YPDSF_0001 SM00382 ATPases associated with a variety of cellular activities YPDSF_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain YPDSF_0002 SM00480 DNA polymerase III beta subunit YPDSF_0004 SM00387 Histidine kinase-like ATPases YPDSF_0004 SM00433 TopoisomeraseII YPDSF_0016 SM00642 Alpha-amylase domain YPDSF_0031 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPDSF_0031 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPDSF_0031 SM01358 YPDSF_0031 YPDSF_0034 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPDSF_0048 SM00420 helix_turn_helix, Deoxyribose operon repressor YPDSF_0048 SM01134 YPDSF_0048 YPDSF_0050 SM00450 Rhodanese Homology Domain YPDSF_0051 SM00421 helix_turn_helix, Lux Regulon YPDSF_0060 SM00899 YPDSF_0060 YPDSF_0061 SM00316 Ribosomal protein S1-like RNA-binding domain YPDSF_0061 SM00732 Likely ribonuclease with RNase H fold. YPDSF_0063 SM00448 cheY-homologous receiver domain YPDSF_0063 SM00862 Transcriptional regulatory protein, C terminal YPDSF_0064 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPDSF_0064 SM00387 Histidine kinase-like ATPases YPDSF_0064 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_0067 SM00363 S4 RNA-binding domain YPDSF_0092 SM00354 helix_turn _helix lactose operon repressor YPDSF_0100 SM00100 Cyclic nucleotide-monophosphate binding domain YPDSF_0100 SM00419 helix_turn_helix, cAMP Regulatory protein YPDSF_0107 SM00062 Bacterial periplasmic substrate-binding proteins YPDSF_0108 SM00382 ATPases associated with a variety of cellular activities YPDSF_0114 SM00382 ATPases associated with a variety of cellular activities YPDSF_0127 SM00838 Elongation factor G C-terminus YPDSF_0127 SM00889 Elongation factor G, domain IV YPDSF_0129 SM01321 YPDSF_0129 YPDSF_0132 SM01403 YPDSF_0132 YPDSF_0136 SM01382 YPDSF_0136 YPDSF_0136 SM01383 YPDSF_0136 YPDSF_0139 SM00322 K homology RNA-binding domain YPDSF_0143 SM01374 YPDSF_0143 YPDSF_0144 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPDSF_0155 SM00363 S4 RNA-binding domain YPDSF_0155 SM01390 YPDSF_0155 YPDSF_0156 SM00662 RNA polymerases D YPDSF_0158 SM00422 helix_turn_helix, mercury resistance YPDSF_0176 SM00346 helix_turn_helix isocitrate lyase regulation YPDSF_0177 SM01018 B12 binding domain YPDSF_0188 SM00382 ATPases associated with a variety of cellular activities YPDSF_0205 SM00382 ATPases associated with a variety of cellular activities YPDSF_0205 SM01086 C-terminal, D2-small domain, of ClpB protein YPDSF_0218 SM00530 Helix-turn-helix XRE-family like proteins YPDSF_0226 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_0229 SM01133 YPDSF_0229 YPDSF_0231 SM00062 Bacterial periplasmic substrate-binding proteins YPDSF_0234 SM00382 ATPases associated with a variety of cellular activities YPDSF_0241 SM00382 ATPases associated with a variety of cellular activities YPDSF_0249 SM01321 YPDSF_0249 YPDSF_0250 SM00357 Cold shock protein domain YPDSF_0251 SM00357 Cold shock protein domain YPDSF_0254 SM00849 Metallo-beta-lactamase superfamily YPDSF_0258 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPDSF_0258 SM00895 YPDSF_0258 YPDSF_0265 SM00878 Biotin carboxylase C-terminal domain YPDSF_0270 SM00829 Enoylreductase YPDSF_0271 SM00052 Putative diguanylate phosphodiesterase YPDSF_0271 SM00267 diguanylate cyclase YPDSF_0276 SM00316 Ribosomal protein S1-like RNA-binding domain YPDSF_0303 SM00642 Alpha-amylase domain YPDSF_0305 SM00354 helix_turn _helix lactose operon repressor YPDSF_0316 SM00382 ATPases associated with a variety of cellular activities YPDSF_0320 SM00116 Domain in cystathionine beta-synthase and other proteins. YPDSF_0322 SM00382 ATPases associated with a variety of cellular activities YPDSF_0329 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPDSF_0330 SM01321 YPDSF_0330 YPDSF_0331 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPDSF_0341 SM00729 Elongator protein 3, MiaB family, Radical SAM YPDSF_0342 SM00073 Histidine Phosphotransfer domain YPDSF_0342 SM00091 PAS domain YPDSF_0342 SM00387 Histidine kinase-like ATPases YPDSF_0342 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_0342 SM00448 cheY-homologous receiver domain YPDSF_0346 SM00749 bacterial OsmY and nodulation domain YPDSF_0363 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPDSF_0363 SM00895 YPDSF_0363 YPDSF_0368 SM00858 YPDSF_0368 YPDSF_0370 SM01321 YPDSF_0370 YPDSF_0374 SM00869 Autotransporter beta-domain YPDSF_0378 SM00220 Serine/Threonine protein kinases, catalytic domain YPDSF_0382 SM00327 von Willebrand factor (vWF) type A domain YPDSF_0384 SM00327 von Willebrand factor (vWF) type A domain YPDSF_0386 SM00912 haemagglutination activity domain YPDSF_0391 SM00869 Autotransporter beta-domain YPDSF_0394 SM00382 ATPases associated with a variety of cellular activities YPDSF_0396 SM00354 helix_turn _helix lactose operon repressor YPDSF_0401 SM01217 YPDSF_0401 YPDSF_0417 SM00382 ATPases associated with a variety of cellular activities YPDSF_0428 SM00400 zinc finger YPDSF_0428 SM00493 YPDSF_0428 YPDSF_0428 SM00766 DNA primase DnaG DnaB-binding YPDSF_0431 SM01207 YPDSF_0431 YPDSF_0432 SM00905 Dihydroneopterin aldolase YPDSF_0434 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPDSF_0435 SM00287 Bacterial SH3 domain homologues YPDSF_0436 SM01118 YPDSF_0436 YPDSF_0450 SM00387 Histidine kinase-like ATPases YPDSF_0450 SM00433 TopoisomeraseII YPDSF_0454 SM00434 DNA Topoisomerase IV YPDSF_0455 SM00563 Phosphate acyltransferases YPDSF_0463 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_0480 SM01321 YPDSF_0480 YPDSF_0496 SM00382 ATPases associated with a variety of cellular activities YPDSF_0501 SM00382 ATPases associated with a variety of cellular activities YPDSF_0505 SM00858 YPDSF_0505 YPDSF_0519 SM00862 Transcriptional regulatory protein, C terminal YPDSF_0527 SM01006 Siderophore biosynthesis protein domain YPDSF_0533 SM00421 helix_turn_helix, Lux Regulon YPDSF_0545 SM00382 ATPases associated with a variety of cellular activities YPDSF_0545 SM01086 C-terminal, D2-small domain, of ClpB protein YPDSF_0556 SM00382 ATPases associated with a variety of cellular activities YPDSF_0562 SM00478 endonuclease III YPDSF_0562 SM00525 YPDSF_0562 YPDSF_0569 SM00729 Elongator protein 3, MiaB family, Radical SAM YPDSF_0571 SM01152 YPDSF_0571 YPDSF_0575 SM00382 ATPases associated with a variety of cellular activities YPDSF_0578 SM00732 Likely ribonuclease with RNase H fold. YPDSF_0584 SM00731 SprT homologues. YPDSF_0589 SM00861 Transketolase, pyrimidine binding domain YPDSF_0590 SM01321 YPDSF_0590 YPDSF_0591 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPDSF_0600 SM01321 YPDSF_0600 YPDSF_0604 SM01011 Aminopeptidase P, N-terminal domain YPDSF_0620 SM00448 cheY-homologous receiver domain YPDSF_0620 SM00862 Transcriptional regulatory protein, C terminal YPDSF_0621 SM00387 Histidine kinase-like ATPases YPDSF_0621 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_0627 SM00937 YPDSF_0627 YPDSF_0632 SM00530 Helix-turn-helix XRE-family like proteins YPDSF_0634 SM00530 Helix-turn-helix XRE-family like proteins YPDSF_0635 SM00778 Zinc-binding domain of primase-helicase YPDSF_0635 SM00885 D5 N terminal like YPDSF_0654 SM00382 ATPases associated with a variety of cellular activities YPDSF_0655 SM00382 ATPases associated with a variety of cellular activities YPDSF_0665 SM00354 helix_turn _helix lactose operon repressor YPDSF_0668 SM00354 helix_turn _helix lactose operon repressor YPDSF_0683 SM00420 helix_turn_helix, Deoxyribose operon repressor YPDSF_0683 SM01134 YPDSF_0683 YPDSF_0685 SM01321 YPDSF_0685 YPDSF_0687 SM00382 ATPases associated with a variety of cellular activities YPDSF_0689 SM00869 Autotransporter beta-domain YPDSF_0692 SM00947 Carbonic anhydrase YPDSF_0695 SM00382 ATPases associated with a variety of cellular activities YPDSF_0712 SM00382 ATPases associated with a variety of cellular activities YPDSF_0717 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YPDSF_0722 SM00873 B3/4 domain YPDSF_0722 SM00874 tRNA synthetase B5 domain YPDSF_0722 SM00896 Ferredoxin-fold anticodon binding domain YPDSF_0723 SM00411 bacterial (prokaryotic) histone like domain YPDSF_0727 SM00382 ATPases associated with a variety of cellular activities YPDSF_0746 SM00382 ATPases associated with a variety of cellular activities YPDSF_0751 SM00382 ATPases associated with a variety of cellular activities YPDSF_0753 SM01321 YPDSF_0753 YPDSF_0760 SM00354 helix_turn _helix lactose operon repressor YPDSF_0764 SM00479 YPDSF_0764 YPDSF_0772 SM00347 helix_turn_helix multiple antibiotic resistance protein YPDSF_0777 SM00363 S4 RNA-binding domain YPDSF_0784 SM00382 ATPases associated with a variety of cellular activities YPDSF_0785 SM00382 ATPases associated with a variety of cellular activities YPDSF_0789 SM01321 YPDSF_0789 YPDSF_0790 SM00382 ATPases associated with a variety of cellular activities YPDSF_0797 SM00953 YPDSF_0797 YPDSF_0799 SM00091 PAS domain YPDSF_0799 SM00382 ATPases associated with a variety of cellular activities YPDSF_0800 SM01321 YPDSF_0800 YPDSF_0801 SM00382 ATPases associated with a variety of cellular activities YPDSF_0804 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPDSF_0809 SM00422 helix_turn_helix, mercury resistance YPDSF_0812 SM00890 Domain of unknown function YPDSF_0824 SM00382 ATPases associated with a variety of cellular activities YPDSF_0824 SM00487 DEAD-like helicases superfamily YPDSF_0824 SM00490 helicase superfamily c-terminal domain YPDSF_0824 SM00847 Helicase associated domain (HA2) Add an annotation YPDSF_0825 SM00530 Helix-turn-helix XRE-family like proteins YPDSF_0826 SM00020 Trypsin-like serine protease YPDSF_0829 SM00867 YceI-like domain YPDSF_0833 SM01321 YPDSF_0833 YPDSF_0835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPDSF_0835 SM00387 Histidine kinase-like ATPases YPDSF_0835 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_0836 SM00448 cheY-homologous receiver domain YPDSF_0836 SM00862 Transcriptional regulatory protein, C terminal YPDSF_0840 SM01002 Alanine dehydrogenase/PNT, C-terminal domain YPDSF_0840 SM01003 Alanine dehydrogenase/PNT, N-terminal domain YPDSF_0843 SM00100 Cyclic nucleotide-monophosphate binding domain YPDSF_0843 SM00419 helix_turn_helix, cAMP Regulatory protein YPDSF_0845 SM00098 Alkaline phosphatase homologues YPDSF_0856 SM00382 ATPases associated with a variety of cellular activities YPDSF_0861 SM00354 helix_turn _helix lactose operon repressor YPDSF_0875 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_0878 SM00382 ATPases associated with a variety of cellular activities YPDSF_0882 SM00382 ATPases associated with a variety of cellular activities YPDSF_0892 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_0894 SM00900 YPDSF_0894 YPDSF_0896 SM00478 endonuclease III YPDSF_0896 SM00525 YPDSF_0896 YPDSF_0899 SM00357 Cold shock protein domain YPDSF_0899 SM00955 YPDSF_0899 YPDSF_0904 SM01007 Class II Aldolase and Adducin N-terminal domain YPDSF_0907 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family YPDSF_0909 SM00028 Tetratricopeptide repeats YPDSF_0911 SM00014 Acid phosphatase homologues YPDSF_0916 SM01321 YPDSF_0916 YPDSF_0917 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPDSF_0917 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPDSF_0917 SM00493 YPDSF_0917 YPDSF_0920 SM00822 YPDSF_0920 YPDSF_0922 SM00363 S4 RNA-binding domain YPDSF_0924 SM00481 DNA polymerase alpha chain like domain YPDSF_0932 SM00749 bacterial OsmY and nodulation domain YPDSF_0947 SM00155 Phospholipase D. Active site motifs. YPDSF_0950 SM00382 ATPases associated with a variety of cellular activities YPDSF_0951 SM00382 ATPases associated with a variety of cellular activities YPDSF_0958 SM00528 Domain in histone-like proteins of HNS family YPDSF_0960 SM00984 UDP binding domain YPDSF_0961 SM00448 cheY-homologous receiver domain YPDSF_0969 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPDSF_0969 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPDSF_0969 SM00493 YPDSF_0969 YPDSF_0973 SM00870 YPDSF_0973 YPDSF_0977 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPDSF_0980 SM00763 PrkA AAA domain YPDSF_0988 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPDSF_1000 SM00060 Fibronectin type 3 domain YPDSF_1003 SM01040 BRO family, N-terminal domain YPDSF_1006 SM00232 JAB/MPN domain YPDSF_1008 SM01321 YPDSF_1008 YPDSF_1009 SM01321 YPDSF_1009 YPDSF_1013 SM00635 Bacterial Ig-like domain 2 YPDSF_1019 SM00635 Bacterial Ig-like domain 2 YPDSF_1031 SM01040 BRO family, N-terminal domain YPDSF_1036 SM00382 ATPases associated with a variety of cellular activities YPDSF_1046 SM00341 Helicase and RNase D C-terminal YPDSF_1046 SM00474 3'-5' exonuclease YPDSF_1051 SM00487 DEAD-like helicases superfamily YPDSF_1051 SM00491 YPDSF_1051 YPDSF_1060 SM00257 Lysin motif YPDSF_1062 SM00382 ATPases associated with a variety of cellular activities YPDSF_1064 SM00382 ATPases associated with a variety of cellular activities YPDSF_1065 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPDSF_1077 SM00836 DALR anticodon binding domain YPDSF_1077 SM01016 Arginyl tRNA synthetase N terminal dom YPDSF_1078 SM00912 haemagglutination activity domain YPDSF_1086 SM00481 DNA polymerase alpha chain like domain YPDSF_1090 SM01321 YPDSF_1090 YPDSF_1101 SM00937 YPDSF_1101 YPDSF_1106 SM01400 YPDSF_1106 YPDSF_1112 SM00450 Rhodanese Homology Domain YPDSF_1119 SM00448 cheY-homologous receiver domain YPDSF_1121 SM00382 ATPases associated with a variety of cellular activities YPDSF_1122 SM00862 Transcriptional regulatory protein, C terminal YPDSF_1123 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPDSF_1123 SM00387 Histidine kinase-like ATPases YPDSF_1123 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_1133 SM00671 Sel1-like repeats. YPDSF_1134 SM00671 Sel1-like repeats. YPDSF_1150 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPDSF_1150 SM00866 YPDSF_1150 YPDSF_1153 SM00382 ATPases associated with a variety of cellular activities YPDSF_1162 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPDSF_1163 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPDSF_1163 SM00387 Histidine kinase-like ATPases YPDSF_1176 SM00382 ATPases associated with a variety of cellular activities YPDSF_1186 SM00420 helix_turn_helix, Deoxyribose operon repressor YPDSF_1186 SM01134 YPDSF_1186 YPDSF_1199 SM00421 helix_turn_helix, Lux Regulon YPDSF_1199 SM00448 cheY-homologous receiver domain YPDSF_1200 SM00062 Bacterial periplasmic substrate-binding proteins YPDSF_1200 SM00387 Histidine kinase-like ATPases YPDSF_1200 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_1200 SM00448 cheY-homologous receiver domain YPDSF_1211 SM00382 ATPases associated with a variety of cellular activities YPDSF_1212 SM00382 ATPases associated with a variety of cellular activities YPDSF_1213 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_1214 SM00823 Phosphopantetheine attachment site YPDSF_1215 SM00822 YPDSF_1215 YPDSF_1215 SM00823 Phosphopantetheine attachment site YPDSF_1215 SM00824 Thioesterase YPDSF_1215 SM00825 Beta-ketoacyl synthase YPDSF_1215 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPDSF_1226 SM00382 ATPases associated with a variety of cellular activities YPDSF_1231 SM00382 ATPases associated with a variety of cellular activities YPDSF_1236 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPDSF_1236 SM00866 YPDSF_1236 YPDSF_1260 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPDSF_1260 SM00465 GIY-YIG type nucleases (URI domain) YPDSF_1261 SM00421 helix_turn_helix, Lux Regulon YPDSF_1261 SM00448 cheY-homologous receiver domain YPDSF_1277 SM00382 ATPases associated with a variety of cellular activities YPDSF_1288 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_1289 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPDSF_1290 SM00478 endonuclease III YPDSF_1297 SM00382 ATPases associated with a variety of cellular activities YPDSF_1310 SM00382 ATPases associated with a variety of cellular activities YPDSF_1313 SM01007 Class II Aldolase and Adducin N-terminal domain YPDSF_1317 SM00047 Lysozyme subfamily 2 YPDSF_1326 SM00858 YPDSF_1326 YPDSF_1329 SM00634 Bacterial Ig-like domain (group 1) YPDSF_1330 SM01321 YPDSF_1330 YPDSF_1345 SM01022 YPDSF_1345 YPDSF_1347 SM00487 DEAD-like helicases superfamily YPDSF_1347 SM00490 helicase superfamily c-terminal domain YPDSF_1353 SM00903 Flavin reductase like domain YPDSF_1363 SM00347 helix_turn_helix multiple antibiotic resistance protein YPDSF_1373 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPDSF_1373 SM00091 PAS domain YPDSF_1373 SM00267 diguanylate cyclase YPDSF_1377 SM00357 Cold shock protein domain YPDSF_1385 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_1387 SM00382 ATPases associated with a variety of cellular activities YPDSF_1388 SM01321 YPDSF_1388 YPDSF_1389 SM00090 RIO-like kinase YPDSF_1392 SM00354 helix_turn _helix lactose operon repressor YPDSF_1400 SM00421 helix_turn_helix, Lux Regulon YPDSF_1400 SM00448 cheY-homologous receiver domain YPDSF_1408 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPDSF_1414 SM00634 Bacterial Ig-like domain (group 1) YPDSF_1423 SM00382 ATPases associated with a variety of cellular activities YPDSF_1435 SM01350 YPDSF_1435 YPDSF_1443 SM00382 ATPases associated with a variety of cellular activities YPDSF_1445 SM01006 Siderophore biosynthesis protein domain YPDSF_1449 SM01091 Transporter associated domain YPDSF_1455 SM01321 YPDSF_1455 YPDSF_1463 SM00919 Malic enzyme, NAD binding domain YPDSF_1463 SM01274 YPDSF_1463 YPDSF_1467 SM00382 ATPases associated with a variety of cellular activities YPDSF_1469 SM00382 ATPases associated with a variety of cellular activities YPDSF_1475 SM00829 Enoylreductase YPDSF_1479 SM00382 ATPases associated with a variety of cellular activities YPDSF_1481 SM00852 Probable molybdopterin binding domain YPDSF_1484 SM00382 ATPases associated with a variety of cellular activities YPDSF_1504 SM00382 ATPases associated with a variety of cellular activities YPDSF_1504 SM01086 C-terminal, D2-small domain, of ClpB protein YPDSF_1512 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPDSF_1519 SM00825 Beta-ketoacyl synthase YPDSF_1529 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YPDSF_1530 SM00992 Hemimethylated DNA-binding protein YccV like YPDSF_1531 SM00881 CoA binding domain YPDSF_1533 SM00851 MGS-like domain YPDSF_1540 SM01321 YPDSF_1540 YPDSF_1546 SM00382 ATPases associated with a variety of cellular activities YPDSF_1547 SM00825 Beta-ketoacyl synthase YPDSF_1548 SM01321 YPDSF_1548 YPDSF_1553 SM00358 Double-stranded RNA binding motif YPDSF_1553 SM00535 Ribonuclease III family YPDSF_1563 SM00487 DEAD-like helicases superfamily YPDSF_1563 SM00490 helicase superfamily c-terminal domain YPDSF_1564 SM00248 ankyrin repeats YPDSF_1567 SM00986 Uracil DNA glycosylase superfamily YPDSF_1567 SM00987 UreE urease accessory protein, C-terminal domain YPDSF_1572 SM00797 Allophanate hydrolase subunit 2 YPDSF_1573 SM00796 Allophanate hydrolase subunit 1 YPDSF_1585 SM00448 cheY-homologous receiver domain YPDSF_1585 SM00862 Transcriptional regulatory protein, C terminal YPDSF_1593 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_1608 SM00988 UreE urease accessory protein, N-terminal domain YPDSF_1612 SM00382 ATPases associated with a variety of cellular activities YPDSF_1613 SM00382 ATPases associated with a variety of cellular activities YPDSF_1617 SM00357 Cold shock protein domain YPDSF_1625 SM00382 ATPases associated with a variety of cellular activities YPDSF_1630 SM00479 YPDSF_1630 YPDSF_1633 SM00849 Metallo-beta-lactamase superfamily YPDSF_1634 SM00257 Lysin motif YPDSF_1638 SM00382 ATPases associated with a variety of cellular activities YPDSF_1638 SM00930 YPDSF_1638 YPDSF_1646 SM01322 YPDSF_1646 YPDSF_1650 SM00977 TilS substrate C-terminal domain YPDSF_1653 SM00481 DNA polymerase alpha chain like domain YPDSF_1659 SM00935 Outer membrane protein (OmpH-like) YPDSF_1661 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPDSF_1671 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPDSF_1677 SM01321 YPDSF_1677 YPDSF_1681 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPDSF_1681 SM00475 5'-3' exonuclease YPDSF_1688 SM00925 MltA specific insert domain YPDSF_1689 SM00646 YPDSF_1689 YPDSF_1692 SM00382 ATPases associated with a variety of cellular activities YPDSF_1704 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. YPDSF_1706 SM00927 DNA mismatch repair enzyme MutH YPDSF_1710 SM00563 Phosphate acyltransferases YPDSF_1712 SM00354 helix_turn _helix lactose operon repressor YPDSF_1717 SM00849 Metallo-beta-lactamase superfamily YPDSF_1719 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPDSF_1719 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPDSF_1719 SM00319 Homologues of the ligand binding domain of Tar YPDSF_1728 SM00382 ATPases associated with a variety of cellular activities YPDSF_1733 SM00644 YPDSF_1733 YPDSF_1734 SM00346 helix_turn_helix isocitrate lyase regulation YPDSF_1743 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPDSF_1743 SM00245 tail specific protease YPDSF_1744 SM00945 ProQ/FINO family YPDSF_1748 SM00972 Spore Coat Protein U domain YPDSF_1749 SM00972 Spore Coat Protein U domain YPDSF_1750 SM00972 Spore Coat Protein U domain YPDSF_1753 SM00972 Spore Coat Protein U domain YPDSF_1755 SM01022 YPDSF_1755 YPDSF_1758 SM00382 ATPases associated with a variety of cellular activities YPDSF_1761 SM01005 Alanine racemase, C-terminal domain YPDSF_1765 SM00644 YPDSF_1765 YPDSF_1768 SM00448 cheY-homologous receiver domain YPDSF_1769 SM00448 cheY-homologous receiver domain YPDSF_1770 SM00138 Methyltransferase, chemotaxis proteins YPDSF_1771 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPDSF_1771 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPDSF_1771 SM00319 Homologues of the ligand binding domain of Tar YPDSF_1772 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPDSF_1772 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPDSF_1772 SM00319 Homologues of the ligand binding domain of Tar YPDSF_1775 SM00869 Autotransporter beta-domain YPDSF_1780 SM00260 Two component signalling adaptor domain YPDSF_1781 SM00073 Histidine Phosphotransfer domain YPDSF_1781 SM00260 Two component signalling adaptor domain YPDSF_1781 SM00387 Histidine kinase-like ATPases YPDSF_1781 SM01231 YPDSF_1781 YPDSF_1786 SM00831 Cation transporter/ATPase, N-terminus YPDSF_1788 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPDSF_1788 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPDSF_1788 SM00319 Homologues of the ligand binding domain of Tar YPDSF_1791 SM00357 Cold shock protein domain YPDSF_1792 SM01038 Beta galactosidase small chain YPDSF_1793 SM00829 Enoylreductase YPDSF_1796 SM00344 helix_turn_helix ASNC type YPDSF_1804 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPDSF_1804 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPDSF_1806 SM00354 helix_turn _helix lactose operon repressor YPDSF_1807 SM01329 YPDSF_1807 YPDSF_1814 SM00448 cheY-homologous receiver domain YPDSF_1814 SM00862 Transcriptional regulatory protein, C terminal YPDSF_1815 SM00387 Histidine kinase-like ATPases YPDSF_1815 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_1816 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. YPDSF_1822 SM00382 ATPases associated with a variety of cellular activities YPDSF_1824 SM00487 DEAD-like helicases superfamily YPDSF_1824 SM00490 helicase superfamily c-terminal domain YPDSF_1824 SM00982 YPDSF_1824 YPDSF_1824 SM01058 CarD-like/TRCF domain YPDSF_1838 SM01321 YPDSF_1838 YPDSF_1845 SM01321 YPDSF_1845 YPDSF_1846 SM00825 Beta-ketoacyl synthase YPDSF_1848 SM00822 YPDSF_1848 YPDSF_1849 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPDSF_1855 SM00363 S4 RNA-binding domain YPDSF_1856 SM00316 Ribosomal protein S1-like RNA-binding domain YPDSF_1864 SM00421 helix_turn_helix, Lux Regulon YPDSF_1866 SM00450 Rhodanese Homology Domain YPDSF_1872 SM00421 helix_turn_helix, Lux Regulon YPDSF_1891 SM00354 helix_turn _helix lactose operon repressor YPDSF_1893 SM00382 ATPases associated with a variety of cellular activities YPDSF_1902 SM00912 haemagglutination activity domain YPDSF_1907 SM01329 YPDSF_1907 YPDSF_1909 SM00354 helix_turn _helix lactose operon repressor YPDSF_1914 SM00829 Enoylreductase YPDSF_1924 SM00062 Bacterial periplasmic substrate-binding proteins YPDSF_1924 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPDSF_1926 SM00382 ATPases associated with a variety of cellular activities YPDSF_1927 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPDSF_1927 SM00091 PAS domain YPDSF_1927 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPDSF_1934 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPDSF_1947 SM00354 helix_turn _helix lactose operon repressor YPDSF_1960 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPDSF_1960 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPDSF_1961 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPDSF_1968 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPDSF_1975 SM00354 helix_turn _helix lactose operon repressor YPDSF_1982 SM00052 Putative diguanylate phosphodiesterase YPDSF_1984 SM00382 ATPases associated with a variety of cellular activities YPDSF_1987 SM00062 Bacterial periplasmic substrate-binding proteins YPDSF_1996 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPDSF_1998 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_2003 SM00825 Beta-ketoacyl synthase YPDSF_2011 SM00463 Small MutS-related domain YPDSF_2012 SM00855 Phosphoglycerate mutase family YPDSF_2026 SM00382 ATPases associated with a variety of cellular activities YPDSF_2040 SM00382 ATPases associated with a variety of cellular activities YPDSF_2054 SM00382 ATPases associated with a variety of cellular activities YPDSF_2054 SM01086 C-terminal, D2-small domain, of ClpB protein YPDSF_2064 SM00421 helix_turn_helix, Lux Regulon YPDSF_2068 SM00382 ATPases associated with a variety of cellular activities YPDSF_2072 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPDSF_2093 SM01321 YPDSF_2093 YPDSF_2097 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPDSF_2097 SM00292 breast cancer carboxy-terminal domain YPDSF_2097 SM00532 Ligase N family YPDSF_2098 SM00771 ZipA, C-terminal domain (FtsZ-binding) YPDSF_2104 SM01321 YPDSF_2104 YPDSF_2105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPDSF_2105 SM00387 Histidine kinase-like ATPases YPDSF_2105 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_2106 SM00448 cheY-homologous receiver domain YPDSF_2106 SM00862 Transcriptional regulatory protein, C terminal YPDSF_2108 SM00382 ATPases associated with a variety of cellular activities YPDSF_2109 SM00450 Rhodanese Homology Domain YPDSF_2114 SM00327 von Willebrand factor (vWF) type A domain YPDSF_2115 SM00387 Histidine kinase-like ATPases YPDSF_2115 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_2116 SM00448 cheY-homologous receiver domain YPDSF_2116 SM00862 Transcriptional regulatory protein, C terminal YPDSF_2119 SM00382 ATPases associated with a variety of cellular activities YPDSF_2127 SM00364 Leucine-rich repeats, bacterial type YPDSF_2127 SM00369 Leucine-rich repeats, typical (most populated) subfamily YPDSF_2129 SM01130 YPDSF_2129 YPDSF_2134 SM00869 Autotransporter beta-domain YPDSF_2139 SM00919 Malic enzyme, NAD binding domain YPDSF_2139 SM01274 YPDSF_2139 YPDSF_2143 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPDSF_2146 SM00421 helix_turn_helix, Lux Regulon YPDSF_2146 SM00448 cheY-homologous receiver domain YPDSF_2153 SM00382 ATPases associated with a variety of cellular activities YPDSF_2165 SM01321 YPDSF_2165 YPDSF_2167 SM01130 YPDSF_2167 YPDSF_2176 SM01321 YPDSF_2176 YPDSF_2183 SM00382 ATPases associated with a variety of cellular activities YPDSF_2189 SM00924 MgtE intracellular N domain YPDSF_2195 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPDSF_2196 SM00382 ATPases associated with a variety of cellular activities YPDSF_2202 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPDSF_2202 SM00387 Histidine kinase-like ATPases YPDSF_2202 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_2203 SM00448 cheY-homologous receiver domain YPDSF_2203 SM00862 Transcriptional regulatory protein, C terminal YPDSF_2206 SM00046 Diacylglycerol kinase catalytic domain (presumed) YPDSF_2214 SM01321 YPDSF_2214 YPDSF_2216 SM00116 Domain in cystathionine beta-synthase and other proteins. YPDSF_2216 SM01240 YPDSF_2216 YPDSF_2221 SM00564 beta-propeller repeat YPDSF_2225 SM00530 Helix-turn-helix XRE-family like proteins YPDSF_2226 SM00028 Tetratricopeptide repeats YPDSF_2228 SM00562 YPDSF_2228 YPDSF_2229 SM00247 Beta/gamma crystallins YPDSF_2230 SM00869 Autotransporter beta-domain YPDSF_2238 SM00271 DnaJ molecular chaperone homology domain YPDSF_2254 SM00382 ATPases associated with a variety of cellular activities YPDSF_2256 SM00938 Nitrogen regulatory protein P-II YPDSF_2258 SM00382 ATPases associated with a variety of cellular activities YPDSF_2258 SM00448 cheY-homologous receiver domain YPDSF_2260 SM00387 Histidine kinase-like ATPases YPDSF_2260 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_2261 SM01321 YPDSF_2261 YPDSF_2264 SM01211 YPDSF_2264 YPDSF_2265 SM00062 Bacterial periplasmic substrate-binding proteins YPDSF_2271 SM01321 YPDSF_2271 YPDSF_2276 SM00382 ATPases associated with a variety of cellular activities YPDSF_2277 SM00981 YPDSF_2277 YPDSF_2286 SM00849 Metallo-beta-lactamase superfamily YPDSF_2289 SM01321 YPDSF_2289 YPDSF_2297 SM00357 Cold shock protein domain YPDSF_2298 SM01150 YPDSF_2298 YPDSF_2300 SM00382 ATPases associated with a variety of cellular activities YPDSF_2301 SM00849 Metallo-beta-lactamase superfamily YPDSF_2302 SM00411 bacterial (prokaryotic) histone like domain YPDSF_2303 SM00316 Ribosomal protein S1-like RNA-binding domain YPDSF_2309 SM00870 YPDSF_2309 YPDSF_2317 SM00382 ATPases associated with a variety of cellular activities YPDSF_2319 SM00843 YPDSF_2319 YPDSF_2320 SM00344 helix_turn_helix ASNC type YPDSF_2322 SM00382 ATPases associated with a variety of cellular activities YPDSF_2323 SM00382 ATPases associated with a variety of cellular activities YPDSF_2325 SM00316 Ribosomal protein S1-like RNA-binding domain YPDSF_2326 SM01321 YPDSF_2326 YPDSF_2327 SM00382 ATPases associated with a variety of cellular activities YPDSF_2327 SM01086 C-terminal, D2-small domain, of ClpB protein YPDSF_2330 SM00357 Cold shock protein domain YPDSF_2331 SM00382 ATPases associated with a variety of cellular activities YPDSF_2345 SM00830 Chorismate mutase type II YPDSF_2346 SM00382 ATPases associated with a variety of cellular activities YPDSF_2347 SM00062 Bacterial periplasmic substrate-binding proteins YPDSF_2347 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPDSF_2354 SM00382 ATPases associated with a variety of cellular activities YPDSF_2357 SM00244 prohibitin homologues YPDSF_2359 SM00062 Bacterial periplasmic substrate-binding proteins YPDSF_2359 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPDSF_2364 SM00382 ATPases associated with a variety of cellular activities YPDSF_2372 SM00014 Acid phosphatase homologues YPDSF_2373 SM01133 YPDSF_2373 YPDSF_2374 SM00420 helix_turn_helix, Deoxyribose operon repressor YPDSF_2374 SM01134 YPDSF_2374 YPDSF_2376 SM00936 Penicillin-binding protein 5, C-terminal domain YPDSF_2378 SM00382 ATPases associated with a variety of cellular activities YPDSF_2378 SM00930 YPDSF_2378 YPDSF_2384 SM00382 ATPases associated with a variety of cellular activities YPDSF_2387 SM01321 YPDSF_2387 YPDSF_2391 SM00518 AP endonuclease family 2 YPDSF_2396 SM00862 Transcriptional regulatory protein, C terminal YPDSF_2402 SM00382 ATPases associated with a variety of cellular activities YPDSF_2412 SM00841 Elongation factor P, C-terminal YPDSF_2412 SM01185 YPDSF_2412 YPDSF_2415 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPDSF_2415 SM00895 YPDSF_2415 YPDSF_2417 SM00833 Cobalamin synthesis protein cobW C-terminal domain YPDSF_2418 SM00014 Acid phosphatase homologues YPDSF_2420 SM00052 Putative diguanylate phosphodiesterase YPDSF_2424 SM00382 ATPases associated with a variety of cellular activities YPDSF_2428 SM00363 S4 RNA-binding domain YPDSF_2429 SM00487 DEAD-like helicases superfamily YPDSF_2429 SM00490 helicase superfamily c-terminal domain YPDSF_2431 SM01321 YPDSF_2431 YPDSF_2458 SM00420 helix_turn_helix, Deoxyribose operon repressor YPDSF_2458 SM01134 YPDSF_2458 YPDSF_2459 SM01007 Class II Aldolase and Adducin N-terminal domain YPDSF_2462 SM00530 Helix-turn-helix XRE-family like proteins YPDSF_2466 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPDSF_2466 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPDSF_2475 SM00421 helix_turn_helix, Lux Regulon YPDSF_2475 SM00448 cheY-homologous receiver domain YPDSF_2476 SM00387 Histidine kinase-like ATPases YPDSF_2476 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_2476 SM00448 cheY-homologous receiver domain YPDSF_2477 SM00434 DNA Topoisomerase IV YPDSF_2483 SM00852 Probable molybdopterin binding domain YPDSF_2486 SM01060 YPDSF_2486 YPDSF_2487 SM00487 DEAD-like helicases superfamily YPDSF_2487 SM00488 YPDSF_2487 YPDSF_2487 SM00491 YPDSF_2487 YPDSF_2498 SM00382 ATPases associated with a variety of cellular activities YPDSF_2501 SM00450 Rhodanese Homology Domain YPDSF_2504 SM00382 ATPases associated with a variety of cellular activities YPDSF_2513 SM00382 ATPases associated with a variety of cellular activities YPDSF_2517 SM00507 HNH nucleases YPDSF_2518 SM01118 YPDSF_2518 YPDSF_2524 SM01321 YPDSF_2524 YPDSF_2533 SM01321 YPDSF_2533 YPDSF_2538 SM00729 Elongator protein 3, MiaB family, Radical SAM YPDSF_2541 SM00487 DEAD-like helicases superfamily YPDSF_2541 SM00490 helicase superfamily c-terminal domain YPDSF_2542 SM00382 ATPases associated with a variety of cellular activities YPDSF_2546 SM00729 Elongator protein 3, MiaB family, Radical SAM YPDSF_2546 SM00876 Biotin and Thiamin Synthesis associated domain YPDSF_2550 SM00382 ATPases associated with a variety of cellular activities YPDSF_2555 SM00382 ATPases associated with a variety of cellular activities YPDSF_2564 SM00855 Phosphoglycerate mutase family YPDSF_2580 SM01321 YPDSF_2580 YPDSF_2581 SM00881 CoA binding domain YPDSF_2584 SM00861 Transketolase, pyrimidine binding domain YPDSF_2597 SM01321 YPDSF_2597 YPDSF_2606 SM00778 Zinc-binding domain of primase-helicase YPDSF_2612 SM00382 ATPases associated with a variety of cellular activities YPDSF_2622 SM01081 Putative carbohydrate binding domain YPDSF_2632 SM00729 Elongator protein 3, MiaB family, Radical SAM YPDSF_2636 SM00116 Domain in cystathionine beta-synthase and other proteins. YPDSF_2636 SM01091 Transporter associated domain YPDSF_2638 SM00062 Bacterial periplasmic substrate-binding proteins YPDSF_2641 SM00382 ATPases associated with a variety of cellular activities YPDSF_2652 SM00936 Penicillin-binding protein 5, C-terminal domain YPDSF_2655 SM00729 Elongator protein 3, MiaB family, Radical SAM YPDSF_2659 SM00357 Cold shock protein domain YPDSF_2661 SM00421 helix_turn_helix, Lux Regulon YPDSF_2666 SM00382 ATPases associated with a variety of cellular activities YPDSF_2672 SM00382 ATPases associated with a variety of cellular activities YPDSF_2679 SM01359 YPDSF_2679 YPDSF_2679 SM01360 YPDSF_2679 YPDSF_2686 SM00869 Autotransporter beta-domain YPDSF_2692 SM01217 YPDSF_2692 YPDSF_2699 SM00382 ATPases associated with a variety of cellular activities YPDSF_2701 SM00195 Dual specificity phosphatase, catalytic domain YPDSF_2701 SM00404 Protein tyrosine phosphatase, catalytic domain motif YPDSF_2703 SM00563 Phosphate acyltransferases YPDSF_2710 SM01321 YPDSF_2710 YPDSF_2711 SM00840 YPDSF_2711 YPDSF_2714 SM01001 AIR carboxylase YPDSF_2717 SM00382 ATPases associated with a variety of cellular activities YPDSF_2719 SM00822 YPDSF_2719 YPDSF_2721 SM00244 prohibitin homologues YPDSF_2723 SM00422 helix_turn_helix, mercury resistance YPDSF_2755 SM00387 Histidine kinase-like ATPases YPDSF_2757 SM00493 YPDSF_2757 YPDSF_2759 SM00382 ATPases associated with a variety of cellular activities YPDSF_2778 SM00938 Nitrogen regulatory protein P-II YPDSF_2779 SM00382 ATPases associated with a variety of cellular activities YPDSF_2780 SM00382 ATPases associated with a variety of cellular activities YPDSF_2781 SM00344 helix_turn_helix ASNC type YPDSF_2789 SM01321 YPDSF_2789 YPDSF_2790 SM00411 bacterial (prokaryotic) histone like domain YPDSF_2791 SM00382 ATPases associated with a variety of cellular activities YPDSF_2791 SM00464 Found in ATP-dependent protease La (LON) YPDSF_2792 SM00382 ATPases associated with a variety of cellular activities YPDSF_2792 SM00994 ClpX C4-type zinc finger YPDSF_2792 SM01086 C-terminal, D2-small domain, of ClpB protein YPDSF_2808 SM00981 YPDSF_2808 YPDSF_2812 SM00861 Transketolase, pyrimidine binding domain YPDSF_2813 SM01321 YPDSF_2813 YPDSF_2822 SM01321 YPDSF_2822 YPDSF_2825 SM01323 YPDSF_2825 YPDSF_2833 SM00642 Alpha-amylase domain YPDSF_2837 SM00091 PAS domain YPDSF_2837 SM00387 Histidine kinase-like ATPases YPDSF_2837 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_2838 SM00448 cheY-homologous receiver domain YPDSF_2838 SM00862 Transcriptional regulatory protein, C terminal YPDSF_2851 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YPDSF_2855 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins YPDSF_2865 SM00900 YPDSF_2865 YPDSF_2873 SM01321 YPDSF_2873 YPDSF_2876 SM00710 Parallel beta-helix repeats YPDSF_2876 SM00912 haemagglutination activity domain YPDSF_2882 SM01007 Class II Aldolase and Adducin N-terminal domain YPDSF_2888 SM00382 ATPases associated with a variety of cellular activities YPDSF_2890 SM00382 ATPases associated with a variety of cellular activities YPDSF_2893 SM00062 Bacterial periplasmic substrate-binding proteins YPDSF_2902 SM00347 helix_turn_helix multiple antibiotic resistance protein YPDSF_2905 SM00967 RNA 2'-O ribose methyltransferase substrate binding YPDSF_2907 SM01144 YPDSF_2907 YPDSF_2908 SM00881 CoA binding domain YPDSF_2909 SM00155 Phospholipase D. Active site motifs. YPDSF_2911 SM00382 ATPases associated with a variety of cellular activities YPDSF_2911 SM01086 C-terminal, D2-small domain, of ClpB protein YPDSF_2913 SM00363 S4 RNA-binding domain YPDSF_2916 SM01321 YPDSF_2916 YPDSF_2917 SM00830 Chorismate mutase type II YPDSF_2918 SM00830 Chorismate mutase type II YPDSF_2920 SM00382 ATPases associated with a variety of cellular activities YPDSF_2922 SM01321 YPDSF_2922 YPDSF_2926 SM01240 YPDSF_2926 YPDSF_2931 SM00644 YPDSF_2931 YPDSF_2934 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPDSF_2934 SM00895 YPDSF_2934 YPDSF_2939 SM01321 YPDSF_2939 YPDSF_2948 SM00947 Carbonic anhydrase YPDSF_2949 SM00382 ATPases associated with a variety of cellular activities YPDSF_2962 SM00487 DEAD-like helicases superfamily YPDSF_2962 SM00490 helicase superfamily c-terminal domain YPDSF_2962 SM00847 Helicase associated domain (HA2) Add an annotation YPDSF_2975 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPDSF_2976 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPDSF_2977 SM00073 Histidine Phosphotransfer domain YPDSF_2977 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPDSF_2977 SM00387 Histidine kinase-like ATPases YPDSF_2977 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_2977 SM00448 cheY-homologous receiver domain YPDSF_2980 SM00954 Region found in RelA / SpoT proteins YPDSF_2983 SM01192 YPDSF_2983 YPDSF_2983 SM01193 YPDSF_2983 YPDSF_3004 SM00257 Lysin motif YPDSF_3006 SM00533 DNA-binding domain of DNA mismatch repair MUTS family YPDSF_3006 SM00534 ATPase domain of DNA mismatch repair MUTS family YPDSF_3009 SM00829 Enoylreductase YPDSF_3012 SM01120 YPDSF_3012 YPDSF_3015 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor YPDSF_3017 SM00062 Bacterial periplasmic substrate-binding proteins YPDSF_3018 SM01235 YPDSF_3018 YPDSF_3031 SM00382 ATPases associated with a variety of cellular activities YPDSF_3033 SM00420 helix_turn_helix, Deoxyribose operon repressor YPDSF_3033 SM01134 YPDSF_3033 YPDSF_3034 SM01007 Class II Aldolase and Adducin N-terminal domain YPDSF_3035 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPDSF_3044 SM00382 ATPases associated with a variety of cellular activities YPDSF_3047 SM00861 Transketolase, pyrimidine binding domain YPDSF_3054 SM00382 ATPases associated with a variety of cellular activities YPDSF_3056 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YPDSF_3062 SM01091 Transporter associated domain YPDSF_3064 SM00382 ATPases associated with a variety of cellular activities YPDSF_3064 SM00962 SRP54-type protein, GTPase domain YPDSF_3064 SM00963 SRP54-type protein, helical bundle domain YPDSF_3073 SM00448 cheY-homologous receiver domain YPDSF_3073 SM00850 LytTr DNA-binding domain YPDSF_3076 SM00382 ATPases associated with a variety of cellular activities YPDSF_3078 SM00957 SecA DEAD-like domain YPDSF_3078 SM00958 SecA preprotein cross-linking domain YPDSF_3082 SM00864 Tubulin/FtsZ family, GTPase domain YPDSF_3082 SM00865 Tubulin/FtsZ family, C-terminal domain YPDSF_3083 SM00842 Cell division protein FtsA YPDSF_3098 SM01321 YPDSF_3098 YPDSF_3099 SM00354 helix_turn _helix lactose operon repressor YPDSF_3100 SM01321 YPDSF_3100 YPDSF_3106 SM00917 LeuA allosteric (dimerisation) domain YPDSF_3107 SM01329 YPDSF_3107 YPDSF_3114 SM00382 ATPases associated with a variety of cellular activities YPDSF_3116 SM00486 DNA polymerase type-B family YPDSF_3117 SM00487 DEAD-like helicases superfamily YPDSF_3117 SM00490 helicase superfamily c-terminal domain YPDSF_3128 SM00382 ATPases associated with a variety of cellular activities YPDSF_3128 SM01086 C-terminal, D2-small domain, of ClpB protein YPDSF_3138 SM00271 DnaJ molecular chaperone homology domain YPDSF_3142 SM00650 Ribosomal RNA adenine dimethylases YPDSF_3151 SM00851 MGS-like domain YPDSF_3151 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPDSF_3152 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain YPDSF_3158 SM00904 Riboflavin kinase YPDSF_3162 SM00271 DnaJ molecular chaperone homology domain YPDSF_3167 SM00852 Probable molybdopterin binding domain YPDSF_3176 SM00448 cheY-homologous receiver domain YPDSF_3176 SM00862 Transcriptional regulatory protein, C terminal YPDSF_3178 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_3178 SM00871 Bacterial transcription activator, effector binding domain YPDSF_3179 SM00855 Phosphoglycerate mutase family YPDSF_3183 SM00831 Cation transporter/ATPase, N-terminus YPDSF_3185 SM00267 diguanylate cyclase YPDSF_3187 SM00382 ATPases associated with a variety of cellular activities YPDSF_3190 SM00530 Helix-turn-helix XRE-family like proteins YPDSF_3191 SM00382 ATPases associated with a variety of cellular activities YPDSF_3196 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain YPDSF_3197 SM01133 YPDSF_3197 YPDSF_3202 SM00749 bacterial OsmY and nodulation domain YPDSF_3207 SM00267 diguanylate cyclase YPDSF_3219 SM00382 ATPases associated with a variety of cellular activities YPDSF_3223 SM01133 YPDSF_3223 YPDSF_3230 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_3243 SM00382 ATPases associated with a variety of cellular activities YPDSF_3245 SM00382 ATPases associated with a variety of cellular activities YPDSF_3262 SM00382 ATPases associated with a variety of cellular activities YPDSF_3263 SM00382 ATPases associated with a variety of cellular activities YPDSF_3266 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPDSF_3266 SM00866 YPDSF_3266 YPDSF_3271 SM00382 ATPases associated with a variety of cellular activities YPDSF_3272 SM00382 ATPases associated with a variety of cellular activities YPDSF_3274 SM00072 Guanylate kinase homologues. YPDSF_3275 SM00849 Metallo-beta-lactamase superfamily YPDSF_3276 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPDSF_3279 SM00382 ATPases associated with a variety of cellular activities YPDSF_3295 SM00530 Helix-turn-helix XRE-family like proteins YPDSF_3297 SM00487 DEAD-like helicases superfamily YPDSF_3297 SM00490 helicase superfamily c-terminal domain YPDSF_3298 SM00028 Tetratricopeptide repeats YPDSF_3299 SM00316 Ribosomal protein S1-like RNA-binding domain YPDSF_3299 SM00322 K homology RNA-binding domain YPDSF_3306 SM00642 Alpha-amylase domain YPDSF_3307 SM00642 Alpha-amylase domain YPDSF_3309 SM00257 Lysin motif YPDSF_3309 SM00634 Bacterial Ig-like domain (group 1) YPDSF_3313 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPDSF_3320 SM00354 helix_turn _helix lactose operon repressor YPDSF_3322 SM00448 cheY-homologous receiver domain YPDSF_3322 SM00862 Transcriptional regulatory protein, C terminal YPDSF_3328 SM00382 ATPases associated with a variety of cellular activities YPDSF_3333 SM01321 YPDSF_3333 YPDSF_3336 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPDSF_3337 SM00235 Zinc-dependent metalloprotease YPDSF_3350 SM00869 Autotransporter beta-domain YPDSF_3354 SM00052 Putative diguanylate phosphodiesterase YPDSF_3363 SM00052 Putative diguanylate phosphodiesterase YPDSF_3363 SM00267 diguanylate cyclase YPDSF_3365 SM00382 ATPases associated with a variety of cellular activities YPDSF_3366 SM00382 ATPases associated with a variety of cellular activities YPDSF_3371 SM00912 haemagglutination activity domain YPDSF_3373 SM00387 Histidine kinase-like ATPases YPDSF_3374 SM00421 helix_turn_helix, Lux Regulon YPDSF_3374 SM00448 cheY-homologous receiver domain YPDSF_3376 SM00382 ATPases associated with a variety of cellular activities YPDSF_3390 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YPDSF_3390 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPDSF_3391 SM01004 Delta-aminolevulinic acid dehydratase YPDSF_3410 SM00382 ATPases associated with a variety of cellular activities YPDSF_3421 SM00382 ATPases associated with a variety of cellular activities YPDSF_3422 SM00382 ATPases associated with a variety of cellular activities YPDSF_3427 SM01321 YPDSF_3427 YPDSF_3430 SM00382 ATPases associated with a variety of cellular activities YPDSF_3431 SM00382 ATPases associated with a variety of cellular activities YPDSF_3431 SM00962 SRP54-type protein, GTPase domain YPDSF_3431 SM00963 SRP54-type protein, helical bundle domain YPDSF_3450 SM00341 Helicase and RNase D C-terminal YPDSF_3450 SM00487 DEAD-like helicases superfamily YPDSF_3450 SM00490 helicase superfamily c-terminal domain YPDSF_3450 SM00956 YPDSF_3450 YPDSF_3464 SM01219 YPDSF_3464 YPDSF_3471 SM01321 YPDSF_3471 YPDSF_3481 SM00984 UDP binding domain YPDSF_3485 SM00357 Cold shock protein domain YPDSF_3485 SM00382 ATPases associated with a variety of cellular activities YPDSF_3485 SM00959 Rho termination factor, N-terminal domain YPDSF_3487 SM00487 DEAD-like helicases superfamily YPDSF_3487 SM00490 helicase superfamily c-terminal domain YPDSF_3514 SM00382 ATPases associated with a variety of cellular activities YPDSF_3519 SM00382 ATPases associated with a variety of cellular activities YPDSF_3532 SM00382 ATPases associated with a variety of cellular activities YPDSF_3537 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPDSF_3542 SM01387 YPDSF_3542 YPDSF_3546 SM00316 Ribosomal protein S1-like RNA-binding domain YPDSF_3546 SM00322 K homology RNA-binding domain YPDSF_3551 SM00382 ATPases associated with a variety of cellular activities YPDSF_3553 SM01103 YPDSF_3553 YPDSF_3556 SM00448 cheY-homologous receiver domain YPDSF_3556 SM00862 Transcriptional regulatory protein, C terminal YPDSF_3557 SM00387 Histidine kinase-like ATPases YPDSF_3557 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_3575 SM00116 Domain in cystathionine beta-synthase and other proteins. YPDSF_3575 SM01091 Transporter associated domain YPDSF_3584 SM01321 YPDSF_3584 YPDSF_3589 SM00382 ATPases associated with a variety of cellular activities YPDSF_3593 SM00967 RNA 2'-O ribose methyltransferase substrate binding YPDSF_3594 SM00316 Ribosomal protein S1-like RNA-binding domain YPDSF_3594 SM00357 Cold shock protein domain YPDSF_3594 SM00955 YPDSF_3594 YPDSF_3596 SM00788 Adenylosuccinate synthetase YPDSF_3598 SM00244 prohibitin homologues YPDSF_3599 SM00244 prohibitin homologues YPDSF_3603 SM00853 MutL C terminal dimerisation domain YPDSF_3603 SM01340 YPDSF_3603 YPDSF_3604 SM00257 Lysin motif YPDSF_3604 SM00646 YPDSF_3604 YPDSF_3608 SM00479 YPDSF_3608 YPDSF_3619 SM00841 Elongation factor P, C-terminal YPDSF_3619 SM01185 YPDSF_3619 YPDSF_3623 SM00883 Chaperonin 10 Kd subunit YPDSF_3629 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPDSF_3633 SM01276 YPDSF_3633 YPDSF_3639 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_3640 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_3644 SM01007 Class II Aldolase and Adducin N-terminal domain YPDSF_3651 SM01005 Alanine racemase, C-terminal domain YPDSF_3652 SM00382 ATPases associated with a variety of cellular activities YPDSF_3653 SM00829 Enoylreductase YPDSF_3659 SM00563 Phosphate acyltransferases YPDSF_3663 SM00869 Autotransporter beta-domain YPDSF_3664 SM00060 Fibronectin type 3 domain YPDSF_3683 SM00729 Elongator protein 3, MiaB family, Radical SAM YPDSF_3691 SM00382 ATPases associated with a variety of cellular activities YPDSF_3704 SM00382 ATPases associated with a variety of cellular activities YPDSF_3711 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_3715 SM00387 Histidine kinase-like ATPases YPDSF_3715 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_3715 SM00448 cheY-homologous receiver domain YPDSF_3716 SM00421 helix_turn_helix, Lux Regulon YPDSF_3716 SM00448 cheY-homologous receiver domain YPDSF_3723 SM00382 ATPases associated with a variety of cellular activities YPDSF_3726 SM00798 AICARFT/IMPCHase bienzyme YPDSF_3726 SM00851 MGS-like domain YPDSF_3727 SM01209 YPDSF_3727 YPDSF_3727 SM01210 YPDSF_3727 YPDSF_3729 SM00411 bacterial (prokaryotic) histone like domain YPDSF_3744 SM00663 RNA polymerase I subunit A N-terminus YPDSF_3749 SM00649 Ribosomal protein L11/L12 YPDSF_3750 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YPDSF_3750 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPDSF_3768 SM00382 ATPases associated with a variety of cellular activities YPDSF_3771 SM00530 Helix-turn-helix XRE-family like proteins YPDSF_3776 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_3778 SM00382 ATPases associated with a variety of cellular activities YPDSF_3797 SM00487 DEAD-like helicases superfamily YPDSF_3797 SM00490 helicase superfamily c-terminal domain YPDSF_3798 SM00354 helix_turn _helix lactose operon repressor YPDSF_3801 SM00382 ATPases associated with a variety of cellular activities YPDSF_3801 SM01086 C-terminal, D2-small domain, of ClpB protein YPDSF_3808 SM00382 ATPases associated with a variety of cellular activities YPDSF_3810 SM01321 YPDSF_3810 YPDSF_3832 SM00448 cheY-homologous receiver domain YPDSF_3832 SM00862 Transcriptional regulatory protein, C terminal YPDSF_3833 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPDSF_3833 SM00387 Histidine kinase-like ATPases YPDSF_3833 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_3834 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_3836 SM00971 Serine acetyltransferase, N-terminal YPDSF_3840 SM00450 Rhodanese Homology Domain YPDSF_3845 SM00829 Enoylreductase YPDSF_3853 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain YPDSF_3853 SM01232 YPDSF_3853 YPDSF_3864 SM00532 Ligase N family YPDSF_3865 SM00072 Guanylate kinase homologues. YPDSF_3866 SM01409 YPDSF_3866 YPDSF_3867 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPDSF_3867 SM00954 Region found in RelA / SpoT proteins YPDSF_3869 SM00487 DEAD-like helicases superfamily YPDSF_3869 SM00490 helicase superfamily c-terminal domain YPDSF_3875 SM00382 ATPases associated with a variety of cellular activities YPDSF_3880 SM01230 YPDSF_3880 YPDSF_3881 SM00091 PAS domain YPDSF_3881 SM00387 Histidine kinase-like ATPases YPDSF_3881 SM00388 His Kinase A (phosphoacceptor) domain YPDSF_3882 SM00382 ATPases associated with a variety of cellular activities YPDSF_3882 SM00448 cheY-homologous receiver domain YPDSF_3883 SM00729 Elongator protein 3, MiaB family, Radical SAM YPDSF_3886 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPDSF_3886 SM00474 3'-5' exonuclease YPDSF_3886 SM00475 5'-3' exonuclease YPDSF_3886 SM00482 DNA polymerase A domain YPDSF_3893 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPDSF_3893 SM00895 YPDSF_3893 YPDSF_3900 SM00382 ATPases associated with a variety of cellular activities YPDSF_3901 SM00327 von Willebrand factor (vWF) type A domain YPDSF_3903 SM00344 helix_turn_helix ASNC type YPDSF_3905 SM01228 YPDSF_3905 YPDSF_3914 SM00382 ATPases associated with a variety of cellular activities YPDSF_3921 SM00382 ATPases associated with a variety of cellular activities YPDSF_3924 SM00062 Bacterial periplasmic substrate-binding proteins YPDSF_3933 SM01234 YPDSF_3933 YPDSF_3938 SM00155 Phospholipase D. Active site motifs. YPDSF_3944 SM00220 Serine/Threonine protein kinases, catalytic domain YPDSF_3949 SM00194 Protein tyrosine phosphatase, catalytic domain YPDSF_3949 SM00404 Protein tyrosine phosphatase, catalytic domain motif YPDSF_3952 SM00382 ATPases associated with a variety of cellular activities YPDSF_3969 SM00342 helix_turn_helix, arabinose operon control protein YPDSF_3977 SM00382 ATPases associated with a variety of cellular activities YPDSF_3996 SM00364 Leucine-rich repeats, bacterial type YPDSF_4009 SM00470 ParB-like nuclease domain YPDSF_4021 SM00857 Resolvase, N terminal domain YPDSF_4030 SM00382 ATPases associated with a variety of cellular activities YPDSF_4036 SM00232 JAB/MPN domain YPDSF_4042 SM00635 Bacterial Ig-like domain 2 YPDSF_4048 SM00635 Bacterial Ig-like domain 2 YPDSF_4057 SM00382 ATPases associated with a variety of cellular activities YPDSF_4058 SM00470 ParB-like nuclease domain YPDSF_4059 SM00470 ParB-like nuclease domain YPDSF_4060 SM00487 DEAD-like helicases superfamily YPDSF_4060 SM00490 helicase superfamily c-terminal domain YPDSF_4065 SM01321 YPDSF_4065 YPDSF_4068 SM01321 YPDSF_4068 YPDSF_4075 SM00062 Bacterial periplasmic substrate-binding proteins YPDSF_4083 SM00244 prohibitin homologues YPDSF_4086 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPDSF_4086 SM00475 5'-3' exonuclease YPDSF_4091 SM00481 DNA polymerase alpha chain like domain YPDSF_4127 SM00945 ProQ/FINO family YPDSF_4134 SM00155 Phospholipase D. Active site motifs. YPDSF_4138 SM00857 Resolvase, N terminal domain YPDSF_4141 SM00470 ParB-like nuclease domain YPDSF_4142 SM00382 ATPases associated with a variety of cellular activities YPDSF_4149 SM00470 ParB-like nuclease domain YPDSF_4155 SM00342 helix_turn_helix, arabinose operon control protein