDSF_3366 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPDSF_3366 PF00005 ABC transporter YPDSF_3367 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_3367 PF12911 N-terminal TM domain of oligopeptide transport permease C YPDSF_3368 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_3369 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPDSF_3370 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPDSF_3370 PF17287 POTRA domain YPDSF_3370 PF08479 POTRA domain, ShlB-type YPDSF_3371 PF04829 Pre-toxin domain with VENN motif YPDSF_3371 PF05860 haemagglutination activity domain YPDSF_3371 PF13332 Hemagglutinin repeat YPDSF_3371 PF05594 Haemagluttinin repeat YPDSF_3372 PF07690 Major Facilitator Superfamily YPDSF_3373 PF05231 MASE1 YPDSF_3373 PF07730 Histidine kinase YPDSF_3373 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_3374 PF00196 Bacterial regulatory proteins, luxR family YPDSF_3374 PF00072 Response regulator receiver domain YPDSF_3375 PF08019 Phosphoethanolamine transferase EptA/EptB YPDSF_3375 PF00884 Sulfatase YPDSF_3376 PF01695 IstB-like ATP binding protein YPDSF_3377 PF00665 Integrase core domain YPDSF_3377 PF02796 Helix-turn-helix domain of resolvase YPDSF_3378 PF13673 Acetyltransferase (GNAT) domain YPDSF_3379 PF00485 Phosphoribulokinase / Uridine kinase family YPDSF_3380 PF08279 HTH domain YPDSF_3380 PF03099 Biotin/lipoate A/B protein ligase family YPDSF_3380 PF02237 Biotin protein ligase C terminal domain YPDSF_3381 PF01565 FAD binding domain YPDSF_3381 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YPDSF_3382 PF12724 Flavodoxin domain YPDSF_3383 PF02386 Cation transport protein YPDSF_3384 PF09186 Domain of unknown function (DUF1949) YPDSF_3384 PF01205 Uncharacterized protein family UPF0029 YPDSF_3385 PF00557 Metallopeptidase family M24 YPDSF_3386 PF00378 Enoyl-CoA hydratase/isomerase YPDSF_3386 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPDSF_3386 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPDSF_3387 PF02803 Thiolase, C-terminal domain YPDSF_3387 PF00108 Thiolase, N-terminal domain YPDSF_3388 PF00175 Oxidoreductase NAD-binding domain YPDSF_3388 PF00970 Oxidoreductase FAD-binding domain YPDSF_3389 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPDSF_3390 PF02357 Transcription termination factor nusG YPDSF_3391 PF00490 Delta-aminolevulinic acid dehydratase YPDSF_3392 PF01026 TatD related DNase YPDSF_3393 PF00902 Sec-independent protein translocase protein (TatC) YPDSF_3395 PF02416 mttA/Hcf106 family YPDSF_3396 PF03109 ABC1 family YPDSF_3397 PF02036 SCP-2 sterol transfer family YPDSF_3398 PF01209 ubiE/COQ5 methyltransferase family YPDSF_3399 PF02646 RmuC family YPDSF_3400 PF09335 SNARE associated Golgi protein YPDSF_3401 PF02554 Carbon starvation protein CstA YPDSF_3401 PF13722 5TM C-terminal transporter carbon starvation CstA YPDSF_3403 PF01048 Phosphorylase superfamily YPDSF_3404 PF01738 Dienelactone hydrolase family YPDSF_3405 PF01717 Cobalamin-independent synthase, Catalytic domain YPDSF_3405 PF08267 Cobalamin-independent synthase, N-terminal domain YPDSF_3406 PF03466 LysR substrate binding domain YPDSF_3406 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_3407 PF00892 EamA-like transporter family YPDSF_3408 PF03547 Membrane transport protein YPDSF_3409 PF03009 Glycerophosphoryl diester phosphodiesterase family YPDSF_3410 PF00005 ABC transporter YPDSF_3410 PF17912 MalK OB fold domain YPDSF_3411 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_3412 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_3413 PF13416 Bacterial extracellular solute-binding protein YPDSF_3421 PF00005 ABC transporter YPDSF_3422 PF00005 ABC transporter YPDSF_3422 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPDSF_3423 PF02653 Branched-chain amino acid transport system / permease component YPDSF_3423 PF11862 Domain of unknown function (DUF3382) YPDSF_3424 PF02653 Branched-chain amino acid transport system / permease component YPDSF_3425 PF13458 Periplasmic binding protein YPDSF_3426 PF12568 Acetyltransferase (GNAT) domain, PanZ YPDSF_3428 PF00140 Sigma-70 factor, region 1.2 YPDSF_3428 PF04542 Sigma-70 region 2 YPDSF_3428 PF04545 Sigma-70, region 4 YPDSF_3429 PF02687 FtsX-like permease family YPDSF_3429 PF18075 FtsX extracellular domain YPDSF_3430 PF00005 ABC transporter YPDSF_3431 PF00448 SRP54-type protein, GTPase domain YPDSF_3431 PF02881 SRP54-type protein, helical bundle domain YPDSF_3431 PF00448 SRP54-type protein, GTPase domain YPDSF_3431 PF02881 SRP54-type protein, helical bundle domain YPDSF_3433 PF06611 Protein of unknown function (DUF1145) YPDSF_3436 PF07947 YhhN family YPDSF_3437 PF00403 Heavy-metal-associated domain YPDSF_3438 PF01206 Sulfurtransferase TusA YPDSF_3439 PF02592 Putative vitamin uptake transporter YPDSF_3440 PF08786 DcrB YPDSF_3441 PF02754 Cysteine-rich domain YPDSF_3441 PF13183 4Fe-4S dicluster domain YPDSF_3442 PF00890 FAD binding domain YPDSF_3443 PF01266 FAD dependent oxidoreductase YPDSF_3443 PF04324 BFD-like [2Fe-2S] binding domain YPDSF_3444 PF03009 Glycerophosphoryl diester phosphodiesterase family YPDSF_3447 PF12146 Serine aminopeptidase, S33 YPDSF_3448 PF01810 LysE type translocator YPDSF_3449 PF01810 LysE type translocator YPDSF_3450 PF09382 RQC domain YPDSF_3450 PF16124 RecQ zinc-binding YPDSF_3450 PF00570 HRDC domain YPDSF_3450 PF00270 DEAD/DEAH box helicase YPDSF_3450 PF00271 Helicase conserved C-terminal domain YPDSF_3451 PF02253 Phospholipase A1 YPDSF_3452 PF03061 Thioesterase superfamily YPDSF_3453 PF00892 EamA-like transporter family YPDSF_3454 PF01544 CorA-like Mg2+ transporter protein YPDSF_3455 PF09370 Phosphoenolpyruvate hydrolase-like YPDSF_3458 PF00580 UvrD/REP helicase N-terminal domain YPDSF_3458 PF13361 UvrD-like helicase C-terminal domain YPDSF_3459 PF13419 Haloacid dehalogenase-like hydrolase YPDSF_3460 PF02899 Phage integrase, N-terminal SAM-like domain YPDSF_3460 PF00589 Phage integrase family YPDSF_3461 PF04340 Protein of unknown function, DUF484 YPDSF_3462 PF01678 Diaminopimelate epimerase YPDSF_3463 PF13627 Prokaryotic lipoprotein-attachment site YPDSF_3464 PF01491 Frataxin-like domain YPDSF_3465 PF12633 Adenylate cyclase NT domain YPDSF_3465 PF01295 Adenylate cyclase, class-I YPDSF_3467 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YPDSF_3467 PF03900 Porphobilinogen deaminase, C-terminal domain YPDSF_3468 PF02602 Uroporphyrinogen-III synthase HemD YPDSF_3469 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YPDSF_3470 PF07219 HemY protein N-terminus YPDSF_3470 PF07719 Tetratricopeptide repeat YPDSF_3472 PF00324 Amino acid permease YPDSF_3473 PF03808 Glycosyl transferase WecB/TagA/CpsF family YPDSF_3474 PF06899 WzyE protein, O-antigen assembly polymerase YPDSF_3475 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YPDSF_3476 PF01943 Polysaccharide biosynthesis protein YPDSF_3477 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPDSF_3479 PF00483 Nucleotidyl transferase YPDSF_3480 PF16363 GDP-mannose 4,6 dehydratase YPDSF_3481 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPDSF_3481 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPDSF_3481 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPDSF_3482 PF02350 UDP-N-acetylglucosamine 2-epimerase YPDSF_3483 PF02706 Chain length determinant protein YPDSF_3484 PF00953 Glycosyl transferase family 4 YPDSF_3485 PF07498 Rho termination factor, N-terminal domain YPDSF_3485 PF07497 Rho termination factor, RNA-binding domain YPDSF_3485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPDSF_3486 PF00085 Thioredoxin YPDSF_3487 PF00270 DEAD/DEAH box helicase YPDSF_3487 PF00271 Helicase conserved C-terminal domain YPDSF_3488 PF02541 Ppx/GppA phosphatase family YPDSF_3489 PF13361 UvrD-like helicase C-terminal domain YPDSF_3489 PF00580 UvrD/REP helicase N-terminal domain YPDSF_3493 PF02753 Pili assembly chaperone PapD, C-terminal domain YPDSF_3493 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPDSF_3494 PF13953 PapC C-terminal domain YPDSF_3494 PF00577 Outer membrane usher protein YPDSF_3494 PF13954 PapC N-terminal domain YPDSF_3496 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPDSF_3496 PF02753 Pili assembly chaperone PapD, C-terminal domain YPDSF_3501 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YPDSF_3501 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YPDSF_3502 PF03466 LysR substrate binding domain YPDSF_3502 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_3509 PF00585 C-terminal regulatory domain of Threonine dehydratase YPDSF_3509 PF00291 Pyridoxal-phosphate dependent enzyme YPDSF_3510 PF00920 Dehydratase family YPDSF_3511 PF01063 Amino-transferase class IV YPDSF_3513 PF00205 Thiamine pyrophosphate enzyme, central domain YPDSF_3513 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPDSF_3513 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPDSF_3514 PF01078 Magnesium chelatase, subunit ChlI YPDSF_3514 PF13335 Magnesium chelatase, subunit ChlI C-terminal YPDSF_3515 PF04219 Protein of unknown function, DUF YPDSF_3516 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_3516 PF03466 LysR substrate binding domain YPDSF_3517 PF02653 Branched-chain amino acid transport system / permease component YPDSF_3518 PF02653 Branched-chain amino acid transport system / permease component YPDSF_3519 PF00005 ABC transporter YPDSF_3520 PF13407 Periplasmic binding protein domain YPDSF_3521 PF01177 Asp/Glu/Hydantoin racemase YPDSF_3522 PF07715 TonB-dependent Receptor Plug Domain YPDSF_3522 PF00593 TonB dependent receptor YPDSF_3523 PF05958 tRNA (Uracil-5-)-methyltransferase YPDSF_3524 PF07226 Protein of unknown function (DUF1422) YPDSF_3525 PF00440 Bacterial regulatory proteins, tetR family YPDSF_3526 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPDSF_3526 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPDSF_3527 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_3527 PF03466 LysR substrate binding domain YPDSF_3528 PF08534 Redoxin YPDSF_3528 PF00462 Glutaredoxin YPDSF_3529 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPDSF_3529 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPDSF_3530 PF03544 Gram-negative bacterial TonB protein C-terminal YPDSF_3531 PF00529 HlyD membrane-fusion protein of T1SS YPDSF_3532 PF00005 ABC transporter YPDSF_3532 PF00664 ABC transporter transmembrane region YPDSF_3534 PF00593 TonB dependent receptor YPDSF_3534 PF07715 TonB-dependent Receptor Plug Domain YPDSF_3535 PF00206 Lyase YPDSF_3535 PF14698 Argininosuccinate lyase C-terminal YPDSF_3536 PF00696 Amino acid kinase family YPDSF_3537 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPDSF_3537 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPDSF_3538 PF07687 Peptidase dimerisation domain YPDSF_3538 PF01546 Peptidase family M20/M25/M40 YPDSF_3539 PF00311 Phosphoenolpyruvate carboxylase YPDSF_3541 PF13333 Integrase core domain YPDSF_3541 PF13276 HTH-like domain YPDSF_3541 PF00665 Integrase core domain YPDSF_3542 PF00312 Ribosomal protein S15 YPDSF_3543 PF09157 Pseudouridine synthase II TruB, C-terminal YPDSF_3543 PF16198 tRNA pseudouridylate synthase B C-terminal domain YPDSF_3543 PF01509 TruB family pseudouridylate synthase (N terminal domain) YPDSF_3544 PF02033 Ribosome-binding factor A YPDSF_3545 PF04760 Translation initiation factor IF-2, N-terminal region YPDSF_3545 PF00009 Elongation factor Tu GTP binding domain YPDSF_3545 PF03144 Elongation factor Tu domain 2 YPDSF_3545 PF08364 Bacterial translation initiation factor IF-2 associated region YPDSF_3545 PF11987 Translation-initiation factor 2 YPDSF_3546 PF08529 NusA N-terminal domain YPDSF_3546 PF00575 S1 RNA binding domain YPDSF_3546 PF13184 NusA-like KH domain YPDSF_3547 PF17384 RimP C-terminal SH3 domain YPDSF_3547 PF02576 RimP N-terminal domain YPDSF_3548 PF03840 Preprotein translocase SecG subunit YPDSF_3549 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPDSF_3549 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPDSF_3549 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPDSF_3549 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPDSF_3550 PF00809 Pterin binding enzyme YPDSF_3551 PF17862 AAA+ lid domain YPDSF_3551 PF01434 Peptidase family M41 YPDSF_3551 PF06480 FtsH Extracellular YPDSF_3551 PF00004 ATPase family associated with various cellular activities (AAA) YPDSF_3552 PF01728 FtsJ-like methyltransferase YPDSF_3553 PF01985 CRS1 / YhbY (CRM) domain YPDSF_3554 PF03449 Transcription elongation factor, N-terminal YPDSF_3554 PF01272 Transcription elongation factor, GreA/GreB, C-term YPDSF_3555 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YPDSF_3556 PF00486 Transcriptional regulatory protein, C terminal YPDSF_3556 PF00072 Response regulator receiver domain YPDSF_3557 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_3557 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_3557 PF00672 HAMP domain YPDSF_3558 PF01926 50S ribosome-binding GTPase YPDSF_3558 PF01018 GTP1/OBG YPDSF_3559 PF00892 EamA-like transporter family YPDSF_3560 PF01016 Ribosomal L27 protein YPDSF_3561 PF00829 Ribosomal prokaryotic L21 protein YPDSF_3562 PF00348 Polyprenyl synthetase YPDSF_3564 PF13693 Winged helix-turn-helix DNA-binding YPDSF_3565 PF00056 lactate/malate dehydrogenase, NAD binding domain YPDSF_3565 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YPDSF_3566 PF02863 Arginine repressor, C-terminal domain YPDSF_3566 PF01316 Arginine repressor, DNA binding domain YPDSF_3568 PF01225 Mur ligase family, catalytic domain YPDSF_3568 PF08245 Mur ligase middle domain YPDSF_3568 PF02875 Mur ligase family, glutamate ligase domain YPDSF_3569 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YPDSF_3570 PF00719 Inorganic pyrophosphatase YPDSF_3571 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YPDSF_3572 PF04357 TamB, inner membrane protein subunit of TAM complex YPDSF_3573 PF07244 Surface antigen variable number repeat YPDSF_3573 PF17243 POTRA domain TamA domain 1 YPDSF_3573 PF01103 Surface antigen YPDSF_3574 PF01625 Peptide methionine sulfoxide reductase YPDSF_3575 PF01595 Cyclin M transmembrane N-terminal domain YPDSF_3575 PF00571 CBS domain YPDSF_3575 PF03471 Transporter associated domain YPDSF_3576 PF06526 Protein of unknown function (DUF1107) YPDSF_3577 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YPDSF_3578 PF00459 Inositol monophosphatase family YPDSF_3579 PF02872 5'-nucleotidase, C-terminal domain YPDSF_3579 PF00149 Calcineurin-like phosphoesterase YPDSF_3580 PF01814 Hemerythrin HHE cation binding domain YPDSF_3580 PF04405 Domain of Unknown function (DUF542) YPDSF_3581 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPDSF_3581 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPDSF_3582 PF08525 Opacity-associated protein A N-terminal motif YPDSF_3582 PF04225 Opacity-associated protein A LysM-like domain YPDSF_3584 PF01797 Transposase IS200 like YPDSF_3585 PF01281 Ribosomal protein L9, N-terminal domain YPDSF_3585 PF03948 Ribosomal protein L9, C-terminal domain YPDSF_3586 PF01084 Ribosomal protein S18 YPDSF_3587 PF01250 Ribosomal protein S6 YPDSF_3588 PF00326 Prolyl oligopeptidase family YPDSF_3589 PF01695 IstB-like ATP binding protein YPDSF_3590 PF02796 Helix-turn-helix domain of resolvase YPDSF_3590 PF00665 Integrase core domain YPDSF_3591 PF07338 Protein of unknown function (DUF1471) YPDSF_3592 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPDSF_3592 PF18158 Adaptive response protein AidB N-terminal domain YPDSF_3592 PF02770 Acyl-CoA dehydrogenase, middle domain YPDSF_3593 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPDSF_3593 PF00588 SpoU rRNA Methylase family YPDSF_3594 PF00575 S1 RNA binding domain YPDSF_3594 PF00773 RNB domain YPDSF_3594 PF17876 Cold shock domain YPDSF_3594 PF08461 Ribonuclease R winged-helix domain YPDSF_3594 PF08206 Ribonuclease B OB domain YPDSF_3595 PF02082 Transcriptional regulator YPDSF_3596 PF00709 Adenylosuccinate synthetase YPDSF_3597 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) YPDSF_3598 PF01145 SPFH domain / Band 7 family YPDSF_3599 PF12221 Bacterial membrane protein N terminal YPDSF_3599 PF01145 SPFH domain / Band 7 family YPDSF_3600 PF16360 GTP-binding GTPase Middle Region YPDSF_3600 PF13167 GTP-binding GTPase N-terminal YPDSF_3600 PF01926 50S ribosome-binding GTPase YPDSF_3601 PF17209 Hfq protein YPDSF_3603 PF08676 MutL C terminal dimerisation domain YPDSF_3603 PF01119 DNA mismatch repair protein, C-terminal domain YPDSF_3604 PF01520 N-acetylmuramoyl-L-alanine amidase YPDSF_3605 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YPDSF_3606 PF03853 YjeF-related protein N-terminus YPDSF_3606 PF01256 Carbohydrate kinase YPDSF_3607 PF08331 Domain of unknown function (DUF1730) YPDSF_3608 PF00929 Exonuclease YPDSF_3609 PF03193 RsgA GTPase YPDSF_3611 PF02666 Phosphatidylserine decarboxylase YPDSF_3612 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPDSF_3612 PF12795 Mechanosensitive ion channel porin domain YPDSF_3612 PF00924 Mechanosensitive ion channel YPDSF_3613 PF00152 tRNA synthetases class II (D, K and N) YPDSF_3614 PF00890 FAD binding domain YPDSF_3614 PF02910 Fumarate reductase flavoprotein C-term YPDSF_3615 PF13183 4Fe-4S dicluster domain YPDSF_3615 PF13085 2Fe-2S iron-sulfur cluster binding domain YPDSF_3616 PF02300 Fumarate reductase subunit C YPDSF_3617 PF02313 Fumarate reductase subunit D YPDSF_3618 PF00893 Small Multidrug Resistance protein YPDSF_3619 PF01132 Elongation factor P (EF-P) OB domain YPDSF_3619 PF08207 Elongation factor P (EF-P) KOW-like domain YPDSF_3619 PF09285 Elongation factor P, C-terminal YPDSF_3620 PF04055 Radical SAM superfamily YPDSF_3621 PF13698 Domain of unknown function (DUF4156) YPDSF_3622 PF00118 TCP-1/cpn60 chaperonin family YPDSF_3623 PF00166 Chaperonin 10 Kd subunit YPDSF_3624 PF04186 FxsA cytoplasmic membrane protein YPDSF_3625 PF10415 Fumarase C C-terminus YPDSF_3625 PF00206 Lyase YPDSF_3626 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPDSF_3627 PF03091 CutA1 divalent ion tolerance protein YPDSF_3628 PF11412 Disulphide bond corrector protein DsbC YPDSF_3628 PF02683 Cytochrome C biogenesis protein transmembrane region YPDSF_3629 PF01568 Molydopterin dinucleotide binding domain YPDSF_3629 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPDSF_3629 PF00384 Molybdopterin oxidoreductase YPDSF_3630 PF13247 4Fe-4S dicluster domain YPDSF_3630 PF12800 4Fe-4S binding domain YPDSF_3631 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPDSF_3631 PF13247 4Fe-4S dicluster domain YPDSF_3631 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPDSF_3635 PF03400 IS1 transposase YPDSF_3637 PF06379 L-rhamnose-proton symport protein (RhaT) YPDSF_3639 PF02311 AraC-like ligand binding domain YPDSF_3639 PF12833 Helix-turn-helix domain YPDSF_3640 PF02311 AraC-like ligand binding domain YPDSF_3640 PF12833 Helix-turn-helix domain YPDSF_3642 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPDSF_3642 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPDSF_3643 PF06134 L-rhamnose isomerase (RhaA) YPDSF_3644 PF00596 Class II Aldolase and Adducin N-terminal domain YPDSF_3645 PF00465 Iron-containing alcohol dehydrogenase YPDSF_3646 PF05336 L-rhamnose mutarotase YPDSF_3647 PF00436 Single-strand binding protein family YPDSF_3648 PF00005 ABC transporter YPDSF_3648 PF17760 UvrA interaction domain YPDSF_3648 PF17755 UvrA DNA-binding domain YPDSF_3649 PF04237 YjbR YPDSF_3650 PF00155 Aminotransferase class I and II YPDSF_3651 PF01168 Alanine racemase, N-terminal domain YPDSF_3651 PF00842 Alanine racemase, C-terminal domain YPDSF_3652 PF03796 DnaB-like helicase C terminal domain YPDSF_3652 PF00772 DnaB-like helicase N terminal domain YPDSF_3653 PF08240 Alcohol dehydrogenase GroES-like domain YPDSF_3653 PF00107 Zinc-binding dehydrogenase YPDSF_3654 PF09583 Phage shock protein G (Phageshock_PspG) YPDSF_3655 PF01207 Dihydrouridine synthase (Dus) YPDSF_3656 PF01475 Ferric uptake regulator family YPDSF_3657 PF00717 Peptidase S24-like YPDSF_3657 PF01726 LexA DNA binding domain YPDSF_3658 PF01219 Prokaryotic diacylglycerol kinase YPDSF_3659 PF01553 Acyltransferase YPDSF_3660 PF01040 UbiA prenyltransferase family YPDSF_3661 PF04345 Chorismate lyase YPDSF_3663 PF12951 Passenger-associated-transport-repeat YPDSF_3664 PF01565 FAD binding domain YPDSF_3664 PF08031 Berberine and berberine like YPDSF_3667 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPDSF_3668 PF13953 PapC C-terminal domain YPDSF_3668 PF13954 PapC N-terminal domain YPDSF_3668 PF00577 Outer membrane usher protein YPDSF_3670 PF02342 TerD domain YPDSF_3671 PF02342 TerD domain YPDSF_3672 PF03741 Integral membrane protein TerC family YPDSF_3673 PF05099 Tellurite resistance protein TerB YPDSF_3674 PF02342 TerD domain YPDSF_3675 PF02342 TerD domain YPDSF_3679 PF11202 Phosphoribosyl transferase (PRTase) YPDSF_3679 PF15608 PELOTA RNA binding domain YPDSF_3683 PF04055 Radical SAM superfamily YPDSF_3684 PF06228 Haem utilisation ChuX/HutX YPDSF_3685 PF13460 NAD(P)H-binding YPDSF_3686 PF10636 Hemin uptake protein hemP YPDSF_3687 PF00593 TonB dependent receptor YPDSF_3687 PF07715 TonB-dependent Receptor Plug Domain YPDSF_3688 PF05171 Haemin-degrading HemS.ChuX domain YPDSF_3689 PF01497 Periplasmic binding protein YPDSF_3690 PF01032 FecCD transport family YPDSF_3691 PF00005 ABC transporter YPDSF_3692 PF01053 Cys/Met metabolism PLP-dependent enzyme YPDSF_3693 PF03222 Tryptophan/tyrosine permease family YPDSF_3694 PF03466 LysR substrate binding domain YPDSF_3694 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_3695 PF01206 Sulfurtransferase TusA YPDSF_3696 PF04143 Sulphur transport YPDSF_3697 PF01312 FlhB HrpN YscU SpaS Family YPDSF_3698 PF01311 Bacterial export proteins, family 1 YPDSF_3699 PF01313 Bacterial export proteins, family 3 YPDSF_3700 PF00813 FliP family YPDSF_3701 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPDSF_3704 PF18269 T3SS EscN ATPase C-terminal domain YPDSF_3704 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPDSF_3705 PF00771 FHIPEP family YPDSF_3708 PF01514 Secretory protein of YscJ/FliF family YPDSF_3711 PF14525 AraC-binding-like domain YPDSF_3711 PF12833 Helix-turn-helix domain YPDSF_3715 PF00672 HAMP domain YPDSF_3715 PF00072 Response regulator receiver domain YPDSF_3715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_3715 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_3715 PF01627 Hpt domain YPDSF_3715 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPDSF_3716 PF00196 Bacterial regulatory proteins, luxR family YPDSF_3716 PF00072 Response regulator receiver domain YPDSF_3717 PF00375 Sodium:dicarboxylate symporter family YPDSF_3718 PF00501 AMP-binding enzyme YPDSF_3718 PF16177 Acetyl-coenzyme A synthetase N-terminus YPDSF_3718 PF13193 AMP-binding enzyme C-terminal domain YPDSF_3719 PF04341 Protein of unknown function, DUF485 YPDSF_3720 PF00474 Sodium:solute symporter family YPDSF_3722 PF02796 Helix-turn-helix domain of resolvase YPDSF_3722 PF00665 Integrase core domain YPDSF_3723 PF01695 IstB-like ATP binding protein YPDSF_3724 PF13276 HTH-like domain YPDSF_3724 PF13683 Integrase core domain YPDSF_3725 PF01527 Transposase YPDSF_3726 PF01808 AICARFT/IMPCHase bienzyme YPDSF_3726 PF02142 MGS-like domain YPDSF_3727 PF02844 Phosphoribosylglycinamide synthetase, N domain YPDSF_3727 PF02843 Phosphoribosylglycinamide synthetase, C domain YPDSF_3727 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPDSF_3728 PF07356 Protein of unknown function (DUF1481) YPDSF_3729 PF00216 Bacterial DNA-binding protein YPDSF_3730 PF04222 Protein of unknown function (DUF416) YPDSF_3731 PF04493 Endonuclease V YPDSF_3732 PF01208 Uroporphyrinogen decarboxylase (URO-D) YPDSF_3734 PF00293 NUDIX domain YPDSF_3734 PF09297 NADH pyrophosphatase zinc ribbon domain YPDSF_3735 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPDSF_3736 PF01964 Radical SAM ThiC family YPDSF_3736 PF13667 ThiC-associated domain YPDSF_3737 PF02581 Thiamine monophosphate synthase YPDSF_3738 PF00899 ThiF family YPDSF_3744 PF05000 RNA polymerase Rpb1, domain 4 YPDSF_3744 PF04997 RNA polymerase Rpb1, domain 1 YPDSF_3744 PF00623 RNA polymerase Rpb1, domain 2 YPDSF_3744 PF04983 RNA polymerase Rpb1, domain 3 YPDSF_3744 PF04998 RNA polymerase Rpb1, domain 5 YPDSF_3745 PF04565 RNA polymerase Rpb2, domain 3 YPDSF_3745 PF04563 RNA polymerase beta subunit YPDSF_3745 PF10385 RNA polymerase beta subunit external 1 domain YPDSF_3745 PF04561 RNA polymerase Rpb2, domain 2 YPDSF_3745 PF04560 RNA polymerase Rpb2, domain 7 YPDSF_3745 PF00562 RNA polymerase Rpb2, domain 6 YPDSF_3746 PF00542 Ribosomal protein L7/L12 C-terminal domain YPDSF_3746 PF16320 Ribosomal protein L7/L12 dimerisation domain YPDSF_3747 PF00466 Ribosomal protein L10 YPDSF_3748 PF00687 Ribosomal protein L1p/L10e family YPDSF_3749 PF00298 Ribosomal protein L11, RNA binding domain YPDSF_3749 PF03946 Ribosomal protein L11, N-terminal domain YPDSF_3750 PF02357 Transcription termination factor nusG YPDSF_3750 PF00467 KOW motif YPDSF_3751 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YPDSF_3752 PF00009 Elongation factor Tu GTP binding domain YPDSF_3752 PF03144 Elongation factor Tu domain 2 YPDSF_3752 PF03143 Elongation factor Tu C-terminal domain YPDSF_3753 PF01695 IstB-like ATP binding protein YPDSF_3754 PF01695 IstB-like ATP binding protein YPDSF_3755 PF00665 Integrase core domain YPDSF_3755 PF02796 Helix-turn-helix domain of resolvase YPDSF_3756 PF12146 Serine aminopeptidase, S33 YPDSF_3758 PF00324 Amino acid permease YPDSF_3759 PF00221 Aromatic amino acid lyase YPDSF_3760 PF17391 Urocanase N-terminal domain YPDSF_3760 PF01175 Urocanase Rossmann-like domain YPDSF_3760 PF17392 Urocanase C-terminal domain YPDSF_3761 PF00291 Pyridoxal-phosphate dependent enzyme YPDSF_3762 PF00156 Phosphoribosyl transferase domain YPDSF_3765 PF01497 Periplasmic binding protein YPDSF_3766 PF01032 FecCD transport family YPDSF_3767 PF01032 FecCD transport family YPDSF_3768 PF00005 ABC transporter YPDSF_3772 PF13737 Transposase DDE domain YPDSF_3773 PF13737 Transposase DDE domain YPDSF_3775 PF14659 Phage integrase, N-terminal SAM-like domain YPDSF_3775 PF00589 Phage integrase family YPDSF_3775 PF13356 Arm DNA-binding domain YPDSF_3776 PF12833 Helix-turn-helix domain YPDSF_3777 PF02653 Branched-chain amino acid transport system / permease component YPDSF_3778 PF00005 ABC transporter YPDSF_3779 PF13407 Periplasmic binding protein domain YPDSF_3781 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPDSF_3781 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPDSF_3783 PF02753 Pili assembly chaperone PapD, C-terminal domain YPDSF_3783 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPDSF_3784 PF13954 PapC N-terminal domain YPDSF_3784 PF13953 PapC C-terminal domain YPDSF_3784 PF00577 Outer membrane usher protein YPDSF_3785 PF00577 Outer membrane usher protein YPDSF_3785 PF13953 PapC C-terminal domain YPDSF_3785 PF13954 PapC N-terminal domain YPDSF_3786 PF00419 Fimbrial protein YPDSF_3787 PF01757 Acyltransferase family YPDSF_3789 PF13276 HTH-like domain YPDSF_3789 PF13333 Integrase core domain YPDSF_3789 PF00665 Integrase core domain YPDSF_3790 PF02219 Methylenetetrahydrofolate reductase YPDSF_3791 PF03447 Homoserine dehydrogenase, NAD binding domain YPDSF_3791 PF00742 Homoserine dehydrogenase YPDSF_3791 PF00696 Amino acid kinase family YPDSF_3792 PF01053 Cys/Met metabolism PLP-dependent enzyme YPDSF_3793 PF01340 Met Apo-repressor, MetJ YPDSF_3795 PF05360 yiaA/B two helix domain YPDSF_3796 PF01197 Ribosomal protein L31 YPDSF_3797 PF00271 Helicase conserved C-terminal domain YPDSF_3797 PF17764 3′ DNA-binding domain (3′BD) YPDSF_3797 PF18074 Primosomal protein N C-terminal domain YPDSF_3797 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YPDSF_3797 PF00270 DEAD/DEAH box helicase YPDSF_3798 PF00356 Bacterial regulatory proteins, lacI family YPDSF_3799 PF05036 Sporulation related domain YPDSF_3800 PF00227 Proteasome subunit YPDSF_3801 PF10431 C-terminal, D2-small domain, of ClpB protein YPDSF_3801 PF07724 AAA domain (Cdc48 subfamily) YPDSF_3801 PF00004 ATPase family associated with various cellular activities (AAA) YPDSF_3802 PF01040 UbiA prenyltransferase family YPDSF_3803 PF03737 Aldolase/RraA YPDSF_3807 PF00529 HlyD membrane-fusion protein of T1SS YPDSF_3807 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPDSF_3808 PF03412 Peptidase C39 family YPDSF_3808 PF00664 ABC transporter transmembrane region YPDSF_3808 PF00005 ABC transporter YPDSF_3811 PF06005 Cell division protein ZapB YPDSF_3812 PF00230 Major intrinsic protein YPDSF_3813 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPDSF_3813 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPDSF_3814 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YPDSF_3815 PF00970 Oxidoreductase FAD-binding domain YPDSF_3815 PF00175 Oxidoreductase NAD-binding domain YPDSF_3816 PF05656 Protein of unknown function (DUF805) YPDSF_3817 PF07305 Protein of unknown function (DUF1454) YPDSF_3818 PF00121 Triosephosphate isomerase YPDSF_3819 PF03466 LysR substrate binding domain YPDSF_3819 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPDSF_3820 PF02585 GlcNAc-PI de-N-acetylase YPDSF_3821 PF03737 Aldolase/RraA YPDSF_3826 PF00365 Phosphofructokinase YPDSF_3827 PF01545 Cation efflux family YPDSF_3827 PF16916 Dimerisation domain of Zinc Transporter YPDSF_3828 PF04754 Putative transposase, YhgA-like YPDSF_3830 PF00589 Phage integrase family YPDSF_3830 PF02899 Phage integrase, N-terminal SAM-like domain YPDSF_3831 PF07813 LTXXQ motif family protein YPDSF_3832 PF00486 Transcriptional regulatory protein, C terminal YPDSF_3832 PF00072 Response regulator receiver domain YPDSF_3833 PF00672 HAMP domain YPDSF_3833 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_3833 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_3833 PF16527 Two-component sensor protein CpxA, periplasmic domain YPDSF_3834 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPDSF_3834 PF12833 Helix-turn-helix domain YPDSF_3834 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPDSF_3834 PF02805 Metal binding domain of Ada YPDSF_3835 PF00588 SpoU rRNA Methylase family YPDSF_3836 PF06426 Serine acetyltransferase, N-terminal YPDSF_3836 PF00132 Bacterial transferase hexapeptide (six repeats) YPDSF_3837 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YPDSF_3837 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YPDSF_3838 PF02556 Preprotein translocase subunit SecB YPDSF_3839 PF00462 Glutaredoxin YPDSF_3840 PF00581 Rhodanese-like domain YPDSF_3841 PF01676 Metalloenzyme superfamily YPDSF_3841 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YPDSF_3842 PF01551 Peptidase family M23 YPDSF_3843 PF04748 Divergent polysaccharide deacetylase YPDSF_3844 PF04748 Divergent polysaccharide deacetylase YPDSF_3845 PF00107 Zinc-binding dehydrogenase YPDSF_3845 PF08240 Alcohol dehydrogenase GroES-like domain YPDSF_3846 PF00155 Aminotransferase class I and II YPDSF_3847 PF01370 NAD dependent epimerase/dehydratase family YPDSF_3848 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPDSF_3849 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPDSF_3850 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YPDSF_3851 PF00535 Glycosyl transferase family 2 YPDSF_3852 PF01467 Cytidylyltransferase-like YPDSF_3853 PF06827 Zinc finger found in FPG and IleRS YPDSF_3853 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YPDSF_3853 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YPDSF_3854 PF00471 Ribosomal protein L33 YPDSF_3855 PF00830 Ribosomal L28 family YPDSF_3856 PF04002 RadC-like JAB domain YPDSF_3857 PF02441 Flavoprotein YPDSF_3857 PF04127 DNA / pantothenate metabolism flavoprotein YPDSF_3858 PF00692 dUTPase YPDSF_3859 PF00440 Bacterial regulatory proteins, tetR family YPDSF_3860 PF00156 Phosphoribosyl transferase domain YPDSF_3861 PF03725 3' exoribonuclease family, domain 2 YPDSF_3861 PF01138 3' exoribonuclease family, domain 1 YPDSF_3862 PF03755 YicC-like family, N-terminal region YPDSF_3862 PF08340 Domain of unknown function (DUF1732) YPDSF_3863 PF03458 UPF0126 domain YPDSF_3864 PF03120 NAD-dependent DNA ligase OB-fold domain YPDSF_3864 PF01653 NAD-dependent DNA ligase adenylation domain YPDSF_3865 PF00625 Guanylate kinase YPDSF_3866 PF01192 RNA polymerase Rpb6 YPDSF_3867 PF02824 TGS domain YPDSF_3867 PF04607 Region found in RelA / SpoT proteins YPDSF_3867 PF13291 ACT domain YPDSF_3868 PF12105 SpoU, rRNA methylase, C-terminal YPDSF_3868 PF00588 SpoU rRNA Methylase family YPDSF_3869 PF17191 RecG wedge domain YPDSF_3869 PF00271 Helicase conserved C-terminal domain YPDSF_3869 PF00270 DEAD/DEAH box helicase YPDSF_3870 PF03616 Sodium/glutamate symporter YPDSF_3871 PF00860 Permease family YPDSF_3872 PF05170 AsmA family YPDSF_3873 PF09500 Putative thioesterase (yiiD_Cterm) YPDSF_3873 PF00583 Acetyltransferase (GNAT) family YPDSF_3874 PF00665 Integrase core domain YPDSF_3874 PF02796 Helix-turn-helix domain of resolvase YPDSF_3875 PF01695 IstB-like ATP binding protein YPDSF_3876 PF02580 D-Tyr-tRNA(Tyr) deacylase YPDSF_3877 PF03631 Virulence factor BrkB YPDSF_3878 PF13419 Haloacid dehalogenase-like hydrolase YPDSF_3880 PF00120 Glutamine synthetase, catalytic domain YPDSF_3880 PF03951 Glutamine synthetase, beta-Grasp domain YPDSF_3881 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPDSF_3881 PF00512 His Kinase A (phospho-acceptor) domain YPDSF_3881 PF00989 PAS fold YPDSF_3882 PF02954 Bacterial regulatory protein, Fis family YPDSF_3882 PF00072 Response regulator receiver domain YPDSF_3882 PF00158 Sigma-54 interaction domain YPDSF_3883 PF04055 Radical SAM superfamily YPDSF_3883 PF06969 HemN C-terminal domain YPDSF_3884 PF04220 Der GTPase activator (YihI) YPDSF_3885 PF01926 50S ribosome-binding GTPase YPDSF_3886 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPDSF_3886 PF00476 DNA polymerase family A YPDSF_3886 PF01612 3'-5' exonuclease YPDSF_3886 PF01367 5'-3' exonuclease, C-terminal SAM fold YPDSF_3887 PF01323 DSBA-like thioredoxin domain YPDSF_3888 PF01636 Phosphotransferase enzyme family YPDSF_3889 PF06288 Protein of unknown function (DUF1040) YPDSF_3890 PF12804 MobA-like NTP transferase domain YPDSF_3891 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YPDSF_3892 PF00872 Transposase, Mutator family YPDSF_3893 PF00392 Bacterial regulatory proteins, gntR family YPDSF_3893 PF07729 FCD domain YPDSF_3894 PF07690 Major Facilitator Superfamily YPDSF_3898 PF05025 RbsD / FucU transport protein family YPDSF_3899 PF02705 K+ potassium transporter YPDSF_3900 PF07728 AAA domain (dynein-related subfamily) YPDSF_3900 PF12592 Protein of unknown function (DUF3763) YPDSF_3900 PF17868 AAA lid domain YPDSF_3901 PF05762 VWA domain containing CoxE-like protein YPDSF_3902 PF03590 Aspartate-ammonia ligase YPDSF_3903 PF01037 Lrp/AsnC ligand binding domain YPDSF_3904 PF00258 Flavodoxin YPDSF_3905 PF01134 Glucose inhibited division protein A YPDSF_3905 PF13932 GidA associated domain YPDSF_3906 PF02527 rRNA small subunit methyltransferase G YPDSF_3907 PF03899 ATP synthase I chain YPDSF_3908 PF00119 ATP synthase A chain YPDSF_3909 PF00137 ATP synthase subunit C YPDSF_3910 PF00430 ATP synthase B/B' CF(0) YPDSF_3911 PF00213 ATP synthase delta (OSCP) subunit YPDSF_3912 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPDSF_3912 PF00306 ATP synthase alpha/beta chain, C terminal domain YPDSF_3912 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPDSF_3913 PF00231 ATP synthase YPDSF_3914 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPDSF_3914 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPDSF_3915 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YPDSF_3915 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YPDSF_3916 PF12804 MobA-like NTP transferase domain YPDSF_3916 PF00132 Bacterial transferase hexapeptide (six repeats) YPDSF_3917 PF01380 SIS domain YPDSF_3918 PF12849 PBP superfamily domain YPDSF_3919 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_3920 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_3921 PF00005 ABC transporter YPDSF_3922 PF01895 PhoU domain YPDSF_3924 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPDSF_3925 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_3926 PF00528 Binding-protein-dependent transport system inner membrane component YPDSF_3927 PF13419 Haloacid dehalogenase-like hydrolase YPDSF_3928 PF00860 Permease family YPDSF_3930 PF07055 Enoyl reductase FAD binding domain YPDSF_3930 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YPDSF_3930 PF12241 Trans-2-enoyl-CoA reductase catalytic region YPDSF_3931 PF10396 GTP-binding protein TrmE N-terminus YPDSF_3931 PF12631 MnmE helical domain YPDSF_3931 PF01926 50S ribosome-binding GTPase YPDSF_3932 PF02096 60Kd inner membrane protein YPDSF_3932 PF14849 YidC periplasmic domain YPDSF_3933 PF01809 Putative membrane protein insertion efficiency factor YPDSF_3934 PF00825 Ribonuclease P YPDSF_3935 PF00468 Ribosomal protein L34 YPDSF_3939 PF10723 Replication regulatory protein RepB YPDSF_3941 PF02387 IncFII RepA protein family YPDSF_3944 PF00069 Protein kinase domain YPDSF_3944 PF09632 Rac1-binding domain YPDSF_3947 PF13276 HTH-like domain YPDSF_3947 PF13683 Integrase core domain YPDSF_3948 PF13007 Transposase C of IS166 homeodomain YPDSF_3948 PF13817 IS66 C-terminal element YPDSF_3948 PF13005 zinc-finger binding domain of transposase IS66 YPDSF_3948 PF03050 Transposase IS66 family YPDSF_3949 PF09013 YopH, N-terminal YPDSF_3949 PF00102 Protein-tyrosine phosphatase YPDSF_3951 PF13683 Integrase core domain YPDSF_3951 PF13276 HTH-like domain YPDSF_3952 PF01695 IstB-like ATP binding protein YPDSF_3953 PF02796 Helix-turn-helix domain of resolvase YPDSF_3953 PF00665 Integrase core domain YPDSF_3956 PF01527 Transposase YPDSF_3957 PF09013 YopH, N-terminal YPDSF_3958 PF02108 Flagellar assembly protein FliH YPDSF_3959 PF06578 YOP proteins translocation protein K (YscK) YPDSF_3960 PF01514 Secretory protein of YscJ/FliF family YPDSF_3961 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI YPDSF_3962 PF09025 YopR, type III needle-polymerisation regulator YPDSF_3963 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) YPDSF_3964 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF YPDSF_3965 PF08988 Type III secretion system, cytoplasmic E component of needle YPDSF_3966 PF16697 Inner membrane component of T3SS, cytoplasmic domain YPDSF_3966 PF16693 Inner membrane component of T3SS, periplasmic domain YPDSF_3968 PF05932 Tir chaperone protein (CesT) family YPDSF_3969 PF02311 AraC-like ligand binding domain YPDSF_3969 PF12833 Helix-turn-helix domain YPDSF_3970 PF01312 FlhB HrpN YscU SpaS Family YPDSF_3971 PF01311 Bacterial export proteins, family 1 YPDSF_3972 PF01313 Bacterial export proteins, family 3 YPDSF_3973 PF00813 FliP family YPDSF_3974 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPDSF_3975 PF02120 Flagellar hook-length control protein FliK YPDSF_3976 PF07321 Type III secretion protein YscO YPDSF_3977 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPDSF_3977 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPDSF_3977 PF18269 T3SS EscN ATPase C-terminal domain YPDSF_3978 PF07201 HrpJ-like domain YPDSF_3979 PF09059 TyeA YPDSF_3981 PF09474 Type III secretion system YscX (type_III_YscX) YPDSF_3983 PF00771 FHIPEP family YPDSF_3984 PF09621 Type III secretion system regulator (LcrR) YPDSF_3985 PF07216 LcrG protein YPDSF_3986 PF04792 V antigen (LcrV) protein YPDSF_3987 PF07720 Tetratricopeptide repeat YPDSF_3988 PF04888 Secretion system effector C (SseC) like family YPDSF_3989 PF05844 YopD protein YPDSF_3990 PF00872 Transposase, Mutator family YPDSF_3996 PF12468 Type III secretion system leucine rich repeat protein YPDSF_4000 PF05932 Tir chaperone protein (CesT) family YPDSF_4001 PF03543 Yersinia/Haemophilus virulence surface antigen YPDSF_4003 PF05818 Enterobacterial TraT complement resistance protein YPDSF_4005 PF13276 HTH-like domain YPDSF_4005 PF13333 Integrase core domain YPDSF_4005 PF00665 Integrase core domain YPDSF_4008 PF13614 AAA domain YPDSF_4009 PF02195 ParB-like nuclease domain YPDSF_4009 PF18090 Centromere-binding protein HTH domain YPDSF_4011 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH YPDSF_4013 PF03545 Yersinia virulence determinant (YopE) YPDSF_4013 PF09020 YopE, N terminal YPDSF_4014 PF05932 Tir chaperone protein (CesT) family YPDSF_4015 PF13276 HTH-like domain YPDSF_4015 PF13683 Integrase core domain YPDSF_4016 PF00665 Integrase core domain YPDSF_4017 PF01695 IstB-like ATP binding protein YPDSF_4019 PF13276 HTH-like domain YPDSF_4019 PF13683 Integrase core domain YPDSF_4020 PF01527 Transposase YPDSF_4021 PF00239 Resolvase, N terminal domain YPDSF_4021 PF02796 Helix-turn-helix domain of resolvase YPDSF_4022 PF13700 Domain of unknown function (DUF4158) YPDSF_4022 PF01526 Tn3 transposase DDE domain YPDSF_4024 PF05658 Head domain of trimeric autotransporter adhesin YPDSF_4024 PF03895 YadA-like membrane anchor domain YPDSF_4024 PF05662 Coiled stalk of trimeric autotransporter adhesin YPDSF_4027 PF18340 DNA relaxase TraI 2B/2B-like domain YPDSF_4027 PF07057 DNA helicase TraI YPDSF_4027 PF18272 single-stranded DNA binding TraI N-terminal subdomain YPDSF_4027 PF08751 TrwC relaxase YPDSF_4029 PF00665 Integrase core domain YPDSF_4029 PF02796 Helix-turn-helix domain of resolvase YPDSF_4030 PF01695 IstB-like ATP binding protein YPDSF_4031 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPDSF_4032 PF07484 Phage Tail Collar Domain YPDSF_4032 PF03335 Phage tail fibre repeat YPDSF_4032 PF07484 Phage Tail Collar Domain YPDSF_4032 PF08400 Prophage tail fibre N-terminal YPDSF_4032 PF03335 Phage tail fibre repeat YPDSF_4032 PF08400 Prophage tail fibre N-terminal YPDSF_4057 PF03412 Peptidase C39 family YPDSF_4057 PF00005 ABC transporter YPDSF_4057 PF00664 ABC transporter transmembrane region YPDSF_4058 PF02195 ParB-like nuclease domain YPDSF_4058 PF17762 HTH domain found in ParB protein YPDSF_4059 PF02195 ParB-like nuclease domain YPDSF_4059 PF17762 HTH domain found in ParB protein YPDSF_4060 PF00270 DEAD/DEAH box helicase YPDSF_4060 PF17191 RecG wedge domain YPDSF_4060 PF00271 Helicase conserved C-terminal domain YPDSF_4068 PF01797 Transposase IS200 like YPDSF_4070 PF00268 Ribonucleotide reductase, small chain YPDSF_4071 PF00317 Ribonucleotide reductase, all-alpha domain YPDSF_4071 PF02867 Ribonucleotide reductase, barrel domain YPDSF_4071 PF03477 ATP cone domain YPDSF_4077 PF01051 Initiator Replication protein YPDSF_4084 PF00154 recA bacterial DNA recombination protein YPDSF_4086 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPDSF_4086 PF01367 5'-3' exonuclease, C-terminal SAM fold YPDSF_4091 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPDSF_4091 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPDSF_4091 PF14579 Helix-hairpin-helix motif YPDSF_4091 PF02811 PHP domain YPDSF_4093 PF11775 Cobalamin biosynthesis protein CobT VWA domain YPDSF_4093 PF06213 Cobalamin biosynthesis protein CobT YPDSF_4097 PF00577 Outer membrane usher protein YPDSF_4097 PF13954 PapC N-terminal domain YPDSF_4097 PF13953 PapC C-terminal domain YPDSF_4098 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPDSF_4098 PF02753 Pili assembly chaperone PapD, C-terminal domain YPDSF_4104 PF00872 Transposase, Mutator family YPDSF_4105 PF07916 TraG-like protein, N-terminal region YPDSF_4106 PF06122 Conjugative relaxosome accessory transposon protein YPDSF_4107 PF13728 F plasmid transfer operon protein YPDSF_4108 PF09679 Type-F conjugative transfer system pilin chaperone (TraQ) YPDSF_4109 PF13728 F plasmid transfer operon protein YPDSF_4110 PF06986 Type-1V conjugative transfer system mating pair stabilisation YPDSF_4111 PF09673 Type-F conjugative transfer system pilin assembly protein YPDSF_4112 PF06834 TraU protein YPDSF_4113 PF12477 Sex factor F TraW protein N terminal YPDSF_4114 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) YPDSF_4115 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer YPDSF_4117 PF09676 Type IV conjugative transfer system lipoprotein (TraV) YPDSF_4118 PF03743 Bacterial conjugation TrbI-like protein YPDSF_4119 PF06586 TraK protein YPDSF_4120 PF05309 TraE protein YPDSF_4121 PF07178 TraL protein YPDSF_4122 PF05513 TraA YPDSF_4123 PF00872 Transposase, Mutator family YPDSF_4124 PF10412 Type IV secretion-system coupling protein DNA-binding domain YPDSF_4124 PF12615 F sex factor protein N terminal YPDSF_4125 PF08751 TrwC relaxase YPDSF_4125 PF18272 single-stranded DNA binding TraI N-terminal subdomain YPDSF_4125 PF07057 DNA helicase TraI YPDSF_4125 PF18340 DNA relaxase TraI 2B/2B-like domain YPDSF_4126 PF05857 TraX protein YPDSF_4128 PF06965 Na+/H+ antiporter 1 YPDSF_4128 PF13462 Thioredoxin YPDSF_4130 PF02387 IncFII RepA protein family YPDSF_4131 PF01548 Transposase YPDSF_4131 PF02371 Transposase IS116/IS110/IS902 family YPDSF_4132 PF04754 Putative transposase, YhgA-like YPDSF_4133 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) YPDSF_4135 PF13091 PLD-like domain YPDSF_4137 PF04754 Putative transposase, YhgA-like YPDSF_4138 PF02796 Helix-turn-helix domain of resolvase YPDSF_4138 PF00239 Resolvase, N terminal domain YPDSF_4140 PF13614 AAA domain YPDSF_4140 PF18607 ParA helix turn helix domain YPDSF_4141 PF02195 ParB-like nuclease domain YPDSF_4141 PF08775 ParB family YPDSF_4143 PF01555 DNA methylase YPDSF_4145 PF07128 Protein of unknown function (DUF1380) YPDSF_4148 PF06006 Bacterial protein of unknown function (DUF905) YPDSF_4149 PF02195 ParB-like nuclease domain YPDSF_4154 PF09255 Caf1 Capsule antigen YPDSF_4155 PF12833 Helix-turn-helix domain YPDSF_4155 PF06445 GyrI-like small molecule binding domain YPDSF_4158 PF00817 impB/mucB/samB family YPDSF_4158 PF13438 Domain of unknown function (DUF4113) YPDSF_4158 PF11799 impB/mucB/samB family C-terminal domain