CH43_1 SM01217 CH43_1 CH43_10 SM00195 Dual specificity phosphatase, catalytic domain CH43_10 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH43_1002 SM00382 ATPases associated with a variety of cellular activities CH43_1004 SM00421 helix_turn_helix, Lux Regulon CH43_1004 SM00448 cheY-homologous receiver domain CH43_1005 SM00387 Histidine kinase-like ATPases CH43_1009 SM00912 haemagglutination activity domain CH43_1015 SM00382 ATPases associated with a variety of cellular activities CH43_1016 SM00382 ATPases associated with a variety of cellular activities CH43_1018 SM00052 Putative diguanylate phosphodiesterase CH43_1018 SM00267 diguanylate cyclase CH43_102 SM01321 CH43_102 CH43_1027 SM00052 Putative diguanylate phosphodiesterase CH43_1031 SM00869 Autotransporter beta-domain CH43_104 SM00411 bacterial (prokaryotic) histone like domain CH43_1042 SM00235 Zinc-dependent metalloprotease CH43_1043 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH43_1046 SM01321 CH43_1046 CH43_1049 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH43_1049 SM00387 Histidine kinase-like ATPases CH43_1049 SM00388 His Kinase A (phosphoacceptor) domain CH43_1049 SM00448 cheY-homologous receiver domain CH43_105 SM00382 ATPases associated with a variety of cellular activities CH43_105 SM00464 Found in ATP-dependent protease La (LON) CH43_1050 SM00382 ATPases associated with a variety of cellular activities CH43_1056 SM00448 cheY-homologous receiver domain CH43_1056 SM00862 Transcriptional regulatory protein, C terminal CH43_106 SM00382 ATPases associated with a variety of cellular activities CH43_106 SM00994 ClpX C4-type zinc finger CH43_106 SM01086 C-terminal, D2-small domain, of ClpB protein CH43_1067 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH43_1072 SM00257 Lysin motif CH43_1072 SM00634 Bacterial Ig-like domain (group 1) CH43_1074 SM00642 Alpha-amylase domain CH43_1075 SM00642 Alpha-amylase domain CH43_1084 SM00316 Ribosomal protein S1-like RNA-binding domain CH43_1084 SM00322 K homology RNA-binding domain CH43_1085 SM00028 Tetratricopeptide repeats CH43_1086 SM00487 DEAD-like helicases superfamily CH43_1086 SM00490 helicase superfamily c-terminal domain CH43_1088 SM00530 Helix-turn-helix XRE-family like proteins CH43_1104 SM00382 ATPases associated with a variety of cellular activities CH43_1107 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH43_1108 SM00849 Metallo-beta-lactamase superfamily CH43_1109 SM00072 Guanylate kinase homologues. CH43_1111 SM00382 ATPases associated with a variety of cellular activities CH43_1112 SM00382 ATPases associated with a variety of cellular activities CH43_1117 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH43_1117 SM00866 CH43_1117 CH43_1121 SM00382 ATPases associated with a variety of cellular activities CH43_1122 SM00382 ATPases associated with a variety of cellular activities CH43_1140 SM00382 ATPases associated with a variety of cellular activities CH43_1142 SM00382 ATPases associated with a variety of cellular activities CH43_1157 SM00342 helix_turn_helix, arabinose operon control protein CH43_1163 SM01133 CH43_1163 CH43_1167 SM00382 ATPases associated with a variety of cellular activities CH43_1177 SM00267 diguanylate cyclase CH43_1184 SM00749 bacterial OsmY and nodulation domain CH43_1189 SM01133 CH43_1189 CH43_1190 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CH43_1195 SM00382 ATPases associated with a variety of cellular activities CH43_1196 SM00530 Helix-turn-helix XRE-family like proteins CH43_1199 SM00382 ATPases associated with a variety of cellular activities CH43_12 SM00563 Phosphate acyltransferases CH43_1201 SM00267 diguanylate cyclase CH43_1203 SM00831 Cation transporter/ATPase, N-terminus CH43_1207 SM00342 helix_turn_helix, arabinose operon control protein CH43_1207 SM00871 Bacterial transcription activator, effector binding domain CH43_1208 SM00855 Phosphoglycerate mutase family CH43_1211 SM00448 cheY-homologous receiver domain CH43_1211 SM00862 Transcriptional regulatory protein, C terminal CH43_1219 SM00852 Probable molybdopterin binding domain CH43_1224 SM00271 DnaJ molecular chaperone homology domain CH43_1228 SM00904 Riboflavin kinase CH43_123 SM00981 CH43_123 CH43_1234 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CH43_1235 SM00851 MGS-like domain CH43_1235 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH43_1243 SM00650 Ribosomal RNA adenine dimethylases CH43_1247 SM00271 DnaJ molecular chaperone homology domain CH43_1257 SM00382 ATPases associated with a variety of cellular activities CH43_1257 SM01086 C-terminal, D2-small domain, of ClpB protein CH43_126 SM00861 Transketolase, pyrimidine binding domain CH43_1268 SM00487 DEAD-like helicases superfamily CH43_1268 SM00490 helicase superfamily c-terminal domain CH43_1269 SM00486 DNA polymerase type-B family CH43_127 SM01321 CH43_127 CH43_1271 SM00382 ATPases associated with a variety of cellular activities CH43_1279 SM01329 CH43_1279 CH43_1280 SM00917 LeuA allosteric (dimerisation) domain CH43_1287 SM01321 CH43_1287 CH43_1288 SM00354 helix_turn _helix lactose operon repressor CH43_1289 SM01321 CH43_1289 CH43_1304 SM00842 Cell division protein FtsA CH43_1305 SM00864 Tubulin/FtsZ family, GTPase domain CH43_1305 SM00865 Tubulin/FtsZ family, C-terminal domain CH43_1309 SM00957 SecA DEAD-like domain CH43_1309 SM00958 SecA preprotein cross-linking domain CH43_1311 SM00382 ATPases associated with a variety of cellular activities CH43_1316 SM01240 CH43_1316 CH43_1321 SM00644 CH43_1321 CH43_1324 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH43_1324 SM00895 CH43_1324 CH43_1328 SM01321 CH43_1328 CH43_1337 SM00947 Carbonic anhydrase CH43_1338 SM00382 ATPases associated with a variety of cellular activities CH43_1351 SM00487 DEAD-like helicases superfamily CH43_1351 SM00490 helicase superfamily c-terminal domain CH43_1351 SM00847 Helicase associated domain (HA2) Add an annotation CH43_1353 SM00382 ATPases associated with a variety of cellular activities CH43_136 SM01321 CH43_136 CH43_1362 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH43_1363 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH43_1364 SM00073 Histidine Phosphotransfer domain CH43_1364 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH43_1364 SM00387 Histidine kinase-like ATPases CH43_1364 SM00388 His Kinase A (phosphoacceptor) domain CH43_1364 SM00448 cheY-homologous receiver domain CH43_1365 SM00954 Region found in RelA / SpoT proteins CH43_1368 SM01192 CH43_1368 CH43_1368 SM01193 CH43_1368 CH43_139 SM01323 CH43_139 CH43_1390 SM00257 Lysin motif CH43_1392 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CH43_1392 SM00534 ATPase domain of DNA mismatch repair MUTS family CH43_1394 SM00829 Enoylreductase CH43_1397 SM01120 CH43_1397 CH43_1400 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH43_1403 SM00062 Bacterial periplasmic substrate-binding proteins CH43_1404 SM01235 CH43_1404 CH43_1415 SM00382 ATPases associated with a variety of cellular activities CH43_1417 SM00420 helix_turn_helix, Deoxyribose operon repressor CH43_1417 SM01134 CH43_1417 CH43_1418 SM01007 Class II Aldolase and Adducin N-terminal domain CH43_1419 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH43_1428 SM00382 ATPases associated with a variety of cellular activities CH43_1431 SM00861 Transketolase, pyrimidine binding domain CH43_1437 SM00382 ATPases associated with a variety of cellular activities CH43_1439 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH43_1448 SM01091 Transporter associated domain CH43_1450 SM00382 ATPases associated with a variety of cellular activities CH43_1450 SM00962 SRP54-type protein, GTPase domain CH43_1450 SM00963 SRP54-type protein, helical bundle domain CH43_1458 SM00448 cheY-homologous receiver domain CH43_1458 SM00850 LytTr DNA-binding domain CH43_1461 SM00382 ATPases associated with a variety of cellular activities CH43_1463 SM00830 Chorismate mutase type II CH43_1464 SM00830 Chorismate mutase type II CH43_1465 SM01321 CH43_1465 CH43_1468 SM00363 S4 RNA-binding domain CH43_147 SM00642 Alpha-amylase domain CH43_1470 SM00382 ATPases associated with a variety of cellular activities CH43_1470 SM01086 C-terminal, D2-small domain, of ClpB protein CH43_1484 SM00346 helix_turn_helix isocitrate lyase regulation CH43_1485 SM01018 B12 binding domain CH43_1496 SM00382 ATPases associated with a variety of cellular activities CH43_151 SM00091 PAS domain CH43_151 SM00387 Histidine kinase-like ATPases CH43_151 SM00388 His Kinase A (phosphoacceptor) domain CH43_1513 SM00382 ATPases associated with a variety of cellular activities CH43_1513 SM01086 C-terminal, D2-small domain, of ClpB protein CH43_152 SM00448 cheY-homologous receiver domain CH43_152 SM00862 Transcriptional regulatory protein, C terminal CH43_1524 SM00860 SMI1 / KNR4 family CH43_1527 SM00530 Helix-turn-helix XRE-family like proteins CH43_1535 SM00342 helix_turn_helix, arabinose operon control protein CH43_1538 SM01133 CH43_1538 CH43_1540 SM00062 Bacterial periplasmic substrate-binding proteins CH43_1543 SM00382 ATPases associated with a variety of cellular activities CH43_1550 SM00382 ATPases associated with a variety of cellular activities CH43_1558 SM01321 CH43_1558 CH43_1559 SM00357 Cold shock protein domain CH43_1560 SM00357 Cold shock protein domain CH43_1562 SM00849 Metallo-beta-lactamase superfamily CH43_1566 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH43_1566 SM00895 CH43_1566 CH43_1574 SM00878 Biotin carboxylase C-terminal domain CH43_1579 SM00829 Enoylreductase CH43_1580 SM00052 Putative diguanylate phosphodiesterase CH43_1580 SM00267 diguanylate cyclase CH43_1585 SM00316 Ribosomal protein S1-like RNA-binding domain CH43_1611 SM00642 Alpha-amylase domain CH43_1613 SM00354 helix_turn _helix lactose operon repressor CH43_1623 SM00382 ATPases associated with a variety of cellular activities CH43_1627 SM00116 Domain in cystathionine beta-synthase and other proteins. CH43_1629 SM00382 ATPases associated with a variety of cellular activities CH43_1636 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH43_1637 SM01321 CH43_1637 CH43_1638 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH43_164 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH43_1648 SM00729 Elongator protein 3, MiaB family, Radical SAM CH43_1649 SM00073 Histidine Phosphotransfer domain CH43_1649 SM00091 PAS domain CH43_1649 SM00387 Histidine kinase-like ATPases CH43_1649 SM00388 His Kinase A (phosphoacceptor) domain CH43_1649 SM00448 cheY-homologous receiver domain CH43_1652 SM00749 bacterial OsmY and nodulation domain CH43_1668 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH43_1668 SM00895 CH43_1668 CH43_1673 SM00858 CH43_1673 CH43_1675 SM01321 CH43_1675 CH43_1680 SM00869 Autotransporter beta-domain CH43_1684 SM00220 Serine/Threonine protein kinases, catalytic domain CH43_1686 SM00327 von Willebrand factor (vWF) type A domain CH43_1687 SM00327 von Willebrand factor (vWF) type A domain CH43_1689 SM00327 von Willebrand factor (vWF) type A domain CH43_169 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CH43_1691 SM00912 haemagglutination activity domain CH43_1696 SM00869 Autotransporter beta-domain CH43_1699 SM00382 ATPases associated with a variety of cellular activities CH43_1701 SM00354 helix_turn _helix lactose operon repressor CH43_1706 SM01217 CH43_1706 CH43_1735 SM00400 zinc finger CH43_1735 SM00493 CH43_1735 CH43_1735 SM00766 DNA primase DnaG DnaB-binding CH43_1738 SM01207 CH43_1738 CH43_1739 SM00905 Dihydroneopterin aldolase CH43_1741 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH43_1742 SM00287 Bacterial SH3 domain homologues CH43_1743 SM01118 CH43_1743 CH43_1759 SM00387 Histidine kinase-like ATPases CH43_1759 SM00433 TopoisomeraseII CH43_1762 SM00434 DNA Topoisomerase IV CH43_1763 SM00563 Phosphate acyltransferases CH43_1769 SM00342 helix_turn_helix, arabinose operon control protein CH43_1788 SM01321 CH43_1788 CH43_179 SM00900 CH43_179 CH43_1803 SM00382 ATPases associated with a variety of cellular activities CH43_1808 SM00382 ATPases associated with a variety of cellular activities CH43_1812 SM00858 CH43_1812 CH43_1826 SM00862 Transcriptional regulatory protein, C terminal CH43_1850 SM01006 Siderophore biosynthesis protein domain CH43_1857 SM00421 helix_turn_helix, Lux Regulon CH43_186 SM01321 CH43_186 CH43_1870 SM00382 ATPases associated with a variety of cellular activities CH43_1870 SM01086 C-terminal, D2-small domain, of ClpB protein CH43_1881 SM00382 ATPases associated with a variety of cellular activities CH43_1887 SM00478 endonuclease III CH43_1887 SM00525 CH43_1887 CH43_189 SM00710 Parallel beta-helix repeats CH43_189 SM00912 haemagglutination activity domain CH43_1894 SM00729 Elongator protein 3, MiaB family, Radical SAM CH43_1896 SM01152 CH43_1896 CH43_1900 SM00382 ATPases associated with a variety of cellular activities CH43_1903 SM00732 Likely ribonuclease with RNase H fold. CH43_1908 SM00731 SprT homologues. CH43_1914 SM00861 Transketolase, pyrimidine binding domain CH43_1915 SM01321 CH43_1915 CH43_1916 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH43_1925 SM01321 CH43_1925 CH43_1929 SM01011 Aminopeptidase P, N-terminal domain CH43_1943 SM00448 cheY-homologous receiver domain CH43_1943 SM00862 Transcriptional regulatory protein, C terminal CH43_1944 SM00387 Histidine kinase-like ATPases CH43_1944 SM00388 His Kinase A (phosphoacceptor) domain CH43_195 SM01007 Class II Aldolase and Adducin N-terminal domain CH43_1950 SM00937 CH43_1950 CH43_1956 SM00530 Helix-turn-helix XRE-family like proteins CH43_1958 SM00530 Helix-turn-helix XRE-family like proteins CH43_1959 SM00778 Zinc-binding domain of primase-helicase CH43_1959 SM00885 D5 N terminal like CH43_1980 SM00382 ATPases associated with a variety of cellular activities CH43_1981 SM00382 ATPases associated with a variety of cellular activities CH43_1990 SM00354 helix_turn _helix lactose operon repressor CH43_1993 SM00354 helix_turn _helix lactose operon repressor CH43_2009 SM00420 helix_turn_helix, Deoxyribose operon repressor CH43_2009 SM01134 CH43_2009 CH43_201 SM00382 ATPases associated with a variety of cellular activities CH43_2013 SM00382 ATPases associated with a variety of cellular activities CH43_2015 SM00869 Autotransporter beta-domain CH43_2018 SM00947 Carbonic anhydrase CH43_2022 SM00382 ATPases associated with a variety of cellular activities CH43_203 SM00382 ATPases associated with a variety of cellular activities CH43_2034 SM00862 Transcriptional regulatory protein, C terminal CH43_2040 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH43_2040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH43_2040 SM00319 Homologues of the ligand binding domain of Tar CH43_2041 SM00849 Metallo-beta-lactamase superfamily CH43_2045 SM00354 helix_turn _helix lactose operon repressor CH43_2048 SM00563 Phosphate acyltransferases CH43_2053 SM00927 DNA mismatch repair enzyme MutH CH43_2055 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH43_206 SM00062 Bacterial periplasmic substrate-binding proteins CH43_2068 SM00382 ATPases associated with a variety of cellular activities CH43_2071 SM00646 CH43_2071 CH43_2075 SM00925 MltA specific insert domain CH43_2083 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH43_2083 SM00475 5'-3' exonuclease CH43_2087 SM01321 CH43_2087 CH43_2093 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH43_2102 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH43_2104 SM00935 Outer membrane protein (OmpH-like) CH43_2110 SM00481 DNA polymerase alpha chain like domain CH43_2113 SM00977 TilS substrate C-terminal domain CH43_2117 SM01322 CH43_2117 CH43_2125 SM00382 ATPases associated with a variety of cellular activities CH43_2125 SM00930 CH43_2125 CH43_2135 SM00257 Lysin motif CH43_2136 SM00849 Metallo-beta-lactamase superfamily CH43_2139 SM00479 CH43_2139 CH43_214 SM00347 helix_turn_helix multiple antibiotic resistance protein CH43_2145 SM00382 ATPases associated with a variety of cellular activities CH43_2154 SM00357 Cold shock protein domain CH43_2158 SM00382 ATPases associated with a variety of cellular activities CH43_2159 SM00382 ATPases associated with a variety of cellular activities CH43_2164 SM00988 UreE urease accessory protein, N-terminal domain CH43_217 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH43_2177 SM00342 helix_turn_helix, arabinose operon control protein CH43_2186 SM00448 cheY-homologous receiver domain CH43_2186 SM00862 Transcriptional regulatory protein, C terminal CH43_219 SM01144 CH43_219 CH43_2198 SM00796 Allophanate hydrolase subunit 1 CH43_2199 SM00797 Allophanate hydrolase subunit 2 CH43_22 SM01321 CH43_22 CH43_220 SM00881 CoA binding domain CH43_2204 SM00986 Uracil DNA glycosylase superfamily CH43_2204 SM00987 UreE urease accessory protein, C-terminal domain CH43_2208 SM00248 ankyrin repeats CH43_221 SM00155 Phospholipase D. Active site motifs. CH43_2210 SM00487 DEAD-like helicases superfamily CH43_2210 SM00490 helicase superfamily c-terminal domain CH43_2220 SM00358 Double-stranded RNA binding motif CH43_2220 SM00535 Ribonuclease III family CH43_2225 SM01321 CH43_2225 CH43_2226 SM00825 Beta-ketoacyl synthase CH43_2227 SM00382 ATPases associated with a variety of cellular activities CH43_2241 SM00851 MGS-like domain CH43_2243 SM00881 CoA binding domain CH43_2244 SM00992 Hemimethylated DNA-binding protein YccV like CH43_2245 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH43_2257 SM00825 Beta-ketoacyl synthase CH43_2265 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH43_2273 SM00382 ATPases associated with a variety of cellular activities CH43_2273 SM01086 C-terminal, D2-small domain, of ClpB protein CH43_2292 SM00382 ATPases associated with a variety of cellular activities CH43_2295 SM00852 Probable molybdopterin binding domain CH43_2297 SM00382 ATPases associated with a variety of cellular activities CH43_2302 SM00829 Enoylreductase CH43_2308 SM00382 ATPases associated with a variety of cellular activities CH43_2310 SM00382 ATPases associated with a variety of cellular activities CH43_2315 SM00919 Malic enzyme, NAD binding domain CH43_2315 SM01274 CH43_2315 CH43_2323 SM01321 CH43_2323 CH43_2329 SM01091 Transporter associated domain CH43_2333 SM01006 Siderophore biosynthesis protein domain CH43_2335 SM00382 ATPases associated with a variety of cellular activities CH43_2343 SM01350 CH43_2343 CH43_2355 SM00382 ATPases associated with a variety of cellular activities CH43_2356 SM00382 ATPases associated with a variety of cellular activities CH43_2363 SM00634 Bacterial Ig-like domain (group 1) CH43_2369 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH43_2379 SM00421 helix_turn_helix, Lux Regulon CH43_2379 SM00448 cheY-homologous receiver domain CH43_2388 SM00354 helix_turn _helix lactose operon repressor CH43_239 SM00382 ATPases associated with a variety of cellular activities CH43_2392 SM00090 RIO-like kinase CH43_2393 SM01321 CH43_2393 CH43_2394 SM00382 ATPases associated with a variety of cellular activities CH43_2396 SM00342 helix_turn_helix, arabinose operon control protein CH43_24 SM00840 CH43_24 CH43_2406 SM00357 Cold shock protein domain CH43_2410 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH43_2410 SM00091 PAS domain CH43_2410 SM00267 diguanylate cyclase CH43_2418 SM00347 helix_turn_helix multiple antibiotic resistance protein CH43_2428 SM00903 Flavin reductase like domain CH43_2434 SM00487 DEAD-like helicases superfamily CH43_2434 SM00490 helicase superfamily c-terminal domain CH43_2436 SM01022 CH43_2436 CH43_245 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH43_2451 SM01321 CH43_2451 CH43_2452 SM00634 Bacterial Ig-like domain (group 1) CH43_2455 SM00858 CH43_2455 CH43_2464 SM00047 Lysozyme subfamily 2 CH43_2468 SM01007 Class II Aldolase and Adducin N-terminal domain CH43_2471 SM00382 ATPases associated with a variety of cellular activities CH43_2485 SM00382 ATPases associated with a variety of cellular activities CH43_2492 SM00478 endonuclease III CH43_2493 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH43_2494 SM00342 helix_turn_helix, arabinose operon control protein CH43_250 SM01387 CH43_250 CH43_2505 SM00382 ATPases associated with a variety of cellular activities CH43_2522 SM00421 helix_turn_helix, Lux Regulon CH43_2522 SM00448 cheY-homologous receiver domain CH43_2523 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH43_2523 SM00465 GIY-YIG type nucleases (URI domain) CH43_254 SM00316 Ribosomal protein S1-like RNA-binding domain CH43_254 SM00322 K homology RNA-binding domain CH43_2552 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH43_2552 SM00866 CH43_2552 CH43_2557 SM00382 ATPases associated with a variety of cellular activities CH43_2561 SM00382 ATPases associated with a variety of cellular activities CH43_2573 SM00822 CH43_2573 CH43_2573 SM00823 Phosphopantetheine attachment site CH43_2573 SM00824 Thioesterase CH43_2573 SM00825 Beta-ketoacyl synthase CH43_2573 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH43_2574 SM00823 Phosphopantetheine attachment site CH43_2575 SM00342 helix_turn_helix, arabinose operon control protein CH43_2576 SM00382 ATPases associated with a variety of cellular activities CH43_2577 SM00382 ATPases associated with a variety of cellular activities CH43_2589 SM00062 Bacterial periplasmic substrate-binding proteins CH43_2589 SM00387 Histidine kinase-like ATPases CH43_2589 SM00388 His Kinase A (phosphoacceptor) domain CH43_2589 SM00448 cheY-homologous receiver domain CH43_2590 SM00421 helix_turn_helix, Lux Regulon CH43_2590 SM00448 cheY-homologous receiver domain CH43_2604 SM00420 helix_turn_helix, Deoxyribose operon repressor CH43_2604 SM01134 CH43_2604 CH43_261 SM00382 ATPases associated with a variety of cellular activities CH43_2613 SM00382 ATPases associated with a variety of cellular activities CH43_2627 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH43_2627 SM00387 Histidine kinase-like ATPases CH43_263 SM01103 CH43_263 CH43_2644 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH43_2644 SM00866 CH43_2644 CH43_266 SM00448 cheY-homologous receiver domain CH43_266 SM00862 Transcriptional regulatory protein, C terminal CH43_2660 SM00671 Sel1-like repeats. CH43_2662 SM00671 Sel1-like repeats. CH43_267 SM00387 Histidine kinase-like ATPases CH43_267 SM00388 His Kinase A (phosphoacceptor) domain CH43_2673 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH43_2673 SM00387 Histidine kinase-like ATPases CH43_2673 SM00388 His Kinase A (phosphoacceptor) domain CH43_2674 SM00862 Transcriptional regulatory protein, C terminal CH43_2675 SM00382 ATPases associated with a variety of cellular activities CH43_2677 SM00448 cheY-homologous receiver domain CH43_2684 SM00450 Rhodanese Homology Domain CH43_2690 SM01400 CH43_2690 CH43_2694 SM00937 CH43_2694 CH43_27 SM01001 AIR carboxylase CH43_2706 SM01321 CH43_2706 CH43_2711 SM00481 DNA polymerase alpha chain like domain CH43_2719 SM00912 haemagglutination activity domain CH43_2720 SM00836 DALR anticodon binding domain CH43_2720 SM01016 Arginyl tRNA synthetase N terminal dom CH43_2731 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH43_2732 SM00382 ATPases associated with a variety of cellular activities CH43_2734 SM00382 ATPases associated with a variety of cellular activities CH43_2736 SM00257 Lysin motif CH43_2746 SM00487 DEAD-like helicases superfamily CH43_2746 SM00491 CH43_2746 CH43_2750 SM00341 Helicase and RNase D C-terminal CH43_2750 SM00474 3'-5' exonuclease CH43_2760 SM00382 ATPases associated with a variety of cellular activities CH43_2766 SM01040 BRO family, N-terminal domain CH43_2781 SM00635 Bacterial Ig-like domain 2 CH43_2787 SM00635 Bacterial Ig-like domain 2 CH43_2792 SM01321 CH43_2792 CH43_2793 SM01321 CH43_2793 CH43_2795 SM00232 JAB/MPN domain CH43_2800 SM01040 BRO family, N-terminal domain CH43_2806 SM00060 Fibronectin type 3 domain CH43_2816 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH43_2824 SM00763 PrkA AAA domain CH43_2827 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH43_2831 SM00870 CH43_2831 CH43_2835 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH43_2835 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH43_2835 SM00493 CH43_2835 CH43_2846 SM00448 cheY-homologous receiver domain CH43_2847 SM00984 UDP binding domain CH43_2849 SM00528 Domain in histone-like proteins of HNS family CH43_285 SM00116 Domain in cystathionine beta-synthase and other proteins. CH43_285 SM01091 Transporter associated domain CH43_2856 SM00382 ATPases associated with a variety of cellular activities CH43_2857 SM00382 ATPases associated with a variety of cellular activities CH43_2860 SM00155 Phospholipase D. Active site motifs. CH43_2874 SM00749 bacterial OsmY and nodulation domain CH43_2881 SM00481 DNA polymerase alpha chain like domain CH43_2883 SM00363 S4 RNA-binding domain CH43_2885 SM00822 CH43_2885 CH43_2889 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH43_2889 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH43_2889 SM00493 CH43_2889 CH43_2890 SM01321 CH43_2890 CH43_2895 SM00014 Acid phosphatase homologues CH43_2897 SM00028 Tetratricopeptide repeats CH43_2899 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CH43_2902 SM01007 Class II Aldolase and Adducin N-terminal domain CH43_2907 SM00357 Cold shock protein domain CH43_2907 SM00955 CH43_2907 CH43_2910 SM00478 endonuclease III CH43_2910 SM00525 CH43_2910 CH43_2912 SM00900 CH43_2912 CH43_2914 SM00342 helix_turn_helix, arabinose operon control protein CH43_2923 SM00382 ATPases associated with a variety of cellular activities CH43_2928 SM00382 ATPases associated with a variety of cellular activities CH43_2931 SM00342 helix_turn_helix, arabinose operon control protein CH43_294 SM01321 CH43_294 CH43_2946 SM00354 helix_turn _helix lactose operon repressor CH43_2951 SM00382 ATPases associated with a variety of cellular activities CH43_2962 SM00098 Alkaline phosphatase homologues CH43_2964 SM00100 Cyclic nucleotide-monophosphate binding domain CH43_2964 SM00419 helix_turn_helix, cAMP Regulatory protein CH43_2967 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CH43_2967 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CH43_2971 SM00448 cheY-homologous receiver domain CH43_2971 SM00862 Transcriptional regulatory protein, C terminal CH43_2972 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH43_2972 SM00387 Histidine kinase-like ATPases CH43_2972 SM00388 His Kinase A (phosphoacceptor) domain CH43_2974 SM01321 CH43_2974 CH43_2977 SM00867 YceI-like domain CH43_2980 SM00020 Trypsin-like serine protease CH43_2981 SM00530 Helix-turn-helix XRE-family like proteins CH43_2983 SM00382 ATPases associated with a variety of cellular activities CH43_2983 SM00487 DEAD-like helicases superfamily CH43_2983 SM00490 helicase superfamily c-terminal domain CH43_2983 SM00847 Helicase associated domain (HA2) Add an annotation CH43_2995 SM00890 Domain of unknown function CH43_2999 SM00422 helix_turn_helix, mercury resistance CH43_30 SM00382 ATPases associated with a variety of cellular activities CH43_300 SM00382 ATPases associated with a variety of cellular activities CH43_3003 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH43_3006 SM00382 ATPases associated with a variety of cellular activities CH43_3007 SM01321 CH43_3007 CH43_3008 SM00091 PAS domain CH43_3008 SM00382 ATPases associated with a variety of cellular activities CH43_3010 SM00953 CH43_3010 CH43_3017 SM00382 ATPases associated with a variety of cellular activities CH43_3018 SM01321 CH43_3018 CH43_3022 SM00382 ATPases associated with a variety of cellular activities CH43_3023 SM00382 ATPases associated with a variety of cellular activities CH43_3031 SM00363 S4 RNA-binding domain CH43_3036 SM00347 helix_turn_helix multiple antibiotic resistance protein CH43_3044 SM00479 CH43_3044 CH43_3050 SM00354 helix_turn _helix lactose operon repressor CH43_3060 SM01321 CH43_3060 CH43_3063 SM00382 ATPases associated with a variety of cellular activities CH43_3068 SM00382 ATPases associated with a variety of cellular activities CH43_3087 SM00382 ATPases associated with a variety of cellular activities CH43_3091 SM00411 bacterial (prokaryotic) histone like domain CH43_3092 SM00873 B3/4 domain CH43_3092 SM00874 tRNA synthetase B5 domain CH43_3092 SM00896 Ferredoxin-fold anticodon binding domain CH43_3097 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH43_3103 SM00382 ATPases associated with a variety of cellular activities CH43_3116 SM00382 ATPases associated with a variety of cellular activities CH43_3121 SM00644 CH43_3121 CH43_3122 SM00346 helix_turn_helix isocitrate lyase regulation CH43_3132 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH43_3132 SM00245 tail specific protease CH43_3133 SM00945 ProQ/FINO family CH43_3137 SM00972 Spore Coat Protein U domain CH43_3138 SM00972 Spore Coat Protein U domain CH43_3139 SM00972 Spore Coat Protein U domain CH43_3142 SM00972 Spore Coat Protein U domain CH43_3144 SM01022 CH43_3144 CH43_3153 SM01005 Alanine racemase, C-terminal domain CH43_3158 SM00644 CH43_3158 CH43_3160 SM00448 cheY-homologous receiver domain CH43_3161 SM00448 cheY-homologous receiver domain CH43_3162 SM00138 Methyltransferase, chemotaxis proteins CH43_3163 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH43_3163 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH43_3163 SM00319 Homologues of the ligand binding domain of Tar CH43_3164 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH43_3164 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH43_3164 SM00319 Homologues of the ligand binding domain of Tar CH43_3167 SM00869 Autotransporter beta-domain CH43_3172 SM00260 Two component signalling adaptor domain CH43_3173 SM00073 Histidine Phosphotransfer domain CH43_3173 SM00260 Two component signalling adaptor domain CH43_3173 SM00387 Histidine kinase-like ATPases CH43_3173 SM01231 CH43_3173 CH43_3178 SM00831 Cation transporter/ATPase, N-terminus CH43_3180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH43_3180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH43_3180 SM00319 Homologues of the ligand binding domain of Tar CH43_3183 SM00357 Cold shock protein domain CH43_3184 SM01038 Beta galactosidase small chain CH43_3185 SM00829 Enoylreductase CH43_3187 SM00344 helix_turn_helix ASNC type CH43_319 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH43_319 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH43_3194 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH43_3194 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH43_3196 SM00354 helix_turn _helix lactose operon repressor CH43_3197 SM01329 CH43_3197 CH43_32 SM00822 CH43_32 CH43_320 SM01004 Delta-aminolevulinic acid dehydratase CH43_3204 SM00448 cheY-homologous receiver domain CH43_3204 SM00862 Transcriptional regulatory protein, C terminal CH43_3205 SM00387 Histidine kinase-like ATPases CH43_3205 SM00388 His Kinase A (phosphoacceptor) domain CH43_3206 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH43_3211 SM00382 ATPases associated with a variety of cellular activities CH43_3213 SM00487 DEAD-like helicases superfamily CH43_3213 SM00490 helicase superfamily c-terminal domain CH43_3213 SM00982 CH43_3213 CH43_3213 SM01058 CarD-like/TRCF domain CH43_3226 SM01321 CH43_3226 CH43_3233 SM01321 CH43_3233 CH43_3234 SM00825 Beta-ketoacyl synthase CH43_3236 SM00822 CH43_3236 CH43_3237 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH43_3243 SM00363 S4 RNA-binding domain CH43_3244 SM00316 Ribosomal protein S1-like RNA-binding domain CH43_3251 SM00421 helix_turn_helix, Lux Regulon CH43_3253 SM00450 Rhodanese Homology Domain CH43_3256 SM00421 helix_turn_helix, Lux Regulon CH43_3277 SM00354 helix_turn _helix lactose operon repressor CH43_3279 SM00382 ATPases associated with a variety of cellular activities CH43_3289 SM00912 haemagglutination activity domain CH43_3294 SM01329 CH43_3294 CH43_3296 SM00354 helix_turn _helix lactose operon repressor CH43_3301 SM00829 Enoylreductase CH43_3311 SM00062 Bacterial periplasmic substrate-binding proteins CH43_3311 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH43_3313 SM00382 ATPases associated with a variety of cellular activities CH43_3314 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH43_3314 SM00091 PAS domain CH43_3314 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH43_3319 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH43_3331 SM00354 helix_turn _helix lactose operon repressor CH43_3344 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH43_3344 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH43_3345 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH43_3352 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH43_3359 SM00354 helix_turn _helix lactose operon repressor CH43_3366 SM00052 Putative diguanylate phosphodiesterase CH43_3368 SM00382 ATPases associated with a variety of cellular activities CH43_3371 SM00062 Bacterial periplasmic substrate-binding proteins CH43_3380 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH43_3382 SM00342 helix_turn_helix, arabinose operon control protein CH43_3387 SM00825 Beta-ketoacyl synthase CH43_339 SM00382 ATPases associated with a variety of cellular activities CH43_3395 SM00463 Small MutS-related domain CH43_3396 SM00855 Phosphoglycerate mutase family CH43_34 SM00244 prohibitin homologues CH43_3410 SM00382 ATPases associated with a variety of cellular activities CH43_3425 SM00382 ATPases associated with a variety of cellular activities CH43_3439 SM00382 ATPases associated with a variety of cellular activities CH43_3439 SM01086 C-terminal, D2-small domain, of ClpB protein CH43_3448 SM00421 helix_turn_helix, Lux Regulon CH43_3452 SM00382 ATPases associated with a variety of cellular activities CH43_3456 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH43_3481 SM01321 CH43_3481 CH43_3485 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH43_3485 SM00292 breast cancer carboxy-terminal domain CH43_3485 SM00532 Ligase N family CH43_3486 SM00771 ZipA, C-terminal domain (FtsZ-binding) CH43_3493 SM01321 CH43_3493 CH43_3495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH43_3495 SM00387 Histidine kinase-like ATPases CH43_3495 SM00388 His Kinase A (phosphoacceptor) domain CH43_3496 SM00448 cheY-homologous receiver domain CH43_3496 SM00862 Transcriptional regulatory protein, C terminal CH43_3498 SM00382 ATPases associated with a variety of cellular activities CH43_3499 SM00450 Rhodanese Homology Domain CH43_350 SM00382 ATPases associated with a variety of cellular activities CH43_3505 SM00327 von Willebrand factor (vWF) type A domain CH43_3506 SM00387 Histidine kinase-like ATPases CH43_3506 SM00388 His Kinase A (phosphoacceptor) domain CH43_3507 SM00448 cheY-homologous receiver domain CH43_3507 SM00862 Transcriptional regulatory protein, C terminal CH43_351 SM00382 ATPases associated with a variety of cellular activities CH43_3510 SM00382 ATPases associated with a variety of cellular activities CH43_3518 SM00364 Leucine-rich repeats, bacterial type CH43_3518 SM00369 Leucine-rich repeats, typical (most populated) subfamily CH43_3520 SM01130 CH43_3520 CH43_3525 SM00869 Autotransporter beta-domain CH43_3531 SM00919 Malic enzyme, NAD binding domain CH43_3531 SM01274 CH43_3531 CH43_3535 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH43_3538 SM00421 helix_turn_helix, Lux Regulon CH43_3538 SM00448 cheY-homologous receiver domain CH43_3545 SM00382 ATPases associated with a variety of cellular activities CH43_3557 SM01321 CH43_3557 CH43_3559 SM01130 CH43_3559 CH43_356 SM01321 CH43_356 CH43_3568 SM01321 CH43_3568 CH43_3575 SM00382 ATPases associated with a variety of cellular activities CH43_3580 SM00924 MgtE intracellular N domain CH43_3586 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH43_3587 SM00382 ATPases associated with a variety of cellular activities CH43_359 SM00382 ATPases associated with a variety of cellular activities CH43_3593 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH43_3593 SM00387 Histidine kinase-like ATPases CH43_3593 SM00388 His Kinase A (phosphoacceptor) domain CH43_3594 SM00448 cheY-homologous receiver domain CH43_3594 SM00862 Transcriptional regulatory protein, C terminal CH43_3597 SM00046 Diacylglycerol kinase catalytic domain (presumed) CH43_36 SM00422 helix_turn_helix, mercury resistance CH43_360 SM00382 ATPases associated with a variety of cellular activities CH43_360 SM00962 SRP54-type protein, GTPase domain CH43_360 SM00963 SRP54-type protein, helical bundle domain CH43_3610 SM01321 CH43_3610 CH43_3612 SM00116 Domain in cystathionine beta-synthase and other proteins. CH43_3612 SM01240 CH43_3612 CH43_3617 SM00564 beta-propeller repeat CH43_3621 SM00530 Helix-turn-helix XRE-family like proteins CH43_3622 SM00028 Tetratricopeptide repeats CH43_3624 SM00562 CH43_3624 CH43_3625 SM00247 Beta/gamma crystallins CH43_3626 SM00869 Autotransporter beta-domain CH43_3634 SM00271 DnaJ molecular chaperone homology domain CH43_3649 SM00382 ATPases associated with a variety of cellular activities CH43_3651 SM00938 Nitrogen regulatory protein P-II CH43_3653 SM00382 ATPases associated with a variety of cellular activities CH43_3653 SM00448 cheY-homologous receiver domain CH43_3655 SM00387 Histidine kinase-like ATPases CH43_3655 SM00388 His Kinase A (phosphoacceptor) domain CH43_3656 SM01321 CH43_3656 CH43_3660 SM01211 CH43_3660 CH43_3661 SM00062 Bacterial periplasmic substrate-binding proteins CH43_3667 SM01321 CH43_3667 CH43_3671 SM00382 ATPases associated with a variety of cellular activities CH43_3672 SM00981 CH43_3672 CH43_3681 SM00849 Metallo-beta-lactamase superfamily CH43_3684 SM01321 CH43_3684 CH43_3692 SM00357 Cold shock protein domain CH43_3693 SM01150 CH43_3693 CH43_3695 SM00382 ATPases associated with a variety of cellular activities CH43_3696 SM00849 Metallo-beta-lactamase superfamily CH43_3697 SM00411 bacterial (prokaryotic) histone like domain CH43_3699 SM00316 Ribosomal protein S1-like RNA-binding domain CH43_3705 SM00870 CH43_3705 CH43_3713 SM00382 ATPases associated with a variety of cellular activities CH43_3716 SM00843 CH43_3716 CH43_3717 SM00344 helix_turn_helix ASNC type CH43_3719 SM00382 ATPases associated with a variety of cellular activities CH43_3720 SM00382 ATPases associated with a variety of cellular activities CH43_3722 SM00316 Ribosomal protein S1-like RNA-binding domain CH43_3723 SM01321 CH43_3723 CH43_3724 SM00382 ATPases associated with a variety of cellular activities CH43_3724 SM01086 C-terminal, D2-small domain, of ClpB protein CH43_3726 SM00357 Cold shock protein domain CH43_3727 SM00382 ATPases associated with a variety of cellular activities CH43_3739 SM00830 Chorismate mutase type II CH43_3740 SM00382 ATPases associated with a variety of cellular activities CH43_3741 SM00062 Bacterial periplasmic substrate-binding proteins CH43_3741 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH43_3747 SM00382 ATPases associated with a variety of cellular activities CH43_3751 SM00244 prohibitin homologues CH43_3757 SM00382 ATPases associated with a variety of cellular activities CH43_3764 SM00014 Acid phosphatase homologues CH43_3765 SM01133 CH43_3765 CH43_3766 SM00420 helix_turn_helix, Deoxyribose operon repressor CH43_3766 SM01134 CH43_3766 CH43_3768 SM00936 Penicillin-binding protein 5, C-terminal domain CH43_3770 SM00382 ATPases associated with a variety of cellular activities CH43_3770 SM00930 CH43_3770 CH43_3776 SM00382 ATPases associated with a variety of cellular activities CH43_3779 SM01321 CH43_3779 CH43_3784 SM00518 AP endonuclease family 2 CH43_3789 SM00862 Transcriptional regulatory protein, C terminal CH43_379 SM00341 Helicase and RNase D C-terminal CH43_379 SM00487 DEAD-like helicases superfamily CH43_379 SM00490 helicase superfamily c-terminal domain CH43_379 SM00956 CH43_379 CH43_3795 SM00382 ATPases associated with a variety of cellular activities CH43_3805 SM00841 Elongation factor P, C-terminal CH43_3805 SM01185 CH43_3805 CH43_3808 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH43_3808 SM00895 CH43_3808 CH43_3810 SM00833 Cobalamin synthesis protein cobW C-terminal domain CH43_3811 SM00014 Acid phosphatase homologues CH43_3814 SM00052 Putative diguanylate phosphodiesterase CH43_3818 SM00382 ATPases associated with a variety of cellular activities CH43_3821 SM00363 S4 RNA-binding domain CH43_3822 SM00487 DEAD-like helicases superfamily CH43_3822 SM00490 helicase superfamily c-terminal domain CH43_3824 SM01321 CH43_3824 CH43_3854 SM00420 helix_turn_helix, Deoxyribose operon repressor CH43_3854 SM01134 CH43_3854 CH43_3855 SM01007 Class II Aldolase and Adducin N-terminal domain CH43_3858 SM00530 Helix-turn-helix XRE-family like proteins CH43_3862 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH43_3862 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH43_3874 SM00421 helix_turn_helix, Lux Regulon CH43_3874 SM00448 cheY-homologous receiver domain CH43_3875 SM00387 Histidine kinase-like ATPases CH43_3875 SM00388 His Kinase A (phosphoacceptor) domain CH43_3875 SM00448 cheY-homologous receiver domain CH43_3876 SM00434 DNA Topoisomerase IV CH43_3882 SM00852 Probable molybdopterin binding domain CH43_3885 SM01060 CH43_3885 CH43_3886 SM00487 DEAD-like helicases superfamily CH43_3886 SM00488 CH43_3886 CH43_3886 SM00491 CH43_3886 CH43_3895 SM00382 ATPases associated with a variety of cellular activities CH43_3898 SM00450 Rhodanese Homology Domain CH43_3901 SM00382 ATPases associated with a variety of cellular activities CH43_3910 SM00382 ATPases associated with a variety of cellular activities CH43_3913 SM00507 HNH nucleases CH43_3914 SM01118 CH43_3914 CH43_3920 SM01321 CH43_3920 CH43_3929 SM01321 CH43_3929 CH43_393 SM01219 CH43_393 CH43_3934 SM00729 Elongator protein 3, MiaB family, Radical SAM CH43_3938 SM00487 DEAD-like helicases superfamily CH43_3938 SM00490 helicase superfamily c-terminal domain CH43_3939 SM00382 ATPases associated with a variety of cellular activities CH43_3943 SM00729 Elongator protein 3, MiaB family, Radical SAM CH43_3943 SM00876 Biotin and Thiamin Synthesis associated domain CH43_3947 SM00382 ATPases associated with a variety of cellular activities CH43_3952 SM00382 ATPases associated with a variety of cellular activities CH43_3962 SM00855 Phosphoglycerate mutase family CH43_3983 SM01321 CH43_3983 CH43_3984 SM00881 CoA binding domain CH43_3987 SM00861 Transketolase, pyrimidine binding domain CH43_399 SM01321 CH43_399 CH43_4000 SM01321 CH43_4000 CH43_4007 SM00778 Zinc-binding domain of primase-helicase CH43_4014 SM00382 ATPases associated with a variety of cellular activities CH43_4024 SM01081 Putative carbohydrate binding domain CH43_4040 SM00729 Elongator protein 3, MiaB family, Radical SAM CH43_4043 SM00116 Domain in cystathionine beta-synthase and other proteins. CH43_4043 SM01091 Transporter associated domain CH43_4045 SM00062 Bacterial periplasmic substrate-binding proteins CH43_4048 SM00382 ATPases associated with a variety of cellular activities CH43_4059 SM00936 Penicillin-binding protein 5, C-terminal domain CH43_4062 SM00729 Elongator protein 3, MiaB family, Radical SAM CH43_4065 SM00357 Cold shock protein domain CH43_4067 SM00421 helix_turn_helix, Lux Regulon CH43_4072 SM00382 ATPases associated with a variety of cellular activities CH43_4079 SM00382 ATPases associated with a variety of cellular activities CH43_4089 SM01359 CH43_4089 CH43_4089 SM01360 CH43_4089 CH43_4099 SM00869 Autotransporter beta-domain CH43_4107 SM00857 Resolvase, N terminal domain CH43_4111 SM00470 ParB-like nuclease domain CH43_4112 SM00382 ATPases associated with a variety of cellular activities CH43_4120 SM00470 ParB-like nuclease domain CH43_4122 SM00382 ATPases associated with a variety of cellular activities CH43_4128 SM00232 JAB/MPN domain CH43_4134 SM00635 Bacterial Ig-like domain 2 CH43_414 SM00984 UDP binding domain CH43_4140 SM00635 Bacterial Ig-like domain 2 CH43_4149 SM00382 ATPases associated with a variety of cellular activities CH43_4150 SM00470 ParB-like nuclease domain CH43_4151 SM00470 ParB-like nuclease domain CH43_4152 SM00487 DEAD-like helicases superfamily CH43_4152 SM00490 helicase superfamily c-terminal domain CH43_4159 SM01321 CH43_4159 CH43_4163 SM01321 CH43_4163 CH43_4172 SM00062 Bacterial periplasmic substrate-binding proteins CH43_418 SM00357 Cold shock protein domain CH43_418 SM00382 ATPases associated with a variety of cellular activities CH43_418 SM00959 Rho termination factor, N-terminal domain CH43_4180 SM00244 prohibitin homologues CH43_4184 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH43_4184 SM00475 5'-3' exonuclease CH43_4190 SM00481 DNA polymerase alpha chain like domain CH43_4199 SM00342 helix_turn_helix, arabinose operon control protein CH43_420 SM00487 DEAD-like helicases superfamily CH43_420 SM00490 helicase superfamily c-terminal domain CH43_4236 SM00945 ProQ/FINO family CH43_4242 SM00155 Phospholipase D. Active site motifs. CH43_4249 SM00364 Leucine-rich repeats, bacterial type CH43_4264 SM00382 ATPases associated with a variety of cellular activities CH43_4273 SM00342 helix_turn_helix, arabinose operon control protein CH43_4289 SM00382 ATPases associated with a variety of cellular activities CH43_4291 SM00194 Protein tyrosine phosphatase, catalytic domain CH43_4291 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH43_4294 SM00220 Serine/Threonine protein kinases, catalytic domain CH43_431 SM00507 HNH nucleases CH43_4312 SM00857 Resolvase, N terminal domain CH43_4326 SM00470 ParB-like nuclease domain CH43_446 SM00382 ATPases associated with a variety of cellular activities CH43_451 SM00382 ATPases associated with a variety of cellular activities CH43_461 SM00798 AICARFT/IMPCHase bienzyme CH43_461 SM00851 MGS-like domain CH43_462 SM01209 CH43_462 CH43_462 SM01210 CH43_462 CH43_464 SM00411 bacterial (prokaryotic) histone like domain CH43_479 SM00663 RNA polymerase I subunit A N-terminus CH43_485 SM00649 Ribosomal protein L11/L12 CH43_486 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH43_486 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH43_508 SM00382 ATPases associated with a variety of cellular activities CH43_510 SM00530 Helix-turn-helix XRE-family like proteins CH43_517 SM00342 helix_turn_helix, arabinose operon control protein CH43_519 SM00382 ATPases associated with a variety of cellular activities CH43_537 SM00487 DEAD-like helicases superfamily CH43_537 SM00490 helicase superfamily c-terminal domain CH43_539 SM00354 helix_turn _helix lactose operon repressor CH43_542 SM00382 ATPases associated with a variety of cellular activities CH43_542 SM01086 C-terminal, D2-small domain, of ClpB protein CH43_548 SM00382 ATPases associated with a variety of cellular activities CH43_549 SM01321 CH43_549 CH43_570 SM00448 cheY-homologous receiver domain CH43_570 SM00862 Transcriptional regulatory protein, C terminal CH43_571 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH43_571 SM00387 Histidine kinase-like ATPases CH43_571 SM00388 His Kinase A (phosphoacceptor) domain CH43_572 SM00342 helix_turn_helix, arabinose operon control protein CH43_574 SM00971 Serine acetyltransferase, N-terminal CH43_578 SM00450 Rhodanese Homology Domain CH43_583 SM00829 Enoylreductase CH43_590 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CH43_590 SM01232 CH43_590 CH43_602 SM00532 Ligase N family CH43_603 SM00072 Guanylate kinase homologues. CH43_604 SM01409 CH43_604 CH43_605 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH43_605 SM00954 Region found in RelA / SpoT proteins CH43_607 SM00487 DEAD-like helicases superfamily CH43_607 SM00490 helicase superfamily c-terminal domain CH43_613 SM00382 ATPases associated with a variety of cellular activities CH43_618 SM01230 CH43_618 CH43_619 SM00091 PAS domain CH43_619 SM00387 Histidine kinase-like ATPases CH43_619 SM00388 His Kinase A (phosphoacceptor) domain CH43_620 SM00382 ATPases associated with a variety of cellular activities CH43_620 SM00448 cheY-homologous receiver domain CH43_621 SM00729 Elongator protein 3, MiaB family, Radical SAM CH43_624 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH43_624 SM00474 3'-5' exonuclease CH43_624 SM00475 5'-3' exonuclease CH43_624 SM00482 DNA polymerase A domain CH43_635 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH43_635 SM00895 CH43_635 CH43_642 SM00382 ATPases associated with a variety of cellular activities CH43_643 SM00327 von Willebrand factor (vWF) type A domain CH43_645 SM00344 helix_turn_helix ASNC type CH43_647 SM01228 CH43_647 CH43_656 SM00382 ATPases associated with a variety of cellular activities CH43_663 SM00382 ATPases associated with a variety of cellular activities CH43_666 SM00062 Bacterial periplasmic substrate-binding proteins CH43_676 SM01234 CH43_676 CH43_680 SM00382 ATPases associated with a variety of cellular activities CH43_680 SM00760 Bacterial dnaA protein helix-turn-helix domain CH43_681 SM00480 DNA polymerase III beta subunit CH43_683 SM00387 Histidine kinase-like ATPases CH43_683 SM00433 TopoisomeraseII CH43_697 SM00642 Alpha-amylase domain CH43_7 SM00382 ATPases associated with a variety of cellular activities CH43_70 SM00387 Histidine kinase-like ATPases CH43_71 SM00493 CH43_71 CH43_715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH43_715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH43_715 SM01358 CH43_715 CH43_718 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH43_73 SM00382 ATPases associated with a variety of cellular activities CH43_733 SM00420 helix_turn_helix, Deoxyribose operon repressor CH43_733 SM01134 CH43_733 CH43_735 SM00450 Rhodanese Homology Domain CH43_736 SM00421 helix_turn_helix, Lux Regulon CH43_745 SM00899 CH43_745 CH43_746 SM00316 Ribosomal protein S1-like RNA-binding domain CH43_746 SM00732 Likely ribonuclease with RNase H fold. CH43_748 SM00448 cheY-homologous receiver domain CH43_748 SM00862 Transcriptional regulatory protein, C terminal CH43_749 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH43_749 SM00387 Histidine kinase-like ATPases CH43_749 SM00388 His Kinase A (phosphoacceptor) domain CH43_752 SM00363 S4 RNA-binding domain CH43_777 SM00354 helix_turn _helix lactose operon repressor CH43_784 SM00100 Cyclic nucleotide-monophosphate binding domain CH43_784 SM00419 helix_turn_helix, cAMP Regulatory protein CH43_791 SM00062 Bacterial periplasmic substrate-binding proteins CH43_792 SM00382 ATPases associated with a variety of cellular activities CH43_798 SM00382 ATPases associated with a variety of cellular activities CH43_811 SM00838 Elongation factor G C-terminus CH43_811 SM00889 Elongation factor G, domain IV CH43_813 SM01321 CH43_813 CH43_816 SM01403 CH43_816 CH43_820 SM01382 CH43_820 CH43_820 SM01383 CH43_820 CH43_823 SM00322 K homology RNA-binding domain CH43_827 SM01374 CH43_827 CH43_828 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH43_841 SM00363 S4 RNA-binding domain CH43_841 SM01390 CH43_841 CH43_842 SM00662 RNA polymerases D CH43_844 SM00422 helix_turn_helix, mercury resistance CH43_865 SM00382 ATPases associated with a variety of cellular activities CH43_872 SM00421 helix_turn_helix, Lux Regulon CH43_872 SM00448 cheY-homologous receiver domain CH43_873 SM00387 Histidine kinase-like ATPases CH43_873 SM00388 His Kinase A (phosphoacceptor) domain CH43_873 SM00448 cheY-homologous receiver domain CH43_877 SM00342 helix_turn_helix, arabinose operon control protein CH43_885 SM00382 ATPases associated with a variety of cellular activities CH43_898 SM00382 ATPases associated with a variety of cellular activities CH43_906 SM00729 Elongator protein 3, MiaB family, Radical SAM CH43_91 SM00938 Nitrogen regulatory protein P-II CH43_92 SM00382 ATPases associated with a variety of cellular activities CH43_925 SM00060 Fibronectin type 3 domain CH43_93 SM00382 ATPases associated with a variety of cellular activities CH43_930 SM00563 Phosphate acyltransferases CH43_936 SM00829 Enoylreductase CH43_937 SM00382 ATPases associated with a variety of cellular activities CH43_938 SM01005 Alanine racemase, C-terminal domain CH43_94 SM00344 helix_turn_helix ASNC type CH43_945 SM01007 Class II Aldolase and Adducin N-terminal domain CH43_950 SM00342 helix_turn_helix, arabinose operon control protein CH43_951 SM00342 helix_turn_helix, arabinose operon control protein CH43_955 SM01276 CH43_955 CH43_961 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH43_967 SM00883 Chaperonin 10 Kd subunit CH43_971 SM00841 Elongation factor P, C-terminal CH43_971 SM01185 CH43_971 CH43_981 SM00479 CH43_981 CH43_987 SM00257 Lysin motif CH43_987 SM00646 CH43_987 CH43_988 SM00853 MutL C terminal dimerisation domain CH43_988 SM01340 CH43_988 CH43_992 SM00244 prohibitin homologues CH43_993 SM00244 prohibitin homologues CH43_995 SM00788 Adenylosuccinate synthetase CH43_997 SM00316 Ribosomal protein S1-like RNA-binding domain CH43_997 SM00357 Cold shock protein domain CH43_997 SM00955 CH43_997 CH43_998 SM00967 RNA 2'-O ribose methyltransferase substrate binding