locus-tag class description CH43_10 PF00782 Dual specificity phosphatase, catalytic domain CH43_1000 PF07338 Protein of unknown function (DUF1471) CH43_1001 PF02796 Helix-turn-helix domain of resolvase CH43_1001 PF00665 Integrase core domain CH43_1002 PF01695 IstB-like ATP binding protein CH43_1003 PF08019 Phosphoethanolamine transferase EptA/EptB CH43_1003 PF00884 Sulfatase CH43_1004 PF00196 Bacterial regulatory proteins, luxR family CH43_1004 PF00072 Response regulator receiver domain CH43_1005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_1005 PF07730 Histidine kinase CH43_1005 PF05231 MASE1 CH43_1006 PF07690 Major Facilitator Superfamily CH43_1009 PF04829 Pre-toxin domain with VENN motif CH43_1009 PF13332 Hemagglutinin repeat CH43_1009 PF05594 Haemagluttinin repeat CH43_1009 PF05860 haemagglutination activity domain CH43_101 PF13145 PPIC-type PPIASE domain CH43_1010 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH43_1010 PF17287 POTRA domain CH43_1010 PF08479 POTRA domain, ShlB-type CH43_1012 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH43_1013 PF00528 Binding-protein-dependent transport system inner membrane component CH43_1014 PF00528 Binding-protein-dependent transport system inner membrane component CH43_1014 PF12911 N-terminal TM domain of oligopeptide transport permease C CH43_1015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH43_1015 PF00005 ABC transporter CH43_1016 PF00005 ABC transporter CH43_1016 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH43_1017 PF01270 Glycosyl hydrolases family 8 CH43_1018 PF00563 EAL domain CH43_1018 PF17154 Gammaproteobacterial periplasmic sensor domain CH43_1018 PF00672 HAMP domain CH43_1018 PF00990 Diguanylate cyclase, GGDEF domain CH43_1019 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH43_102 PF01797 Transposase IS200 like CH43_1020 PF06917 Periplasmic pectate lyase CH43_1022 PF00375 Sodium:dicarboxylate symporter family CH43_1024 PF05193 Peptidase M16 inactive domain CH43_1024 PF00675 Insulinase (Peptidase family M16) CH43_1025 PF00294 pfkB family carbohydrate kinase CH43_1026 PF01361 Tautomerase enzyme CH43_1027 PF00563 EAL domain CH43_1028 PF05170 AsmA family CH43_1029 PF02611 CDP-diacylglycerol pyrophosphatase CH43_1030 PF03631 Virulence factor BrkB CH43_1035 PF02595 Glycerate kinase family CH43_1036 PF02447 GntP family permease CH43_1037 PF13556 PucR C-terminal helix-turn-helix domain CH43_1037 PF17853 GGDEF-like domain CH43_1037 PF05651 Putative sugar diacid recognition CH43_1038 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH43_1038 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH43_1039 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH43_104 PF00216 Bacterial DNA-binding protein CH43_1040 PF01432 Peptidase family M3 CH43_1041 PF04445 Putative SAM-dependent methyltransferase CH43_1042 PF08548 Peptidase M10 serralysin C terminal CH43_1042 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH43_1042 PF00413 Matrixin CH43_1043 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH43_1043 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH43_1044 PF00582 Universal stress protein family CH43_1045 PF10625 Universal stress protein B (UspB) CH43_1047 PF01384 Phosphate transporter family CH43_1049 PF13188 PAS domain CH43_1049 PF00512 His Kinase A (phospho-acceptor) domain CH43_1049 PF00072 Response regulator receiver domain CH43_1049 PF08448 PAS fold CH43_1049 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_105 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH43_105 PF05362 Lon protease (S16) C-terminal proteolytic domain CH43_105 PF00004 ATPase family associated with various cellular activities (AAA) CH43_1050 PF00005 ABC transporter CH43_1051 PF02653 Branched-chain amino acid transport system / permease component CH43_1052 PF13407 Periplasmic binding protein domain CH43_1054 PF01116 Fructose-bisphosphate aldolase class-II CH43_1056 PF00486 Transcriptional regulatory protein, C terminal CH43_1056 PF00072 Response regulator receiver domain CH43_1058 PF17954 Quercetinase C-terminal cupin domain CH43_1058 PF02678 Pirin CH43_106 PF06689 ClpX C4-type zinc finger CH43_106 PF10431 C-terminal, D2-small domain, of ClpB protein CH43_106 PF07724 AAA domain (Cdc48 subfamily) CH43_1061 PF02447 GntP family permease CH43_1062 PF01202 Shikimate kinase CH43_1066 PF01914 MarC family integral membrane protein CH43_1067 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH43_1067 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH43_107 PF00574 Clp protease CH43_1072 PF02369 Bacterial Ig-like domain (group 1) CH43_1072 PF09134 Invasin, domain 3 CH43_1072 PF07979 Intimin C-type lectin domain CH43_1072 PF11924 Inverse autotransporter, beta-domain CH43_1073 PF07694 5TMR of 5TMR-LYT CH43_1073 PF06580 Histidine kinase CH43_1074 PF02806 Alpha amylase, C-terminal all-beta domain CH43_1074 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH43_1074 PF00128 Alpha amylase, catalytic domain CH43_1075 PF18390 Glycogen debranching enzyme C-terminal domain CH43_1075 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH43_1075 PF00128 Alpha amylase, catalytic domain CH43_1076 PF00483 Nucleotidyl transferase CH43_1077 PF08323 Starch synthase catalytic domain CH43_1077 PF00534 Glycosyl transferases group 1 CH43_1078 PF00343 Carbohydrate phosphorylase CH43_1079 PF01266 FAD dependent oxidoreductase CH43_1079 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH43_108 PF05697 Bacterial trigger factor protein (TF) CH43_108 PF05698 Bacterial trigger factor protein (TF) C-terminus CH43_108 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH43_1082 PF13333 Integrase core domain CH43_1082 PF00665 Integrase core domain CH43_1082 PF13276 HTH-like domain CH43_1084 PF01138 3' exoribonuclease family, domain 1 CH43_1084 PF00013 KH domain CH43_1084 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH43_1084 PF03725 3' exoribonuclease family, domain 2 CH43_1084 PF00575 S1 RNA binding domain CH43_1085 PF13181 Tetratricopeptide repeat CH43_1085 PF07719 Tetratricopeptide repeat CH43_1086 PF12343 Cold shock protein DEAD box A CH43_1086 PF03880 DbpA RNA binding domain CH43_1086 PF00270 DEAD/DEAH box helicase CH43_1086 PF00271 Helicase conserved C-terminal domain CH43_1088 PF01381 Helix-turn-helix CH43_1089 PF00296 Luciferase-like monooxygenase CH43_1091 PF00529 HlyD membrane-fusion protein of T1SS CH43_1091 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH43_1092 PF00873 AcrB/AcrD/AcrF family CH43_1093 PF02321 Outer membrane efflux protein CH43_1093 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH43_1097 PF13508 Acetyltransferase (GNAT) domain CH43_1098 PF01541 GIY-YIG catalytic domain CH43_11 PF12147 Putative methyltransferase CH43_11 PF12146 Serine aminopeptidase, S33 CH43_110 PF01722 BolA-like protein CH43_1101 PF13416 Bacterial extracellular solute-binding protein CH43_1103 PF00528 Binding-protein-dependent transport system inner membrane component CH43_1104 PF17912 MalK OB fold domain CH43_1104 PF00005 ABC transporter CH43_1104 PF03459 TOBE domain CH43_1107 PF13460 NAD(P)H-binding CH43_1108 PF12706 Beta-lactamase superfamily domain CH43_111 PF03923 Uncharacterized lipoprotein CH43_111 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH43_1110 PF07969 Amidohydrolase family CH43_1111 PF00005 ABC transporter CH43_1112 PF00005 ABC transporter CH43_1113 PF06007 Phosphonate metabolism protein PhnJ CH43_1114 PF05861 Bacterial phosphonate metabolism protein (PhnI) CH43_1115 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH43_1116 PF06754 Phosphonate metabolism protein PhnG CH43_1117 PF00392 Bacterial regulatory proteins, gntR family CH43_1117 PF07702 UTRA domain CH43_112 PF07690 Major Facilitator Superfamily CH43_1120 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH43_1120 PF03477 ATP cone domain CH43_1121 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH43_1121 PF00005 ABC transporter CH43_1122 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH43_1122 PF00005 ABC transporter CH43_1123 PF12911 N-terminal TM domain of oligopeptide transport permease C CH43_1123 PF00528 Binding-protein-dependent transport system inner membrane component CH43_1124 PF00528 Binding-protein-dependent transport system inner membrane component CH43_1127 PF04074 YhcH/YjgK/YiaL CH43_1128 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH43_1128 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH43_1129 PF06877 Regulator of ribonuclease activity B CH43_113 PF03502 Nucleoside-specific channel-forming protein, Tsx CH43_1130 PF00583 Acetyltransferase (GNAT) family CH43_1131 PF10458 Valyl tRNA synthetase tRNA binding arm CH43_1131 PF00133 tRNA synthetases class I (I, L, M and V) CH43_1131 PF08264 Anticodon-binding domain of tRNA CH43_1132 PF04364 DNA polymerase III chi subunit, HolC CH43_1133 PF02789 Cytosol aminopeptidase family, N-terminal domain CH43_1133 PF00883 Cytosol aminopeptidase family, catalytic domain CH43_1134 PF03739 Lipopolysaccharide export system permease LptF/LptG CH43_1135 PF03739 Lipopolysaccharide export system permease LptF/LptG CH43_1137 PF00589 Phage integrase family CH43_1137 PF13356 Arm DNA-binding domain CH43_1139 PF08676 MutL C terminal dimerisation domain CH43_1139 PF01119 DNA mismatch repair protein, C-terminal domain CH43_114 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH43_114 PF06481 COX Aromatic Rich Motif CH43_1140 PF01695 IstB-like ATP binding protein CH43_1141 PF00665 Integrase core domain CH43_1141 PF02796 Helix-turn-helix domain of resolvase CH43_1142 PF12102 Domain of unknown function (DUF3578) CH43_1142 PF07728 AAA domain (dynein-related subfamily) CH43_1144 PF01527 Transposase CH43_1145 PF01555 DNA methylase CH43_115 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH43_1150 PF00665 Integrase core domain CH43_1154 PF05987 Bacterial protein of unknown function (DUF898) CH43_1156 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH43_1157 PF12833 Helix-turn-helix domain CH43_1158 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH43_116 PF00510 Cytochrome c oxidase subunit III CH43_1160 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH43_1160 PF00381 PTS HPr component phosphorylation site CH43_1160 PF02896 PEP-utilising enzyme, TIM barrel domain CH43_1160 PF00391 PEP-utilising enzyme, mobile domain CH43_1160 PF05524 PEP-utilising enzyme, N-terminal CH43_1161 PF10696 Protein of unknown function (DUF2501) CH43_1162 PF03992 Antibiotic biosynthesis monooxygenase CH43_1163 PF01791 DeoC/LacD family aldolase CH43_1164 PF13407 Periplasmic binding protein domain CH43_1165 PF02653 Branched-chain amino acid transport system / permease component CH43_1166 PF02653 Branched-chain amino acid transport system / permease component CH43_1167 PF00005 ABC transporter CH43_1168 PF04198 Putative sugar-binding domain CH43_1168 PF00325 Bacterial regulatory proteins, crp family CH43_1169 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH43_1169 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH43_117 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CH43_1170 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH43_1173 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH43_1174 PF00873 AcrB/AcrD/AcrF family CH43_1176 PF01095 Pectinesterase CH43_1177 PF00990 Diguanylate cyclase, GGDEF domain CH43_1178 PF07256 Protein of unknown function (DUF1435) CH43_118 PF01040 UbiA prenyltransferase family CH43_1180 PF05175 Methyltransferase small domain CH43_1180 PF08468 Methyltransferase small domain N-terminal CH43_1181 PF03603 DNA polymerase III psi subunit CH43_1182 PF00583 Acetyltransferase (GNAT) family CH43_1183 PF00009 Elongation factor Tu GTP binding domain CH43_1183 PF16658 Class II release factor RF3, C-terminal domain CH43_1183 PF03144 Elongation factor Tu domain 2 CH43_1184 PF04972 BON domain CH43_1185 PF07043 Protein of unknown function (DUF1328) CH43_1186 PF01734 Patatin-like phospholipase CH43_1187 PF01026 TatD related DNase CH43_1188 PF01773 Na+ dependent nucleoside transporter N-terminus CH43_1188 PF07662 Na+ dependent nucleoside transporter C-terminus CH43_1188 PF07670 Nucleoside recognition CH43_1189 PF01791 DeoC/LacD family aldolase CH43_119 PF07690 Major Facilitator Superfamily CH43_1190 PF00591 Glycosyl transferase family, a/b domain CH43_1190 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH43_1190 PF02885 Glycosyl transferase family, helical bundle domain CH43_1191 PF01676 Metalloenzyme superfamily CH43_1192 PF01048 Phosphorylase superfamily CH43_1193 PF10144 Bacterial virulence factor haemolysin CH43_1194 PF18429 Domain of unknown function (DUF5609) CH43_1195 PF18073 Rubredoxin metal binding domain CH43_1196 PF01381 Helix-turn-helix CH43_1196 PF13521 AAA domain CH43_1199 PF12848 ABC transporter CH43_1199 PF00005 ABC transporter CH43_12 PF01553 Acyltransferase CH43_120 PF04461 Protein of unknown function (DUF520) CH43_1200 PF00691 OmpA family CH43_1201 PF00990 Diguanylate cyclase, GGDEF domain CH43_1201 PF17152 Periplasmic sensor domain CH43_1203 PF00689 Cation transporting ATPase, C-terminus CH43_1203 PF00690 Cation transporter/ATPase, N-terminus CH43_1204 PF14718 Soluble lytic murein transglycosylase L domain CH43_1204 PF01464 Transglycosylase SLT domain CH43_1205 PF01931 Protein of unknown function DUF84 CH43_1206 PF01371 Trp repressor protein CH43_1207 PF12833 Helix-turn-helix domain CH43_1207 PF06445 GyrI-like small molecule binding domain CH43_1208 PF00300 Histidine phosphatase superfamily (branch 1) CH43_121 PF02558 Ketopantoate reductase PanE/ApbA CH43_121 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH43_1210 PF05981 CreA protein CH43_1211 PF00486 Transcriptional regulatory protein, C terminal CH43_1211 PF00072 Response regulator receiver domain CH43_1213 PF01842 ACT domain CH43_1213 PF00696 Amino acid kinase family CH43_1213 PF13840 ACT domain CH43_1213 PF00742 Homoserine dehydrogenase CH43_1213 PF03447 Homoserine dehydrogenase, NAD binding domain CH43_1214 PF08544 GHMP kinases C terminal CH43_1214 PF00288 GHMP kinases N terminal domain CH43_1215 PF14821 Threonine synthase N terminus CH43_1215 PF00291 Pyridoxal-phosphate dependent enzyme CH43_1217 PF03883 Peroxide stress protein YaaA CH43_1218 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH43_1219 PF00994 Probable molybdopterin binding domain CH43_122 PF01965 DJ-1/PfpI family CH43_1220 PF07690 Major Facilitator Superfamily CH43_1222 PF01184 GPR1/FUN34/yaaH family CH43_1223 PF00012 Hsp70 protein CH43_1224 PF00226 DnaJ domain CH43_1224 PF01556 DnaJ C terminal domain CH43_1224 PF00684 DnaJ central domain CH43_1225 PF06965 Na+/H+ antiporter 1 CH43_1226 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_1226 PF03466 LysR substrate binding domain CH43_1227 PF01649 Ribosomal protein S20 CH43_1228 PF01687 Riboflavin kinase CH43_1228 PF06574 FAD synthetase CH43_1229 PF06827 Zinc finger found in FPG and IleRS CH43_1229 PF00133 tRNA synthetases class I (I, L, M and V) CH43_1229 PF08264 Anticodon-binding domain of tRNA CH43_123 PF02926 THUMP domain CH43_123 PF02568 Thiamine biosynthesis protein (ThiI) CH43_1230 PF01252 Signal peptidase (SPase) II CH43_1231 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH43_1232 PF02401 LytB protein CH43_1233 PF05173 Dihydrodipicolinate reductase, C-terminus CH43_1233 PF01113 Dihydrodipicolinate reductase, N-terminus CH43_1234 PF00117 Glutamine amidotransferase class-I CH43_1234 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH43_1235 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH43_1235 PF02142 MGS-like domain CH43_1235 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH43_1236 PF01810 LysE type translocator CH43_1237 PF06738 Putative threonine/serine exporter CH43_1238 PF12821 Threonine/Serine exporter, ThrE CH43_1239 PF00186 Dihydrofolate reductase CH43_124 PF02609 Exonuclease VII small subunit CH43_1241 PF00149 Calcineurin-like phosphoesterase CH43_1242 PF04379 ApaG domain CH43_1243 PF00398 Ribosomal RNA adenine dimethylase CH43_1244 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH43_1245 PF00639 PPIC-type PPIASE domain CH43_1245 PF09312 SurA N-terminal domain CH43_1246 PF04453 LPS transport system D CH43_1246 PF03968 OstA-like protein CH43_1247 PF00226 DnaJ domain CH43_1247 PF05099 Tellurite resistance protein TerB CH43_1248 PF00849 RNA pseudouridylate synthase CH43_125 PF00348 Polyprenyl synthetase CH43_1257 PF00004 ATPase family associated with various cellular activities (AAA) CH43_1257 PF17871 AAA lid domain CH43_1257 PF07724 AAA domain (Cdc48 subfamily) CH43_1257 PF10431 C-terminal, D2-small domain, of ClpB protein CH43_1258 PF04717 Type VI secretion system, phage-baseplate injector CH43_126 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH43_126 PF02779 Transketolase, pyrimidine binding domain CH43_126 PF02780 Transketolase, C-terminal domain CH43_1265 PF00691 OmpA family CH43_1265 PF05736 OprF membrane domain CH43_1268 PF18337 RapA N-terminal Tudor like domain CH43_1268 PF18339 RapA N-terminal Tudor like domain 1 CH43_1268 PF00176 SNF2 family N-terminal domain CH43_1268 PF12137 RNA polymerase recycling family C-terminal CH43_1268 PF00271 Helicase conserved C-terminal domain CH43_1269 PF00136 DNA polymerase family B CH43_1269 PF03104 DNA polymerase family B, exonuclease domain CH43_1270 PF09335 SNARE associated Golgi protein CH43_1271 PF00005 ABC transporter CH43_1272 PF00528 Binding-protein-dependent transport system inner membrane component CH43_1275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH43_1275 PF12793 Sugar transport-related sRNA regulator N-term CH43_1276 PF07690 Major Facilitator Superfamily CH43_1277 PF00694 Aconitase C-terminal domain CH43_1278 PF00330 Aconitase family (aconitate hydratase) CH43_1279 PF00180 Isocitrate/isopropylmalate dehydrogenase CH43_128 PF04608 Phosphatidylglycerophosphatase A CH43_1280 PF00682 HMGL-like CH43_1280 PF08502 LeuA allosteric (dimerisation) domain CH43_1282 PF03466 LysR substrate binding domain CH43_1282 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_1283 PF00501 AMP-binding enzyme CH43_1284 PF00872 Transposase, Mutator family CH43_1285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH43_1285 PF00205 Thiamine pyrophosphate enzyme, central domain CH43_1285 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH43_1286 PF10369 Small subunit of acetolactate synthase CH43_1287 PF01797 Transposase IS200 like CH43_1288 PF00356 Bacterial regulatory proteins, lacI family CH43_1288 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH43_129 PF00586 AIR synthase related protein, N-terminal domain CH43_129 PF02769 AIR synthase related protein, C-terminal domain CH43_1290 PF06610 L-alanine exporter CH43_1291 PF02381 MraZ protein, putative antitoxin-like CH43_1292 PF01795 MraW methylase family CH43_1293 PF04999 Cell division protein FtsL CH43_1294 PF03717 Penicillin-binding Protein dimerisation domain CH43_1294 PF00905 Penicillin binding protein transpeptidase domain CH43_1295 PF01225 Mur ligase family, catalytic domain CH43_1295 PF02875 Mur ligase family, glutamate ligase domain CH43_1295 PF08245 Mur ligase middle domain CH43_1296 PF02875 Mur ligase family, glutamate ligase domain CH43_1296 PF08245 Mur ligase middle domain CH43_1296 PF01225 Mur ligase family, catalytic domain CH43_1297 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH43_1297 PF00953 Glycosyl transferase family 4 CH43_1298 PF02875 Mur ligase family, glutamate ligase domain CH43_1298 PF08245 Mur ligase middle domain CH43_1299 PF01098 Cell cycle protein CH43_130 PF01029 NusB family CH43_1300 PF03033 Glycosyltransferase family 28 N-terminal domain CH43_1300 PF04101 Glycosyltransferase family 28 C-terminal domain CH43_1301 PF01225 Mur ligase family, catalytic domain CH43_1301 PF08245 Mur ligase middle domain CH43_1301 PF02875 Mur ligase family, glutamate ligase domain CH43_1302 PF07478 D-ala D-ala ligase C-terminus CH43_1302 PF01820 D-ala D-ala ligase N-terminus CH43_1303 PF08478 POTRA domain, FtsQ-type CH43_1303 PF03799 Cell division protein FtsQ CH43_1304 PF02491 SHS2 domain inserted in FTSA CH43_1305 PF00091 Tubulin/FtsZ family, GTPase domain CH43_1305 PF12327 FtsZ family, C-terminal domain CH43_1306 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH43_1308 PF06558 Secretion monitor precursor protein (SecM) CH43_1309 PF02810 SEC-C motif CH43_1309 PF07517 SecA DEAD-like domain CH43_1309 PF01043 SecA preprotein cross-linking domain CH43_1309 PF07516 SecA Wing and Scaffold domain CH43_131 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH43_1310 PF00293 NUDIX domain CH43_1311 PF01695 IstB-like ATP binding protein CH43_1312 PF00665 Integrase core domain CH43_1312 PF02796 Helix-turn-helix domain of resolvase CH43_1313 PF03884 DNA gyrase inhibitor YacG CH43_1314 PF07072 Cell division protein CH43_1315 PF01121 Dephospho-CoA kinase CH43_1316 PF00478 IMP dehydrogenase / GMP reductase domain CH43_1317 PF00482 Type II secretion system (T2SS), protein F CH43_1318 PF00437 Type II/IV secretion system protein CH43_1318 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH43_1319 PF07963 Prokaryotic N-terminal methylation motif CH43_132 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH43_132 PF01872 RibD C-terminal domain CH43_1320 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH43_1320 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH43_1321 PF01510 N-acetylmuramoyl-L-alanine amidase CH43_1322 PF17113 Regulatory signalling modulator protein AmpE CH43_1323 PF00324 Amino acid permease CH43_1324 PF00392 Bacterial regulatory proteins, gntR family CH43_1324 PF07729 FCD domain CH43_1325 PF00456 Transketolase, thiamine diphosphate binding domain CH43_1325 PF17831 Pyruvate dehydrogenase E1 component middle domain CH43_1326 PF02817 e3 binding domain CH43_1326 PF00364 Biotin-requiring enzyme CH43_1326 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH43_1327 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH43_1327 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH43_1328 PF01797 Transposase IS200 like CH43_1329 PF06434 Aconitate hydratase 2 N-terminus CH43_1329 PF11791 Aconitate B N-terminal domain CH43_1329 PF00330 Aconitase family (aconitate hydratase) CH43_133 PF03477 ATP cone domain CH43_1330 PF06062 Uncharacterised protein family (UPF0231) CH43_1331 PF00892 EamA-like transporter family CH43_1332 PF02675 S-adenosylmethionine decarboxylase CH43_1333 PF17284 Spermidine synthase tetramerisation domain CH43_1334 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CH43_1335 PF00394 Multicopper oxidase CH43_1335 PF07731 Multicopper oxidase CH43_1335 PF07732 Multicopper oxidase CH43_1335 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH43_1336 PF00156 Phosphoribosyl transferase domain CH43_1337 PF00484 Carbonic anhydrase CH43_1338 PF00005 ABC transporter CH43_1339 PF01061 ABC-2 type transporter CH43_1341 PF01522 Polysaccharide deacetylase CH43_1342 PF02261 Aspartate decarboxylase CH43_1343 PF02569 Pantoate-beta-alanine ligase CH43_1344 PF02548 Ketopantoate hydroxymethyltransferase CH43_1345 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH43_1346 PF12626 Polymerase A arginine-rich C-terminus CH43_1346 PF12627 Probable RNA and SrmB- binding site of polymerase A CH43_1346 PF01743 Poly A polymerase head domain CH43_1347 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH43_1348 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH43_1349 PF17746 SfsA N-terminal OB domain CH43_1349 PF03749 Sugar fermentation stimulation protein RE domain CH43_1350 PF02834 LigT like Phosphoesterase CH43_1351 PF08482 ATP-dependent helicase C-terminal CH43_1351 PF00271 Helicase conserved C-terminal domain CH43_1351 PF04408 Helicase associated domain (HA2) CH43_1351 PF00270 DEAD/DEAH box helicase CH43_1352 PF00905 Penicillin binding protein transpeptidase domain CH43_1352 PF14814 Bifunctional transglycosylase second domain CH43_1352 PF00912 Transglycosylase CH43_1352 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CH43_1353 PF00005 ABC transporter CH43_1354 PF01497 Periplasmic binding protein CH43_1355 PF01032 FecCD transport family CH43_1356 PF00202 Aminotransferase class-III CH43_1357 PF00654 Voltage gated chloride channel CH43_1358 PF01521 Iron-sulphur cluster biosynthesis CH43_1359 PF03458 UPF0126 domain CH43_1360 PF01497 Periplasmic binding protein CH43_1361 PF01048 Phosphorylase superfamily CH43_1362 PF13286 Phosphohydrolase-associated domain CH43_1362 PF01966 HD domain CH43_1363 PF00595 PDZ domain CH43_1364 PF00072 Response regulator receiver domain CH43_1364 PF00512 His Kinase A (phospho-acceptor) domain CH43_1364 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_1364 PF00672 HAMP domain CH43_1364 PF01627 Hpt domain CH43_1364 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH43_1365 PF04607 Region found in RelA / SpoT proteins CH43_1365 PF02824 TGS domain CH43_1365 PF13291 ACT domain CH43_1366 PF03819 MazG nucleotide pyrophosphohydrolase domain CH43_1367 PF00117 Glutamine amidotransferase class-I CH43_1367 PF06418 CTP synthase N-terminus CH43_1368 PF03952 Enolase, N-terminal domain CH43_1368 PF00113 Enolase, C-terminal TIM barrel domain CH43_1369 PF00080 Copper/zinc superoxide dismutase (SODC) CH43_137 PF07549 SecD/SecF GG Motif CH43_137 PF02355 Protein export membrane protein CH43_1370 PF04055 Radical SAM superfamily CH43_1371 PF01242 6-pyruvoyl tetrahydropterin synthase CH43_1372 PF00175 Oxidoreductase NAD-binding domain CH43_1372 PF00258 Flavodoxin CH43_1372 PF00667 FAD binding domain CH43_1373 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH43_1373 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH43_1374 PF01507 Phosphoadenosine phosphosulfate reductase family CH43_1375 PF01507 Phosphoadenosine phosphosulfate reductase family CH43_1379 PF14824 Sirohaem biosynthesis protein central CH43_1379 PF10414 Sirohaem synthase dimerisation region CH43_1379 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH43_138 PF13721 SecD export protein N-terminal TM region CH43_138 PF02355 Protein export membrane protein CH43_138 PF07549 SecD/SecF GG Motif CH43_1380 PF01507 Phosphoadenosine phosphosulfate reductase family CH43_1381 PF00009 Elongation factor Tu GTP binding domain CH43_1383 PF12084 Protein of unknown function (DUF3561) CH43_1384 PF04977 Septum formation initiator CH43_1385 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH43_1386 PF02542 YgbB family CH43_1387 PF01142 tRNA pseudouridine synthase D (TruD) CH43_1388 PF01975 Survival protein SurE CH43_139 PF02699 Preprotein translocase subunit CH43_1390 PF01551 Peptidase family M23 CH43_1390 PF01476 LysM domain CH43_1391 PF04542 Sigma-70 region 2 CH43_1391 PF00140 Sigma-70 factor, region 1.2 CH43_1391 PF04539 Sigma-70 region 3 CH43_1391 PF04545 Sigma-70, region 4 CH43_1392 PF05190 MutS family domain IV CH43_1392 PF01624 MutS domain I CH43_1392 PF05188 MutS domain II CH43_1392 PF05192 MutS domain III CH43_1392 PF00488 MutS domain V CH43_1393 PF02502 Ribose/Galactose Isomerase CH43_1394 PF00107 Zinc-binding dehydrogenase CH43_1394 PF08240 Alcohol dehydrogenase GroES-like domain CH43_1396 PF02733 Dak1 domain CH43_1397 PF02734 DAK2 domain CH43_1398 PF13936 Helix-turn-helix domain CH43_1398 PF04198 Putative sugar-binding domain CH43_1399 PF02040 Arsenical pump membrane protein CH43_14 PF01066 CDP-alcohol phosphatidyltransferase CH43_140 PF01702 Queuine tRNA-ribosyltransferase CH43_1400 PF01022 Bacterial regulatory protein, arsR family CH43_1403 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH43_1404 PF14376 Haem-binding domain CH43_1404 PF00034 Cytochrome c CH43_1404 PF03150 Di-haem cytochrome c peroxidase CH43_1406 PF00593 TonB dependent receptor CH43_1406 PF07715 TonB-dependent Receptor Plug Domain CH43_1408 PF00557 Metallopeptidase family M24 CH43_141 PF02547 Queuosine biosynthesis protein CH43_1410 PF05683 Fumarase C-terminus CH43_1410 PF05681 Fumarate hydratase (Fumerase) CH43_1411 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH43_1411 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH43_1412 PF01261 Xylose isomerase-like TIM barrel CH43_1413 PF02653 Branched-chain amino acid transport system / permease component CH43_1414 PF02653 Branched-chain amino acid transport system / permease component CH43_1415 PF00005 ABC transporter CH43_1417 PF08220 DeoR-like helix-turn-helix domain CH43_1417 PF00455 DeoR C terminal sensor domain CH43_1418 PF00596 Class II Aldolase and Adducin N-terminal domain CH43_1419 PF00384 Molybdopterin oxidoreductase CH43_1419 PF01568 Molydopterin dinucleotide binding domain CH43_1419 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH43_142 PF04336 Acyl carrier protein phosphodiesterase CH43_1420 PF12800 4Fe-4S binding domain CH43_1420 PF13247 4Fe-4S dicluster domain CH43_1421 PF04976 DMSO reductase anchor subunit (DmsC) CH43_1422 PF02613 Nitrate reductase delta subunit CH43_1423 PF01292 Prokaryotic cytochrome b561 CH43_1424 PF07361 Cytochrome b562 CH43_1425 PF00141 Peroxidase CH43_1428 PF00005 ABC transporter CH43_1429 PF02653 Branched-chain amino acid transport system / permease component CH43_143 PF00578 AhpC/TSA family CH43_143 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH43_1430 PF00456 Transketolase, thiamine diphosphate binding domain CH43_1431 PF02780 Transketolase, C-terminal domain CH43_1431 PF02779 Transketolase, pyrimidine binding domain CH43_1432 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH43_1432 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH43_1435 PF07690 Major Facilitator Superfamily CH43_1436 PF02464 Competence-damaged protein CH43_1437 PF00154 recA bacterial DNA recombination protein CH43_1438 PF02631 RecX family CH43_1439 PF02272 DHHA1 domain CH43_1439 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH43_1439 PF01411 tRNA synthetases class II (A) CH43_1440 PF02599 Global regulator protein family CH43_1444 PF13419 Haloacid dehalogenase-like hydrolase CH43_1445 PF09335 SNARE associated Golgi protein CH43_1446 PF04262 Glutamate-cysteine ligase CH43_1447 PF02664 S-Ribosylhomocysteinase (LuxS) CH43_1448 PF01595 Cyclin M transmembrane N-terminal domain CH43_1448 PF00571 CBS domain CH43_1448 PF03471 Transporter associated domain CH43_1449 PF01578 Cytochrome C assembly protein CH43_1450 PF02978 Signal peptide binding domain CH43_1450 PF02881 SRP54-type protein, helical bundle domain CH43_1450 PF00448 SRP54-type protein, GTPase domain CH43_1451 PF00886 Ribosomal protein S16 CH43_1452 PF05239 PRC-barrel domain CH43_1452 PF01782 RimM N-terminal domain CH43_1453 PF01746 tRNA (Guanine-1)-methyltransferase CH43_1454 PF01245 Ribosomal protein L19 CH43_1455 PF04338 Protein of unknown function, DUF481 CH43_1456 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH43_1457 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH43_1458 PF00072 Response regulator receiver domain CH43_1458 PF04397 LytTr DNA-binding domain CH43_1459 PF00793 DAHP synthetase I family CH43_1460 PF02796 Helix-turn-helix domain of resolvase CH43_1460 PF00665 Integrase core domain CH43_1461 PF01695 IstB-like ATP binding protein CH43_1462 PF00793 DAHP synthetase I family CH43_1463 PF01817 Chorismate mutase type II CH43_1463 PF02153 Prephenate dehydrogenase CH43_1464 PF00800 Prephenate dehydratase CH43_1464 PF01817 Chorismate mutase type II CH43_1466 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH43_1467 PF13525 Outer membrane lipoprotein CH43_1468 PF01479 S4 domain CH43_1468 PF00849 RNA pseudouridylate synthase CH43_147 PF00128 Alpha amylase, catalytic domain CH43_147 PF02903 Alpha amylase, N-terminal ig-like domain CH43_1470 PF17871 AAA lid domain CH43_1470 PF00004 ATPase family associated with various cellular activities (AAA) CH43_1470 PF07724 AAA domain (Cdc48 subfamily) CH43_1470 PF02861 Clp amino terminal domain, pathogenicity island component CH43_1470 PF10431 C-terminal, D2-small domain, of ClpB protein CH43_148 PF00324 Amino acid permease CH43_1480 PF04204 Homoserine O-succinyltransferase CH43_1481 PF01274 Malate synthase CH43_1482 PF00463 Isocitrate lyase family CH43_1483 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH43_1484 PF09339 IclR helix-turn-helix domain CH43_1484 PF01614 Bacterial transcriptional regulator CH43_1485 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH43_1485 PF00809 Pterin binding enzyme CH43_1485 PF02310 B12 binding domain CH43_1485 PF02574 Homocysteine S-methyltransferase CH43_1485 PF02607 B12 binding domain CH43_1488 PF08479 POTRA domain, ShlB-type CH43_1488 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH43_1488 PF17287 POTRA domain CH43_1489 PF00696 Amino acid kinase family CH43_1489 PF01842 ACT domain CH43_149 PF05525 Branched-chain amino acid transport protein CH43_1490 PF00342 Phosphoglucose isomerase CH43_1491 PF06146 Phosphate-starvation-inducible E CH43_1492 PF00528 Binding-protein-dependent transport system inner membrane component CH43_1493 PF00528 Binding-protein-dependent transport system inner membrane component CH43_1493 PF14785 Maltose transport system permease protein MalF P2 domain CH43_1494 PF01547 Bacterial extracellular solute-binding protein CH43_1496 PF17912 MalK OB fold domain CH43_1496 PF00005 ABC transporter CH43_1497 PF02264 LamB porin CH43_1498 PF07148 Maltose operon periplasmic protein precursor (MalM) CH43_150 PF12849 PBP superfamily domain CH43_1500 PF05638 Type VI secretion system effector, Hcp CH43_1504 PF13276 HTH-like domain CH43_1504 PF00665 Integrase core domain CH43_1504 PF13333 Integrase core domain CH43_151 PF11808 Phosphate regulon sensor protein PhoR CH43_151 PF00512 His Kinase A (phospho-acceptor) domain CH43_151 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_151 PF00989 PAS fold CH43_1513 PF10431 C-terminal, D2-small domain, of ClpB protein CH43_1513 PF07724 AAA domain (Cdc48 subfamily) CH43_1513 PF00004 ATPase family associated with various cellular activities (AAA) CH43_1513 PF17871 AAA lid domain CH43_152 PF00486 Transcriptional regulatory protein, C terminal CH43_152 PF00072 Response regulator receiver domain CH43_1520 PF04717 Type VI secretion system, phage-baseplate injector CH43_1523 PF05593 RHS Repeat CH43_1523 PF03527 RHS protein CH43_1523 PF14220 Domain of unknown function (DUF4329) CH43_1529 PF04717 Type VI secretion system, phage-baseplate injector CH43_153 PF00149 Calcineurin-like phosphoesterase CH43_153 PF12320 Type 5 capsule protein repressor C-terminal domain CH43_1531 PF05593 RHS Repeat CH43_1531 PF03527 RHS protein CH43_1534 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH43_1534 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH43_1535 PF02311 AraC-like ligand binding domain CH43_1535 PF12833 Helix-turn-helix domain CH43_1536 PF05025 RbsD / FucU transport protein family CH43_1537 PF00294 pfkB family carbohydrate kinase CH43_1539 PF03358 NADPH-dependent FMN reductase CH43_154 PF13476 AAA domain CH43_1540 PF09084 NMT1/THI5 like CH43_1541 PF00296 Luciferase-like monooxygenase CH43_1542 PF00528 Binding-protein-dependent transport system inner membrane component CH43_1543 PF00005 ABC transporter CH43_1544 PF04221 RelB antitoxin CH43_1545 PF00860 Permease family CH43_1546 PF00999 Sodium/hydrogen exchanger family CH43_1548 PF03279 Bacterial lipid A biosynthesis acyltransferase CH43_155 PF00480 ROK family CH43_1550 PF00005 ABC transporter CH43_1551 PF02653 Branched-chain amino acid transport system / permease component CH43_1553 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH43_1553 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH43_1554 PF01380 SIS domain CH43_1554 PF00571 CBS domain CH43_1555 PF02798 Glutathione S-transferase, N-terminal domain CH43_1558 PF01797 Transposase IS200 like CH43_1559 PF00313 'Cold-shock' DNA-binding domain CH43_156 PF04381 Putative exonuclease, RdgC CH43_1560 PF00313 'Cold-shock' DNA-binding domain CH43_1561 PF05433 Glycine zipper 2TM domain CH43_1562 PF00753 Metallo-beta-lactamase superfamily CH43_1563 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH43_1563 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH43_1564 PF02627 Carboxymuconolactone decarboxylase family CH43_1565 PF07690 Major Facilitator Superfamily CH43_1568 PF02954 Bacterial regulatory protein, Fis family CH43_1569 PF01207 Dihydrouridine synthase (Dus) CH43_157 PF06865 Pyrimidine/purine nucleoside phosphorylase CH43_1571 PF00474 Sodium:solute symporter family CH43_1572 PF06196 Protein of unknown function (DUF997) CH43_1574 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH43_1574 PF00289 Biotin carboxylase, N-terminal domain CH43_1574 PF02785 Biotin carboxylase C-terminal domain CH43_1575 PF00364 Biotin-requiring enzyme CH43_1576 PF01220 Dehydroquinase class II CH43_1577 PF01794 Ferric reductase like transmembrane component CH43_1578 PF00174 Oxidoreductase molybdopterin binding domain CH43_1579 PF00107 Zinc-binding dehydrogenase CH43_1579 PF08240 Alcohol dehydrogenase GroES-like domain CH43_158 PF01202 Shikimate kinase CH43_1580 PF00563 EAL domain CH43_1580 PF17157 Gammaproteobacterial periplasmic sensor domain CH43_1580 PF00990 Diguanylate cyclase, GGDEF domain CH43_1582 PF04085 rod shape-determining protein MreC CH43_1583 PF04093 rod shape-determining protein MreD CH43_1584 PF02545 Maf-like protein CH43_1585 PF00575 S1 RNA binding domain CH43_1585 PF10150 Ribonuclease E/G family CH43_1586 PF13116 Protein of unknown function CH43_1586 PF13502 AsmA-like C-terminal region CH43_1587 PF00795 Carbon-nitrogen hydrolase CH43_1588 PF01523 Putative modulator of DNA gyrase CH43_1589 PF14431 YwqJ-like deaminase CH43_1589 PF18807 Tripartite Tc toxins repeat CH43_1590 PF05785 Rho-activating domain of cytotoxic necrotizing factor CH43_1590 PF18807 Tripartite Tc toxins repeat CH43_1594 PF12255 Insecticide toxin TcdB middle/C-terminal region CH43_1594 PF12256 Insecticide toxin TcdB middle/N-terminal region CH43_1594 PF03534 Salmonella virulence plasmid 65kDa B protein CH43_1595 PF18413 Neuraminidase-like domain CH43_1595 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain CH43_1597 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_1597 PF03466 LysR substrate binding domain CH43_1598 PF03466 LysR substrate binding domain CH43_1598 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_1599 PF07869 Protein of unknown function (DUF1656) CH43_160 PF08241 Methyltransferase domain CH43_1600 PF13533 Biotin-lipoyl like CH43_1601 PF04632 Fusaric acid resistance protein family CH43_1602 PF00171 Aldehyde dehydrogenase family CH43_1603 PF00171 Aldehyde dehydrogenase family CH43_1605 PF01337 Barstar (barnase inhibitor) CH43_1606 PF04751 Protein of unknown function (DUF615) CH43_1607 PF01523 Putative modulator of DNA gyrase CH43_1609 PF07361 Cytochrome b562 CH43_1610 PF14760 Rnk N-terminus CH43_1610 PF01272 Transcription elongation factor, GreA/GreB, C-term CH43_1611 PF00128 Alpha amylase, catalytic domain CH43_1611 PF11941 Domain of unknown function (DUF3459) CH43_1612 PF02378 Phosphotransferase system, EIIC CH43_1612 PF00367 phosphotransferase system, EIIB CH43_1613 PF00356 Bacterial regulatory proteins, lacI family CH43_1615 PF01042 Endoribonuclease L-PSP CH43_1616 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH43_1616 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH43_1617 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH43_1617 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH43_1618 PF00381 PTS HPr component phosphorylation site CH43_1619 PF03668 P-loop ATPase protein family CH43_162 PF07238 PilZ domain CH43_162 PF07317 Flagellar regulator YcgR CH43_1620 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH43_1621 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH43_1622 PF04552 Sigma-54, DNA binding domain CH43_1622 PF04963 Sigma-54 factor, core binding domain CH43_1622 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH43_1623 PF00005 ABC transporter CH43_1623 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH43_1624 PF03968 OstA-like protein CH43_1625 PF06835 Lipopolysaccharide-assembly, LptC-related CH43_1627 PF00571 CBS domain CH43_1627 PF01380 SIS domain CH43_1628 PF01699 Sodium/calcium exchanger protein CH43_1629 PF00005 ABC transporter CH43_163 PF00171 Aldehyde dehydrogenase family CH43_1630 PF02405 Permease MlaE CH43_1631 PF02470 MlaD protein CH43_1632 PF05494 MlaC protein CH43_1633 PF13466 STAS domain CH43_1634 PF01722 BolA-like protein CH43_1635 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH43_1636 PF13180 PDZ domain CH43_1637 PF01797 Transposase IS200 like CH43_1638 PF13180 PDZ domain CH43_1638 PF00595 PDZ domain CH43_1639 PF06295 Protein of unknown function (DUF1043) CH43_164 PF00696 Amino acid kinase family CH43_164 PF01472 PUA domain CH43_1640 PF03969 AFG1-like ATPase CH43_1641 PF00572 Ribosomal protein L13 CH43_1642 PF00380 Ribosomal protein S9/S16 CH43_1643 PF00043 Glutathione S-transferase, C-terminal domain CH43_1643 PF02798 Glutathione S-transferase, N-terminal domain CH43_1644 PF04386 Stringent starvation protein B CH43_1646 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH43_1646 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH43_1647 PF01493 GXGXG motif CH43_1647 PF00310 Glutamine amidotransferases class-II CH43_1647 PF04898 Glutamate synthase central domain CH43_1647 PF01645 Conserved region in glutamate synthase CH43_1648 PF16199 Radical_SAM C-terminal domain CH43_1648 PF04055 Radical SAM superfamily CH43_1649 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_1649 PF18415 Histidine kinase receptor ArcB trans-membrane domain CH43_1649 PF00989 PAS fold CH43_1649 PF01627 Hpt domain CH43_1649 PF00072 Response regulator receiver domain CH43_1649 PF00512 His Kinase A (phospho-acceptor) domain CH43_165 PF07417 Sigma factor-binding transcriptional regulator Crl CH43_1651 PF00912 Transglycosylase CH43_1652 PF04972 BON domain CH43_1653 PF13580 SIS domain CH43_1654 PF02021 Uncharacterised protein family UPF0102 CH43_1655 PF04348 LppC putative lipoprotein CH43_1656 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH43_1657 PF17954 Quercetinase C-terminal cupin domain CH43_1657 PF02678 Pirin CH43_1658 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_1658 PF03466 LysR substrate binding domain CH43_1659 PF13409 Glutathione S-transferase, N-terminal domain CH43_1660 PF07681 DoxX CH43_1662 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CH43_1663 PF05957 Bacterial protein of unknown function (DUF883) CH43_1665 PF13721 SecD export protein N-terminal TM region CH43_1666 PF09335 SNARE associated Golgi protein CH43_1668 PF07729 FCD domain CH43_1668 PF00392 Bacterial regulatory proteins, gntR family CH43_167 PF00156 Phosphoribosyl transferase domain CH43_1671 PF02614 Glucuronate isomerase CH43_1672 PF08125 Mannitol dehydrogenase C-terminal domain CH43_1672 PF01232 Mannitol dehydrogenase Rossmann domain CH43_1673 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH43_1673 PF08666 SAF domain CH43_1674 PF10688 Bacterial inner membrane protein CH43_1675 PF01797 Transposase IS200 like CH43_1677 PF00375 Sodium:dicarboxylate symporter family CH43_1678 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH43_1679 PF01863 Protein of unknown function DUF45 CH43_1680 PF03797 Autotransporter beta-domain CH43_1681 PF05175 Methyltransferase small domain CH43_1682 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH43_1682 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH43_1683 PF03729 Short repeat of unknown function (DUF308) CH43_1686 PF00092 von Willebrand factor type A domain CH43_1688 PF02342 TerD domain CH43_1689 PF00092 von Willebrand factor type A domain CH43_1690 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH43_1690 PF17287 POTRA domain CH43_1690 PF08479 POTRA domain, ShlB-type CH43_1691 PF13018 Extended Signal Peptide of Type V secretion system CH43_1691 PF13332 Hemagglutinin repeat CH43_1691 PF05860 haemagglutination activity domain CH43_1691 PF04829 Pre-toxin domain with VENN motif CH43_1693 PF04829 Pre-toxin domain with VENN motif CH43_1693 PF05860 haemagglutination activity domain CH43_1693 PF13332 Hemagglutinin repeat CH43_1693 PF13018 Extended Signal Peptide of Type V secretion system CH43_1695 PF04829 Pre-toxin domain with VENN motif CH43_1695 PF05860 haemagglutination activity domain CH43_1695 PF13332 Hemagglutinin repeat CH43_1695 PF13018 Extended Signal Peptide of Type V secretion system CH43_1699 PF00005 ABC transporter CH43_1699 PF17912 MalK OB fold domain CH43_1699 PF03459 TOBE domain CH43_1700 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CH43_1701 PF00356 Bacterial regulatory proteins, lacI family CH43_1702 PF13416 Bacterial extracellular solute-binding protein CH43_1703 PF00528 Binding-protein-dependent transport system inner membrane component CH43_1704 PF00528 Binding-protein-dependent transport system inner membrane component CH43_1706 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH43_1706 PF14310 Fibronectin type III-like domain CH43_1706 PF00933 Glycosyl hydrolase family 3 N terminal domain CH43_1708 PF04632 Fusaric acid resistance protein family CH43_1709 PF00529 HlyD membrane-fusion protein of T1SS CH43_1709 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH43_171 PF01546 Peptidase family M20/M25/M40 CH43_171 PF07687 Peptidase dimerisation domain CH43_1716 PF01042 Endoribonuclease L-PSP CH43_172 PF00817 impB/mucB/samB family CH43_172 PF11799 impB/mucB/samB family C-terminal domain CH43_172 PF11798 IMS family HHH motif CH43_1720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_1720 PF03466 LysR substrate binding domain CH43_1721 PF01695 IstB-like ATP binding protein CH43_1722 PF01695 IstB-like ATP binding protein CH43_1723 PF00665 Integrase core domain CH43_1723 PF02796 Helix-turn-helix domain of resolvase CH43_173 PF03009 Glycerophosphoryl diester phosphodiesterase family CH43_1734 PF04545 Sigma-70, region 4 CH43_1734 PF04539 Sigma-70 region 3 CH43_1734 PF04546 Sigma-70, non-essential region CH43_1734 PF04542 Sigma-70 region 2 CH43_1734 PF03979 Sigma-70 factor, region 1.1 CH43_1734 PF00140 Sigma-70 factor, region 1.2 CH43_1735 PF01807 CHC2 zinc finger CH43_1735 PF08275 DNA primase catalytic core, N-terminal domain CH43_1735 PF08278 DNA primase DnaG DnaB-binding CH43_1735 PF10410 DnaB-helicase binding domain of primase CH43_1736 PF01165 Ribosomal protein S21 CH43_1737 PF00814 Glycoprotease family CH43_1738 PF02660 Glycerol-3-phosphate acyltransferase CH43_1739 PF02152 Dihydroneopterin aldolase CH43_1740 PF02673 Bacitracin resistance protein BacA CH43_1741 PF01743 Poly A polymerase head domain CH43_1741 PF01966 HD domain CH43_1741 PF12627 Probable RNA and SrmB- binding site of polymerase A CH43_1742 PF08239 Bacterial SH3 domain CH43_1743 PF01928 CYTH domain CH43_1744 PF03710 Glutamate-ammonia ligase adenylyltransferase CH43_1744 PF08335 GlnD PII-uridylyltransferase CH43_1745 PF01467 Cytidylyltransferase-like CH43_1745 PF00294 pfkB family carbohydrate kinase CH43_1746 PF13520 Amino acid permease CH43_1747 PF04380 Membrane fusogenic activity CH43_1749 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH43_175 PF02424 ApbE family CH43_1750 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH43_1751 PF03738 Glutathionylspermidine synthase preATP-grasp CH43_1752 PF06693 Protein of unknown function (DUF1190) CH43_1754 PF02321 Outer membrane efflux protein CH43_1755 PF00293 NUDIX domain CH43_1756 PF06853 Protein of unknown function (DUF1249) CH43_1757 PF00149 Calcineurin-like phosphoesterase CH43_1758 PF05728 Uncharacterised protein family (UPF0227) CH43_1759 PF01751 Toprim domain CH43_1759 PF00204 DNA gyrase B CH43_1759 PF00986 DNA gyrase B subunit, carboxyl terminus CH43_1759 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_176 PF00970 Oxidoreductase FAD-binding domain CH43_176 PF00175 Oxidoreductase NAD-binding domain CH43_176 PF00111 2Fe-2S iron-sulfur cluster binding domain CH43_1760 PF03466 LysR substrate binding domain CH43_1760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_1761 PF02525 Flavodoxin-like fold CH43_1762 PF00521 DNA gyrase/topoisomerase IV, subunit A CH43_1762 PF03989 DNA gyrase C-terminal domain, beta-propeller CH43_1763 PF01553 Acyltransferase CH43_1764 PF07732 Multicopper oxidase CH43_1764 PF07731 Multicopper oxidase CH43_1765 PF04055 Radical SAM superfamily CH43_1765 PF11842 Domain of unknown function (DUF3362) CH43_1765 PF08497 Radical SAM N-terminal CH43_1766 PF04055 Radical SAM superfamily CH43_1766 PF08497 Radical SAM N-terminal CH43_1766 PF11842 Domain of unknown function (DUF3362) CH43_1767 PF00248 Aldo/keto reductase family CH43_1768 PF00465 Iron-containing alcohol dehydrogenase CH43_1769 PF12833 Helix-turn-helix domain CH43_1769 PF06719 AraC-type transcriptional regulator N-terminus CH43_177 PF02508 Rnf-Nqr subunit, membrane protein CH43_1770 PF09335 SNARE associated Golgi protein CH43_1771 PF01053 Cys/Met metabolism PLP-dependent enzyme CH43_1772 PF01618 MotA/TolQ/ExbB proton channel family CH43_1774 PF02472 Biopolymer transport protein ExbD/TolR CH43_178 PF02508 Rnf-Nqr subunit, membrane protein CH43_1781 PF00437 Type II/IV secretion system protein CH43_1784 PF04972 BON domain CH43_1784 PF13629 Pilus formation protein N terminal region CH43_1784 PF00263 Bacterial type II and III secretion system protein CH43_1785 PF04972 BON domain CH43_1785 PF00263 Bacterial type II and III secretion system protein CH43_1785 PF13629 Pilus formation protein N terminal region CH43_1789 PF00577 Outer membrane usher protein CH43_1789 PF13954 PapC N-terminal domain CH43_1789 PF13953 PapC C-terminal domain CH43_179 PF04205 FMN-binding domain CH43_1790 PF02753 Pili assembly chaperone PapD, C-terminal domain CH43_1790 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH43_1793 PF01497 Periplasmic binding protein CH43_1796 PF00771 FHIPEP family CH43_1797 PF01312 FlhB HrpN YscU SpaS Family CH43_1798 PF01311 Bacterial export proteins, family 1 CH43_1799 PF01313 Bacterial export proteins, family 3 CH43_180 PF03116 NQR2, RnfD, RnfE family CH43_1800 PF00813 FliP family CH43_1801 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH43_1803 PF00158 Sigma-54 interaction domain CH43_1803 PF00072 Response regulator receiver domain CH43_1803 PF02954 Bacterial regulatory protein, Fis family CH43_1804 PF02049 Flagellar hook-basal body complex protein FliE CH43_1805 PF01514 Secretory protein of YscJ/FliF family CH43_1805 PF08345 Flagellar M-ring protein C-terminal CH43_1808 PF18269 T3SS EscN ATPase C-terminal domain CH43_1808 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH43_181 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH43_181 PF11973 NQRA C-terminal domain CH43_1812 PF13144 Chaperone for flagella basal body P-ring formation CH43_1813 PF00460 Flagella basal body rod protein CH43_1814 PF00460 Flagella basal body rod protein CH43_1814 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH43_1815 PF13860 FlgD Ig-like domain CH43_1815 PF03963 Flagellar hook capping protein - N-terminal region CH43_1815 PF13861 FlgD Tudor-like domain CH43_1816 PF07559 Flagellar basal body protein FlaE CH43_1816 PF00460 Flagella basal body rod protein CH43_1816 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH43_1817 PF00460 Flagella basal body rod protein CH43_1817 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH43_1818 PF00460 Flagella basal body rod protein CH43_1818 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH43_1819 PF02107 Flagellar L-ring protein CH43_182 PF13230 Glutamine amidotransferases class-II CH43_1820 PF02119 Flagellar P-ring protein CH43_1822 PF00460 Flagella basal body rod protein CH43_1822 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH43_1826 PF18500 CadC C-terminal domain 1 CH43_1826 PF00486 Transcriptional regulatory protein, C terminal CH43_1827 PF00669 Bacterial flagellin N-terminal helical region CH43_1827 PF00700 Bacterial flagellin C-terminal helical region CH43_1828 PF00700 Bacterial flagellin C-terminal helical region CH43_1828 PF00669 Bacterial flagellin N-terminal helical region CH43_1829 PF00669 Bacterial flagellin N-terminal helical region CH43_1829 PF00700 Bacterial flagellin C-terminal helical region CH43_183 PF03734 L,D-transpeptidase catalytic domain CH43_1830 PF00669 Bacterial flagellin N-terminal helical region CH43_1830 PF00700 Bacterial flagellin C-terminal helical region CH43_1831 PF07196 Flagellin hook IN motif CH43_1831 PF07195 Flagellar hook-associated protein 2 C-terminus CH43_1831 PF02465 Flagellar hook-associated protein 2 N-terminus CH43_1836 PF04545 Sigma-70, region 4 CH43_1836 PF04542 Sigma-70 region 2 CH43_1837 PF01618 MotA/TolQ/ExbB proton channel family CH43_1838 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH43_1838 PF00691 OmpA family CH43_184 PF13580 SIS domain CH43_1842 PF05433 Glycine zipper 2TM domain CH43_1845 PF00665 Integrase core domain CH43_1845 PF13333 Integrase core domain CH43_1845 PF13276 HTH-like domain CH43_1847 PF07715 TonB-dependent Receptor Plug Domain CH43_1847 PF00593 TonB dependent receptor CH43_1848 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH43_1849 PF06276 Ferric iron reductase FhuF-like transporter CH43_1849 PF04183 IucA / IucC family CH43_185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH43_185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH43_185 PF09317 Domain of unknown function (DUF1974) CH43_1851 PF06276 Ferric iron reductase FhuF-like transporter CH43_1851 PF04183 IucA / IucC family CH43_1852 PF04183 IucA / IucC family CH43_1852 PF06276 Ferric iron reductase FhuF-like transporter CH43_1856 PF00765 Autoinducer synthase CH43_1857 PF03472 Autoinducer binding domain CH43_1857 PF00196 Bacterial regulatory proteins, luxR family CH43_1859 PF02517 CPBP intramembrane metalloprotease CH43_1861 PF12759 InsA C-terminal domain CH43_1861 PF03811 InsA N-terminal domain CH43_1868 PF05736 OprF membrane domain CH43_1868 PF00691 OmpA family CH43_1870 PF00004 ATPase family associated with various cellular activities (AAA) CH43_1870 PF07724 AAA domain (Cdc48 subfamily) CH43_1870 PF17871 AAA lid domain CH43_1870 PF10431 C-terminal, D2-small domain, of ClpB protein CH43_1874 PF03811 InsA N-terminal domain CH43_1874 PF12759 InsA C-terminal domain CH43_1875 PF03400 IS1 transposase CH43_1877 PF02899 Phage integrase, N-terminal SAM-like domain CH43_1877 PF00589 Phage integrase family CH43_1879 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH43_1879 PF01276 Orn/Lys/Arg decarboxylase, major domain CH43_1879 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH43_188 PF18071 HMW1C N-terminal CH43_188 PF18254 HMW1 domain 2 CH43_1880 PF13407 Periplasmic binding protein domain CH43_1881 PF00005 ABC transporter CH43_1882 PF02653 Branched-chain amino acid transport system / permease component CH43_1883 PF07715 TonB-dependent Receptor Plug Domain CH43_1885 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CH43_1885 PF01464 Transglycosylase SLT domain CH43_1886 PF04362 Bacterial Fe(2+) trafficking CH43_1887 PF10576 Iron-sulfur binding domain of endonuclease III CH43_1887 PF00633 Helix-hairpin-helix motif CH43_1887 PF00730 HhH-GPD superfamily base excision DNA repair protein CH43_1887 PF14815 NUDIX domain CH43_1888 PF02390 Putative methyltransferase CH43_1889 PF04320 Protein with unknown function (DUF469) CH43_189 PF05860 haemagglutination activity domain CH43_1890 PF04960 Glutaminase CH43_1891 PF11101 Protein of unknown function (DUF2884) CH43_1892 PF11101 Protein of unknown function (DUF2884) CH43_1893 PF11713 Peptidase C80 family CH43_1893 PF12146 Serine aminopeptidase, S33 CH43_1893 PF16671 Actin cross-linking domain CH43_1893 PF07634 RtxA repeat CH43_1893 PF11647 Membrane Localization Domain CH43_1894 PF06969 HemN C-terminal domain CH43_1894 PF04055 Radical SAM superfamily CH43_1895 PF01725 Ham1 family CH43_1896 PF02594 Uncharacterised ACR, YggU family COG1872 CH43_1897 PF02325 YGGT family CH43_1898 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH43_1898 PF03807 NADP oxidoreductase coenzyme F420-dependent CH43_1899 PF01168 Alanine racemase, N-terminal domain CH43_190 PF08479 POTRA domain, ShlB-type CH43_190 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH43_1900 PF00437 Type II/IV secretion system protein CH43_1901 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH43_1902 PF00795 Carbon-nitrogen hydrolase CH43_1903 PF03652 Holliday junction resolvase CH43_1904 PF02622 Uncharacterized ACR, COG1678 CH43_1905 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH43_1905 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH43_1906 PF04452 RNA methyltransferase CH43_1907 PF04231 Endonuclease I CH43_1908 PF10263 SprT-like family CH43_1908 PF17283 SprT-like zinc ribbon domain CH43_1909 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH43_1909 PF02772 S-adenosylmethionine synthetase, central domain CH43_1909 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH43_191 PF01636 Phosphotransferase enzyme family CH43_1911 PF17944 Arginine decarboxylase C-terminal helical extension CH43_1911 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH43_1911 PF17810 Arginine decarboxylase helical bundle domain CH43_1913 PF01435 Peptidase family M48 CH43_1914 PF02780 Transketolase, C-terminal domain CH43_1914 PF00456 Transketolase, thiamine diphosphate binding domain CH43_1914 PF02779 Transketolase, pyrimidine binding domain CH43_1916 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH43_1916 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH43_1917 PF00162 Phosphoglycerate kinase CH43_1918 PF01116 Fructose-bisphosphate aldolase class-II CH43_1919 PF05552 Conserved TM helix CH43_1919 PF00924 Mechanosensitive ion channel CH43_192 PF01008 Initiation factor 2 subunit family CH43_1920 PF01810 LysE type translocator CH43_1921 PF04402 Protein of unknown function (DUF541) CH43_1922 PF03466 LysR substrate binding domain CH43_1922 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_1923 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH43_1924 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH43_1924 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH43_1924 PF01842 ACT domain CH43_1925 PF01797 Transposase IS200 like CH43_1926 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH43_1927 PF05164 Cell division protein ZapA CH43_1928 PF03695 Uncharacterised protein family (UPF0149) CH43_1929 PF00557 Metallopeptidase family M24 CH43_1929 PF05195 Aminopeptidase P, N-terminal domain CH43_193 PF03079 ARD/ARD' family CH43_1930 PF01494 FAD binding domain CH43_1931 PF01494 FAD binding domain CH43_1932 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH43_1932 PF01571 Aminomethyltransferase folate-binding domain CH43_1933 PF01597 Glycine cleavage H-protein CH43_1934 PF02347 Glycine cleavage system P-protein CH43_1937 PF13018 Extended Signal Peptide of Type V secretion system CH43_1937 PF03895 YadA-like membrane anchor domain CH43_1937 PF05658 Head domain of trimeric autotransporter adhesin CH43_1937 PF05662 Coiled stalk of trimeric autotransporter adhesin CH43_1939 PF03006 Haemolysin-III related CH43_1941 PF01571 Aminomethyltransferase folate-binding domain CH43_1942 PF03937 Flavinator of succinate dehydrogenase CH43_1943 PF00486 Transcriptional regulatory protein, C terminal CH43_1943 PF00072 Response regulator receiver domain CH43_1944 PF00512 His Kinase A (phospho-acceptor) domain CH43_1944 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_1944 PF00672 HAMP domain CH43_1945 PF06123 Inner membrane protein CreD CH43_1946 PF00258 Flavodoxin CH43_1947 PF02899 Phage integrase, N-terminal SAM-like domain CH43_1947 PF00589 Phage integrase family CH43_1948 PF13098 Thioredoxin-like domain CH43_1948 PF10411 Disulfide bond isomerase protein N-terminus CH43_1949 PF17768 RecJ OB domain CH43_1949 PF01368 DHH family CH43_1949 PF02272 DHHA1 domain CH43_195 PF00596 Class II Aldolase and Adducin N-terminal domain CH43_1950 PF00472 RF-1 domain CH43_1950 PF03462 PCRF domain CH43_1951 PF00152 tRNA synthetases class II (D, K and N) CH43_1951 PF01336 OB-fold nucleic acid binding domain CH43_1953 PF00589 Phage integrase family CH43_1953 PF14659 Phage integrase, N-terminal SAM-like domain CH43_1953 PF13356 Arm DNA-binding domain CH43_1957 PF15723 Motility quorum-sensing regulator, toxin of MqsA CH43_1958 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA CH43_196 PF00155 Aminotransferase class I and II CH43_197 PF00795 Carbon-nitrogen hydrolase CH43_1975 PF03551 Transcriptional regulator PadR-like family CH43_1976 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CH43_1978 PF13407 Periplasmic binding protein domain CH43_1979 PF02653 Branched-chain amino acid transport system / permease component CH43_198 PF07687 Peptidase dimerisation domain CH43_198 PF01546 Peptidase family M20/M25/M40 CH43_1980 PF00005 ABC transporter CH43_1981 PF00005 ABC transporter CH43_1981 PF17912 MalK OB fold domain CH43_1982 PF13416 Bacterial extracellular solute-binding protein CH43_1983 PF00528 Binding-protein-dependent transport system inner membrane component CH43_1984 PF00528 Binding-protein-dependent transport system inner membrane component CH43_1985 PF07745 Glycosyl hydrolase family 53 CH43_1988 PF00367 phosphotransferase system, EIIB CH43_1988 PF02378 Phosphotransferase system, EIIC CH43_1989 PF02264 LamB porin CH43_199 PF00266 Aminotransferase class-V CH43_1990 PF00356 Bacterial regulatory proteins, lacI family CH43_1991 PF01055 Glycosyl hydrolases family 31 CH43_1991 PF13802 Galactose mutarotase-like CH43_1991 PF17137 Domain of unknown function (DUF5110) CH43_1991 PF16338 Domain of unknown function (DUF4968) CH43_1992 PF07690 Major Facilitator Superfamily CH43_1993 PF00356 Bacterial regulatory proteins, lacI family CH43_1996 PF01116 Fructose-bisphosphate aldolase class-II CH43_1998 PF00884 Sulfatase CH43_1999 PF04055 Radical SAM superfamily CH43_1999 PF13186 Iron-sulfur cluster-binding domain CH43_20 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH43_20 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH43_200 PF02796 Helix-turn-helix domain of resolvase CH43_200 PF00665 Integrase core domain CH43_2002 PF01979 Amidohydrolase family CH43_2003 PF03610 PTS system fructose IIA component CH43_2004 PF03613 PTS system mannose/fructose/sorbose family IID component CH43_2005 PF03609 PTS system sorbose-specific iic component CH43_2006 PF03830 PTS system sorbose subfamily IIB component CH43_2007 PF01380 SIS domain CH43_2008 PF08013 Tagatose 6 phosphate kinase CH43_2009 PF08220 DeoR-like helix-turn-helix domain CH43_2009 PF00455 DeoR C terminal sensor domain CH43_201 PF01695 IstB-like ATP binding protein CH43_2010 PF00884 Sulfatase CH43_2012 PF00665 Integrase core domain CH43_2012 PF02796 Helix-turn-helix domain of resolvase CH43_2013 PF01695 IstB-like ATP binding protein CH43_2014 PF02278 Polysaccharide lyase family 8, super-sandwich domain CH43_2014 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain CH43_2014 PF09093 Lyase, catalytic CH43_2014 PF09092 Lyase, N terminal CH43_2018 PF00484 Carbonic anhydrase CH43_202 PF00266 Aminotransferase class-V CH43_2021 PF03958 Bacterial type II/III secretion system short domain CH43_2021 PF00263 Bacterial type II and III secretion system protein CH43_2024 PF00482 Type II secretion system (T2SS), protein F CH43_2025 PF07963 Prokaryotic N-terminal methylation motif CH43_2025 PF08334 Type II secretion system (T2SS), protein G CH43_203 PF00005 ABC transporter CH43_2033 PF01478 Type IV leader peptidase family CH43_2033 PF06750 Bacterial Peptidase A24 N-terminal domain CH43_2035 PF00872 Transposase, Mutator family CH43_2036 PF00872 Transposase, Mutator family CH43_2040 PF02203 Tar ligand binding domain homologue CH43_2040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH43_2040 PF00672 HAMP domain CH43_2042 PF03466 LysR substrate binding domain CH43_2042 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_2043 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_2043 PF03466 LysR substrate binding domain CH43_2044 PF07690 Major Facilitator Superfamily CH43_2045 PF00356 Bacterial regulatory proteins, lacI family CH43_2046 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH43_2046 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH43_2047 PF00384 Molybdopterin oxidoreductase CH43_2047 PF01568 Molydopterin dinucleotide binding domain CH43_2048 PF00501 AMP-binding enzyme CH43_2048 PF01553 Acyltransferase CH43_2048 PF13193 AMP-binding enzyme C-terminal domain CH43_2049 PF07690 Major Facilitator Superfamily CH43_205 PF00528 Binding-protein-dependent transport system inner membrane component CH43_2052 PF00248 Aldo/keto reductase family CH43_2053 PF02976 DNA mismatch repair enzyme MutH CH43_2054 PF00293 NUDIX domain CH43_2055 PF01590 GAF domain CH43_2055 PF02896 PEP-utilising enzyme, TIM barrel domain CH43_2055 PF00391 PEP-utilising enzyme, mobile domain CH43_2055 PF05524 PEP-utilising enzyme, N-terminal CH43_2056 PF01790 Prolipoprotein diacylglyceryl transferase CH43_2057 PF00303 Thymidylate synthase CH43_206 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH43_2063 PF17946 RecC C-terminal domain CH43_2064 PF05193 Peptidase M16 inactive domain CH43_2064 PF00675 Insulinase (Peptidase family M16) CH43_2064 PF16187 Middle or third domain of peptidase_M16 CH43_2065 PF13361 UvrD-like helicase C-terminal domain CH43_2065 PF12705 PD-(D/E)XK nuclease superfamily CH43_2065 PF00580 UvrD/REP helicase N-terminal domain CH43_2066 PF13538 UvrD-like helicase C-terminal domain CH43_2067 PF00583 Acetyltransferase (GNAT) family CH43_2067 PF00696 Amino acid kinase family CH43_2068 PF01695 IstB-like ATP binding protein CH43_2069 PF00665 Integrase core domain CH43_2069 PF02796 Helix-turn-helix domain of resolvase CH43_2070 PF00696 Amino acid kinase family CH43_2070 PF00583 Acetyltransferase (GNAT) family CH43_2071 PF11741 AMIN domain CH43_2071 PF01520 N-acetylmuramoyl-L-alanine amidase CH43_2075 PF03562 MltA specific insert domain CH43_2075 PF06725 3D domain CH43_2076 PF00899 ThiF family CH43_2077 PF02657 Fe-S metabolism associated domain CH43_2078 PF00266 Aminotransferase class-V CH43_2080 PF03466 LysR substrate binding domain CH43_2080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_2081 PF04241 Protein of unknown function (DUF423) CH43_2082 PF01728 FtsJ-like methyltransferase CH43_2082 PF18125 RlmM ferredoxin-like domain CH43_2083 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH43_2083 PF01367 5'-3' exonuclease, C-terminal SAM fold CH43_2084 PF03641 Possible lysine decarboxylase CH43_2084 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH43_2084 PF11892 Domain of unknown function (DUF3412) CH43_2085 PF14489 QueF-like protein CH43_2085 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH43_2086 PF07348 Syd protein (SUKH-2) CH43_2087 PF01797 Transposase IS200 like CH43_2088 PF04287 tRNA pseudouridine synthase C CH43_2089 PF00849 RNA pseudouridylate synthase CH43_209 PF01425 Amidase CH43_2090 PF00258 Flavodoxin CH43_2091 PF11944 Protein of unknown function (DUF3461) CH43_2092 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH43_2092 PF14602 Hexapeptide repeat of succinyl-transferase CH43_2092 PF00132 Bacterial transferase hexapeptide (six repeats) CH43_2093 PF01842 ACT domain CH43_2093 PF08335 GlnD PII-uridylyltransferase CH43_2093 PF01966 HD domain CH43_2093 PF01909 Nucleotidyltransferase domain CH43_2094 PF00557 Metallopeptidase family M24 CH43_2095 PF00318 Ribosomal protein S2 CH43_2096 PF00889 Elongation factor TS CH43_2097 PF00696 Amino acid kinase family CH43_2098 PF01765 Ribosome recycling factor CH43_2099 PF13288 DXP reductoisomerase C-terminal domain CH43_2099 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH43_2099 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH43_2100 PF01255 Putative undecaprenyl diphosphate synthase CH43_2102 PF17820 PDZ domain CH43_2102 PF02163 Peptidase family M50 CH43_2103 PF01103 Surface antigen CH43_2103 PF07244 Surface antigen variable number repeat CH43_2104 PF03938 Outer membrane protein (OmpH-like) CH43_2105 PF00132 Bacterial transferase hexapeptide (six repeats) CH43_2105 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH43_2106 PF07977 FabA-like domain CH43_2107 PF00132 Bacterial transferase hexapeptide (six repeats) CH43_2107 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH43_2108 PF02684 Lipid-A-disaccharide synthetase CH43_2109 PF01351 Ribonuclease HII CH43_211 PF07690 Major Facilitator Superfamily CH43_2110 PF14579 Helix-hairpin-helix motif CH43_2110 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH43_2110 PF02811 PHP domain CH43_2110 PF01336 OB-fold nucleic acid binding domain CH43_2110 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH43_2111 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH43_2112 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH43_2113 PF01171 PP-loop family CH43_2113 PF09179 TilS substrate binding domain CH43_2113 PF11734 TilS substrate C-terminal domain CH43_2114 PF00034 Cytochrome c CH43_2115 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH43_2116 PF06786 Uncharacterised protein family (UPF0253) CH43_2117 PF07152 YaeQ protein CH43_2118 PF00472 RF-1 domain CH43_2119 PF17185 NlpE C-terminal OB domain CH43_2119 PF04170 NlpE N-terminal domain CH43_212 PF03591 AzlC protein CH43_2120 PF04073 Aminoacyl-tRNA editing domain CH43_2120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH43_2120 PF03129 Anticodon binding domain CH43_2121 PF18389 TrmO C-terminal domain CH43_2121 PF01980 tRNA-methyltransferase O CH43_2122 PF16358 RcsF lipoprotein CH43_2123 PF03180 NLPA lipoprotein CH43_2124 PF00528 Binding-protein-dependent transport system inner membrane component CH43_2125 PF00005 ABC transporter CH43_2125 PF09383 NIL domain CH43_213 PF05437 Branched-chain amino acid transport protein (AzlD) CH43_2132 PF00248 Aldo/keto reductase family CH43_2134 PF03372 Endonuclease/Exonuclease/phosphatase family CH43_2135 PF01464 Transglycosylase SLT domain CH43_2135 PF01476 LysM domain CH43_2136 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH43_2136 PF00753 Metallo-beta-lactamase superfamily CH43_2137 PF08241 Methyltransferase domain CH43_2138 PF00075 RNase H CH43_2139 PF00929 Exonuclease CH43_214 PF01047 MarR family CH43_2141 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CH43_2143 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH43_2144 PF00528 Binding-protein-dependent transport system inner membrane component CH43_2145 PF00005 ABC transporter CH43_2145 PF00571 CBS domain CH43_2146 PF00268 Ribonucleotide reductase, small chain CH43_2147 PF08343 Ribonucleotide reductase N-terminal CH43_2147 PF00317 Ribonucleotide reductase, all-alpha domain CH43_2147 PF02867 Ribonucleotide reductase, barrel domain CH43_2148 PF07972 NrdI Flavodoxin like CH43_215 PF00529 HlyD membrane-fusion protein of T1SS CH43_215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH43_2150 PF06392 Acid shock protein repeat CH43_2151 PF09400 Protein of unknown function (DUF2002) CH43_2152 PF06711 Protein of unknown function (DUF1198) CH43_2154 PF00313 'Cold-shock' DNA-binding domain CH43_2155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH43_2156 PF00528 Binding-protein-dependent transport system inner membrane component CH43_2157 PF12911 N-terminal TM domain of oligopeptide transport permease C CH43_2157 PF00528 Binding-protein-dependent transport system inner membrane component CH43_2158 PF00005 ABC transporter CH43_2159 PF00005 ABC transporter CH43_216 PF07690 Major Facilitator Superfamily CH43_2161 PF00547 Urease, gamma subunit CH43_2162 PF00699 Urease beta subunit CH43_2163 PF00449 Urease alpha-subunit, N-terminal domain CH43_2163 PF01979 Amidohydrolase family CH43_2164 PF02814 UreE urease accessory protein, N-terminal domain CH43_2164 PF05194 UreE urease accessory protein, C-terminal domain CH43_2165 PF01730 UreF CH43_2166 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH43_2167 PF01774 UreD urease accessory protein CH43_2168 PF03253 Urea transporter CH43_2169 PF03824 High-affinity nickel-transport protein CH43_217 PF00588 SpoU rRNA Methylase family CH43_217 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH43_2170 PF06411 HdeA/HdeB family CH43_2171 PF07885 Ion channel CH43_2171 PF02254 TrkA-N domain CH43_2172 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH43_2173 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH43_2174 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH43_2175 PF02378 Phosphotransferase system, EIIC CH43_2176 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH43_2177 PF12833 Helix-turn-helix domain CH43_2177 PF07883 Cupin domain CH43_2178 PF04794 YdjC-like protein CH43_218 PF00085 Thioredoxin CH43_2181 PF17206 SeqA protein N-terminal domain CH43_2181 PF03925 SeqA protein C-terminal domain CH43_2182 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH43_2182 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH43_2182 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH43_2182 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH43_2186 PF00486 Transcriptional regulatory protein, C terminal CH43_2186 PF00072 Response regulator receiver domain CH43_2189 PF02669 K+-transporting ATPase, c chain CH43_2191 PF03814 Potassium-transporting ATPase A subunit CH43_2192 PF10725 Protein of unknown function (DUF2517) CH43_2193 PF08349 Protein of unknown function (DUF1722) CH43_2194 PF00875 DNA photolyase CH43_2194 PF03441 FAD binding domain of DNA photolyase CH43_2195 PF02112 cAMP phosphodiesterases class-II CH43_2196 PF01784 NIF3 (NGG1p interacting factor 3) CH43_2198 PF02682 Carboxyltransferase domain, subdomain C and D CH43_2199 PF02626 Carboxyltransferase domain, subdomain A and B CH43_22 PF01797 Transposase IS200 like CH43_220 PF13607 Succinyl-CoA ligase like flavodoxin domain CH43_220 PF13380 CoA binding domain CH43_220 PF00583 Acetyltransferase (GNAT) family CH43_2200 PF03746 LamB/YcsF family CH43_2203 PF01470 Pyroglutamyl peptidase CH43_2204 PF03167 Uracil DNA glycosylase superfamily CH43_2205 PF01228 Glycine radical CH43_2208 PF12796 Ankyrin repeats (3 copies) CH43_221 PF13091 PLD-like domain CH43_2210 PF00270 DEAD/DEAH box helicase CH43_2210 PF00271 Helicase conserved C-terminal domain CH43_2211 PF05175 Methyltransferase small domain CH43_2212 PF00890 FAD binding domain CH43_2212 PF02910 Fumarate reductase flavoprotein C-term CH43_2213 PF04542 Sigma-70 region 2 CH43_2213 PF08281 Sigma-70, region 4 CH43_2214 PF03872 Anti sigma-E protein RseA, N-terminal domain CH43_2214 PF03873 Anti sigma-E protein RseA, C-terminal domain CH43_2215 PF03888 MucB/RseB N-terminal domain CH43_2215 PF17188 MucB/RseB C-terminal domain CH43_2218 PF00679 Elongation factor G C-terminus CH43_2218 PF00009 Elongation factor Tu GTP binding domain CH43_2218 PF03144 Elongation factor Tu domain 2 CH43_2218 PF06421 GTP-binding protein LepA C-terminus CH43_2219 PF10502 Signal peptidase, peptidase S26 CH43_222 PF10043 Predicted periplasmic lipoprotein (DUF2279) CH43_2220 PF14622 Ribonuclease-III-like CH43_2220 PF00035 Double-stranded RNA binding motif CH43_2221 PF01926 50S ribosome-binding GTPase CH43_2221 PF07650 KH domain CH43_2222 PF02565 Recombination protein O C terminal CH43_2222 PF11967 Recombination protein O N terminal CH43_2223 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH43_2224 PF01648 4'-phosphopantetheinyl transferase superfamily CH43_2225 PF01797 Transposase IS200 like CH43_2226 PF00109 Beta-ketoacyl synthase, N-terminal domain CH43_2226 PF02801 Beta-ketoacyl synthase, C-terminal domain CH43_2227 PF01695 IstB-like ATP binding protein CH43_2228 PF02796 Helix-turn-helix domain of resolvase CH43_2228 PF00665 Integrase core domain CH43_2229 PF00109 Beta-ketoacyl synthase, N-terminal domain CH43_2229 PF02801 Beta-ketoacyl synthase, C-terminal domain CH43_2231 PF07977 FabA-like domain CH43_2232 PF13654 AAA domain CH43_2232 PF05362 Lon protease (S16) C-terminal proteolytic domain CH43_2233 PF06303 MatP N-terminal domain CH43_2233 PF17414 MatP C-terminal ribbon-helix-helix domain CH43_2235 PF00691 OmpA family CH43_2235 PF01389 OmpA-like transmembrane domain CH43_2236 PF03846 Cell division inhibitor SulA CH43_2237 PF04993 TfoX N-terminal domain CH43_2237 PF04994 TfoX C-terminal domain CH43_2238 PF12805 FUSC-like inner membrane protein yccS CH43_2239 PF03733 Inner membrane component domain CH43_2240 PF12462 DNA helicase IV / RNA helicase N terminal CH43_2240 PF00580 UvrD/REP helicase N-terminal domain CH43_2240 PF13361 UvrD-like helicase C-terminal domain CH43_2241 PF02142 MGS-like domain CH43_2242 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CH43_2243 PF13380 CoA binding domain CH43_2244 PF08755 Hemimethylated DNA-binding protein YccV like CH43_2245 PF10672 S-adenosylmethionine-dependent methyltransferase CH43_2245 PF17785 PUA-like domain CH43_2246 PF00708 Acylphosphatase CH43_2247 PF04358 DsrC like protein CH43_2249 PF13610 DDE domain CH43_2253 PF01565 FAD binding domain CH43_2253 PF08031 Berberine and berberine like CH43_2256 PF07977 FabA-like domain CH43_2257 PF02801 Beta-ketoacyl synthase, C-terminal domain CH43_2257 PF00109 Beta-ketoacyl synthase, N-terminal domain CH43_2259 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal CH43_2259 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal CH43_2261 PF00378 Enoyl-CoA hydratase/isomerase CH43_2264 PF00550 Phosphopantetheine attachment site CH43_2265 PF00698 Acyl transferase domain CH43_2271 PF05736 OprF membrane domain CH43_2271 PF00691 OmpA family CH43_2273 PF10431 C-terminal, D2-small domain, of ClpB protein CH43_2273 PF00004 ATPase family associated with various cellular activities (AAA) CH43_2273 PF07724 AAA domain (Cdc48 subfamily) CH43_2273 PF17871 AAA lid domain CH43_228 PF01177 Asp/Glu/Hydantoin racemase CH43_229 PF00593 TonB dependent receptor CH43_229 PF07715 TonB-dependent Receptor Plug Domain CH43_2292 PF00005 ABC transporter CH43_2292 PF12848 ABC transporter CH43_2294 PF00899 ThiF family CH43_2295 PF03453 MoeA N-terminal region (domain I and II) CH43_2295 PF03454 MoeA C-terminal region (domain IV) CH43_2295 PF00994 Probable molybdopterin binding domain CH43_2297 PF00005 ABC transporter CH43_2298 PF13533 Biotin-lipoyl like CH43_230 PF05958 tRNA (Uracil-5-)-methyltransferase CH43_2301 PF00756 Putative esterase CH43_2302 PF08240 Alcohol dehydrogenase GroES-like domain CH43_2302 PF00107 Zinc-binding dehydrogenase CH43_2303 PF03466 LysR substrate binding domain CH43_2303 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_2304 PF06779 Uncharacterised MFS-type transporter YbfB CH43_2305 PF01227 GTP cyclohydrolase I CH43_2306 PF04235 Protein of unknown function (DUF418) CH43_2307 PF13407 Periplasmic binding protein domain CH43_2308 PF00005 ABC transporter CH43_2309 PF02653 Branched-chain amino acid transport system / permease component CH43_231 PF07226 Protein of unknown function (DUF1422) CH43_2310 PF01695 IstB-like ATP binding protein CH43_2312 PF00665 Integrase core domain CH43_2312 PF02796 Helix-turn-helix domain of resolvase CH43_2313 PF02653 Branched-chain amino acid transport system / permease component CH43_2314 PF02698 DUF218 domain CH43_2315 PF03949 Malic enzyme, NAD binding domain CH43_2315 PF00390 Malic enzyme, N-terminal domain CH43_2316 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH43_2316 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH43_2317 PF04172 LrgB-like family CH43_2318 PF03788 LrgA family CH43_2319 PF07690 Major Facilitator Superfamily CH43_232 PF00440 Bacterial regulatory proteins, tetR family CH43_2323 PF01797 Transposase IS200 like CH43_2324 PF01588 Putative tRNA binding domain CH43_2324 PF09334 tRNA synthetases class I (M) CH43_2325 PF10609 NUBPL iron-transfer P-loop NTPase CH43_2326 PF00485 Phosphoribulokinase / Uridine kinase family CH43_2327 PF00692 dUTPase CH43_2328 PF05170 AsmA family CH43_2329 PF03471 Transporter associated domain CH43_2329 PF03741 Integral membrane protein TerC family CH43_2329 PF00571 CBS domain CH43_233 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_233 PF03466 LysR substrate binding domain CH43_2330 PF06276 Ferric iron reductase FhuF-like transporter CH43_2330 PF11575 FhuF 2Fe-2S C-terminal domain CH43_2331 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH43_2332 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH43_2334 PF04183 IucA / IucC family CH43_2334 PF06276 Ferric iron reductase FhuF-like transporter CH43_2335 PF00005 ABC transporter CH43_2336 PF01032 FecCD transport family CH43_2337 PF01032 FecCD transport family CH43_2338 PF01497 Periplasmic binding protein CH43_2339 PF00593 TonB dependent receptor CH43_2339 PF07660 Secretin and TonB N terminus short domain CH43_2339 PF07715 TonB-dependent Receptor Plug Domain CH43_234 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH43_234 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH43_2340 PF06276 Ferric iron reductase FhuF-like transporter CH43_2340 PF04183 IucA / IucC family CH43_2341 PF00483 Nucleotidyl transferase CH43_2342 PF00483 Nucleotidyl transferase CH43_2343 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH43_2343 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH43_2344 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH43_2344 PF01502 Phosphoribosyl-AMP cyclohydrolase CH43_2345 PF00977 Histidine biosynthesis protein CH43_2346 PF00977 Histidine biosynthesis protein CH43_2347 PF00117 Glutamine amidotransferase class-I CH43_2348 PF00475 Imidazoleglycerol-phosphate dehydratase CH43_2349 PF00155 Aminotransferase class I and II CH43_235 PF08534 Redoxin CH43_235 PF00462 Glutaredoxin CH43_2350 PF00815 Histidinol dehydrogenase CH43_2351 PF01634 ATP phosphoribosyltransferase CH43_2351 PF08029 HisG, C-terminal domain CH43_2352 PF01370 NAD dependent epimerase/dehydratase family CH43_2354 PF02653 Branched-chain amino acid transport system / permease component CH43_2355 PF00005 ABC transporter CH43_2356 PF00005 ABC transporter CH43_2357 PF00465 Iron-containing alcohol dehydrogenase CH43_2359 PF13520 Amino acid permease CH43_236 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH43_236 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH43_2360 PF08411 Exonuclease C-terminal CH43_2360 PF00929 Exonuclease CH43_2362 PF04363 Protein of unknown function (DUF496) CH43_2363 PF02369 Bacterial Ig-like domain (group 1) CH43_2363 PF11924 Inverse autotransporter, beta-domain CH43_2363 PF09134 Invasin, domain 3 CH43_2364 PF00872 Transposase, Mutator family CH43_2365 PF07690 Major Facilitator Superfamily CH43_2366 PF04134 Protein of unknown function, DUF393 CH43_2368 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH43_2369 PF13378 Enolase C-terminal domain-like CH43_2369 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH43_237 PF03544 Gram-negative bacterial TonB protein C-terminal CH43_2371 PF01070 FMN-dependent dehydrogenase CH43_2372 PF00764 Arginosuccinate synthase CH43_2373 PF01554 MatE CH43_2375 PF01522 Polysaccharide deacetylase CH43_2377 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CH43_2379 PF00196 Bacterial regulatory proteins, luxR family CH43_2379 PF00072 Response regulator receiver domain CH43_238 PF00529 HlyD membrane-fusion protein of T1SS CH43_2380 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH43_2382 PF03480 Bacterial extracellular solute-binding protein, family 7 CH43_2383 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH43_2383 PF01648 4'-phosphopantetheinyl transferase superfamily CH43_2386 PF16874 Glycosyl hydrolase family 36 C-terminal domain CH43_2386 PF16875 Glycosyl hydrolase family 36 N-terminal domain CH43_2387 PF01306 LacY proton/sugar symporter CH43_2388 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH43_2388 PF00356 Bacterial regulatory proteins, lacI family CH43_239 PF00005 ABC transporter CH43_239 PF00664 ABC transporter transmembrane region CH43_2390 PF06167 Glucose-regulated metallo-peptidase M90 CH43_2393 PF01797 Transposase IS200 like CH43_2394 PF00664 ABC transporter transmembrane region CH43_2394 PF00005 ABC transporter CH43_2396 PF12833 Helix-turn-helix domain CH43_2398 PF10964 Protein of unknown function (DUF2766) CH43_2399 PF13996 YobH-like protein CH43_24 PF09190 DALR domain CH43_24 PF01406 tRNA synthetases class I (C) catalytic domain CH43_2400 PF13974 YebO-like protein CH43_2403 PF00324 Amino acid permease CH43_2404 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH43_2406 PF00313 'Cold-shock' DNA-binding domain CH43_2408 PF13847 Methyltransferase domain CH43_241 PF00593 TonB dependent receptor CH43_241 PF07715 TonB-dependent Receptor Plug Domain CH43_2410 PF05231 MASE1 CH43_2410 PF08447 PAS fold CH43_2410 PF00990 Diguanylate cyclase, GGDEF domain CH43_2410 PF13426 PAS domain CH43_2410 PF08448 PAS fold CH43_2410 PF00563 EAL domain CH43_2411 PF00593 TonB dependent receptor CH43_2411 PF07715 TonB-dependent Receptor Plug Domain CH43_2412 PF02659 Putative manganese efflux pump CH43_2413 PF06173 Protein of unknown function (DUF986) CH43_2414 PF03613 PTS system mannose/fructose/sorbose family IID component CH43_2415 PF03609 PTS system sorbose-specific iic component CH43_2416 PF03610 PTS system fructose IIA component CH43_2416 PF03830 PTS system sorbose subfamily IIB component CH43_2417 PF03741 Integral membrane protein TerC family CH43_2417 PF03471 Transporter associated domain CH43_2418 PF01047 MarR family CH43_2419 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH43_2420 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH43_2421 PF00171 Aldehyde dehydrogenase family CH43_2422 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH43_2423 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CH43_2424 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH43_2425 PF03328 HpcH/HpaI aldolase/citrate lyase family CH43_2426 PF07690 Major Facilitator Superfamily CH43_2427 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CH43_2427 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CH43_2428 PF01613 Flavin reductase like domain CH43_2429 PF03313 Serine dehydratase alpha chain CH43_2429 PF03315 Serine dehydratase beta chain CH43_243 PF14698 Argininosuccinate lyase C-terminal CH43_243 PF00206 Lyase CH43_2430 PF00293 NUDIX domain CH43_2431 PF04715 Anthranilate synthase component I, N terminal region CH43_2431 PF00425 chorismate binding enzyme CH43_2432 PF03701 Uncharacterised protein family (UPF0181) CH43_2433 PF02222 ATP-grasp domain CH43_2434 PF03880 DbpA RNA binding domain CH43_2434 PF00271 Helicase conserved C-terminal domain CH43_2434 PF00270 DEAD/DEAH box helicase CH43_2435 PF07130 YebG protein CH43_2437 PF13995 YebF-like protein CH43_2438 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH43_2438 PF00326 Prolyl oligopeptidase family CH43_2439 PF00561 alpha/beta hydrolase fold CH43_244 PF00696 Amino acid kinase family CH43_2440 PF06440 DNA polymerase III, theta subunit CH43_2441 PF00210 Ferritin-like domain CH43_2442 PF04234 CopC domain CH43_2444 PF10709 Protein of unknown function (DUF2511) CH43_2447 PF01312 FlhB HrpN YscU SpaS Family CH43_2448 PF00771 FHIPEP family CH43_2449 PF06366 Flagellar protein FlhE CH43_245 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH43_245 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH43_2450 PF02369 Bacterial Ig-like domain (group 1) CH43_2450 PF07979 Intimin C-type lectin domain CH43_2450 PF09134 Invasin, domain 3 CH43_2450 PF11924 Inverse autotransporter, beta-domain CH43_2452 PF09134 Invasin, domain 3 CH43_2452 PF07979 Intimin C-type lectin domain CH43_2452 PF02369 Bacterial Ig-like domain (group 1) CH43_2452 PF11924 Inverse autotransporter, beta-domain CH43_2453 PF05130 FlgN protein CH43_2454 PF04316 Anti-sigma-28 factor, FlgM CH43_2455 PF13144 Chaperone for flagella basal body P-ring formation CH43_2455 PF17656 FlgA N-terminal domain CH43_2456 PF00460 Flagella basal body rod protein CH43_2457 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH43_2457 PF00460 Flagella basal body rod protein CH43_2458 PF13861 FlgD Tudor-like domain CH43_2458 PF13860 FlgD Ig-like domain CH43_2458 PF03963 Flagellar hook capping protein - N-terminal region CH43_2459 PF00460 Flagella basal body rod protein CH43_2459 PF07559 Flagellar basal body protein FlaE CH43_2459 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH43_246 PF07687 Peptidase dimerisation domain CH43_246 PF01546 Peptidase family M20/M25/M40 CH43_2460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH43_2460 PF00460 Flagella basal body rod protein CH43_2461 PF00460 Flagella basal body rod protein CH43_2461 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH43_2462 PF02107 Flagellar L-ring protein CH43_2463 PF02119 Flagellar P-ring protein CH43_2464 PF10135 Rod binding protein CH43_2464 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH43_2465 PF00460 Flagella basal body rod protein CH43_2465 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH43_2466 PF00669 Bacterial flagellin N-terminal helical region CH43_2467 PF04198 Putative sugar-binding domain CH43_2468 PF00596 Class II Aldolase and Adducin N-terminal domain CH43_2469 PF02653 Branched-chain amino acid transport system / permease component CH43_247 PF00311 Phosphoenolpyruvate carboxylase CH43_2470 PF13407 Periplasmic binding protein domain CH43_2471 PF00005 ABC transporter CH43_2472 PF02653 Branched-chain amino acid transport system / permease component CH43_2473 PF00294 pfkB family carbohydrate kinase CH43_2476 PF01311 Bacterial export proteins, family 1 CH43_2477 PF01313 Bacterial export proteins, family 3 CH43_2478 PF00813 FliP family CH43_2479 PF04347 Flagellar biosynthesis protein, FliO CH43_2480 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH43_2480 PF16973 Flagellar motor switch protein FliN N-terminal CH43_2481 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH43_2481 PF02154 Flagellar motor switch protein FliM CH43_2482 PF03748 Flagellar basal body-associated protein FliL CH43_2483 PF02120 Flagellar hook-length control protein FliK CH43_2484 PF02050 Flagellar FliJ protein CH43_2485 PF18269 T3SS EscN ATPase C-terminal domain CH43_2485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH43_2486 PF02108 Flagellar assembly protein FliH CH43_2487 PF01706 FliG C-terminal domain CH43_2487 PF14841 FliG middle domain CH43_2487 PF14842 FliG N-terminal domain CH43_2488 PF08345 Flagellar M-ring protein C-terminal CH43_2488 PF01514 Secretory protein of YscJ/FliF family CH43_2489 PF02049 Flagellar hook-basal body complex protein FliE CH43_249 PF13333 Integrase core domain CH43_249 PF00665 Integrase core domain CH43_249 PF13276 HTH-like domain CH43_2492 PF00730 HhH-GPD superfamily base excision DNA repair protein CH43_2493 PF01966 HD domain CH43_2494 PF12833 Helix-turn-helix domain CH43_2495 PF05400 Flagellar protein FliT CH43_2496 PF02561 Flagellar protein FliS CH43_2497 PF07196 Flagellin hook IN motif CH43_2497 PF02465 Flagellar hook-associated protein 2 N-terminus CH43_2497 PF07195 Flagellar hook-associated protein 2 C-terminus CH43_2498 PF00700 Bacterial flagellin C-terminal helical region CH43_2498 PF08884 Flagellin D3 domain CH43_2498 PF00669 Bacterial flagellin N-terminal helical region CH43_2499 PF04542 Sigma-70 region 2 CH43_2499 PF04539 Sigma-70 region 3 CH43_2499 PF04545 Sigma-70, region 4 CH43_25 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH43_250 PF00312 Ribosomal protein S15 CH43_2500 PF02899 Phage integrase, N-terminal SAM-like domain CH43_2501 PF00291 Pyridoxal-phosphate dependent enzyme CH43_2508 PF01619 Proline dehydrogenase CH43_2508 PF00171 Aldehyde dehydrogenase family CH43_2508 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH43_2508 PF14850 DNA-binding domain of Proline dehydrogenase CH43_251 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH43_251 PF09157 Pseudouridine synthase II TruB, C-terminal CH43_251 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH43_2510 PF00474 Sodium:solute symporter family CH43_2511 PF03239 Iron permease FTR1 family CH43_2512 PF09375 Imelysin CH43_2512 PF13473 Cupredoxin-like domain CH43_2513 PF04261 Dyp-type peroxidase family CH43_2514 PF03358 NADPH-dependent FMN reductase CH43_2515 PF01344 Kelch motif CH43_2516 PF00324 Amino acid permease CH43_2518 PF13505 Outer membrane protein beta-barrel domain CH43_252 PF02033 Ribosome-binding factor A CH43_2520 PF06942 GlpM protein CH43_2521 PF10769 Protein of unknown function (DUF2594) CH43_2522 PF00196 Bacterial regulatory proteins, luxR family CH43_2522 PF00072 Response regulator receiver domain CH43_2523 PF08459 UvrC Helix-hairpin-helix N-terminal CH43_2523 PF01541 GIY-YIG catalytic domain CH43_2523 PF02151 UvrB/uvrC motif CH43_2524 PF01066 CDP-alcohol phosphatidyltransferase CH43_253 PF00009 Elongation factor Tu GTP binding domain CH43_253 PF03144 Elongation factor Tu domain 2 CH43_253 PF04760 Translation initiation factor IF-2, N-terminal region CH43_253 PF11987 Translation-initiation factor 2 CH43_253 PF08364 Bacterial translation initiation factor IF-2 associated region CH43_2533 PF05638 Type VI secretion system effector, Hcp CH43_254 PF08529 NusA N-terminal domain CH43_254 PF13184 NusA-like KH domain CH43_254 PF00575 S1 RNA binding domain CH43_2545 PF00872 Transposase, Mutator family CH43_2546 PF00872 Transposase, Mutator family CH43_255 PF17384 RimP C-terminal SH3 domain CH43_255 PF02576 RimP N-terminal domain CH43_2553 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH43_2553 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH43_2554 PF01547 Bacterial extracellular solute-binding protein CH43_2555 PF00528 Binding-protein-dependent transport system inner membrane component CH43_2556 PF00528 Binding-protein-dependent transport system inner membrane component CH43_2557 PF08402 TOBE domain CH43_2557 PF00005 ABC transporter CH43_2560 PF00665 Integrase core domain CH43_2560 PF02796 Helix-turn-helix domain of resolvase CH43_2561 PF01695 IstB-like ATP binding protein CH43_2569 PF07715 TonB-dependent Receptor Plug Domain CH43_2569 PF00593 TonB dependent receptor CH43_2570 PF13193 AMP-binding enzyme C-terminal domain CH43_2570 PF00501 AMP-binding enzyme CH43_2571 PF00975 Thioesterase domain CH43_2573 PF00698 Acyl transferase domain CH43_2573 PF00668 Condensation domain CH43_2573 PF00109 Beta-ketoacyl synthase, N-terminal domain CH43_2573 PF02801 Beta-ketoacyl synthase, C-terminal domain CH43_2573 PF00550 Phosphopantetheine attachment site CH43_2573 PF16197 Ketoacyl-synthetase C-terminal extension CH43_2574 PF00668 Condensation domain CH43_2574 PF00501 AMP-binding enzyme CH43_2574 PF08242 Methyltransferase domain CH43_2574 PF00550 Phosphopantetheine attachment site CH43_2576 PF04954 Siderophore-interacting protein CH43_2576 PF00664 ABC transporter transmembrane region CH43_2576 PF00005 ABC transporter CH43_2576 PF08021 Siderophore-interacting FAD-binding domain CH43_2577 PF00664 ABC transporter transmembrane region CH43_2577 PF00005 ABC transporter CH43_2578 PF07690 Major Facilitator Superfamily CH43_2579 PF00425 chorismate binding enzyme CH43_258 PF03840 Preprotein translocase SecG subunit CH43_2580 PF00589 Phage integrase family CH43_2580 PF13356 Arm DNA-binding domain CH43_2583 PF00872 Transposase, Mutator family CH43_2584 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH43_2584 PF02753 Pili assembly chaperone PapD, C-terminal domain CH43_2586 PF00577 Outer membrane usher protein CH43_2586 PF13954 PapC N-terminal domain CH43_2586 PF13953 PapC C-terminal domain CH43_2587 PF02753 Pili assembly chaperone PapD, C-terminal domain CH43_2587 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH43_2589 PF00989 PAS fold CH43_2589 PF01627 Hpt domain CH43_2589 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH43_2589 PF00512 His Kinase A (phospho-acceptor) domain CH43_2589 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_2589 PF00072 Response regulator receiver domain CH43_259 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH43_259 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH43_259 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH43_259 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH43_2590 PF00072 Response regulator receiver domain CH43_2590 PF00196 Bacterial regulatory proteins, luxR family CH43_2592 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CH43_2592 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CH43_2593 PF01575 MaoC like domain CH43_2594 PF03328 HpcH/HpaI aldolase/citrate lyase family CH43_2595 PF03466 LysR substrate binding domain CH43_2595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_2599 PF04909 Amidohydrolase CH43_26 PF00149 Calcineurin-like phosphoesterase CH43_260 PF00809 Pterin binding enzyme CH43_2601 PF02508 Rnf-Nqr subunit, membrane protein CH43_2602 PF00155 Aminotransferase class I and II CH43_2603 PF00324 Amino acid permease CH43_2604 PF08220 DeoR-like helix-turn-helix domain CH43_2604 PF00455 DeoR C terminal sensor domain CH43_2605 PF04960 Glutaminase CH43_2609 PF10634 Fe2+ transport protein CH43_261 PF00004 ATPase family associated with various cellular activities (AAA) CH43_261 PF06480 FtsH Extracellular CH43_261 PF01434 Peptidase family M41 CH43_261 PF17862 AAA+ lid domain CH43_2611 PF12704 MacB-like periplasmic core domain CH43_2611 PF02687 FtsX-like permease family CH43_2611 PF00005 ABC transporter CH43_2613 PF00005 ABC transporter CH43_2613 PF12704 MacB-like periplasmic core domain CH43_2613 PF02687 FtsX-like permease family CH43_2614 PF00578 AhpC/TSA family CH43_2616 PF09313 Domain of unknown function (DUF1971) CH43_2616 PF03848 Tellurite resistance protein TehB CH43_2617 PF00557 Metallopeptidase family M24 CH43_2619 PF14883 Hypothetical glycosyl hydrolase family 13 CH43_2619 PF01522 Polysaccharide deacetylase CH43_262 PF01728 FtsJ-like methyltransferase CH43_2620 PF00535 Glycosyl transferase family 2 CH43_2621 PF13994 PgaD-like protein CH43_2624 PF02562 PhoH-like protein CH43_2625 PF01699 Sodium/calcium exchanger protein CH43_2627 PF00672 HAMP domain CH43_2627 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CH43_2627 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_2627 PF07730 Histidine kinase CH43_2628 PF00155 Aminotransferase class I and II CH43_2628 PF00392 Bacterial regulatory proteins, gntR family CH43_263 PF01985 CRS1 / YhbY (CRM) domain CH43_2631 PF00202 Aminotransferase class-III CH43_2632 PF04958 Arginine N-succinyltransferase beta subunit CH43_2633 PF00171 Aldehyde dehydrogenase family CH43_2634 PF04996 Succinylarginine dihydrolase CH43_2635 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CH43_2636 PF00267 Gram-negative porin CH43_2637 PF00872 Transposase, Mutator family CH43_2638 PF00872 Transposase, Mutator family CH43_264 PF03449 Transcription elongation factor, N-terminal CH43_264 PF01272 Transcription elongation factor, GreA/GreB, C-term CH43_2640 PF01695 IstB-like ATP binding protein CH43_2641 PF01695 IstB-like ATP binding protein CH43_2642 PF00665 Integrase core domain CH43_2642 PF02796 Helix-turn-helix domain of resolvase CH43_2643 PF01979 Amidohydrolase family CH43_2644 PF00392 Bacterial regulatory proteins, gntR family CH43_2644 PF07702 UTRA domain CH43_2645 PF01979 Amidohydrolase family CH43_2646 PF05962 HutD CH43_2648 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH43_2648 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH43_2649 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH43_2649 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH43_265 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH43_2650 PF01370 NAD dependent epimerase/dehydratase family CH43_2659 PF00872 Transposase, Mutator family CH43_266 PF00486 Transcriptional regulatory protein, C terminal CH43_266 PF00072 Response regulator receiver domain CH43_2664 PF08242 Methyltransferase domain CH43_267 PF00512 His Kinase A (phospho-acceptor) domain CH43_267 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_267 PF00672 HAMP domain CH43_2673 PF00512 His Kinase A (phospho-acceptor) domain CH43_2673 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_2673 PF00672 HAMP domain CH43_2674 PF00072 Response regulator receiver domain CH43_2674 PF00486 Transcriptional regulatory protein, C terminal CH43_2675 PF01695 IstB-like ATP binding protein CH43_2676 PF00665 Integrase core domain CH43_2676 PF02796 Helix-turn-helix domain of resolvase CH43_2677 PF00486 Transcriptional regulatory protein, C terminal CH43_2677 PF00072 Response regulator receiver domain CH43_2678 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CH43_268 PF01018 GTP1/OBG CH43_268 PF01926 50S ribosome-binding GTPase CH43_2687 PF01926 50S ribosome-binding GTPase CH43_2687 PF06071 Protein of unknown function (DUF933) CH43_2688 PF01195 Peptidyl-tRNA hydrolase CH43_2689 PF10762 Protein of unknown function (DUF2583) CH43_269 PF00892 EamA-like transporter family CH43_2690 PF14572 Phosphoribosyl synthetase-associated domain CH43_2690 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH43_2691 PF00288 GHMP kinases N terminal domain CH43_2691 PF08544 GHMP kinases C terminal CH43_2692 PF03550 Outer membrane lipoprotein LolB CH43_2693 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH43_2693 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH43_2693 PF01488 Shikimate / quinate 5-dehydrogenase CH43_2694 PF03462 PCRF domain CH43_2694 PF00472 RF-1 domain CH43_2695 PF13847 Methyltransferase domain CH43_2695 PF17827 PrmC N-terminal domain CH43_2696 PF04247 Invasion gene expression up-regulator, SirB CH43_2697 PF13369 Transglutaminase-like superfamily CH43_2698 PF00793 DAHP synthetase I family CH43_2699 PF00916 Sulfate permease family CH43_2699 PF01740 STAS domain CH43_27 PF00731 AIR carboxylase CH43_270 PF01016 Ribosomal L27 protein CH43_2701 PF03009 Glycerophosphoryl diester phosphodiesterase family CH43_2703 PF00528 Binding-protein-dependent transport system inner membrane component CH43_2704 PF00528 Binding-protein-dependent transport system inner membrane component CH43_2705 PF00005 ABC transporter CH43_2705 PF08402 TOBE domain CH43_2707 PF08402 TOBE domain CH43_2707 PF00005 ABC transporter CH43_2708 PF03009 Glycerophosphoryl diester phosphodiesterase family CH43_2709 PF00480 ROK family CH43_2709 PF01325 Iron dependent repressor, N-terminal DNA binding domain CH43_271 PF00829 Ribosomal prokaryotic L21 protein CH43_2711 PF02811 PHP domain CH43_2712 PF02613 Nitrate reductase delta subunit CH43_2713 PF07273 Protein of unknown function (DUF1439) CH43_2714 PF07690 Major Facilitator Superfamily CH43_2715 PF13302 Acetyltransferase (GNAT) domain CH43_2716 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH43_2717 PF03023 Lipid II flippase MurJ CH43_2718 PF08479 POTRA domain, ShlB-type CH43_2718 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH43_2718 PF17287 POTRA domain CH43_2719 PF13332 Hemagglutinin repeat CH43_2719 PF05860 haemagglutination activity domain CH43_272 PF00348 Polyprenyl synthetase CH43_2720 PF05746 DALR anticodon binding domain CH43_2720 PF03485 Arginyl tRNA synthetase N terminal domain CH43_2720 PF00750 tRNA synthetases class I (R) CH43_2721 PF06185 YecM protein CH43_2722 PF03932 CutC family CH43_2723 PF08003 Protein of unknown function (DUF1698) CH43_2724 PF13649 Methyltransferase domain CH43_2725 PF01124 MAPEG family CH43_2726 PF01904 Protein of unknown function DUF72 CH43_2727 PF00152 tRNA synthetases class II (D, K and N) CH43_2727 PF02938 GAD domain CH43_2727 PF01336 OB-fold nucleic acid binding domain CH43_2728 PF00293 NUDIX domain CH43_2729 PF01709 Transcriptional regulator CH43_2730 PF02075 Crossover junction endodeoxyribonuclease RuvC CH43_2731 PF07499 RuvA, C-terminal domain CH43_2731 PF01330 RuvA N terminal domain CH43_2732 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH43_2732 PF05491 RuvB C-terminal winged helix domain CH43_2732 PF17864 RuvB AAA lid domain CH43_2733 PF00950 ABC 3 transport family CH43_2734 PF00005 ABC transporter CH43_2735 PF01297 Zinc-uptake complex component A periplasmic CH43_2736 PF01476 LysM domain CH43_2736 PF08525 Opacity-associated protein A N-terminal motif CH43_2736 PF01551 Peptidase family M23 CH43_2737 PF03279 Bacterial lipid A biosynthesis acyltransferase CH43_2738 PF02887 Pyruvate kinase, alpha/beta domain CH43_2738 PF00224 Pyruvate kinase, barrel domain CH43_2739 PF01418 Helix-turn-helix domain, rpiR family CH43_2739 PF01380 SIS domain CH43_274 PF13693 Winged helix-turn-helix DNA-binding CH43_2740 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH43_2740 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH43_2742 PF01081 KDPG and KHG aldolase CH43_2743 PF00893 Small Multidrug Resistance protein CH43_2744 PF00893 Small Multidrug Resistance protein CH43_2745 PF01042 Endoribonuclease L-PSP CH43_2746 PF13307 Helicase C-terminal domain CH43_2746 PF04851 Type III restriction enzyme, res subunit CH43_2747 PF00814 Glycoprotease family CH43_2748 PF03843 Outer membrane lipoprotein Slp family CH43_2749 PF00501 AMP-binding enzyme CH43_2749 PF13193 AMP-binding enzyme C-terminal domain CH43_275 PF00056 lactate/malate dehydrogenase, NAD binding domain CH43_275 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH43_2750 PF01612 3'-5' exonuclease CH43_2750 PF00570 HRDC domain CH43_2751 PF03776 Septum formation topological specificity factor MinE CH43_2752 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH43_2753 PF05209 Septum formation inhibitor MinC, N-terminal domain CH43_2753 PF03775 Septum formation inhibitor MinC, C-terminal domain CH43_2754 PF05166 YcgL domain CH43_2755 PF13406 Transglycosylase SLT domain CH43_2756 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH43_2757 PF03692 Putative zinc- or iron-chelating domain CH43_2758 PF12167 Arm DNA-binding domain CH43_2758 PF00589 Phage integrase family CH43_2759 PF02796 Helix-turn-helix domain of resolvase CH43_2759 PF00665 Integrase core domain CH43_276 PF02863 Arginine repressor, C-terminal domain CH43_276 PF01316 Arginine repressor, DNA binding domain CH43_2760 PF01695 IstB-like ATP binding protein CH43_2763 PF05772 NinB protein CH43_2765 PF06530 Phage antitermination protein Q CH43_278 PF01225 Mur ligase family, catalytic domain CH43_278 PF02875 Mur ligase family, glutamate ligase domain CH43_278 PF08245 Mur ligase middle domain CH43_279 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH43_2793 PF01797 Transposase IS200 like CH43_28 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH43_28 PF02222 ATP-grasp domain CH43_280 PF00719 Inorganic pyrophosphatase CH43_2809 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH43_281 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CH43_2811 PF00266 Aminotransferase class-V CH43_2814 PF02600 Disulfide bond formation protein DsbB CH43_2815 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CH43_2816 PF07840 FadR C-terminal domain CH43_2816 PF00392 Bacterial regulatory proteins, gntR family CH43_2817 PF04293 SpoVR like protein CH43_2818 PF01266 FAD dependent oxidoreductase CH43_2819 PF07690 Major Facilitator Superfamily CH43_282 PF04357 TamB, inner membrane protein subunit of TAM complex CH43_2820 PF05726 Pirin C-terminal cupin domain CH43_2820 PF02678 Pirin CH43_2821 PF03466 LysR substrate binding domain CH43_2821 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_2823 PF04285 Protein of unknown function (DUF444) CH43_2824 PF08298 PrkA AAA domain CH43_2824 PF06798 PrkA serine protein kinase C-terminal domain CH43_2825 PF06629 MltA-interacting protein MipA CH43_2826 PF01263 Aldose 1-epimerase CH43_2827 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH43_2827 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH43_2828 PF01641 SelR domain CH43_2829 PF07023 Protein of unknown function (DUF1315) CH43_283 PF01103 Surface antigen CH43_283 PF17243 POTRA domain TamA domain 1 CH43_283 PF07244 Surface antigen variable number repeat CH43_2830 PF00857 Isochorismatase family CH43_2831 PF00710 Asparaginase, N-terminal CH43_2831 PF17763 Glutaminase/Asparaginase C-terminal domain CH43_2832 PF01343 Peptidase family S49 CH43_2833 PF00881 Nitroreductase family CH43_2834 PF02769 AIR synthase related protein, C-terminal domain CH43_2834 PF00586 AIR synthase related protein, N-terminal domain CH43_2835 PF01131 DNA topoisomerase CH43_2835 PF01751 Toprim domain CH43_2836 PF07383 Protein of unknown function (DUF1496) CH43_2837 PF00293 NUDIX domain CH43_2838 PF03372 Endonuclease/Exonuclease/phosphatase family CH43_2839 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_2839 PF03466 LysR substrate binding domain CH43_284 PF01625 Peptide methionine sulfoxide reductase CH43_2840 PF00872 Transposase, Mutator family CH43_2844 PF01842 ACT domain CH43_2844 PF00551 Formyl transferase CH43_2845 PF02810 SEC-C motif CH43_2846 PF00072 Response regulator receiver domain CH43_2847 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH43_2847 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH43_2847 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH43_2848 PF00872 Transposase, Mutator family CH43_2849 PF00816 H-NS histone family CH43_285 PF01595 Cyclin M transmembrane N-terminal domain CH43_285 PF03471 Transporter associated domain CH43_285 PF00571 CBS domain CH43_2850 PF00265 Thymidine kinase CH43_2851 PF00171 Aldehyde dehydrogenase family CH43_2851 PF00465 Iron-containing alcohol dehydrogenase CH43_2852 PF01914 MarC family integral membrane protein CH43_2853 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH43_2854 PF00528 Binding-protein-dependent transport system inner membrane component CH43_2855 PF00528 Binding-protein-dependent transport system inner membrane component CH43_2855 PF12911 N-terminal TM domain of oligopeptide transport permease C CH43_2856 PF00005 ABC transporter CH43_2856 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH43_2857 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH43_2857 PF00005 ABC transporter CH43_2859 PF04269 Protein of unknown function, DUF440 CH43_286 PF06526 Protein of unknown function (DUF1107) CH43_2860 PF13091 PLD-like domain CH43_2860 PF13396 Phospholipase_D-nuclease N-terminal CH43_2861 PF13505 Outer membrane protein beta-barrel domain CH43_2864 PF03795 YCII-related domain CH43_2866 PF03544 Gram-negative bacterial TonB protein C-terminal CH43_2867 PF00872 Transposase, Mutator family CH43_2868 PF03061 Thioesterase superfamily CH43_2869 PF04279 Intracellular septation protein A CH43_287 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CH43_2873 PF03922 OmpW family CH43_2875 PF00290 Tryptophan synthase alpha chain CH43_2876 PF00291 Pyridoxal-phosphate dependent enzyme CH43_2877 PF00218 Indole-3-glycerol phosphate synthase CH43_2877 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH43_2878 PF02885 Glycosyl transferase family, helical bundle domain CH43_2878 PF00591 Glycosyl transferase family, a/b domain CH43_2879 PF00117 Glutamine amidotransferase class-I CH43_288 PF00459 Inositol monophosphatase family CH43_2880 PF04715 Anthranilate synthase component I, N terminal region CH43_2880 PF00425 chorismate binding enzyme CH43_2881 PF02811 PHP domain CH43_2882 PF01300 Telomere recombination CH43_2883 PF01479 S4 domain CH43_2883 PF00849 RNA pseudouridylate synthase CH43_2884 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH43_2885 PF00106 short chain dehydrogenase CH43_2886 PF01343 Peptidase family S49 CH43_2886 PF08496 Peptidase family S49 N-terminal CH43_2887 PF10692 Protein of unknown function (DUF2498) CH43_2889 PF08272 Topoisomerase I zinc-ribbon-like CH43_2889 PF01131 DNA topoisomerase CH43_2889 PF01751 Toprim domain CH43_2889 PF01396 Topoisomerase DNA binding C4 zinc finger CH43_289 PF00149 Calcineurin-like phosphoesterase CH43_289 PF02872 5'-nucleotidase, C-terminal domain CH43_2890 PF01797 Transposase IS200 like CH43_2891 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_2891 PF03466 LysR substrate binding domain CH43_2893 PF00330 Aconitase family (aconitate hydratase) CH43_2893 PF00694 Aconitase C-terminal domain CH43_2894 PF00925 GTP cyclohydrolase II CH43_2895 PF01569 PAP2 superfamily CH43_2896 PF06305 Lipopolysaccharide assembly protein A domain CH43_2897 PF18073 Rubredoxin metal binding domain CH43_2899 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH43_290 PF01814 Hemerythrin HHE cation binding domain CH43_290 PF04405 Domain of Unknown function (DUF542) CH43_2900 PF01253 Translation initiation factor SUI1 CH43_2902 PF00596 Class II Aldolase and Adducin N-terminal domain CH43_2904 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH43_2905 PF04328 Selenoprotein, putative CH43_2906 PF02554 Carbon starvation protein CstA CH43_2906 PF13722 5TM C-terminal transporter carbon starvation CstA CH43_2907 PF08206 Ribonuclease B OB domain CH43_2907 PF00773 RNB domain CH43_2907 PF17876 Cold shock domain CH43_2907 PF00575 S1 RNA binding domain CH43_2908 PF07690 Major Facilitator Superfamily CH43_2909 PF01370 NAD dependent epimerase/dehydratase family CH43_291 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH43_291 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH43_2910 PF00730 HhH-GPD superfamily base excision DNA repair protein CH43_2910 PF00633 Helix-hairpin-helix motif CH43_2910 PF10576 Iron-sulfur binding domain of endonuclease III CH43_2911 PF02508 Rnf-Nqr subunit, membrane protein CH43_2912 PF04205 FMN-binding domain CH43_2913 PF03116 NQR2, RnfD, RnfE family CH43_2914 PF12833 Helix-turn-helix domain CH43_2914 PF06445 GyrI-like small molecule binding domain CH43_2915 PF13237 4Fe-4S dicluster domain CH43_2915 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH43_2915 PF13375 RnfC Barrel sandwich hybrid domain CH43_2915 PF10531 SLBB domain CH43_2916 PF04060 Putative Fe-S cluster CH43_2917 PF02508 Rnf-Nqr subunit, membrane protein CH43_2918 PF10754 Protein of unknown function (DUF2569) CH43_2919 PF00664 ABC transporter transmembrane region CH43_2919 PF00005 ABC transporter CH43_2919 PF03412 Peptidase C39 family CH43_292 PF08525 Opacity-associated protein A N-terminal motif CH43_292 PF04225 Opacity-associated protein A LysM-like domain CH43_2920 PF00005 ABC transporter CH43_2920 PF00664 ABC transporter transmembrane region CH43_2921 PF13533 Biotin-lipoyl like CH43_2923 PF03412 Peptidase C39 family CH43_2923 PF00664 ABC transporter transmembrane region CH43_2923 PF00005 ABC transporter CH43_2925 PF02610 L-arabinose isomerase CH43_2925 PF11762 L-arabinose isomerase C-terminal domain CH43_2926 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH43_2927 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH43_2928 PF00005 ABC transporter CH43_2931 PF12833 Helix-turn-helix domain CH43_2931 PF02311 AraC-like ligand binding domain CH43_2932 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH43_2932 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH43_2933 PF13593 SBF-like CPA transporter family (DUF4137) CH43_2935 PF06097 Bacterial protein of unknown function (DUF945) CH43_2936 PF01238 Phosphomannose isomerase type I CH43_2937 PF00206 Lyase CH43_2937 PF10415 Fumarase C C-terminus CH43_2938 PF05472 DNA replication terminus site-binding protein (Ter protein) CH43_2939 PF07690 Major Facilitator Superfamily CH43_294 PF01797 Transposase IS200 like CH43_2940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_2940 PF03466 LysR substrate binding domain CH43_2941 PF00480 ROK family CH43_2944 PF00654 Voltage gated chloride channel CH43_2945 PF06649 Protein of unknown function (DUF1161) CH43_2946 PF00356 Bacterial regulatory proteins, lacI family CH43_2948 PF13407 Periplasmic binding protein domain CH43_2949 PF09084 NMT1/THI5 like CH43_295 PF01281 Ribosomal protein L9, N-terminal domain CH43_295 PF03948 Ribosomal protein L9, C-terminal domain CH43_2950 PF00528 Binding-protein-dependent transport system inner membrane component CH43_2951 PF00005 ABC transporter CH43_2952 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH43_2952 PF01048 Phosphorylase superfamily CH43_2958 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH43_2958 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH43_2958 PF00205 Thiamine pyrophosphate enzyme, central domain CH43_2959 PF01842 ACT domain CH43_296 PF01084 Ribosomal protein S18 CH43_2960 PF13419 Haloacid dehalogenase-like hydrolase CH43_2962 PF00245 Alkaline phosphatase CH43_2963 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH43_2963 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH43_2964 PF13545 Crp-like helix-turn-helix domain CH43_2964 PF00027 Cyclic nucleotide-binding domain CH43_2965 PF00582 Universal stress protein family CH43_2966 PF02233 NAD(P) transhydrogenase beta subunit CH43_2967 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH43_2967 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH43_2967 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH43_2968 PF07338 Protein of unknown function (DUF1471) CH43_2969 PF13520 Amino acid permease CH43_297 PF01250 Ribosomal protein S6 CH43_2971 PF00486 Transcriptional regulatory protein, C terminal CH43_2971 PF00072 Response regulator receiver domain CH43_2972 PF00672 HAMP domain CH43_2972 PF00512 His Kinase A (phospho-acceptor) domain CH43_2972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_2973 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH43_2975 PF18807 Tripartite Tc toxins repeat CH43_2975 PF14431 YwqJ-like deaminase CH43_2977 PF04264 YceI-like domain CH43_2978 PF01292 Prokaryotic cytochrome b561 CH43_2980 PF00089 Trypsin CH43_2983 PF00270 DEAD/DEAH box helicase CH43_2983 PF11898 Domain of unknown function (DUF3418) CH43_2983 PF04408 Helicase associated domain (HA2) CH43_2983 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH43_2983 PF00271 Helicase conserved C-terminal domain CH43_2984 PF02525 Flavodoxin-like fold CH43_2985 PF00325 Bacterial regulatory proteins, crp family CH43_2985 PF04198 Putative sugar-binding domain CH43_2986 PF01232 Mannitol dehydrogenase Rossmann domain CH43_2986 PF08125 Mannitol dehydrogenase C-terminal domain CH43_2987 PF07027 Protein of unknown function (DUF1318) CH43_2988 PF13617 YnbE-like lipoprotein CH43_2989 PF11739 Dicarboxylate transport CH43_299 PF00326 Prolyl oligopeptidase family CH43_2990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH43_2990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH43_2991 PF03724 META domain CH43_2992 PF03891 Domain of unknown function (DUF333) CH43_2993 PF02308 MgtC family CH43_2994 PF00893 Small Multidrug Resistance protein CH43_2995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH43_2995 PF10371 Domain of unknown function CH43_2995 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CH43_2995 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH43_2995 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH43_2996 PF01171 PP-loop family CH43_2998 PF13472 GDSL-like Lipase/Acylhydrolase family CH43_2998 PF07859 alpha/beta hydrolase fold CH43_3 PF00248 Aldo/keto reductase family CH43_30 PF00005 ABC transporter CH43_300 PF01695 IstB-like ATP binding protein CH43_3000 PF01544 CorA-like Mg2+ transporter protein CH43_3001 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH43_3002 PF00246 Zinc carboxypeptidase CH43_3003 PF13378 Enolase C-terminal domain-like CH43_3003 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH43_3004 PF08534 Redoxin CH43_3005 PF00665 Integrase core domain CH43_3005 PF02796 Helix-turn-helix domain of resolvase CH43_3006 PF01695 IstB-like ATP binding protein CH43_3008 PF00158 Sigma-54 interaction domain CH43_3008 PF18024 Helix-turn-helix domain CH43_301 PF02796 Helix-turn-helix domain of resolvase CH43_301 PF00665 Integrase core domain CH43_3011 PF05128 Domain of unknown function (DUF697) CH43_3012 PF04317 YcjX-like family, DUF463 CH43_3014 PF04024 PspC domain CH43_3015 PF06667 Phage shock protein B CH43_3016 PF04012 PspA/IM30 family CH43_3017 PF00158 Sigma-54 interaction domain CH43_3017 PF02954 Bacterial regulatory protein, Fis family CH43_3018 PF01797 Transposase IS200 like CH43_3019 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH43_302 PF13673 Acetyltransferase (GNAT) domain CH43_3020 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3021 PF12911 N-terminal TM domain of oligopeptide transport permease C CH43_3021 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3022 PF00005 ABC transporter CH43_3022 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH43_3023 PF00005 ABC transporter CH43_3026 PF00854 POT family CH43_3027 PF04893 Yip1 domain CH43_3028 PF11656 YjbD family (DUF3811) CH43_3029 PF02798 Glutathione S-transferase, N-terminal domain CH43_3029 PF00043 Glutathione S-transferase, C-terminal domain CH43_303 PF00485 Phosphoribulokinase / Uridine kinase family CH43_3030 PF08543 Phosphomethylpyrimidine kinase CH43_3031 PF00579 tRNA synthetases class I (W and Y) CH43_3031 PF01479 S4 domain CH43_3032 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH43_3032 PF01243 Pyridoxamine 5'-phosphate oxidase CH43_3033 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH43_3034 PF03702 Anhydro-N-acetylmuramic acid kinase CH43_3035 PF05433 Glycine zipper 2TM domain CH43_3036 PF01047 MarR family CH43_3037 PF00248 Aldo/keto reductase family CH43_3038 PF06945 Protein of unknown function (DUF1289) CH43_3039 PF08019 Phosphoethanolamine transferase EptA/EptB CH43_3039 PF00884 Sulfatase CH43_304 PF08279 HTH domain CH43_304 PF02237 Biotin protein ligase C terminal domain CH43_304 PF03099 Biotin/lipoate A/B protein ligase family CH43_3040 PF00440 Bacterial regulatory proteins, tetR family CH43_3040 PF16925 Tetracyclin repressor-like, C-terminal domain CH43_3041 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH43_3042 PF14431 YwqJ-like deaminase CH43_3042 PF18807 Tripartite Tc toxins repeat CH43_3043 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH43_3044 PF00929 Exonuclease CH43_3045 PF00462 Glutaredoxin CH43_3047 PF00877 NlpC/P60 family CH43_3048 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH43_3048 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH43_305 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH43_305 PF01565 FAD binding domain CH43_3050 PF00356 Bacterial regulatory proteins, lacI family CH43_3051 PF03466 LysR substrate binding domain CH43_3051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_3052 PF07690 Major Facilitator Superfamily CH43_3054 PF00677 Lumazine binding domain CH43_3055 PF01554 MatE CH43_3058 PF02887 Pyruvate kinase, alpha/beta domain CH43_3058 PF00224 Pyruvate kinase, barrel domain CH43_3059 PF04728 Lipoprotein leucine-zipper CH43_3061 PF02796 Helix-turn-helix domain of resolvase CH43_3061 PF00665 Integrase core domain CH43_3063 PF01695 IstB-like ATP binding protein CH43_3064 PF03734 L,D-transpeptidase catalytic domain CH43_3064 PF17969 L,D-transpeptidase C-terminal domain CH43_3064 PF01476 LysM domain CH43_3065 PF02657 Fe-S metabolism associated domain CH43_3066 PF00266 Aminotransferase class-V CH43_3067 PF01458 Uncharacterized protein family (UPF0051) CH43_3068 PF00005 ABC transporter CH43_3069 PF01458 Uncharacterized protein family (UPF0051) CH43_3070 PF01521 Iron-sulphur cluster biosynthesis CH43_3071 PF03061 Thioesterase superfamily CH43_3072 PF01565 FAD binding domain CH43_3072 PF02913 FAD linked oxidases, C-terminal domain CH43_3072 PF13183 4Fe-4S dicluster domain CH43_3073 PF01594 AI-2E family transporter CH43_3074 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH43_3074 PF02896 PEP-utilising enzyme, TIM barrel domain CH43_3074 PF00391 PEP-utilising enzyme, mobile domain CH43_3075 PF03618 Kinase/pyrophosphorylase CH43_3076 PF00793 DAHP synthetase I family CH43_3077 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH43_3078 PF10437 Bacterial lipoate protein ligase C-terminus CH43_3078 PF03099 Biotin/lipoate A/B protein ligase family CH43_3079 PF00877 NlpC/P60 family CH43_3081 PF00892 EamA-like transporter family CH43_3082 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CH43_3083 PF01522 Polysaccharide deacetylase CH43_3084 PF02911 Formyl transferase, C-terminal domain CH43_3084 PF00551 Formyl transferase CH43_3084 PF01370 NAD dependent epimerase/dehydratase family CH43_3085 PF00535 Glycosyl transferase family 2 CH43_3086 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH43_3087 PF00005 ABC transporter CH43_3088 PF00255 Glutathione peroxidase CH43_3089 PF01032 FecCD transport family CH43_3091 PF00216 Bacterial DNA-binding protein CH43_3092 PF01588 Putative tRNA binding domain CH43_3092 PF03484 tRNA synthetase B5 domain CH43_3092 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH43_3092 PF03147 Ferredoxin-fold anticodon binding domain CH43_3092 PF03483 B3/4 domain CH43_3093 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH43_3093 PF01409 tRNA synthetases class II core domain (F) CH43_3094 PF00453 Ribosomal protein L20 CH43_3095 PF01632 Ribosomal protein L35 CH43_3096 PF05198 Translation initiation factor IF-3, N-terminal domain CH43_3096 PF00707 Translation initiation factor IF-3, C-terminal domain CH43_3097 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH43_3097 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH43_3097 PF02824 TGS domain CH43_3097 PF03129 Anticodon binding domain CH43_3098 PF13619 KTSC domain CH43_31 PF13472 GDSL-like Lipase/Acylhydrolase family CH43_3100 PF01914 MarC family integral membrane protein CH43_3101 PF01464 Transglycosylase SLT domain CH43_3102 PF01297 Zinc-uptake complex component A periplasmic CH43_3103 PF00005 ABC transporter CH43_3104 PF00950 ABC 3 transport family CH43_3105 PF00950 ABC 3 transport family CH43_3107 PF14002 YniB-like protein CH43_3108 PF13419 Haloacid dehalogenase-like hydrolase CH43_3109 PF00872 Transposase, Mutator family CH43_311 PF12724 Flavodoxin domain CH43_3110 PF07883 Cupin domain CH43_3111 PF04962 KduI/IolB family CH43_3113 PF06917 Periplasmic pectate lyase CH43_3114 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3115 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3116 PF03459 TOBE domain CH43_3116 PF17912 MalK OB fold domain CH43_3116 PF00005 ABC transporter CH43_3117 PF01547 Bacterial extracellular solute-binding protein CH43_3118 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH43_3119 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH43_312 PF02386 Cation transport protein CH43_3121 PF01510 N-acetylmuramoyl-L-alanine amidase CH43_3122 PF09339 IclR helix-turn-helix domain CH43_3122 PF01614 Bacterial transcriptional regulator CH43_3123 PF14583 Oligogalacturonate lyase CH43_3124 PF07690 Major Facilitator Superfamily CH43_3125 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH43_3125 PF02753 Pili assembly chaperone PapD, C-terminal domain CH43_3127 PF13954 PapC N-terminal domain CH43_3127 PF00577 Outer membrane usher protein CH43_3127 PF13953 PapC C-terminal domain CH43_3128 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH43_3128 PF02753 Pili assembly chaperone PapD, C-terminal domain CH43_3129 PF00419 Fimbrial protein CH43_313 PF09186 Domain of unknown function (DUF1949) CH43_313 PF01205 Uncharacterized protein family UPF0029 CH43_3130 PF01435 Peptidase family M48 CH43_3132 PF11818 C-terminal domain of tail specific protease (DUF3340) CH43_3132 PF17804 Tail specific protease N-terminal domain CH43_3132 PF03572 Peptidase family S41 CH43_3132 PF00595 PDZ domain CH43_3133 PF04352 ProQ/FINO family CH43_3133 PF17516 ProQ C-terminal domain CH43_3134 PF13185 GAF domain CH43_3135 PF04403 Paraquat-inducible protein A CH43_3136 PF02470 MlaD protein CH43_314 PF00557 Metallopeptidase family M24 CH43_3140 PF02753 Pili assembly chaperone PapD, C-terminal domain CH43_3140 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH43_3143 PF07351 Protein of unknown function (DUF1480) CH43_3145 PF00665 Integrase core domain CH43_3145 PF02796 Helix-turn-helix domain of resolvase CH43_3146 PF01695 IstB-like ATP binding protein CH43_3147 PF01695 IstB-like ATP binding protein CH43_315 PF00378 Enoyl-CoA hydratase/isomerase CH43_315 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH43_315 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH43_3153 PF00842 Alanine racemase, C-terminal domain CH43_3153 PF01168 Alanine racemase, N-terminal domain CH43_3156 PF05662 Coiled stalk of trimeric autotransporter adhesin CH43_3156 PF05658 Head domain of trimeric autotransporter adhesin CH43_3156 PF03895 YadA-like membrane anchor domain CH43_3156 PF13018 Extended Signal Peptide of Type V secretion system CH43_3157 PF05662 Coiled stalk of trimeric autotransporter adhesin CH43_3157 PF05658 Head domain of trimeric autotransporter adhesin CH43_3157 PF13018 Extended Signal Peptide of Type V secretion system CH43_3157 PF03895 YadA-like membrane anchor domain CH43_3158 PF01510 N-acetylmuramoyl-L-alanine amidase CH43_3159 PF04344 Chemotaxis phosphatase, CheZ CH43_316 PF00108 Thiolase, N-terminal domain CH43_316 PF02803 Thiolase, C-terminal domain CH43_3160 PF00072 Response regulator receiver domain CH43_3161 PF00072 Response regulator receiver domain CH43_3161 PF01339 CheB methylesterase CH43_3162 PF03705 CheR methyltransferase, all-alpha domain CH43_3162 PF01739 CheR methyltransferase, SAM binding domain CH43_3163 PF02203 Tar ligand binding domain homologue CH43_3163 PF00672 HAMP domain CH43_3163 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH43_3164 PF00672 HAMP domain CH43_3164 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH43_3164 PF02203 Tar ligand binding domain homologue CH43_3167 PF12951 Passenger-associated-transport-repeat CH43_3168 PF13309 HTH domain CH43_3168 PF08348 YheO-like PAS domain CH43_317 PF00970 Oxidoreductase FAD-binding domain CH43_317 PF00175 Oxidoreductase NAD-binding domain CH43_3170 PF01042 Endoribonuclease L-PSP CH43_3171 PF07690 Major Facilitator Superfamily CH43_3172 PF01584 CheW-like domain CH43_3173 PF01627 Hpt domain CH43_3173 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_3173 PF02895 Signal transducing histidine kinase, homodimeric domain CH43_3173 PF09078 CheY binding CH43_3173 PF01584 CheW-like domain CH43_3174 PF00691 OmpA family CH43_3174 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH43_3175 PF01618 MotA/TolQ/ExbB proton channel family CH43_3176 PF05280 Flagellar transcriptional activator (FlhC) CH43_3177 PF05247 Flagellar transcriptional activator (FlhD) CH43_3178 PF00689 Cation transporting ATPase, C-terminus CH43_3178 PF00690 Cation transporter/ATPase, N-terminus CH43_3179 PF02308 MgtC family CH43_318 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH43_3180 PF00672 HAMP domain CH43_3180 PF02203 Tar ligand binding domain homologue CH43_3180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH43_3181 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH43_3181 PF02203 Tar ligand binding domain homologue CH43_3181 PF00672 HAMP domain CH43_3182 PF10781 Dextransucrase DSRB CH43_3183 PF00313 'Cold-shock' DNA-binding domain CH43_3184 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH43_3184 PF02929 Beta galactosidase small chain CH43_3184 PF00703 Glycosyl hydrolases family 2 CH43_3184 PF16353 Domain of unknown function(DUF4981) CH43_3184 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH43_3185 PF14765 Polyketide synthase dehydratase CH43_3185 PF00550 Phosphopantetheine attachment site CH43_3185 PF08659 KR domain CH43_3185 PF02801 Beta-ketoacyl synthase, C-terminal domain CH43_3185 PF00109 Beta-ketoacyl synthase, N-terminal domain CH43_3185 PF00107 Zinc-binding dehydrogenase CH43_3185 PF16197 Ketoacyl-synthetase C-terminal extension CH43_3185 PF08240 Alcohol dehydrogenase GroES-like domain CH43_3185 PF00698 Acyl transferase domain CH43_3186 PF10777 Inner membrane protein YlaC CH43_3187 PF01037 Lrp/AsnC ligand binding domain CH43_3187 PF13404 AsnC-type helix-turn-helix domain CH43_3189 PF14001 YdfZ protein CH43_319 PF02357 Transcription termination factor nusG CH43_3190 PF00328 Histidine phosphatase superfamily (branch 2) CH43_3192 PF01638 HxlR-like helix-turn-helix CH43_3193 PF05368 NmrA-like family CH43_3194 PF08447 PAS fold CH43_3194 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH43_3196 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH43_3196 PF00356 Bacterial regulatory proteins, lacI family CH43_3197 PF00180 Isocitrate/isopropylmalate dehydrogenase CH43_3198 PF00849 RNA pseudouridylate synthase CH43_3199 PF00293 NUDIX domain CH43_32 PF00106 short chain dehydrogenase CH43_320 PF00490 Delta-aminolevulinic acid dehydratase CH43_3201 PF04356 Protein of unknown function (DUF489) CH43_3202 PF08328 Adenylosuccinate lyase C-terminal CH43_3202 PF00206 Lyase CH43_3204 PF00072 Response regulator receiver domain CH43_3204 PF00486 Transcriptional regulatory protein, C terminal CH43_3205 PF08918 PhoQ Sensor CH43_3205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_3206 PF08007 Cupin superfamily protein CH43_3207 PF07687 Peptidase dimerisation domain CH43_3207 PF01546 Peptidase family M20/M25/M40 CH43_3208 PF02146 Sir2 family CH43_3209 PF00480 ROK family CH43_321 PF01026 TatD related DNase CH43_3210 PF02687 FtsX-like permease family CH43_3210 PF12704 MacB-like periplasmic core domain CH43_3211 PF00005 ABC transporter CH43_3212 PF12704 MacB-like periplasmic core domain CH43_3212 PF02687 FtsX-like permease family CH43_3213 PF03461 TRCF domain CH43_3213 PF00271 Helicase conserved C-terminal domain CH43_3213 PF00270 DEAD/DEAH box helicase CH43_3213 PF02559 CarD-like/TRCF domain CH43_3213 PF17757 UvrB interaction domain CH43_3214 PF05433 Glycine zipper 2TM domain CH43_3215 PF00872 Transposase, Mutator family CH43_3218 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH43_3219 PF05728 Uncharacterised protein family (UPF0227) CH43_322 PF00902 Sec-independent protein translocase protein (TatC) CH43_3220 PF00933 Glycosyl hydrolase family 3 N terminal domain CH43_3221 PF01636 Phosphotransferase enzyme family CH43_3222 PF13036 Peptidoglycan-synthase activator LpoB CH43_3222 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH43_3223 PF07233 Protein of unknown function (DUF1425) CH43_3224 PF01230 HIT domain CH43_3225 PF08501 Shikimate dehydrogenase substrate binding domain CH43_3227 PF02378 Phosphotransferase system, EIIC CH43_3227 PF00367 phosphotransferase system, EIIB CH43_3228 PF01026 TatD related DNase CH43_3229 PF09115 DNA polymerase III, delta subunit, C terminal CH43_3230 PF02223 Thymidylate kinase CH43_3231 PF02618 YceG-like family CH43_3232 PF01063 Amino-transferase class IV CH43_3233 PF01797 Transposase IS200 like CH43_3234 PF00109 Beta-ketoacyl synthase, N-terminal domain CH43_3234 PF02801 Beta-ketoacyl synthase, C-terminal domain CH43_3235 PF00550 Phosphopantetheine attachment site CH43_3237 PF00698 Acyl transferase domain CH43_3238 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH43_3238 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH43_3239 PF02504 Fatty acid synthesis protein CH43_324 PF02416 mttA/Hcf106 family CH43_3240 PF01783 Ribosomal L32p protein family CH43_3241 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH43_3242 PF02545 Maf-like protein CH43_3243 PF00849 RNA pseudouridylate synthase CH43_3243 PF01479 S4 domain CH43_3244 PF12111 Polyribonucleotide phosphorylase C terminal CH43_3244 PF00575 S1 RNA binding domain CH43_3244 PF10150 Ribonuclease E/G family CH43_3245 PF03992 Antibiotic biosynthesis monooxygenase CH43_3246 PF01979 Amidohydrolase family CH43_3247 PF06183 DinI-like family CH43_3248 PF00872 Transposase, Mutator family CH43_3249 PF13991 BssS protein family CH43_325 PF03109 ABC1 family CH43_3250 PF01266 FAD dependent oxidoreductase CH43_3251 PF00196 Bacterial regulatory proteins, luxR family CH43_3252 PF01594 AI-2E family transporter CH43_3256 PF00196 Bacterial regulatory proteins, luxR family CH43_3256 PF03472 Autoinducer binding domain CH43_3257 PF00765 Autoinducer synthase CH43_3258 PF03466 LysR substrate binding domain CH43_3258 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_326 PF02036 SCP-2 sterol transfer family CH43_3260 PF00083 Sugar (and other) transporter CH43_3262 PF00248 Aldo/keto reductase family CH43_3263 PF09618 CRISPR-associated protein (Cas_Csy4) CH43_3264 PF09615 CRISPR-associated protein (Cas_Csy3) CH43_3265 PF09614 CRISPR-associated protein (Cas_Csy2) CH43_3266 PF09611 CRISPR-associated protein (Cas_Csy1) CH43_3268 PF01867 CRISPR associated protein Cas1 CH43_3269 PF00924 Mechanosensitive ion channel CH43_327 PF01209 ubiE/COQ5 methyltransferase family CH43_3273 PF04041 beta-1,4-mannooligosaccharide phosphorylase CH43_3274 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3275 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3277 PF00356 Bacterial regulatory proteins, lacI family CH43_3278 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH43_3278 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH43_3278 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH43_3278 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH43_3279 PF00005 ABC transporter CH43_3279 PF17912 MalK OB fold domain CH43_328 PF02646 RmuC family CH43_3280 PF00872 Transposase, Mutator family CH43_3282 PF05860 haemagglutination activity domain CH43_3282 PF04829 Pre-toxin domain with VENN motif CH43_3282 PF15526 Novel toxin 21 CH43_3282 PF13332 Hemagglutinin repeat CH43_3282 PF05594 Haemagluttinin repeat CH43_3286 PF13018 Extended Signal Peptide of Type V secretion system CH43_3286 PF13332 Hemagglutinin repeat CH43_3286 PF05860 haemagglutination activity domain CH43_3286 PF04829 Pre-toxin domain with VENN motif CH43_3289 PF05860 haemagglutination activity domain CH43_3289 PF13018 Extended Signal Peptide of Type V secretion system CH43_3289 PF13332 Hemagglutinin repeat CH43_3289 PF04829 Pre-toxin domain with VENN motif CH43_329 PF09335 SNARE associated Golgi protein CH43_3290 PF17287 POTRA domain CH43_3290 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH43_3290 PF08479 POTRA domain, ShlB-type CH43_3291 PF00175 Oxidoreductase NAD-binding domain CH43_3291 PF00970 Oxidoreductase FAD-binding domain CH43_3291 PF00111 2Fe-2S iron-sulfur cluster binding domain CH43_3292 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CH43_3292 PF00355 Rieske [2Fe-2S] domain CH43_3293 PF02028 BCCT, betaine/carnitine/choline family transporter CH43_3294 PF00180 Isocitrate/isopropylmalate dehydrogenase CH43_3295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_3295 PF03466 LysR substrate binding domain CH43_3296 PF00356 Bacterial regulatory proteins, lacI family CH43_3297 PF02653 Branched-chain amino acid transport system / permease component CH43_33 PF00085 Thioredoxin CH43_330 PF13722 5TM C-terminal transporter carbon starvation CstA CH43_330 PF02554 Carbon starvation protein CstA CH43_3300 PF13407 Periplasmic binding protein domain CH43_3301 PF08240 Alcohol dehydrogenase GroES-like domain CH43_3301 PF00107 Zinc-binding dehydrogenase CH43_3305 PF13505 Outer membrane protein beta-barrel domain CH43_3306 PF00892 EamA-like transporter family CH43_3308 PF13649 Methyltransferase domain CH43_3309 PF00210 Ferritin-like domain CH43_3311 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH43_3312 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3313 PF00005 ABC transporter CH43_3314 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH43_3314 PF08447 PAS fold CH43_3314 PF13426 PAS domain CH43_3315 PF05971 RNA methyltransferase CH43_3316 PF07338 Protein of unknown function (DUF1471) CH43_3317 PF02885 Glycosyl transferase family, helical bundle domain CH43_3318 PF00501 AMP-binding enzyme CH43_3318 PF13193 AMP-binding enzyme C-terminal domain CH43_3319 PF13378 Enolase C-terminal domain-like CH43_332 PF01048 Phosphorylase superfamily CH43_3320 PF00378 Enoyl-CoA hydratase/isomerase CH43_3321 PF12697 Alpha/beta hydrolase family CH43_3322 PF16582 Middle domain of thiamine pyrophosphate CH43_3322 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH43_3322 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH43_3323 PF00425 chorismate binding enzyme CH43_3325 PF05957 Bacterial protein of unknown function (DUF883) CH43_3327 PF00920 Dehydratase family CH43_3328 PF03928 Haem-degrading CH43_3329 PF07690 Major Facilitator Superfamily CH43_333 PF01738 Dienelactone hydrolase family CH43_3330 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH43_3330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH43_3331 PF00356 Bacterial regulatory proteins, lacI family CH43_3333 PF00106 short chain dehydrogenase CH43_3334 PF01202 Shikimate kinase CH43_3335 PF04074 YhcH/YjgK/YiaL CH43_3337 PF00361 Proton-conducting membrane transporter CH43_3338 PF00361 Proton-conducting membrane transporter CH43_3339 PF00361 Proton-conducting membrane transporter CH43_3339 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH43_334 PF08267 Cobalamin-independent synthase, N-terminal domain CH43_334 PF01717 Cobalamin-independent synthase, Catalytic domain CH43_3340 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH43_3341 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH43_3342 PF12838 4Fe-4S dicluster domain CH43_3343 PF00146 NADH dehydrogenase CH43_3344 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH43_3344 PF00384 Molybdopterin oxidoreductase CH43_3344 PF01568 Molydopterin dinucleotide binding domain CH43_3344 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH43_3345 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH43_3345 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH43_3345 PF10531 SLBB domain CH43_3347 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH43_3347 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH43_3348 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH43_3349 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH43_335 PF00892 EamA-like transporter family CH43_3350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_3350 PF03466 LysR substrate binding domain CH43_3351 PF00155 Aminotransferase class I and II CH43_3353 PF02080 TrkA-C domain CH43_3353 PF03600 Citrate transporter CH43_3354 PF13419 Haloacid dehalogenase-like hydrolase CH43_3355 PF03887 YfbU domain CH43_3356 PF04217 Protein of unknown function, DUF412 CH43_3357 PF00871 Acetokinase family CH43_3358 PF07085 DRTGG domain CH43_3358 PF01515 Phosphate acetyl/butaryl transferase CH43_3359 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH43_3359 PF00356 Bacterial regulatory proteins, lacI family CH43_336 PF03466 LysR substrate binding domain CH43_336 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_3360 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH43_3362 PF03611 PTS system sugar-specific permease component CH43_3363 PF00293 NUDIX domain CH43_3367 PF08338 Domain of unknown function (DUF1731) CH43_3367 PF01370 NAD dependent epimerase/dehydratase family CH43_3368 PF00005 ABC transporter CH43_3369 PF00528 Binding-protein-dependent transport system inner membrane component CH43_337 PF03547 Membrane transport protein CH43_3370 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3371 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH43_3372 PF02441 Flavoprotein CH43_3373 PF00156 Phosphoribosyl transferase domain CH43_3374 PF02674 Colicin V production protein CH43_3375 PF05036 Sporulation related domain CH43_3376 PF08245 Mur ligase middle domain CH43_3376 PF02875 Mur ligase family, glutamate ligase domain CH43_3377 PF01039 Carboxyl transferase domain CH43_3377 PF17848 Acetyl-coA carboxylase zinc finger domain CH43_3378 PF09335 SNARE associated Golgi protein CH43_3379 PF01416 tRNA pseudouridine synthase CH43_338 PF03009 Glycerophosphoryl diester phosphodiesterase family CH43_3380 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH43_3380 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH43_3381 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH43_3381 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH43_3381 PF11890 Domain of unknown function (DUF3410) CH43_3383 PF00892 EamA-like transporter family CH43_3385 PF00419 Fimbrial protein CH43_3386 PF01177 Asp/Glu/Hydantoin racemase CH43_3387 PF00109 Beta-ketoacyl synthase, N-terminal domain CH43_3387 PF02801 Beta-ketoacyl synthase, C-terminal domain CH43_3388 PF01266 FAD dependent oxidoreductase CH43_3388 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH43_3389 PF08891 YfcL protein CH43_339 PF00005 ABC transporter CH43_339 PF17912 MalK OB fold domain CH43_3390 PF04315 Elongation factor P hydroxylase CH43_3391 PF01925 Sulfite exporter TauE/SafE CH43_3392 PF03411 Penicillin-insensitive murein endopeptidase CH43_3393 PF01264 Chorismate synthase CH43_3394 PF05175 Methyltransferase small domain CH43_3395 PF01713 Smr domain CH43_3396 PF00300 Histidine phosphatase superfamily (branch 1) CH43_3397 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH43_3397 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH43_3397 PF00378 Enoyl-CoA hydratase/isomerase CH43_3398 PF02803 Thiolase, C-terminal domain CH43_3398 PF00108 Thiolase, N-terminal domain CH43_3399 PF04175 Protein of unknown function (DUF406) CH43_34 PF01145 SPFH domain / Band 7 family CH43_34 PF16200 C-terminal region of band_7 CH43_340 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3400 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH43_3401 PF04333 MlaA lipoprotein CH43_3402 PF03918 Cytochrome C biogenesis protein CH43_3403 PF03918 Cytochrome C biogenesis protein CH43_3404 PF08534 Redoxin CH43_3405 PF01578 Cytochrome C assembly protein CH43_3405 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH43_3406 PF03100 CcmE CH43_3407 PF04995 Heme exporter protein D (CcmD) CH43_3408 PF01578 Cytochrome C assembly protein CH43_3409 PF03379 CcmB protein CH43_341 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3410 PF00005 ABC transporter CH43_3413 PF04011 LemA family CH43_3415 PF08274 PhnA Zinc-Ribbon CH43_3415 PF03831 PhnA domain CH43_342 PF13416 Bacterial extracellular solute-binding protein CH43_3421 PF04717 Type VI secretion system, phage-baseplate injector CH43_3425 PF01695 IstB-like ATP binding protein CH43_3426 PF00665 Integrase core domain CH43_3426 PF02796 Helix-turn-helix domain of resolvase CH43_3434 PF13953 PapC C-terminal domain CH43_3434 PF13954 PapC N-terminal domain CH43_3434 PF00577 Outer membrane usher protein CH43_3435 PF00872 Transposase, Mutator family CH43_3436 PF00577 Outer membrane usher protein CH43_3436 PF13954 PapC N-terminal domain CH43_3436 PF13953 PapC C-terminal domain CH43_3437 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH43_3437 PF02753 Pili assembly chaperone PapD, C-terminal domain CH43_3438 PF16970 Type-1 fimbrial protein, A CH43_3439 PF17871 AAA lid domain CH43_3439 PF00004 ATPase family associated with various cellular activities (AAA) CH43_3439 PF10431 C-terminal, D2-small domain, of ClpB protein CH43_3439 PF07724 AAA domain (Cdc48 subfamily) CH43_3449 PF13406 Transglycosylase SLT domain CH43_3451 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3452 PF00005 ABC transporter CH43_3454 PF05638 Type VI secretion system effector, Hcp CH43_3456 PF01568 Molydopterin dinucleotide binding domain CH43_3456 PF00384 Molybdopterin oxidoreductase CH43_3456 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH43_3457 PF12800 4Fe-4S binding domain CH43_3457 PF13247 4Fe-4S dicluster domain CH43_3458 PF04976 DMSO reductase anchor subunit (DmsC) CH43_3459 PF02613 Nitrate reductase delta subunit CH43_3461 PF05643 Putative bacterial lipoprotein (DUF799) CH43_3463 PF03783 Curli production assembly/transport component CsgG CH43_3465 PF01292 Prokaryotic cytochrome b561 CH43_3466 PF00155 Aminotransferase class I and II CH43_3467 PF07350 Protein of unknown function (DUF1479) CH43_3468 PF02685 Glucokinase CH43_3470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_3470 PF03466 LysR substrate binding domain CH43_3471 PF00248 Aldo/keto reductase family CH43_3473 PF01566 Natural resistance-associated macrophage protein CH43_3474 PF07662 Na+ dependent nucleoside transporter C-terminus CH43_3474 PF01773 Na+ dependent nucleoside transporter N-terminus CH43_3474 PF07670 Nucleoside recognition CH43_3479 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH43_3481 PF01797 Transposase IS200 like CH43_3484 PF12843 Putative quorum-sensing-regulated virulence factor CH43_3485 PF00533 BRCA1 C Terminus (BRCT) domain CH43_3485 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH43_3485 PF12826 Helix-hairpin-helix motif CH43_3485 PF01653 NAD-dependent DNA ligase adenylation domain CH43_3485 PF03120 NAD-dependent DNA ligase OB-fold domain CH43_3486 PF04354 ZipA, C-terminal FtsZ-binding domain CH43_3488 PF00291 Pyridoxal-phosphate dependent enzyme CH43_3489 PF00381 PTS HPr component phosphorylation site CH43_3490 PF00391 PEP-utilising enzyme, mobile domain CH43_3490 PF05524 PEP-utilising enzyme, N-terminal CH43_3490 PF02896 PEP-utilising enzyme, TIM barrel domain CH43_3491 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH43_3493 PF01797 Transposase IS200 like CH43_3495 PF00672 HAMP domain CH43_3495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_3495 PF00512 His Kinase A (phospho-acceptor) domain CH43_3495 PF16527 Two-component sensor protein CpxA, periplasmic domain CH43_3496 PF00072 Response regulator receiver domain CH43_3496 PF00486 Transcriptional regulatory protein, C terminal CH43_3497 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH43_3498 PF12704 MacB-like periplasmic core domain CH43_3498 PF00005 ABC transporter CH43_3498 PF02687 FtsX-like permease family CH43_3499 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH43_3499 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH43_35 PF01957 NfeD-like C-terminal, partner-binding CH43_350 PF00005 ABC transporter CH43_3500 PF00474 Sodium:solute symporter family CH43_3502 PF05195 Aminopeptidase P, N-terminal domain CH43_3502 PF00557 Metallopeptidase family M24 CH43_3504 PF00155 Aminotransferase class I and II CH43_3506 PF00672 HAMP domain CH43_3506 PF00512 His Kinase A (phospho-acceptor) domain CH43_3506 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_3507 PF00072 Response regulator receiver domain CH43_3507 PF00486 Transcriptional regulatory protein, C terminal CH43_3509 PF00291 Pyridoxal-phosphate dependent enzyme CH43_351 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH43_351 PF00005 ABC transporter CH43_3510 PF00005 ABC transporter CH43_3511 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3512 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3514 PF07690 Major Facilitator Superfamily CH43_3515 PF01380 SIS domain CH43_3515 PF01418 Helix-turn-helix domain, rpiR family CH43_3516 PF04074 YhcH/YjgK/YiaL CH43_3517 PF00480 ROK family CH43_3518 PF12468 Type III secretion system leucine rich repeat protein CH43_3519 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH43_352 PF02653 Branched-chain amino acid transport system / permease component CH43_352 PF11862 Domain of unknown function (DUF3382) CH43_3520 PF00701 Dihydrodipicolinate synthetase family CH43_3521 PF04261 Dyp-type peroxidase family CH43_3524 PF04076 Bacterial OB fold (BOF) protein CH43_3525 PF03212 Pertactin CH43_3525 PF13018 Extended Signal Peptide of Type V secretion system CH43_3525 PF03797 Autotransporter beta-domain CH43_3525 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH43_3528 PF00583 Acetyltransferase (GNAT) family CH43_3529 PF01218 Coproporphyrinogen III oxidase CH43_353 PF02653 Branched-chain amino acid transport system / permease component CH43_3530 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH43_3531 PF00390 Malic enzyme, N-terminal domain CH43_3531 PF03949 Malic enzyme, NAD binding domain CH43_3531 PF01515 Phosphate acetyl/butaryl transferase CH43_3532 PF00293 NUDIX domain CH43_3533 PF03264 NapC/NirT cytochrome c family, N-terminal region CH43_3534 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH43_3535 PF00384 Molybdopterin oxidoreductase CH43_3535 PF01568 Molydopterin dinucleotide binding domain CH43_3535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH43_3535 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH43_3536 PF03927 NapD protein CH43_3537 PF00037 4Fe-4S binding domain CH43_3537 PF12800 4Fe-4S binding domain CH43_3537 PF13187 4Fe-4S dicluster domain CH43_3538 PF00072 Response regulator receiver domain CH43_3538 PF00196 Bacterial regulatory proteins, luxR family CH43_354 PF13458 Periplasmic binding protein CH43_3540 PF00873 AcrB/AcrD/AcrF family CH43_3542 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH43_3543 PF04055 Radical SAM superfamily CH43_3543 PF13186 Iron-sulfur cluster-binding domain CH43_3544 PF00884 Sulfatase CH43_3545 PF08402 TOBE domain CH43_3545 PF00005 ABC transporter CH43_3546 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3549 PF03960 ArsC family CH43_355 PF12568 Acetyltransferase (GNAT) domain, PanZ CH43_3550 PF07687 Peptidase dimerisation domain CH43_3550 PF01546 Peptidase family M20/M25/M40 CH43_3551 PF02557 D-alanyl-D-alanine carboxypeptidase CH43_3552 PF13980 Uncharacterised protein family (UPF0370) CH43_3553 PF17176 tRNA-binding domain CH43_3553 PF05127 Helicase CH43_3553 PF08351 Domain of unknown function (DUF1726) CH43_3553 PF13718 GNAT acetyltransferase 2 CH43_3554 PF04284 Protein of unknown function (DUF441) CH43_3555 PF04228 Putative neutral zinc metallopeptidase CH43_3556 PF01259 SAICAR synthetase CH43_3557 PF01797 Transposase IS200 like CH43_3558 PF06804 NlpB/DapX lipoprotein CH43_3559 PF00701 Dihydrodipicolinate synthetase family CH43_356 PF01797 Transposase IS200 like CH43_3560 PF01842 ACT domain CH43_3561 PF00578 AhpC/TSA family CH43_3564 PF01594 AI-2E family transporter CH43_3565 PF07720 Tetratricopeptide repeat CH43_3565 PF01435 Peptidase family M48 CH43_3566 PF03960 ArsC family CH43_3567 PF00308 Bacterial dnaA protein CH43_3568 PF01797 Transposase IS200 like CH43_357 PF00140 Sigma-70 factor, region 1.2 CH43_357 PF04545 Sigma-70, region 4 CH43_357 PF04542 Sigma-70 region 2 CH43_3570 PF02769 AIR synthase related protein, C-terminal domain CH43_3570 PF00586 AIR synthase related protein, N-terminal domain CH43_3571 PF00551 Formyl transferase CH43_3572 PF13302 Acetyltransferase (GNAT) domain CH43_3575 PF00005 ABC transporter CH43_3576 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3577 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3578 PF13089 Polyphosphate kinase N-terminal domain CH43_3578 PF02503 Polyphosphate kinase middle domain CH43_3578 PF17941 Polyphosphate kinase C-terminal domain 1 CH43_3578 PF13090 Polyphosphate kinase C-terminal domain 2 CH43_3579 PF02541 Ppx/GppA phosphatase family CH43_358 PF18075 FtsX extracellular domain CH43_358 PF02687 FtsX-like permease family CH43_3580 PF03448 MgtE intracellular N domain CH43_3580 PF00571 CBS domain CH43_3580 PF01769 Divalent cation transporter CH43_3581 PF00012 Hsp70 protein CH43_3582 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3583 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3585 PF00202 Aminotransferase class-III CH43_3586 PF00155 Aminotransferase class I and II CH43_3586 PF00392 Bacterial regulatory proteins, gntR family CH43_3587 PF08402 TOBE domain CH43_3587 PF00005 ABC transporter CH43_3588 PF13533 Biotin-lipoyl like CH43_3589 PF00873 AcrB/AcrD/AcrF family CH43_359 PF00005 ABC transporter CH43_3592 PF07690 Major Facilitator Superfamily CH43_3593 PF00512 His Kinase A (phospho-acceptor) domain CH43_3593 PF00672 HAMP domain CH43_3593 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_3594 PF00486 Transcriptional regulatory protein, C terminal CH43_3594 PF00072 Response regulator receiver domain CH43_3595 PF07411 Domain of unknown function (DUF1508) CH43_3597 PF00781 Diacylglycerol kinase catalytic domain CH43_36 PF13411 MerR HTH family regulatory protein CH43_360 PF00448 SRP54-type protein, GTPase domain CH43_360 PF00448 SRP54-type protein, GTPase domain CH43_360 PF02881 SRP54-type protein, helical bundle domain CH43_360 PF02881 SRP54-type protein, helical bundle domain CH43_3600 PF08543 Phosphomethylpyrimidine kinase CH43_3603 PF00872 Transposase, Mutator family CH43_3609 PF05638 Type VI secretion system effector, Hcp CH43_3610 PF01797 Transposase IS200 like CH43_3611 PF00958 GMP synthase C terminal domain CH43_3611 PF02540 NAD synthase CH43_3611 PF00117 Glutamine amidotransferase class-I CH43_3612 PF00571 CBS domain CH43_3612 PF00478 IMP dehydrogenase / GMP reductase domain CH43_3613 PF02601 Exonuclease VII, large subunit CH43_3613 PF13742 OB-fold nucleic acid binding domain CH43_3614 PF07191 zinc-ribbons CH43_3616 PF01926 50S ribosome-binding GTPase CH43_3616 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH43_3617 PF13360 PQQ-like domain CH43_3618 PF09976 Tetratricopeptide repeat-like domain CH43_3619 PF13393 Histidyl-tRNA synthetase CH43_3619 PF03129 Anticodon binding domain CH43_362 PF06611 Protein of unknown function (DUF1145) CH43_3620 PF04551 GcpE protein CH43_3621 PF13464 Domain of unknown function (DUF4115) CH43_3623 PF04055 Radical SAM superfamily CH43_3624 PF00334 Nucleoside diphosphate kinase CH43_3626 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH43_3626 PF03797 Autotransporter beta-domain CH43_3626 PF03212 Pertactin CH43_3627 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH43_3627 PF03212 Pertactin CH43_3627 PF03797 Autotransporter beta-domain CH43_3629 PF07179 SseB protein N-terminal domain CH43_3629 PF14581 SseB protein C-terminal domain CH43_3630 PF12404 Peptidase CH43_3630 PF00883 Cytosol aminopeptidase family, catalytic domain CH43_3631 PF04384 Iron-sulphur cluster assembly CH43_3632 PF00111 2Fe-2S iron-sulfur cluster binding domain CH43_3633 PF00012 Hsp70 protein CH43_3634 PF00226 DnaJ domain CH43_3634 PF07743 HSCB C-terminal oligomerisation domain CH43_3635 PF01521 Iron-sulphur cluster biosynthesis CH43_3636 PF01592 NifU-like N terminal domain CH43_3637 PF00266 Aminotransferase class-V CH43_3638 PF02082 Transcriptional regulator CH43_3639 PF00588 SpoU rRNA Methylase family CH43_3640 PF00459 Inositol monophosphatase family CH43_3641 PF03824 High-affinity nickel-transport protein CH43_3642 PF06226 Protein of unknown function (DUF1007) CH43_3643 PF12832 MFS_1 like family CH43_3644 PF00874 PRD domain CH43_3645 PF13505 Outer membrane protein beta-barrel domain CH43_3646 PF00464 Serine hydroxymethyltransferase CH43_3647 PF00042 Globin CH43_3647 PF00970 Oxidoreductase FAD-binding domain CH43_3647 PF00175 Oxidoreductase NAD-binding domain CH43_3648 PF00665 Integrase core domain CH43_3648 PF02796 Helix-turn-helix domain of resolvase CH43_3649 PF01695 IstB-like ATP binding protein CH43_365 PF07947 YhhN family CH43_3650 PF14502 Helix-turn-helix domain CH43_3650 PF14503 YhfZ C-terminal domain CH43_3651 PF00543 Nitrogen regulatory protein P-II CH43_3652 PF00795 Carbon-nitrogen hydrolase CH43_3652 PF02540 NAD synthase CH43_3653 PF00072 Response regulator receiver domain CH43_3653 PF00158 Sigma-54 interaction domain CH43_3654 PF13942 YfhG lipoprotein CH43_3655 PF00512 His Kinase A (phospho-acceptor) domain CH43_3655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_366 PF00403 Heavy-metal-associated domain CH43_3660 PF02769 AIR synthase related protein, C-terminal domain CH43_3660 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH43_3660 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH43_3661 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH43_3661 PF01464 Transglycosylase SLT domain CH43_3662 PF14437 MafB19-like deaminase CH43_3664 PF01380 SIS domain CH43_3665 PF01418 Helix-turn-helix domain, rpiR family CH43_3665 PF01380 SIS domain CH43_3666 PF12838 4Fe-4S dicluster domain CH43_3667 PF01797 Transposase IS200 like CH43_3668 PF03886 ABC-type transport auxiliary lipoprotein component CH43_3669 PF02470 MlaD protein CH43_367 PF01206 Sulfurtransferase TusA CH43_3670 PF04403 Paraquat-inducible protein A CH43_3671 PF12848 ABC transporter CH43_3671 PF00005 ABC transporter CH43_3671 PF16326 ABC transporter C-terminal domain CH43_3672 PF02926 THUMP domain CH43_3672 PF10672 S-adenosylmethionine-dependent methyltransferase CH43_3672 PF01170 Putative RNA methylase family UPF0020 CH43_3673 PF00111 2Fe-2S iron-sulfur cluster binding domain CH43_3673 PF03473 MOSC domain CH43_3673 PF03476 MOSC N-terminal beta barrel domain CH43_3674 PF07126 Cell-division protein ZapC CH43_3675 PF01180 Dihydroorotate dehydrogenase CH43_3676 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH43_3676 PF01433 Peptidase family M1 domain CH43_3676 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH43_3677 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH43_3677 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH43_3678 PF00152 tRNA synthetases class II (D, K and N) CH43_3678 PF01336 OB-fold nucleic acid binding domain CH43_3679 PF00267 Gram-negative porin CH43_368 PF02592 Putative vitamin uptake transporter CH43_3680 PF00155 Aminotransferase class I and II CH43_3681 PF00753 Metallo-beta-lactamase superfamily CH43_3682 PF05951 Bacterial protein of unknown function (DUF882) CH43_3683 PF03734 L,D-transpeptidase catalytic domain CH43_3683 PF01471 Putative peptidoglycan binding domain CH43_3685 PF16330 MukB hinge domain CH43_3685 PF04310 MukB N-terminal CH43_3686 PF04288 MukE-like family CH43_3687 PF03882 MukF winged-helix domain CH43_3687 PF17192 MukF middle domain CH43_3687 PF17193 MukF C-terminal domain CH43_3689 PF01636 Phosphotransferase enzyme family CH43_369 PF08786 DcrB CH43_3690 PF02348 Cytidylyltransferase CH43_3691 PF03966 Trm112p-like protein CH43_3692 PF00313 'Cold-shock' DNA-binding domain CH43_3693 PF07063 Domain of unknown function (DUF1338) CH43_3694 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH43_3695 PF00005 ABC transporter CH43_3695 PF00664 ABC transporter transmembrane region CH43_3696 PF03772 Competence protein CH43_3696 PF00753 Metallo-beta-lactamase superfamily CH43_3697 PF00216 Bacterial DNA-binding protein CH43_3699 PF00575 S1 RNA binding domain CH43_37 PF00403 Heavy-metal-associated domain CH43_370 PF02754 Cysteine-rich domain CH43_370 PF13183 4Fe-4S dicluster domain CH43_3700 PF02224 Cytidylate kinase CH43_3701 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH43_3702 PF00266 Aminotransferase class-V CH43_3704 PF03895 YadA-like membrane anchor domain CH43_3704 PF13018 Extended Signal Peptide of Type V secretion system CH43_3704 PF13018 Extended Signal Peptide of Type V secretion system CH43_3704 PF05662 Coiled stalk of trimeric autotransporter adhesin CH43_3704 PF05662 Coiled stalk of trimeric autotransporter adhesin CH43_3704 PF05658 Head domain of trimeric autotransporter adhesin CH43_3704 PF05658 Head domain of trimeric autotransporter adhesin CH43_3704 PF03895 YadA-like membrane anchor domain CH43_3705 PF00710 Asparaginase, N-terminal CH43_3705 PF17763 Glutaminase/Asparaginase C-terminal domain CH43_3706 PF18381 YcaO cyclodehydratase C-terminal domain CH43_3706 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH43_3707 PF01226 Formate/nitrite transporter CH43_3708 PF01228 Glycine radical CH43_3708 PF02901 Pyruvate formate lyase-like CH43_371 PF00890 FAD binding domain CH43_3710 PF04055 Radical SAM superfamily CH43_3711 PF07690 Major Facilitator Superfamily CH43_3712 PF02403 Seryl-tRNA synthetase N-terminal domain CH43_3712 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH43_3713 PF00004 ATPase family associated with various cellular activities (AAA) CH43_3713 PF12002 MgsA AAA+ ATPase C terminal CH43_3713 PF16193 AAA C-terminal domain CH43_3715 PF03548 Outer membrane lipoprotein carrier protein LolA CH43_3716 PF01580 FtsK/SpoIIIE family CH43_3716 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH43_3716 PF09397 Ftsk gamma domain CH43_3716 PF17854 FtsK alpha domain CH43_3717 PF01037 Lrp/AsnC ligand binding domain CH43_3718 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH43_3719 PF00005 ABC transporter CH43_3719 PF00664 ABC transporter transmembrane region CH43_372 PF01266 FAD dependent oxidoreductase CH43_372 PF04324 BFD-like [2Fe-2S] binding domain CH43_3720 PF00664 ABC transporter transmembrane region CH43_3720 PF00005 ABC transporter CH43_3721 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH43_3722 PF01176 Translation initiation factor 1A / IF-1 CH43_3724 PF02861 Clp amino terminal domain, pathogenicity island component CH43_3724 PF10431 C-terminal, D2-small domain, of ClpB protein CH43_3724 PF07724 AAA domain (Cdc48 subfamily) CH43_3724 PF17871 AAA lid domain CH43_3724 PF00004 ATPase family associated with various cellular activities (AAA) CH43_3725 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH43_3726 PF00313 'Cold-shock' DNA-binding domain CH43_3727 PF12704 MacB-like periplasmic core domain CH43_3727 PF02687 FtsX-like permease family CH43_3727 PF00005 ABC transporter CH43_3728 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH43_3729 PF04393 Protein of unknown function (DUF535) CH43_373 PF03009 Glycerophosphoryl diester phosphodiesterase family CH43_3730 PF11398 Protein of unknown function (DUF2813) CH43_3731 PF03956 Lysine exporter LysO CH43_3732 PF03063 Prismane/CO dehydrogenase family CH43_3733 PF00970 Oxidoreductase FAD-binding domain CH43_3733 PF00175 Oxidoreductase NAD-binding domain CH43_3733 PF00111 2Fe-2S iron-sulfur cluster binding domain CH43_3734 PF00205 Thiamine pyrophosphate enzyme, central domain CH43_3734 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH43_3734 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH43_3735 PF01212 Beta-eliminating lyase CH43_3736 PF13460 NAD(P)H-binding CH43_3736 PF11066 Protein of unknown function (DUF2867) CH43_3737 PF01370 NAD dependent epimerase/dehydratase family CH43_3738 PF12883 Protein of unknown function (DUF3828) CH43_3739 PF01817 Chorismate mutase type II CH43_3740 PF00005 ABC transporter CH43_3741 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH43_3742 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3743 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3744 PF00892 EamA-like transporter family CH43_3745 PF10100 Staphylopine dehydrogenase CH43_3746 PF03059 Nicotianamine synthase protein CH43_3747 PF00005 ABC transporter CH43_3748 PF01032 FecCD transport family CH43_3753 PF05958 tRNA (Uracil-5-)-methyltransferase CH43_3754 PF10767 Protein of unknown function (DUF2593) CH43_3755 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3756 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3757 PF08402 TOBE domain CH43_3757 PF00005 ABC transporter CH43_3758 PF13416 Bacterial extracellular solute-binding protein CH43_3759 PF10722 Putative bacterial sensory transduction regulator CH43_376 PF12146 Serine aminopeptidase, S33 CH43_3760 PF07214 Protein of unknown function (DUF1418) CH43_3761 PF00462 Glutaredoxin CH43_3762 PF06826 Predicted Permease Membrane Region CH43_3762 PF02080 TrkA-C domain CH43_3764 PF01569 PAP2 superfamily CH43_3765 PF01791 DeoC/LacD family aldolase CH43_3766 PF08220 DeoR-like helix-turn-helix domain CH43_3766 PF00455 DeoR C terminal sensor domain CH43_3768 PF00768 D-alanyl-D-alanine carboxypeptidase CH43_3768 PF07943 Penicillin-binding protein 5, C-terminal domain CH43_3769 PF00528 Binding-protein-dependent transport system inner membrane component CH43_377 PF01810 LysE type translocator CH43_3770 PF00005 ABC transporter CH43_3770 PF09383 NIL domain CH43_3771 PF03180 NLPA lipoprotein CH43_3774 PF00043 Glutathione S-transferase, C-terminal domain CH43_3774 PF13417 Glutathione S-transferase, N-terminal domain CH43_3775 PF00593 TonB dependent receptor CH43_3775 PF07715 TonB-dependent Receptor Plug Domain CH43_3776 PF00005 ABC transporter CH43_3777 PF01032 FecCD transport family CH43_378 PF01810 LysE type translocator CH43_3780 PF00324 Amino acid permease CH43_3782 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_3782 PF03466 LysR substrate binding domain CH43_3783 PF03601 Conserved hypothetical protein 698 CH43_3784 PF01261 Xylose isomerase-like TIM barrel CH43_3785 PF13953 PapC C-terminal domain CH43_3785 PF13954 PapC N-terminal domain CH43_3785 PF00577 Outer membrane usher protein CH43_3786 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH43_3786 PF02753 Pili assembly chaperone PapD, C-terminal domain CH43_3788 PF17550 Family of unknown function CH43_3789 PF00486 Transcriptional regulatory protein, C terminal CH43_379 PF00271 Helicase conserved C-terminal domain CH43_379 PF00270 DEAD/DEAH box helicase CH43_379 PF16124 RecQ zinc-binding CH43_379 PF09382 RQC domain CH43_379 PF00570 HRDC domain CH43_3790 PF02378 Phosphotransferase system, EIIC CH43_3790 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH43_3791 PF00294 pfkB family carbohydrate kinase CH43_3792 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH43_3792 PF00381 PTS HPr component phosphorylation site CH43_3793 PF00293 NUDIX domain CH43_3794 PF02653 Branched-chain amino acid transport system / permease component CH43_3795 PF00005 ABC transporter CH43_3797 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH43_3798 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH43_3798 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH43_3799 PF00171 Aldehyde dehydrogenase family CH43_38 PF01963 TraB family CH43_380 PF02253 Phospholipase A1 CH43_3801 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH43_3801 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH43_3801 PF01842 ACT domain CH43_3803 PF03692 Putative zinc- or iron-chelating domain CH43_3804 PF03222 Tryptophan/tyrosine permease family CH43_3805 PF08207 Elongation factor P (EF-P) KOW-like domain CH43_3805 PF09285 Elongation factor P, C-terminal CH43_3805 PF01132 Elongation factor P (EF-P) OB domain CH43_3806 PF03786 D-mannonate dehydratase (UxuA) CH43_3807 PF01232 Mannitol dehydrogenase Rossmann domain CH43_3807 PF08125 Mannitol dehydrogenase C-terminal domain CH43_3808 PF00392 Bacterial regulatory proteins, gntR family CH43_3808 PF07729 FCD domain CH43_381 PF03061 Thioesterase superfamily CH43_3810 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH43_3810 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH43_3811 PF01569 PAP2 superfamily CH43_3812 PF00877 NlpC/P60 family CH43_3814 PF00563 EAL domain CH43_3814 PF12792 CSS motif domain associated with EAL CH43_3815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH43_3816 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3817 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3817 PF12911 N-terminal TM domain of oligopeptide transport permease C CH43_3818 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH43_3818 PF00005 ABC transporter CH43_3819 PF13989 YejG-like protein CH43_382 PF00892 EamA-like transporter family CH43_3820 PF07690 Major Facilitator Superfamily CH43_3821 PF00849 RNA pseudouridylate synthase CH43_3821 PF01479 S4 domain CH43_3822 PF00271 Helicase conserved C-terminal domain CH43_3822 PF04851 Type III restriction enzyme, res subunit CH43_3823 PF01386 Ribosomal L25p family CH43_3824 PF01797 Transposase IS200 like CH43_3825 PF04245 37-kD nucleoid-associated bacterial protein CH43_3826 PF07208 Protein of unknown function (DUF1414) CH43_3827 PF11893 Domain of unknown function (DUF3413) CH43_3827 PF00884 Sulfatase CH43_383 PF01544 CorA-like Mg2+ transporter protein CH43_3830 PF05638 Type VI secretion system effector, Hcp CH43_3834 PF00232 Glycosyl hydrolase family 1 CH43_3836 PF01380 SIS domain CH43_3836 PF01418 Helix-turn-helix domain, rpiR family CH43_3837 PF07484 Phage Tail Collar Domain CH43_384 PF09370 Phosphoenolpyruvate hydrolase-like CH43_3840 PF04865 Baseplate J-like protein CH43_3849 PF17482 Phage tail sheath C-terminal domain CH43_3849 PF04984 Phage tail sheath protein subtilisin-like domain CH43_3853 PF01261 Xylose isomerase-like TIM barrel CH43_3854 PF08220 DeoR-like helix-turn-helix domain CH43_3854 PF00455 DeoR C terminal sensor domain CH43_3855 PF00596 Class II Aldolase and Adducin N-terminal domain CH43_3856 PF17042 Nucleotide-binding C-terminal domain CH43_3856 PF07005 Sugar-binding N-terminal domain CH43_3857 PF06530 Phage antitermination protein Q CH43_3858 PF00717 Peptidase S24-like CH43_3858 PF01381 Helix-turn-helix CH43_3859 PF06183 DinI-like family CH43_3861 PF01278 Omptin family CH43_3862 PF02743 Cache domain CH43_3862 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH43_3862 PF00672 HAMP domain CH43_3863 PF12706 Beta-lactamase superfamily domain CH43_3865 PF00144 Beta-lactamase CH43_3868 PF00267 Gram-negative porin CH43_387 PF00580 UvrD/REP helicase N-terminal domain CH43_387 PF13361 UvrD-like helicase C-terminal domain CH43_3872 PF16359 RcsD-ABL domain CH43_3872 PF01627 Hpt domain CH43_3872 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_3873 PF01627 Hpt domain CH43_3873 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_3873 PF16359 RcsD-ABL domain CH43_3874 PF00196 Bacterial regulatory proteins, luxR family CH43_3874 PF00072 Response regulator receiver domain CH43_3875 PF00072 Response regulator receiver domain CH43_3875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_3875 PF00512 His Kinase A (phospho-acceptor) domain CH43_3875 PF09456 RcsC Alpha-Beta-Loop (ABL) CH43_3876 PF03989 DNA gyrase C-terminal domain, beta-propeller CH43_3876 PF00521 DNA gyrase/topoisomerase IV, subunit A CH43_3878 PF00317 Ribonucleotide reductase, all-alpha domain CH43_3878 PF02867 Ribonucleotide reductase, barrel domain CH43_3878 PF03477 ATP cone domain CH43_3879 PF00268 Ribonucleotide reductase, small chain CH43_388 PF13419 Haloacid dehalogenase-like hydrolase CH43_3880 PF00111 2Fe-2S iron-sulfur cluster binding domain CH43_3881 PF03974 Ecotin CH43_3882 PF00994 Probable molybdopterin binding domain CH43_3883 PF03222 Tryptophan/tyrosine permease family CH43_3884 PF07437 YfaZ precursor CH43_3885 PF00199 Catalase CH43_3885 PF06628 Catalase-related immune-responsive CH43_3886 PF13307 Helicase C-terminal domain CH43_3886 PF06733 DEAD_2 CH43_3887 PF00267 Gram-negative porin CH43_3888 PF00892 EamA-like transporter family CH43_389 PF02899 Phage integrase, N-terminal SAM-like domain CH43_389 PF00589 Phage integrase family CH43_3890 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH43_3890 PF01276 Orn/Lys/Arg decarboxylase, major domain CH43_3890 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH43_3891 PF00872 Transposase, Mutator family CH43_3892 PF01276 Orn/Lys/Arg decarboxylase, major domain CH43_3892 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH43_3892 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH43_3893 PF13520 Amino acid permease CH43_3894 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3895 PF00005 ABC transporter CH43_3896 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3897 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH43_3898 PF00581 Rhodanese-like domain CH43_39 PF04073 Aminoacyl-tRNA editing domain CH43_390 PF04340 Protein of unknown function, DUF484 CH43_3901 PF00005 ABC transporter CH43_3902 PF00005 ABC transporter CH43_3903 PF02653 Branched-chain amino acid transport system / permease component CH43_3904 PF02653 Branched-chain amino acid transport system / permease component CH43_3905 PF00158 Sigma-54 interaction domain CH43_3905 PF13188 PAS domain CH43_3905 PF02954 Bacterial regulatory protein, Fis family CH43_3906 PF07308 Protein of unknown function (DUF1456) CH43_3907 PF00528 Binding-protein-dependent transport system inner membrane component CH43_3908 PF00528 Binding-protein-dependent transport system inner membrane component CH43_391 PF01678 Diaminopimelate epimerase CH43_3910 PF00005 ABC transporter CH43_3911 PF04226 Transglycosylase associated protein CH43_3913 PF01844 HNH endonuclease CH43_3914 PF01928 CYTH domain CH43_3915 PF09330 D-lactate dehydrogenase, membrane binding CH43_3915 PF01565 FAD binding domain CH43_3916 PF00768 D-alanyl-D-alanine carboxypeptidase CH43_3918 PF01207 Dihydrouridine synthase (Dus) CH43_392 PF13627 Prokaryotic lipoprotein-attachment site CH43_3921 PF03825 Nucleoside H+ symporter CH43_3922 PF01048 Phosphorylase superfamily CH43_3924 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_3924 PF03466 LysR substrate binding domain CH43_3925 PF02028 BCCT, betaine/carnitine/choline family transporter CH43_3926 PF13977 BetI-type transcriptional repressor, C-terminal CH43_3926 PF00440 Bacterial regulatory proteins, tetR family CH43_3927 PF00171 Aldehyde dehydrogenase family CH43_3928 PF05199 GMC oxidoreductase CH43_3928 PF00732 GMC oxidoreductase CH43_3929 PF01797 Transposase IS200 like CH43_393 PF01491 Frataxin-like domain CH43_3930 PF01027 Inhibitor of apoptosis-promoting Bax1 CH43_3931 PF02391 MoaE protein CH43_3932 PF02597 ThiS family CH43_3933 PF01967 MoaC family CH43_3934 PF04055 Radical SAM superfamily CH43_3934 PF06463 Molybdenum Cofactor Synthesis C CH43_3936 PF01933 Uncharacterised protein family UPF0052 CH43_3937 PF09905 DNA-binding protein VF530 CH43_3938 PF02151 UvrB/uvrC motif CH43_3938 PF17757 UvrB interaction domain CH43_3938 PF04851 Type III restriction enzyme, res subunit CH43_3938 PF00271 Helicase conserved C-terminal domain CH43_3938 PF12344 Ultra-violet resistance protein B CH43_394 PF12633 Adenylate cyclase NT domain CH43_394 PF01295 Adenylate cyclase, class-I CH43_3941 PF08241 Methyltransferase domain CH43_3942 PF00155 Aminotransferase class I and II CH43_3943 PF04055 Radical SAM superfamily CH43_3943 PF06968 Biotin and Thiamin Synthesis associated domain CH43_3944 PF00202 Aminotransferase class-III CH43_3945 PF10282 Lactonase, 7-bladed beta-propeller CH43_3947 PF00005 ABC transporter CH43_3947 PF03459 TOBE domain CH43_3948 PF00528 Binding-protein-dependent transport system inner membrane component CH43_395 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH43_395 PF03900 Porphobilinogen deaminase, C-terminal domain CH43_3950 PF10766 Multidrug efflux pump-associated protein AcrZ CH43_3951 PF03459 TOBE domain CH43_3951 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_3952 PF00005 ABC transporter CH43_3956 PF16363 GDP-mannose 4,6 dehydratase CH43_3957 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH43_3957 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH43_3958 PF00288 GHMP kinases N terminal domain CH43_3958 PF10509 Galactokinase galactose-binding signature CH43_3958 PF08544 GHMP kinases C terminal CH43_396 PF02602 Uroporphyrinogen-III synthase HemD CH43_3960 PF01263 Aldose 1-epimerase CH43_3962 PF00300 Histidine phosphatase superfamily (branch 1) CH43_3965 PF01545 Cation efflux family CH43_3966 PF04973 Nicotinamide mononucleotide transporter CH43_3967 PF02445 Quinolinate synthetase A protein CH43_397 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CH43_3972 PF13174 Tetratricopeptide repeat CH43_3972 PF16331 TolA binding protein trimerisation CH43_3973 PF00691 OmpA family CH43_3974 PF04052 TolB amino-terminal domain CH43_3974 PF07676 WD40-like Beta Propeller Repeat CH43_3975 PF06519 TolA C-terminal CH43_3975 PF06519 TolA C-terminal CH43_3976 PF02472 Biopolymer transport protein ExbD/TolR CH43_3977 PF01618 MotA/TolQ/ExbB proton channel family CH43_3978 PF03061 Thioesterase superfamily CH43_3979 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CH43_398 PF07219 HemY protein N-terminus CH43_398 PF07719 Tetratricopeptide repeat CH43_3980 PF08173 Membrane bound YbgT-like protein CH43_3981 PF02322 Cytochrome bd terminal oxidase subunit II CH43_3982 PF01654 Cytochrome bd terminal oxidase subunit I CH43_3983 PF01797 Transposase IS200 like CH43_3984 PF00549 CoA-ligase CH43_3984 PF02629 CoA binding domain CH43_3985 PF08442 ATP-grasp domain CH43_3985 PF00549 CoA-ligase CH43_3986 PF02817 e3 binding domain CH43_3986 PF00364 Biotin-requiring enzyme CH43_3986 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH43_3987 PF16078 2-oxoglutarate dehydrogenase N-terminus CH43_3987 PF02779 Transketolase, pyrimidine binding domain CH43_3987 PF16870 2-oxoglutarate dehydrogenase C-terminal CH43_3987 PF00676 Dehydrogenase E1 component CH43_3988 PF13085 2Fe-2S iron-sulfur cluster binding domain CH43_3989 PF02910 Fumarate reductase flavoprotein C-term CH43_3989 PF00890 FAD binding domain CH43_3990 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH43_3991 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH43_3992 PF00285 Citrate synthase, C-terminal domain CH43_3993 PF01025 GrpE CH43_3994 PF01513 ATP-NAD kinase CH43_3995 PF02463 RecF/RecN/SMC N terminal domain CH43_3996 PF04355 SmpA / OmlA family CH43_3997 PF03658 RnfH family Ubiquitin CH43_3998 PF03364 Polyketide cyclase / dehydrase and lipid transport CH43_3999 PF01668 SmpB protein CH43_4 PF00248 Aldo/keto reductase family CH43_4001 PF00589 Phage integrase family CH43_4001 PF13356 Arm DNA-binding domain CH43_4011 PF05973 Phage derived protein Gp49-like (DUF891) CH43_4013 PF02796 Helix-turn-helix domain of resolvase CH43_4013 PF00665 Integrase core domain CH43_4014 PF01695 IstB-like ATP binding protein CH43_4015 PF13356 Arm DNA-binding domain CH43_4015 PF00589 Phage integrase family CH43_4016 PF01527 Transposase CH43_4018 PF12697 Alpha/beta hydrolase family CH43_4020 PF01402 Ribbon-helix-helix protein, copG family CH43_4021 PF00258 Flavodoxin CH43_4022 PF01475 Ferric uptake regulator family CH43_4023 PF00728 Glycosyl hydrolase family 20, catalytic domain CH43_4023 PF02838 Glycosyl hydrolase family 20, domain 2 CH43_4023 PF03173 Putative carbohydrate binding domain CH43_4023 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH43_4024 PF02838 Glycosyl hydrolase family 20, domain 2 CH43_4024 PF00728 Glycosyl hydrolase family 20, catalytic domain CH43_4024 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH43_4024 PF03173 Putative carbohydrate binding domain CH43_4025 PF03573 outer membrane porin, OprD family CH43_4026 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH43_4026 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH43_4027 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH43_4027 PF00367 phosphotransferase system, EIIB CH43_4027 PF02378 Phosphotransferase system, EIIC CH43_4028 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH43_4029 PF01979 Amidohydrolase family CH43_4030 PF00480 ROK family CH43_4030 PF01047 MarR family CH43_4031 PF13344 Haloacid dehalogenase-like hydrolase CH43_4032 PF13537 Glutamine amidotransferase domain CH43_4032 PF00733 Asparagine synthase CH43_4039 PF01494 FAD binding domain CH43_4040 PF04055 Radical SAM superfamily CH43_4040 PF01938 TRAM domain CH43_4040 PF00919 Uncharacterized protein family UPF0004 CH43_4041 PF02562 PhoH-like protein CH43_4042 PF02130 Uncharacterized protein family UPF0054 CH43_4043 PF00571 CBS domain CH43_4043 PF03471 Transporter associated domain CH43_4044 PF00795 Carbon-nitrogen hydrolase CH43_4045 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH43_4046 PF00528 Binding-protein-dependent transport system inner membrane component CH43_4047 PF00528 Binding-protein-dependent transport system inner membrane component CH43_4048 PF00005 ABC transporter CH43_4049 PF07295 Zinc-ribbon containing domain CH43_405 PF00324 Amino acid permease CH43_4050 PF00133 tRNA synthetases class I (I, L, M and V) CH43_4050 PF13603 Leucyl-tRNA synthetase, Domain 2 CH43_4050 PF08264 Anticodon-binding domain of tRNA CH43_4051 PF04390 Lipopolysaccharide-assembly CH43_4052 PF06144 DNA polymerase III, delta subunit CH43_4052 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH43_4053 PF01467 Cytidylyltransferase-like CH43_4055 PF02590 Predicted SPOUT methyltransferase CH43_4056 PF03717 Penicillin-binding Protein dimerisation domain CH43_4056 PF00905 Penicillin binding protein transpeptidase domain CH43_4057 PF01098 Cell cycle protein CH43_4058 PF05036 Sporulation related domain CH43_4058 PF03330 Lytic transglycolase CH43_4059 PF07943 Penicillin-binding protein 5, C-terminal domain CH43_4059 PF00768 D-alanyl-D-alanine carboxypeptidase CH43_406 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH43_4060 PF04359 Protein of unknown function (DUF493) CH43_4061 PF03099 Biotin/lipoate A/B protein ligase family CH43_4062 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CH43_4062 PF04055 Radical SAM superfamily CH43_4063 PF02416 mttA/Hcf106 family CH43_4064 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH43_4065 PF00313 'Cold-shock' DNA-binding domain CH43_4066 PF00313 'Cold-shock' DNA-binding domain CH43_4067 PF00196 Bacterial regulatory proteins, luxR family CH43_407 PF06899 WzyE protein, O-antigen assembly polymerase CH43_4072 PF00664 ABC transporter transmembrane region CH43_4072 PF00005 ABC transporter CH43_4074 PF04962 KduI/IolB family CH43_4075 PF01261 Xylose isomerase-like TIM barrel CH43_4076 PF00294 pfkB family carbohydrate kinase CH43_4077 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH43_4077 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH43_4078 PF02653 Branched-chain amino acid transport system / permease component CH43_4079 PF00005 ABC transporter CH43_408 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CH43_4080 PF13407 Periplasmic binding protein domain CH43_4081 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH43_4081 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH43_4082 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH43_4082 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH43_4083 PF00205 Thiamine pyrophosphate enzyme, central domain CH43_4083 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH43_4083 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH43_4084 PF00171 Aldehyde dehydrogenase family CH43_4089 PF00207 Alpha-2-macroglobulin family CH43_4089 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CH43_4089 PF07703 Alpha-2-macroglobulin bait region domain CH43_4089 PF01835 MG2 domain CH43_4089 PF17962 Bacterial macroglobulin domain 6 CH43_4089 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CH43_4089 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CH43_409 PF01943 Polysaccharide biosynthesis protein CH43_4090 PF00905 Penicillin binding protein transpeptidase domain CH43_4090 PF00912 Transglycosylase CH43_4090 PF06832 Penicillin-Binding Protein C-terminus Family CH43_4091 PF13693 Winged helix-turn-helix DNA-binding CH43_4096 PF05638 Type VI secretion system effector, Hcp CH43_4099 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH43_4099 PF03212 Pertactin CH43_4099 PF03797 Autotransporter beta-domain CH43_4099 PF13018 Extended Signal Peptide of Type V secretion system CH43_410 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH43_4101 PF08007 Cupin superfamily protein CH43_4102 PF00872 Transposase, Mutator family CH43_4106 PF04754 Putative transposase, YhgA-like CH43_4107 PF02796 Helix-turn-helix domain of resolvase CH43_4107 PF00239 Resolvase, N terminal domain CH43_4110 PF18607 ParA helix turn helix domain CH43_4110 PF13614 AAA domain CH43_4111 PF02195 ParB-like nuclease domain CH43_4111 PF08775 ParB family CH43_4114 PF01555 DNA methylase CH43_4116 PF07128 Protein of unknown function (DUF1380) CH43_4119 PF06006 Bacterial protein of unknown function (DUF905) CH43_412 PF00483 Nucleotidyl transferase CH43_4120 PF02195 ParB-like nuclease domain CH43_4121 PF02796 Helix-turn-helix domain of resolvase CH43_4121 PF00665 Integrase core domain CH43_4122 PF01695 IstB-like ATP binding protein CH43_4123 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH43_4124 PF07484 Phage Tail Collar Domain CH43_4124 PF08400 Prophage tail fibre N-terminal CH43_4124 PF07484 Phage Tail Collar Domain CH43_4124 PF03335 Phage tail fibre repeat CH43_4124 PF03335 Phage tail fibre repeat CH43_4124 PF08400 Prophage tail fibre N-terminal CH43_413 PF16363 GDP-mannose 4,6 dehydratase CH43_414 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH43_414 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH43_414 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH43_4149 PF03412 Peptidase C39 family CH43_4149 PF00664 ABC transporter transmembrane region CH43_4149 PF00005 ABC transporter CH43_415 PF02350 UDP-N-acetylglucosamine 2-epimerase CH43_4150 PF17762 HTH domain found in ParB protein CH43_4150 PF02195 ParB-like nuclease domain CH43_4151 PF02195 ParB-like nuclease domain CH43_4151 PF17762 HTH domain found in ParB protein CH43_4152 PF00271 Helicase conserved C-terminal domain CH43_4152 PF17191 RecG wedge domain CH43_4152 PF00270 DEAD/DEAH box helicase CH43_416 PF02706 Chain length determinant protein CH43_4163 PF01797 Transposase IS200 like CH43_4165 PF00268 Ribonucleotide reductase, small chain CH43_4166 PF03477 ATP cone domain CH43_4166 PF00317 Ribonucleotide reductase, all-alpha domain CH43_4166 PF02867 Ribonucleotide reductase, barrel domain CH43_417 PF00953 Glycosyl transferase family 4 CH43_4174 PF01051 Initiator Replication protein CH43_418 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH43_418 PF07497 Rho termination factor, RNA-binding domain CH43_418 PF07498 Rho termination factor, N-terminal domain CH43_4182 PF00154 recA bacterial DNA recombination protein CH43_4184 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH43_4184 PF01367 5'-3' exonuclease, C-terminal SAM fold CH43_419 PF00085 Thioredoxin CH43_4190 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH43_4190 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH43_4190 PF14579 Helix-hairpin-helix motif CH43_4190 PF02811 PHP domain CH43_4192 PF11775 Cobalamin biosynthesis protein CobT VWA domain CH43_4192 PF06213 Cobalamin biosynthesis protein CobT CH43_4196 PF09255 Caf1 Capsule antigen CH43_4197 PF00577 Outer membrane usher protein CH43_4197 PF13954 PapC N-terminal domain CH43_4197 PF13953 PapC C-terminal domain CH43_4198 PF02753 Pili assembly chaperone PapD, C-terminal domain CH43_4198 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH43_4199 PF12833 Helix-turn-helix domain CH43_4199 PF06445 GyrI-like small molecule binding domain CH43_42 PF00149 Calcineurin-like phosphoesterase CH43_42 PF02872 5'-nucleotidase, C-terminal domain CH43_420 PF00271 Helicase conserved C-terminal domain CH43_420 PF00270 DEAD/DEAH box helicase CH43_4209 PF00872 Transposase, Mutator family CH43_421 PF02541 Ppx/GppA phosphatase family CH43_4210 PF07916 TraG-like protein, N-terminal region CH43_4211 PF06122 Conjugative relaxosome accessory transposon protein CH43_4212 PF13728 F plasmid transfer operon protein CH43_4213 PF09679 Type-F conjugative transfer system pilin chaperone (TraQ) CH43_4214 PF13728 F plasmid transfer operon protein CH43_4216 PF06986 Type-1V conjugative transfer system mating pair stabilisation CH43_4217 PF09673 Type-F conjugative transfer system pilin assembly protein CH43_4218 PF06834 TraU protein CH43_4219 PF12477 Sex factor F TraW protein N terminal CH43_422 PF13361 UvrD-like helicase C-terminal domain CH43_422 PF00580 UvrD/REP helicase N-terminal domain CH43_4220 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) CH43_4221 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer CH43_4226 PF09676 Type IV conjugative transfer system lipoprotein (TraV) CH43_4227 PF03743 Bacterial conjugation TrbI-like protein CH43_4228 PF06586 TraK protein CH43_4229 PF05309 TraE protein CH43_4230 PF07178 TraL protein CH43_4231 PF05513 TraA CH43_4232 PF00872 Transposase, Mutator family CH43_4233 PF10412 Type IV secretion-system coupling protein DNA-binding domain CH43_4233 PF12615 F sex factor protein N terminal CH43_4234 PF18272 single-stranded DNA binding TraI N-terminal subdomain CH43_4234 PF18340 DNA relaxase TraI 2B/2B-like domain CH43_4234 PF08751 TrwC relaxase CH43_4234 PF07057 DNA helicase TraI CH43_4235 PF05857 TraX protein CH43_4237 PF13462 Thioredoxin CH43_4237 PF06965 Na+/H+ antiporter 1 CH43_4239 PF02387 IncFII RepA protein family CH43_4241 PF01548 Transposase CH43_4241 PF02371 Transposase IS116/IS110/IS902 family CH43_4244 PF03543 Yersinia/Haemophilus virulence surface antigen CH43_4245 PF05932 Tir chaperone protein (CesT) family CH43_4249 PF12468 Type III secretion system leucine rich repeat protein CH43_4251 PF00872 Transposase, Mutator family CH43_4252 PF05844 YopD protein CH43_4253 PF04888 Secretion system effector C (SseC) like family CH43_4254 PF07720 Tetratricopeptide repeat CH43_4255 PF04792 V antigen (LcrV) protein CH43_4256 PF07216 LcrG protein CH43_4257 PF09621 Type III secretion system regulator (LcrR) CH43_4258 PF00771 FHIPEP family CH43_426 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH43_426 PF02753 Pili assembly chaperone PapD, C-terminal domain CH43_4260 PF09474 Type III secretion system YscX (type_III_YscX) CH43_4262 PF09059 TyeA CH43_4263 PF07201 HrpJ-like domain CH43_4264 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH43_4264 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH43_4264 PF18269 T3SS EscN ATPase C-terminal domain CH43_4265 PF07321 Type III secretion protein YscO CH43_4266 PF02120 Flagellar hook-length control protein FliK CH43_4267 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH43_4268 PF00813 FliP family CH43_4269 PF01313 Bacterial export proteins, family 3 CH43_427 PF00577 Outer membrane usher protein CH43_427 PF13953 PapC C-terminal domain CH43_427 PF13954 PapC N-terminal domain CH43_4270 PF01311 Bacterial export proteins, family 1 CH43_4271 PF01312 FlhB HrpN YscU SpaS Family CH43_4273 PF12833 Helix-turn-helix domain CH43_4273 PF02311 AraC-like ligand binding domain CH43_4274 PF05932 Tir chaperone protein (CesT) family CH43_4276 PF16693 Inner membrane component of T3SS, periplasmic domain CH43_4276 PF16697 Inner membrane component of T3SS, cytoplasmic domain CH43_4277 PF08988 Type III secretion system, cytoplasmic E component of needle CH43_4278 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF CH43_4279 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) CH43_4280 PF09025 YopR, type III needle-polymerisation regulator CH43_4281 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI CH43_4282 PF01514 Secretory protein of YscJ/FliF family CH43_4283 PF06578 YOP proteins translocation protein K (YscK) CH43_4284 PF02108 Flagellar assembly protein FliH CH43_4285 PF09013 YopH, N-terminal CH43_4286 PF01527 Transposase CH43_4288 PF02796 Helix-turn-helix domain of resolvase CH43_4288 PF00665 Integrase core domain CH43_4289 PF01695 IstB-like ATP binding protein CH43_429 PF02753 Pili assembly chaperone PapD, C-terminal domain CH43_429 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH43_4290 PF13683 Integrase core domain CH43_4290 PF13276 HTH-like domain CH43_4291 PF00102 Protein-tyrosine phosphatase CH43_4291 PF09013 YopH, N-terminal CH43_4292 PF13683 Integrase core domain CH43_4292 PF13276 HTH-like domain CH43_4294 PF09632 Rac1-binding domain CH43_4294 PF00069 Protein kinase domain CH43_43 PF00149 Calcineurin-like phosphoesterase CH43_43 PF02872 5'-nucleotidase, C-terminal domain CH43_430 PF01320 Colicin immunity protein / pyocin immunity protein CH43_4300 PF02387 IncFII RepA protein family CH43_4301 PF10723 Replication regulatory protein RepB CH43_4307 PF03895 YadA-like membrane anchor domain CH43_4307 PF05662 Coiled stalk of trimeric autotransporter adhesin CH43_4307 PF05658 Head domain of trimeric autotransporter adhesin CH43_4309 PF05662 Coiled stalk of trimeric autotransporter adhesin CH43_4309 PF05658 Head domain of trimeric autotransporter adhesin CH43_4309 PF03895 YadA-like membrane anchor domain CH43_4310 PF01526 Tn3 transposase DDE domain CH43_4310 PF13700 Domain of unknown function (DUF4158) CH43_4312 PF00239 Resolvase, N terminal domain CH43_4312 PF02796 Helix-turn-helix domain of resolvase CH43_4315 PF01527 Transposase CH43_4316 PF13276 HTH-like domain CH43_4316 PF13683 Integrase core domain CH43_4318 PF01695 IstB-like ATP binding protein CH43_4319 PF00665 Integrase core domain CH43_4320 PF13276 HTH-like domain CH43_4320 PF13683 Integrase core domain CH43_4321 PF05932 Tir chaperone protein (CesT) family CH43_4322 PF03545 Yersinia virulence determinant (YopE) CH43_4322 PF09020 YopE, N terminal CH43_4324 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CH43_4326 PF18090 Centromere-binding protein HTH domain CH43_4326 PF02195 ParB-like nuclease domain CH43_4327 PF13614 AAA domain CH43_4329 PF13276 HTH-like domain CH43_4329 PF13333 Integrase core domain CH43_4329 PF00665 Integrase core domain CH43_4331 PF05818 Enterobacterial TraT complement resistance protein CH43_435 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH43_435 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH43_436 PF03466 LysR substrate binding domain CH43_436 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_44 PF00149 Calcineurin-like phosphoesterase CH43_44 PF02872 5'-nucleotidase, C-terminal domain CH43_441 PF00291 Pyridoxal-phosphate dependent enzyme CH43_441 PF00585 C-terminal regulatory domain of Threonine dehydratase CH43_442 PF00920 Dehydratase family CH43_443 PF01063 Amino-transferase class IV CH43_445 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH43_445 PF00205 Thiamine pyrophosphate enzyme, central domain CH43_445 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH43_446 PF01078 Magnesium chelatase, subunit ChlI CH43_446 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH43_447 PF04219 Protein of unknown function, DUF CH43_448 PF02653 Branched-chain amino acid transport system / permease component CH43_449 PF03466 LysR substrate binding domain CH43_449 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_450 PF02653 Branched-chain amino acid transport system / permease component CH43_451 PF00005 ABC transporter CH43_452 PF13407 Periplasmic binding protein domain CH43_461 PF01808 AICARFT/IMPCHase bienzyme CH43_461 PF02142 MGS-like domain CH43_462 PF02844 Phosphoribosylglycinamide synthetase, N domain CH43_462 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH43_462 PF02843 Phosphoribosylglycinamide synthetase, C domain CH43_463 PF07356 Protein of unknown function (DUF1481) CH43_464 PF00216 Bacterial DNA-binding protein CH43_465 PF04222 Protein of unknown function (DUF416) CH43_466 PF04493 Endonuclease V CH43_467 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH43_469 PF09297 NADH pyrophosphatase zinc ribbon domain CH43_469 PF00293 NUDIX domain CH43_47 PF00999 Sodium/hydrogen exchanger family CH43_47 PF02254 TrkA-N domain CH43_470 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH43_471 PF01964 Radical SAM ThiC family CH43_471 PF13667 ThiC-associated domain CH43_472 PF02581 Thiamine monophosphate synthase CH43_473 PF00899 ThiF family CH43_479 PF00623 RNA polymerase Rpb1, domain 2 CH43_479 PF05000 RNA polymerase Rpb1, domain 4 CH43_479 PF04997 RNA polymerase Rpb1, domain 1 CH43_479 PF04998 RNA polymerase Rpb1, domain 5 CH43_479 PF04983 RNA polymerase Rpb1, domain 3 CH43_48 PF00294 pfkB family carbohydrate kinase CH43_480 PF04560 RNA polymerase Rpb2, domain 7 CH43_480 PF00562 RNA polymerase Rpb2, domain 6 CH43_480 PF10385 RNA polymerase beta subunit external 1 domain CH43_480 PF04561 RNA polymerase Rpb2, domain 2 CH43_480 PF04565 RNA polymerase Rpb2, domain 3 CH43_480 PF04563 RNA polymerase beta subunit CH43_482 PF00542 Ribosomal protein L7/L12 C-terminal domain CH43_482 PF16320 Ribosomal protein L7/L12 dimerisation domain CH43_483 PF00466 Ribosomal protein L10 CH43_484 PF00687 Ribosomal protein L1p/L10e family CH43_485 PF03946 Ribosomal protein L11, N-terminal domain CH43_485 PF00298 Ribosomal protein L11, RNA binding domain CH43_486 PF02357 Transcription termination factor nusG CH43_486 PF00467 KOW motif CH43_487 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH43_488 PF03143 Elongation factor Tu C-terminal domain CH43_488 PF00009 Elongation factor Tu GTP binding domain CH43_488 PF03144 Elongation factor Tu domain 2 CH43_49 PF02706 Chain length determinant protein CH43_493 PF01695 IstB-like ATP binding protein CH43_494 PF01695 IstB-like ATP binding protein CH43_495 PF00665 Integrase core domain CH43_495 PF02796 Helix-turn-helix domain of resolvase CH43_496 PF12146 Serine aminopeptidase, S33 CH43_497 PF00324 Amino acid permease CH43_498 PF00221 Aromatic amino acid lyase CH43_499 PF17392 Urocanase C-terminal domain CH43_499 PF17391 Urocanase N-terminal domain CH43_499 PF01175 Urocanase Rossmann-like domain CH43_5 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_5 PF03466 LysR substrate binding domain CH43_50 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH43_50 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH43_50 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH43_50 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH43_500 PF00291 Pyridoxal-phosphate dependent enzyme CH43_501 PF00156 Phosphoribosyl transferase domain CH43_504 PF01497 Periplasmic binding protein CH43_505 PF01032 FecCD transport family CH43_506 PF01032 FecCD transport family CH43_508 PF00005 ABC transporter CH43_51 PF00535 Glycosyl transferase family 2 CH43_511 PF13737 Transposase DDE domain CH43_512 PF13737 Transposase DDE domain CH43_513 PF04606 Ogr/Delta-like zinc finger CH43_515 PF14659 Phage integrase, N-terminal SAM-like domain CH43_515 PF13356 Arm DNA-binding domain CH43_515 PF00589 Phage integrase family CH43_517 PF12833 Helix-turn-helix domain CH43_518 PF02653 Branched-chain amino acid transport system / permease component CH43_519 PF00005 ABC transporter CH43_52 PF01050 Mannose-6-phosphate isomerase CH43_52 PF00483 Nucleotidyl transferase CH43_520 PF13407 Periplasmic binding protein domain CH43_522 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH43_522 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH43_524 PF02753 Pili assembly chaperone PapD, C-terminal domain CH43_524 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH43_525 PF13954 PapC N-terminal domain CH43_525 PF00577 Outer membrane usher protein CH43_525 PF13953 PapC C-terminal domain CH43_526 PF13953 PapC C-terminal domain CH43_526 PF00577 Outer membrane usher protein CH43_526 PF13954 PapC N-terminal domain CH43_527 PF00419 Fimbrial protein CH43_528 PF01757 Acyltransferase family CH43_53 PF01370 NAD dependent epimerase/dehydratase family CH43_530 PF13276 HTH-like domain CH43_530 PF13333 Integrase core domain CH43_530 PF00665 Integrase core domain CH43_531 PF02219 Methylenetetrahydrofolate reductase CH43_532 PF00742 Homoserine dehydrogenase CH43_532 PF00696 Amino acid kinase family CH43_532 PF03447 Homoserine dehydrogenase, NAD binding domain CH43_533 PF01053 Cys/Met metabolism PLP-dependent enzyme CH43_534 PF01340 Met Apo-repressor, MetJ CH43_535 PF05360 yiaA/B two helix domain CH43_536 PF01197 Ribosomal protein L31 CH43_537 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH43_537 PF18074 Primosomal protein N C-terminal domain CH43_537 PF17764 3′ DNA-binding domain (3′BD) CH43_537 PF00271 Helicase conserved C-terminal domain CH43_537 PF00270 DEAD/DEAH box helicase CH43_539 PF00356 Bacterial regulatory proteins, lacI family CH43_54 PF16363 GDP-mannose 4,6 dehydratase CH43_540 PF05036 Sporulation related domain CH43_541 PF00227 Proteasome subunit CH43_542 PF00004 ATPase family associated with various cellular activities (AAA) CH43_542 PF10431 C-terminal, D2-small domain, of ClpB protein CH43_542 PF07724 AAA domain (Cdc48 subfamily) CH43_543 PF01040 UbiA prenyltransferase family CH43_544 PF03737 Aldolase/RraA CH43_547 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH43_547 PF00529 HlyD membrane-fusion protein of T1SS CH43_548 PF03412 Peptidase C39 family CH43_548 PF00005 ABC transporter CH43_548 PF00664 ABC transporter transmembrane region CH43_55 PF16363 GDP-mannose 4,6 dehydratase CH43_550 PF06005 Cell division protein ZapB CH43_551 PF00230 Major intrinsic protein CH43_552 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH43_552 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH43_553 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH43_554 PF00970 Oxidoreductase FAD-binding domain CH43_554 PF00175 Oxidoreductase NAD-binding domain CH43_555 PF05656 Protein of unknown function (DUF805) CH43_556 PF07305 Protein of unknown function (DUF1454) CH43_557 PF00121 Triosephosphate isomerase CH43_558 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_558 PF03466 LysR substrate binding domain CH43_559 PF02585 GlcNAc-PI de-N-acetylase CH43_56 PF00534 Glycosyl transferases group 1 CH43_56 PF13439 Glycosyltransferase Family 4 CH43_560 PF03737 Aldolase/RraA CH43_566 PF00365 Phosphofructokinase CH43_567 PF01545 Cation efflux family CH43_567 PF16916 Dimerisation domain of Zinc Transporter CH43_568 PF04754 Putative transposase, YhgA-like CH43_569 PF07813 LTXXQ motif family protein CH43_570 PF00486 Transcriptional regulatory protein, C terminal CH43_570 PF00072 Response regulator receiver domain CH43_571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_571 PF00672 HAMP domain CH43_571 PF00512 His Kinase A (phospho-acceptor) domain CH43_571 PF16527 Two-component sensor protein CpxA, periplasmic domain CH43_572 PF12833 Helix-turn-helix domain CH43_572 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH43_572 PF02805 Metal binding domain of Ada CH43_572 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH43_573 PF00588 SpoU rRNA Methylase family CH43_574 PF06426 Serine acetyltransferase, N-terminal CH43_574 PF00132 Bacterial transferase hexapeptide (six repeats) CH43_575 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH43_575 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH43_576 PF02556 Preprotein translocase subunit SecB CH43_577 PF00462 Glutaredoxin CH43_578 PF00581 Rhodanese-like domain CH43_579 PF01676 Metalloenzyme superfamily CH43_579 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH43_580 PF01551 Peptidase family M23 CH43_581 PF04748 Divergent polysaccharide deacetylase CH43_582 PF04748 Divergent polysaccharide deacetylase CH43_583 PF00107 Zinc-binding dehydrogenase CH43_583 PF08240 Alcohol dehydrogenase GroES-like domain CH43_584 PF00155 Aminotransferase class I and II CH43_585 PF01370 NAD dependent epimerase/dehydratase family CH43_586 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH43_587 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH43_588 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH43_589 PF00535 Glycosyl transferase family 2 CH43_590 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH43_590 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH43_590 PF06827 Zinc finger found in FPG and IleRS CH43_591 PF01467 Cytidylyltransferase-like CH43_592 PF00471 Ribosomal protein L33 CH43_593 PF00830 Ribosomal L28 family CH43_594 PF04002 RadC-like JAB domain CH43_595 PF04127 DNA / pantothenate metabolism flavoprotein CH43_595 PF02441 Flavoprotein CH43_596 PF00692 dUTPase CH43_597 PF00440 Bacterial regulatory proteins, tetR family CH43_598 PF00156 Phosphoribosyl transferase domain CH43_599 PF03725 3' exoribonuclease family, domain 2 CH43_599 PF01138 3' exoribonuclease family, domain 1 CH43_6 PF02796 Helix-turn-helix domain of resolvase CH43_6 PF00665 Integrase core domain CH43_600 PF08340 Domain of unknown function (DUF1732) CH43_600 PF03755 YicC-like family, N-terminal region CH43_601 PF03458 UPF0126 domain CH43_602 PF03120 NAD-dependent DNA ligase OB-fold domain CH43_602 PF01653 NAD-dependent DNA ligase adenylation domain CH43_603 PF00625 Guanylate kinase CH43_604 PF01192 RNA polymerase Rpb6 CH43_605 PF13291 ACT domain CH43_605 PF02824 TGS domain CH43_605 PF04607 Region found in RelA / SpoT proteins CH43_606 PF12105 SpoU, rRNA methylase, C-terminal CH43_606 PF00588 SpoU rRNA Methylase family CH43_607 PF00271 Helicase conserved C-terminal domain CH43_607 PF00270 DEAD/DEAH box helicase CH43_607 PF17191 RecG wedge domain CH43_608 PF03616 Sodium/glutamate symporter CH43_609 PF00860 Permease family CH43_610 PF05170 AsmA family CH43_611 PF09500 Putative thioesterase (yiiD_Cterm) CH43_611 PF00583 Acetyltransferase (GNAT) family CH43_612 PF00665 Integrase core domain CH43_612 PF02796 Helix-turn-helix domain of resolvase CH43_613 PF01695 IstB-like ATP binding protein CH43_614 PF02580 D-Tyr-tRNA(Tyr) deacylase CH43_615 PF03631 Virulence factor BrkB CH43_616 PF13419 Haloacid dehalogenase-like hydrolase CH43_618 PF03951 Glutamine synthetase, beta-Grasp domain CH43_618 PF00120 Glutamine synthetase, catalytic domain CH43_619 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_619 PF00989 PAS fold CH43_619 PF00512 His Kinase A (phospho-acceptor) domain CH43_620 PF00158 Sigma-54 interaction domain CH43_620 PF00072 Response regulator receiver domain CH43_620 PF02954 Bacterial regulatory protein, Fis family CH43_621 PF06969 HemN C-terminal domain CH43_621 PF04055 Radical SAM superfamily CH43_622 PF04220 Der GTPase activator (YihI) CH43_623 PF01926 50S ribosome-binding GTPase CH43_624 PF01612 3'-5' exonuclease CH43_624 PF00476 DNA polymerase family A CH43_624 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH43_624 PF01367 5'-3' exonuclease, C-terminal SAM fold CH43_625 PF01323 DSBA-like thioredoxin domain CH43_626 PF01636 Phosphotransferase enzyme family CH43_627 PF06288 Protein of unknown function (DUF1040) CH43_628 PF12804 MobA-like NTP transferase domain CH43_629 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH43_63 PF01370 NAD dependent epimerase/dehydratase family CH43_630 PF00872 Transposase, Mutator family CH43_635 PF07729 FCD domain CH43_635 PF00392 Bacterial regulatory proteins, gntR family CH43_637 PF07690 Major Facilitator Superfamily CH43_64 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH43_640 PF05025 RbsD / FucU transport protein family CH43_641 PF02705 K+ potassium transporter CH43_642 PF07728 AAA domain (dynein-related subfamily) CH43_642 PF12592 Protein of unknown function (DUF3763) CH43_642 PF17868 AAA lid domain CH43_643 PF05762 VWA domain containing CoxE-like protein CH43_644 PF03590 Aspartate-ammonia ligase CH43_645 PF01037 Lrp/AsnC ligand binding domain CH43_646 PF00258 Flavodoxin CH43_647 PF01134 Glucose inhibited division protein A CH43_647 PF13932 GidA associated domain CH43_648 PF02527 rRNA small subunit methyltransferase G CH43_649 PF03899 ATP synthase I chain CH43_65 PF16363 GDP-mannose 4,6 dehydratase CH43_650 PF00119 ATP synthase A chain CH43_651 PF00137 ATP synthase subunit C CH43_652 PF00430 ATP synthase B/B' CF(0) CH43_653 PF00213 ATP synthase delta (OSCP) subunit CH43_654 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH43_654 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH43_654 PF00306 ATP synthase alpha/beta chain, C terminal domain CH43_655 PF00231 ATP synthase CH43_656 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH43_656 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH43_657 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH43_657 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH43_658 PF12804 MobA-like NTP transferase domain CH43_658 PF00132 Bacterial transferase hexapeptide (six repeats) CH43_659 PF01380 SIS domain CH43_66 PF00483 Nucleotidyl transferase CH43_660 PF12849 PBP superfamily domain CH43_661 PF00528 Binding-protein-dependent transport system inner membrane component CH43_662 PF00528 Binding-protein-dependent transport system inner membrane component CH43_663 PF00005 ABC transporter CH43_664 PF01895 PhoU domain CH43_666 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH43_667 PF00528 Binding-protein-dependent transport system inner membrane component CH43_668 PF00528 Binding-protein-dependent transport system inner membrane component CH43_669 PF13419 Haloacid dehalogenase-like hydrolase CH43_67 PF00175 Oxidoreductase NAD-binding domain CH43_67 PF00970 Oxidoreductase FAD-binding domain CH43_67 PF00111 2Fe-2S iron-sulfur cluster binding domain CH43_670 PF00860 Permease family CH43_673 PF07055 Enoyl reductase FAD binding domain CH43_673 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH43_673 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH43_674 PF10396 GTP-binding protein TrmE N-terminus CH43_674 PF01926 50S ribosome-binding GTPase CH43_674 PF12631 MnmE helical domain CH43_675 PF14849 YidC periplasmic domain CH43_675 PF02096 60Kd inner membrane protein CH43_676 PF01809 Putative membrane protein insertion efficiency factor CH43_677 PF00825 Ribonuclease P CH43_678 PF00468 Ribosomal protein L34 CH43_68 PF00762 Ferrochelatase CH43_680 PF00308 Bacterial dnaA protein CH43_680 PF08299 Bacterial dnaA protein helix-turn-helix CH43_680 PF11638 DnaA N-terminal domain CH43_681 PF02767 DNA polymerase III beta subunit, central domain CH43_681 PF00712 DNA polymerase III beta subunit, N-terminal domain CH43_681 PF02768 DNA polymerase III beta subunit, C-terminal domain CH43_682 PF02463 RecF/RecN/SMC N terminal domain CH43_683 PF00986 DNA gyrase B subunit, carboxyl terminus CH43_683 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_683 PF00204 DNA gyrase B CH43_683 PF01751 Toprim domain CH43_683 PF18053 DNA gyrase B subunit insert domain CH43_685 PF13276 HTH-like domain CH43_685 PF00665 Integrase core domain CH43_685 PF13333 Integrase core domain CH43_687 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH43_688 PF13291 ACT domain CH43_688 PF00291 Pyridoxal-phosphate dependent enzyme CH43_689 PF07676 WD40-like Beta Propeller Repeat CH43_689 PF12566 Protein of unknown function (DUF3748) CH43_69 PF05191 Adenylate kinase, active site lid CH43_690 PF12566 Protein of unknown function (DUF3748) CH43_690 PF07676 WD40-like Beta Propeller Repeat CH43_691 PF07119 Protein of unknown function (DUF1375) CH43_692 PF00011 Hsp20/alpha crystallin family CH43_693 PF00011 Hsp20/alpha crystallin family CH43_694 PF02080 TrkA-C domain CH43_694 PF06826 Predicted Permease Membrane Region CH43_695 PF00155 Aminotransferase class I and II CH43_697 PF00128 Alpha amylase, catalytic domain CH43_698 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH43_698 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH43_7 PF01695 IstB-like ATP binding protein CH43_70 PF00183 Hsp90 protein CH43_70 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_700 PF00691 OmpA family CH43_700 PF13488 Glycine zipper CH43_702 PF03352 Methyladenine glycosylase CH43_704 PF02091 Glycyl-tRNA synthetase alpha subunit CH43_705 PF02092 Glycyl-tRNA synthetase beta subunit CH43_705 PF05746 DALR anticodon binding domain CH43_706 PF11254 Protein of unknown function (DUF3053) CH43_707 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH43_707 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH43_707 PF02378 Phosphotransferase system, EIIC CH43_708 PF08125 Mannitol dehydrogenase C-terminal domain CH43_708 PF01232 Mannitol dehydrogenase Rossmann domain CH43_709 PF05068 Mannitol repressor CH43_71 PF13662 Toprim domain CH43_71 PF02132 RecR protein CH43_711 PF10928 Protein of unknown function (DUF2810) CH43_715 PF02203 Tar ligand binding domain homologue CH43_715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH43_715 PF00672 HAMP domain CH43_716 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH43_716 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH43_717 PF02634 FdhD/NarQ family CH43_718 PF00384 Molybdopterin oxidoreductase CH43_718 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH43_718 PF01568 Molydopterin dinucleotide binding domain CH43_719 PF01568 Molydopterin dinucleotide binding domain CH43_719 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH43_719 PF00384 Molybdopterin oxidoreductase CH43_72 PF02575 YbaB/EbfC DNA-binding family CH43_720 PF09163 Formate dehydrogenase N, transmembrane CH43_720 PF13247 4Fe-4S dicluster domain CH43_721 PF01292 Prokaryotic cytochrome b561 CH43_722 PF04216 Protein involved in formate dehydrogenase formation CH43_723 PF12390 Selenocysteine synthase N terminal CH43_723 PF03841 L-seryl-tRNA selenium transferase CH43_724 PF03144 Elongation factor Tu domain 2 CH43_724 PF09106 Elongation factor SelB, winged helix CH43_724 PF09107 Elongation factor SelB, winged helix CH43_724 PF00009 Elongation factor Tu GTP binding domain CH43_725 PF01526 Tn3 transposase DDE domain CH43_725 PF13700 Domain of unknown function (DUF4158) CH43_726 PF00872 Transposase, Mutator family CH43_73 PF12170 DNA polymerase III tau subunit V interacting with alpha CH43_73 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH43_73 PF12169 DNA polymerase III subunits gamma and tau domain III CH43_730 PF07690 Major Facilitator Superfamily CH43_731 PF00665 Integrase core domain CH43_731 PF13276 HTH-like domain CH43_731 PF13333 Integrase core domain CH43_733 PF00455 DeoR C terminal sensor domain CH43_733 PF08220 DeoR-like helix-turn-helix domain CH43_734 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH43_734 PF01694 Rhomboid family CH43_735 PF00581 Rhodanese-like domain CH43_736 PF00196 Bacterial regulatory proteins, luxR family CH43_736 PF17874 MalT-like TPR region CH43_737 PF00343 Carbohydrate phosphorylase CH43_738 PF02446 4-alpha-glucanotransferase CH43_739 PF01106 NifU-like domain CH43_739 PF01521 Iron-sulphur cluster biosynthesis CH43_74 PF00156 Phosphoribosyl transferase domain CH43_740 PF00156 Phosphoribosyl transferase domain CH43_741 PF00561 alpha/beta hydrolase fold CH43_742 PF07338 Protein of unknown function (DUF1471) CH43_743 PF09012 FeoC like transcriptional regulator CH43_744 PF02421 Ferrous iron transport protein B CH43_744 PF17910 FeoB cytosolic helical domain CH43_744 PF07664 Ferrous iron transport protein B C terminus CH43_744 PF07670 Nucleoside recognition CH43_745 PF04023 FeoA domain CH43_746 PF16921 Tex protein YqgF-like domain CH43_746 PF09371 Tex-like protein N-terminal domain CH43_746 PF00575 S1 RNA binding domain CH43_746 PF17674 HHH domain CH43_747 PF01272 Transcription elongation factor, GreA/GreB, C-term CH43_747 PF03449 Transcription elongation factor, N-terminal CH43_748 PF00486 Transcriptional regulatory protein, C terminal CH43_748 PF00072 Response regulator receiver domain CH43_749 PF00512 His Kinase A (phospho-acceptor) domain CH43_749 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_749 PF00672 HAMP domain CH43_75 PF04304 Protein of unknown function (DUF454) CH43_750 PF01293 Phosphoenolpyruvate carboxykinase CH43_751 PF01430 Hsp33 protein CH43_752 PF01479 S4 domain CH43_753 PF13419 Haloacid dehalogenase-like hydrolase CH43_754 PF07095 Intracellular growth attenuator protein IgaA CH43_756 PF00293 NUDIX domain CH43_757 PF17092 Penicillin-binding protein OB-like domain CH43_757 PF00912 Transglycosylase CH43_757 PF00905 Penicillin binding protein transpeptidase domain CH43_762 PF03958 Bacterial type II/III secretion system short domain CH43_762 PF00263 Bacterial type II and III secretion system protein CH43_763 PF01202 Shikimate kinase CH43_764 PF01761 3-dehydroquinate synthase CH43_765 PF05036 Sporulation related domain CH43_766 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH43_767 PF00834 Ribulose-phosphate 3 epimerase family CH43_768 PF13419 Haloacid dehalogenase-like hydrolase CH43_769 PF00579 tRNA synthetases class I (W and Y) CH43_77 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH43_77 PF12795 Mechanosensitive ion channel porin domain CH43_77 PF00924 Mechanosensitive ion channel CH43_770 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH43_770 PF14824 Sirohaem biosynthesis protein central CH43_770 PF10414 Sirohaem synthase dimerisation region CH43_771 PF01226 Formate/nitrite transporter CH43_772 PF13806 Rieske-like [2Fe-2S] domain CH43_773 PF04324 BFD-like [2Fe-2S] binding domain CH43_773 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH43_773 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH43_773 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH43_773 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH43_774 PF07969 Amidohydrolase family CH43_775 PF07690 Major Facilitator Superfamily CH43_777 PF00356 Bacterial regulatory proteins, lacI family CH43_778 PF02056 Family 4 glycosyl hydrolase CH43_778 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH43_779 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH43_78 PF02635 DsrE/DsrF-like family CH43_780 PF05872 Bacterial protein of unknown function (DUF853) CH43_781 PF00117 Glutamine amidotransferase class-I CH43_782 PF00202 Aminotransferase class-III CH43_783 PF12805 FUSC-like inner membrane protein yccS CH43_784 PF13545 Crp-like helix-turn-helix domain CH43_784 PF00027 Cyclic nucleotide-binding domain CH43_785 PF02566 OsmC-like protein CH43_787 PF00485 Phosphoribulokinase / Uridine kinase family CH43_788 PF06794 Uncharacterised protein family (UPF0270) CH43_789 PF00561 alpha/beta hydrolase fold CH43_79 PF08361 MAATS-type transcriptional repressor, C-terminal region CH43_79 PF00440 Bacterial regulatory proteins, tetR family CH43_790 PF01810 LysE type translocator CH43_791 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH43_792 PF00005 ABC transporter CH43_793 PF00528 Binding-protein-dependent transport system inner membrane component CH43_794 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CH43_797 PF00535 Glycosyl transferase family 2 CH43_798 PF00005 ABC transporter CH43_798 PF12848 ABC transporter CH43_799 PF02525 Flavodoxin-like fold CH43_80 PF00529 HlyD membrane-fusion protein of T1SS CH43_80 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH43_800 PF02254 TrkA-N domain CH43_800 PF00999 Sodium/hydrogen exchanger family CH43_801 PF09526 Probable metal-binding protein (DUF2387) CH43_802 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH43_803 PF04102 SlyX CH43_804 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH43_804 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH43_805 PF13309 HTH domain CH43_805 PF08348 YheO-like PAS domain CH43_806 PF02635 DsrE/DsrF-like family CH43_807 PF02635 DsrE/DsrF-like family CH43_808 PF04077 DsrH like protein CH43_809 PF00164 Ribosomal protein S12/S23 CH43_81 PF00873 AcrB/AcrD/AcrF family CH43_810 PF00177 Ribosomal protein S7p/S5e CH43_811 PF03764 Elongation factor G, domain IV CH43_811 PF00009 Elongation factor Tu GTP binding domain CH43_811 PF00679 Elongation factor G C-terminus CH43_811 PF14492 Elongation Factor G, domain II CH43_811 PF03144 Elongation factor Tu domain 2 CH43_812 PF03144 Elongation factor Tu domain 2 CH43_812 PF00009 Elongation factor Tu GTP binding domain CH43_812 PF03143 Elongation factor Tu C-terminal domain CH43_813 PF01797 Transposase IS200 like CH43_814 PF04324 BFD-like [2Fe-2S] binding domain CH43_815 PF00210 Ferritin-like domain CH43_816 PF00338 Ribosomal protein S10p/S20e CH43_817 PF00297 Ribosomal protein L3 CH43_818 PF00573 Ribosomal protein L4/L1 family CH43_819 PF00276 Ribosomal protein L23 CH43_82 PF01197 Ribosomal protein L31 CH43_820 PF00181 Ribosomal Proteins L2, RNA binding domain CH43_820 PF03947 Ribosomal Proteins L2, C-terminal domain CH43_821 PF00203 Ribosomal protein S19 CH43_822 PF00237 Ribosomal protein L22p/L17e CH43_823 PF07650 KH domain CH43_823 PF00189 Ribosomal protein S3, C-terminal domain CH43_824 PF00252 Ribosomal protein L16p/L10e CH43_825 PF00831 Ribosomal L29 protein CH43_826 PF00366 Ribosomal protein S17 CH43_827 PF00238 Ribosomal protein L14p/L23e CH43_828 PF00467 KOW motif CH43_828 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH43_829 PF00673 ribosomal L5P family C-terminus CH43_829 PF00281 Ribosomal protein L5 CH43_83 PF00444 Ribosomal protein L36 CH43_830 PF00253 Ribosomal protein S14p/S29e CH43_831 PF00410 Ribosomal protein S8 CH43_832 PF00347 Ribosomal protein L6 CH43_833 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH43_834 PF03719 Ribosomal protein S5, C-terminal domain CH43_834 PF00333 Ribosomal protein S5, N-terminal domain CH43_835 PF00327 Ribosomal protein L30p/L7e CH43_836 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH43_837 PF00344 SecY translocase CH43_838 PF00444 Ribosomal protein L36 CH43_839 PF00416 Ribosomal protein S13/S18 CH43_840 PF00411 Ribosomal protein S11 CH43_841 PF00163 Ribosomal protein S4/S9 N-terminal domain CH43_841 PF01479 S4 domain CH43_842 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH43_842 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH43_842 PF01000 RNA polymerase Rpb3/RpoA insert domain CH43_843 PF01196 Ribosomal protein L17 CH43_844 PF13411 MerR HTH family regulatory protein CH43_845 PF03889 Alternative ribosome-rescue factor A CH43_846 PF01741 Large-conductance mechanosensitive channel, MscL CH43_847 PF02080 TrkA-C domain CH43_847 PF02254 TrkA-N domain CH43_848 PF01189 16S rRNA methyltransferase RsmB/F CH43_848 PF01029 NusB family CH43_849 PF02911 Formyl transferase, C-terminal domain CH43_849 PF00551 Formyl transferase CH43_85 PF10757 Biofilm formation regulator YbaJ CH43_850 PF01327 Polypeptide deformylase CH43_851 PF17782 DprA winged helix domain CH43_851 PF02481 DNA recombination-mediator protein A CH43_852 PF04361 Protein of unknown function (DUF494) CH43_853 PF01396 Topoisomerase DNA binding C4 zinc finger CH43_854 PF01300 Telomere recombination CH43_855 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH43_855 PF08501 Shikimate dehydrogenase substrate binding domain CH43_855 PF01488 Shikimate / quinate 5-dehydrogenase CH43_856 PF00132 Bacterial transferase hexapeptide (six repeats) CH43_86 PF05321 Haemolysin expression modulating protein CH43_862 PF01527 Transposase CH43_863 PF13276 HTH-like domain CH43_863 PF13683 Integrase core domain CH43_864 PF01367 5'-3' exonuclease, C-terminal SAM fold CH43_864 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH43_865 PF01695 IstB-like ATP binding protein CH43_866 PF02796 Helix-turn-helix domain of resolvase CH43_866 PF00665 Integrase core domain CH43_868 PF00474 Sodium:solute symporter family CH43_869 PF04341 Protein of unknown function, DUF485 CH43_87 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH43_870 PF16177 Acetyl-coenzyme A synthetase N-terminus CH43_870 PF00501 AMP-binding enzyme CH43_870 PF13193 AMP-binding enzyme C-terminal domain CH43_871 PF00375 Sodium:dicarboxylate symporter family CH43_872 PF00072 Response regulator receiver domain CH43_872 PF00196 Bacterial regulatory proteins, luxR family CH43_873 PF00072 Response regulator receiver domain CH43_873 PF00672 HAMP domain CH43_873 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH43_873 PF00512 His Kinase A (phospho-acceptor) domain CH43_873 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH43_873 PF01627 Hpt domain CH43_877 PF12833 Helix-turn-helix domain CH43_877 PF14525 AraC-binding-like domain CH43_88 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH43_881 PF01514 Secretory protein of YscJ/FliF family CH43_884 PF00771 FHIPEP family CH43_885 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH43_885 PF18269 T3SS EscN ATPase C-terminal domain CH43_888 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH43_889 PF00813 FliP family CH43_890 PF01313 Bacterial export proteins, family 3 CH43_891 PF01311 Bacterial export proteins, family 1 CH43_892 PF01312 FlhB HrpN YscU SpaS Family CH43_893 PF04143 Sulphur transport CH43_894 PF01206 Sulfurtransferase TusA CH43_895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH43_895 PF03466 LysR substrate binding domain CH43_896 PF03222 Tryptophan/tyrosine permease family CH43_897 PF01053 Cys/Met metabolism PLP-dependent enzyme CH43_898 PF00005 ABC transporter CH43_899 PF01032 FecCD transport family CH43_90 PF00909 Ammonium Transporter Family CH43_900 PF01497 Periplasmic binding protein CH43_901 PF05171 Haemin-degrading HemS.ChuX domain CH43_902 PF00593 TonB dependent receptor CH43_902 PF07715 TonB-dependent Receptor Plug Domain CH43_903 PF10636 Hemin uptake protein hemP CH43_904 PF13460 NAD(P)H-binding CH43_905 PF06228 Haem utilisation ChuX/HutX CH43_906 PF04055 Radical SAM superfamily CH43_91 PF00543 Nitrogen regulatory protein P-II CH43_910 PF15608 PELOTA RNA binding domain CH43_910 PF11202 Phosphoribosyl transferase (PRTase) CH43_914 PF02342 TerD domain CH43_915 PF02342 TerD domain CH43_916 PF05099 Tellurite resistance protein TerB CH43_917 PF03741 Integral membrane protein TerC family CH43_918 PF02342 TerD domain CH43_919 PF02342 TerD domain CH43_92 PF00005 ABC transporter CH43_92 PF00664 ABC transporter transmembrane region CH43_921 PF00577 Outer membrane usher protein CH43_921 PF13954 PapC N-terminal domain CH43_921 PF13953 PapC C-terminal domain CH43_922 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH43_925 PF01565 FAD binding domain CH43_925 PF08031 Berberine and berberine like CH43_928 PF04345 Chorismate lyase CH43_929 PF01040 UbiA prenyltransferase family CH43_93 PF00005 ABC transporter CH43_93 PF00664 ABC transporter transmembrane region CH43_930 PF01553 Acyltransferase CH43_931 PF01219 Prokaryotic diacylglycerol kinase CH43_932 PF00717 Peptidase S24-like CH43_932 PF01726 LexA DNA binding domain CH43_933 PF01475 Ferric uptake regulator family CH43_934 PF01207 Dihydrouridine synthase (Dus) CH43_935 PF09583 Phage shock protein G (Phageshock_PspG) CH43_936 PF08240 Alcohol dehydrogenase GroES-like domain CH43_936 PF00107 Zinc-binding dehydrogenase CH43_937 PF00772 DnaB-like helicase N terminal domain CH43_937 PF03796 DnaB-like helicase C terminal domain CH43_938 PF01168 Alanine racemase, N-terminal domain CH43_938 PF00842 Alanine racemase, C-terminal domain CH43_939 PF00155 Aminotransferase class I and II CH43_94 PF01037 Lrp/AsnC ligand binding domain CH43_94 PF13404 AsnC-type helix-turn-helix domain CH43_940 PF04237 YjbR CH43_941 PF00005 ABC transporter CH43_941 PF17760 UvrA interaction domain CH43_941 PF17755 UvrA DNA-binding domain CH43_942 PF00436 Single-strand binding protein family CH43_943 PF05336 L-rhamnose mutarotase CH43_944 PF00465 Iron-containing alcohol dehydrogenase CH43_945 PF00596 Class II Aldolase and Adducin N-terminal domain CH43_946 PF06134 L-rhamnose isomerase (RhaA) CH43_947 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH43_947 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH43_95 PF00291 Pyridoxal-phosphate dependent enzyme CH43_950 PF02311 AraC-like ligand binding domain CH43_950 PF12833 Helix-turn-helix domain CH43_951 PF12833 Helix-turn-helix domain CH43_951 PF02311 AraC-like ligand binding domain CH43_952 PF06379 L-rhamnose-proton symport protein (RhaT) CH43_959 PF13247 4Fe-4S dicluster domain CH43_959 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH43_959 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH43_960 PF13247 4Fe-4S dicluster domain CH43_960 PF12800 4Fe-4S binding domain CH43_961 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH43_961 PF01568 Molydopterin dinucleotide binding domain CH43_961 PF00384 Molybdopterin oxidoreductase CH43_962 PF11412 Disulphide bond corrector protein DsbC CH43_962 PF02683 Cytochrome C biogenesis protein transmembrane region CH43_963 PF03091 CutA1 divalent ion tolerance protein CH43_964 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH43_965 PF00206 Lyase CH43_965 PF10415 Fumarase C C-terminus CH43_966 PF04186 FxsA cytoplasmic membrane protein CH43_967 PF00166 Chaperonin 10 Kd subunit CH43_968 PF00118 TCP-1/cpn60 chaperonin family CH43_969 PF13698 Domain of unknown function (DUF4156) CH43_97 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH43_97 PF12793 Sugar transport-related sRNA regulator N-term CH43_970 PF04055 Radical SAM superfamily CH43_971 PF09285 Elongation factor P, C-terminal CH43_971 PF01132 Elongation factor P (EF-P) OB domain CH43_971 PF08207 Elongation factor P (EF-P) KOW-like domain CH43_972 PF00893 Small Multidrug Resistance protein CH43_973 PF02313 Fumarate reductase subunit D CH43_974 PF02300 Fumarate reductase subunit C CH43_975 PF13183 4Fe-4S dicluster domain CH43_975 PF13085 2Fe-2S iron-sulfur cluster binding domain CH43_976 PF02910 Fumarate reductase flavoprotein C-term CH43_976 PF00890 FAD binding domain CH43_977 PF00152 tRNA synthetases class II (D, K and N) CH43_978 PF00924 Mechanosensitive ion channel CH43_978 PF12795 Mechanosensitive ion channel porin domain CH43_978 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH43_979 PF02666 Phosphatidylserine decarboxylase CH43_98 PF06508 Queuosine biosynthesis protein QueC CH43_980 PF03193 RsgA GTPase CH43_981 PF00929 Exonuclease CH43_984 PF08331 Domain of unknown function (DUF1730) CH43_985 PF01256 Carbohydrate kinase CH43_985 PF03853 YjeF-related protein N-terminus CH43_986 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH43_987 PF01520 N-acetylmuramoyl-L-alanine amidase CH43_988 PF01119 DNA mismatch repair protein, C-terminal domain CH43_988 PF08676 MutL C terminal dimerisation domain CH43_990 PF17209 Hfq protein CH43_991 PF01926 50S ribosome-binding GTPase CH43_991 PF13167 GTP-binding GTPase N-terminal CH43_991 PF16360 GTP-binding GTPase Middle Region CH43_992 PF12221 Bacterial membrane protein N terminal CH43_992 PF01145 SPFH domain / Band 7 family CH43_993 PF01145 SPFH domain / Band 7 family CH43_994 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CH43_995 PF00709 Adenylosuccinate synthetase CH43_996 PF02082 Transcriptional regulator CH43_997 PF17876 Cold shock domain CH43_997 PF00575 S1 RNA binding domain CH43_997 PF00773 RNB domain CH43_997 PF08206 Ribonuclease B OB domain CH43_997 PF08461 Ribonuclease R winged-helix domain CH43_998 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH43_998 PF00588 SpoU rRNA Methylase family CH43_999 PF02770 Acyl-CoA dehydrogenase, middle domain CH43_999 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH43_999 PF18158 Adaptive response protein AidB N-terminal domain