locus-tag class description S96127_0001 PF00712 DNA polymerase III beta subunit, N-terminal domain S96127_0001 PF02767 DNA polymerase III beta subunit, central domain S96127_0001 PF02768 DNA polymerase III beta subunit, C-terminal domain S96127_0003 PF02463 RecF/RecN/SMC N terminal domain S96127_0004 PF00204 DNA gyrase B S96127_0004 PF01751 Toprim domain S96127_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_0004 PF18053 DNA gyrase B subunit insert domain S96127_0004 PF00986 DNA gyrase B subunit, carboxyl terminus S96127_0006 PF13276 HTH-like domain S96127_0006 PF00665 Integrase core domain S96127_0006 PF13333 Integrase core domain S96127_0008 PF00311 Phosphoenolpyruvate carboxylase S96127_0009 PF01546 Peptidase family M20/M25/M40 S96127_0009 PF07687 Peptidase dimerisation domain S96127_0010 PF01118 Semialdehyde dehydrogenase, NAD binding domain S96127_0010 PF02774 Semialdehyde dehydrogenase, dimerisation domain S96127_0011 PF00696 Amino acid kinase family S96127_0012 PF14698 Argininosuccinate lyase C-terminal S96127_0012 PF00206 Lyase S96127_0014 PF00593 TonB dependent receptor S96127_0014 PF07715 TonB-dependent Receptor Plug Domain S96127_0016 PF00664 ABC transporter transmembrane region S96127_0016 PF00005 ABC transporter S96127_0018 PF00529 HlyD membrane-fusion protein of T1SS S96127_0019 PF03544 Gram-negative bacterial TonB protein C-terminal S96127_0020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain S96127_0020 PF07992 Pyridine nucleotide-disulphide oxidoreductase S96127_0021 PF00462 Glutaredoxin S96127_0021 PF08534 Redoxin S96127_0022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_0022 PF03466 LysR substrate binding domain S96127_0023 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain S96127_0023 PF07992 Pyridine nucleotide-disulphide oxidoreductase S96127_0024 PF00440 Bacterial regulatory proteins, tetR family S96127_0025 PF07226 Protein of unknown function (DUF1422) S96127_0026 PF05958 tRNA (Uracil-5-)-methyltransferase S96127_0027 PF07715 TonB-dependent Receptor Plug Domain S96127_0027 PF00593 TonB dependent receptor S96127_0028 PF01177 Asp/Glu/Hydantoin racemase S96127_0030 PF13407 Periplasmic binding protein domain S96127_0031 PF00005 ABC transporter S96127_0032 PF02653 Branched-chain amino acid transport system / permease component S96127_0033 PF02653 Branched-chain amino acid transport system / permease component S96127_0034 PF03466 LysR substrate binding domain S96127_0034 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_0035 PF04219 Protein of unknown function, DUF S96127_0036 PF13335 Magnesium chelatase, subunit ChlI C-terminal S96127_0036 PF01078 Magnesium chelatase, subunit ChlI S96127_0038 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain S96127_0038 PF00205 Thiamine pyrophosphate enzyme, central domain S96127_0038 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain S96127_0040 PF01063 Amino-transferase class IV S96127_0042 PF00920 Dehydratase family S96127_0043 PF00585 C-terminal regulatory domain of Threonine dehydratase S96127_0043 PF00291 Pyridoxal-phosphate dependent enzyme S96127_0050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_0050 PF03466 LysR substrate binding domain S96127_0051 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain S96127_0051 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain S96127_0056 PF01320 Colicin immunity protein / pyocin immunity protein S96127_0057 PF02753 Pili assembly chaperone PapD, C-terminal domain S96127_0057 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain S96127_0059 PF13953 PapC C-terminal domain S96127_0059 PF13954 PapC N-terminal domain S96127_0059 PF00577 Outer membrane usher protein S96127_0060 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain S96127_0060 PF02753 Pili assembly chaperone PapD, C-terminal domain S96127_0062 PF00872 Transposase, Mutator family S96127_0066 PF13361 UvrD-like helicase C-terminal domain S96127_0066 PF00580 UvrD/REP helicase N-terminal domain S96127_0067 PF02541 Ppx/GppA phosphatase family S96127_0068 PF02541 Ppx/GppA phosphatase family S96127_0069 PF00271 Helicase conserved C-terminal domain S96127_0069 PF00270 DEAD/DEAH box helicase S96127_0070 PF00085 Thioredoxin S96127_0071 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S96127_0071 PF07497 Rho termination factor, RNA-binding domain S96127_0071 PF07498 Rho termination factor, N-terminal domain S96127_0072 PF00953 Glycosyl transferase family 4 S96127_0073 PF02706 Chain length determinant protein S96127_0074 PF02350 UDP-N-acetylglucosamine 2-epimerase S96127_0075 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain S96127_0075 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain S96127_0075 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain S96127_0076 PF16363 GDP-mannose 4,6 dehydratase S96127_0077 PF00483 Nucleotidyl transferase S96127_0079 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family S96127_0080 PF01943 Polysaccharide biosynthesis protein S96127_0081 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 S96127_0082 PF06899 WzyE protein, O-antigen assembly polymerase S96127_0083 PF03808 Glycosyl transferase WecB/TagA/CpsF family S96127_0084 PF00324 Amino acid permease S96127_0088 PF07719 Tetratricopeptide repeat S96127_0088 PF07219 HemY protein N-terminus S96127_0089 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase S96127_0090 PF02602 Uroporphyrinogen-III synthase HemD S96127_0091 PF03900 Porphobilinogen deaminase, C-terminal domain S96127_0091 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain S96127_0093 PF01295 Adenylate cyclase, class-I S96127_0093 PF12633 Adenylate cyclase NT domain S96127_0094 PF01491 Frataxin-like domain S96127_0095 PF13627 Prokaryotic lipoprotein-attachment site S96127_0096 PF01678 Diaminopimelate epimerase S96127_0097 PF04340 Protein of unknown function, DUF484 S96127_0098 PF00589 Phage integrase family S96127_0098 PF02899 Phage integrase, N-terminal SAM-like domain S96127_0099 PF13419 Haloacid dehalogenase-like hydrolase S96127_0100 PF13361 UvrD-like helicase C-terminal domain S96127_0100 PF00580 UvrD/REP helicase N-terminal domain S96127_0103 PF09370 Phosphoenolpyruvate hydrolase-like S96127_0104 PF01544 CorA-like Mg2+ transporter protein S96127_0105 PF00892 EamA-like transporter family S96127_0106 PF03061 Thioesterase superfamily S96127_0107 PF02253 Phospholipase A1 S96127_0108 PF00270 DEAD/DEAH box helicase S96127_0108 PF00271 Helicase conserved C-terminal domain S96127_0108 PF00570 HRDC domain S96127_0108 PF16124 RecQ zinc-binding S96127_0108 PF09382 RQC domain S96127_0109 PF01810 LysE type translocator S96127_0110 PF01810 LysE type translocator S96127_0111 PF12146 Serine aminopeptidase, S33 S96127_0114 PF03009 Glycerophosphoryl diester phosphodiesterase family S96127_0116 PF01266 FAD dependent oxidoreductase S96127_0116 PF04324 BFD-like [2Fe-2S] binding domain S96127_0117 PF00890 FAD binding domain S96127_0118 PF13183 4Fe-4S dicluster domain S96127_0118 PF02754 Cysteine-rich domain S96127_0119 PF08786 DcrB S96127_0120 PF02592 Putative vitamin uptake transporter S96127_0121 PF01206 Sulfurtransferase TusA S96127_0122 PF00403 Heavy-metal-associated domain S96127_0123 PF07947 YhhN family S96127_0126 PF06611 Protein of unknown function (DUF1145) S96127_0128 PF00448 SRP54-type protein, GTPase domain S96127_0128 PF02881 SRP54-type protein, helical bundle domain S96127_0128 PF02881 SRP54-type protein, helical bundle domain S96127_0128 PF00448 SRP54-type protein, GTPase domain S96127_0129 PF00005 ABC transporter S96127_0130 PF18075 FtsX extracellular domain S96127_0130 PF02687 FtsX-like permease family S96127_0131 PF04542 Sigma-70 region 2 S96127_0131 PF04545 Sigma-70, region 4 S96127_0131 PF00140 Sigma-70 factor, region 1.2 S96127_0133 PF01797 Transposase IS200 like S96127_0134 PF12568 Acetyltransferase (GNAT) domain, PanZ S96127_0135 PF13458 Periplasmic binding protein S96127_0136 PF02653 Branched-chain amino acid transport system / permease component S96127_0137 PF11862 Domain of unknown function (DUF3382) S96127_0137 PF02653 Branched-chain amino acid transport system / permease component S96127_0138 PF12399 Branched-chain amino acid ATP-binding cassette transporter S96127_0138 PF00005 ABC transporter S96127_0139 PF00005 ABC transporter S96127_0147 PF13416 Bacterial extracellular solute-binding protein S96127_0148 PF00528 Binding-protein-dependent transport system inner membrane component S96127_0149 PF00528 Binding-protein-dependent transport system inner membrane component S96127_0150 PF00005 ABC transporter S96127_0150 PF17912 MalK OB fold domain S96127_0151 PF03009 Glycerophosphoryl diester phosphodiesterase family S96127_0152 PF03547 Membrane transport protein S96127_0153 PF00892 EamA-like transporter family S96127_0154 PF03466 LysR substrate binding domain S96127_0154 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_0155 PF08267 Cobalamin-independent synthase, N-terminal domain S96127_0155 PF01717 Cobalamin-independent synthase, Catalytic domain S96127_0156 PF01738 Dienelactone hydrolase family S96127_0157 PF01048 Phosphorylase superfamily S96127_0159 PF13722 5TM C-terminal transporter carbon starvation CstA S96127_0159 PF02554 Carbon starvation protein CstA S96127_0160 PF09335 SNARE associated Golgi protein S96127_0161 PF02646 RmuC family S96127_0162 PF01209 ubiE/COQ5 methyltransferase family S96127_0163 PF02036 SCP-2 sterol transfer family S96127_0164 PF03109 ABC1 family S96127_0165 PF02416 mttA/Hcf106 family S96127_0167 PF00902 Sec-independent protein translocase protein (TatC) S96127_0168 PF01026 TatD related DNase S96127_0169 PF00665 Integrase core domain S96127_0169 PF02796 Helix-turn-helix domain of resolvase S96127_0170 PF01695 IstB-like ATP binding protein S96127_0171 PF01026 TatD related DNase S96127_0172 PF00490 Delta-aminolevulinic acid dehydratase S96127_0173 PF02357 Transcription termination factor nusG S96127_0174 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase S96127_0175 PF00175 Oxidoreductase NAD-binding domain S96127_0175 PF00970 Oxidoreductase FAD-binding domain S96127_0176 PF02803 Thiolase, C-terminal domain S96127_0176 PF00108 Thiolase, N-terminal domain S96127_0177 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain S96127_0177 PF00378 Enoyl-CoA hydratase/isomerase S96127_0177 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain S96127_0178 PF00557 Metallopeptidase family M24 S96127_0179 PF09186 Domain of unknown function (DUF1949) S96127_0179 PF01205 Uncharacterized protein family UPF0029 S96127_0181 PF01205 Uncharacterized protein family UPF0029 S96127_0181 PF09186 Domain of unknown function (DUF1949) S96127_0182 PF02386 Cation transport protein S96127_0183 PF12724 Flavodoxin domain S96127_0185 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain S96127_0185 PF01565 FAD binding domain S96127_0186 PF02237 Biotin protein ligase C terminal domain S96127_0186 PF03099 Biotin/lipoate A/B protein ligase family S96127_0186 PF08279 HTH domain S96127_0187 PF00485 Phosphoribulokinase / Uridine kinase family S96127_0188 PF13673 Acetyltransferase (GNAT) domain S96127_0189 PF00665 Integrase core domain S96127_0189 PF02796 Helix-turn-helix domain of resolvase S96127_0190 PF01695 IstB-like ATP binding protein S96127_0191 PF03143 Elongation factor Tu C-terminal domain S96127_0191 PF03144 Elongation factor Tu domain 2 S96127_0191 PF00009 Elongation factor Tu GTP binding domain S96127_0192 PF00584 SecE/Sec61-gamma subunits of protein translocation complex S96127_0193 PF02357 Transcription termination factor nusG S96127_0193 PF00467 KOW motif S96127_0194 PF00298 Ribosomal protein L11, RNA binding domain S96127_0194 PF03946 Ribosomal protein L11, N-terminal domain S96127_0195 PF00687 Ribosomal protein L1p/L10e family S96127_0196 PF00466 Ribosomal protein L10 S96127_0197 PF16320 Ribosomal protein L7/L12 dimerisation domain S96127_0197 PF00542 Ribosomal protein L7/L12 C-terminal domain S96127_0198 PF04561 RNA polymerase Rpb2, domain 2 S96127_0198 PF04563 RNA polymerase beta subunit S96127_0198 PF00562 RNA polymerase Rpb2, domain 6 S96127_0198 PF04560 RNA polymerase Rpb2, domain 7 S96127_0198 PF04565 RNA polymerase Rpb2, domain 3 S96127_0198 PF10385 RNA polymerase beta subunit external 1 domain S96127_0199 PF00623 RNA polymerase Rpb1, domain 2 S96127_0199 PF04983 RNA polymerase Rpb1, domain 3 S96127_0199 PF04997 RNA polymerase Rpb1, domain 1 S96127_0199 PF04998 RNA polymerase Rpb1, domain 5 S96127_0199 PF05000 RNA polymerase Rpb1, domain 4 S96127_0200 PF01797 Transposase IS200 like S96127_0202 PF06968 Biotin and Thiamin Synthesis associated domain S96127_0202 PF04055 Radical SAM superfamily S96127_0203 PF05690 Thiazole biosynthesis protein ThiG S96127_0205 PF00899 ThiF family S96127_0206 PF02581 Thiamine monophosphate synthase S96127_0207 PF01964 Radical SAM ThiC family S96127_0207 PF13667 ThiC-associated domain S96127_0208 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ S96127_0209 PF09297 NADH pyrophosphatase zinc ribbon domain S96127_0209 PF00293 NUDIX domain S96127_0211 PF01208 Uroporphyrinogen decarboxylase (URO-D) S96127_0212 PF04493 Endonuclease V S96127_0213 PF04222 Protein of unknown function (DUF416) S96127_0214 PF00216 Bacterial DNA-binding protein S96127_0215 PF07356 Protein of unknown function (DUF1481) S96127_0216 PF02844 Phosphoribosylglycinamide synthetase, N domain S96127_0216 PF02843 Phosphoribosylglycinamide synthetase, C domain S96127_0216 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain S96127_0217 PF01808 AICARFT/IMPCHase bienzyme S96127_0217 PF02142 MGS-like domain S96127_0221 PF01527 Transposase S96127_0222 PF13683 Integrase core domain S96127_0222 PF13276 HTH-like domain S96127_0223 PF01367 5'-3' exonuclease, C-terminal SAM fold S96127_0223 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain S96127_0224 PF01695 IstB-like ATP binding protein S96127_0225 PF00665 Integrase core domain S96127_0225 PF02796 Helix-turn-helix domain of resolvase S96127_0227 PF00474 Sodium:solute symporter family S96127_0228 PF04341 Protein of unknown function, DUF485 S96127_0229 PF16177 Acetyl-coenzyme A synthetase N-terminus S96127_0229 PF00501 AMP-binding enzyme S96127_0229 PF13193 AMP-binding enzyme C-terminal domain S96127_0230 PF00375 Sodium:dicarboxylate symporter family S96127_0231 PF00196 Bacterial regulatory proteins, luxR family S96127_0231 PF00072 Response regulator receiver domain S96127_0232 PF00072 Response regulator receiver domain S96127_0232 PF01627 Hpt domain S96127_0232 PF00512 His Kinase A (phospho-acceptor) domain S96127_0232 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_0232 PF00672 HAMP domain S96127_0232 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) S96127_0234 PF00263 Bacterial type II and III secretion system protein S96127_0234 PF03958 Bacterial type II/III secretion system short domain S96127_0237 PF14525 AraC-binding-like domain S96127_0237 PF12833 Helix-turn-helix domain S96127_0241 PF01514 Secretory protein of YscJ/FliF family S96127_0244 PF00771 FHIPEP family S96127_0245 PF00771 FHIPEP family S96127_0246 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S96127_0246 PF18269 T3SS EscN ATPase C-terminal domain S96127_0249 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term S96127_0250 PF00813 FliP family S96127_0251 PF01313 Bacterial export proteins, family 3 S96127_0252 PF01311 Bacterial export proteins, family 1 S96127_0253 PF01312 FlhB HrpN YscU SpaS Family S96127_0254 PF04143 Sulphur transport S96127_0255 PF01206 Sulfurtransferase TusA S96127_0256 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_0256 PF03466 LysR substrate binding domain S96127_0257 PF03222 Tryptophan/tyrosine permease family S96127_0258 PF01053 Cys/Met metabolism PLP-dependent enzyme S96127_0259 PF00005 ABC transporter S96127_0260 PF01032 FecCD transport family S96127_0261 PF01497 Periplasmic binding protein S96127_0262 PF05171 Haemin-degrading HemS.ChuX domain S96127_0263 PF00593 TonB dependent receptor S96127_0263 PF07715 TonB-dependent Receptor Plug Domain S96127_0264 PF13460 NAD(P)H-binding S96127_0265 PF06228 Haem utilisation ChuX/HutX S96127_0266 PF04055 Radical SAM superfamily S96127_0270 PF11202 Phosphoribosyl transferase (PRTase) S96127_0270 PF15608 PELOTA RNA binding domain S96127_0274 PF02342 TerD domain S96127_0275 PF02342 TerD domain S96127_0276 PF05099 Tellurite resistance protein TerB S96127_0277 PF03741 Integral membrane protein TerC family S96127_0278 PF02342 TerD domain S96127_0279 PF02342 TerD domain S96127_0281 PF00577 Outer membrane usher protein S96127_0281 PF13954 PapC N-terminal domain S96127_0281 PF13953 PapC C-terminal domain S96127_0282 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain S96127_0287 PF08031 Berberine and berberine like S96127_0287 PF01565 FAD binding domain S96127_0288 PF12951 Passenger-associated-transport-repeat S96127_0289 PF04345 Chorismate lyase S96127_0290 PF01040 UbiA prenyltransferase family S96127_0291 PF01553 Acyltransferase S96127_0292 PF01219 Prokaryotic diacylglycerol kinase S96127_0293 PF01726 LexA DNA binding domain S96127_0293 PF00717 Peptidase S24-like S96127_0294 PF01475 Ferric uptake regulator family S96127_0295 PF01207 Dihydrouridine synthase (Dus) S96127_0296 PF09583 Phage shock protein G (Phageshock_PspG) S96127_0297 PF00107 Zinc-binding dehydrogenase S96127_0297 PF08240 Alcohol dehydrogenase GroES-like domain S96127_0298 PF03796 DnaB-like helicase C terminal domain S96127_0298 PF00772 DnaB-like helicase N terminal domain S96127_0299 PF00842 Alanine racemase, C-terminal domain S96127_0299 PF01168 Alanine racemase, N-terminal domain S96127_0300 PF00155 Aminotransferase class I and II S96127_0301 PF04237 YjbR S96127_0302 PF00005 ABC transporter S96127_0302 PF17755 UvrA DNA-binding domain S96127_0302 PF17760 UvrA interaction domain S96127_0303 PF00436 Single-strand binding protein family S96127_0304 PF05336 L-rhamnose mutarotase S96127_0305 PF00465 Iron-containing alcohol dehydrogenase S96127_0306 PF00596 Class II Aldolase and Adducin N-terminal domain S96127_0307 PF06134 L-rhamnose isomerase (RhaA) S96127_0308 PF00370 FGGY family of carbohydrate kinases, N-terminal domain S96127_0308 PF02782 FGGY family of carbohydrate kinases, C-terminal domain S96127_0311 PF12833 Helix-turn-helix domain S96127_0311 PF02311 AraC-like ligand binding domain S96127_0312 PF02311 AraC-like ligand binding domain S96127_0312 PF12833 Helix-turn-helix domain S96127_0313 PF06379 L-rhamnose-proton symport protein (RhaT) S96127_0315 PF03400 IS1 transposase S96127_0319 PF13247 4Fe-4S dicluster domain S96127_0319 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster S96127_0319 PF07992 Pyridine nucleotide-disulphide oxidoreductase S96127_0320 PF13247 4Fe-4S dicluster domain S96127_0320 PF12800 4Fe-4S binding domain S96127_0321 PF00384 Molybdopterin oxidoreductase S96127_0321 PF01568 Molydopterin dinucleotide binding domain S96127_0321 PF04879 Molybdopterin oxidoreductase Fe4S4 domain S96127_0322 PF02683 Cytochrome C biogenesis protein transmembrane region S96127_0322 PF11412 Disulphide bond corrector protein DsbC S96127_0323 PF03091 CutA1 divalent ion tolerance protein S96127_0324 PF03605 Anaerobic c4-dicarboxylate membrane transporter S96127_0325 PF00206 Lyase S96127_0325 PF10415 Fumarase C C-terminus S96127_0326 PF04186 FxsA cytoplasmic membrane protein S96127_0327 PF00166 Chaperonin 10 Kd subunit S96127_0328 PF00118 TCP-1/cpn60 chaperonin family S96127_0330 PF13698 Domain of unknown function (DUF4156) S96127_0331 PF04055 Radical SAM superfamily S96127_0332 PF09285 Elongation factor P, C-terminal S96127_0332 PF08207 Elongation factor P (EF-P) KOW-like domain S96127_0332 PF01132 Elongation factor P (EF-P) OB domain S96127_0333 PF00893 Small Multidrug Resistance protein S96127_0335 PF02313 Fumarate reductase subunit D S96127_0336 PF02300 Fumarate reductase subunit C S96127_0337 PF13085 2Fe-2S iron-sulfur cluster binding domain S96127_0337 PF13183 4Fe-4S dicluster domain S96127_0338 PF00890 FAD binding domain S96127_0338 PF02910 Fumarate reductase flavoprotein C-term S96127_0339 PF00152 tRNA synthetases class II (D, K and N) S96127_0340 PF12794 Mechanosensitive ion channel inner membrane domain 1 S96127_0340 PF12795 Mechanosensitive ion channel porin domain S96127_0340 PF00924 Mechanosensitive ion channel S96127_0341 PF02666 Phosphatidylserine decarboxylase S96127_0342 PF03193 RsgA GTPase S96127_0344 PF00929 Exonuclease S96127_0346 PF08331 Domain of unknown function (DUF1730) S96127_0347 PF01256 Carbohydrate kinase S96127_0347 PF03853 YjeF-related protein N-terminus S96127_0348 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE S96127_0349 PF01520 N-acetylmuramoyl-L-alanine amidase S96127_0350 PF08676 MutL C terminal dimerisation domain S96127_0350 PF01119 DNA mismatch repair protein, C-terminal domain S96127_0352 PF17209 Hfq protein S96127_0353 PF16360 GTP-binding GTPase Middle Region S96127_0353 PF13167 GTP-binding GTPase N-terminal S96127_0353 PF01926 50S ribosome-binding GTPase S96127_0354 PF12221 Bacterial membrane protein N terminal S96127_0354 PF01145 SPFH domain / Band 7 family S96127_0355 PF01145 SPFH domain / Band 7 family S96127_0356 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) S96127_0357 PF00709 Adenylosuccinate synthetase S96127_0358 PF02082 Transcriptional regulator S96127_0359 PF08206 Ribonuclease B OB domain S96127_0359 PF17876 Cold shock domain S96127_0359 PF00773 RNB domain S96127_0359 PF00575 S1 RNA binding domain S96127_0359 PF08461 Ribonuclease R winged-helix domain S96127_0361 PF00588 SpoU rRNA Methylase family S96127_0361 PF08032 RNA 2'-O ribose methyltransferase substrate binding S96127_0362 PF00441 Acyl-CoA dehydrogenase, C-terminal domain S96127_0362 PF02770 Acyl-CoA dehydrogenase, middle domain S96127_0362 PF18158 Adaptive response protein AidB N-terminal domain S96127_0363 PF07338 Protein of unknown function (DUF1471) S96127_0365 PF01695 IstB-like ATP binding protein S96127_0366 PF02796 Helix-turn-helix domain of resolvase S96127_0366 PF00665 Integrase core domain S96127_0367 PF00326 Prolyl oligopeptidase family S96127_0369 PF01250 Ribosomal protein S6 S96127_0370 PF00436 Single-strand binding protein family S96127_0371 PF01084 Ribosomal protein S18 S96127_0372 PF03948 Ribosomal protein L9, C-terminal domain S96127_0372 PF01281 Ribosomal protein L9, N-terminal domain S96127_0374 PF01797 Transposase IS200 like S96127_0376 PF08525 Opacity-associated protein A N-terminal motif S96127_0376 PF04225 Opacity-associated protein A LysM-like domain S96127_0377 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase S96127_0377 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase S96127_0378 PF04405 Domain of Unknown function (DUF542) S96127_0378 PF01814 Hemerythrin HHE cation binding domain S96127_0379 PF02872 5'-nucleotidase, C-terminal domain S96127_0379 PF00149 Calcineurin-like phosphoesterase S96127_0380 PF00459 Inositol monophosphatase family S96127_0381 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) S96127_0382 PF06526 Protein of unknown function (DUF1107) S96127_0383 PF01595 Cyclin M transmembrane N-terminal domain S96127_0383 PF00571 CBS domain S96127_0383 PF03471 Transporter associated domain S96127_0384 PF01625 Peptide methionine sulfoxide reductase S96127_0385 PF17243 POTRA domain TamA domain 1 S96127_0385 PF01103 Surface antigen S96127_0385 PF07244 Surface antigen variable number repeat S96127_0386 PF04357 TamB, inner membrane protein subunit of TAM complex S96127_0387 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like S96127_0388 PF00719 Inorganic pyrophosphatase S96127_0389 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain S96127_0390 PF08245 Mur ligase middle domain S96127_0390 PF02875 Mur ligase family, glutamate ligase domain S96127_0390 PF01225 Mur ligase family, catalytic domain S96127_0392 PF02863 Arginine repressor, C-terminal domain S96127_0392 PF01316 Arginine repressor, DNA binding domain S96127_0393 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain S96127_0393 PF00056 lactate/malate dehydrogenase, NAD binding domain S96127_0395 PF00348 Polyprenyl synthetase S96127_0396 PF00829 Ribosomal prokaryotic L21 protein S96127_0397 PF01016 Ribosomal L27 protein S96127_0398 PF00892 EamA-like transporter family S96127_0399 PF01018 GTP1/OBG S96127_0399 PF01926 50S ribosome-binding GTPase S96127_0400 PF00672 HAMP domain S96127_0400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_0400 PF00512 His Kinase A (phospho-acceptor) domain S96127_0401 PF00486 Transcriptional regulatory protein, C terminal S96127_0401 PF00072 Response regulator receiver domain S96127_0402 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family S96127_0403 PF01272 Transcription elongation factor, GreA/GreB, C-term S96127_0403 PF03449 Transcription elongation factor, N-terminal S96127_0404 PF01985 CRS1 / YhbY (CRM) domain S96127_0405 PF01728 FtsJ-like methyltransferase S96127_0406 PF01434 Peptidase family M41 S96127_0406 PF06480 FtsH Extracellular S96127_0406 PF00004 ATPase family associated with various cellular activities (AAA) S96127_0406 PF17862 AAA+ lid domain S96127_0407 PF00809 Pterin binding enzyme S96127_0408 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II S96127_0408 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain S96127_0408 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III S96127_0408 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I S96127_0409 PF03840 Preprotein translocase SecG subunit S96127_0410 PF17384 RimP C-terminal SH3 domain S96127_0410 PF02576 RimP N-terminal domain S96127_0411 PF13184 NusA-like KH domain S96127_0411 PF00575 S1 RNA binding domain S96127_0411 PF08529 NusA N-terminal domain S96127_0412 PF04760 Translation initiation factor IF-2, N-terminal region S96127_0412 PF08364 Bacterial translation initiation factor IF-2 associated region S96127_0412 PF11987 Translation-initiation factor 2 S96127_0412 PF03144 Elongation factor Tu domain 2 S96127_0412 PF00009 Elongation factor Tu GTP binding domain S96127_0413 PF02033 Ribosome-binding factor A S96127_0414 PF09157 Pseudouridine synthase II TruB, C-terminal S96127_0414 PF16198 tRNA pseudouridylate synthase B C-terminal domain S96127_0414 PF01509 TruB family pseudouridylate synthase (N terminal domain) S96127_0415 PF00312 Ribosomal protein S15 S96127_0417 PF00665 Integrase core domain S96127_0417 PF13333 Integrase core domain S96127_0417 PF13276 HTH-like domain S96127_0418 PF08448 PAS fold S96127_0418 PF00563 EAL domain S96127_0418 PF08447 PAS fold S96127_0418 PF00990 Diguanylate cyclase, GGDEF domain S96127_0420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S96127_0420 PF00529 HlyD membrane-fusion protein of T1SS S96127_0421 PF00873 AcrB/AcrD/AcrF family S96127_0422 PF07906 ShET2 enterotoxin, N-terminal region S96127_0425 PF03797 Autotransporter beta-domain S96127_0426 PF14496 C-terminal novel E3 ligase, LRR-interacting S96127_0426 PF12468 Type III secretion system leucine rich repeat protein S96127_0427 PF14496 C-terminal novel E3 ligase, LRR-interacting S96127_0427 PF12468 Type III secretion system leucine rich repeat protein S96127_0427 PF14496 C-terminal novel E3 ligase, LRR-interacting S96127_0427 PF12468 Type III secretion system leucine rich repeat protein S96127_0428 PF14496 C-terminal novel E3 ligase, LRR-interacting S96127_0428 PF12468 Type III secretion system leucine rich repeat protein S96127_0429 PF03806 AbgT putative transporter family S96127_0430 PF01546 Peptidase family M20/M25/M40 S96127_0430 PF07687 Peptidase dimerisation domain S96127_0431 PF00593 TonB dependent receptor S96127_0431 PF07715 TonB-dependent Receptor Plug Domain S96127_0432 PF00501 AMP-binding enzyme S96127_0432 PF02801 Beta-ketoacyl synthase, C-terminal domain S96127_0432 PF00109 Beta-ketoacyl synthase, N-terminal domain S96127_0432 PF16197 Ketoacyl-synthetase C-terminal extension S96127_0432 PF00668 Condensation domain S96127_0432 PF13193 AMP-binding enzyme C-terminal domain S96127_0432 PF00202 Aminotransferase class-III S96127_0432 PF00550 Phosphopantetheine attachment site S96127_0433 PF00665 Integrase core domain S96127_0433 PF02796 Helix-turn-helix domain of resolvase S96127_0434 PF01695 IstB-like ATP binding protein S96127_0436 PF00550 Phosphopantetheine attachment site S96127_0436 PF00501 AMP-binding enzyme S96127_0436 PF08242 Methyltransferase domain S96127_0436 PF00668 Condensation domain S96127_0437 PF13193 AMP-binding enzyme C-terminal domain S96127_0437 PF00668 Condensation domain S96127_0437 PF00501 AMP-binding enzyme S96127_0438 PF00501 AMP-binding enzyme S96127_0438 PF08242 Methyltransferase domain S96127_0438 PF00550 Phosphopantetheine attachment site S96127_0438 PF00668 Condensation domain S96127_0441 PF00975 Thioesterase domain S96127_0443 PF08021 Siderophore-interacting FAD-binding domain S96127_0443 PF00664 ABC transporter transmembrane region S96127_0443 PF00005 ABC transporter S96127_0443 PF04954 Siderophore-interacting protein S96127_0444 PF00005 ABC transporter S96127_0444 PF00664 ABC transporter transmembrane region S96127_0447 PF02447 GntP family permease S96127_0450 PF12951 Passenger-associated-transport-repeat S96127_0451 PF12951 Passenger-associated-transport-repeat S96127_0452 PF04717 Type VI secretion system, phage-baseplate injector S96127_0454 PF05593 RHS Repeat S96127_0454 PF03527 RHS protein S96127_0458 PF00939 Sodium:sulfate symporter transmembrane region S96127_0459 PF00356 Bacterial regulatory proteins, lacI family S96127_0463 PF07715 TonB-dependent Receptor Plug Domain S96127_0463 PF00593 TonB dependent receptor S96127_0464 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) S96127_0465 PF04183 IucA / IucC family S96127_0465 PF06276 Ferric iron reductase FhuF-like transporter S96127_0467 PF04183 IucA / IucC family S96127_0467 PF06276 Ferric iron reductase FhuF-like transporter S96127_0468 PF06276 Ferric iron reductase FhuF-like transporter S96127_0468 PF04183 IucA / IucC family S96127_0473 PF03472 Autoinducer binding domain S96127_0473 PF00196 Bacterial regulatory proteins, luxR family S96127_0474 PF00765 Autoinducer synthase S96127_0475 PF02517 CPBP intramembrane metalloprotease S96127_0477 PF12759 InsA C-terminal domain S96127_0477 PF03811 InsA N-terminal domain S96127_0481 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath S96127_0484 PF00691 OmpA family S96127_0484 PF05736 OprF membrane domain S96127_0486 PF10431 C-terminal, D2-small domain, of ClpB protein S96127_0486 PF17871 AAA lid domain S96127_0486 PF00004 ATPase family associated with various cellular activities (AAA) S96127_0486 PF07724 AAA domain (Cdc48 subfamily) S96127_0487 PF04717 Type VI secretion system, phage-baseplate injector S96127_0487 PF13296 Putative type VI secretion system Rhs element Vgr S96127_0487 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) S96127_0492 PF03811 InsA N-terminal domain S96127_0492 PF12759 InsA C-terminal domain S96127_0496 PF03811 InsA N-terminal domain S96127_0496 PF12759 InsA C-terminal domain S96127_0497 PF03400 IS1 transposase S96127_0500 PF01276 Orn/Lys/Arg decarboxylase, major domain S96127_0500 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain S96127_0500 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain S96127_0501 PF13407 Periplasmic binding protein domain S96127_0502 PF00005 ABC transporter S96127_0503 PF02653 Branched-chain amino acid transport system / permease component S96127_0504 PF07715 TonB-dependent Receptor Plug Domain S96127_0506 PF01464 Transglycosylase SLT domain S96127_0506 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain S96127_0507 PF04362 Bacterial Fe(2+) trafficking S96127_0508 PF14815 NUDIX domain S96127_0508 PF00730 HhH-GPD superfamily base excision DNA repair protein S96127_0508 PF00633 Helix-hairpin-helix motif S96127_0508 PF10576 Iron-sulfur binding domain of endonuclease III S96127_0509 PF02390 Putative methyltransferase S96127_0510 PF04320 Protein with unknown function (DUF469) S96127_0511 PF04960 Glutaminase S96127_0512 PF11101 Protein of unknown function (DUF2884) S96127_0513 PF11101 Protein of unknown function (DUF2884) S96127_0514 PF16671 Actin cross-linking domain S96127_0514 PF12146 Serine aminopeptidase, S33 S96127_0514 PF11647 Membrane Localization Domain S96127_0514 PF11713 Peptidase C80 family S96127_0514 PF07634 RtxA repeat S96127_0515 PF04055 Radical SAM superfamily S96127_0515 PF06969 HemN C-terminal domain S96127_0516 PF01725 Ham1 family S96127_0517 PF02594 Uncharacterised ACR, YggU family COG1872 S96127_0518 PF02325 YGGT family S96127_0519 PF03807 NADP oxidoreductase coenzyme F420-dependent S96127_0519 PF14748 Pyrroline-5-carboxylate reductase dimerisation S96127_0520 PF01168 Alanine racemase, N-terminal domain S96127_0521 PF00437 Type II/IV secretion system protein S96127_0522 PF04371 Porphyromonas-type peptidyl-arginine deiminase S96127_0523 PF00795 Carbon-nitrogen hydrolase S96127_0524 PF03652 Holliday junction resolvase S96127_0525 PF02622 Uncharacterized ACR, COG1678 S96127_0526 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain S96127_0526 PF02951 Prokaryotic glutathione synthetase, N-terminal domain S96127_0527 PF04452 RNA methyltransferase S96127_0529 PF04231 Endonuclease I S96127_0530 PF10263 SprT-like family S96127_0530 PF17283 SprT-like zinc ribbon domain S96127_0532 PF02773 S-adenosylmethionine synthetase, C-terminal domain S96127_0532 PF02772 S-adenosylmethionine synthetase, central domain S96127_0532 PF00438 S-adenosylmethionine synthetase, N-terminal domain S96127_0534 PF17944 Arginine decarboxylase C-terminal helical extension S96127_0534 PF17810 Arginine decarboxylase helical bundle domain S96127_0534 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain S96127_0535 PF00355 Rieske [2Fe-2S] domain S96127_0536 PF01435 Peptidase family M48 S96127_0537 PF00456 Transketolase, thiamine diphosphate binding domain S96127_0537 PF02779 Transketolase, pyrimidine binding domain S96127_0537 PF02780 Transketolase, C-terminal domain S96127_0540 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain S96127_0540 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain S96127_0541 PF00162 Phosphoglycerate kinase S96127_0542 PF01116 Fructose-bisphosphate aldolase class-II S96127_0544 PF00924 Mechanosensitive ion channel S96127_0544 PF05552 Conserved TM helix S96127_0545 PF01810 LysE type translocator S96127_0546 PF04402 Protein of unknown function (DUF541) S96127_0547 PF03466 LysR substrate binding domain S96127_0547 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_0548 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) S96127_0549 PF01842 ACT domain S96127_0549 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain S96127_0549 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain S96127_0550 PF01812 5-formyltetrahydrofolate cyclo-ligase family S96127_0551 PF05164 Cell division protein ZapA S96127_0552 PF03695 Uncharacterised protein family (UPF0149) S96127_0553 PF00557 Metallopeptidase family M24 S96127_0553 PF05195 Aminopeptidase P, N-terminal domain S96127_0554 PF01494 FAD binding domain S96127_0555 PF01494 FAD binding domain S96127_0556 PF01571 Aminomethyltransferase folate-binding domain S96127_0556 PF08669 Glycine cleavage T-protein C-terminal barrel domain S96127_0557 PF01597 Glycine cleavage H-protein S96127_0558 PF02347 Glycine cleavage system P-protein S96127_0562 PF05662 Coiled stalk of trimeric autotransporter adhesin S96127_0562 PF05658 Head domain of trimeric autotransporter adhesin S96127_0562 PF03895 YadA-like membrane anchor domain S96127_0562 PF13018 Extended Signal Peptide of Type V secretion system S96127_0564 PF03006 Haemolysin-III related S96127_0566 PF01571 Aminomethyltransferase folate-binding domain S96127_0567 PF03937 Flavinator of succinate dehydrogenase S96127_0568 PF07254 Membrane-bound toxin component of toxin-antitoxin system S96127_0569 PF00486 Transcriptional regulatory protein, C terminal S96127_0569 PF00072 Response regulator receiver domain S96127_0570 PF00672 HAMP domain S96127_0570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_0570 PF00512 His Kinase A (phospho-acceptor) domain S96127_0571 PF06123 Inner membrane protein CreD S96127_0572 PF00258 Flavodoxin S96127_0573 PF02899 Phage integrase, N-terminal SAM-like domain S96127_0573 PF00589 Phage integrase family S96127_0574 PF10411 Disulfide bond isomerase protein N-terminus S96127_0574 PF13098 Thioredoxin-like domain S96127_0575 PF17768 RecJ OB domain S96127_0575 PF02272 DHHA1 domain S96127_0575 PF01368 DHH family S96127_0576 PF00472 RF-1 domain S96127_0576 PF03462 PCRF domain S96127_0577 PF00152 tRNA synthetases class II (D, K and N) S96127_0577 PF01336 OB-fold nucleic acid binding domain S96127_0578 PF00589 Phage integrase family S96127_0578 PF13356 Arm DNA-binding domain S96127_0578 PF14659 Phage integrase, N-terminal SAM-like domain S96127_0583 PF15723 Motility quorum-sensing regulator, toxin of MqsA S96127_0584 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA S96127_0602 PF03551 Transcriptional regulator PadR-like family S96127_0603 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family S96127_0605 PF13407 Periplasmic binding protein domain S96127_0606 PF02653 Branched-chain amino acid transport system / permease component S96127_0607 PF00005 ABC transporter S96127_0608 PF00005 ABC transporter S96127_0609 PF00005 ABC transporter S96127_0609 PF17912 MalK OB fold domain S96127_0610 PF13416 Bacterial extracellular solute-binding protein S96127_0611 PF00528 Binding-protein-dependent transport system inner membrane component S96127_0612 PF00528 Binding-protein-dependent transport system inner membrane component S96127_0613 PF07745 Glycosyl hydrolase family 53 S96127_0614 PF02449 Beta-galactosidase S96127_0614 PF08532 Beta-galactosidase trimerisation domain S96127_0614 PF08533 Beta-galactosidase C-terminal domain S96127_0615 PF02378 Phosphotransferase system, EIIC S96127_0615 PF00367 phosphotransferase system, EIIB S96127_0616 PF02264 LamB porin S96127_0617 PF00356 Bacterial regulatory proteins, lacI family S96127_0618 PF01055 Glycosyl hydrolases family 31 S96127_0618 PF13802 Galactose mutarotase-like S96127_0618 PF17137 Domain of unknown function (DUF5110) S96127_0618 PF16338 Domain of unknown function (DUF4968) S96127_0619 PF07690 Major Facilitator Superfamily S96127_0620 PF00356 Bacterial regulatory proteins, lacI family S96127_0622 PF01116 Fructose-bisphosphate aldolase class-II S96127_0624 PF00884 Sulfatase S96127_0625 PF04055 Radical SAM superfamily S96127_0625 PF13186 Iron-sulfur cluster-binding domain S96127_0626 PF07470 Glycosyl Hydrolase Family 88 S96127_0628 PF01979 Amidohydrolase family S96127_0629 PF03610 PTS system fructose IIA component S96127_0630 PF03613 PTS system mannose/fructose/sorbose family IID component S96127_0631 PF03609 PTS system sorbose-specific iic component S96127_0632 PF03830 PTS system sorbose subfamily IIB component S96127_0633 PF01380 SIS domain S96127_0634 PF08013 Tagatose 6 phosphate kinase S96127_0635 PF00455 DeoR C terminal sensor domain S96127_0635 PF08220 DeoR-like helix-turn-helix domain S96127_0636 PF00884 Sulfatase S96127_0637 PF01797 Transposase IS200 like S96127_0638 PF00665 Integrase core domain S96127_0638 PF02796 Helix-turn-helix domain of resolvase S96127_0639 PF01695 IstB-like ATP binding protein S96127_0641 PF09092 Lyase, N terminal S96127_0641 PF02278 Polysaccharide lyase family 8, super-sandwich domain S96127_0641 PF09093 Lyase, catalytic S96127_0641 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain S96127_0645 PF00484 Carbonic anhydrase S96127_0648 PF03958 Bacterial type II/III secretion system short domain S96127_0648 PF00263 Bacterial type II and III secretion system protein S96127_0649 PF00437 Type II/IV secretion system protein S96127_0651 PF00482 Type II secretion system (T2SS), protein F S96127_0652 PF07963 Prokaryotic N-terminal methylation motif S96127_0652 PF08334 Type II secretion system (T2SS), protein G S96127_0655 PF11612 Type II secretion system (T2SS), protein J S96127_0655 PF07963 Prokaryotic N-terminal methylation motif S96127_0659 PF01478 Type IV leader peptidase family S96127_0659 PF06750 Bacterial Peptidase A24 N-terminal domain S96127_0663 PF02203 Tar ligand binding domain homologue S96127_0663 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S96127_0663 PF00672 HAMP domain S96127_0666 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_0666 PF03466 LysR substrate binding domain S96127_0667 PF07690 Major Facilitator Superfamily S96127_0668 PF03466 LysR substrate binding domain S96127_0668 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_0669 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain S96127_0669 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain S96127_0670 PF00356 Bacterial regulatory proteins, lacI family S96127_0671 PF01568 Molydopterin dinucleotide binding domain S96127_0671 PF00384 Molybdopterin oxidoreductase S96127_0672 PF01553 Acyltransferase S96127_0672 PF00501 AMP-binding enzyme S96127_0672 PF13193 AMP-binding enzyme C-terminal domain S96127_0673 PF01553 Acyltransferase S96127_0673 PF13193 AMP-binding enzyme C-terminal domain S96127_0673 PF00501 AMP-binding enzyme S96127_0674 PF07690 Major Facilitator Superfamily S96127_0677 PF00248 Aldo/keto reductase family S96127_0678 PF02976 DNA mismatch repair enzyme MutH S96127_0679 PF00293 NUDIX domain S96127_0680 PF05524 PEP-utilising enzyme, N-terminal S96127_0680 PF00391 PEP-utilising enzyme, mobile domain S96127_0680 PF02896 PEP-utilising enzyme, TIM barrel domain S96127_0680 PF01590 GAF domain S96127_0681 PF01790 Prolipoprotein diacylglyceryl transferase S96127_0682 PF00303 Thymidylate synthase S96127_0687 PF17946 RecC C-terminal domain S96127_0688 PF16187 Middle or third domain of peptidase_M16 S96127_0688 PF05193 Peptidase M16 inactive domain S96127_0688 PF00675 Insulinase (Peptidase family M16) S96127_0689 PF00580 UvrD/REP helicase N-terminal domain S96127_0689 PF12705 PD-(D/E)XK nuclease superfamily S96127_0689 PF13361 UvrD-like helicase C-terminal domain S96127_0690 PF13538 UvrD-like helicase C-terminal domain S96127_0691 PF00583 Acetyltransferase (GNAT) family S96127_0691 PF00696 Amino acid kinase family S96127_0692 PF01520 N-acetylmuramoyl-L-alanine amidase S96127_0692 PF11741 AMIN domain S96127_0693 PF06725 3D domain S96127_0693 PF03562 MltA specific insert domain S96127_0694 PF00899 ThiF family S96127_0695 PF02657 Fe-S metabolism associated domain S96127_0696 PF00266 Aminotransferase class-V S96127_0698 PF03466 LysR substrate binding domain S96127_0698 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_0700 PF04241 Protein of unknown function (DUF423) S96127_0701 PF01728 FtsJ-like methyltransferase S96127_0701 PF18125 RlmM ferredoxin-like domain S96127_0702 PF01367 5'-3' exonuclease, C-terminal SAM fold S96127_0702 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain S96127_0703 PF11892 Domain of unknown function (DUF3412) S96127_0703 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases S96127_0703 PF03641 Possible lysine decarboxylase S96127_0704 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term S96127_0704 PF14489 QueF-like protein S96127_0705 PF07348 Syd protein (SUKH-2) S96127_0708 PF01797 Transposase IS200 like S96127_0709 PF04287 tRNA pseudouridine synthase C S96127_0710 PF00849 RNA pseudouridylate synthase S96127_0711 PF00258 Flavodoxin S96127_0712 PF11944 Protein of unknown function (DUF3461) S96127_0715 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal S96127_0715 PF14602 Hexapeptide repeat of succinyl-transferase S96127_0715 PF00132 Bacterial transferase hexapeptide (six repeats) S96127_0716 PF01909 Nucleotidyltransferase domain S96127_0716 PF01842 ACT domain S96127_0716 PF08335 GlnD PII-uridylyltransferase S96127_0716 PF01966 HD domain S96127_0717 PF00557 Metallopeptidase family M24 S96127_0718 PF00318 Ribosomal protein S2 S96127_0719 PF00889 Elongation factor TS S96127_0720 PF00696 Amino acid kinase family S96127_0721 PF01765 Ribosome recycling factor S96127_0722 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain S96127_0722 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase S96127_0722 PF13288 DXP reductoisomerase C-terminal domain S96127_0723 PF01255 Putative undecaprenyl diphosphate synthase S96127_0725 PF17820 PDZ domain S96127_0725 PF02163 Peptidase family M50 S96127_0726 PF01103 Surface antigen S96127_0726 PF07244 Surface antigen variable number repeat S96127_0727 PF03938 Outer membrane protein (OmpH-like) S96127_0728 PF00132 Bacterial transferase hexapeptide (six repeats) S96127_0728 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD S96127_0729 PF07977 FabA-like domain S96127_0730 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 S96127_0730 PF00132 Bacterial transferase hexapeptide (six repeats) S96127_0731 PF02684 Lipid-A-disaccharide synthetase S96127_0732 PF01351 Ribonuclease HII S96127_0733 PF17657 Bacterial DNA polymerase III alpha subunit finger domain S96127_0733 PF07733 Bacterial DNA polymerase III alpha NTPase domain S96127_0733 PF02811 PHP domain S96127_0733 PF01336 OB-fold nucleic acid binding domain S96127_0733 PF14579 Helix-hairpin-helix motif S96127_0734 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit S96127_0735 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily S96127_0736 PF01171 PP-loop family S96127_0736 PF11734 TilS substrate C-terminal domain S96127_0736 PF09179 TilS substrate binding domain S96127_0737 PF00034 Cytochrome c S96127_0738 PF07073 Modulator of Rho-dependent transcription termination (ROF) S96127_0739 PF06786 Uncharacterised protein family (UPF0253) S96127_0740 PF07152 YaeQ protein S96127_0741 PF00472 RF-1 domain S96127_0742 PF17185 NlpE C-terminal OB domain S96127_0742 PF04170 NlpE N-terminal domain S96127_0743 PF04073 Aminoacyl-tRNA editing domain S96127_0743 PF03129 Anticodon binding domain S96127_0743 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) S96127_0744 PF18389 TrmO C-terminal domain S96127_0744 PF01980 tRNA-methyltransferase O S96127_0745 PF16358 RcsF lipoprotein S96127_0746 PF03180 NLPA lipoprotein S96127_0747 PF00528 Binding-protein-dependent transport system inner membrane component S96127_0748 PF00005 ABC transporter S96127_0748 PF09383 NIL domain S96127_0751 PF00248 Aldo/keto reductase family S96127_0753 PF03372 Endonuclease/Exonuclease/phosphatase family S96127_0754 PF01464 Transglycosylase SLT domain S96127_0754 PF01476 LysM domain S96127_0755 PF16123 Hydroxyacylglutathione hydrolase C-terminus S96127_0755 PF00753 Metallo-beta-lactamase superfamily S96127_0756 PF08241 Methyltransferase domain S96127_0757 PF00075 RNase H S96127_0758 PF00929 Exonuclease S96127_0759 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin S96127_0762 PF01695 IstB-like ATP binding protein S96127_0763 PF00665 Integrase core domain S96127_0763 PF02796 Helix-turn-helix domain of resolvase S96127_0765 PF05973 Phage derived protein Gp49-like (DUF891) S96127_0777 PF13356 Arm DNA-binding domain S96127_0777 PF00589 Phage integrase family S96127_0780 PF01668 SmpB protein S96127_0781 PF03364 Polyketide cyclase / dehydrase and lipid transport S96127_0782 PF03658 RnfH family Ubiquitin S96127_0783 PF04355 SmpA / OmlA family S96127_0784 PF02463 RecF/RecN/SMC N terminal domain S96127_0785 PF01513 ATP-NAD kinase S96127_0786 PF01025 GrpE S96127_0787 PF00285 Citrate synthase, C-terminal domain S96127_0788 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit S96127_0789 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit S96127_0790 PF02910 Fumarate reductase flavoprotein C-term S96127_0790 PF00890 FAD binding domain S96127_0791 PF13085 2Fe-2S iron-sulfur cluster binding domain S96127_0792 PF02779 Transketolase, pyrimidine binding domain S96127_0792 PF16870 2-oxoglutarate dehydrogenase C-terminal S96127_0792 PF00676 Dehydrogenase E1 component S96127_0792 PF16078 2-oxoglutarate dehydrogenase N-terminus S96127_0793 PF02817 e3 binding domain S96127_0793 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) S96127_0793 PF00364 Biotin-requiring enzyme S96127_0794 PF08442 ATP-grasp domain S96127_0794 PF00549 CoA-ligase S96127_0795 PF00549 CoA-ligase S96127_0795 PF02629 CoA binding domain S96127_0796 PF01654 Cytochrome bd terminal oxidase subunit I S96127_0797 PF02322 Cytochrome bd terminal oxidase subunit II S96127_0798 PF08173 Membrane bound YbgT-like protein S96127_0799 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) S96127_0800 PF03061 Thioesterase superfamily S96127_0801 PF01618 MotA/TolQ/ExbB proton channel family S96127_0802 PF02472 Biopolymer transport protein ExbD/TolR S96127_0803 PF06519 TolA C-terminal S96127_0803 PF06519 TolA C-terminal S96127_0804 PF04052 TolB amino-terminal domain S96127_0804 PF07676 WD40-like Beta Propeller Repeat S96127_0805 PF00691 OmpA family S96127_0806 PF16331 TolA binding protein trimerisation S96127_0806 PF13174 Tetratricopeptide repeat S96127_0808 PF02445 Quinolinate synthetase A protein S96127_0809 PF04973 Nicotinamide mononucleotide transporter S96127_0810 PF01545 Cation efflux family S96127_0811 PF00793 DAHP synthetase I family S96127_0812 PF00300 Histidine phosphatase superfamily (branch 1) S96127_0814 PF01263 Aldose 1-epimerase S96127_0816 PF08544 GHMP kinases C terminal S96127_0816 PF10509 Galactokinase galactose-binding signature S96127_0816 PF00288 GHMP kinases N terminal domain S96127_0817 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain S96127_0817 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain S96127_0818 PF16363 GDP-mannose 4,6 dehydratase S96127_0821 PF00005 ABC transporter S96127_0822 PF03459 TOBE domain S96127_0822 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_0823 PF10766 Multidrug efflux pump-associated protein AcrZ S96127_0825 PF00528 Binding-protein-dependent transport system inner membrane component S96127_0826 PF00005 ABC transporter S96127_0826 PF03459 TOBE domain S96127_0828 PF10282 Lactonase, 7-bladed beta-propeller S96127_0829 PF00202 Aminotransferase class-III S96127_0830 PF04055 Radical SAM superfamily S96127_0830 PF06968 Biotin and Thiamin Synthesis associated domain S96127_0831 PF00155 Aminotransferase class I and II S96127_0832 PF08241 Methyltransferase domain S96127_0834 PF09383 NIL domain S96127_0834 PF00005 ABC transporter S96127_0837 PF04851 Type III restriction enzyme, res subunit S96127_0837 PF02151 UvrB/uvrC motif S96127_0837 PF12344 Ultra-violet resistance protein B S96127_0837 PF17757 UvrB interaction domain S96127_0837 PF00271 Helicase conserved C-terminal domain S96127_0838 PF09905 DNA-binding protein VF530 S96127_0839 PF01933 Uncharacterised protein family UPF0052 S96127_0841 PF04055 Radical SAM superfamily S96127_0841 PF06463 Molybdenum Cofactor Synthesis C S96127_0842 PF01967 MoaC family S96127_0843 PF02597 ThiS family S96127_0844 PF02391 MoaE protein S96127_0845 PF01027 Inhibitor of apoptosis-promoting Bax1 S96127_0847 PF01797 Transposase IS200 like S96127_0848 PF05199 GMC oxidoreductase S96127_0848 PF00732 GMC oxidoreductase S96127_0849 PF00171 Aldehyde dehydrogenase family S96127_0850 PF00440 Bacterial regulatory proteins, tetR family S96127_0850 PF13977 BetI-type transcriptional repressor, C-terminal S96127_0851 PF02028 BCCT, betaine/carnitine/choline family transporter S96127_0852 PF03466 LysR substrate binding domain S96127_0852 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_0854 PF01048 Phosphorylase superfamily S96127_0855 PF03825 Nucleoside H+ symporter S96127_0857 PF03825 Nucleoside H+ symporter S96127_0858 PF13801 Heavy-metal resistance S96127_0859 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_0859 PF00512 His Kinase A (phospho-acceptor) domain S96127_0860 PF02954 Bacterial regulatory protein, Fis family S96127_0860 PF00072 Response regulator receiver domain S96127_0860 PF00158 Sigma-54 interaction domain S96127_0861 PF00724 NADH:flavin oxidoreductase / NADH oxidase family S96127_0862 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_0862 PF03466 LysR substrate binding domain S96127_0868 PF00005 ABC transporter S96127_0869 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S96127_0870 PF09209 Tetracyclin repressor-like, C-terminal domain S96127_0870 PF00440 Bacterial regulatory proteins, tetR family S96127_0871 PF00270 DEAD/DEAH box helicase S96127_0871 PF00271 Helicase conserved C-terminal domain S96127_0873 PF13358 DDE superfamily endonuclease S96127_0873 PF13592 Winged helix-turn helix S96127_0874 PF13358 DDE superfamily endonuclease S96127_0874 PF13592 Winged helix-turn helix S96127_0880 PF00872 Transposase, Mutator family S96127_0881 PF01548 Transposase S96127_0881 PF02371 Transposase IS116/IS110/IS902 family S96127_0882 PF00271 Helicase conserved C-terminal domain S96127_0882 PF00270 DEAD/DEAH box helicase S96127_0886 PF01207 Dihydrouridine synthase (Dus) S96127_0888 PF00768 D-alanyl-D-alanine carboxypeptidase S96127_0889 PF09330 D-lactate dehydrogenase, membrane binding S96127_0889 PF01565 FAD binding domain S96127_0890 PF01928 CYTH domain S96127_0891 PF01844 HNH endonuclease S96127_0894 PF04226 Transglycosylase associated protein S96127_0895 PF00005 ABC transporter S96127_0897 PF00528 Binding-protein-dependent transport system inner membrane component S96127_0898 PF00528 Binding-protein-dependent transport system inner membrane component S96127_0899 PF07308 Protein of unknown function (DUF1456) S96127_0900 PF02954 Bacterial regulatory protein, Fis family S96127_0900 PF00158 Sigma-54 interaction domain S96127_0900 PF13188 PAS domain S96127_0901 PF02653 Branched-chain amino acid transport system / permease component S96127_0902 PF02653 Branched-chain amino acid transport system / permease component S96127_0903 PF00005 ABC transporter S96127_0904 PF00005 ABC transporter S96127_0907 PF00581 Rhodanese-like domain S96127_0908 PF04069 Substrate binding domain of ABC-type glycine betaine transport system S96127_0909 PF04069 Substrate binding domain of ABC-type glycine betaine transport system S96127_0910 PF00528 Binding-protein-dependent transport system inner membrane component S96127_0911 PF00005 ABC transporter S96127_0912 PF00528 Binding-protein-dependent transport system inner membrane component S96127_0913 PF13520 Amino acid permease S96127_0914 PF01276 Orn/Lys/Arg decarboxylase, major domain S96127_0914 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain S96127_0914 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain S96127_0916 PF00892 EamA-like transporter family S96127_0918 PF00267 Gram-negative porin S96127_0919 PF13307 Helicase C-terminal domain S96127_0919 PF06733 DEAD_2 S96127_0920 PF00199 Catalase S96127_0920 PF06628 Catalase-related immune-responsive S96127_0921 PF07437 YfaZ precursor S96127_0924 PF03222 Tryptophan/tyrosine permease family S96127_0925 PF00994 Probable molybdopterin binding domain S96127_0926 PF03974 Ecotin S96127_0927 PF00111 2Fe-2S iron-sulfur cluster binding domain S96127_0928 PF00268 Ribonucleotide reductase, small chain S96127_0929 PF02867 Ribonucleotide reductase, barrel domain S96127_0929 PF00317 Ribonucleotide reductase, all-alpha domain S96127_0929 PF03477 ATP cone domain S96127_0932 PF03989 DNA gyrase C-terminal domain, beta-propeller S96127_0932 PF00521 DNA gyrase/topoisomerase IV, subunit A S96127_0934 PF09456 RcsC Alpha-Beta-Loop (ABL) S96127_0934 PF00072 Response regulator receiver domain S96127_0934 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_0934 PF00512 His Kinase A (phospho-acceptor) domain S96127_0935 PF00072 Response regulator receiver domain S96127_0935 PF00196 Bacterial regulatory proteins, luxR family S96127_0936 PF01627 Hpt domain S96127_0936 PF16359 RcsD-ABL domain S96127_0936 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_0937 PF01627 Hpt domain S96127_0937 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_0937 PF16359 RcsD-ABL domain S96127_0938 PF07690 Major Facilitator Superfamily S96127_0940 PF00267 Gram-negative porin S96127_0943 PF00144 Beta-lactamase S96127_0946 PF12706 Beta-lactamase superfamily domain S96127_0947 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S96127_0947 PF00672 HAMP domain S96127_0947 PF02743 Cache domain S96127_0948 PF01278 Omptin family S96127_0949 PF06183 DinI-like family S96127_0950 PF00717 Peptidase S24-like S96127_0950 PF01381 Helix-turn-helix S96127_0951 PF06530 Phage antitermination protein Q S96127_0952 PF17042 Nucleotide-binding C-terminal domain S96127_0952 PF07005 Sugar-binding N-terminal domain S96127_0953 PF00596 Class II Aldolase and Adducin N-terminal domain S96127_0954 PF08220 DeoR-like helix-turn-helix domain S96127_0954 PF00455 DeoR C terminal sensor domain S96127_0955 PF01261 Xylose isomerase-like TIM barrel S96127_0959 PF17482 Phage tail sheath C-terminal domain S96127_0959 PF04984 Phage tail sheath protein subtilisin-like domain S96127_0967 PF04865 Baseplate J-like protein S96127_0970 PF07484 Phage Tail Collar Domain S96127_0971 PF01380 SIS domain S96127_0971 PF01418 Helix-turn-helix domain, rpiR family S96127_0972 PF00232 Glycosyl hydrolase family 1 S96127_0976 PF05638 Type VI secretion system effector, Hcp S96127_0978 PF11893 Domain of unknown function (DUF3413) S96127_0978 PF00884 Sulfatase S96127_0979 PF07208 Protein of unknown function (DUF1414) S96127_0980 PF04245 37-kD nucleoid-associated bacterial protein S96127_0982 PF01797 Transposase IS200 like S96127_0983 PF01386 Ribosomal L25p family S96127_0984 PF00271 Helicase conserved C-terminal domain S96127_0984 PF04851 Type III restriction enzyme, res subunit S96127_0985 PF01479 S4 domain S96127_0985 PF00849 RNA pseudouridylate synthase S96127_0986 PF07690 Major Facilitator Superfamily S96127_0988 PF13989 YejG-like protein S96127_0989 PF00005 ABC transporter S96127_0989 PF08352 Oligopeptide/dipeptide transporter, C-terminal region S96127_0990 PF12911 N-terminal TM domain of oligopeptide transport permease C S96127_0990 PF00528 Binding-protein-dependent transport system inner membrane component S96127_0991 PF00528 Binding-protein-dependent transport system inner membrane component S96127_0992 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle S96127_0993 PF12792 CSS motif domain associated with EAL S96127_0993 PF00563 EAL domain S96127_0996 PF00877 NlpC/P60 family S96127_0997 PF01569 PAP2 superfamily S96127_0998 PF02492 CobW/HypB/UreG, nucleotide-binding domain S96127_0998 PF07683 Cobalamin synthesis protein cobW C-terminal domain S96127_1000 PF07729 FCD domain S96127_1000 PF00392 Bacterial regulatory proteins, gntR family S96127_1001 PF08125 Mannitol dehydrogenase C-terminal domain S96127_1001 PF01232 Mannitol dehydrogenase Rossmann domain S96127_1002 PF03786 D-mannonate dehydratase (UxuA) S96127_1003 PF08207 Elongation factor P (EF-P) KOW-like domain S96127_1003 PF01132 Elongation factor P (EF-P) OB domain S96127_1003 PF09285 Elongation factor P, C-terminal S96127_1004 PF03222 Tryptophan/tyrosine permease family S96127_1005 PF03692 Putative zinc- or iron-chelating domain S96127_1007 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain S96127_1007 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain S96127_1007 PF01842 ACT domain S96127_1009 PF00171 Aldehyde dehydrogenase family S96127_1010 PF02782 FGGY family of carbohydrate kinases, C-terminal domain S96127_1010 PF00370 FGGY family of carbohydrate kinases, N-terminal domain S96127_1011 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) S96127_1013 PF00005 ABC transporter S96127_1014 PF02653 Branched-chain amino acid transport system / permease component S96127_1015 PF00293 NUDIX domain S96127_1016 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 S96127_1016 PF00381 PTS HPr component phosphorylation site S96127_1017 PF00294 pfkB family carbohydrate kinase S96127_1018 PF02378 Phosphotransferase system, EIIC S96127_1018 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit S96127_1019 PF00486 Transcriptional regulatory protein, C terminal S96127_1020 PF17550 Family of unknown function S96127_1022 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain S96127_1022 PF02753 Pili assembly chaperone PapD, C-terminal domain S96127_1023 PF13954 PapC N-terminal domain S96127_1023 PF13953 PapC C-terminal domain S96127_1023 PF00577 Outer membrane usher protein S96127_1024 PF01261 Xylose isomerase-like TIM barrel S96127_1025 PF03601 Conserved hypothetical protein 698 S96127_1027 PF03466 LysR substrate binding domain S96127_1027 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_1028 PF00324 Amino acid permease S96127_1030 PF01032 FecCD transport family S96127_1031 PF00005 ABC transporter S96127_1032 PF07715 TonB-dependent Receptor Plug Domain S96127_1032 PF00593 TonB dependent receptor S96127_1033 PF00043 Glutathione S-transferase, C-terminal domain S96127_1033 PF13417 Glutathione S-transferase, N-terminal domain S96127_1036 PF03180 NLPA lipoprotein S96127_1037 PF09383 NIL domain S96127_1037 PF00005 ABC transporter S96127_1038 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1039 PF00768 D-alanyl-D-alanine carboxypeptidase S96127_1039 PF07943 Penicillin-binding protein 5, C-terminal domain S96127_1043 PF08220 DeoR-like helix-turn-helix domain S96127_1043 PF00455 DeoR C terminal sensor domain S96127_1044 PF01791 DeoC/LacD family aldolase S96127_1045 PF01569 PAP2 superfamily S96127_1047 PF06826 Predicted Permease Membrane Region S96127_1047 PF02080 TrkA-C domain S96127_1048 PF00462 Glutaredoxin S96127_1049 PF07214 Protein of unknown function (DUF1418) S96127_1050 PF10722 Putative bacterial sensory transduction regulator S96127_1051 PF13416 Bacterial extracellular solute-binding protein S96127_1052 PF00005 ABC transporter S96127_1052 PF08402 TOBE domain S96127_1053 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1054 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1055 PF10767 Protein of unknown function (DUF2593) S96127_1056 PF05958 tRNA (Uracil-5-)-methyltransferase S96127_1057 PF00497 Bacterial extracellular solute-binding proteins, family 3 S96127_1064 PF01032 FecCD transport family S96127_1065 PF01032 FecCD transport family S96127_1066 PF00005 ABC transporter S96127_1067 PF03059 Nicotianamine synthase protein S96127_1068 PF10100 Staphylopine dehydrogenase S96127_1069 PF00892 EamA-like transporter family S96127_1071 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1072 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1073 PF00497 Bacterial extracellular solute-binding proteins, family 3 S96127_1074 PF00005 ABC transporter S96127_1076 PF01817 Chorismate mutase type II S96127_1077 PF12883 Protein of unknown function (DUF3828) S96127_1078 PF01370 NAD dependent epimerase/dehydratase family S96127_1079 PF11066 Protein of unknown function (DUF2867) S96127_1079 PF13460 NAD(P)H-binding S96127_1080 PF01212 Beta-eliminating lyase S96127_1081 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain S96127_1081 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain S96127_1081 PF00205 Thiamine pyrophosphate enzyme, central domain S96127_1082 PF00175 Oxidoreductase NAD-binding domain S96127_1082 PF00111 2Fe-2S iron-sulfur cluster binding domain S96127_1082 PF00970 Oxidoreductase FAD-binding domain S96127_1083 PF03063 Prismane/CO dehydrogenase family S96127_1084 PF03956 Lysine exporter LysO S96127_1085 PF11398 Protein of unknown function (DUF2813) S96127_1086 PF04393 Protein of unknown function (DUF535) S96127_1088 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S96127_1089 PF02687 FtsX-like permease family S96127_1089 PF12704 MacB-like periplasmic core domain S96127_1089 PF00005 ABC transporter S96127_1090 PF00313 'Cold-shock' DNA-binding domain S96127_1091 PF02617 ATP-dependent Clp protease adaptor protein ClpS S96127_1092 PF17871 AAA lid domain S96127_1092 PF10431 C-terminal, D2-small domain, of ClpB protein S96127_1092 PF00004 ATPase family associated with various cellular activities (AAA) S96127_1092 PF07724 AAA domain (Cdc48 subfamily) S96127_1092 PF02861 Clp amino terminal domain, pathogenicity island component S96127_1095 PF01176 Translation initiation factor 1A / IF-1 S96127_1096 PF03588 Leucyl/phenylalanyl-tRNA protein transferase S96127_1097 PF00664 ABC transporter transmembrane region S96127_1097 PF00005 ABC transporter S96127_1098 PF00664 ABC transporter transmembrane region S96127_1098 PF00005 ABC transporter S96127_1100 PF07992 Pyridine nucleotide-disulphide oxidoreductase S96127_1101 PF01037 Lrp/AsnC ligand binding domain S96127_1102 PF13491 4TM region of DNA translocase FtsK/SpoIIIE S96127_1102 PF17854 FtsK alpha domain S96127_1102 PF09397 Ftsk gamma domain S96127_1102 PF01580 FtsK/SpoIIIE family S96127_1103 PF03548 Outer membrane lipoprotein carrier protein LolA S96127_1104 PF16193 AAA C-terminal domain S96127_1104 PF12002 MgsA AAA+ ATPase C terminal S96127_1104 PF00004 ATPase family associated with various cellular activities (AAA) S96127_1105 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) S96127_1105 PF02403 Seryl-tRNA synthetase N-terminal domain S96127_1106 PF07690 Major Facilitator Superfamily S96127_1107 PF01695 IstB-like ATP binding protein S96127_1108 PF02796 Helix-turn-helix domain of resolvase S96127_1108 PF00665 Integrase core domain S96127_1109 PF07690 Major Facilitator Superfamily S96127_1110 PF04055 Radical SAM superfamily S96127_1112 PF02901 Pyruvate formate lyase-like S96127_1112 PF01228 Glycine radical S96127_1113 PF01226 Formate/nitrite transporter S96127_1114 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding S96127_1114 PF18381 YcaO cyclodehydratase C-terminal domain S96127_1115 PF17763 Glutaminase/Asparaginase C-terminal domain S96127_1115 PF00710 Asparaginase, N-terminal S96127_1116 PF05662 Coiled stalk of trimeric autotransporter adhesin S96127_1116 PF05662 Coiled stalk of trimeric autotransporter adhesin S96127_1116 PF05658 Head domain of trimeric autotransporter adhesin S96127_1116 PF03895 YadA-like membrane anchor domain S96127_1116 PF13018 Extended Signal Peptide of Type V secretion system S96127_1116 PF05658 Head domain of trimeric autotransporter adhesin S96127_1116 PF13018 Extended Signal Peptide of Type V secretion system S96127_1116 PF03895 YadA-like membrane anchor domain S96127_1118 PF00266 Aminotransferase class-V S96127_1119 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) S96127_1120 PF02224 Cytidylate kinase S96127_1121 PF00575 S1 RNA binding domain S96127_1122 PF00216 Bacterial DNA-binding protein S96127_1124 PF03772 Competence protein S96127_1124 PF00753 Metallo-beta-lactamase superfamily S96127_1125 PF00664 ABC transporter transmembrane region S96127_1125 PF00005 ABC transporter S96127_1126 PF02606 Tetraacyldisaccharide-1-P 4'-kinase S96127_1127 PF07063 Domain of unknown function (DUF1338) S96127_1129 PF00313 'Cold-shock' DNA-binding domain S96127_1130 PF03966 Trm112p-like protein S96127_1131 PF02348 Cytidylyltransferase S96127_1133 PF01636 Phosphotransferase enzyme family S96127_1135 PF13847 Methyltransferase domain S96127_1136 PF17192 MukF middle domain S96127_1136 PF03882 MukF winged-helix domain S96127_1136 PF17193 MukF C-terminal domain S96127_1137 PF04288 MukE-like family S96127_1138 PF04310 MukB N-terminal S96127_1138 PF16330 MukB hinge domain S96127_1142 PF03734 L,D-transpeptidase catalytic domain S96127_1142 PF01471 Putative peptidoglycan binding domain S96127_1143 PF05951 Bacterial protein of unknown function (DUF882) S96127_1144 PF00753 Metallo-beta-lactamase superfamily S96127_1145 PF00155 Aminotransferase class I and II S96127_1146 PF00267 Gram-negative porin S96127_1147 PF00152 tRNA synthetases class II (D, K and N) S96127_1147 PF01336 OB-fold nucleic acid binding domain S96127_1148 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family S96127_1148 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain S96127_1149 PF01433 Peptidase family M1 domain S96127_1149 PF17432 Domain of unknown function (DUF3458_C) ARM repeats S96127_1149 PF11940 Domain of unknown function (DUF3458) Ig-like fold S96127_1150 PF01180 Dihydroorotate dehydrogenase S96127_1151 PF07126 Cell-division protein ZapC S96127_1152 PF03473 MOSC domain S96127_1152 PF00111 2Fe-2S iron-sulfur cluster binding domain S96127_1152 PF03476 MOSC N-terminal beta barrel domain S96127_1153 PF10672 S-adenosylmethionine-dependent methyltransferase S96127_1153 PF02926 THUMP domain S96127_1153 PF01170 Putative RNA methylase family UPF0020 S96127_1154 PF00005 ABC transporter S96127_1154 PF16326 ABC transporter C-terminal domain S96127_1154 PF12848 ABC transporter S96127_1155 PF04403 Paraquat-inducible protein A S96127_1156 PF02470 MlaD protein S96127_1157 PF03886 ABC-type transport auxiliary lipoprotein component S96127_1158 PF03886 ABC-type transport auxiliary lipoprotein component S96127_1160 PF01797 Transposase IS200 like S96127_1161 PF00109 Beta-ketoacyl synthase, N-terminal domain S96127_1161 PF02801 Beta-ketoacyl synthase, C-terminal domain S96127_1162 PF01695 IstB-like ATP binding protein S96127_1163 PF00665 Integrase core domain S96127_1163 PF02796 Helix-turn-helix domain of resolvase S96127_1164 PF02801 Beta-ketoacyl synthase, C-terminal domain S96127_1164 PF00109 Beta-ketoacyl synthase, N-terminal domain S96127_1166 PF07977 FabA-like domain S96127_1167 PF05362 Lon protease (S16) C-terminal proteolytic domain S96127_1167 PF13654 AAA domain S96127_1168 PF06303 MatP N-terminal domain S96127_1168 PF17414 MatP C-terminal ribbon-helix-helix domain S96127_1169 PF01797 Transposase IS200 like S96127_1171 PF01389 OmpA-like transmembrane domain S96127_1171 PF00691 OmpA family S96127_1172 PF03846 Cell division inhibitor SulA S96127_1173 PF04993 TfoX N-terminal domain S96127_1173 PF04994 TfoX C-terminal domain S96127_1174 PF12805 FUSC-like inner membrane protein yccS S96127_1175 PF03733 Inner membrane component domain S96127_1176 PF12462 DNA helicase IV / RNA helicase N terminal S96127_1176 PF13361 UvrD-like helicase C-terminal domain S96127_1176 PF00580 UvrD/REP helicase N-terminal domain S96127_1177 PF02142 MGS-like domain S96127_1178 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) S96127_1179 PF13380 CoA binding domain S96127_1180 PF08755 Hemimethylated DNA-binding protein YccV like S96127_1181 PF17785 PUA-like domain S96127_1181 PF10672 S-adenosylmethionine-dependent methyltransferase S96127_1182 PF00708 Acylphosphatase S96127_1183 PF04358 DsrC like protein S96127_1185 PF13610 DDE domain S96127_1189 PF08031 Berberine and berberine like S96127_1189 PF01565 FAD binding domain S96127_1192 PF07977 FabA-like domain S96127_1193 PF00109 Beta-ketoacyl synthase, N-terminal domain S96127_1193 PF02801 Beta-ketoacyl synthase, C-terminal domain S96127_1195 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal S96127_1195 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal S96127_1197 PF00378 Enoyl-CoA hydratase/isomerase S96127_1200 PF00550 Phosphopantetheine attachment site S96127_1201 PF00698 Acyl transferase domain S96127_1203 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath S96127_1206 PF05736 OprF membrane domain S96127_1206 PF00691 OmpA family S96127_1208 PF07724 AAA domain (Cdc48 subfamily) S96127_1208 PF17871 AAA lid domain S96127_1208 PF10431 C-terminal, D2-small domain, of ClpB protein S96127_1208 PF00004 ATPase family associated with various cellular activities (AAA) S96127_1209 PF13296 Putative type VI secretion system Rhs element Vgr S96127_1209 PF04717 Type VI secretion system, phage-baseplate injector S96127_1209 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) S96127_1218 PF13358 DDE superfamily endonuclease S96127_1218 PF13592 Winged helix-turn helix S96127_1231 PF00005 ABC transporter S96127_1231 PF12848 ABC transporter S96127_1233 PF00872 Transposase, Mutator family S96127_1234 PF00899 ThiF family S96127_1235 PF00994 Probable molybdopterin binding domain S96127_1235 PF03453 MoeA N-terminal region (domain I and II) S96127_1235 PF03454 MoeA C-terminal region (domain IV) S96127_1237 PF00005 ABC transporter S96127_1238 PF13533 Biotin-lipoyl like S96127_1241 PF00756 Putative esterase S96127_1242 PF08240 Alcohol dehydrogenase GroES-like domain S96127_1242 PF00107 Zinc-binding dehydrogenase S96127_1243 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_1243 PF03466 LysR substrate binding domain S96127_1244 PF06779 Uncharacterised MFS-type transporter YbfB S96127_1245 PF01227 GTP cyclohydrolase I S96127_1246 PF04235 Protein of unknown function (DUF418) S96127_1247 PF13407 Periplasmic binding protein domain S96127_1248 PF00005 ABC transporter S96127_1249 PF02653 Branched-chain amino acid transport system / permease component S96127_1250 PF02698 DUF218 domain S96127_1251 PF03949 Malic enzyme, NAD binding domain S96127_1251 PF00390 Malic enzyme, N-terminal domain S96127_1252 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region S96127_1252 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region S96127_1253 PF04172 LrgB-like family S96127_1254 PF03788 LrgA family S96127_1255 PF07690 Major Facilitator Superfamily S96127_1262 PF01797 Transposase IS200 like S96127_1263 PF09334 tRNA synthetases class I (M) S96127_1263 PF01588 Putative tRNA binding domain S96127_1264 PF10609 NUBPL iron-transfer P-loop NTPase S96127_1265 PF00485 Phosphoribulokinase / Uridine kinase family S96127_1266 PF00692 dUTPase S96127_1267 PF05170 AsmA family S96127_1268 PF03741 Integral membrane protein TerC family S96127_1268 PF03471 Transporter associated domain S96127_1268 PF00571 CBS domain S96127_1269 PF06276 Ferric iron reductase FhuF-like transporter S96127_1269 PF11575 FhuF 2Fe-2S C-terminal domain S96127_1270 PF00282 Pyridoxal-dependent decarboxylase conserved domain S96127_1271 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) S96127_1273 PF06276 Ferric iron reductase FhuF-like transporter S96127_1273 PF04183 IucA / IucC family S96127_1274 PF00005 ABC transporter S96127_1275 PF01032 FecCD transport family S96127_1276 PF01032 FecCD transport family S96127_1277 PF01497 Periplasmic binding protein S96127_1278 PF07660 Secretin and TonB N terminus short domain S96127_1278 PF07715 TonB-dependent Receptor Plug Domain S96127_1278 PF00593 TonB dependent receptor S96127_1279 PF04183 IucA / IucC family S96127_1279 PF06276 Ferric iron reductase FhuF-like transporter S96127_1280 PF00483 Nucleotidyl transferase S96127_1281 PF00483 Nucleotidyl transferase S96127_1282 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain S96127_1282 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase S96127_1283 PF01502 Phosphoribosyl-AMP cyclohydrolase S96127_1283 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase S96127_1284 PF00977 Histidine biosynthesis protein S96127_1285 PF00977 Histidine biosynthesis protein S96127_1286 PF00117 Glutamine amidotransferase class-I S96127_1287 PF00475 Imidazoleglycerol-phosphate dehydratase S96127_1288 PF00155 Aminotransferase class I and II S96127_1289 PF00815 Histidinol dehydrogenase S96127_1290 PF01634 ATP phosphoribosyltransferase S96127_1290 PF08029 HisG, C-terminal domain S96127_1292 PF01370 NAD dependent epimerase/dehydratase family S96127_1294 PF02653 Branched-chain amino acid transport system / permease component S96127_1295 PF00005 ABC transporter S96127_1296 PF00005 ABC transporter S96127_1297 PF00465 Iron-containing alcohol dehydrogenase S96127_1299 PF13520 Amino acid permease S96127_1300 PF00929 Exonuclease S96127_1300 PF08411 Exonuclease C-terminal S96127_1302 PF04363 Protein of unknown function (DUF496) S96127_1303 PF00872 Transposase, Mutator family S96127_1304 PF11924 Inverse autotransporter, beta-domain S96127_1304 PF02369 Bacterial Ig-like domain (group 1) S96127_1304 PF09134 Invasin, domain 3 S96127_1305 PF07690 Major Facilitator Superfamily S96127_1306 PF04134 Protein of unknown function, DUF393 S96127_1308 PF01557 Fumarylacetoacetate (FAA) hydrolase family S96127_1309 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain S96127_1309 PF13378 Enolase C-terminal domain-like S96127_1311 PF01070 FMN-dependent dehydrogenase S96127_1312 PF00764 Arginosuccinate synthase S96127_1313 PF01554 MatE S96127_1315 PF01522 Polysaccharide deacetylase S96127_1318 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) S96127_1319 PF00072 Response regulator receiver domain S96127_1319 PF00196 Bacterial regulatory proteins, luxR family S96127_1320 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component S96127_1322 PF03480 Bacterial extracellular solute-binding protein, family 7 S96127_1323 PF01648 4'-phosphopantetheinyl transferase superfamily S96127_1323 PF17837 4'-phosphopantetheinyl transferase N-terminal domain S96127_1326 PF16874 Glycosyl hydrolase family 36 C-terminal domain S96127_1326 PF16875 Glycosyl hydrolase family 36 N-terminal domain S96127_1327 PF01306 LacY proton/sugar symporter S96127_1328 PF00872 Transposase, Mutator family S96127_1329 PF00356 Bacterial regulatory proteins, lacI family S96127_1329 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family S96127_1330 PF02796 Helix-turn-helix domain of resolvase S96127_1330 PF00665 Integrase core domain S96127_1331 PF01695 IstB-like ATP binding protein S96127_1332 PF00356 Bacterial regulatory proteins, lacI family S96127_1332 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family S96127_1333 PF06167 Glucose-regulated metallo-peptidase M90 S96127_1337 PF00005 ABC transporter S96127_1337 PF00664 ABC transporter transmembrane region S96127_1340 PF12833 Helix-turn-helix domain S96127_1342 PF10964 Protein of unknown function (DUF2766) S96127_1343 PF13996 YobH-like protein S96127_1344 PF13974 YebO-like protein S96127_1347 PF00324 Amino acid permease S96127_1349 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP S96127_1351 PF00313 'Cold-shock' DNA-binding domain S96127_1352 PF02578 Multi-copper polyphenol oxidoreductase laccase S96127_1353 PF13847 Methyltransferase domain S96127_1355 PF13426 PAS domain S96127_1355 PF08448 PAS fold S96127_1355 PF08447 PAS fold S96127_1355 PF05231 MASE1 S96127_1355 PF00990 Diguanylate cyclase, GGDEF domain S96127_1355 PF00563 EAL domain S96127_1358 PF07715 TonB-dependent Receptor Plug Domain S96127_1358 PF00593 TonB dependent receptor S96127_1359 PF02659 Putative manganese efflux pump S96127_1360 PF06173 Protein of unknown function (DUF986) S96127_1361 PF03613 PTS system mannose/fructose/sorbose family IID component S96127_1362 PF03609 PTS system sorbose-specific iic component S96127_1363 PF03830 PTS system sorbose subfamily IIB component S96127_1363 PF03610 PTS system fructose IIA component S96127_1365 PF03741 Integral membrane protein TerC family S96127_1365 PF03471 Transporter associated domain S96127_1366 PF01047 MarR family S96127_1367 PF01557 Fumarylacetoacetate (FAA) hydrolase family S96127_1368 PF01557 Fumarylacetoacetate (FAA) hydrolase family S96127_1369 PF00171 Aldehyde dehydrogenase family S96127_1370 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase S96127_1371 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase S96127_1372 PF01557 Fumarylacetoacetate (FAA) hydrolase family S96127_1373 PF03328 HpcH/HpaI aldolase/citrate lyase family S96127_1374 PF07690 Major Facilitator Superfamily S96127_1375 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal S96127_1375 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal S96127_1376 PF01613 Flavin reductase like domain S96127_1377 PF03315 Serine dehydratase beta chain S96127_1377 PF03313 Serine dehydratase alpha chain S96127_1378 PF00293 NUDIX domain S96127_1379 PF00425 chorismate binding enzyme S96127_1379 PF04715 Anthranilate synthase component I, N terminal region S96127_1380 PF03701 Uncharacterised protein family (UPF0181) S96127_1381 PF02222 ATP-grasp domain S96127_1382 PF00271 Helicase conserved C-terminal domain S96127_1382 PF00270 DEAD/DEAH box helicase S96127_1382 PF03880 DbpA RNA binding domain S96127_1383 PF07130 YebG protein S96127_1384 PF04266 ASCH domain S96127_1385 PF13995 YebF-like protein S96127_1386 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain S96127_1386 PF00326 Prolyl oligopeptidase family S96127_1388 PF00561 alpha/beta hydrolase fold S96127_1389 PF06440 DNA polymerase III, theta subunit S96127_1391 PF00210 Ferritin-like domain S96127_1392 PF04234 CopC domain S96127_1394 PF10709 Protein of unknown function (DUF2511) S96127_1397 PF01312 FlhB HrpN YscU SpaS Family S96127_1398 PF00771 FHIPEP family S96127_1399 PF06366 Flagellar protein FlhE S96127_1401 PF09134 Invasin, domain 3 S96127_1401 PF07979 Intimin C-type lectin domain S96127_1401 PF11924 Inverse autotransporter, beta-domain S96127_1401 PF02369 Bacterial Ig-like domain (group 1) S96127_1403 PF02369 Bacterial Ig-like domain (group 1) S96127_1403 PF09134 Invasin, domain 3 S96127_1403 PF11924 Inverse autotransporter, beta-domain S96127_1403 PF07979 Intimin C-type lectin domain S96127_1404 PF05130 FlgN protein S96127_1405 PF04316 Anti-sigma-28 factor, FlgM S96127_1406 PF13144 Chaperone for flagella basal body P-ring formation S96127_1406 PF17656 FlgA N-terminal domain S96127_1407 PF00460 Flagella basal body rod protein S96127_1408 PF00460 Flagella basal body rod protein S96127_1408 PF06429 Flagellar basal body rod FlgEFG protein C-terminal S96127_1409 PF13861 FlgD Tudor-like domain S96127_1409 PF13860 FlgD Ig-like domain S96127_1409 PF03963 Flagellar hook capping protein - N-terminal region S96127_1410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal S96127_1410 PF00460 Flagella basal body rod protein S96127_1410 PF07559 Flagellar basal body protein FlaE S96127_1411 PF06429 Flagellar basal body rod FlgEFG protein C-terminal S96127_1411 PF00460 Flagella basal body rod protein S96127_1412 PF06429 Flagellar basal body rod FlgEFG protein C-terminal S96127_1412 PF00460 Flagella basal body rod protein S96127_1413 PF02107 Flagellar L-ring protein S96127_1414 PF02119 Flagellar P-ring protein S96127_1415 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase S96127_1415 PF10135 Rod binding protein S96127_1416 PF00460 Flagella basal body rod protein S96127_1416 PF06429 Flagellar basal body rod FlgEFG protein C-terminal S96127_1417 PF00669 Bacterial flagellin N-terminal helical region S96127_1418 PF04198 Putative sugar-binding domain S96127_1419 PF00596 Class II Aldolase and Adducin N-terminal domain S96127_1420 PF02653 Branched-chain amino acid transport system / permease component S96127_1421 PF13407 Periplasmic binding protein domain S96127_1422 PF00005 ABC transporter S96127_1423 PF02653 Branched-chain amino acid transport system / permease component S96127_1424 PF00294 pfkB family carbohydrate kinase S96127_1427 PF01311 Bacterial export proteins, family 1 S96127_1428 PF01313 Bacterial export proteins, family 3 S96127_1429 PF00813 FliP family S96127_1430 PF04347 Flagellar biosynthesis protein, FliO S96127_1431 PF16973 Flagellar motor switch protein FliN N-terminal S96127_1431 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term S96127_1432 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term S96127_1432 PF02154 Flagellar motor switch protein FliM S96127_1433 PF03748 Flagellar basal body-associated protein FliL S96127_1434 PF02120 Flagellar hook-length control protein FliK S96127_1435 PF02050 Flagellar FliJ protein S96127_1436 PF18269 T3SS EscN ATPase C-terminal domain S96127_1436 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S96127_1437 PF02108 Flagellar assembly protein FliH S96127_1438 PF14841 FliG middle domain S96127_1438 PF01706 FliG C-terminal domain S96127_1438 PF14842 FliG N-terminal domain S96127_1439 PF08345 Flagellar M-ring protein C-terminal S96127_1439 PF01514 Secretory protein of YscJ/FliF family S96127_1440 PF02049 Flagellar hook-basal body complex protein FliE S96127_1443 PF00730 HhH-GPD superfamily base excision DNA repair protein S96127_1444 PF01966 HD domain S96127_1445 PF02743 Cache domain S96127_1445 PF00672 HAMP domain S96127_1445 PF00211 Adenylate and Guanylate cyclase catalytic domain S96127_1446 PF12833 Helix-turn-helix domain S96127_1447 PF05400 Flagellar protein FliT S96127_1448 PF02561 Flagellar protein FliS S96127_1449 PF07195 Flagellar hook-associated protein 2 C-terminus S96127_1449 PF02465 Flagellar hook-associated protein 2 N-terminus S96127_1449 PF07196 Flagellin hook IN motif S96127_1451 PF00700 Bacterial flagellin C-terminal helical region S96127_1451 PF08884 Flagellin D3 domain S96127_1451 PF00669 Bacterial flagellin N-terminal helical region S96127_1452 PF04539 Sigma-70 region 3 S96127_1452 PF04545 Sigma-70, region 4 S96127_1452 PF04542 Sigma-70 region 2 S96127_1454 PF02899 Phage integrase, N-terminal SAM-like domain S96127_1455 PF00291 Pyridoxal-phosphate dependent enzyme S96127_1456 PF00497 Bacterial extracellular solute-binding proteins, family 3 S96127_1457 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1458 PF00005 ABC transporter S96127_1462 PF18327 Proline utilization A proline dehydrogenase N-terminal domain S96127_1462 PF14850 DNA-binding domain of Proline dehydrogenase S96127_1462 PF01619 Proline dehydrogenase S96127_1462 PF00171 Aldehyde dehydrogenase family S96127_1463 PF00474 Sodium:solute symporter family S96127_1464 PF03239 Iron permease FTR1 family S96127_1465 PF09375 Imelysin S96127_1465 PF13473 Cupredoxin-like domain S96127_1466 PF04261 Dyp-type peroxidase family S96127_1467 PF03358 NADPH-dependent FMN reductase S96127_1468 PF01344 Kelch motif S96127_1469 PF00324 Amino acid permease S96127_1470 PF13505 Outer membrane protein beta-barrel domain S96127_1472 PF06942 GlpM protein S96127_1473 PF10769 Protein of unknown function (DUF2594) S96127_1474 PF00072 Response regulator receiver domain S96127_1474 PF00196 Bacterial regulatory proteins, luxR family S96127_1475 PF01541 GIY-YIG catalytic domain S96127_1475 PF02151 UvrB/uvrC motif S96127_1475 PF08459 UvrC Helix-hairpin-helix N-terminal S96127_1476 PF01066 CDP-alcohol phosphatidyltransferase S96127_1494 PF00872 Transposase, Mutator family S96127_1495 PF00872 Transposase, Mutator family S96127_1499 PF00392 Bacterial regulatory proteins, gntR family S96127_1499 PF07702 UTRA domain S96127_1501 PF01408 Oxidoreductase family, NAD-binding Rossmann fold S96127_1501 PF02894 Oxidoreductase family, C-terminal alpha/beta domain S96127_1503 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1504 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1505 PF08402 TOBE domain S96127_1505 PF00005 ABC transporter S96127_1510 PF00665 Integrase core domain S96127_1510 PF02796 Helix-turn-helix domain of resolvase S96127_1511 PF01695 IstB-like ATP binding protein S96127_1513 PF06761 Intracellular multiplication and human macrophage-killing S96127_1513 PF14331 ImcF-related N-terminal domain S96127_1513 PF06744 Type VI secretion protein IcmF C-terminal S96127_1514 PF04717 Type VI secretion system, phage-baseplate injector S96127_1517 PF07024 ImpE protein S96127_1520 PF08274 PhnA Zinc-Ribbon S96127_1520 PF03831 PhnA domain S96127_1522 PF04011 LemA family S96127_1524 PF00005 ABC transporter S96127_1525 PF03379 CcmB protein S96127_1526 PF01578 Cytochrome C assembly protein S96127_1527 PF04995 Heme exporter protein D (CcmD) S96127_1528 PF03100 CcmE S96127_1529 PF01578 Cytochrome C assembly protein S96127_1529 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal S96127_1530 PF08534 Redoxin S96127_1531 PF03918 Cytochrome C biogenesis protein S96127_1532 PF03918 Cytochrome C biogenesis protein S96127_1533 PF04333 MlaA lipoprotein S96127_1534 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) S96127_1535 PF04175 Protein of unknown function (DUF406) S96127_1536 PF02803 Thiolase, C-terminal domain S96127_1536 PF00108 Thiolase, N-terminal domain S96127_1537 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain S96127_1537 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain S96127_1537 PF00378 Enoyl-CoA hydratase/isomerase S96127_1539 PF00300 Histidine phosphatase superfamily (branch 1) S96127_1541 PF01713 Smr domain S96127_1542 PF05175 Methyltransferase small domain S96127_1543 PF01264 Chorismate synthase S96127_1544 PF03411 Penicillin-insensitive murein endopeptidase S96127_1545 PF01925 Sulfite exporter TauE/SafE S96127_1546 PF04315 Elongation factor P hydroxylase S96127_1547 PF08891 YfcL protein S96127_1548 PF05430 S-adenosyl-L-methionine-dependent methyltransferase S96127_1548 PF01266 FAD dependent oxidoreductase S96127_1549 PF00109 Beta-ketoacyl synthase, N-terminal domain S96127_1549 PF02801 Beta-ketoacyl synthase, C-terminal domain S96127_1550 PF01177 Asp/Glu/Hydantoin racemase S96127_1551 PF00419 Fimbrial protein S96127_1553 PF00892 EamA-like transporter family S96127_1556 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain S96127_1556 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain S96127_1556 PF11890 Domain of unknown function (DUF3410) S96127_1557 PF02774 Semialdehyde dehydrogenase, dimerisation domain S96127_1557 PF01118 Semialdehyde dehydrogenase, NAD binding domain S96127_1558 PF01416 tRNA pseudouridine synthase S96127_1559 PF09335 SNARE associated Golgi protein S96127_1560 PF17848 Acetyl-coA carboxylase zinc finger domain S96127_1560 PF01039 Carboxyl transferase domain S96127_1561 PF02875 Mur ligase family, glutamate ligase domain S96127_1561 PF08245 Mur ligase middle domain S96127_1562 PF05036 Sporulation related domain S96127_1563 PF02674 Colicin V production protein S96127_1564 PF00156 Phosphoribosyl transferase domain S96127_1565 PF02441 Flavoprotein S96127_1567 PF00497 Bacterial extracellular solute-binding proteins, family 3 S96127_1568 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1569 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1570 PF00005 ABC transporter S96127_1571 PF08338 Domain of unknown function (DUF1731) S96127_1571 PF01370 NAD dependent epimerase/dehydratase family S96127_1573 PF12850 Calcineurin-like phosphoesterase superfamily domain S96127_1575 PF00293 NUDIX domain S96127_1576 PF03611 PTS system sugar-specific permease component S96127_1577 PF00872 Transposase, Mutator family S96127_1579 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 S96127_1580 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family S96127_1580 PF00356 Bacterial regulatory proteins, lacI family S96127_1581 PF01515 Phosphate acetyl/butaryl transferase S96127_1581 PF07085 DRTGG domain S96127_1582 PF00871 Acetokinase family S96127_1583 PF04217 Protein of unknown function, DUF412 S96127_1584 PF03887 YfbU domain S96127_1585 PF13419 Haloacid dehalogenase-like hydrolase S96127_1586 PF03600 Citrate transporter S96127_1586 PF02080 TrkA-C domain S96127_1589 PF00155 Aminotransferase class I and II S96127_1591 PF03466 LysR substrate binding domain S96127_1591 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_1592 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 S96127_1593 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit S96127_1594 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit S96127_1594 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit S96127_1596 PF10531 SLBB domain S96127_1596 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit S96127_1596 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region S96127_1597 PF00384 Molybdopterin oxidoreductase S96127_1597 PF01568 Molydopterin dinucleotide binding domain S96127_1597 PF04879 Molybdopterin oxidoreductase Fe4S4 domain S96127_1597 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region S96127_1598 PF00146 NADH dehydrogenase S96127_1599 PF12838 4Fe-4S dicluster domain S96127_1600 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 S96127_1601 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L S96127_1602 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus S96127_1602 PF00361 Proton-conducting membrane transporter S96127_1603 PF00361 Proton-conducting membrane transporter S96127_1604 PF00361 Proton-conducting membrane transporter S96127_1606 PF04074 YhcH/YjgK/YiaL S96127_1607 PF01202 Shikimate kinase S96127_1608 PF00106 short chain dehydrogenase S96127_1609 PF02638 Glycosyl hydrolase-like 10 S96127_1610 PF00356 Bacterial regulatory proteins, lacI family S96127_1612 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain S96127_1612 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain S96127_1613 PF07690 Major Facilitator Superfamily S96127_1614 PF03928 Haem-degrading S96127_1615 PF00920 Dehydratase family S96127_1617 PF05957 Bacterial protein of unknown function (DUF883) S96127_1619 PF00425 chorismate binding enzyme S96127_1620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain S96127_1620 PF16582 Middle domain of thiamine pyrophosphate S96127_1620 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain S96127_1621 PF12697 Alpha/beta hydrolase family S96127_1622 PF00378 Enoyl-CoA hydratase/isomerase S96127_1623 PF13378 Enolase C-terminal domain-like S96127_1624 PF00501 AMP-binding enzyme S96127_1624 PF13193 AMP-binding enzyme C-terminal domain S96127_1625 PF02885 Glycosyl transferase family, helical bundle domain S96127_1627 PF07338 Protein of unknown function (DUF1471) S96127_1628 PF05971 RNA methyltransferase S96127_1630 PF01695 IstB-like ATP binding protein S96127_1631 PF00665 Integrase core domain S96127_1631 PF02796 Helix-turn-helix domain of resolvase S96127_1632 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S96127_1632 PF08447 PAS fold S96127_1632 PF13426 PAS domain S96127_1633 PF00005 ABC transporter S96127_1634 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1635 PF00497 Bacterial extracellular solute-binding proteins, family 3 S96127_1637 PF00210 Ferritin-like domain S96127_1638 PF13649 Methyltransferase domain S96127_1640 PF00892 EamA-like transporter family S96127_1642 PF13505 Outer membrane protein beta-barrel domain S96127_1646 PF00107 Zinc-binding dehydrogenase S96127_1646 PF08240 Alcohol dehydrogenase GroES-like domain S96127_1648 PF13407 Periplasmic binding protein domain S96127_1649 PF00005 ABC transporter S96127_1650 PF02653 Branched-chain amino acid transport system / permease component S96127_1651 PF00356 Bacterial regulatory proteins, lacI family S96127_1652 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_1652 PF03466 LysR substrate binding domain S96127_1653 PF00180 Isocitrate/isopropylmalate dehydrogenase S96127_1654 PF02028 BCCT, betaine/carnitine/choline family transporter S96127_1655 PF00848 Ring hydroxylating alpha subunit (catalytic domain) S96127_1655 PF00355 Rieske [2Fe-2S] domain S96127_1656 PF00355 Rieske [2Fe-2S] domain S96127_1656 PF00848 Ring hydroxylating alpha subunit (catalytic domain) S96127_1657 PF00175 Oxidoreductase NAD-binding domain S96127_1657 PF00970 Oxidoreductase FAD-binding domain S96127_1657 PF00111 2Fe-2S iron-sulfur cluster binding domain S96127_1658 PF08479 POTRA domain, ShlB-type S96127_1658 PF17287 POTRA domain S96127_1658 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB S96127_1659 PF13018 Extended Signal Peptide of Type V secretion system S96127_1659 PF04829 Pre-toxin domain with VENN motif S96127_1659 PF05860 haemagglutination activity domain S96127_1659 PF13332 Hemagglutinin repeat S96127_1663 PF05860 haemagglutination activity domain S96127_1663 PF13332 Hemagglutinin repeat S96127_1663 PF13018 Extended Signal Peptide of Type V secretion system S96127_1663 PF04829 Pre-toxin domain with VENN motif S96127_1668 PF05860 haemagglutination activity domain S96127_1668 PF05594 Haemagluttinin repeat S96127_1668 PF13332 Hemagglutinin repeat S96127_1668 PF04829 Pre-toxin domain with VENN motif S96127_1668 PF15526 Novel toxin 21 S96127_1670 PF17912 MalK OB fold domain S96127_1670 PF00005 ABC transporter S96127_1671 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I S96127_1671 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II S96127_1671 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III S96127_1671 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain S96127_1672 PF00356 Bacterial regulatory proteins, lacI family S96127_1674 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1675 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1676 PF04041 beta-1,4-mannooligosaccharide phosphorylase S96127_1680 PF00924 Mechanosensitive ion channel S96127_1681 PF01867 CRISPR associated protein Cas1 S96127_1683 PF09611 CRISPR-associated protein (Cas_Csy1) S96127_1684 PF09614 CRISPR-associated protein (Cas_Csy2) S96127_1685 PF09615 CRISPR-associated protein (Cas_Csy3) S96127_1686 PF09618 CRISPR-associated protein (Cas_Csy4) S96127_1687 PF00248 Aldo/keto reductase family S96127_1689 PF00083 Sugar (and other) transporter S96127_1691 PF03466 LysR substrate binding domain S96127_1691 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_1692 PF03472 Autoinducer binding domain S96127_1692 PF00196 Bacterial regulatory proteins, luxR family S96127_1693 PF00765 Autoinducer synthase S96127_1697 PF00581 Rhodanese-like domain S96127_1697 PF17773 UPF0176 acylphosphatase like domain S96127_1697 PF12368 Rhodanase C-terminal S96127_1698 PF01594 AI-2E family transporter S96127_1699 PF00072 Response regulator receiver domain S96127_1699 PF00196 Bacterial regulatory proteins, luxR family S96127_1700 PF01266 FAD dependent oxidoreductase S96127_1701 PF00872 Transposase, Mutator family S96127_1702 PF00872 Transposase, Mutator family S96127_1707 PF08242 Methyltransferase domain S96127_1715 PF00512 His Kinase A (phospho-acceptor) domain S96127_1715 PF00672 HAMP domain S96127_1715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_1716 PF00072 Response regulator receiver domain S96127_1716 PF00486 Transcriptional regulatory protein, C terminal S96127_1717 PF02129 X-Pro dipeptidyl-peptidase (S15 family) S96127_1727 PF01926 50S ribosome-binding GTPase S96127_1727 PF06071 Protein of unknown function (DUF933) S96127_1728 PF01195 Peptidyl-tRNA hydrolase S96127_1729 PF10762 Protein of unknown function (DUF2583) S96127_1731 PF14572 Phosphoribosyl synthetase-associated domain S96127_1731 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase S96127_1733 PF08544 GHMP kinases C terminal S96127_1733 PF00288 GHMP kinases N terminal domain S96127_1734 PF03550 Outer membrane lipoprotein LolB S96127_1735 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain S96127_1735 PF01488 Shikimate / quinate 5-dehydrogenase S96127_1735 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain S96127_1736 PF03462 PCRF domain S96127_1736 PF00472 RF-1 domain S96127_1737 PF13847 Methyltransferase domain S96127_1737 PF17827 PrmC N-terminal domain S96127_1738 PF04247 Invasion gene expression up-regulator, SirB S96127_1739 PF13369 Transglutaminase-like superfamily S96127_1740 PF00793 DAHP synthetase I family S96127_1741 PF01740 STAS domain S96127_1741 PF00916 Sulfate permease family S96127_1743 PF03009 Glycerophosphoryl diester phosphodiesterase family S96127_1745 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1746 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1747 PF00005 ABC transporter S96127_1747 PF08402 TOBE domain S96127_1749 PF08402 TOBE domain S96127_1749 PF00005 ABC transporter S96127_1750 PF03009 Glycerophosphoryl diester phosphodiesterase family S96127_1751 PF01325 Iron dependent repressor, N-terminal DNA binding domain S96127_1751 PF00480 ROK family S96127_1752 PF02811 PHP domain S96127_1753 PF02613 Nitrate reductase delta subunit S96127_1754 PF07273 Protein of unknown function (DUF1439) S96127_1756 PF07690 Major Facilitator Superfamily S96127_1758 PF13302 Acetyltransferase (GNAT) domain S96127_1759 PF04337 Protein of unknown function, DUF480 S96127_1760 PF03023 Lipid II flippase MurJ S96127_1761 PF17287 POTRA domain S96127_1761 PF08479 POTRA domain, ShlB-type S96127_1761 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB S96127_1762 PF05860 haemagglutination activity domain S96127_1762 PF13332 Hemagglutinin repeat S96127_1763 PF00750 tRNA synthetases class I (R) S96127_1763 PF05746 DALR anticodon binding domain S96127_1763 PF03485 Arginyl tRNA synthetase N terminal domain S96127_1764 PF06185 YecM protein S96127_1766 PF03932 CutC family S96127_1767 PF08003 Protein of unknown function (DUF1698) S96127_1768 PF13649 Methyltransferase domain S96127_1769 PF01124 MAPEG family S96127_1770 PF01904 Protein of unknown function DUF72 S96127_1771 PF02938 GAD domain S96127_1771 PF00152 tRNA synthetases class II (D, K and N) S96127_1771 PF01336 OB-fold nucleic acid binding domain S96127_1772 PF00293 NUDIX domain S96127_1773 PF01709 Transcriptional regulator S96127_1774 PF02075 Crossover junction endodeoxyribonuclease RuvC S96127_1775 PF07499 RuvA, C-terminal domain S96127_1775 PF01330 RuvA N terminal domain S96127_1776 PF05496 Holliday junction DNA helicase RuvB P-loop domain S96127_1776 PF05491 RuvB C-terminal winged helix domain S96127_1776 PF17864 RuvB AAA lid domain S96127_1777 PF00950 ABC 3 transport family S96127_1778 PF00005 ABC transporter S96127_1779 PF01297 Zinc-uptake complex component A periplasmic S96127_1780 PF01551 Peptidase family M23 S96127_1780 PF08525 Opacity-associated protein A N-terminal motif S96127_1780 PF01476 LysM domain S96127_1781 PF03279 Bacterial lipid A biosynthesis acyltransferase S96127_1782 PF00224 Pyruvate kinase, barrel domain S96127_1782 PF02887 Pyruvate kinase, alpha/beta domain S96127_1783 PF01418 Helix-turn-helix domain, rpiR family S96127_1783 PF01380 SIS domain S96127_1784 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain S96127_1784 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain S96127_1785 PF01081 KDPG and KHG aldolase S96127_1786 PF00893 Small Multidrug Resistance protein S96127_1787 PF00893 Small Multidrug Resistance protein S96127_1788 PF01042 Endoribonuclease L-PSP S96127_1789 PF13307 Helicase C-terminal domain S96127_1789 PF04851 Type III restriction enzyme, res subunit S96127_1790 PF00814 Glycoprotease family S96127_1791 PF03843 Outer membrane lipoprotein Slp family S96127_1792 PF13193 AMP-binding enzyme C-terminal domain S96127_1792 PF00501 AMP-binding enzyme S96127_1793 PF01612 3'-5' exonuclease S96127_1793 PF00570 HRDC domain S96127_1794 PF03776 Septum formation topological specificity factor MinE S96127_1795 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain S96127_1796 PF03775 Septum formation inhibitor MinC, C-terminal domain S96127_1796 PF05209 Septum formation inhibitor MinC, N-terminal domain S96127_1797 PF05166 YcgL domain S96127_1799 PF13406 Transglycosylase SLT domain S96127_1800 PF01557 Fumarylacetoacetate (FAA) hydrolase family S96127_1801 PF03692 Putative zinc- or iron-chelating domain S96127_1802 PF12167 Arm DNA-binding domain S96127_1802 PF00589 Phage integrase family S96127_1803 PF00665 Integrase core domain S96127_1803 PF02796 Helix-turn-helix domain of resolvase S96127_1804 PF01695 IstB-like ATP binding protein S96127_1807 PF05772 NinB protein S96127_1809 PF06530 Phage antitermination protein Q S96127_1822 PF00872 Transposase, Mutator family S96127_1840 PF01797 Transposase IS200 like S96127_1844 PF03869 Arc-like DNA binding domain S96127_1854 PF02413 Caudovirales tail fibre assembly protein, lambda gpK S96127_1856 PF00872 Transposase, Mutator family S96127_1858 PF00266 Aminotransferase class-V S96127_1861 PF02600 Disulfide bond formation protein DsbB S96127_1862 PF06450 Bacterial Na+/H+ antiporter B (NhaB) S96127_1863 PF07840 FadR C-terminal domain S96127_1863 PF00392 Bacterial regulatory proteins, gntR family S96127_1864 PF04293 SpoVR like protein S96127_1865 PF01266 FAD dependent oxidoreductase S96127_1866 PF07690 Major Facilitator Superfamily S96127_1867 PF05726 Pirin C-terminal cupin domain S96127_1867 PF02678 Pirin S96127_1868 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_1868 PF03466 LysR substrate binding domain S96127_1870 PF04285 Protein of unknown function (DUF444) S96127_1871 PF06798 PrkA serine protein kinase C-terminal domain S96127_1871 PF08298 PrkA AAA domain S96127_1872 PF06629 MltA-interacting protein MipA S96127_1873 PF01263 Aldose 1-epimerase S96127_1874 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain S96127_1874 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain S96127_1875 PF01641 SelR domain S96127_1876 PF07023 Protein of unknown function (DUF1315) S96127_1877 PF00857 Isochorismatase family S96127_1878 PF00710 Asparaginase, N-terminal S96127_1878 PF17763 Glutaminase/Asparaginase C-terminal domain S96127_1879 PF01343 Peptidase family S49 S96127_1880 PF00881 Nitroreductase family S96127_1881 PF00586 AIR synthase related protein, N-terminal domain S96127_1881 PF02769 AIR synthase related protein, C-terminal domain S96127_1882 PF01751 Toprim domain S96127_1882 PF01131 DNA topoisomerase S96127_1883 PF07383 Protein of unknown function (DUF1496) S96127_1884 PF00293 NUDIX domain S96127_1885 PF03372 Endonuclease/Exonuclease/phosphatase family S96127_1890 PF00872 Transposase, Mutator family S96127_1891 PF01842 ACT domain S96127_1891 PF00551 Formyl transferase S96127_1892 PF02810 SEC-C motif S96127_1893 PF00072 Response regulator receiver domain S96127_1894 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain S96127_1894 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain S96127_1894 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain S96127_1896 PF00816 H-NS histone family S96127_1897 PF00265 Thymidine kinase S96127_1898 PF01695 IstB-like ATP binding protein S96127_1899 PF00665 Integrase core domain S96127_1899 PF02796 Helix-turn-helix domain of resolvase S96127_1900 PF00465 Iron-containing alcohol dehydrogenase S96127_1900 PF00171 Aldehyde dehydrogenase family S96127_1901 PF01914 MarC family integral membrane protein S96127_1903 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle S96127_1904 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1905 PF00528 Binding-protein-dependent transport system inner membrane component S96127_1905 PF12911 N-terminal TM domain of oligopeptide transport permease C S96127_1906 PF00005 ABC transporter S96127_1906 PF08352 Oligopeptide/dipeptide transporter, C-terminal region S96127_1907 PF00005 ABC transporter S96127_1907 PF08352 Oligopeptide/dipeptide transporter, C-terminal region S96127_1909 PF04269 Protein of unknown function, DUF440 S96127_1910 PF13396 Phospholipase_D-nuclease N-terminal S96127_1910 PF13091 PLD-like domain S96127_1912 PF13505 Outer membrane protein beta-barrel domain S96127_1915 PF03795 YCII-related domain S96127_1916 PF03544 Gram-negative bacterial TonB protein C-terminal S96127_1917 PF00872 Transposase, Mutator family S96127_1918 PF03061 Thioesterase superfamily S96127_1919 PF04279 Intracellular septation protein A S96127_1924 PF03922 OmpW family S96127_1926 PF00290 Tryptophan synthase alpha chain S96127_1927 PF00291 Pyridoxal-phosphate dependent enzyme S96127_1928 PF00218 Indole-3-glycerol phosphate synthase S96127_1928 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase S96127_1929 PF00591 Glycosyl transferase family, a/b domain S96127_1929 PF02885 Glycosyl transferase family, helical bundle domain S96127_1930 PF00117 Glutamine amidotransferase class-I S96127_1931 PF00425 chorismate binding enzyme S96127_1931 PF04715 Anthranilate synthase component I, N terminal region S96127_1932 PF02811 PHP domain S96127_1933 PF01300 Telomere recombination S96127_1934 PF00849 RNA pseudouridylate synthase S96127_1934 PF01479 S4 domain S96127_1935 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP S96127_1936 PF00106 short chain dehydrogenase S96127_1937 PF08496 Peptidase family S49 N-terminal S96127_1937 PF01343 Peptidase family S49 S96127_1938 PF10692 Protein of unknown function (DUF2498) S96127_1940 PF01751 Toprim domain S96127_1940 PF01131 DNA topoisomerase S96127_1940 PF08272 Topoisomerase I zinc-ribbon-like S96127_1940 PF01396 Topoisomerase DNA binding C4 zinc finger S96127_1941 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_1941 PF03466 LysR substrate binding domain S96127_1943 PF00330 Aconitase family (aconitate hydratase) S96127_1943 PF00694 Aconitase C-terminal domain S96127_1944 PF00925 GTP cyclohydrolase II S96127_1945 PF01569 PAP2 superfamily S96127_1946 PF06305 Lipopolysaccharide assembly protein A domain S96127_1947 PF18073 Rubredoxin metal binding domain S96127_1949 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family S96127_1950 PF01253 Translation initiation factor SUI1 S96127_1951 PF05433 Glycine zipper 2TM domain S96127_1952 PF00596 Class II Aldolase and Adducin N-terminal domain S96127_1953 PF00596 Class II Aldolase and Adducin N-terminal domain S96127_1955 PF00923 Transaldolase/Fructose-6-phosphate aldolase S96127_1956 PF04328 Selenoprotein, putative S96127_1957 PF02554 Carbon starvation protein CstA S96127_1957 PF13722 5TM C-terminal transporter carbon starvation CstA S96127_1959 PF17876 Cold shock domain S96127_1959 PF08206 Ribonuclease B OB domain S96127_1959 PF00773 RNB domain S96127_1959 PF00575 S1 RNA binding domain S96127_1960 PF07690 Major Facilitator Superfamily S96127_1961 PF01370 NAD dependent epimerase/dehydratase family S96127_1962 PF00730 HhH-GPD superfamily base excision DNA repair protein S96127_1962 PF00633 Helix-hairpin-helix motif S96127_1962 PF10576 Iron-sulfur binding domain of endonuclease III S96127_1963 PF02508 Rnf-Nqr subunit, membrane protein S96127_1964 PF04205 FMN-binding domain S96127_1965 PF03116 NQR2, RnfD, RnfE family S96127_1966 PF06445 GyrI-like small molecule binding domain S96127_1966 PF12833 Helix-turn-helix domain S96127_1967 PF10531 SLBB domain S96127_1967 PF13375 RnfC Barrel sandwich hybrid domain S96127_1967 PF13237 4Fe-4S dicluster domain S96127_1967 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit S96127_1968 PF04060 Putative Fe-S cluster S96127_1969 PF02508 Rnf-Nqr subunit, membrane protein S96127_1970 PF10754 Protein of unknown function (DUF2569) S96127_1971 PF00005 ABC transporter S96127_1971 PF03412 Peptidase C39 family S96127_1971 PF00664 ABC transporter transmembrane region S96127_1972 PF03412 Peptidase C39 family S96127_1972 PF00005 ABC transporter S96127_1972 PF00664 ABC transporter transmembrane region S96127_1973 PF13533 Biotin-lipoyl like S96127_1975 PF03412 Peptidase C39 family S96127_1975 PF00664 ABC transporter transmembrane region S96127_1975 PF00005 ABC transporter S96127_1977 PF02610 L-arabinose isomerase S96127_1977 PF11762 L-arabinose isomerase C-terminal domain S96127_1978 PF02782 FGGY family of carbohydrate kinases, C-terminal domain S96127_1979 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family S96127_1980 PF00005 ABC transporter S96127_1981 PF02653 Branched-chain amino acid transport system / permease component S96127_1982 PF02311 AraC-like ligand binding domain S96127_1982 PF12833 Helix-turn-helix domain S96127_1983 PF01408 Oxidoreductase family, NAD-binding Rossmann fold S96127_1983 PF02894 Oxidoreductase family, C-terminal alpha/beta domain S96127_1984 PF13593 SBF-like CPA transporter family (DUF4137) S96127_1986 PF06097 Bacterial protein of unknown function (DUF945) S96127_1987 PF01238 Phosphomannose isomerase type I S96127_1988 PF10415 Fumarase C C-terminus S96127_1988 PF00206 Lyase S96127_1989 PF05472 DNA replication terminus site-binding protein (Ter protein) S96127_1990 PF07690 Major Facilitator Superfamily S96127_1991 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_1991 PF03466 LysR substrate binding domain S96127_1992 PF00480 ROK family S96127_1994 PF00654 Voltage gated chloride channel S96127_1996 PF00356 Bacterial regulatory proteins, lacI family S96127_1998 PF13407 Periplasmic binding protein domain S96127_1999 PF09084 NMT1/THI5 like S96127_2000 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2001 PF00005 ABC transporter S96127_2002 PF01048 Phosphorylase superfamily S96127_2002 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus S96127_2008 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain S96127_2008 PF00205 Thiamine pyrophosphate enzyme, central domain S96127_2008 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain S96127_2009 PF01842 ACT domain S96127_2010 PF13419 Haloacid dehalogenase-like hydrolase S96127_2012 PF00245 Alkaline phosphatase S96127_2013 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain S96127_2013 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain S96127_2014 PF13545 Crp-like helix-turn-helix domain S96127_2014 PF00027 Cyclic nucleotide-binding domain S96127_2015 PF00582 Universal stress protein family S96127_2016 PF02233 NAD(P) transhydrogenase beta subunit S96127_2017 PF01262 Alanine dehydrogenase/PNT, C-terminal domain S96127_2017 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch S96127_2017 PF05222 Alanine dehydrogenase/PNT, N-terminal domain S96127_2019 PF07338 Protein of unknown function (DUF1471) S96127_2020 PF13520 Amino acid permease S96127_2022 PF00486 Transcriptional regulatory protein, C terminal S96127_2022 PF00072 Response regulator receiver domain S96127_2023 PF00512 His Kinase A (phospho-acceptor) domain S96127_2023 PF00672 HAMP domain S96127_2023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_2024 PF02074 Carboxypeptidase Taq (M32) metallopeptidase S96127_2027 PF14431 YwqJ-like deaminase S96127_2027 PF18807 Tripartite Tc toxins repeat S96127_2030 PF01292 Prokaryotic cytochrome b561 S96127_2033 PF00089 Trypsin S96127_2036 PF11898 Domain of unknown function (DUF3418) S96127_2036 PF00270 DEAD/DEAH box helicase S96127_2036 PF04408 Helicase associated domain (HA2) S96127_2036 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold S96127_2036 PF00271 Helicase conserved C-terminal domain S96127_2037 PF02525 Flavodoxin-like fold S96127_2038 PF00325 Bacterial regulatory proteins, crp family S96127_2038 PF04198 Putative sugar-binding domain S96127_2039 PF01232 Mannitol dehydrogenase Rossmann domain S96127_2039 PF08125 Mannitol dehydrogenase C-terminal domain S96127_2040 PF07027 Protein of unknown function (DUF1318) S96127_2041 PF13617 YnbE-like lipoprotein S96127_2042 PF11739 Dicarboxylate transport S96127_2043 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain S96127_2043 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain S96127_2044 PF03724 META domain S96127_2045 PF03891 Domain of unknown function (DUF333) S96127_2046 PF02308 MgtC family S96127_2047 PF00893 Small Multidrug Resistance protein S96127_2048 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg S96127_2048 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II S96127_2048 PF10371 Domain of unknown function S96127_2048 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase S96127_2048 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain S96127_2049 PF01171 PP-loop family S96127_2051 PF07859 alpha/beta hydrolase fold S96127_2054 PF01544 CorA-like Mg2+ transporter protein S96127_2055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle S96127_2056 PF00246 Zinc carboxypeptidase S96127_2057 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain S96127_2057 PF13378 Enolase C-terminal domain-like S96127_2058 PF08534 Redoxin S96127_2060 PF01797 Transposase IS200 like S96127_2061 PF00158 Sigma-54 interaction domain S96127_2061 PF18024 Helix-turn-helix domain S96127_2062 PF09722 Protein of unknown function (DUF2384) S96127_2063 PF08808 RES domain S96127_2064 PF05128 Domain of unknown function (DUF697) S96127_2065 PF04317 YcjX-like family, DUF463 S96127_2067 PF04024 PspC domain S96127_2068 PF06667 Phage shock protein B S96127_2069 PF04012 PspA/IM30 family S96127_2070 PF02954 Bacterial regulatory protein, Fis family S96127_2070 PF00158 Sigma-54 interaction domain S96127_2071 PF01797 Transposase IS200 like S96127_2073 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle S96127_2074 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2075 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2075 PF12911 N-terminal TM domain of oligopeptide transport permease C S96127_2076 PF00005 ABC transporter S96127_2076 PF08352 Oligopeptide/dipeptide transporter, C-terminal region S96127_2077 PF00005 ABC transporter S96127_2080 PF00854 POT family S96127_2081 PF04893 Yip1 domain S96127_2082 PF11656 YjbD family (DUF3811) S96127_2083 PF00043 Glutathione S-transferase, C-terminal domain S96127_2083 PF02798 Glutathione S-transferase, N-terminal domain S96127_2084 PF02798 Glutathione S-transferase, N-terminal domain S96127_2084 PF00043 Glutathione S-transferase, C-terminal domain S96127_2085 PF08543 Phosphomethylpyrimidine kinase S96127_2086 PF00579 tRNA synthetases class I (W and Y) S96127_2086 PF01479 S4 domain S96127_2087 PF01243 Pyridoxamine 5'-phosphate oxidase S96127_2087 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region S96127_2088 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme S96127_2089 PF03702 Anhydro-N-acetylmuramic acid kinase S96127_2090 PF05433 Glycine zipper 2TM domain S96127_2091 PF01047 MarR family S96127_2092 PF00884 Sulfatase S96127_2092 PF08019 Phosphoethanolamine transferase EptA/EptB S96127_2093 PF16925 Tetracyclin repressor-like, C-terminal domain S96127_2093 PF00440 Bacterial regulatory proteins, tetR family S96127_2094 PF00724 NADH:flavin oxidoreductase / NADH oxidase family S96127_2095 PF18807 Tripartite Tc toxins repeat S96127_2095 PF14431 YwqJ-like deaminase S96127_2096 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily S96127_2097 PF00929 Exonuclease S96127_2098 PF00462 Glutaredoxin S96127_2099 PF00877 NlpC/P60 family S96127_2100 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain S96127_2100 PF02777 Iron/manganese superoxide dismutases, C-terminal domain S96127_2102 PF00356 Bacterial regulatory proteins, lacI family S96127_2103 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_2103 PF03466 LysR substrate binding domain S96127_2104 PF07690 Major Facilitator Superfamily S96127_2106 PF00677 Lumazine binding domain S96127_2107 PF01554 MatE S96127_2108 PF00224 Pyruvate kinase, barrel domain S96127_2108 PF02887 Pyruvate kinase, alpha/beta domain S96127_2109 PF04728 Lipoprotein leucine-zipper S96127_2111 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain S96127_2111 PF01367 5'-3' exonuclease, C-terminal SAM fold S96127_2112 PF00665 Integrase core domain S96127_2112 PF02796 Helix-turn-helix domain of resolvase S96127_2113 PF01695 IstB-like ATP binding protein S96127_2114 PF03734 L,D-transpeptidase catalytic domain S96127_2114 PF17969 L,D-transpeptidase C-terminal domain S96127_2114 PF01476 LysM domain S96127_2115 PF02657 Fe-S metabolism associated domain S96127_2116 PF00266 Aminotransferase class-V S96127_2117 PF01458 Uncharacterized protein family (UPF0051) S96127_2118 PF00005 ABC transporter S96127_2119 PF01458 Uncharacterized protein family (UPF0051) S96127_2120 PF01521 Iron-sulphur cluster biosynthesis S96127_2121 PF03061 Thioesterase superfamily S96127_2122 PF02913 FAD linked oxidases, C-terminal domain S96127_2122 PF01565 FAD binding domain S96127_2122 PF13183 4Fe-4S dicluster domain S96127_2123 PF01594 AI-2E family transporter S96127_2124 PF00391 PEP-utilising enzyme, mobile domain S96127_2124 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain S96127_2124 PF02896 PEP-utilising enzyme, TIM barrel domain S96127_2125 PF03618 Kinase/pyrophosphorylase S96127_2126 PF00793 DAHP synthetase I family S96127_2127 PF02696 Uncharacterized ACR, YdiU/UPF0061 family S96127_2128 PF02696 Uncharacterized ACR, YdiU/UPF0061 family S96127_2129 PF10437 Bacterial lipoate protein ligase C-terminus S96127_2129 PF03099 Biotin/lipoate A/B protein ligase family S96127_2130 PF00877 NlpC/P60 family S96127_2132 PF00892 EamA-like transporter family S96127_2133 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase S96127_2134 PF01522 Polysaccharide deacetylase S96127_2135 PF00551 Formyl transferase S96127_2135 PF02911 Formyl transferase, C-terminal domain S96127_2135 PF01370 NAD dependent epimerase/dehydratase family S96127_2136 PF00535 Glycosyl transferase family 2 S96127_2137 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family S96127_2138 PF00005 ABC transporter S96127_2139 PF00255 Glutathione peroxidase S96127_2140 PF01032 FecCD transport family S96127_2142 PF00216 Bacterial DNA-binding protein S96127_2143 PF03484 tRNA synthetase B5 domain S96127_2143 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain S96127_2143 PF03147 Ferredoxin-fold anticodon binding domain S96127_2143 PF03483 B3/4 domain S96127_2143 PF01588 Putative tRNA binding domain S96127_2144 PF01409 tRNA synthetases class II core domain (F) S96127_2144 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain S96127_2145 PF00453 Ribosomal protein L20 S96127_2146 PF01632 Ribosomal protein L35 S96127_2147 PF00707 Translation initiation factor IF-3, C-terminal domain S96127_2147 PF05198 Translation initiation factor IF-3, N-terminal domain S96127_2148 PF03129 Anticodon binding domain S96127_2148 PF02824 TGS domain S96127_2148 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) S96127_2148 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain S96127_2153 PF01914 MarC family integral membrane protein S96127_2154 PF01464 Transglycosylase SLT domain S96127_2155 PF01297 Zinc-uptake complex component A periplasmic S96127_2156 PF00005 ABC transporter S96127_2157 PF00950 ABC 3 transport family S96127_2158 PF00950 ABC 3 transport family S96127_2160 PF03881 Fructosamine kinase S96127_2161 PF14002 YniB-like protein S96127_2162 PF13419 Haloacid dehalogenase-like hydrolase S96127_2163 PF00872 Transposase, Mutator family S96127_2164 PF07883 Cupin domain S96127_2165 PF04962 KduI/IolB family S96127_2167 PF06917 Periplasmic pectate lyase S96127_2168 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2169 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2170 PF03459 TOBE domain S96127_2170 PF17912 MalK OB fold domain S96127_2170 PF00005 ABC transporter S96127_2171 PF01547 Bacterial extracellular solute-binding protein S96127_2172 PF06178 Oligogalacturonate-specific porin protein (KdgM) S96127_2173 PF04307 LexA-binding, inner membrane-associated putative hydrolase S96127_2174 PF00375 Sodium:dicarboxylate symporter family S96127_2175 PF01510 N-acetylmuramoyl-L-alanine amidase S96127_2176 PF01614 Bacterial transcriptional regulator S96127_2176 PF09339 IclR helix-turn-helix domain S96127_2177 PF14583 Oligogalacturonate lyase S96127_2178 PF07690 Major Facilitator Superfamily S96127_2179 PF02753 Pili assembly chaperone PapD, C-terminal domain S96127_2179 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain S96127_2181 PF00577 Outer membrane usher protein S96127_2181 PF13954 PapC N-terminal domain S96127_2181 PF13953 PapC C-terminal domain S96127_2182 PF02753 Pili assembly chaperone PapD, C-terminal domain S96127_2182 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain S96127_2183 PF00419 Fimbrial protein S96127_2184 PF01435 Peptidase family M48 S96127_2185 PF11818 C-terminal domain of tail specific protease (DUF3340) S96127_2185 PF00595 PDZ domain S96127_2185 PF03572 Peptidase family S41 S96127_2185 PF17804 Tail specific protease N-terminal domain S96127_2186 PF04352 ProQ/FINO family S96127_2186 PF17516 ProQ C-terminal domain S96127_2187 PF13185 GAF domain S96127_2189 PF04403 Paraquat-inducible protein A S96127_2190 PF02470 MlaD protein S96127_2195 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain S96127_2195 PF02753 Pili assembly chaperone PapD, C-terminal domain S96127_2198 PF07351 Protein of unknown function (DUF1480) S96127_2201 PF02796 Helix-turn-helix domain of resolvase S96127_2201 PF00665 Integrase core domain S96127_2202 PF01695 IstB-like ATP binding protein S96127_2208 PF00842 Alanine racemase, C-terminal domain S96127_2208 PF01168 Alanine racemase, N-terminal domain S96127_2210 PF13018 Extended Signal Peptide of Type V secretion system S96127_2210 PF03895 YadA-like membrane anchor domain S96127_2210 PF05658 Head domain of trimeric autotransporter adhesin S96127_2210 PF05662 Coiled stalk of trimeric autotransporter adhesin S96127_2211 PF13018 Extended Signal Peptide of Type V secretion system S96127_2211 PF03895 YadA-like membrane anchor domain S96127_2211 PF05662 Coiled stalk of trimeric autotransporter adhesin S96127_2211 PF05658 Head domain of trimeric autotransporter adhesin S96127_2212 PF01510 N-acetylmuramoyl-L-alanine amidase S96127_2214 PF04344 Chemotaxis phosphatase, CheZ S96127_2215 PF00072 Response regulator receiver domain S96127_2216 PF00072 Response regulator receiver domain S96127_2216 PF01339 CheB methylesterase S96127_2217 PF03705 CheR methyltransferase, all-alpha domain S96127_2217 PF01739 CheR methyltransferase, SAM binding domain S96127_2218 PF00672 HAMP domain S96127_2218 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S96127_2218 PF02203 Tar ligand binding domain homologue S96127_2219 PF02203 Tar ligand binding domain homologue S96127_2219 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S96127_2219 PF00672 HAMP domain S96127_2222 PF12951 Passenger-associated-transport-repeat S96127_2223 PF13309 HTH domain S96127_2223 PF08348 YheO-like PAS domain S96127_2225 PF01042 Endoribonuclease L-PSP S96127_2226 PF07690 Major Facilitator Superfamily S96127_2227 PF01584 CheW-like domain S96127_2228 PF02895 Signal transducing histidine kinase, homodimeric domain S96127_2228 PF09078 CheY binding S96127_2228 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_2228 PF01584 CheW-like domain S96127_2228 PF01627 Hpt domain S96127_2229 PF13677 Membrane MotB of proton-channel complex MotA/MotB S96127_2229 PF00691 OmpA family S96127_2230 PF01618 MotA/TolQ/ExbB proton channel family S96127_2231 PF05280 Flagellar transcriptional activator (FlhC) S96127_2232 PF05247 Flagellar transcriptional activator (FlhD) S96127_2233 PF00689 Cation transporting ATPase, C-terminus S96127_2233 PF00690 Cation transporter/ATPase, N-terminus S96127_2234 PF02308 MgtC family S96127_2235 PF00672 HAMP domain S96127_2235 PF02203 Tar ligand binding domain homologue S96127_2235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S96127_2236 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S96127_2236 PF02203 Tar ligand binding domain homologue S96127_2236 PF00672 HAMP domain S96127_2237 PF10781 Dextransucrase DSRB S96127_2238 PF00313 'Cold-shock' DNA-binding domain S96127_2239 PF00703 Glycosyl hydrolases family 2 S96127_2239 PF02837 Glycosyl hydrolases family 2, sugar binding domain S96127_2239 PF02836 Glycosyl hydrolases family 2, TIM barrel domain S96127_2239 PF16353 Domain of unknown function(DUF4981) S96127_2239 PF02929 Beta galactosidase small chain S96127_2240 PF00550 Phosphopantetheine attachment site S96127_2240 PF14765 Polyketide synthase dehydratase S96127_2240 PF00109 Beta-ketoacyl synthase, N-terminal domain S96127_2240 PF08659 KR domain S96127_2240 PF02801 Beta-ketoacyl synthase, C-terminal domain S96127_2240 PF08240 Alcohol dehydrogenase GroES-like domain S96127_2240 PF16197 Ketoacyl-synthetase C-terminal extension S96127_2240 PF00698 Acyl transferase domain S96127_2240 PF00107 Zinc-binding dehydrogenase S96127_2241 PF10777 Inner membrane protein YlaC S96127_2243 PF13404 AsnC-type helix-turn-helix domain S96127_2243 PF01037 Lrp/AsnC ligand binding domain S96127_2245 PF14001 YdfZ protein S96127_2247 PF00328 Histidine phosphatase superfamily (branch 2) S96127_2250 PF01638 HxlR-like helix-turn-helix S96127_2251 PF05368 NmrA-like family S96127_2252 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S96127_2252 PF08447 PAS fold S96127_2254 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family S96127_2254 PF00356 Bacterial regulatory proteins, lacI family S96127_2255 PF00180 Isocitrate/isopropylmalate dehydrogenase S96127_2256 PF00849 RNA pseudouridylate synthase S96127_2257 PF00293 NUDIX domain S96127_2259 PF04356 Protein of unknown function (DUF489) S96127_2260 PF00206 Lyase S96127_2260 PF08328 Adenylosuccinate lyase C-terminal S96127_2262 PF00072 Response regulator receiver domain S96127_2262 PF00486 Transcriptional regulatory protein, C terminal S96127_2263 PF08918 PhoQ Sensor S96127_2263 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_2264 PF08007 Cupin superfamily protein S96127_2265 PF01546 Peptidase family M20/M25/M40 S96127_2265 PF07687 Peptidase dimerisation domain S96127_2266 PF02146 Sir2 family S96127_2267 PF00480 ROK family S96127_2268 PF00480 ROK family S96127_2269 PF12704 MacB-like periplasmic core domain S96127_2269 PF02687 FtsX-like permease family S96127_2270 PF00005 ABC transporter S96127_2271 PF02687 FtsX-like permease family S96127_2271 PF12704 MacB-like periplasmic core domain S96127_2272 PF17757 UvrB interaction domain S96127_2272 PF02559 CarD-like/TRCF domain S96127_2272 PF00270 DEAD/DEAH box helicase S96127_2272 PF00271 Helicase conserved C-terminal domain S96127_2272 PF03461 TRCF domain S96127_2273 PF05433 Glycine zipper 2TM domain S96127_2274 PF00872 Transposase, Mutator family S96127_2277 PF07992 Pyridine nucleotide-disulphide oxidoreductase S96127_2278 PF05728 Uncharacterised protein family (UPF0227) S96127_2279 PF00933 Glycosyl hydrolase family 3 N terminal domain S96127_2280 PF01636 Phosphotransferase enzyme family S96127_2281 PF08139 Prokaryotic membrane lipoprotein lipid attachment site S96127_2281 PF13036 Peptidoglycan-synthase activator LpoB S96127_2282 PF07233 Protein of unknown function (DUF1425) S96127_2283 PF01230 HIT domain S96127_2284 PF08501 Shikimate dehydrogenase substrate binding domain S96127_2286 PF00367 phosphotransferase system, EIIB S96127_2286 PF02378 Phosphotransferase system, EIIC S96127_2287 PF01026 TatD related DNase S96127_2288 PF09115 DNA polymerase III, delta subunit, C terminal S96127_2289 PF02223 Thymidylate kinase S96127_2290 PF02618 YceG-like family S96127_2291 PF01063 Amino-transferase class IV S96127_2293 PF02801 Beta-ketoacyl synthase, C-terminal domain S96127_2293 PF00109 Beta-ketoacyl synthase, N-terminal domain S96127_2294 PF00550 Phosphopantetheine attachment site S96127_2296 PF00698 Acyl transferase domain S96127_2297 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal S96127_2297 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III S96127_2298 PF02504 Fatty acid synthesis protein S96127_2299 PF01783 Ribosomal L32p protein family S96127_2300 PF02620 Large ribosomal RNA subunit accumulation protein YceD S96127_2301 PF02545 Maf-like protein S96127_2302 PF00849 RNA pseudouridylate synthase S96127_2302 PF01479 S4 domain S96127_2303 PF10150 Ribonuclease E/G family S96127_2303 PF00575 S1 RNA binding domain S96127_2303 PF12111 Polyribonucleotide phosphorylase C terminal S96127_2304 PF00872 Transposase, Mutator family S96127_2305 PF03992 Antibiotic biosynthesis monooxygenase S96127_2307 PF01979 Amidohydrolase family S96127_2308 PF06183 DinI-like family S96127_2309 PF00872 Transposase, Mutator family S96127_2318 PF01370 NAD dependent epimerase/dehydratase family S96127_2319 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III S96127_2319 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal S96127_2320 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal S96127_2320 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III S96127_2323 PF05962 HutD S96127_2324 PF01979 Amidohydrolase family S96127_2325 PF07702 UTRA domain S96127_2325 PF00392 Bacterial regulatory proteins, gntR family S96127_2326 PF01979 Amidohydrolase family S96127_2328 PF00267 Gram-negative porin S96127_2329 PF01695 IstB-like ATP binding protein S96127_2330 PF02796 Helix-turn-helix domain of resolvase S96127_2330 PF00665 Integrase core domain S96127_2331 PF00267 Gram-negative porin S96127_2332 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family S96127_2333 PF04996 Succinylarginine dihydrolase S96127_2334 PF00171 Aldehyde dehydrogenase family S96127_2335 PF04958 Arginine N-succinyltransferase beta subunit S96127_2336 PF00202 Aminotransferase class-III S96127_2337 PF00392 Bacterial regulatory proteins, gntR family S96127_2337 PF00155 Aminotransferase class I and II S96127_2339 PF00672 HAMP domain S96127_2339 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term S96127_2339 PF07730 Histidine kinase S96127_2339 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_2340 PF01699 Sodium/calcium exchanger protein S96127_2341 PF02562 PhoH-like protein S96127_2344 PF13994 PgaD-like protein S96127_2345 PF00535 Glycosyl transferase family 2 S96127_2346 PF14883 Hypothetical glycosyl hydrolase family 13 S96127_2346 PF01522 Polysaccharide deacetylase S96127_2348 PF00557 Metallopeptidase family M24 S96127_2349 PF03848 Tellurite resistance protein TehB S96127_2349 PF09313 Domain of unknown function (DUF1971) S96127_2351 PF00578 AhpC/TSA family S96127_2352 PF00005 ABC transporter S96127_2352 PF12704 MacB-like periplasmic core domain S96127_2352 PF02687 FtsX-like permease family S96127_2354 PF00005 ABC transporter S96127_2354 PF12704 MacB-like periplasmic core domain S96127_2354 PF02687 FtsX-like permease family S96127_2356 PF10634 Fe2+ transport protein S96127_2357 PF03239 Iron permease FTR1 family S96127_2359 PF04960 Glutaminase S96127_2361 PF00455 DeoR C terminal sensor domain S96127_2361 PF08220 DeoR-like helix-turn-helix domain S96127_2362 PF00324 Amino acid permease S96127_2363 PF00155 Aminotransferase class I and II S96127_2364 PF02508 Rnf-Nqr subunit, membrane protein S96127_2366 PF02796 Helix-turn-helix domain of resolvase S96127_2366 PF00665 Integrase core domain S96127_2367 PF01695 IstB-like ATP binding protein S96127_2368 PF04909 Amidohydrolase S96127_2369 PF07690 Major Facilitator Superfamily S96127_2372 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_2372 PF03466 LysR substrate binding domain S96127_2373 PF03328 HpcH/HpaI aldolase/citrate lyase family S96127_2374 PF01575 MaoC like domain S96127_2375 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain S96127_2375 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain S96127_2377 PF00072 Response regulator receiver domain S96127_2377 PF00196 Bacterial regulatory proteins, luxR family S96127_2378 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_2378 PF00989 PAS fold S96127_2378 PF00497 Bacterial extracellular solute-binding proteins, family 3 S96127_2378 PF01627 Hpt domain S96127_2378 PF00512 His Kinase A (phospho-acceptor) domain S96127_2378 PF00072 Response regulator receiver domain S96127_2382 PF02753 Pili assembly chaperone PapD, C-terminal domain S96127_2382 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain S96127_2383 PF13953 PapC C-terminal domain S96127_2383 PF13954 PapC N-terminal domain S96127_2383 PF00577 Outer membrane usher protein S96127_2385 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain S96127_2385 PF02753 Pili assembly chaperone PapD, C-terminal domain S96127_2386 PF13356 Arm DNA-binding domain S96127_2386 PF00589 Phage integrase family S96127_2387 PF00425 chorismate binding enzyme S96127_2388 PF07690 Major Facilitator Superfamily S96127_2389 PF00005 ABC transporter S96127_2389 PF00664 ABC transporter transmembrane region S96127_2390 PF00005 ABC transporter S96127_2390 PF00664 ABC transporter transmembrane region S96127_2390 PF04954 Siderophore-interacting protein S96127_2390 PF08021 Siderophore-interacting FAD-binding domain S96127_2392 PF00550 Phosphopantetheine attachment site S96127_2392 PF00501 AMP-binding enzyme S96127_2392 PF08242 Methyltransferase domain S96127_2392 PF00668 Condensation domain S96127_2393 PF02801 Beta-ketoacyl synthase, C-terminal domain S96127_2393 PF00698 Acyl transferase domain S96127_2393 PF00109 Beta-ketoacyl synthase, N-terminal domain S96127_2393 PF00668 Condensation domain S96127_2393 PF16197 Ketoacyl-synthetase C-terminal extension S96127_2393 PF00550 Phosphopantetheine attachment site S96127_2395 PF00975 Thioesterase domain S96127_2396 PF13193 AMP-binding enzyme C-terminal domain S96127_2396 PF00501 AMP-binding enzyme S96127_2397 PF07715 TonB-dependent Receptor Plug Domain S96127_2397 PF00593 TonB dependent receptor S96127_2404 PF01695 IstB-like ATP binding protein S96127_2405 PF00665 Integrase core domain S96127_2405 PF02796 Helix-turn-helix domain of resolvase S96127_2410 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath S96127_2411 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 S96127_2413 PF13953 PapC C-terminal domain S96127_2413 PF00577 Outer membrane usher protein S96127_2413 PF13954 PapC N-terminal domain S96127_2414 PF00872 Transposase, Mutator family S96127_2415 PF00577 Outer membrane usher protein S96127_2415 PF13953 PapC C-terminal domain S96127_2415 PF13954 PapC N-terminal domain S96127_2416 PF02753 Pili assembly chaperone PapD, C-terminal domain S96127_2416 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain S96127_2418 PF16970 Type-1 fimbrial protein, A S96127_2419 PF07724 AAA domain (Cdc48 subfamily) S96127_2419 PF17871 AAA lid domain S96127_2419 PF00004 ATPase family associated with various cellular activities (AAA) S96127_2419 PF10431 C-terminal, D2-small domain, of ClpB protein S96127_2420 PF05947 Type VI secretion system, TssF S96127_2430 PF13406 Transglycosylase SLT domain S96127_2433 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2434 PF00005 ABC transporter S96127_2436 PF05638 Type VI secretion system effector, Hcp S96127_2438 PF01568 Molydopterin dinucleotide binding domain S96127_2438 PF04879 Molybdopterin oxidoreductase Fe4S4 domain S96127_2438 PF00384 Molybdopterin oxidoreductase S96127_2439 PF12800 4Fe-4S binding domain S96127_2439 PF13247 4Fe-4S dicluster domain S96127_2440 PF04976 DMSO reductase anchor subunit (DmsC) S96127_2441 PF02613 Nitrate reductase delta subunit S96127_2443 PF05643 Putative bacterial lipoprotein (DUF799) S96127_2445 PF03783 Curli production assembly/transport component CsgG S96127_2448 PF01292 Prokaryotic cytochrome b561 S96127_2449 PF00155 Aminotransferase class I and II S96127_2450 PF07350 Protein of unknown function (DUF1479) S96127_2451 PF02685 Glucokinase S96127_2453 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_2453 PF03466 LysR substrate binding domain S96127_2454 PF00248 Aldo/keto reductase family S96127_2456 PF01566 Natural resistance-associated macrophage protein S96127_2457 PF07670 Nucleoside recognition S96127_2457 PF01773 Na+ dependent nucleoside transporter N-terminus S96127_2457 PF07662 Na+ dependent nucleoside transporter C-terminus S96127_2458 PF00749 tRNA synthetases class I (E and Q), catalytic domain S96127_2460 PF01797 Transposase IS200 like S96127_2464 PF12843 Putative quorum-sensing-regulated virulence factor S96127_2465 PF12826 Helix-hairpin-helix motif S96127_2465 PF03119 NAD-dependent DNA ligase C4 zinc finger domain S96127_2465 PF03120 NAD-dependent DNA ligase OB-fold domain S96127_2465 PF01653 NAD-dependent DNA ligase adenylation domain S96127_2465 PF00533 BRCA1 C Terminus (BRCT) domain S96127_2466 PF04354 ZipA, C-terminal FtsZ-binding domain S96127_2468 PF00291 Pyridoxal-phosphate dependent enzyme S96127_2469 PF00381 PTS HPr component phosphorylation site S96127_2470 PF02896 PEP-utilising enzyme, TIM barrel domain S96127_2470 PF05524 PEP-utilising enzyme, N-terminal S96127_2470 PF00391 PEP-utilising enzyme, mobile domain S96127_2471 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 S96127_2476 PF16527 Two-component sensor protein CpxA, periplasmic domain S96127_2476 PF00672 HAMP domain S96127_2476 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_2476 PF00512 His Kinase A (phospho-acceptor) domain S96127_2477 PF00486 Transcriptional regulatory protein, C terminal S96127_2477 PF00072 Response regulator receiver domain S96127_2478 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S96127_2479 PF12704 MacB-like periplasmic core domain S96127_2479 PF02687 FtsX-like permease family S96127_2479 PF00005 ABC transporter S96127_2480 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain S96127_2480 PF07992 Pyridine nucleotide-disulphide oxidoreductase S96127_2481 PF00474 Sodium:solute symporter family S96127_2483 PF00557 Metallopeptidase family M24 S96127_2484 PF00155 Aminotransferase class I and II S96127_2486 PF00512 His Kinase A (phospho-acceptor) domain S96127_2486 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_2486 PF00672 HAMP domain S96127_2487 PF00486 Transcriptional regulatory protein, C terminal S96127_2487 PF00072 Response regulator receiver domain S96127_2489 PF00291 Pyridoxal-phosphate dependent enzyme S96127_2490 PF00005 ABC transporter S96127_2491 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2492 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2494 PF07690 Major Facilitator Superfamily S96127_2495 PF01380 SIS domain S96127_2495 PF01418 Helix-turn-helix domain, rpiR family S96127_2496 PF04074 YhcH/YjgK/YiaL S96127_2497 PF00480 ROK family S96127_2498 PF12468 Type III secretion system leucine rich repeat protein S96127_2499 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase S96127_2500 PF00701 Dihydrodipicolinate synthetase family S96127_2501 PF04261 Dyp-type peroxidase family S96127_2503 PF06572 Protein of unknown function (DUF1131) S96127_2504 PF04076 Bacterial OB fold (BOF) protein S96127_2505 PF03212 Pertactin S96127_2505 PF16168 Adhesin of bacterial autotransporter system, probable stalk S96127_2505 PF03797 Autotransporter beta-domain S96127_2505 PF13018 Extended Signal Peptide of Type V secretion system S96127_2507 PF00583 Acetyltransferase (GNAT) family S96127_2508 PF01218 Coproporphyrinogen III oxidase S96127_2509 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 S96127_2510 PF03949 Malic enzyme, NAD binding domain S96127_2510 PF00390 Malic enzyme, N-terminal domain S96127_2510 PF01515 Phosphate acetyl/butaryl transferase S96127_2511 PF00293 NUDIX domain S96127_2512 PF03264 NapC/NirT cytochrome c family, N-terminal region S96127_2513 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) S96127_2515 PF00384 Molybdopterin oxidoreductase S96127_2515 PF10518 TAT (twin-arginine translocation) pathway signal sequence S96127_2515 PF04879 Molybdopterin oxidoreductase Fe4S4 domain S96127_2515 PF01568 Molydopterin dinucleotide binding domain S96127_2516 PF03927 NapD protein S96127_2517 PF12800 4Fe-4S binding domain S96127_2517 PF00037 4Fe-4S binding domain S96127_2517 PF13187 4Fe-4S dicluster domain S96127_2518 PF00072 Response regulator receiver domain S96127_2518 PF00196 Bacterial regulatory proteins, luxR family S96127_2520 PF00873 AcrB/AcrD/AcrF family S96127_2522 PF04307 LexA-binding, inner membrane-associated putative hydrolase S96127_2524 PF13186 Iron-sulfur cluster-binding domain S96127_2524 PF04055 Radical SAM superfamily S96127_2525 PF00884 Sulfatase S96127_2527 PF00005 ABC transporter S96127_2527 PF08402 TOBE domain S96127_2528 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2531 PF03960 ArsC family S96127_2532 PF01546 Peptidase family M20/M25/M40 S96127_2532 PF07687 Peptidase dimerisation domain S96127_2533 PF02557 D-alanyl-D-alanine carboxypeptidase S96127_2534 PF13980 Uncharacterised protein family (UPF0370) S96127_2535 PF08351 Domain of unknown function (DUF1726) S96127_2535 PF13718 GNAT acetyltransferase 2 S96127_2535 PF05127 Helicase S96127_2535 PF17176 tRNA-binding domain S96127_2536 PF04284 Protein of unknown function (DUF441) S96127_2537 PF04228 Putative neutral zinc metallopeptidase S96127_2538 PF01259 SAICAR synthetase S96127_2539 PF01797 Transposase IS200 like S96127_2541 PF06804 NlpB/DapX lipoprotein S96127_2542 PF00701 Dihydrodipicolinate synthetase family S96127_2543 PF01842 ACT domain S96127_2544 PF00578 AhpC/TSA family S96127_2549 PF01594 AI-2E family transporter S96127_2550 PF07720 Tetratricopeptide repeat S96127_2550 PF01435 Peptidase family M48 S96127_2551 PF03960 ArsC family S96127_2552 PF00308 Bacterial dnaA protein S96127_2553 PF01797 Transposase IS200 like S96127_2556 PF02769 AIR synthase related protein, C-terminal domain S96127_2556 PF00586 AIR synthase related protein, N-terminal domain S96127_2557 PF00551 Formyl transferase S96127_2558 PF13302 Acetyltransferase (GNAT) domain S96127_2561 PF00005 ABC transporter S96127_2562 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2563 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2564 PF13090 Polyphosphate kinase C-terminal domain 2 S96127_2564 PF17941 Polyphosphate kinase C-terminal domain 1 S96127_2564 PF13089 Polyphosphate kinase N-terminal domain S96127_2564 PF02503 Polyphosphate kinase middle domain S96127_2565 PF02541 Ppx/GppA phosphatase family S96127_2567 PF03448 MgtE intracellular N domain S96127_2567 PF01769 Divalent cation transporter S96127_2567 PF00571 CBS domain S96127_2568 PF00012 Hsp70 protein S96127_2569 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2570 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2572 PF00202 Aminotransferase class-III S96127_2573 PF00155 Aminotransferase class I and II S96127_2573 PF00392 Bacterial regulatory proteins, gntR family S96127_2574 PF08402 TOBE domain S96127_2574 PF00005 ABC transporter S96127_2575 PF13533 Biotin-lipoyl like S96127_2576 PF00873 AcrB/AcrD/AcrF family S96127_2577 PF00873 AcrB/AcrD/AcrF family S96127_2578 PF07690 Major Facilitator Superfamily S96127_2579 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_2579 PF00672 HAMP domain S96127_2579 PF00512 His Kinase A (phospho-acceptor) domain S96127_2580 PF00672 HAMP domain S96127_2580 PF00512 His Kinase A (phospho-acceptor) domain S96127_2580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_2581 PF00486 Transcriptional regulatory protein, C terminal S96127_2581 PF00072 Response regulator receiver domain S96127_2582 PF07411 Domain of unknown function (DUF1508) S96127_2583 PF16325 Peptidase family U32 C-terminal domain S96127_2583 PF01136 Peptidase family U32 S96127_2585 PF00781 Diacylglycerol kinase catalytic domain S96127_2590 PF08543 Phosphomethylpyrimidine kinase S96127_2593 PF00872 Transposase, Mutator family S96127_2596 PF05638 Type VI secretion system effector, Hcp S96127_2597 PF01797 Transposase IS200 like S96127_2599 PF00117 Glutamine amidotransferase class-I S96127_2599 PF00958 GMP synthase C terminal domain S96127_2599 PF02540 NAD synthase S96127_2600 PF00571 CBS domain S96127_2600 PF00478 IMP dehydrogenase / GMP reductase domain S96127_2601 PF13742 OB-fold nucleic acid binding domain S96127_2601 PF02601 Exonuclease VII, large subunit S96127_2603 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal S96127_2603 PF01926 50S ribosome-binding GTPase S96127_2605 PF13360 PQQ-like domain S96127_2606 PF09976 Tetratricopeptide repeat-like domain S96127_2607 PF13393 Histidyl-tRNA synthetase S96127_2607 PF03129 Anticodon binding domain S96127_2608 PF04551 GcpE protein S96127_2609 PF13464 Domain of unknown function (DUF4115) S96127_2611 PF04055 Radical SAM superfamily S96127_2612 PF00334 Nucleoside diphosphate kinase S96127_2614 PF03797 Autotransporter beta-domain S96127_2614 PF03212 Pertactin S96127_2614 PF16168 Adhesin of bacterial autotransporter system, probable stalk S96127_2615 PF16168 Adhesin of bacterial autotransporter system, probable stalk S96127_2615 PF03212 Pertactin S96127_2615 PF03797 Autotransporter beta-domain S96127_2617 PF07179 SseB protein N-terminal domain S96127_2617 PF14581 SseB protein C-terminal domain S96127_2618 PF12404 Peptidase S96127_2618 PF00883 Cytosol aminopeptidase family, catalytic domain S96127_2619 PF04384 Iron-sulphur cluster assembly S96127_2620 PF00111 2Fe-2S iron-sulfur cluster binding domain S96127_2621 PF00012 Hsp70 protein S96127_2622 PF07743 HSCB C-terminal oligomerisation domain S96127_2622 PF00226 DnaJ domain S96127_2623 PF01521 Iron-sulphur cluster biosynthesis S96127_2624 PF01592 NifU-like N terminal domain S96127_2625 PF00266 Aminotransferase class-V S96127_2626 PF02082 Transcriptional regulator S96127_2627 PF00588 SpoU rRNA Methylase family S96127_2628 PF00459 Inositol monophosphatase family S96127_2629 PF03824 High-affinity nickel-transport protein S96127_2630 PF06226 Protein of unknown function (DUF1007) S96127_2631 PF00874 PRD domain S96127_2632 PF12832 MFS_1 like family S96127_2633 PF13505 Outer membrane protein beta-barrel domain S96127_2635 PF00464 Serine hydroxymethyltransferase S96127_2636 PF00970 Oxidoreductase FAD-binding domain S96127_2636 PF00175 Oxidoreductase NAD-binding domain S96127_2636 PF00042 Globin S96127_2637 PF14502 Helix-turn-helix domain S96127_2637 PF14503 YhfZ C-terminal domain S96127_2638 PF14503 YhfZ C-terminal domain S96127_2638 PF14502 Helix-turn-helix domain S96127_2639 PF00543 Nitrogen regulatory protein P-II S96127_2640 PF02540 NAD synthase S96127_2640 PF00795 Carbon-nitrogen hydrolase S96127_2642 PF00158 Sigma-54 interaction domain S96127_2642 PF00072 Response regulator receiver domain S96127_2643 PF13942 YfhG lipoprotein S96127_2644 PF00512 His Kinase A (phospho-acceptor) domain S96127_2644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_2649 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain S96127_2649 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal S96127_2649 PF02769 AIR synthase related protein, C-terminal domain S96127_2650 PF00497 Bacterial extracellular solute-binding proteins, family 3 S96127_2650 PF01464 Transglycosylase SLT domain S96127_2651 PF14437 MafB19-like deaminase S96127_2653 PF01380 SIS domain S96127_2654 PF01380 SIS domain S96127_2654 PF01418 Helix-turn-helix domain, rpiR family S96127_2655 PF12838 4Fe-4S dicluster domain S96127_2656 PF01797 Transposase IS200 like S96127_2658 PF01648 4'-phosphopantetheinyl transferase superfamily S96127_2659 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ S96127_2660 PF02565 Recombination protein O C terminal S96127_2660 PF11967 Recombination protein O N terminal S96127_2661 PF01926 50S ribosome-binding GTPase S96127_2661 PF07650 KH domain S96127_2662 PF14622 Ribonuclease-III-like S96127_2662 PF00035 Double-stranded RNA binding motif S96127_2663 PF10502 Signal peptidase, peptidase S26 S96127_2664 PF06421 GTP-binding protein LepA C-terminus S96127_2664 PF03144 Elongation factor Tu domain 2 S96127_2664 PF00679 Elongation factor G C-terminus S96127_2664 PF00009 Elongation factor Tu GTP binding domain S96127_2667 PF17188 MucB/RseB C-terminal domain S96127_2667 PF03888 MucB/RseB N-terminal domain S96127_2668 PF03872 Anti sigma-E protein RseA, N-terminal domain S96127_2668 PF03873 Anti sigma-E protein RseA, C-terminal domain S96127_2669 PF08281 Sigma-70, region 4 S96127_2669 PF04542 Sigma-70 region 2 S96127_2670 PF00890 FAD binding domain S96127_2670 PF02910 Fumarate reductase flavoprotein C-term S96127_2671 PF05175 Methyltransferase small domain S96127_2672 PF00270 DEAD/DEAH box helicase S96127_2672 PF00271 Helicase conserved C-terminal domain S96127_2673 PF12796 Ankyrin repeats (3 copies) S96127_2676 PF01228 Glycine radical S96127_2677 PF03167 Uracil DNA glycosylase superfamily S96127_2678 PF01470 Pyroglutamyl peptidase S96127_2681 PF03746 LamB/YcsF family S96127_2682 PF02626 Carboxyltransferase domain, subdomain A and B S96127_2683 PF02682 Carboxyltransferase domain, subdomain C and D S96127_2684 PF01784 NIF3 (NGG1p interacting factor 3) S96127_2685 PF02112 cAMP phosphodiesterases class-II S96127_2686 PF03441 FAD binding domain of DNA photolyase S96127_2686 PF00875 DNA photolyase S96127_2687 PF08349 Protein of unknown function (DUF1722) S96127_2689 PF10725 Protein of unknown function (DUF2517) S96127_2692 PF03814 Potassium-transporting ATPase A subunit S96127_2695 PF02669 K+-transporting ATPase, c chain S96127_2696 PF13493 Domain of unknown function (DUF4118) S96127_2696 PF02702 Osmosensitive K+ channel His kinase sensor domain S96127_2696 PF13492 GAF domain S96127_2696 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_2696 PF00512 His Kinase A (phospho-acceptor) domain S96127_2697 PF00486 Transcriptional regulatory protein, C terminal S96127_2697 PF00072 Response regulator receiver domain S96127_2700 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain S96127_2700 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III S96127_2700 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II S96127_2700 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I S96127_2701 PF17206 SeqA protein N-terminal domain S96127_2701 PF03925 SeqA protein C-terminal domain S96127_2705 PF04794 YdjC-like protein S96127_2706 PF12833 Helix-turn-helix domain S96127_2706 PF07883 Cupin domain S96127_2707 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit S96127_2708 PF02378 Phosphotransferase system, EIIC S96127_2709 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit S96127_2711 PF02537 CrcB-like protein, Camphor Resistance (CrcB) S96127_2712 PF02537 CrcB-like protein, Camphor Resistance (CrcB) S96127_2713 PF02254 TrkA-N domain S96127_2713 PF07885 Ion channel S96127_2715 PF06411 HdeA/HdeB family S96127_2716 PF03824 High-affinity nickel-transport protein S96127_2717 PF03253 Urea transporter S96127_2718 PF01774 UreD urease accessory protein S96127_2719 PF02492 CobW/HypB/UreG, nucleotide-binding domain S96127_2720 PF01730 UreF S96127_2721 PF02814 UreE urease accessory protein, N-terminal domain S96127_2721 PF05194 UreE urease accessory protein, C-terminal domain S96127_2722 PF00449 Urease alpha-subunit, N-terminal domain S96127_2722 PF01979 Amidohydrolase family S96127_2723 PF00699 Urease beta subunit S96127_2724 PF00547 Urease, gamma subunit S96127_2726 PF00005 ABC transporter S96127_2727 PF00005 ABC transporter S96127_2728 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2728 PF12911 N-terminal TM domain of oligopeptide transport permease C S96127_2729 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle S96127_2731 PF00313 'Cold-shock' DNA-binding domain S96127_2733 PF06711 Protein of unknown function (DUF1198) S96127_2734 PF09400 Protein of unknown function (DUF2002) S96127_2735 PF06392 Acid shock protein repeat S96127_2737 PF07972 NrdI Flavodoxin like S96127_2738 PF08343 Ribonucleotide reductase N-terminal S96127_2738 PF02867 Ribonucleotide reductase, barrel domain S96127_2738 PF00317 Ribonucleotide reductase, all-alpha domain S96127_2739 PF00268 Ribonucleotide reductase, small chain S96127_2740 PF00005 ABC transporter S96127_2740 PF00571 CBS domain S96127_2741 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2742 PF04069 Substrate binding domain of ABC-type glycine betaine transport system S96127_2744 PF02796 Helix-turn-helix domain of resolvase S96127_2744 PF00665 Integrase core domain S96127_2745 PF01695 IstB-like ATP binding protein S96127_2746 PF00589 Phage integrase family S96127_2746 PF13356 Arm DNA-binding domain S96127_2747 PF01527 Transposase S96127_2748 PF00589 Phage integrase family S96127_2748 PF13356 Arm DNA-binding domain S96127_2752 PF12697 Alpha/beta hydrolase family S96127_2753 PF01402 Ribbon-helix-helix protein, copG family S96127_2755 PF00258 Flavodoxin S96127_2756 PF01475 Ferric uptake regulator family S96127_2757 PF03173 Putative carbohydrate binding domain S96127_2757 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain S96127_2757 PF00728 Glycosyl hydrolase family 20, catalytic domain S96127_2757 PF02838 Glycosyl hydrolase family 20, domain 2 S96127_2758 PF03173 Putative carbohydrate binding domain S96127_2758 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain S96127_2758 PF00728 Glycosyl hydrolase family 20, catalytic domain S96127_2758 PF02838 Glycosyl hydrolase family 20, domain 2 S96127_2759 PF03573 outer membrane porin, OprD family S96127_2760 PF00749 tRNA synthetases class I (E and Q), catalytic domain S96127_2760 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain S96127_2761 PF01797 Transposase IS200 like S96127_2763 PF02378 Phosphotransferase system, EIIC S96127_2763 PF00367 phosphotransferase system, EIIB S96127_2763 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 S96127_2764 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase S96127_2765 PF01979 Amidohydrolase family S96127_2766 PF01047 MarR family S96127_2766 PF00480 ROK family S96127_2767 PF13344 Haloacid dehalogenase-like hydrolase S96127_2768 PF00733 Asparagine synthase S96127_2768 PF13537 Glutamine amidotransferase domain S96127_2771 PF01494 FAD binding domain S96127_2772 PF00919 Uncharacterized protein family UPF0004 S96127_2772 PF04055 Radical SAM superfamily S96127_2772 PF01938 TRAM domain S96127_2773 PF02562 PhoH-like protein S96127_2774 PF02130 Uncharacterized protein family UPF0054 S96127_2775 PF00571 CBS domain S96127_2775 PF03471 Transporter associated domain S96127_2776 PF00795 Carbon-nitrogen hydrolase S96127_2777 PF00497 Bacterial extracellular solute-binding proteins, family 3 S96127_2778 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2779 PF00528 Binding-protein-dependent transport system inner membrane component S96127_2780 PF00005 ABC transporter S96127_2781 PF07295 Zinc-ribbon containing domain S96127_2782 PF13603 Leucyl-tRNA synthetase, Domain 2 S96127_2782 PF08264 Anticodon-binding domain of tRNA S96127_2782 PF00133 tRNA synthetases class I (I, L, M and V) S96127_2783 PF04390 Lipopolysaccharide-assembly S96127_2784 PF06144 DNA polymerase III, delta subunit S96127_2784 PF14840 Processivity clamp loader gamma complex DNA pol III C-term S96127_2785 PF01467 Cytidylyltransferase-like S96127_2787 PF02590 Predicted SPOUT methyltransferase S96127_2788 PF03717 Penicillin-binding Protein dimerisation domain S96127_2788 PF00905 Penicillin binding protein transpeptidase domain S96127_2789 PF01098 Cell cycle protein S96127_2790 PF05036 Sporulation related domain S96127_2790 PF03330 Lytic transglycolase S96127_2791 PF07943 Penicillin-binding protein 5, C-terminal domain S96127_2791 PF00768 D-alanyl-D-alanine carboxypeptidase S96127_2792 PF04359 Protein of unknown function (DUF493) S96127_2793 PF03099 Biotin/lipoate A/B protein ligase family S96127_2794 PF04055 Radical SAM superfamily S96127_2794 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family S96127_2795 PF02416 mttA/Hcf106 family S96127_2797 PF02537 CrcB-like protein, Camphor Resistance (CrcB) S96127_2798 PF00313 'Cold-shock' DNA-binding domain S96127_2799 PF00313 'Cold-shock' DNA-binding domain S96127_2800 PF00196 Bacterial regulatory proteins, luxR family S96127_2805 PF00005 ABC transporter S96127_2805 PF00664 ABC transporter transmembrane region S96127_2807 PF04962 KduI/IolB family S96127_2808 PF01261 Xylose isomerase-like TIM barrel S96127_2809 PF00294 pfkB family carbohydrate kinase S96127_2810 PF02894 Oxidoreductase family, C-terminal alpha/beta domain S96127_2810 PF01408 Oxidoreductase family, NAD-binding Rossmann fold S96127_2811 PF02653 Branched-chain amino acid transport system / permease component S96127_2812 PF00005 ABC transporter S96127_2813 PF13407 Periplasmic binding protein domain S96127_2814 PF01408 Oxidoreductase family, NAD-binding Rossmann fold S96127_2814 PF02894 Oxidoreductase family, C-terminal alpha/beta domain S96127_2815 PF02894 Oxidoreductase family, C-terminal alpha/beta domain S96127_2815 PF01408 Oxidoreductase family, NAD-binding Rossmann fold S96127_2816 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain S96127_2816 PF00205 Thiamine pyrophosphate enzyme, central domain S96127_2816 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain S96127_2817 PF00171 Aldehyde dehydrogenase family S96127_2821 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain S96127_2821 PF07703 Alpha-2-macroglobulin bait region domain S96127_2821 PF00207 Alpha-2-macroglobulin family S96127_2821 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain S96127_2821 PF17962 Bacterial macroglobulin domain 6 S96127_2821 PF01835 MG2 domain S96127_2821 PF11974 Bacterial alpha-2-macroglobulin MG3 domain S96127_2822 PF01797 Transposase IS200 like S96127_2824 PF00912 Transglycosylase S96127_2824 PF00905 Penicillin binding protein transpeptidase domain S96127_2824 PF06832 Penicillin-Binding Protein C-terminus Family S96127_2825 PF13693 Winged helix-turn-helix DNA-binding S96127_2828 PF05638 Type VI secretion system effector, Hcp S96127_2831 PF03212 Pertactin S96127_2831 PF16168 Adhesin of bacterial autotransporter system, probable stalk S96127_2831 PF13018 Extended Signal Peptide of Type V secretion system S96127_2831 PF03797 Autotransporter beta-domain S96127_2833 PF08007 Cupin superfamily protein S96127_2834 PF00872 Transposase, Mutator family S96127_2837 PF00933 Glycosyl hydrolase family 3 N terminal domain S96127_2837 PF01915 Glycosyl hydrolase family 3 C-terminal domain S96127_2837 PF14310 Fibronectin type III-like domain S96127_2839 PF00248 Aldo/keto reductase family S96127_2840 PF00248 Aldo/keto reductase family S96127_2841 PF03466 LysR substrate binding domain S96127_2841 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_2842 PF00665 Integrase core domain S96127_2842 PF02796 Helix-turn-helix domain of resolvase S96127_2843 PF01695 IstB-like ATP binding protein S96127_2846 PF00782 Dual specificity phosphatase, catalytic domain S96127_2847 PF12146 Serine aminopeptidase, S33 S96127_2847 PF12147 Putative methyltransferase S96127_2848 PF01553 Acyltransferase S96127_2850 PF01066 CDP-alcohol phosphatidyltransferase S96127_2858 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain S96127_2858 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain S96127_2860 PF01797 Transposase IS200 like S96127_2862 PF01406 tRNA synthetases class I (C) catalytic domain S96127_2862 PF09190 DALR domain S96127_2863 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD S96127_2864 PF00149 Calcineurin-like phosphoesterase S96127_2865 PF00731 AIR carboxylase S96127_2866 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain S96127_2866 PF02222 ATP-grasp domain S96127_2868 PF00005 ABC transporter S96127_2869 PF13472 GDSL-like Lipase/Acylhydrolase family S96127_2870 PF00106 short chain dehydrogenase S96127_2871 PF00085 Thioredoxin S96127_2872 PF01145 SPFH domain / Band 7 family S96127_2872 PF16200 C-terminal region of band_7 S96127_2873 PF01957 NfeD-like C-terminal, partner-binding S96127_2874 PF13411 MerR HTH family regulatory protein S96127_2875 PF00403 Heavy-metal-associated domain S96127_2876 PF01963 TraB family S96127_2877 PF04073 Aminoacyl-tRNA editing domain S96127_2880 PF02872 5'-nucleotidase, C-terminal domain S96127_2880 PF00149 Calcineurin-like phosphoesterase S96127_2881 PF00149 Calcineurin-like phosphoesterase S96127_2881 PF02872 5'-nucleotidase, C-terminal domain S96127_2882 PF00149 Calcineurin-like phosphoesterase S96127_2882 PF02872 5'-nucleotidase, C-terminal domain S96127_2883 PF07690 Major Facilitator Superfamily S96127_2884 PF02254 TrkA-N domain S96127_2884 PF00999 Sodium/hydrogen exchanger family S96127_2885 PF00294 pfkB family carbohydrate kinase S96127_2886 PF02706 Chain length determinant protein S96127_2887 PF00872 Transposase, Mutator family S96127_2888 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain S96127_2888 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I S96127_2888 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II S96127_2888 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III S96127_2889 PF00535 Glycosyl transferase family 2 S96127_2890 PF00483 Nucleotidyl transferase S96127_2890 PF01050 Mannose-6-phosphate isomerase S96127_2891 PF01370 NAD dependent epimerase/dehydratase family S96127_2892 PF16363 GDP-mannose 4,6 dehydratase S96127_2893 PF16363 GDP-mannose 4,6 dehydratase S96127_2894 PF00534 Glycosyl transferases group 1 S96127_2894 PF13439 Glycosyltransferase Family 4 S96127_2901 PF01370 NAD dependent epimerase/dehydratase family S96127_2902 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family S96127_2903 PF16363 GDP-mannose 4,6 dehydratase S96127_2904 PF16363 GDP-mannose 4,6 dehydratase S96127_2905 PF00483 Nucleotidyl transferase S96127_2906 PF00111 2Fe-2S iron-sulfur cluster binding domain S96127_2906 PF00970 Oxidoreductase FAD-binding domain S96127_2906 PF00175 Oxidoreductase NAD-binding domain S96127_2907 PF00762 Ferrochelatase S96127_2908 PF05191 Adenylate kinase, active site lid S96127_2909 PF00183 Hsp90 protein S96127_2909 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_2911 PF13662 Toprim domain S96127_2911 PF02132 RecR protein S96127_2912 PF02575 YbaB/EbfC DNA-binding family S96127_2913 PF12169 DNA polymerase III subunits gamma and tau domain III S96127_2913 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding S96127_2913 PF12170 DNA polymerase III tau subunit V interacting with alpha S96127_2915 PF00156 Phosphoribosyl transferase domain S96127_2919 PF10689 Protein of unknown function (DUF2496) S96127_2920 PF12795 Mechanosensitive ion channel porin domain S96127_2920 PF00924 Mechanosensitive ion channel S96127_2920 PF12794 Mechanosensitive ion channel inner membrane domain 1 S96127_2921 PF02635 DsrE/DsrF-like family S96127_2922 PF08361 MAATS-type transcriptional repressor, C-terminal region S96127_2922 PF00440 Bacterial regulatory proteins, tetR family S96127_2923 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S96127_2923 PF00529 HlyD membrane-fusion protein of T1SS S96127_2924 PF00873 AcrB/AcrD/AcrF family S96127_2925 PF01197 Ribosomal protein L31 S96127_2927 PF10757 Biofilm formation regulator YbaJ S96127_2928 PF05321 Haemolysin expression modulating protein S96127_2929 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain S96127_2930 PF09619 Type III secretion system lipoprotein chaperone (YscW) S96127_2933 PF00909 Ammonium Transporter Family S96127_2934 PF00543 Nitrogen regulatory protein P-II S96127_2935 PF00664 ABC transporter transmembrane region S96127_2935 PF00005 ABC transporter S96127_2936 PF00664 ABC transporter transmembrane region S96127_2936 PF00005 ABC transporter S96127_2937 PF13404 AsnC-type helix-turn-helix domain S96127_2937 PF01037 Lrp/AsnC ligand binding domain S96127_2938 PF00291 Pyridoxal-phosphate dependent enzyme S96127_2940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle S96127_2940 PF12793 Sugar transport-related sRNA regulator N-term S96127_2941 PF06508 Queuosine biosynthesis protein QueC S96127_2944 PF13145 PPIC-type PPIASE domain S96127_2945 PF00216 Bacterial DNA-binding protein S96127_2946 PF05362 Lon protease (S16) C-terminal proteolytic domain S96127_2946 PF00004 ATPase family associated with various cellular activities (AAA) S96127_2946 PF02190 ATP-dependent protease La (LON) substrate-binding domain S96127_2947 PF10431 C-terminal, D2-small domain, of ClpB protein S96127_2947 PF06689 ClpX C4-type zinc finger S96127_2947 PF07724 AAA domain (Cdc48 subfamily) S96127_2948 PF00574 Clp protease S96127_2949 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase S96127_2949 PF05698 Bacterial trigger factor protein (TF) C-terminus S96127_2949 PF05697 Bacterial trigger factor protein (TF) S96127_2950 PF01722 BolA-like protein S96127_2951 PF03923 Uncharacterized lipoprotein S96127_2951 PF08139 Prokaryotic membrane lipoprotein lipid attachment site S96127_2952 PF07690 Major Facilitator Superfamily S96127_2953 PF03502 Nucleoside-specific channel-forming protein, Tsx S96127_2954 PF00116 Cytochrome C oxidase subunit II, periplasmic domain S96127_2954 PF06481 COX Aromatic Rich Motif S96127_2955 PF00115 Cytochrome C and Quinol oxidase polypeptide I S96127_2956 PF00510 Cytochrome c oxidase subunit III S96127_2957 PF03626 Prokaryotic Cytochrome C oxidase subunit IV S96127_2958 PF01040 UbiA prenyltransferase family S96127_2959 PF07690 Major Facilitator Superfamily S96127_2960 PF04461 Protein of unknown function (DUF520) S96127_2961 PF08546 Ketopantoate reductase PanE/ApbA C terminal S96127_2961 PF02558 Ketopantoate reductase PanE/ApbA S96127_2962 PF01965 DJ-1/PfpI family S96127_2963 PF02568 Thiamine biosynthesis protein (ThiI) S96127_2963 PF02926 THUMP domain S96127_2964 PF02609 Exonuclease VII small subunit S96127_2965 PF00348 Polyprenyl synthetase S96127_2966 PF13292 1-deoxy-D-xylulose-5-phosphate synthase S96127_2966 PF02779 Transketolase, pyrimidine binding domain S96127_2966 PF02780 Transketolase, C-terminal domain S96127_2969 PF04608 Phosphatidylglycerophosphatase A S96127_2970 PF00586 AIR synthase related protein, N-terminal domain S96127_2970 PF02769 AIR synthase related protein, C-terminal domain S96127_2971 PF01029 NusB family S96127_2972 PF00885 6,7-dimethyl-8-ribityllumazine synthase S96127_2973 PF01872 RibD C-terminal domain S96127_2973 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region S96127_2974 PF03477 ATP cone domain S96127_2977 PF01797 Transposase IS200 like S96127_2981 PF07549 SecD/SecF GG Motif S96127_2981 PF02355 Protein export membrane protein S96127_2982 PF07549 SecD/SecF GG Motif S96127_2982 PF13721 SecD export protein N-terminal TM region S96127_2982 PF02355 Protein export membrane protein S96127_2983 PF02699 Preprotein translocase subunit S96127_2984 PF01702 Queuine tRNA-ribosyltransferase S96127_2985 PF02547 Queuosine biosynthesis protein S96127_2986 PF04336 Acyl carrier protein phosphodiesterase S96127_2987 PF10417 C-terminal domain of 1-Cys peroxiredoxin S96127_2987 PF00578 AhpC/TSA family S96127_2992 PF00128 Alpha amylase, catalytic domain S96127_2992 PF02903 Alpha amylase, N-terminal ig-like domain S96127_2993 PF00324 Amino acid permease S96127_2994 PF05525 Branched-chain amino acid transport protein S96127_2995 PF12849 PBP superfamily domain S96127_2996 PF00989 PAS fold S96127_2996 PF00512 His Kinase A (phospho-acceptor) domain S96127_2996 PF11808 Phosphate regulon sensor protein PhoR S96127_2996 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_2997 PF00072 Response regulator receiver domain S96127_2997 PF00486 Transcriptional regulatory protein, C terminal S96127_2999 PF00149 Calcineurin-like phosphoesterase S96127_2999 PF12320 Type 5 capsule protein repressor C-terminal domain S96127_3000 PF13476 AAA domain S96127_3001 PF00480 ROK family S96127_3002 PF04381 Putative exonuclease, RdgC S96127_3003 PF06865 Pyrimidine/purine nucleoside phosphorylase S96127_3004 PF01202 Shikimate kinase S96127_3006 PF08241 Methyltransferase domain S96127_3008 PF07317 Flagellar regulator YcgR S96127_3008 PF07238 PilZ domain S96127_3009 PF00171 Aldehyde dehydrogenase family S96127_3010 PF01472 PUA domain S96127_3010 PF00696 Amino acid kinase family S96127_3011 PF07417 Sigma factor-binding transcriptional regulator Crl S96127_3012 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) S96127_3013 PF00156 Phosphoribosyl transferase domain S96127_3016 PF03466 LysR substrate binding domain S96127_3016 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_3017 PF01546 Peptidase family M20/M25/M40 S96127_3017 PF07687 Peptidase dimerisation domain S96127_3018 PF11798 IMS family HHH motif S96127_3018 PF11799 impB/mucB/samB family C-terminal domain S96127_3018 PF00817 impB/mucB/samB family S96127_3019 PF03009 Glycerophosphoryl diester phosphodiesterase family S96127_3021 PF02424 ApbE family S96127_3022 PF00970 Oxidoreductase FAD-binding domain S96127_3022 PF00111 2Fe-2S iron-sulfur cluster binding domain S96127_3022 PF00175 Oxidoreductase NAD-binding domain S96127_3023 PF02508 Rnf-Nqr subunit, membrane protein S96127_3024 PF02508 Rnf-Nqr subunit, membrane protein S96127_3025 PF04205 FMN-binding domain S96127_3026 PF03116 NQR2, RnfD, RnfE family S96127_3027 PF11973 NQRA C-terminal domain S96127_3027 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) S96127_3028 PF03734 L,D-transpeptidase catalytic domain S96127_3029 PF13230 Glutamine amidotransferases class-II S96127_3030 PF13580 SIS domain S96127_3031 PF00441 Acyl-CoA dehydrogenase, C-terminal domain S96127_3031 PF09317 Domain of unknown function (DUF1974) S96127_3031 PF02771 Acyl-CoA dehydrogenase, N-terminal domain S96127_3033 PF18254 HMW1 domain 2 S96127_3033 PF18071 HMW1C N-terminal S96127_3035 PF05860 haemagglutination activity domain S96127_3036 PF08479 POTRA domain, ShlB-type S96127_3036 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB S96127_3039 PF07687 Peptidase dimerisation domain S96127_3039 PF01546 Peptidase family M20/M25/M40 S96127_3040 PF00266 Aminotransferase class-V S96127_3041 PF00005 ABC transporter S96127_3042 PF00528 Binding-protein-dependent transport system inner membrane component S96127_3043 PF00528 Binding-protein-dependent transport system inner membrane component S96127_3044 PF00497 Bacterial extracellular solute-binding proteins, family 3 S96127_3048 PF01425 Amidase S96127_3050 PF07690 Major Facilitator Superfamily S96127_3051 PF03591 AzlC protein S96127_3052 PF05437 Branched-chain amino acid transport protein (AzlD) S96127_3053 PF01047 MarR family S96127_3054 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S96127_3054 PF00529 HlyD membrane-fusion protein of T1SS S96127_3055 PF07690 Major Facilitator Superfamily S96127_3056 PF08032 RNA 2'-O ribose methyltransferase substrate binding S96127_3056 PF00588 SpoU rRNA Methylase family S96127_3057 PF00085 Thioredoxin S96127_3058 PF03942 DTW domain S96127_3059 PF13380 CoA binding domain S96127_3059 PF00583 Acetyltransferase (GNAT) family S96127_3059 PF13607 Succinyl-CoA ligase like flavodoxin domain S96127_3060 PF13091 PLD-like domain S96127_3061 PF10043 Predicted periplasmic lipoprotein (DUF2279) S96127_3063 PF10431 C-terminal, D2-small domain, of ClpB protein S96127_3063 PF00004 ATPase family associated with various cellular activities (AAA) S96127_3063 PF07724 AAA domain (Cdc48 subfamily) S96127_3063 PF02861 Clp amino terminal domain, pathogenicity island component S96127_3063 PF17871 AAA lid domain S96127_3064 PF02578 Multi-copper polyphenol oxidoreductase laccase S96127_3065 PF01479 S4 domain S96127_3065 PF00849 RNA pseudouridylate synthase S96127_3066 PF13525 Outer membrane lipoprotein S96127_3067 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein S96127_3068 PF01797 Transposase IS200 like S96127_3070 PF00800 Prephenate dehydratase S96127_3070 PF01817 Chorismate mutase type II S96127_3071 PF02796 Helix-turn-helix domain of resolvase S96127_3071 PF00665 Integrase core domain S96127_3072 PF01695 IstB-like ATP binding protein S96127_3073 PF01817 Chorismate mutase type II S96127_3073 PF00800 Prephenate dehydratase S96127_3074 PF01817 Chorismate mutase type II S96127_3074 PF02153 Prephenate dehydrogenase S96127_3075 PF00793 DAHP synthetase I family S96127_3076 PF00072 Response regulator receiver domain S96127_3076 PF04397 LytTr DNA-binding domain S96127_3077 PF03605 Anaerobic c4-dicarboxylate membrane transporter S96127_3078 PF03605 Anaerobic c4-dicarboxylate membrane transporter S96127_3079 PF03605 Anaerobic c4-dicarboxylate membrane transporter S96127_3080 PF04338 Protein of unknown function, DUF481 S96127_3081 PF01797 Transposase IS200 like S96127_3083 PF01245 Ribosomal protein L19 S96127_3084 PF01746 tRNA (Guanine-1)-methyltransferase S96127_3085 PF01782 RimM N-terminal domain S96127_3085 PF05239 PRC-barrel domain S96127_3086 PF00886 Ribosomal protein S16 S96127_3087 PF00448 SRP54-type protein, GTPase domain S96127_3087 PF02978 Signal peptide binding domain S96127_3087 PF02881 SRP54-type protein, helical bundle domain S96127_3088 PF01578 Cytochrome C assembly protein S96127_3089 PF00571 CBS domain S96127_3089 PF03471 Transporter associated domain S96127_3089 PF01595 Cyclin M transmembrane N-terminal domain S96127_3092 PF02664 S-Ribosylhomocysteinase (LuxS) S96127_3093 PF04262 Glutamate-cysteine ligase S96127_3094 PF09335 SNARE associated Golgi protein S96127_3095 PF13419 Haloacid dehalogenase-like hydrolase S96127_3096 PF02599 Global regulator protein family S96127_3097 PF02272 DHHA1 domain S96127_3097 PF01411 tRNA synthetases class II (A) S96127_3097 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain S96127_3098 PF02631 RecX family S96127_3099 PF00154 recA bacterial DNA recombination protein S96127_3100 PF02464 Competence-damaged protein S96127_3101 PF07690 Major Facilitator Superfamily S96127_3105 PF00370 FGGY family of carbohydrate kinases, N-terminal domain S96127_3105 PF02782 FGGY family of carbohydrate kinases, C-terminal domain S96127_3106 PF02779 Transketolase, pyrimidine binding domain S96127_3106 PF02780 Transketolase, C-terminal domain S96127_3107 PF00456 Transketolase, thiamine diphosphate binding domain S96127_3108 PF02653 Branched-chain amino acid transport system / permease component S96127_3109 PF00005 ABC transporter S96127_3111 PF13407 Periplasmic binding protein domain S96127_3112 PF00141 Peroxidase S96127_3113 PF07361 Cytochrome b562 S96127_3114 PF01292 Prokaryotic cytochrome b561 S96127_3116 PF02613 Nitrate reductase delta subunit S96127_3117 PF04976 DMSO reductase anchor subunit (DmsC) S96127_3118 PF12800 4Fe-4S binding domain S96127_3118 PF13247 4Fe-4S dicluster domain S96127_3119 PF04879 Molybdopterin oxidoreductase Fe4S4 domain S96127_3119 PF00384 Molybdopterin oxidoreductase S96127_3119 PF01568 Molydopterin dinucleotide binding domain S96127_3120 PF00596 Class II Aldolase and Adducin N-terminal domain S96127_3121 PF00455 DeoR C terminal sensor domain S96127_3121 PF08220 DeoR-like helix-turn-helix domain S96127_3124 PF01797 Transposase IS200 like S96127_3125 PF00005 ABC transporter S96127_3126 PF02653 Branched-chain amino acid transport system / permease component S96127_3127 PF02653 Branched-chain amino acid transport system / permease component S96127_3128 PF01261 Xylose isomerase-like TIM barrel S96127_3129 PF02782 FGGY family of carbohydrate kinases, C-terminal domain S96127_3129 PF00370 FGGY family of carbohydrate kinases, N-terminal domain S96127_3130 PF05683 Fumarase C-terminus S96127_3130 PF05681 Fumarate hydratase (Fumerase) S96127_3132 PF00557 Metallopeptidase family M24 S96127_3135 PF07715 TonB-dependent Receptor Plug Domain S96127_3135 PF00593 TonB dependent receptor S96127_3137 PF03150 Di-haem cytochrome c peroxidase S96127_3137 PF00034 Cytochrome c S96127_3137 PF14376 Haem-binding domain S96127_3138 PF00497 Bacterial extracellular solute-binding proteins, family 3 S96127_3141 PF01022 Bacterial regulatory protein, arsR family S96127_3142 PF02040 Arsenical pump membrane protein S96127_3143 PF13936 Helix-turn-helix domain S96127_3143 PF04198 Putative sugar-binding domain S96127_3144 PF02734 DAK2 domain S96127_3145 PF02733 Dak1 domain S96127_3147 PF08240 Alcohol dehydrogenase GroES-like domain S96127_3147 PF00107 Zinc-binding dehydrogenase S96127_3148 PF02502 Ribose/Galactose Isomerase S96127_3151 PF05192 MutS domain III S96127_3151 PF01624 MutS domain I S96127_3151 PF05190 MutS family domain IV S96127_3151 PF05188 MutS domain II S96127_3151 PF00488 MutS domain V S96127_3152 PF00140 Sigma-70 factor, region 1.2 S96127_3152 PF04539 Sigma-70 region 3 S96127_3152 PF04545 Sigma-70, region 4 S96127_3152 PF04542 Sigma-70 region 2 S96127_3153 PF01551 Peptidase family M23 S96127_3153 PF01476 LysM domain S96127_3155 PF01975 Survival protein SurE S96127_3156 PF01142 tRNA pseudouridine synthase D (TruD) S96127_3157 PF02542 YgbB family S96127_3158 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase S96127_3159 PF04977 Septum formation initiator S96127_3160 PF12084 Protein of unknown function (DUF3561) S96127_3162 PF00009 Elongation factor Tu GTP binding domain S96127_3163 PF01507 Phosphoadenosine phosphosulfate reductase family S96127_3164 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases S96127_3164 PF10414 Sirohaem synthase dimerisation region S96127_3164 PF14824 Sirohaem biosynthesis protein central S96127_3168 PF01507 Phosphoadenosine phosphosulfate reductase family S96127_3169 PF01507 Phosphoadenosine phosphosulfate reductase family S96127_3170 PF01077 Nitrite and sulphite reductase 4Fe-4S domain S96127_3170 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain S96127_3171 PF00667 FAD binding domain S96127_3171 PF00175 Oxidoreductase NAD-binding domain S96127_3171 PF00258 Flavodoxin S96127_3172 PF01242 6-pyruvoyl tetrahydropterin synthase S96127_3173 PF04055 Radical SAM superfamily S96127_3174 PF00080 Copper/zinc superoxide dismutase (SODC) S96127_3175 PF03952 Enolase, N-terminal domain S96127_3175 PF00113 Enolase, C-terminal TIM barrel domain S96127_3176 PF06418 CTP synthase N-terminus S96127_3176 PF00117 Glutamine amidotransferase class-I S96127_3177 PF03819 MazG nucleotide pyrophosphohydrolase domain S96127_3178 PF02824 TGS domain S96127_3178 PF04607 Region found in RelA / SpoT proteins S96127_3178 PF13291 ACT domain S96127_3179 PF05958 tRNA (Uracil-5-)-methyltransferase S96127_3179 PF01938 TRAM domain S96127_3180 PF00512 His Kinase A (phospho-acceptor) domain S96127_3180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_3180 PF00672 HAMP domain S96127_3180 PF01627 Hpt domain S96127_3180 PF00072 Response regulator receiver domain S96127_3180 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) S96127_3181 PF00595 PDZ domain S96127_3182 PF13286 Phosphohydrolase-associated domain S96127_3182 PF01966 HD domain S96127_3183 PF01048 Phosphorylase superfamily S96127_3184 PF01497 Periplasmic binding protein S96127_3185 PF03458 UPF0126 domain S96127_3186 PF01521 Iron-sulphur cluster biosynthesis S96127_3187 PF00654 Voltage gated chloride channel S96127_3189 PF00202 Aminotransferase class-III S96127_3190 PF01032 FecCD transport family S96127_3191 PF01497 Periplasmic binding protein S96127_3192 PF00005 ABC transporter S96127_3193 PF14814 Bifunctional transglycosylase second domain S96127_3193 PF00905 Penicillin binding protein transpeptidase domain S96127_3193 PF00912 Transglycosylase S96127_3193 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal S96127_3194 PF08482 ATP-dependent helicase C-terminal S96127_3194 PF00271 Helicase conserved C-terminal domain S96127_3194 PF04408 Helicase associated domain (HA2) S96127_3194 PF00270 DEAD/DEAH box helicase S96127_3195 PF02834 LigT like Phosphoesterase S96127_3196 PF03749 Sugar fermentation stimulation protein RE domain S96127_3196 PF17746 SfsA N-terminal OB domain S96127_3197 PF01258 Prokaryotic dksA/traR C4-type zinc finger S96127_3198 PF00749 tRNA synthetases class I (E and Q), catalytic domain S96127_3199 PF01743 Poly A polymerase head domain S96127_3199 PF12627 Probable RNA and SrmB- binding site of polymerase A S96127_3199 PF12626 Polymerase A arginine-rich C-terminus S96127_3200 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) S96127_3201 PF02548 Ketopantoate hydroxymethyltransferase S96127_3202 PF02569 Pantoate-beta-alanine ligase S96127_3204 PF02261 Aspartate decarboxylase S96127_3205 PF01522 Polysaccharide deacetylase S96127_3207 PF01061 ABC-2 type transporter S96127_3208 PF00005 ABC transporter S96127_3209 PF00484 Carbonic anhydrase S96127_3210 PF00156 Phosphoribosyl transferase domain S96127_3211 PF10518 TAT (twin-arginine translocation) pathway signal sequence S96127_3211 PF07731 Multicopper oxidase S96127_3211 PF07732 Multicopper oxidase S96127_3211 PF00394 Multicopper oxidase S96127_3212 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) S96127_3213 PF17284 Spermidine synthase tetramerisation domain S96127_3214 PF02675 S-adenosylmethionine decarboxylase S96127_3215 PF00892 EamA-like transporter family S96127_3216 PF06062 Uncharacterised protein family (UPF0231) S96127_3217 PF11791 Aconitate B N-terminal domain S96127_3217 PF00330 Aconitase family (aconitate hydratase) S96127_3217 PF06434 Aconitate hydratase 2 N-terminus S96127_3218 PF01797 Transposase IS200 like S96127_3220 PF07992 Pyridine nucleotide-disulphide oxidoreductase S96127_3220 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain S96127_3221 PF02817 e3 binding domain S96127_3221 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) S96127_3221 PF00364 Biotin-requiring enzyme S96127_3222 PF17831 Pyruvate dehydrogenase E1 component middle domain S96127_3222 PF00456 Transketolase, thiamine diphosphate binding domain S96127_3223 PF00392 Bacterial regulatory proteins, gntR family S96127_3223 PF07729 FCD domain S96127_3224 PF00324 Amino acid permease S96127_3225 PF17113 Regulatory signalling modulator protein AmpE S96127_3226 PF01510 N-acetylmuramoyl-L-alanine amidase S96127_3227 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain S96127_3227 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain S96127_3228 PF07963 Prokaryotic N-terminal methylation motif S96127_3229 PF00437 Type II/IV secretion system protein S96127_3229 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain S96127_3230 PF00482 Type II secretion system (T2SS), protein F S96127_3231 PF00478 IMP dehydrogenase / GMP reductase domain S96127_3232 PF01121 Dephospho-CoA kinase S96127_3233 PF07072 Cell division protein S96127_3234 PF03884 DNA gyrase inhibitor YacG S96127_3236 PF00665 Integrase core domain S96127_3236 PF02796 Helix-turn-helix domain of resolvase S96127_3237 PF01695 IstB-like ATP binding protein S96127_3238 PF08676 MutL C terminal dimerisation domain S96127_3238 PF01119 DNA mismatch repair protein, C-terminal domain S96127_3240 PF13356 Arm DNA-binding domain S96127_3240 PF00589 Phage integrase family S96127_3241 PF03739 Lipopolysaccharide export system permease LptF/LptG S96127_3242 PF03739 Lipopolysaccharide export system permease LptF/LptG S96127_3243 PF02789 Cytosol aminopeptidase family, N-terminal domain S96127_3243 PF00883 Cytosol aminopeptidase family, catalytic domain S96127_3244 PF04364 DNA polymerase III chi subunit, HolC S96127_3245 PF08264 Anticodon-binding domain of tRNA S96127_3245 PF10458 Valyl tRNA synthetase tRNA binding arm S96127_3245 PF00133 tRNA synthetases class I (I, L, M and V) S96127_3246 PF00583 Acetyltransferase (GNAT) family S96127_3247 PF06877 Regulator of ribonuclease activity B S96127_3248 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain S96127_3248 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain S96127_3249 PF04074 YhcH/YjgK/YiaL S96127_3252 PF00528 Binding-protein-dependent transport system inner membrane component S96127_3253 PF00528 Binding-protein-dependent transport system inner membrane component S96127_3253 PF12911 N-terminal TM domain of oligopeptide transport permease C S96127_3254 PF08352 Oligopeptide/dipeptide transporter, C-terminal region S96127_3254 PF00005 ABC transporter S96127_3255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region S96127_3255 PF00005 ABC transporter S96127_3256 PF13597 Anaerobic ribonucleoside-triphosphate reductase S96127_3256 PF03477 ATP cone domain S96127_3258 PF00392 Bacterial regulatory proteins, gntR family S96127_3258 PF07702 UTRA domain S96127_3259 PF06754 Phosphonate metabolism protein PhnG S96127_3260 PF05845 Bacterial phosphonate metabolism protein (PhnH) S96127_3261 PF05861 Bacterial phosphonate metabolism protein (PhnI) S96127_3262 PF06007 Phosphonate metabolism protein PhnJ S96127_3263 PF00005 ABC transporter S96127_3265 PF00005 ABC transporter S96127_3266 PF07969 Amidohydrolase family S96127_3268 PF12706 Beta-lactamase superfamily domain S96127_3269 PF13460 NAD(P)H-binding S96127_3272 PF00005 ABC transporter S96127_3272 PF03459 TOBE domain S96127_3272 PF17912 MalK OB fold domain S96127_3273 PF00528 Binding-protein-dependent transport system inner membrane component S96127_3274 PF00528 Binding-protein-dependent transport system inner membrane component S96127_3275 PF13416 Bacterial extracellular solute-binding protein S96127_3278 PF01541 GIY-YIG catalytic domain S96127_3279 PF13508 Acetyltransferase (GNAT) domain S96127_3280 PF02036 SCP-2 sterol transfer family S96127_3281 PF01136 Peptidase family U32 S96127_3282 PF01136 Peptidase family U32 S96127_3283 PF08139 Prokaryotic membrane lipoprotein lipid attachment site S96127_3283 PF02321 Outer membrane efflux protein S96127_3284 PF00873 AcrB/AcrD/AcrF family S96127_3285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S96127_3285 PF00529 HlyD membrane-fusion protein of T1SS S96127_3286 PF00296 Luciferase-like monooxygenase S96127_3287 PF01381 Helix-turn-helix S96127_3290 PF00270 DEAD/DEAH box helicase S96127_3290 PF03880 DbpA RNA binding domain S96127_3290 PF12343 Cold shock protein DEAD box A S96127_3290 PF00271 Helicase conserved C-terminal domain S96127_3291 PF07719 Tetratricopeptide repeat S96127_3291 PF13181 Tetratricopeptide repeat S96127_3292 PF03725 3' exoribonuclease family, domain 2 S96127_3292 PF00575 S1 RNA binding domain S96127_3292 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain S96127_3292 PF00013 KH domain S96127_3292 PF01138 3' exoribonuclease family, domain 1 S96127_3293 PF13276 HTH-like domain S96127_3293 PF00665 Integrase core domain S96127_3293 PF13333 Integrase core domain S96127_3295 PF00669 Bacterial flagellin N-terminal helical region S96127_3295 PF00700 Bacterial flagellin C-terminal helical region S96127_3296 PF18500 CadC C-terminal domain 1 S96127_3296 PF00486 Transcriptional regulatory protein, C terminal S96127_3300 PF06429 Flagellar basal body rod FlgEFG protein C-terminal S96127_3300 PF00460 Flagella basal body rod protein S96127_3302 PF02119 Flagellar P-ring protein S96127_3303 PF02107 Flagellar L-ring protein S96127_3304 PF06429 Flagellar basal body rod FlgEFG protein C-terminal S96127_3304 PF00460 Flagella basal body rod protein S96127_3305 PF00460 Flagella basal body rod protein S96127_3305 PF06429 Flagellar basal body rod FlgEFG protein C-terminal S96127_3306 PF07559 Flagellar basal body protein FlaE S96127_3306 PF00460 Flagella basal body rod protein S96127_3306 PF06429 Flagellar basal body rod FlgEFG protein C-terminal S96127_3307 PF03963 Flagellar hook capping protein - N-terminal region S96127_3307 PF13860 FlgD Ig-like domain S96127_3307 PF13861 FlgD Tudor-like domain S96127_3308 PF06429 Flagellar basal body rod FlgEFG protein C-terminal S96127_3308 PF00460 Flagella basal body rod protein S96127_3309 PF00460 Flagella basal body rod protein S96127_3310 PF13144 Chaperone for flagella basal body P-ring formation S96127_3314 PF18269 T3SS EscN ATPase C-terminal domain S96127_3314 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S96127_3317 PF08345 Flagellar M-ring protein C-terminal S96127_3317 PF01514 Secretory protein of YscJ/FliF family S96127_3318 PF02049 Flagellar hook-basal body complex protein FliE S96127_3319 PF00158 Sigma-54 interaction domain S96127_3319 PF02954 Bacterial regulatory protein, Fis family S96127_3319 PF00072 Response regulator receiver domain S96127_3321 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term S96127_3322 PF00813 FliP family S96127_3323 PF01313 Bacterial export proteins, family 3 S96127_3324 PF01311 Bacterial export proteins, family 1 S96127_3325 PF01312 FlhB HrpN YscU SpaS Family S96127_3326 PF00771 FHIPEP family S96127_3327 PF00771 FHIPEP family S96127_3330 PF01497 Periplasmic binding protein S96127_3331 PF00419 Fimbrial protein S96127_3331 PF09222 Fimbrial adhesin F17-AG, lectin domain S96127_3332 PF02753 Pili assembly chaperone PapD, C-terminal domain S96127_3332 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain S96127_3333 PF00577 Outer membrane usher protein S96127_3333 PF13953 PapC C-terminal domain S96127_3333 PF13954 PapC N-terminal domain S96127_3338 PF04972 BON domain S96127_3338 PF13629 Pilus formation protein N terminal region S96127_3338 PF00263 Bacterial type II and III secretion system protein S96127_3339 PF04972 BON domain S96127_3339 PF13629 Pilus formation protein N terminal region S96127_3339 PF00263 Bacterial type II and III secretion system protein S96127_3342 PF00437 Type II/IV secretion system protein S96127_3349 PF02472 Biopolymer transport protein ExbD/TolR S96127_3350 PF01618 MotA/TolQ/ExbB proton channel family S96127_3351 PF01053 Cys/Met metabolism PLP-dependent enzyme S96127_3352 PF09335 SNARE associated Golgi protein S96127_3353 PF12833 Helix-turn-helix domain S96127_3353 PF06719 AraC-type transcriptional regulator N-terminus S96127_3354 PF00465 Iron-containing alcohol dehydrogenase S96127_3356 PF00248 Aldo/keto reductase family S96127_3357 PF08497 Radical SAM N-terminal S96127_3357 PF11842 Domain of unknown function (DUF3362) S96127_3357 PF04055 Radical SAM superfamily S96127_3358 PF04055 Radical SAM superfamily S96127_3358 PF08497 Radical SAM N-terminal S96127_3358 PF11842 Domain of unknown function (DUF3362) S96127_3359 PF07731 Multicopper oxidase S96127_3359 PF07732 Multicopper oxidase S96127_3360 PF01553 Acyltransferase S96127_3362 PF00521 DNA gyrase/topoisomerase IV, subunit A S96127_3362 PF03989 DNA gyrase C-terminal domain, beta-propeller S96127_3363 PF02525 Flavodoxin-like fold S96127_3364 PF03466 LysR substrate binding domain S96127_3364 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_3365 PF01751 Toprim domain S96127_3365 PF00204 DNA gyrase B S96127_3365 PF00986 DNA gyrase B subunit, carboxyl terminus S96127_3365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_3366 PF05728 Uncharacterised protein family (UPF0227) S96127_3367 PF00149 Calcineurin-like phosphoesterase S96127_3368 PF06853 Protein of unknown function (DUF1249) S96127_3369 PF00293 NUDIX domain S96127_3370 PF02321 Outer membrane efflux protein S96127_3372 PF06693 Protein of unknown function (DUF1190) S96127_3373 PF03738 Glutathionylspermidine synthase preATP-grasp S96127_3374 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase S96127_3375 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase S96127_3377 PF04380 Membrane fusogenic activity S96127_3378 PF13520 Amino acid permease S96127_3379 PF00294 pfkB family carbohydrate kinase S96127_3379 PF01467 Cytidylyltransferase-like S96127_3380 PF08335 GlnD PII-uridylyltransferase S96127_3380 PF03710 Glutamate-ammonia ligase adenylyltransferase S96127_3381 PF01928 CYTH domain S96127_3382 PF08239 Bacterial SH3 domain S96127_3383 PF01743 Poly A polymerase head domain S96127_3383 PF12627 Probable RNA and SrmB- binding site of polymerase A S96127_3383 PF01966 HD domain S96127_3384 PF02673 Bacitracin resistance protein BacA S96127_3385 PF02152 Dihydroneopterin aldolase S96127_3386 PF02660 Glycerol-3-phosphate acyltransferase S96127_3387 PF00814 Glycoprotease family S96127_3389 PF01165 Ribosomal protein S21 S96127_3391 PF08275 DNA primase catalytic core, N-terminal domain S96127_3391 PF01807 CHC2 zinc finger S96127_3391 PF08278 DNA primase DnaG DnaB-binding S96127_3391 PF10410 DnaB-helicase binding domain of primase S96127_3392 PF04545 Sigma-70, region 4 S96127_3392 PF04542 Sigma-70 region 2 S96127_3392 PF04546 Sigma-70, non-essential region S96127_3392 PF04539 Sigma-70 region 3 S96127_3392 PF00140 Sigma-70 factor, region 1.2 S96127_3392 PF03979 Sigma-70 factor, region 1.1 S96127_3402 PF03466 LysR substrate binding domain S96127_3402 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_3406 PF01042 Endoribonuclease L-PSP S96127_3410 PF00155 Aminotransferase class I and II S96127_3413 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S96127_3413 PF00529 HlyD membrane-fusion protein of T1SS S96127_3414 PF04632 Fusaric acid resistance protein family S96127_3416 PF01915 Glycosyl hydrolase family 3 C-terminal domain S96127_3416 PF00933 Glycosyl hydrolase family 3 N terminal domain S96127_3416 PF14310 Fibronectin type III-like domain S96127_3417 PF01915 Glycosyl hydrolase family 3 C-terminal domain S96127_3417 PF14310 Fibronectin type III-like domain S96127_3417 PF00933 Glycosyl hydrolase family 3 N terminal domain S96127_3419 PF00528 Binding-protein-dependent transport system inner membrane component S96127_3420 PF00528 Binding-protein-dependent transport system inner membrane component S96127_3421 PF01547 Bacterial extracellular solute-binding protein S96127_3422 PF00356 Bacterial regulatory proteins, lacI family S96127_3423 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain S96127_3424 PF03459 TOBE domain S96127_3424 PF17912 MalK OB fold domain S96127_3424 PF00005 ABC transporter S96127_3428 PF05860 haemagglutination activity domain S96127_3428 PF13332 Hemagglutinin repeat S96127_3428 PF13018 Extended Signal Peptide of Type V secretion system S96127_3428 PF04829 Pre-toxin domain with VENN motif S96127_3429 PF13018 Extended Signal Peptide of Type V secretion system S96127_3429 PF05860 haemagglutination activity domain S96127_3429 PF13332 Hemagglutinin repeat S96127_3429 PF04829 Pre-toxin domain with VENN motif S96127_3431 PF04829 Pre-toxin domain with VENN motif S96127_3431 PF13332 Hemagglutinin repeat S96127_3432 PF04829 Pre-toxin domain with VENN motif S96127_3432 PF13332 Hemagglutinin repeat S96127_3434 PF05860 haemagglutination activity domain S96127_3434 PF04829 Pre-toxin domain with VENN motif S96127_3434 PF13018 Extended Signal Peptide of Type V secretion system S96127_3434 PF13332 Hemagglutinin repeat S96127_3435 PF17287 POTRA domain S96127_3435 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB S96127_3435 PF08479 POTRA domain, ShlB-type S96127_3436 PF00092 von Willebrand factor type A domain S96127_3437 PF02342 TerD domain S96127_3439 PF00092 von Willebrand factor type A domain S96127_3442 PF03729 Short repeat of unknown function (DUF308) S96127_3443 PF07992 Pyridine nucleotide-disulphide oxidoreductase S96127_3443 PF00724 NADH:flavin oxidoreductase / NADH oxidase family S96127_3444 PF05175 Methyltransferase small domain S96127_3445 PF03797 Autotransporter beta-domain S96127_3446 PF01863 Protein of unknown function DUF45 S96127_3447 PF01408 Oxidoreductase family, NAD-binding Rossmann fold S96127_3448 PF00375 Sodium:dicarboxylate symporter family S96127_3450 PF01797 Transposase IS200 like S96127_3451 PF10688 Bacterial inner membrane protein S96127_3452 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus S96127_3452 PF08666 SAF domain S96127_3453 PF01232 Mannitol dehydrogenase Rossmann domain S96127_3453 PF08125 Mannitol dehydrogenase C-terminal domain S96127_3454 PF02614 Glucuronate isomerase S96127_3455 PF02614 Glucuronate isomerase S96127_3456 PF07690 Major Facilitator Superfamily S96127_3458 PF07729 FCD domain S96127_3458 PF00392 Bacterial regulatory proteins, gntR family S96127_3460 PF09335 SNARE associated Golgi protein S96127_3461 PF13721 SecD export protein N-terminal TM region S96127_3464 PF05957 Bacterial protein of unknown function (DUF883) S96127_3465 PF07332 Putative Actinobacterial Holin-X, holin superfamily III S96127_3467 PF07681 DoxX S96127_3468 PF13409 Glutathione S-transferase, N-terminal domain S96127_3469 PF00665 Integrase core domain S96127_3469 PF02796 Helix-turn-helix domain of resolvase S96127_3470 PF01695 IstB-like ATP binding protein S96127_3471 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain S96127_3471 PF01367 5'-3' exonuclease, C-terminal SAM fold S96127_3472 PF00293 NUDIX domain S96127_3473 PF07517 SecA DEAD-like domain S96127_3473 PF02810 SEC-C motif S96127_3473 PF07516 SecA Wing and Scaffold domain S96127_3473 PF01043 SecA preprotein cross-linking domain S96127_3474 PF06558 Secretion monitor precursor protein (SecM) S96127_3476 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase S96127_3477 PF00091 Tubulin/FtsZ family, GTPase domain S96127_3477 PF12327 FtsZ family, C-terminal domain S96127_3478 PF02491 SHS2 domain inserted in FTSA S96127_3479 PF08478 POTRA domain, FtsQ-type S96127_3479 PF03799 Cell division protein FtsQ S96127_3480 PF01820 D-ala D-ala ligase N-terminus S96127_3480 PF07478 D-ala D-ala ligase C-terminus S96127_3481 PF01225 Mur ligase family, catalytic domain S96127_3481 PF02875 Mur ligase family, glutamate ligase domain S96127_3481 PF08245 Mur ligase middle domain S96127_3482 PF03033 Glycosyltransferase family 28 N-terminal domain S96127_3482 PF04101 Glycosyltransferase family 28 C-terminal domain S96127_3483 PF01098 Cell cycle protein S96127_3484 PF08245 Mur ligase middle domain S96127_3484 PF02875 Mur ligase family, glutamate ligase domain S96127_3485 PF00953 Glycosyl transferase family 4 S96127_3485 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 S96127_3486 PF01225 Mur ligase family, catalytic domain S96127_3486 PF08245 Mur ligase middle domain S96127_3486 PF02875 Mur ligase family, glutamate ligase domain S96127_3487 PF01225 Mur ligase family, catalytic domain S96127_3487 PF02875 Mur ligase family, glutamate ligase domain S96127_3487 PF08245 Mur ligase middle domain S96127_3488 PF00905 Penicillin binding protein transpeptidase domain S96127_3488 PF03717 Penicillin-binding Protein dimerisation domain S96127_3489 PF04999 Cell division protein FtsL S96127_3490 PF01795 MraW methylase family S96127_3491 PF02381 MraZ protein, putative antitoxin-like S96127_3493 PF06610 L-alanine exporter S96127_3494 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family S96127_3494 PF00356 Bacterial regulatory proteins, lacI family S96127_3495 PF01797 Transposase IS200 like S96127_3497 PF10369 Small subunit of acetolactate synthase S96127_3498 PF00205 Thiamine pyrophosphate enzyme, central domain S96127_3498 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain S96127_3498 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain S96127_3499 PF00501 AMP-binding enzyme S96127_3500 PF03466 LysR substrate binding domain S96127_3500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_3503 PF01797 Transposase IS200 like S96127_3504 PF08502 LeuA allosteric (dimerisation) domain S96127_3504 PF00682 HMGL-like S96127_3505 PF00180 Isocitrate/isopropylmalate dehydrogenase S96127_3506 PF00330 Aconitase family (aconitate hydratase) S96127_3507 PF00694 Aconitase C-terminal domain S96127_3508 PF07690 Major Facilitator Superfamily S96127_3510 PF12793 Sugar transport-related sRNA regulator N-term S96127_3510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle S96127_3513 PF00528 Binding-protein-dependent transport system inner membrane component S96127_3514 PF00005 ABC transporter S96127_3515 PF09335 SNARE associated Golgi protein S96127_3516 PF03104 DNA polymerase family B, exonuclease domain S96127_3516 PF00136 DNA polymerase family B S96127_3517 PF18337 RapA N-terminal Tudor like domain S96127_3517 PF18339 RapA N-terminal Tudor like domain 1 S96127_3517 PF00176 SNF2 family N-terminal domain S96127_3517 PF12137 RNA polymerase recycling family C-terminal S96127_3517 PF00271 Helicase conserved C-terminal domain S96127_3519 PF14331 ImcF-related N-terminal domain S96127_3519 PF06761 Intracellular multiplication and human macrophage-killing S96127_3519 PF06744 Type VI secretion protein IcmF C-terminal S96127_3520 PF05736 OprF membrane domain S96127_3520 PF00691 OmpA family S96127_3521 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE S96127_3527 PF04717 Type VI secretion system, phage-baseplate injector S96127_3527 PF06715 Gp5 C-terminal repeat (3 copies) S96127_3528 PF00004 ATPase family associated with various cellular activities (AAA) S96127_3528 PF07724 AAA domain (Cdc48 subfamily) S96127_3528 PF17871 AAA lid domain S96127_3528 PF10431 C-terminal, D2-small domain, of ClpB protein S96127_3530 PF05947 Type VI secretion system, TssF S96127_3533 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath S96127_3534 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 S96127_3537 PF00849 RNA pseudouridylate synthase S96127_3538 PF05099 Tellurite resistance protein TerB S96127_3538 PF00226 DnaJ domain S96127_3539 PF04453 LPS transport system D S96127_3539 PF03968 OstA-like protein S96127_3540 PF09312 SurA N-terminal domain S96127_3540 PF00639 PPIC-type PPIASE domain S96127_3541 PF04166 Pyridoxal phosphate biosynthetic protein PdxA S96127_3542 PF00398 Ribosomal RNA adenine dimethylase S96127_3543 PF04379 ApaG domain S96127_3544 PF00149 Calcineurin-like phosphoesterase S96127_3548 PF01797 Transposase IS200 like S96127_3550 PF00186 Dihydrofolate reductase S96127_3551 PF12821 Threonine/Serine exporter, ThrE S96127_3552 PF06738 Putative threonine/serine exporter S96127_3553 PF01810 LysE type translocator S96127_3554 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain S96127_3554 PF02142 MGS-like domain S96127_3554 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain S96127_3555 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain S96127_3555 PF00117 Glutamine amidotransferase class-I S96127_3556 PF05173 Dihydrodipicolinate reductase, C-terminus S96127_3556 PF01113 Dihydrodipicolinate reductase, N-terminus S96127_3557 PF01797 Transposase IS200 like S96127_3559 PF02401 LytB protein S96127_3560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase S96127_3561 PF01252 Signal peptidase (SPase) II S96127_3562 PF00133 tRNA synthetases class I (I, L, M and V) S96127_3562 PF06827 Zinc finger found in FPG and IleRS S96127_3562 PF08264 Anticodon-binding domain of tRNA S96127_3563 PF01687 Riboflavin kinase S96127_3563 PF06574 FAD synthetase S96127_3564 PF01649 Ribosomal protein S20 S96127_3565 PF03466 LysR substrate binding domain S96127_3565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_3566 PF06965 Na+/H+ antiporter 1 S96127_3567 PF00226 DnaJ domain S96127_3567 PF01556 DnaJ C terminal domain S96127_3567 PF00684 DnaJ central domain S96127_3568 PF00012 Hsp70 protein S96127_3569 PF01184 GPR1/FUN34/yaaH family S96127_3571 PF07690 Major Facilitator Superfamily S96127_3572 PF00994 Probable molybdopterin binding domain S96127_3573 PF00923 Transaldolase/Fructose-6-phosphate aldolase S96127_3574 PF03883 Peroxide stress protein YaaA S96127_3575 PF14821 Threonine synthase N terminus S96127_3575 PF00291 Pyridoxal-phosphate dependent enzyme S96127_3576 PF00288 GHMP kinases N terminal domain S96127_3576 PF08544 GHMP kinases C terminal S96127_3577 PF00742 Homoserine dehydrogenase S96127_3577 PF00696 Amino acid kinase family S96127_3577 PF13840 ACT domain S96127_3577 PF03447 Homoserine dehydrogenase, NAD binding domain S96127_3577 PF01842 ACT domain S96127_3578 PF00486 Transcriptional regulatory protein, C terminal S96127_3578 PF00072 Response regulator receiver domain S96127_3579 PF05981 CreA protein S96127_3580 PF06445 GyrI-like small molecule binding domain S96127_3580 PF12833 Helix-turn-helix domain S96127_3581 PF00300 Histidine phosphatase superfamily (branch 1) S96127_3582 PF01931 Protein of unknown function DUF84 S96127_3583 PF01371 Trp repressor protein S96127_3584 PF01464 Transglycosylase SLT domain S96127_3584 PF14718 Soluble lytic murein transglycosylase L domain S96127_3585 PF00689 Cation transporting ATPase, C-terminus S96127_3585 PF00690 Cation transporter/ATPase, N-terminus S96127_3587 PF00990 Diguanylate cyclase, GGDEF domain S96127_3587 PF17152 Periplasmic sensor domain S96127_3588 PF00691 OmpA family S96127_3589 PF12848 ABC transporter S96127_3589 PF00005 ABC transporter S96127_3590 PF12848 ABC transporter S96127_3590 PF00005 ABC transporter S96127_3591 PF02661 Fic/DOC family S96127_3592 PF13521 AAA domain S96127_3592 PF01381 Helix-turn-helix S96127_3593 PF18073 Rubredoxin metal binding domain S96127_3594 PF18429 Domain of unknown function (DUF5609) S96127_3595 PF10144 Bacterial virulence factor haemolysin S96127_3596 PF01048 Phosphorylase superfamily S96127_3597 PF01676 Metalloenzyme superfamily S96127_3598 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain S96127_3598 PF00591 Glycosyl transferase family, a/b domain S96127_3598 PF02885 Glycosyl transferase family, helical bundle domain S96127_3599 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain S96127_3599 PF02885 Glycosyl transferase family, helical bundle domain S96127_3599 PF00591 Glycosyl transferase family, a/b domain S96127_3600 PF01791 DeoC/LacD family aldolase S96127_3601 PF01773 Na+ dependent nucleoside transporter N-terminus S96127_3601 PF07662 Na+ dependent nucleoside transporter C-terminus S96127_3601 PF07670 Nucleoside recognition S96127_3602 PF01026 TatD related DNase S96127_3603 PF01734 Patatin-like phospholipase S96127_3604 PF07043 Protein of unknown function (DUF1328) S96127_3605 PF04972 BON domain S96127_3606 PF00009 Elongation factor Tu GTP binding domain S96127_3606 PF03144 Elongation factor Tu domain 2 S96127_3606 PF16658 Class II release factor RF3, C-terminal domain S96127_3607 PF00583 Acetyltransferase (GNAT) family S96127_3608 PF03603 DNA polymerase III psi subunit S96127_3609 PF08468 Methyltransferase small domain N-terminal S96127_3609 PF05175 Methyltransferase small domain S96127_3611 PF07256 Protein of unknown function (DUF1435) S96127_3612 PF00990 Diguanylate cyclase, GGDEF domain S96127_3614 PF01095 Pectinesterase S96127_3619 PF00873 AcrB/AcrD/AcrF family S96127_3620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S96127_3623 PF01075 Glycosyltransferase family 9 (heptosyltransferase) S96127_3624 PF02782 FGGY family of carbohydrate kinases, C-terminal domain S96127_3624 PF00370 FGGY family of carbohydrate kinases, N-terminal domain S96127_3625 PF00325 Bacterial regulatory proteins, crp family S96127_3625 PF04198 Putative sugar-binding domain S96127_3626 PF04198 Putative sugar-binding domain S96127_3626 PF00325 Bacterial regulatory proteins, crp family S96127_3628 PF00005 ABC transporter S96127_3629 PF02653 Branched-chain amino acid transport system / permease component S96127_3630 PF02653 Branched-chain amino acid transport system / permease component S96127_3631 PF13407 Periplasmic binding protein domain S96127_3632 PF01791 DeoC/LacD family aldolase S96127_3633 PF03992 Antibiotic biosynthesis monooxygenase S96127_3634 PF10696 Protein of unknown function (DUF2501) S96127_3635 PF00391 PEP-utilising enzyme, mobile domain S96127_3635 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 S96127_3635 PF00381 PTS HPr component phosphorylation site S96127_3635 PF05524 PEP-utilising enzyme, N-terminal S96127_3635 PF02896 PEP-utilising enzyme, TIM barrel domain S96127_3637 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit S96127_3638 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit S96127_3639 PF12833 Helix-turn-helix domain S96127_3641 PF05987 Bacterial protein of unknown function (DUF898) S96127_3646 PF00665 Integrase core domain S96127_3651 PF01555 DNA methylase S96127_3652 PF01527 Transposase S96127_3655 PF07728 AAA domain (dynein-related subfamily) S96127_3655 PF12102 Domain of unknown function (DUF3578) S96127_3656 PF02796 Helix-turn-helix domain of resolvase S96127_3656 PF00665 Integrase core domain S96127_3657 PF01695 IstB-like ATP binding protein S96127_3658 PF02580 D-Tyr-tRNA(Tyr) deacylase S96127_3659 PF03631 Virulence factor BrkB S96127_3660 PF13419 Haloacid dehalogenase-like hydrolase S96127_3661 PF00679 Elongation factor G C-terminus S96127_3661 PF00009 Elongation factor Tu GTP binding domain S96127_3661 PF03144 Elongation factor Tu domain 2 S96127_3662 PF00120 Glutamine synthetase, catalytic domain S96127_3662 PF03951 Glutamine synthetase, beta-Grasp domain S96127_3663 PF00989 PAS fold S96127_3663 PF00512 His Kinase A (phospho-acceptor) domain S96127_3663 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_3664 PF00158 Sigma-54 interaction domain S96127_3664 PF02954 Bacterial regulatory protein, Fis family S96127_3664 PF00072 Response regulator receiver domain S96127_3665 PF06969 HemN C-terminal domain S96127_3665 PF04055 Radical SAM superfamily S96127_3666 PF04220 Der GTPase activator (YihI) S96127_3667 PF01926 50S ribosome-binding GTPase S96127_3668 PF01797 Transposase IS200 like S96127_3672 PF01367 5'-3' exonuclease, C-terminal SAM fold S96127_3672 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain S96127_3672 PF00476 DNA polymerase family A S96127_3672 PF01612 3'-5' exonuclease S96127_3673 PF01323 DSBA-like thioredoxin domain S96127_3674 PF01636 Phosphotransferase enzyme family S96127_3675 PF06288 Protein of unknown function (DUF1040) S96127_3676 PF12804 MobA-like NTP transferase domain S96127_3677 PF03205 Molybdopterin guanine dinucleotide synthesis protein B S96127_3678 PF00872 Transposase, Mutator family S96127_3680 PF00665 Integrase core domain S96127_3680 PF02796 Helix-turn-helix domain of resolvase S96127_3681 PF01695 IstB-like ATP binding protein S96127_3682 PF13409 Glutathione S-transferase, N-terminal domain S96127_3683 PF03466 LysR substrate binding domain S96127_3683 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_3684 PF17954 Quercetinase C-terminal cupin domain S96127_3684 PF02678 Pirin S96127_3685 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases S96127_3686 PF04348 LppC putative lipoprotein S96127_3687 PF02021 Uncharacterised protein family UPF0102 S96127_3688 PF13580 SIS domain S96127_3689 PF04972 BON domain S96127_3690 PF00912 Transglycosylase S96127_3692 PF00072 Response regulator receiver domain S96127_3692 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_3692 PF00512 His Kinase A (phospho-acceptor) domain S96127_3692 PF18415 Histidine kinase receptor ArcB trans-membrane domain S96127_3692 PF00989 PAS fold S96127_3692 PF01627 Hpt domain S96127_3694 PF16199 Radical_SAM C-terminal domain S96127_3694 PF04055 Radical SAM superfamily S96127_3695 PF01493 GXGXG motif S96127_3695 PF00310 Glutamine amidotransferases class-II S96127_3695 PF01645 Conserved region in glutamate synthase S96127_3695 PF04898 Glutamate synthase central domain S96127_3696 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster S96127_3696 PF07992 Pyridine nucleotide-disulphide oxidoreductase S96127_3698 PF04386 Stringent starvation protein B S96127_3699 PF00043 Glutathione S-transferase, C-terminal domain S96127_3699 PF02798 Glutathione S-transferase, N-terminal domain S96127_3701 PF00380 Ribosomal protein S9/S16 S96127_3702 PF00572 Ribosomal protein L13 S96127_3703 PF03969 AFG1-like ATPase S96127_3704 PF06295 Protein of unknown function (DUF1043) S96127_3705 PF00595 PDZ domain S96127_3705 PF13180 PDZ domain S96127_3706 PF01797 Transposase IS200 like S96127_3708 PF13180 PDZ domain S96127_3709 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) S96127_3710 PF01722 BolA-like protein S96127_3711 PF13466 STAS domain S96127_3712 PF05494 MlaC protein S96127_3713 PF02470 MlaD protein S96127_3714 PF02405 Permease MlaE S96127_3715 PF00005 ABC transporter S96127_3716 PF01699 Sodium/calcium exchanger protein S96127_3717 PF01380 SIS domain S96127_3717 PF00571 CBS domain S96127_3719 PF06835 Lipopolysaccharide-assembly, LptC-related S96127_3720 PF03968 OstA-like protein S96127_3721 PF12399 Branched-chain amino acid ATP-binding cassette transporter S96127_3721 PF00005 ABC transporter S96127_3722 PF04552 Sigma-54, DNA binding domain S96127_3722 PF00309 Sigma-54 factor, Activator interacting domain (AID) S96127_3722 PF04963 Sigma-54 factor, core binding domain S96127_3723 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein S96127_3724 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein S96127_3725 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 S96127_3726 PF03668 P-loop ATPase protein family S96127_3727 PF00381 PTS HPr component phosphorylation site S96127_3728 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain S96127_3728 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain S96127_3729 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain S96127_3729 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain S96127_3730 PF01042 Endoribonuclease L-PSP S96127_3732 PF00356 Bacterial regulatory proteins, lacI family S96127_3733 PF02378 Phosphotransferase system, EIIC S96127_3733 PF00367 phosphotransferase system, EIIB S96127_3734 PF00128 Alpha amylase, catalytic domain S96127_3734 PF11941 Domain of unknown function (DUF3459) S96127_3735 PF01272 Transcription elongation factor, GreA/GreB, C-term S96127_3735 PF14760 Rnk N-terminus S96127_3736 PF07361 Cytochrome b562 S96127_3738 PF01523 Putative modulator of DNA gyrase S96127_3739 PF04751 Protein of unknown function (DUF615) S96127_3740 PF01337 Barstar (barnase inhibitor) S96127_3742 PF00171 Aldehyde dehydrogenase family S96127_3743 PF00171 Aldehyde dehydrogenase family S96127_3744 PF04632 Fusaric acid resistance protein family S96127_3745 PF13533 Biotin-lipoyl like S96127_3746 PF07869 Protein of unknown function (DUF1656) S96127_3747 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_3747 PF03466 LysR substrate binding domain S96127_3750 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain S96127_3750 PF18413 Neuraminidase-like domain S96127_3751 PF12256 Insecticide toxin TcdB middle/N-terminal region S96127_3751 PF03534 Salmonella virulence plasmid 65kDa B protein S96127_3751 PF12255 Insecticide toxin TcdB middle/C-terminal region S96127_3756 PF05785 Rho-activating domain of cytotoxic necrotizing factor S96127_3756 PF18807 Tripartite Tc toxins repeat S96127_3757 PF18807 Tripartite Tc toxins repeat S96127_3757 PF14431 YwqJ-like deaminase S96127_3758 PF01523 Putative modulator of DNA gyrase S96127_3759 PF00795 Carbon-nitrogen hydrolase S96127_3760 PF13502 AsmA-like C-terminal region S96127_3760 PF13116 Protein of unknown function S96127_3761 PF00575 S1 RNA binding domain S96127_3761 PF10150 Ribonuclease E/G family S96127_3762 PF02545 Maf-like protein S96127_3763 PF04093 rod shape-determining protein MreD S96127_3764 PF04085 rod shape-determining protein MreC S96127_3766 PF17157 Gammaproteobacterial periplasmic sensor domain S96127_3766 PF00563 EAL domain S96127_3766 PF00990 Diguanylate cyclase, GGDEF domain S96127_3767 PF00107 Zinc-binding dehydrogenase S96127_3767 PF08240 Alcohol dehydrogenase GroES-like domain S96127_3768 PF00174 Oxidoreductase molybdopterin binding domain S96127_3769 PF01794 Ferric reductase like transmembrane component S96127_3770 PF01220 Dehydroquinase class II S96127_3771 PF00364 Biotin-requiring enzyme S96127_3772 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain S96127_3772 PF00289 Biotin carboxylase, N-terminal domain S96127_3772 PF02785 Biotin carboxylase C-terminal domain S96127_3773 PF06196 Protein of unknown function (DUF997) S96127_3774 PF00474 Sodium:solute symporter family S96127_3777 PF01207 Dihydrouridine synthase (Dus) S96127_3778 PF02954 Bacterial regulatory protein, Fis family S96127_3781 PF07690 Major Facilitator Superfamily S96127_3782 PF02627 Carboxymuconolactone decarboxylase family S96127_3783 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase S96127_3783 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase S96127_3784 PF00753 Metallo-beta-lactamase superfamily S96127_3785 PF05433 Glycine zipper 2TM domain S96127_3786 PF00313 'Cold-shock' DNA-binding domain S96127_3787 PF00313 'Cold-shock' DNA-binding domain S96127_3792 PF02798 Glutathione S-transferase, N-terminal domain S96127_3793 PF00571 CBS domain S96127_3793 PF01380 SIS domain S96127_3794 PF00370 FGGY family of carbohydrate kinases, N-terminal domain S96127_3794 PF02782 FGGY family of carbohydrate kinases, C-terminal domain S96127_3796 PF02653 Branched-chain amino acid transport system / permease component S96127_3797 PF00005 ABC transporter S96127_3800 PF03279 Bacterial lipid A biosynthesis acyltransferase S96127_3802 PF00999 Sodium/hydrogen exchanger family S96127_3803 PF00860 Permease family S96127_3804 PF04221 RelB antitoxin S96127_3806 PF00005 ABC transporter S96127_3807 PF00528 Binding-protein-dependent transport system inner membrane component S96127_3808 PF00296 Luciferase-like monooxygenase S96127_3809 PF09084 NMT1/THI5 like S96127_3810 PF03358 NADPH-dependent FMN reductase S96127_3811 PF01791 DeoC/LacD family aldolase S96127_3812 PF00294 pfkB family carbohydrate kinase S96127_3813 PF05025 RbsD / FucU transport protein family S96127_3814 PF02311 AraC-like ligand binding domain S96127_3814 PF12833 Helix-turn-helix domain S96127_3815 PF01408 Oxidoreductase family, NAD-binding Rossmann fold S96127_3815 PF02894 Oxidoreductase family, C-terminal alpha/beta domain S96127_3818 PF05593 RHS Repeat S96127_3818 PF03527 RHS protein S96127_3820 PF04717 Type VI secretion system, phage-baseplate injector S96127_3826 PF03527 RHS protein S96127_3826 PF05593 RHS Repeat S96127_3829 PF04717 Type VI secretion system, phage-baseplate injector S96127_3836 PF00004 ATPase family associated with various cellular activities (AAA) S96127_3836 PF07724 AAA domain (Cdc48 subfamily) S96127_3836 PF17871 AAA lid domain S96127_3836 PF10431 C-terminal, D2-small domain, of ClpB protein S96127_3838 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE S96127_3842 PF05947 Type VI secretion system, TssF S96127_3844 PF13333 Integrase core domain S96127_3844 PF00665 Integrase core domain S96127_3844 PF13276 HTH-like domain S96127_3848 PF16901 C-terminal domain of alpha-glycerophosphate oxidase S96127_3848 PF01266 FAD dependent oxidoreductase S96127_3849 PF00343 Carbohydrate phosphorylase S96127_3850 PF00534 Glycosyl transferases group 1 S96127_3850 PF08323 Starch synthase catalytic domain S96127_3851 PF00483 Nucleotidyl transferase S96127_3852 PF18390 Glycogen debranching enzyme C-terminal domain S96127_3852 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) S96127_3852 PF00128 Alpha amylase, catalytic domain S96127_3853 PF02806 Alpha amylase, C-terminal all-beta domain S96127_3853 PF00128 Alpha amylase, catalytic domain S96127_3853 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) S96127_3854 PF06580 Histidine kinase S96127_3854 PF07694 5TMR of 5TMR-LYT S96127_3855 PF02369 Bacterial Ig-like domain (group 1) S96127_3855 PF11924 Inverse autotransporter, beta-domain S96127_3855 PF07979 Intimin C-type lectin domain S96127_3855 PF09134 Invasin, domain 3 S96127_3859 PF01118 Semialdehyde dehydrogenase, NAD binding domain S96127_3859 PF02774 Semialdehyde dehydrogenase, dimerisation domain S96127_3860 PF01914 MarC family integral membrane protein S96127_3864 PF01202 Shikimate kinase S96127_3865 PF02447 GntP family permease S96127_3866 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family S96127_3866 PF00356 Bacterial regulatory proteins, lacI family S96127_3867 PF02678 Pirin S96127_3867 PF17954 Quercetinase C-terminal cupin domain S96127_3869 PF00486 Transcriptional regulatory protein, C terminal S96127_3869 PF00072 Response regulator receiver domain S96127_3871 PF01116 Fructose-bisphosphate aldolase class-II S96127_3873 PF13407 Periplasmic binding protein domain S96127_3874 PF02653 Branched-chain amino acid transport system / permease component S96127_3875 PF00005 ABC transporter S96127_3876 PF00072 Response regulator receiver domain S96127_3876 PF13188 PAS domain S96127_3876 PF08448 PAS fold S96127_3876 PF00512 His Kinase A (phospho-acceptor) domain S96127_3876 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_3878 PF01384 Phosphate transporter family S96127_3881 PF10625 Universal stress protein B (UspB) S96127_3882 PF00582 Universal stress protein family S96127_3883 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain S96127_3883 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase S96127_3884 PF08548 Peptidase M10 serralysin C terminal S96127_3884 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) S96127_3884 PF00413 Matrixin S96127_3885 PF04445 Putative SAM-dependent methyltransferase S96127_3886 PF01432 Peptidase family M3 S96127_3887 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ S96127_3888 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain S96127_3888 PF07992 Pyridine nucleotide-disulphide oxidoreductase S96127_3889 PF05651 Putative sugar diacid recognition S96127_3889 PF17853 GGDEF-like domain S96127_3889 PF13556 PucR C-terminal helix-turn-helix domain S96127_3890 PF02447 GntP family permease S96127_3891 PF02595 Glycerate kinase family S96127_3897 PF03631 Virulence factor BrkB S96127_3898 PF02611 CDP-diacylglycerol pyrophosphatase S96127_3899 PF05170 AsmA family S96127_3900 PF00563 EAL domain S96127_3901 PF01361 Tautomerase enzyme S96127_3902 PF00294 pfkB family carbohydrate kinase S96127_3903 PF05193 Peptidase M16 inactive domain S96127_3903 PF00675 Insulinase (Peptidase family M16) S96127_3904 PF00375 Sodium:dicarboxylate symporter family S96127_3906 PF06917 Periplasmic pectate lyase S96127_3907 PF06178 Oligogalacturonate-specific porin protein (KdgM) S96127_3908 PF00563 EAL domain S96127_3908 PF00990 Diguanylate cyclase, GGDEF domain S96127_3908 PF17154 Gammaproteobacterial periplasmic sensor domain S96127_3908 PF00672 HAMP domain S96127_3909 PF01270 Glycosyl hydrolases family 8 S96127_3911 PF08352 Oligopeptide/dipeptide transporter, C-terminal region S96127_3911 PF00005 ABC transporter S96127_3912 PF00005 ABC transporter S96127_3912 PF08352 Oligopeptide/dipeptide transporter, C-terminal region S96127_3913 PF00528 Binding-protein-dependent transport system inner membrane component S96127_3913 PF12911 N-terminal TM domain of oligopeptide transport permease C S96127_3914 PF00528 Binding-protein-dependent transport system inner membrane component S96127_3915 PF00528 Binding-protein-dependent transport system inner membrane component S96127_3916 PF00528 Binding-protein-dependent transport system inner membrane component S96127_3917 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle S96127_3919 PF17287 POTRA domain S96127_3919 PF08479 POTRA domain, ShlB-type S96127_3919 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB S96127_3920 PF13332 Hemagglutinin repeat S96127_3920 PF05594 Haemagluttinin repeat S96127_3920 PF04829 Pre-toxin domain with VENN motif S96127_3920 PF05860 haemagglutination activity domain S96127_3921 PF07690 Major Facilitator Superfamily S96127_3922 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_3922 PF07730 Histidine kinase S96127_3922 PF05231 MASE1 S96127_3923 PF01695 IstB-like ATP binding protein S96127_3924 PF00665 Integrase core domain S96127_3924 PF02796 Helix-turn-helix domain of resolvase S96127_3925 PF07730 Histidine kinase S96127_3925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_3925 PF05231 MASE1 S96127_3926 PF00196 Bacterial regulatory proteins, luxR family S96127_3926 PF00072 Response regulator receiver domain S96127_3927 PF08019 Phosphoethanolamine transferase EptA/EptB S96127_3927 PF00884 Sulfatase S96127_3929 PF12146 Serine aminopeptidase, S33 S96127_3931 PF00324 Amino acid permease S96127_3932 PF00221 Aromatic amino acid lyase S96127_3933 PF01175 Urocanase Rossmann-like domain S96127_3933 PF17392 Urocanase C-terminal domain S96127_3933 PF17391 Urocanase N-terminal domain S96127_3934 PF00291 Pyridoxal-phosphate dependent enzyme S96127_3935 PF00156 Phosphoribosyl transferase domain S96127_3938 PF01497 Periplasmic binding protein S96127_3939 PF01032 FecCD transport family S96127_3940 PF01032 FecCD transport family S96127_3941 PF00005 ABC transporter S96127_3945 PF13737 Transposase DDE domain S96127_3946 PF13737 Transposase DDE domain S96127_3948 PF00589 Phage integrase family S96127_3948 PF14659 Phage integrase, N-terminal SAM-like domain S96127_3948 PF13356 Arm DNA-binding domain S96127_3949 PF12833 Helix-turn-helix domain S96127_3950 PF02653 Branched-chain amino acid transport system / permease component S96127_3951 PF00005 ABC transporter S96127_3952 PF13407 Periplasmic binding protein domain S96127_3955 PF02782 FGGY family of carbohydrate kinases, C-terminal domain S96127_3955 PF00370 FGGY family of carbohydrate kinases, N-terminal domain S96127_3957 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain S96127_3957 PF02753 Pili assembly chaperone PapD, C-terminal domain S96127_3958 PF00577 Outer membrane usher protein S96127_3958 PF13953 PapC C-terminal domain S96127_3958 PF13954 PapC N-terminal domain S96127_3959 PF13953 PapC C-terminal domain S96127_3959 PF13954 PapC N-terminal domain S96127_3959 PF00577 Outer membrane usher protein S96127_3960 PF00419 Fimbrial protein S96127_3961 PF01757 Acyltransferase family S96127_3964 PF13276 HTH-like domain S96127_3964 PF13333 Integrase core domain S96127_3964 PF00665 Integrase core domain S96127_3966 PF07690 Major Facilitator Superfamily S96127_3971 PF01526 Tn3 transposase DDE domain S96127_3971 PF13700 Domain of unknown function (DUF4158) S96127_3972 PF00009 Elongation factor Tu GTP binding domain S96127_3972 PF09107 Elongation factor SelB, winged helix S96127_3972 PF03144 Elongation factor Tu domain 2 S96127_3972 PF09106 Elongation factor SelB, winged helix S96127_3973 PF00009 Elongation factor Tu GTP binding domain S96127_3973 PF09107 Elongation factor SelB, winged helix S96127_3973 PF09106 Elongation factor SelB, winged helix S96127_3973 PF03144 Elongation factor Tu domain 2 S96127_3974 PF12390 Selenocysteine synthase N terminal S96127_3974 PF03841 L-seryl-tRNA selenium transferase S96127_3975 PF04216 Protein involved in formate dehydrogenase formation S96127_3976 PF01292 Prokaryotic cytochrome b561 S96127_3977 PF13247 4Fe-4S dicluster domain S96127_3977 PF09163 Formate dehydrogenase N, transmembrane S96127_3978 PF01568 Molydopterin dinucleotide binding domain S96127_3978 PF04879 Molybdopterin oxidoreductase Fe4S4 domain S96127_3978 PF00384 Molybdopterin oxidoreductase S96127_3979 PF01568 Molydopterin dinucleotide binding domain S96127_3979 PF00384 Molybdopterin oxidoreductase S96127_3979 PF04879 Molybdopterin oxidoreductase Fe4S4 domain S96127_3980 PF02634 FdhD/NarQ family S96127_3982 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain S96127_3982 PF02777 Iron/manganese superoxide dismutases, C-terminal domain S96127_3983 PF00672 HAMP domain S96127_3983 PF02203 Tar ligand binding domain homologue S96127_3983 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain S96127_3987 PF10928 Protein of unknown function (DUF2810) S96127_3988 PF05068 Mannitol repressor S96127_3989 PF08125 Mannitol dehydrogenase C-terminal domain S96127_3989 PF01232 Mannitol dehydrogenase Rossmann domain S96127_3990 PF02378 Phosphotransferase system, EIIC S96127_3990 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit S96127_3990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 S96127_3991 PF11254 Protein of unknown function (DUF3053) S96127_3992 PF02092 Glycyl-tRNA synthetase beta subunit S96127_3992 PF05746 DALR anticodon binding domain S96127_3993 PF02091 Glycyl-tRNA synthetase alpha subunit S96127_3994 PF03352 Methyladenine glycosylase S96127_3996 PF00691 OmpA family S96127_3996 PF13488 Glycine zipper S96127_3998 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain S96127_3998 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain S96127_3999 PF00128 Alpha amylase, catalytic domain S96127_4001 PF00155 Aminotransferase class I and II S96127_4002 PF06826 Predicted Permease Membrane Region S96127_4002 PF02080 TrkA-C domain S96127_4004 PF00011 Hsp20/alpha crystallin family S96127_4005 PF00011 Hsp20/alpha crystallin family S96127_4006 PF07119 Protein of unknown function (DUF1375) S96127_4007 PF07676 WD40-like Beta Propeller Repeat S96127_4007 PF12566 Protein of unknown function (DUF3748) S96127_4008 PF12566 Protein of unknown function (DUF3748) S96127_4008 PF07676 WD40-like Beta Propeller Repeat S96127_4009 PF13291 ACT domain S96127_4009 PF00291 Pyridoxal-phosphate dependent enzyme S96127_4010 PF02423 Ornithine cyclodeaminase/mu-crystallin family S96127_4012 PF13276 HTH-like domain S96127_4012 PF13333 Integrase core domain S96127_4012 PF00665 Integrase core domain S96127_4013 PF02219 Methylenetetrahydrofolate reductase S96127_4014 PF03447 Homoserine dehydrogenase, NAD binding domain S96127_4014 PF00696 Amino acid kinase family S96127_4014 PF00742 Homoserine dehydrogenase S96127_4015 PF01053 Cys/Met metabolism PLP-dependent enzyme S96127_4016 PF01053 Cys/Met metabolism PLP-dependent enzyme S96127_4017 PF01340 Met Apo-repressor, MetJ S96127_4018 PF05360 yiaA/B two helix domain S96127_4019 PF01197 Ribosomal protein L31 S96127_4020 PF00271 Helicase conserved C-terminal domain S96127_4020 PF17764 3′ DNA-binding domain (3′BD) S96127_4020 PF18074 Primosomal protein N C-terminal domain S96127_4020 PF18319 PriA DNA helicase Cys-rich region (CRR) domain S96127_4020 PF00270 DEAD/DEAH box helicase S96127_4022 PF00356 Bacterial regulatory proteins, lacI family S96127_4023 PF05036 Sporulation related domain S96127_4024 PF00227 Proteasome subunit S96127_4025 PF10431 C-terminal, D2-small domain, of ClpB protein S96127_4025 PF00004 ATPase family associated with various cellular activities (AAA) S96127_4025 PF07724 AAA domain (Cdc48 subfamily) S96127_4026 PF01040 UbiA prenyltransferase family S96127_4027 PF03737 Aldolase/RraA S96127_4031 PF00529 HlyD membrane-fusion protein of T1SS S96127_4031 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S96127_4032 PF00664 ABC transporter transmembrane region S96127_4032 PF00005 ABC transporter S96127_4032 PF03412 Peptidase C39 family S96127_4035 PF06005 Cell division protein ZapB S96127_4036 PF00230 Major intrinsic protein S96127_4037 PF00370 FGGY family of carbohydrate kinases, N-terminal domain S96127_4037 PF02782 FGGY family of carbohydrate kinases, C-terminal domain S96127_4038 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded S96127_4039 PF00970 Oxidoreductase FAD-binding domain S96127_4039 PF00175 Oxidoreductase NAD-binding domain S96127_4040 PF05656 Protein of unknown function (DUF805) S96127_4041 PF07305 Protein of unknown function (DUF1454) S96127_4042 PF00121 Triosephosphate isomerase S96127_4043 PF03466 LysR substrate binding domain S96127_4043 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S96127_4044 PF02585 GlcNAc-PI de-N-acetylase S96127_4045 PF03737 Aldolase/RraA S96127_4046 PF00939 Sodium:sulfate symporter transmembrane region S96127_4049 PF00365 Phosphofructokinase S96127_4050 PF16916 Dimerisation domain of Zinc Transporter S96127_4050 PF01545 Cation efflux family S96127_4051 PF04754 Putative transposase, YhgA-like S96127_4053 PF07813 LTXXQ motif family protein S96127_4054 PF00486 Transcriptional regulatory protein, C terminal S96127_4054 PF00072 Response regulator receiver domain S96127_4055 PF16527 Two-component sensor protein CpxA, periplasmic domain S96127_4055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_4055 PF00512 His Kinase A (phospho-acceptor) domain S96127_4055 PF00672 HAMP domain S96127_4056 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain S96127_4056 PF12833 Helix-turn-helix domain S96127_4056 PF02805 Metal binding domain of Ada S96127_4056 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain S96127_4057 PF00588 SpoU rRNA Methylase family S96127_4058 PF00132 Bacterial transferase hexapeptide (six repeats) S96127_4058 PF06426 Serine acetyltransferase, N-terminal S96127_4059 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus S96127_4059 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus S96127_4060 PF02556 Preprotein translocase subunit SecB S96127_4061 PF00462 Glutaredoxin S96127_4062 PF00581 Rhodanese-like domain S96127_4063 PF06415 BPG-independent PGAM N-terminus (iPGM_N) S96127_4063 PF01676 Metalloenzyme superfamily S96127_4064 PF01551 Peptidase family M23 S96127_4065 PF04748 Divergent polysaccharide deacetylase S96127_4066 PF04748 Divergent polysaccharide deacetylase S96127_4067 PF00107 Zinc-binding dehydrogenase S96127_4067 PF08240 Alcohol dehydrogenase GroES-like domain S96127_4068 PF00155 Aminotransferase class I and II S96127_4069 PF01370 NAD dependent epimerase/dehydratase family S96127_4070 PF01075 Glycosyltransferase family 9 (heptosyltransferase) S96127_4071 PF01075 Glycosyltransferase family 9 (heptosyltransferase) S96127_4072 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) S96127_4073 PF00535 Glycosyl transferase family 2 S96127_4074 PF01467 Cytidylyltransferase-like S96127_4075 PF06827 Zinc finger found in FPG and IleRS S96127_4075 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain S96127_4075 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain S96127_4076 PF00471 Ribosomal protein L33 S96127_4077 PF00830 Ribosomal L28 family S96127_4078 PF04002 RadC-like JAB domain S96127_4079 PF04127 DNA / pantothenate metabolism flavoprotein S96127_4079 PF02441 Flavoprotein S96127_4080 PF00692 dUTPase S96127_4081 PF00440 Bacterial regulatory proteins, tetR family S96127_4082 PF00156 Phosphoribosyl transferase domain S96127_4083 PF01138 3' exoribonuclease family, domain 1 S96127_4083 PF03725 3' exoribonuclease family, domain 2 S96127_4084 PF03755 YicC-like family, N-terminal region S96127_4084 PF08340 Domain of unknown function (DUF1732) S96127_4085 PF03458 UPF0126 domain S96127_4086 PF01653 NAD-dependent DNA ligase adenylation domain S96127_4086 PF03120 NAD-dependent DNA ligase OB-fold domain S96127_4087 PF00625 Guanylate kinase S96127_4088 PF01192 RNA polymerase Rpb6 S96127_4089 PF04607 Region found in RelA / SpoT proteins S96127_4089 PF02824 TGS domain S96127_4089 PF13291 ACT domain S96127_4090 PF00588 SpoU rRNA Methylase family S96127_4090 PF12105 SpoU, rRNA methylase, C-terminal S96127_4091 PF00271 Helicase conserved C-terminal domain S96127_4091 PF00270 DEAD/DEAH box helicase S96127_4091 PF17191 RecG wedge domain S96127_4092 PF03616 Sodium/glutamate symporter S96127_4094 PF00860 Permease family S96127_4095 PF05170 AsmA family S96127_4096 PF00583 Acetyltransferase (GNAT) family S96127_4096 PF09500 Putative thioesterase (yiiD_Cterm) S96127_4097 PF00665 Integrase core domain S96127_4097 PF02796 Helix-turn-helix domain of resolvase S96127_4098 PF01695 IstB-like ATP binding protein S96127_4099 PF00132 Bacterial transferase hexapeptide (six repeats) S96127_4100 PF01488 Shikimate / quinate 5-dehydrogenase S96127_4100 PF18317 Shikimate 5'-dehydrogenase C-terminal domain S96127_4100 PF08501 Shikimate dehydrogenase substrate binding domain S96127_4101 PF01300 Telomere recombination S96127_4102 PF01396 Topoisomerase DNA binding C4 zinc finger S96127_4103 PF04361 Protein of unknown function (DUF494) S96127_4104 PF02481 DNA recombination-mediator protein A S96127_4104 PF17782 DprA winged helix domain S96127_4105 PF01327 Polypeptide deformylase S96127_4106 PF00551 Formyl transferase S96127_4106 PF02911 Formyl transferase, C-terminal domain S96127_4107 PF01189 16S rRNA methyltransferase RsmB/F S96127_4107 PF01029 NusB family S96127_4108 PF02254 TrkA-N domain S96127_4108 PF02080 TrkA-C domain S96127_4109 PF01741 Large-conductance mechanosensitive channel, MscL S96127_4110 PF03889 Alternative ribosome-rescue factor A S96127_4111 PF13411 MerR HTH family regulatory protein S96127_4112 PF01196 Ribosomal protein L17 S96127_4113 PF01000 RNA polymerase Rpb3/RpoA insert domain S96127_4113 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain S96127_4113 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain S96127_4114 PF00163 Ribosomal protein S4/S9 N-terminal domain S96127_4114 PF01479 S4 domain S96127_4115 PF00411 Ribosomal protein S11 S96127_4116 PF00416 Ribosomal protein S13/S18 S96127_4117 PF00344 SecY translocase S96127_4118 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A S96127_4119 PF00327 Ribosomal protein L30p/L7e S96127_4120 PF00333 Ribosomal protein S5, N-terminal domain S96127_4120 PF03719 Ribosomal protein S5, C-terminal domain S96127_4121 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast S96127_4122 PF00347 Ribosomal protein L6 S96127_4123 PF00410 Ribosomal protein S8 S96127_4124 PF00253 Ribosomal protein S14p/S29e S96127_4125 PF00281 Ribosomal protein L5 S96127_4125 PF00673 ribosomal L5P family C-terminus S96127_4126 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 S96127_4126 PF00467 KOW motif S96127_4127 PF00238 Ribosomal protein L14p/L23e S96127_4128 PF00366 Ribosomal protein S17 S96127_4129 PF00831 Ribosomal L29 protein S96127_4130 PF00252 Ribosomal protein L16p/L10e S96127_4131 PF00189 Ribosomal protein S3, C-terminal domain S96127_4131 PF07650 KH domain S96127_4132 PF00237 Ribosomal protein L22p/L17e S96127_4133 PF00203 Ribosomal protein S19 S96127_4134 PF00181 Ribosomal Proteins L2, RNA binding domain S96127_4134 PF03947 Ribosomal Proteins L2, C-terminal domain S96127_4135 PF00276 Ribosomal protein L23 S96127_4136 PF00573 Ribosomal protein L4/L1 family S96127_4137 PF00297 Ribosomal protein L3 S96127_4138 PF00338 Ribosomal protein S10p/S20e S96127_4139 PF00210 Ferritin-like domain S96127_4140 PF04324 BFD-like [2Fe-2S] binding domain S96127_4141 PF01797 Transposase IS200 like S96127_4143 PF00009 Elongation factor Tu GTP binding domain S96127_4143 PF03144 Elongation factor Tu domain 2 S96127_4143 PF03143 Elongation factor Tu C-terminal domain S96127_4144 PF00009 Elongation factor Tu GTP binding domain S96127_4144 PF03144 Elongation factor Tu domain 2 S96127_4144 PF03764 Elongation factor G, domain IV S96127_4144 PF14492 Elongation Factor G, domain II S96127_4144 PF00679 Elongation factor G C-terminus S96127_4145 PF00177 Ribosomal protein S7p/S5e S96127_4146 PF00164 Ribosomal protein S12/S23 S96127_4147 PF04077 DsrH like protein S96127_4148 PF02635 DsrE/DsrF-like family S96127_4149 PF02635 DsrE/DsrF-like family S96127_4150 PF08348 YheO-like PAS domain S96127_4150 PF13309 HTH domain S96127_4151 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase S96127_4151 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase S96127_4152 PF04102 SlyX S96127_4153 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase S96127_4154 PF09526 Probable metal-binding protein (DUF2387) S96127_4155 PF02254 TrkA-N domain S96127_4155 PF00999 Sodium/hydrogen exchanger family S96127_4156 PF02525 Flavodoxin-like fold S96127_4157 PF12848 ABC transporter S96127_4157 PF00005 ABC transporter S96127_4158 PF12848 ABC transporter S96127_4158 PF00005 ABC transporter S96127_4159 PF00535 Glycosyl transferase family 2 S96127_4161 PF02668 Taurine catabolism dioxygenase TauD, TfdA family S96127_4162 PF00528 Binding-protein-dependent transport system inner membrane component S96127_4163 PF00005 ABC transporter S96127_4164 PF04069 Substrate binding domain of ABC-type glycine betaine transport system S96127_4165 PF01810 LysE type translocator S96127_4166 PF00561 alpha/beta hydrolase fold S96127_4167 PF06794 Uncharacterised protein family (UPF0270) S96127_4168 PF00485 Phosphoribulokinase / Uridine kinase family S96127_4170 PF02566 OsmC-like protein S96127_4171 PF00027 Cyclic nucleotide-binding domain S96127_4171 PF13545 Crp-like helix-turn-helix domain S96127_4172 PF12805 FUSC-like inner membrane protein yccS S96127_4173 PF00202 Aminotransferase class-III S96127_4174 PF00117 Glutamine amidotransferase class-I S96127_4175 PF05872 Bacterial protein of unknown function (DUF853) S96127_4176 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD S96127_4178 PF02056 Family 4 glycosyl hydrolase S96127_4178 PF11975 Family 4 glycosyl hydrolase C-terminal domain S96127_4179 PF00356 Bacterial regulatory proteins, lacI family S96127_4181 PF07690 Major Facilitator Superfamily S96127_4182 PF07969 Amidohydrolase family S96127_4184 PF01077 Nitrite and sulphite reductase 4Fe-4S domain S96127_4184 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain S96127_4184 PF07992 Pyridine nucleotide-disulphide oxidoreductase S96127_4184 PF18267 Rubredoxin NAD+ reductase C-terminal domain S96127_4184 PF04324 BFD-like [2Fe-2S] binding domain S96127_4185 PF13806 Rieske-like [2Fe-2S] domain S96127_4187 PF01226 Formate/nitrite transporter S96127_4188 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases S96127_4188 PF10414 Sirohaem synthase dimerisation region S96127_4188 PF14824 Sirohaem biosynthesis protein central S96127_4189 PF00579 tRNA synthetases class I (W and Y) S96127_4190 PF13419 Haloacid dehalogenase-like hydrolase S96127_4191 PF00834 Ribulose-phosphate 3 epimerase family S96127_4192 PF02086 D12 class N6 adenine-specific DNA methyltransferase S96127_4193 PF05036 Sporulation related domain S96127_4194 PF01761 3-dehydroquinate synthase S96127_4195 PF01202 Shikimate kinase S96127_4196 PF00263 Bacterial type II and III secretion system protein S96127_4196 PF03958 Bacterial type II/III secretion system short domain S96127_4202 PF17092 Penicillin-binding protein OB-like domain S96127_4202 PF00905 Penicillin binding protein transpeptidase domain S96127_4202 PF00912 Transglycosylase S96127_4203 PF00293 NUDIX domain S96127_4204 PF07095 Intracellular growth attenuator protein IgaA S96127_4205 PF13419 Haloacid dehalogenase-like hydrolase S96127_4206 PF01479 S4 domain S96127_4207 PF01430 Hsp33 protein S96127_4208 PF01293 Phosphoenolpyruvate carboxykinase S96127_4209 PF00512 His Kinase A (phospho-acceptor) domain S96127_4209 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S96127_4209 PF00672 HAMP domain S96127_4210 PF00486 Transcriptional regulatory protein, C terminal S96127_4210 PF00072 Response regulator receiver domain S96127_4211 PF03449 Transcription elongation factor, N-terminal S96127_4211 PF01272 Transcription elongation factor, GreA/GreB, C-term S96127_4212 PF16921 Tex protein YqgF-like domain S96127_4212 PF09371 Tex-like protein N-terminal domain S96127_4212 PF00575 S1 RNA binding domain S96127_4212 PF17674 HHH domain S96127_4213 PF04023 FeoA domain S96127_4214 PF07670 Nucleoside recognition S96127_4214 PF07664 Ferrous iron transport protein B C terminus S96127_4214 PF02421 Ferrous iron transport protein B S96127_4214 PF17910 FeoB cytosolic helical domain S96127_4215 PF09012 FeoC like transcriptional regulator S96127_4218 PF07338 Protein of unknown function (DUF1471) S96127_4219 PF00561 alpha/beta hydrolase fold S96127_4221 PF00156 Phosphoribosyl transferase domain S96127_4222 PF01521 Iron-sulphur cluster biosynthesis S96127_4222 PF01106 NifU-like domain S96127_4223 PF02446 4-alpha-glucanotransferase S96127_4224 PF00343 Carbohydrate phosphorylase S96127_4225 PF00343 Carbohydrate phosphorylase S96127_4226 PF17874 MalT-like TPR region S96127_4226 PF00196 Bacterial regulatory proteins, luxR family S96127_4227 PF01695 IstB-like ATP binding protein S96127_4228 PF00665 Integrase core domain S96127_4228 PF02796 Helix-turn-helix domain of resolvase S96127_4229 PF17874 MalT-like TPR region S96127_4229 PF00196 Bacterial regulatory proteins, luxR family S96127_4230 PF00581 Rhodanese-like domain S96127_4231 PF01694 Rhomboid family S96127_4231 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease S96127_4232 PF08220 DeoR-like helix-turn-helix domain S96127_4232 PF00455 DeoR C terminal sensor domain S96127_4234 PF05947 Type VI secretion system, TssF S96127_4236 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath S96127_4238 PF05638 Type VI secretion system effector, Hcp S96127_4240 PF07148 Maltose operon periplasmic protein precursor (MalM) S96127_4241 PF02264 LamB porin S96127_4242 PF00005 ABC transporter S96127_4242 PF17912 MalK OB fold domain S96127_4244 PF01547 Bacterial extracellular solute-binding protein S96127_4245 PF14785 Maltose transport system permease protein MalF P2 domain S96127_4245 PF00528 Binding-protein-dependent transport system inner membrane component S96127_4246 PF00528 Binding-protein-dependent transport system inner membrane component S96127_4247 PF06146 Phosphate-starvation-inducible E S96127_4249 PF00342 Phosphoglucose isomerase S96127_4250 PF01842 ACT domain S96127_4250 PF00696 Amino acid kinase family S96127_4251 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB S96127_4251 PF08479 POTRA domain, ShlB-type S96127_4251 PF17287 POTRA domain S96127_4252 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB S96127_4252 PF08479 POTRA domain, ShlB-type S96127_4252 PF17287 POTRA domain S96127_4253 PF05860 haemagglutination activity domain S96127_4253 PF13332 Hemagglutinin repeat S96127_4254 PF00809 Pterin binding enzyme S96127_4254 PF02310 B12 binding domain S96127_4254 PF02607 B12 binding domain S96127_4254 PF02574 Homocysteine S-methyltransferase S96127_4254 PF02965 Vitamin B12 dependent methionine synthase, activation domain S96127_4255 PF01614 Bacterial transcriptional regulator S96127_4255 PF09339 IclR helix-turn-helix domain S96127_4256 PF09339 IclR helix-turn-helix domain S96127_4256 PF01614 Bacterial transcriptional regulator S96127_4257 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) S96127_4258 PF00463 Isocitrate lyase family S96127_4259 PF01274 Malate synthase S96127_4260 PF04204 Homoserine O-succinyltransferase S96127_4263 PF07729 FCD domain S96127_4263 PF00392 Bacterial regulatory proteins, gntR family S96127_4264 PF07690 Major Facilitator Superfamily S96127_4266 PF00294 pfkB family carbohydrate kinase S96127_4267 PF05025 RbsD / FucU transport protein family S96127_4268 PF02705 K+ potassium transporter S96127_4269 PF07728 AAA domain (dynein-related subfamily) S96127_4269 PF17868 AAA lid domain S96127_4269 PF12592 Protein of unknown function (DUF3763) S96127_4270 PF05762 VWA domain containing CoxE-like protein S96127_4271 PF03590 Aspartate-ammonia ligase S96127_4272 PF01037 Lrp/AsnC ligand binding domain S96127_4273 PF00258 Flavodoxin S96127_4274 PF01134 Glucose inhibited division protein A S96127_4274 PF13932 GidA associated domain S96127_4275 PF02527 rRNA small subunit methyltransferase G S96127_4276 PF03899 ATP synthase I chain S96127_4277 PF00119 ATP synthase A chain S96127_4278 PF00137 ATP synthase subunit C S96127_4279 PF00430 ATP synthase B/B' CF(0) S96127_4280 PF00213 ATP synthase delta (OSCP) subunit S96127_4281 PF02874 ATP synthase alpha/beta family, beta-barrel domain S96127_4281 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S96127_4281 PF00306 ATP synthase alpha/beta chain, C terminal domain S96127_4282 PF00231 ATP synthase S96127_4283 PF02874 ATP synthase alpha/beta family, beta-barrel domain S96127_4283 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S96127_4284 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain S96127_4284 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain S96127_4285 PF00132 Bacterial transferase hexapeptide (six repeats) S96127_4285 PF12804 MobA-like NTP transferase domain S96127_4286 PF01380 SIS domain S96127_4287 PF12849 PBP superfamily domain S96127_4288 PF00528 Binding-protein-dependent transport system inner membrane component S96127_4289 PF00528 Binding-protein-dependent transport system inner membrane component S96127_4290 PF00005 ABC transporter S96127_4291 PF01895 PhoU domain S96127_4293 PF00497 Bacterial extracellular solute-binding proteins, family 3 S96127_4294 PF00528 Binding-protein-dependent transport system inner membrane component S96127_4295 PF00528 Binding-protein-dependent transport system inner membrane component S96127_4296 PF13419 Haloacid dehalogenase-like hydrolase S96127_4297 PF00860 Permease family S96127_4300 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase S96127_4300 PF07055 Enoyl reductase FAD binding domain S96127_4300 PF12241 Trans-2-enoyl-CoA reductase catalytic region S96127_4301 PF12631 MnmE helical domain S96127_4301 PF01926 50S ribosome-binding GTPase S96127_4301 PF10396 GTP-binding protein TrmE N-terminus S96127_4302 PF14849 YidC periplasmic domain S96127_4302 PF02096 60Kd inner membrane protein S96127_4303 PF00825 Ribonuclease P S96127_4304 PF00468 Ribosomal protein L34 S96127_4320 PF03335 Phage tail fibre repeat S96127_4320 PF08400 Prophage tail fibre N-terminal S96127_4320 PF07484 Phage Tail Collar Domain S96127_4320 PF03335 Phage tail fibre repeat S96127_4320 PF08400 Prophage tail fibre N-terminal S96127_4320 PF07484 Phage Tail Collar Domain S96127_4322 PF02413 Caudovirales tail fibre assembly protein, lambda gpK S96127_4323 PF01695 IstB-like ATP binding protein S96127_4324 PF02796 Helix-turn-helix domain of resolvase S96127_4324 PF00665 Integrase core domain S96127_4329 PF00872 Transposase, Mutator family S96127_4331 PF01548 Transposase S96127_4331 PF02371 Transposase IS116/IS110/IS902 family S96127_4332 PF04754 Putative transposase, YhgA-like S96127_4333 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) S96127_4335 PF13091 PLD-like domain S96127_4337 PF04754 Putative transposase, YhgA-like S96127_4338 PF00239 Resolvase, N terminal domain S96127_4338 PF02796 Helix-turn-helix domain of resolvase S96127_4341 PF13614 AAA domain S96127_4341 PF18607 ParA helix turn helix domain S96127_4342 PF02195 ParB-like nuclease domain S96127_4342 PF08775 ParB family S96127_4346 PF01555 DNA methylase S96127_4348 PF07128 Protein of unknown function (DUF1380) S96127_4352 PF06006 Bacterial protein of unknown function (DUF905) S96127_4353 PF02195 ParB-like nuclease domain S96127_4354 PF02796 Helix-turn-helix domain of resolvase S96127_4354 PF00665 Integrase core domain S96127_4355 PF01695 IstB-like ATP binding protein S96127_4362 PF06445 GyrI-like small molecule binding domain S96127_4362 PF12833 Helix-turn-helix domain S96127_4363 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain S96127_4363 PF02753 Pili assembly chaperone PapD, C-terminal domain S96127_4365 PF00577 Outer membrane usher protein S96127_4365 PF13953 PapC C-terminal domain S96127_4365 PF13954 PapC N-terminal domain S96127_4366 PF09255 Caf1 Capsule antigen S96127_4370 PF06213 Cobalamin biosynthesis protein CobT S96127_4370 PF11775 Cobalamin biosynthesis protein CobT VWA domain S96127_4372 PF07733 Bacterial DNA polymerase III alpha NTPase domain S96127_4372 PF17657 Bacterial DNA polymerase III alpha subunit finger domain S96127_4372 PF02811 PHP domain S96127_4372 PF14579 Helix-hairpin-helix motif S96127_4379 PF01367 5'-3' exonuclease, C-terminal SAM fold S96127_4379 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain S96127_4381 PF00154 recA bacterial DNA recombination protein S96127_4390 PF01051 Initiator Replication protein S96127_4409 PF00270 DEAD/DEAH box helicase S96127_4409 PF17191 RecG wedge domain S96127_4409 PF00271 Helicase conserved C-terminal domain S96127_4410 PF02195 ParB-like nuclease domain S96127_4410 PF17762 HTH domain found in ParB protein S96127_4411 PF02195 ParB-like nuclease domain S96127_4411 PF17762 HTH domain found in ParB protein S96127_4412 PF00664 ABC transporter transmembrane region S96127_4412 PF00005 ABC transporter S96127_4412 PF03412 Peptidase C39 family S96127_4435 PF02796 Helix-turn-helix domain of resolvase S96127_4435 PF00239 Resolvase, N terminal domain S96127_4437 PF06381 Protein of unknown function (DUF1073) S96127_4438 PF04233 Phage Mu protein F like protein S96127_4459 PF03335 Phage tail fibre repeat S96127_4459 PF07484 Phage Tail Collar Domain S96127_4459 PF08400 Prophage tail fibre N-terminal S96127_4460 PF02413 Caudovirales tail fibre assembly protein, lambda gpK S96127_4461 PF01757 Acyltransferase family S96127_4471 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system S96127_4472 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system S96127_4478 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term S96127_4479 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term S96127_4480 PF02120 Flagellar hook-length control protein FliK S96127_4481 PF02120 Flagellar hook-length control protein FliK S96127_4482 PF07321 Type III secretion protein YscO S96127_4483 PF18269 T3SS EscN ATPase C-terminal domain S96127_4483 PF02874 ATP synthase alpha/beta family, beta-barrel domain S96127_4483 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S96127_4484 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S96127_4484 PF02874 ATP synthase alpha/beta family, beta-barrel domain S96127_4484 PF18269 T3SS EscN ATPase C-terminal domain S96127_4485 PF18269 T3SS EscN ATPase C-terminal domain S96127_4485 PF02874 ATP synthase alpha/beta family, beta-barrel domain S96127_4485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S96127_4486 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S96127_4486 PF02874 ATP synthase alpha/beta family, beta-barrel domain S96127_4486 PF18269 T3SS EscN ATPase C-terminal domain S96127_4487 PF07201 HrpJ-like domain S96127_4488 PF09059 TyeA S96127_4490 PF09474 Type III secretion system YscX (type_III_YscX) S96127_4492 PF00771 FHIPEP family S96127_4493 PF09621 Type III secretion system regulator (LcrR) S96127_4494 PF07216 LcrG protein S96127_4495 PF04792 V antigen (LcrV) protein S96127_4496 PF07720 Tetratricopeptide repeat S96127_4497 PF04888 Secretion system effector C (SseC) like family S96127_4498 PF05844 YopD protein S96127_4502 PF12468 Type III secretion system leucine rich repeat protein S96127_4506 PF05932 Tir chaperone protein (CesT) family S96127_4507 PF03543 Yersinia/Haemophilus virulence surface antigen S96127_4509 PF05818 Enterobacterial TraT complement resistance protein S96127_4510 PF05818 Enterobacterial TraT complement resistance protein S96127_4512 PF13276 HTH-like domain S96127_4512 PF00665 Integrase core domain S96127_4512 PF13333 Integrase core domain S96127_4514 PF13614 AAA domain S96127_4515 PF02195 ParB-like nuclease domain S96127_4515 PF18090 Centromere-binding protein HTH domain S96127_4518 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH S96127_4520 PF03545 Yersinia virulence determinant (YopE) S96127_4520 PF09020 YopE, N terminal S96127_4521 PF05932 Tir chaperone protein (CesT) family S96127_4522 PF13276 HTH-like domain S96127_4522 PF13683 Integrase core domain S96127_4523 PF00665 Integrase core domain S96127_4524 PF01695 IstB-like ATP binding protein S96127_4526 PF13683 Integrase core domain S96127_4526 PF13276 HTH-like domain S96127_4527 PF01527 Transposase S96127_4530 PF02796 Helix-turn-helix domain of resolvase S96127_4530 PF00239 Resolvase, N terminal domain S96127_4531 PF01526 Tn3 transposase DDE domain S96127_4531 PF13700 Domain of unknown function (DUF4158) S96127_4533 PF05658 Head domain of trimeric autotransporter adhesin S96127_4533 PF03895 YadA-like membrane anchor domain S96127_4533 PF05662 Coiled stalk of trimeric autotransporter adhesin S96127_4534 PF05658 Head domain of trimeric autotransporter adhesin S96127_4534 PF05662 Coiled stalk of trimeric autotransporter adhesin S96127_4534 PF03895 YadA-like membrane anchor domain S96127_4537 PF08751 TrwC relaxase S96127_4537 PF18340 DNA relaxase TraI 2B/2B-like domain S96127_4537 PF07057 DNA helicase TraI S96127_4537 PF18272 single-stranded DNA binding TraI N-terminal subdomain S96127_4541 PF10723 Replication regulatory protein RepB S96127_4542 PF02387 IncFII RepA protein family S96127_4545 PF00069 Protein kinase domain S96127_4545 PF09632 Rac1-binding domain S96127_4546 PF03421 YopJ Serine/Threonine acetyltransferase S96127_4547 PF13683 Integrase core domain S96127_4547 PF13276 HTH-like domain S96127_4548 PF13005 zinc-finger binding domain of transposase IS66 S96127_4548 PF03050 Transposase IS66 family S96127_4548 PF13007 Transposase C of IS166 homeodomain S96127_4548 PF13817 IS66 C-terminal element S96127_4549 PF09013 YopH, N-terminal S96127_4549 PF00102 Protein-tyrosine phosphatase S96127_4551 PF13276 HTH-like domain S96127_4551 PF13683 Integrase core domain S96127_4553 PF01527 Transposase S96127_4554 PF09013 YopH, N-terminal S96127_4555 PF02108 Flagellar assembly protein FliH S96127_4556 PF06578 YOP proteins translocation protein K (YscK) S96127_4557 PF01514 Secretory protein of YscJ/FliF family S96127_4558 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI S96127_4559 PF09025 YopR, type III needle-polymerisation regulator S96127_4560 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) S96127_4561 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF S96127_4562 PF08988 Type III secretion system, cytoplasmic E component of needle S96127_4563 PF16697 Inner membrane component of T3SS, cytoplasmic domain S96127_4563 PF16693 Inner membrane component of T3SS, periplasmic domain S96127_4564 PF03958 Bacterial type II/III secretion system short domain S96127_4564 PF00263 Bacterial type II and III secretion system protein S96127_4565 PF05932 Tir chaperone protein (CesT) family S96127_4566 PF02311 AraC-like ligand binding domain S96127_4566 PF12833 Helix-turn-helix domain S96127_4567 PF09619 Type III secretion system lipoprotein chaperone (YscW) S96127_4568 PF01312 FlhB HrpN YscU SpaS Family S96127_4569 PF01311 Bacterial export proteins, family 1 S96127_4570 PF01313 Bacterial export proteins, family 3 S96127_4571 PF00813 FliP family S96127_4573 PF01278 Omptin family S96127_4577 PF01815 Rop protein S96127_4578 PF01695 IstB-like ATP binding protein S96127_4579 PF00665 Integrase core domain S96127_4579 PF02796 Helix-turn-helix domain of resolvase