locus-tag class description YPZ3_0001 IPR008254 Flavodoxin/nitric oxide synthase YPZ3_0001 IPR029039 Flavoprotein-like superfamily YPZ3_0002 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0002 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0002 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPZ3_0002 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPZ3_0002 IPR019888 Transcription regulator AsnC-type YPZ3_0002 IPR011008 Dimeric alpha-beta barrel YPZ3_0002 IPR000485 AsnC-type HTH domain YPZ3_0002 IPR011991 ArsR-like helix-turn-helix domain YPZ3_0003 IPR006195 Aminoacyl-tRNA synthetase, class II YPZ3_0003 IPR004618 Aspartate--ammonia ligase YPZ3_0004 IPR002035 von Willebrand factor, type A YPZ3_0004 IPR008912 Uncharacterised protein family CoxE-like YPZ3_0004 IPR036465 von Willebrand factor A-like domain superfamily YPZ3_0004 IPR023481 Uncharacterised protein family ViaA YPZ3_0005 IPR011704 ATPase, dynein-related, AAA domain YPZ3_0005 IPR041538 ATPase RavA-like, AAA lid domain YPZ3_0005 IPR023671 ATPase RavA YPZ3_0005 IPR022547 ATPase, RavA, C-terminal YPZ3_0005 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0005 IPR003593 AAA+ ATPase domain YPZ3_0006 IPR023051 Potassium uptake protein, low affinity, Kup YPZ3_0006 IPR003855 Potassium transporter YPZ3_0007 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU YPZ3_0007 IPR023750 RbsD-like superfamily YPZ3_0007 IPR023064 D-ribose pyranase YPZ3_0008 IPR029056 Ribokinase-like YPZ3_0008 IPR002139 Ribokinase/fructokinase YPZ3_0008 IPR011611 Carbohydrate kinase PfkB YPZ3_0008 IPR011877 Ribokinase YPZ3_0008 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPZ3_0009 IPR020846 Major facilitator superfamily domain YPZ3_0009 IPR036259 MFS transporter superfamily YPZ3_0009 IPR011701 Major facilitator superfamily YPZ3_0009 IPR004638 Drug resistance transporter EmrB-like YPZ3_0010 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0010 IPR011711 GntR, C-terminal YPZ3_0010 IPR008920 Transcription regulator FadR/GntR, C-terminal YPZ3_0010 IPR000524 Transcription regulator HTH, GntR YPZ3_0010 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0011 IPR001207 Transposase, mutator type YPZ3_0012 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0012 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain YPZ3_0013 IPR025877 MobA-like NTP transferase YPZ3_0013 IPR013482 Molybdenum cofactor guanylyltransferase YPZ3_0013 IPR029044 Nucleotide-diphospho-sugar transferases YPZ3_0014 IPR032882 SrkA/RdoA protein kinase YPZ3_0014 IPR011009 Protein kinase-like domain superfamily YPZ3_0014 IPR002575 Aminoglycoside phosphotransferase YPZ3_0015 IPR001853 DSBA-like thioredoxin domain YPZ3_0015 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL YPZ3_0015 IPR036249 Thioredoxin-like superfamily YPZ3_0015 IPR017937 Thioredoxin, conserved site YPZ3_0015 IPR013766 Thioredoxin domain YPZ3_0016 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPZ3_0016 IPR002298 DNA polymerase A YPZ3_0016 IPR018320 DNA polymerase 1 YPZ3_0016 IPR020045 DNA polymerase I-like, H3TH domain YPZ3_0016 IPR002562 3'-5' exonuclease domain YPZ3_0016 IPR001098 DNA-directed DNA polymerase, family A, palm domain YPZ3_0016 IPR019760 DNA-directed DNA polymerase, family A, conserved site YPZ3_0016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPZ3_0016 IPR036397 Ribonuclease H superfamily YPZ3_0016 IPR012337 Ribonuclease H-like superfamily YPZ3_0016 IPR008918 Helix-hairpin-helix motif, class 2 YPZ3_0016 IPR002421 5'-3' exonuclease, N-terminal YPZ3_0016 IPR029060 PIN-like domain superfamily YPZ3_0017 IPR002686 Transposase IS200-like YPZ3_0017 IPR036515 Transposase IS200-like superfamily YPZ3_0018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0018 IPR006073 GTP binding domain YPZ3_0018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC YPZ3_0018 IPR030393 EngB-type guanine nucleotide-binding (G) domain YPZ3_0019 IPR007336 Der GTPase activator YPZ3_0020 IPR007197 Radical SAM YPZ3_0020 IPR023404 Radical SAM, alpha/beta horseshoe YPZ3_0020 IPR006638 Elp3/MiaB/NifB YPZ3_0020 IPR034505 Anaerobic coproporphyrinogen-III oxidase YPZ3_0020 IPR010723 HemN, C-terminal YPZ3_0020 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN YPZ3_0021 IPR002197 DNA binding HTH domain, Fis-type YPZ3_0021 IPR011006 CheY-like superfamily YPZ3_0021 IPR003593 AAA+ ATPase domain YPZ3_0021 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPZ3_0021 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0021 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPZ3_0021 IPR002078 RNA polymerase sigma factor 54 interaction domain YPZ3_0021 IPR025944 Sigma-54 interaction domain, conserved site YPZ3_0021 IPR010114 DNA-binding transcriptional regulator NtrC YPZ3_0021 IPR009057 Homeobox-like domain superfamily YPZ3_0021 IPR001789 Signal transduction response regulator, receiver domain YPZ3_0022 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_0022 IPR005467 Histidine kinase domain YPZ3_0022 IPR035965 PAS domain superfamily YPZ3_0022 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_0022 IPR000014 PAS domain YPZ3_0022 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_0022 IPR013767 PAS fold YPZ3_0022 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_0022 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_0023 IPR036651 Glutamine synthetase, N-terminal domain superfamily YPZ3_0023 IPR027303 Glutamine synthetase, glycine-rich site YPZ3_0023 IPR004809 Glutamine synthetase type I YPZ3_0023 IPR008146 Glutamine synthetase, catalytic domain YPZ3_0023 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YPZ3_0023 IPR001637 Glutamine synthetase class-I, adenylation site YPZ3_0023 IPR008147 Glutamine synthetase, beta-Grasp domain YPZ3_0023 IPR027302 Glutamine synthetase, N-terminal conserved site YPZ3_0025 IPR006439 HAD hydrolase, subfamily IA YPZ3_0025 IPR041492 Haloacid dehalogenase-like hydrolase YPZ3_0025 IPR036412 HAD-like superfamily YPZ3_0025 IPR023214 HAD superfamily YPZ3_0025 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPZ3_0026 IPR017039 Virulence factor BrkB YPZ3_0026 IPR023679 Uncharacterised protein family UPF0761, bacterial YPZ3_0027 IPR003732 D-aminoacyl-tRNA deacylase DTD YPZ3_0027 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily YPZ3_0028 IPR003593 AAA+ ATPase domain YPZ3_0028 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_0028 IPR002611 IstB-like ATP-binding protein YPZ3_0028 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0028 IPR001270 ClpA/B family YPZ3_0029 IPR036397 Ribonuclease H superfamily YPZ3_0029 IPR012337 Ribonuclease H-like superfamily YPZ3_0029 IPR017894 HTH domain, IS21 transposase-type YPZ3_0029 IPR001584 Integrase, catalytic core YPZ3_0029 IPR006120 Resolvase, HTH domain YPZ3_0030 IPR012660 Thioesterase, putative YPZ3_0030 IPR029069 HotDog domain superfamily YPZ3_0030 IPR016181 Acyl-CoA N-acyltransferase YPZ3_0030 IPR000182 GNAT domain YPZ3_0031 IPR007844 AsmA YPZ3_0032 IPR006043 Xanthine/uracil/vitamin C permease YPZ3_0032 IPR006042 Xanthine/uracil permease YPZ3_0033 IPR004445 Sodium/glutamate symport carrier protein GltS YPZ3_0034 IPR033454 RecG, wedge domain YPZ3_0034 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0034 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_0034 IPR012340 Nucleic acid-binding, OB-fold YPZ3_0034 IPR001650 Helicase, C-terminal YPZ3_0034 IPR004609 ATP-dependent DNA helicase RecG YPZ3_0034 IPR011545 DEAD/DEAH box helicase domain YPZ3_0035 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal YPZ3_0035 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPZ3_0035 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase YPZ3_0035 IPR029028 Alpha/beta knot methyltransferases YPZ3_0035 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPZ3_0036 IPR007685 RelA/SpoT YPZ3_0036 IPR012675 Beta-grasp domain superfamily YPZ3_0036 IPR033655 RelA, TGS domain YPZ3_0036 IPR012676 TGS-like YPZ3_0036 IPR004095 TGS YPZ3_0036 IPR002912 ACT domain YPZ3_0036 IPR004811 RelA/SpoT family YPZ3_0036 IPR003607 HD/PDEase domain YPZ3_0037 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YPZ3_0037 IPR008144 Guanylate kinase-like domain YPZ3_0037 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0037 IPR020590 Guanylate kinase, conserved site YPZ3_0037 IPR017665 Guanylate kinase YPZ3_0038 IPR013839 NAD-dependent DNA ligase, adenylation YPZ3_0038 IPR020923 DNA ligase B YPZ3_0038 IPR012340 Nucleic acid-binding, OB-fold YPZ3_0038 IPR004150 NAD-dependent DNA ligase, OB-fold YPZ3_0038 IPR010994 RuvA domain 2-like YPZ3_0038 IPR013840 NAD-dependent DNA ligase, N-terminal YPZ3_0039 IPR005115 Uncharacterised domain UPF0126 YPZ3_0040 IPR013527 YicC-like, N-terminal YPZ3_0040 IPR013551 Domain of unknown function DUF1732 YPZ3_0040 IPR005229 Conserved hypothetical protein CHP00255 YPZ3_0041 IPR036345 Exoribonuclease, PH domain 2 superfamily YPZ3_0041 IPR018336 Ribonuclease PH, conserved site YPZ3_0041 IPR002381 Ribonuclease PH, bacterial-type YPZ3_0041 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_0041 IPR027408 PNPase/RNase PH domain superfamily YPZ3_0041 IPR001247 Exoribonuclease, phosphorolytic domain 1 YPZ3_0041 IPR015847 Exoribonuclease, phosphorolytic domain 2 YPZ3_0042 IPR029057 Phosphoribosyltransferase-like YPZ3_0042 IPR004467 Orotate phosphoribosyl transferase domain YPZ3_0042 IPR023031 Orotate phosphoribosyltransferase YPZ3_0042 IPR000836 Phosphoribosyltransferase domain YPZ3_0043 IPR023769 Nucleoid occlusion factor SlmA YPZ3_0043 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPZ3_0043 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPZ3_0043 IPR009057 Homeobox-like domain superfamily YPZ3_0043 IPR001647 DNA-binding HTH domain, TetR-type YPZ3_0044 IPR029054 dUTPase-like YPZ3_0044 IPR036157 dUTPase-like superfamily YPZ3_0044 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase YPZ3_0044 IPR033704 dUTPase, trimeric YPZ3_0045 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal YPZ3_0045 IPR035929 CoaB-like superfamily YPZ3_0045 IPR003382 Flavoprotein YPZ3_0045 IPR036551 Flavin prenyltransferase-like YPZ3_0045 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC YPZ3_0046 IPR020891 Uncharacterised protein family UPF0758, conserved site YPZ3_0046 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily YPZ3_0046 IPR010994 RuvA domain 2-like YPZ3_0046 IPR025657 RadC-like JAB domain YPZ3_0046 IPR037518 MPN domain YPZ3_0046 IPR001405 Uncharacterised protein family UPF0758 YPZ3_0047 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type YPZ3_0047 IPR010663 Zinc finger, FPG/IleRS-type YPZ3_0047 IPR010979 Ribosomal protein S13-like, H2TH YPZ3_0047 IPR035937 MutM-like, N-terminal YPZ3_0047 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain YPZ3_0047 IPR020629 Formamidopyrimidine-DNA glycosylase YPZ3_0047 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site YPZ3_0047 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding YPZ3_0048 IPR004821 Cytidyltransferase-like domain YPZ3_0048 IPR001980 Phosphopantetheine adenylyltransferase YPZ3_0048 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_0049 IPR029044 Nucleotide-diphospho-sugar transferases YPZ3_0049 IPR001173 Glycosyltransferase 2-like YPZ3_0050 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily YPZ3_0050 IPR039901 3-deoxy-D-manno-octulosonic acid transferase YPZ3_0050 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal YPZ3_0051 IPR002201 Glycosyl transferase, family 9 YPZ3_0051 IPR011908 Lipopolysaccharide heptosyltransferase I YPZ3_0052 IPR011910 ADP-heptose--LPS heptosyltransferase 2 YPZ3_0052 IPR002201 Glycosyl transferase, family 9 YPZ3_0053 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase YPZ3_0053 IPR036291 NAD(P)-binding domain superfamily YPZ3_0053 IPR001509 NAD-dependent epimerase/dehydratase YPZ3_0054 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_0054 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_0054 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase YPZ3_0054 IPR004839 Aminotransferase, class I/classII YPZ3_0054 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPZ3_0054 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_0055 IPR020843 Polyketide synthase, enoylreductase domain YPZ3_0055 IPR036291 NAD(P)-binding domain superfamily YPZ3_0055 IPR004627 L-threonine 3-dehydrogenase YPZ3_0055 IPR011032 GroES-like superfamily YPZ3_0055 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site YPZ3_0055 IPR013154 Alcohol dehydrogenase, N-terminal YPZ3_0055 IPR013149 Alcohol dehydrogenase, C-terminal YPZ3_0056 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPZ3_0056 IPR006837 Divergent polysaccharide deacetylase YPZ3_0057 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPZ3_0057 IPR006837 Divergent polysaccharide deacetylase YPZ3_0058 IPR016047 Peptidase M23 YPZ3_0058 IPR011055 Duplicated hybrid motif YPZ3_0059 IPR006124 Metalloenzyme YPZ3_0059 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent YPZ3_0059 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily YPZ3_0059 IPR011258 BPG-independent PGAM, N-terminal YPZ3_0059 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPZ3_0060 IPR001763 Rhodanese-like domain YPZ3_0060 IPR036873 Rhodanese-like domain superfamily YPZ3_0061 IPR003708 Bacterial protein export chaperone SecB YPZ3_0061 IPR035958 SecB-like superfamily YPZ3_0062 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPZ3_0062 IPR036291 NAD(P)-binding domain superfamily YPZ3_0062 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal YPZ3_0062 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal YPZ3_0062 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent YPZ3_0062 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPZ3_0063 IPR011004 Trimeric LpxA-like superfamily YPZ3_0063 IPR010493 Serine acetyltransferase, N-terminal YPZ3_0063 IPR018357 Hexapeptide transferase, conserved site YPZ3_0063 IPR001451 Hexapeptide repeat YPZ3_0063 IPR042122 Serine acetyltransferase, N-terminal domain superfamily YPZ3_0063 IPR005881 Serine O-acetyltransferase YPZ3_0064 IPR029028 Alpha/beta knot methyltransferases YPZ3_0064 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPZ3_0064 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase YPZ3_0064 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPZ3_0065 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain YPZ3_0065 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily YPZ3_0065 IPR004026 Ada DNA repair, metal-binding YPZ3_0065 IPR016221 Bifunctional regulatory protein Ada YPZ3_0065 IPR035451 Ada-like domain superfamily YPZ3_0065 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site YPZ3_0065 IPR018060 DNA binding HTH domain, AraC-type YPZ3_0065 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPZ3_0065 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0065 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain YPZ3_0065 IPR018062 HTH domain AraC-type, conserved site YPZ3_0065 IPR009057 Homeobox-like domain superfamily YPZ3_0066 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_0066 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_0066 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_0066 IPR005467 Histidine kinase domain YPZ3_0066 IPR032404 Two-component sensor protein CpxA, periplasmic domain YPZ3_0066 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_0066 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_0066 IPR003660 HAMP domain YPZ3_0066 IPR038515 CpxA, periplasmic domain superfamily YPZ3_0067 IPR001867 OmpR/PhoB-type DNA-binding domain YPZ3_0067 IPR011006 CheY-like superfamily YPZ3_0067 IPR001789 Signal transduction response regulator, receiver domain YPZ3_0067 IPR039420 Transcriptional regulatory protein WalR-like YPZ3_0067 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0068 IPR012899 LTXXQ motif family protein YPZ3_0069 IPR010106 Recombination-promoting nuclease RpnA YPZ3_0069 IPR006842 Transposase (putative), YhgA-like YPZ3_0070 IPR027470 Cation efflux protein, cytoplasmic domain YPZ3_0070 IPR036837 Cation efflux protein, cytoplasmic domain superfamily YPZ3_0070 IPR027469 Cation efflux transmembrane domain superfamily YPZ3_0070 IPR023783 Cation efflux pump FieF YPZ3_0070 IPR002524 Cation efflux protein YPZ3_0071 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type YPZ3_0071 IPR000023 Phosphofructokinase domain YPZ3_0071 IPR035966 Phosphofructokinase superfamily YPZ3_0071 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic YPZ3_0071 IPR022953 ATP-dependent 6-phosphofructokinase YPZ3_0071 IPR015912 Phosphofructokinase, conserved site YPZ3_0072 IPR005669 Thiosulphate/Sulfate-binding protein YPZ3_0072 IPR000957 Sulphate/thiosulphate-binding, conserved site YPZ3_0072 IPR034408 Sulphate/thiosulphate-binding site YPZ3_0074 IPR001898 Solute carrier family 13 YPZ3_0074 IPR030676 Citrate carrier CitT-related YPZ3_0075 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily YPZ3_0075 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase YPZ3_0075 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein YPZ3_0076 IPR024078 Putative deacetylase LmbE-like domain superfamily YPZ3_0076 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related YPZ3_0077 IPR005119 LysR, substrate-binding YPZ3_0077 IPR000847 Transcription regulator HTH, LysR YPZ3_0077 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0077 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0078 IPR020861 Triosephosphate isomerase, active site YPZ3_0078 IPR035990 Triosephosphate isomerase superfamily YPZ3_0078 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic YPZ3_0078 IPR000652 Triosephosphate isomerase YPZ3_0078 IPR013785 Aldolase-type TIM barrel YPZ3_0079 IPR009918 Protein of unknown function DUF1454 YPZ3_0080 IPR008523 Protein of unknown function DUF805 YPZ3_0081 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPZ3_0081 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPZ3_0081 IPR033892 Ferredoxin--NADP reductase, bacteria YPZ3_0081 IPR017938 Riboflavin synthase-like beta-barrel YPZ3_0081 IPR017927 FAD-binding domain, ferredoxin reductase-type YPZ3_0081 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPZ3_0082 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase YPZ3_0083 IPR000577 Carbohydrate kinase, FGGY YPZ3_0083 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPZ3_0083 IPR005999 Glycerol kinase YPZ3_0083 IPR018483 Carbohydrate kinase, FGGY, conserved site YPZ3_0083 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPZ3_0084 IPR000425 Major intrinsic protein YPZ3_0084 IPR022357 Major intrinsic protein, conserved site YPZ3_0084 IPR023271 Aquaporin-like YPZ3_0086 IPR003439 ABC transporter-like YPZ3_0086 IPR003593 AAA+ ATPase domain YPZ3_0086 IPR011527 ABC transporter type 1, transmembrane domain YPZ3_0086 IPR005074 Peptidase C39, bacteriocin processing YPZ3_0086 IPR017871 ABC transporter, conserved site YPZ3_0086 IPR033838 Colicin V processing peptidase YPZ3_0086 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPZ3_0086 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0086 IPR039421 Type I protein exporter YPZ3_0087 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPZ3_0087 IPR006144 Secretion protein HlyD, conserved site YPZ3_0089 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily YPZ3_0089 IPR010203 Regulator of ribonuclease activity A YPZ3_0089 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein YPZ3_0089 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria YPZ3_0090 IPR000537 UbiA prenyltransferase family YPZ3_0090 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase YPZ3_0090 IPR026046 UbiA prenyltransferase domain containing protein 1 YPZ3_0091 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0091 IPR004491 Heat shock protein HslU YPZ3_0091 IPR019489 Clp ATPase, C-terminal YPZ3_0091 IPR003593 AAA+ ATPase domain YPZ3_0091 IPR003959 ATPase, AAA-type, core YPZ3_0092 IPR022281 ATP-dependent protease, HslV subunit YPZ3_0092 IPR029055 Nucleophile aminohydrolases, N-terminal YPZ3_0092 IPR001353 Proteasome, subunit alpha/beta YPZ3_0092 IPR023333 Proteasome B-type subunit YPZ3_0093 IPR011930 Cell division protein FtsN YPZ3_0093 IPR036680 Sporulation-like domain superfamily YPZ3_0093 IPR007730 Sporulation-like domain YPZ3_0094 IPR028082 Periplasmic binding protein-like I YPZ3_0094 IPR000843 LacI-type HTH domain YPZ3_0094 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_0095 IPR011545 DEAD/DEAH box helicase domain YPZ3_0095 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain YPZ3_0095 IPR041236 Primosomal protein N, C-terminal domain YPZ3_0095 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_0095 IPR041222 Primosomal protein N', 3' DNA-binding domain YPZ3_0095 IPR005259 Primosomal protein N' YPZ3_0095 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0095 IPR001650 Helicase, C-terminal YPZ3_0095 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily YPZ3_0096 IPR038972 Inner membrane protein YiaA-like YPZ3_0096 IPR008024 YiaAB two helix YPZ3_0097 IPR023453 Methionine repressor MetJ domain superfamily YPZ3_0097 IPR010985 Ribbon-helix-helix YPZ3_0097 IPR002084 Methionine repressor MetJ YPZ3_0098 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_0098 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_0098 IPR011821 O-succinylhomoserine (thiol)-lyase YPZ3_0098 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_0098 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPZ3_0099 IPR001048 Aspartate/glutamate/uridylate kinase YPZ3_0099 IPR001341 Aspartate kinase YPZ3_0099 IPR018042 Aspartate kinase, conserved site YPZ3_0099 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I YPZ3_0099 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding YPZ3_0099 IPR001342 Homoserine dehydrogenase, catalytic YPZ3_0099 IPR019811 Homoserine dehydrogenase, conserved site YPZ3_0099 IPR036393 Acetylglutamate kinase-like superfamily YPZ3_0099 IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain YPZ3_0099 IPR036291 NAD(P)-binding domain superfamily YPZ3_0100 IPR029041 FAD-linked oxidoreductase-like YPZ3_0100 IPR004620 5,10-methylenetetrahydrofolate reductase YPZ3_0100 IPR003171 Methylenetetrahydrofolate reductase YPZ3_0101 IPR025948 HTH-like domain YPZ3_0101 IPR038965 Transposase InsF-like YPZ3_0101 IPR001584 Integrase, catalytic core YPZ3_0101 IPR036397 Ribonuclease H superfamily YPZ3_0101 IPR012337 Ribonuclease H-like superfamily YPZ3_0103 IPR001034 DeoR-type HTH domain YPZ3_0103 IPR014036 DeoR C-terminal sensor domain YPZ3_0103 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPZ3_0103 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0103 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0103 IPR037171 NagB/RpiA transferase-like YPZ3_0104 IPR022764 Peptidase S54, rhomboid domain YPZ3_0104 IPR035952 Rhomboid-like superfamily YPZ3_0104 IPR022732 Peptidase S54, GlpG peptidase, N-terminal YPZ3_0104 IPR023662 Rhomboid protease GlpG YPZ3_0104 IPR038236 GlpG peptidase, N-terminal domain superfamily YPZ3_0105 IPR001763 Rhodanese-like domain YPZ3_0105 IPR036873 Rhodanese-like domain superfamily YPZ3_0105 IPR023695 Thiosulfate sulfurtransferase, bacterial YPZ3_0106 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0106 IPR000792 Transcription regulator LuxR, C-terminal YPZ3_0106 IPR023768 Transcriptional regulator HTH-type, MalT YPZ3_0106 IPR041617 MalT-like TPR region YPZ3_0106 IPR011990 Tetratricopeptide-like helical domain superfamily YPZ3_0106 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0106 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_0107 IPR035090 Phosphorylase pyridoxal-phosphate attachment site YPZ3_0107 IPR011833 Glycogen/starch/alpha-glucan phosphorylase YPZ3_0107 IPR000811 Glycosyl transferase, family 35 YPZ3_0108 IPR035090 Phosphorylase pyridoxal-phosphate attachment site YPZ3_0108 IPR000811 Glycosyl transferase, family 35 YPZ3_0108 IPR011833 Glycogen/starch/alpha-glucan phosphorylase YPZ3_0109 IPR017853 Glycoside hydrolase superfamily YPZ3_0109 IPR003385 Glycoside hydrolase, family 77 YPZ3_0110 IPR017726 Fe/S biogenesis protein NfuA YPZ3_0110 IPR034904 Fe-S cluster assembly domain superfamily YPZ3_0110 IPR035903 HesB-like domain superfamily YPZ3_0110 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal YPZ3_0110 IPR000361 FeS cluster biogenesis YPZ3_0111 IPR029057 Phosphoribosyltransferase-like YPZ3_0111 IPR000836 Phosphoribosyltransferase domain YPZ3_0111 IPR005222 Competence protein ComF YPZ3_0112 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase YPZ3_0112 IPR000073 Alpha/beta hydrolase fold-1 YPZ3_0112 IPR029058 Alpha/Beta hydrolase fold YPZ3_0113 IPR011640 Ferrous iron transport protein B, C-terminal YPZ3_0113 IPR041069 FeoB, cytosolic helical domain YPZ3_0113 IPR003373 Ferrous iron transport protein B YPZ3_0113 IPR030389 FeoB-type guanine nucleotide-binding (G) domain YPZ3_0113 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain YPZ3_0113 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0113 IPR005225 Small GTP-binding protein domain YPZ3_0114 IPR023319 Tex-like protein, HTH domain superfamily YPZ3_0114 IPR018974 Tex-like protein, N-terminal YPZ3_0114 IPR012340 Nucleic acid-binding, OB-fold YPZ3_0114 IPR032639 Tex protein, YqgF-like domain YPZ3_0114 IPR006641 YqgF/RNase H-like domain YPZ3_0114 IPR037027 YqgF/RNase H-like domain superfamily YPZ3_0114 IPR041692 HHH domain 9 YPZ3_0114 IPR003029 S1 domain YPZ3_0114 IPR023323 Tex-like domain superfamily YPZ3_0114 IPR012337 Ribonuclease H-like superfamily YPZ3_0114 IPR022967 RNA-binding domain, S1 YPZ3_0114 IPR010994 RuvA domain 2-like YPZ3_0115 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal YPZ3_0115 IPR006358 Transcription elongation factor GreB YPZ3_0115 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily YPZ3_0115 IPR018151 Transcription elongation factor, GreA/GreB, conserved site YPZ3_0115 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily YPZ3_0115 IPR028624 Transcription elongation factor GreA/GreB YPZ3_0115 IPR023459 Transcription elongation factor GreA/GreB family YPZ3_0115 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPZ3_0116 IPR039420 Transcriptional regulatory protein WalR-like YPZ3_0116 IPR011006 CheY-like superfamily YPZ3_0116 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_0116 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0116 IPR001789 Signal transduction response regulator, receiver domain YPZ3_0116 IPR001867 OmpR/PhoB-type DNA-binding domain YPZ3_0117 IPR005467 Histidine kinase domain YPZ3_0117 IPR003660 HAMP domain YPZ3_0117 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_0117 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_0117 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_0117 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_0117 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_0118 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising YPZ3_0118 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal YPZ3_0118 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal YPZ3_0118 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site YPZ3_0119 IPR016154 Heat shock protein Hsp33, C-terminal YPZ3_0119 IPR000397 Heat shock protein Hsp33 YPZ3_0119 IPR016153 Heat shock protein Hsp33, N-terminal YPZ3_0119 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily YPZ3_0120 IPR036986 RNA-binding S4 domain superfamily YPZ3_0120 IPR002942 RNA-binding S4 domain YPZ3_0120 IPR025708 Heat shock protein 15 YPZ3_0121 IPR036412 HAD-like superfamily YPZ3_0121 IPR041492 Haloacid dehalogenase-like hydrolase YPZ3_0121 IPR023214 HAD superfamily YPZ3_0121 IPR006439 HAD hydrolase, subfamily IA YPZ3_0122 IPR010771 Intracellular growth attenuator IgaA YPZ3_0123 IPR000086 NUDIX hydrolase domain YPZ3_0123 IPR020084 NUDIX hydrolase, conserved site YPZ3_0123 IPR015797 NUDIX hydrolase-like domain superfamily YPZ3_0124 IPR012338 Beta-lactamase/transpeptidase-like YPZ3_0124 IPR023346 Lysozyme-like domain superfamily YPZ3_0124 IPR036950 Penicillin binding protein transglycosylase domain YPZ3_0124 IPR031376 Penicillin-binding protein, OB-like domain YPZ3_0124 IPR001460 Penicillin-binding protein, transpeptidase YPZ3_0124 IPR001264 Glycosyl transferase, family 51 YPZ3_0129 IPR005644 NolW-like YPZ3_0129 IPR004845 Type II secretion system GspD, conserved site YPZ3_0129 IPR011662 Secretin/TonB, short N-terminal domain YPZ3_0129 IPR013355 Type IV pilus secretin PilQ YPZ3_0129 IPR038591 NolW-like superfamily YPZ3_0129 IPR001775 GspD/PilQ family YPZ3_0129 IPR004846 Type II/III secretion system YPZ3_0130 IPR023000 Shikimate kinase, conserved site YPZ3_0130 IPR000623 Shikimate kinase/Threonine synthase-like 1 YPZ3_0130 IPR031322 Shikimate kinase/gluconokinase YPZ3_0130 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0131 IPR030963 3-dehydroquinate synthase family YPZ3_0131 IPR030960 3-dehydroquinate synthase domain YPZ3_0131 IPR016037 3-dehydroquinate synthase AroB YPZ3_0132 IPR007730 Sporulation-like domain YPZ3_0132 IPR036680 Sporulation-like domain superfamily YPZ3_0133 IPR012327 D12 class N6 adenine-specific DNA methyltransferase YPZ3_0133 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPZ3_0133 IPR023095 Adenine-specific methyltransferase, domain 2 YPZ3_0133 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_0133 IPR012263 Adenine modification methylase, M.EcoRV-type YPZ3_0134 IPR013785 Aldolase-type TIM barrel YPZ3_0134 IPR011060 Ribulose-phosphate binding barrel YPZ3_0134 IPR026019 Ribulose-phosphate 3-epimerase YPZ3_0134 IPR000056 Ribulose-phosphate 3-epimerase-like YPZ3_0135 IPR006439 HAD hydrolase, subfamily IA YPZ3_0135 IPR041492 Haloacid dehalogenase-like hydrolase YPZ3_0135 IPR023214 HAD superfamily YPZ3_0135 IPR036412 HAD-like superfamily YPZ3_0135 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPZ3_0135 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic YPZ3_0135 IPR037512 Phosphoglycolate phosphatase, prokaryotic YPZ3_0136 IPR024109 Tryptophan-tRNA ligase, bacterial-type YPZ3_0136 IPR002306 Tryptophan-tRNA ligase YPZ3_0136 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_0136 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPZ3_0136 IPR002305 Aminoacyl-tRNA synthetase, class Ic YPZ3_0137 IPR014777 Tetrapyrrole methylase, subdomain 1 YPZ3_0137 IPR035996 Tetrapyrrole methylase superfamily YPZ3_0137 IPR028281 Siroheme synthase, central domain YPZ3_0137 IPR000878 Tetrapyrrole methylase YPZ3_0137 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site YPZ3_0137 IPR014776 Tetrapyrrole methylase, subdomain 2 YPZ3_0137 IPR006367 Sirohaem synthase, N-terminal YPZ3_0137 IPR019478 Sirohaem synthase, dimerisation domain YPZ3_0137 IPR012409 Sirohaem synthase YPZ3_0137 IPR037115 Sirohaem synthase, dimerisation domain superfamily YPZ3_0137 IPR006366 Uroporphyrin-III C-methyltransferase YPZ3_0137 IPR036291 NAD(P)-binding domain superfamily YPZ3_0138 IPR024002 Formate/nitrite transporter, conserved site YPZ3_0138 IPR000292 Formate/nitrite transporter YPZ3_0138 IPR023271 Aquaporin-like YPZ3_0139 IPR017881 Nitrite reductase (NADH) small subunit YPZ3_0139 IPR012748 Rieske-like [2Fe-2S] domain, NirD-type YPZ3_0139 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily YPZ3_0140 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal YPZ3_0140 IPR007419 BFD-like [2Fe-2S]-binding domain YPZ3_0140 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily YPZ3_0140 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_0140 IPR023753 FAD/NAD(P)-binding domain YPZ3_0140 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain YPZ3_0140 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily YPZ3_0140 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB YPZ3_0140 IPR017121 Nitrite reductase [NAD(P)H], large subunit YPZ3_0140 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site YPZ3_0140 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain YPZ3_0141 IPR032466 Metal-dependent hydrolase YPZ3_0141 IPR013108 Amidohydrolase 3 YPZ3_0141 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPZ3_0142 IPR023528 Major facilitator superfamily transporter, TsgA YPZ3_0142 IPR011701 Major facilitator superfamily YPZ3_0142 IPR036259 MFS transporter superfamily YPZ3_0142 IPR020846 Major facilitator superfamily domain YPZ3_0144 IPR028082 Periplasmic binding protein-like I YPZ3_0144 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_0144 IPR000843 LacI-type HTH domain YPZ3_0145 IPR019802 Glycoside hydrolase, family 4, conserved site YPZ3_0145 IPR001088 Glycoside hydrolase, family 4 YPZ3_0145 IPR022616 Glycosyl hydrolase, family 4, C-terminal YPZ3_0145 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal YPZ3_0145 IPR036291 NAD(P)-binding domain superfamily YPZ3_0146 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site YPZ3_0146 IPR029000 Cyclophilin-like domain superfamily YPZ3_0146 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain YPZ3_0147 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0147 IPR033186 Helicase HerA-like C-terminal YPZ3_0148 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain YPZ3_0148 IPR017926 Glutamine amidotransferase YPZ3_0148 IPR029062 Class I glutamine amidotransferase-like YPZ3_0149 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria YPZ3_0149 IPR005814 Aminotransferase class-III YPZ3_0149 IPR004636 Acetylornithine/Succinylornithine transaminase family YPZ3_0149 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_0149 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_0149 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_0150 IPR032692 Integral membrane protein YccS, N-terminal YPZ3_0150 IPR010020 Integral membrane protein, YccS/YhfK YPZ3_0151 IPR018488 Cyclic nucleotide-binding, conserved site YPZ3_0151 IPR000595 Cyclic nucleotide-binding domain YPZ3_0151 IPR012318 Crp-type HTH domain YPZ3_0151 IPR014710 RmlC-like jelly roll fold YPZ3_0151 IPR018335 Transcription regulator HTH, Crp-type, conserved site YPZ3_0151 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0151 IPR018490 Cyclic nucleotide-binding-like YPZ3_0151 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0152 IPR015946 K homology domain-like, alpha/beta YPZ3_0152 IPR036102 OsmC/Ohr superfamily YPZ3_0152 IPR003718 OsmC/Ohr family YPZ3_0154 IPR006083 Phosphoribulokinase/uridine kinase YPZ3_0154 IPR006082 Phosphoribulokinase YPZ3_0154 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0155 IPR029058 Alpha/Beta hydrolase fold YPZ3_0155 IPR012020 AB hydrolase 4 family YPZ3_0155 IPR000952 AB hydrolase 4, conserved site YPZ3_0155 IPR000073 Alpha/beta hydrolase fold-1 YPZ3_0156 IPR001123 Amino acid exporter protein, LeuE-type YPZ3_0157 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPZ3_0157 IPR010068 Taurine ABC transporter, substrate-binding protein TauA YPZ3_0157 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPZ3_0158 IPR003439 ABC transporter-like YPZ3_0158 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0158 IPR003593 AAA+ ATPase domain YPZ3_0158 IPR017871 ABC transporter, conserved site YPZ3_0158 IPR015859 ABC transporter, taurine import, TauD YPZ3_0159 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_0159 IPR035906 MetI-like superfamily YPZ3_0160 IPR003819 TauD/TfdA-like domain YPZ3_0160 IPR042098 Taurine dioxygenase TauD-like superfamily YPZ3_0162 IPR001173 Glycosyltransferase 2-like YPZ3_0162 IPR029044 Nucleotide-diphospho-sugar transferases YPZ3_0163 IPR003593 AAA+ ATPase domain YPZ3_0163 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0163 IPR032781 ABC-transporter extension domain YPZ3_0163 IPR003439 ABC transporter-like YPZ3_0163 IPR017871 ABC transporter, conserved site YPZ3_0164 IPR032781 ABC-transporter extension domain YPZ3_0164 IPR003439 ABC transporter-like YPZ3_0164 IPR017871 ABC transporter, conserved site YPZ3_0164 IPR003593 AAA+ ATPase domain YPZ3_0164 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0165 IPR029039 Flavoprotein-like superfamily YPZ3_0165 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG YPZ3_0165 IPR003680 Flavodoxin-like fold YPZ3_0166 IPR038770 Sodium/solute symporter superfamily YPZ3_0166 IPR020884 Glutathione-regulated potassium-efflux system protein KefB YPZ3_0166 IPR004771 K+/H+ exchanger YPZ3_0166 IPR006153 Cation/H+ exchanger YPZ3_0166 IPR036291 NAD(P)-binding domain superfamily YPZ3_0166 IPR003148 Regulator of K+ conductance, N-terminal YPZ3_0167 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPZ3_0168 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YPZ3_0168 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPZ3_0168 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily YPZ3_0169 IPR013559 YheO-like YPZ3_0169 IPR039445 Transcriptional regulator DauR-like, HTH domain YPZ3_0169 IPR039446 Transcriptional regulator DauR-like YPZ3_0170 IPR003787 Sulphur relay, DsrE/F-like protein YPZ3_0170 IPR027396 DsrEFH-like YPZ3_0170 IPR017463 Sulphur relay, TusD/DsrE YPZ3_0171 IPR027396 DsrEFH-like YPZ3_0171 IPR003787 Sulphur relay, DsrE/F-like protein YPZ3_0171 IPR037450 Sulphur relay, TusC YPZ3_0171 IPR017462 Sulphur relay, TusC/DsrF YPZ3_0172 IPR012340 Nucleic acid-binding, OB-fold YPZ3_0172 IPR006032 Ribosomal protein S12/S23 YPZ3_0172 IPR005679 Ribosomal protein S12, bacterial-type YPZ3_0173 IPR036823 Ribosomal protein S7 domain superfamily YPZ3_0173 IPR023798 Ribosomal protein S7 domain YPZ3_0173 IPR020606 Ribosomal protein S7, conserved site YPZ3_0173 IPR005717 Ribosomal protein S7, bacterial/organellar-type YPZ3_0173 IPR000235 Ribosomal protein S5/S7 YPZ3_0174 IPR004540 Translation elongation factor EFG/EF2 YPZ3_0174 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0174 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_0174 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPZ3_0174 IPR031157 Tr-type G domain, conserved site YPZ3_0174 IPR005225 Small GTP-binding protein domain YPZ3_0174 IPR004161 Translation elongation factor EFTu-like, domain 2 YPZ3_0174 IPR005517 Translation elongation factor EFG/EF2, domain IV YPZ3_0174 IPR000640 Elongation factor EFG, domain V-like YPZ3_0174 IPR000795 Transcription factor, GTP-binding domain YPZ3_0174 IPR035647 EF-G domain III/V-like YPZ3_0174 IPR009022 Elongation factor G, domain III YPZ3_0174 IPR041095 Elongation Factor G, domain II YPZ3_0174 IPR009000 Translation protein, beta-barrel domain superfamily YPZ3_0174 IPR035649 EFG, domain V YPZ3_0175 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YPZ3_0175 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPZ3_0175 IPR009000 Translation protein, beta-barrel domain superfamily YPZ3_0175 IPR000795 Transcription factor, GTP-binding domain YPZ3_0175 IPR005225 Small GTP-binding protein domain YPZ3_0175 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0175 IPR033720 Elongation factor Tu, domain 2 YPZ3_0175 IPR004161 Translation elongation factor EFTu-like, domain 2 YPZ3_0175 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain YPZ3_0175 IPR031157 Tr-type G domain, conserved site YPZ3_0175 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YPZ3_0176 IPR036515 Transposase IS200-like superfamily YPZ3_0176 IPR002686 Transposase IS200-like YPZ3_0177 IPR012347 Ferritin-like YPZ3_0177 IPR009040 Ferritin-like diiron domain YPZ3_0177 IPR009078 Ferritin-like superfamily YPZ3_0177 IPR008331 Ferritin/DPS protein domain YPZ3_0177 IPR002024 Bacterioferritin YPZ3_0178 IPR027486 Ribosomal protein S10 domain YPZ3_0178 IPR018268 Ribosomal protein S10, conserved site YPZ3_0178 IPR001848 Ribosomal protein S10 YPZ3_0178 IPR036838 Ribosomal protein S10 domain superfamily YPZ3_0179 IPR000597 Ribosomal protein L3 YPZ3_0179 IPR019927 Ribosomal protein L3, bacterial/organelle-type YPZ3_0179 IPR009000 Translation protein, beta-barrel domain superfamily YPZ3_0179 IPR019926 Ribosomal protein L3, conserved site YPZ3_0180 IPR013005 50S ribosomal protein uL4 YPZ3_0180 IPR002136 Ribosomal protein L4/L1e YPZ3_0180 IPR023574 Ribosomal protein L4 domain superfamily YPZ3_0181 IPR013025 Ribosomal protein L25/L23 YPZ3_0181 IPR001014 Ribosomal protein L23/L25, conserved site YPZ3_0181 IPR012678 Ribosomal protein L23/L15e core domain superfamily YPZ3_0181 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YPZ3_0182 IPR022669 Ribosomal protein L2, C-terminal YPZ3_0182 IPR022666 Ribosomal Proteins L2, RNA binding domain YPZ3_0182 IPR014722 Ribosomal protein L2, domain 2 YPZ3_0182 IPR012340 Nucleic acid-binding, OB-fold YPZ3_0182 IPR002171 Ribosomal protein L2 YPZ3_0182 IPR008991 Translation protein SH3-like domain superfamily YPZ3_0182 IPR014726 Ribosomal protein L2, domain 3 YPZ3_0182 IPR022671 Ribosomal protein L2, conserved site YPZ3_0182 IPR005880 Ribosomal protein L2, bacterial/organellar-type YPZ3_0183 IPR018260 Ribosomal protein L22/L17, conserved site YPZ3_0183 IPR036394 Ribosomal protein L22/L17 superfamily YPZ3_0183 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type YPZ3_0183 IPR001063 Ribosomal protein L22/L17 YPZ3_0184 IPR018280 Ribosomal protein S3, conserved site YPZ3_0184 IPR036419 Ribosomal protein S3, C-terminal domain superfamily YPZ3_0184 IPR001351 Ribosomal protein S3, C-terminal YPZ3_0184 IPR005704 Ribosomal protein S3, bacterial-type YPZ3_0184 IPR009019 K homology domain superfamily, prokaryotic type YPZ3_0184 IPR004087 K Homology domain YPZ3_0184 IPR004044 K Homology domain, type 2 YPZ3_0184 IPR015946 K homology domain-like, alpha/beta YPZ3_0185 IPR016180 Ribosomal protein L10e/L16 YPZ3_0185 IPR036920 Ribosomal protein L10e/L16 superfamily YPZ3_0185 IPR000114 Ribosomal protein L16 YPZ3_0185 IPR020798 Ribosomal protein L16, conserved site YPZ3_0186 IPR000218 Ribosomal protein L14P YPZ3_0186 IPR019972 Ribosomal protein L14P, conserved site YPZ3_0186 IPR036853 Ribosomal protein L14 superfamily YPZ3_0186 IPR005745 Ribosomal protein L14P, bacterial-type YPZ3_0187 IPR014722 Ribosomal protein L2, domain 2 YPZ3_0187 IPR005824 KOW YPZ3_0187 IPR003256 Ribosomal protein L24 YPZ3_0187 IPR005825 Ribosomal protein L24/L26, conserved site YPZ3_0187 IPR041988 Ribosomal Protein L26/L24, KOW domain YPZ3_0187 IPR008991 Translation protein SH3-like domain superfamily YPZ3_0188 IPR020930 Ribosomal protein L5, bacterial-type YPZ3_0188 IPR031310 Ribosomal protein L5, N-terminal YPZ3_0188 IPR022803 Ribosomal protein L5 domain superfamily YPZ3_0188 IPR031309 Ribosomal protein L5, C-terminal YPZ3_0188 IPR002132 Ribosomal protein L5 YPZ3_0189 IPR023036 Ribosomal protein S14, bacterial/plastid YPZ3_0189 IPR001209 Ribosomal protein S14 YPZ3_0189 IPR018271 Ribosomal protein S14, conserved site YPZ3_0190 IPR035987 Ribosomal protein S8 superfamily YPZ3_0190 IPR000630 Ribosomal protein S8 YPZ3_0191 IPR020040 Ribosomal protein L6, alpha-beta domain YPZ3_0191 IPR019906 Ribosomal protein L6, bacterial-type YPZ3_0191 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily YPZ3_0191 IPR002358 Ribosomal protein L6, conserved site YPZ3_0191 IPR000702 Ribosomal protein L6 YPZ3_0192 IPR004389 Ribosomal protein L18, bacterial-type YPZ3_0192 IPR005484 Ribosomal protein L18 YPZ3_0193 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPZ3_0193 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_0193 IPR018192 Ribosomal protein S5, N-terminal, conserved site YPZ3_0193 IPR013810 Ribosomal protein S5, N-terminal YPZ3_0193 IPR005712 Ribosomal protein S5, bacterial-type YPZ3_0193 IPR000851 Ribosomal protein S5 YPZ3_0193 IPR005324 Ribosomal protein S5, C-terminal YPZ3_0194 IPR021131 Ribosomal protein L18e/L15P YPZ3_0194 IPR030878 Ribosomal protein L15 YPZ3_0194 IPR001196 Ribosomal protein L15, conserved site YPZ3_0194 IPR005749 Ribosomal protein L15, bacterial-type YPZ3_0194 IPR036227 Ribosomal L18e/L15P superfamily YPZ3_0195 IPR023201 SecY domain superfamily YPZ3_0195 IPR030659 SecY conserved site YPZ3_0195 IPR002208 SecY/SEC61-alpha family YPZ3_0195 IPR026593 Protein translocase subunit SecY YPZ3_0196 IPR001892 Ribosomal protein S13 YPZ3_0196 IPR027437 30s ribosomal protein S13, C-terminal YPZ3_0196 IPR010979 Ribosomal protein S13-like, H2TH YPZ3_0196 IPR019980 Ribosomal protein S13, bacterial-type YPZ3_0196 IPR018269 Ribosomal protein S13, conserved site YPZ3_0197 IPR036967 Ribosomal protein S11 superfamily YPZ3_0197 IPR001971 Ribosomal protein S11 YPZ3_0197 IPR018102 Ribosomal S11, conserved site YPZ3_0197 IPR019981 Ribosomal protein S11, bacterial-type YPZ3_0198 IPR002942 RNA-binding S4 domain YPZ3_0198 IPR005709 Ribosomal protein S4, bacterial-type YPZ3_0198 IPR001912 Ribosomal protein S4/S9, N-terminal YPZ3_0198 IPR018079 Ribosomal protein S4, conserved site YPZ3_0198 IPR022801 Ribosomal protein S4/S9 YPZ3_0198 IPR036986 RNA-binding S4 domain superfamily YPZ3_0199 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type YPZ3_0199 IPR011262 DNA-directed RNA polymerase, insert domain YPZ3_0199 IPR011773 DNA-directed RNA polymerase, alpha subunit YPZ3_0199 IPR036603 RNA polymerase, RBP11-like subunit YPZ3_0199 IPR036643 DNA-directed RNA polymerase, insert domain superfamily YPZ3_0199 IPR011260 RNA polymerase, alpha subunit, C-terminal YPZ3_0200 IPR000456 Ribosomal protein L17 YPZ3_0200 IPR036373 Ribosomal protein L17 superfamily YPZ3_0201 IPR000551 MerR-type HTH domain YPZ3_0201 IPR009061 Putative DNA-binding domain superfamily YPZ3_0201 IPR011788 Zn(II)-responsive transcriptional regulator YPZ3_0202 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L YPZ3_0202 IPR001185 Large-conductance mechanosensitive channel YPZ3_0202 IPR019823 Large-conductance mechanosensitive channel, conserved site YPZ3_0202 IPR036019 Gated mechanosensitive channel YPZ3_0203 IPR006036 Potassium uptake protein TrkA YPZ3_0203 IPR006037 Regulator of K+ conductance, C-terminal YPZ3_0203 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YPZ3_0203 IPR036291 NAD(P)-binding domain superfamily YPZ3_0203 IPR003148 Regulator of K+ conductance, N-terminal YPZ3_0204 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_0204 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site YPZ3_0204 IPR004573 rRNA small subunit methyltransferase B YPZ3_0204 IPR023267 RNA (C5-cytosine) methyltransferase YPZ3_0204 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae YPZ3_0204 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type YPZ3_0204 IPR035926 NusB-like superfamily YPZ3_0204 IPR006027 NusB/RsmB/TIM44 YPZ3_0205 IPR001555 Phosphoribosylglycinamide formyltransferase, active site YPZ3_0205 IPR036477 Formyl transferase, N-terminal domain superfamily YPZ3_0205 IPR011034 Formyl transferase-like, C-terminal domain superfamily YPZ3_0205 IPR002376 Formyl transferase, N-terminal YPZ3_0205 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain YPZ3_0205 IPR005794 Methionyl-tRNA formyltransferase YPZ3_0205 IPR005793 Formyl transferase, C-terminal YPZ3_0205 IPR037022 Formyl transferase, C-terminal domain superfamily YPZ3_0206 IPR036821 Peptide deformylase superfamily YPZ3_0206 IPR023635 Peptide deformylase YPZ3_0207 IPR041614 DprA, winged helix domain YPZ3_0207 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0207 IPR003488 DNA recombination-mediator protein A YPZ3_0208 IPR007456 Smg YPZ3_0209 IPR000380 DNA topoisomerase, type IA YPZ3_0209 IPR013498 DNA topoisomerase, type IA, zn finger YPZ3_0210 IPR006070 YrdC-like domain YPZ3_0210 IPR023535 Threonylcarbamoyl-AMP synthase YPZ3_0210 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YPZ3_0211 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal YPZ3_0211 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YPZ3_0211 IPR022893 Shikimate dehydrogenase family YPZ3_0211 IPR011342 Shikimate dehydrogenase YPZ3_0211 IPR036291 NAD(P)-binding domain superfamily YPZ3_0211 IPR041121 SDH, C-terminal YPZ3_0212 IPR001451 Hexapeptide repeat YPZ3_0212 IPR011004 Trimeric LpxA-like superfamily YPZ3_0213 IPR001270 ClpA/B family YPZ3_0213 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0213 IPR002611 IstB-like ATP-binding protein YPZ3_0213 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_0213 IPR003593 AAA+ ATPase domain YPZ3_0214 IPR012337 Ribonuclease H-like superfamily YPZ3_0214 IPR036397 Ribonuclease H superfamily YPZ3_0214 IPR006120 Resolvase, HTH domain YPZ3_0214 IPR001584 Integrase, catalytic core YPZ3_0214 IPR017894 HTH domain, IS21 transposase-type YPZ3_0216 IPR014083 Cation/acetate symporter ActP YPZ3_0216 IPR038377 Sodium/glucose symporter superfamily YPZ3_0216 IPR001734 Sodium/solute symporter YPZ3_0216 IPR018212 Sodium/solute symporter, conserved site YPZ3_0217 IPR007436 Protein of unknown function DUF485 YPZ3_0218 IPR011904 Acetate-CoA ligase YPZ3_0218 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain YPZ3_0218 IPR025110 AMP-binding enzyme, C-terminal domain YPZ3_0218 IPR020845 AMP-binding, conserved site YPZ3_0218 IPR000873 AMP-dependent synthetase/ligase YPZ3_0218 IPR042099 AMP-dependent synthetase-like superfamily YPZ3_0219 IPR034703 Proton/glutamate-aspartate symporter GltP YPZ3_0219 IPR036458 Sodium:dicarboxylate symporter superfamily YPZ3_0219 IPR018107 Sodium:dicarboxylate symporter, conserved site YPZ3_0219 IPR001991 Sodium:dicarboxylate symporter YPZ3_0219 IPR033380 Glutamate-aspartate symport protein GltP/GltT YPZ3_0220 IPR011006 CheY-like superfamily YPZ3_0220 IPR000792 Transcription regulator LuxR, C-terminal YPZ3_0220 IPR001789 Signal transduction response regulator, receiver domain YPZ3_0220 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_0221 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPZ3_0221 IPR036641 HPT domain superfamily YPZ3_0221 IPR011006 CheY-like superfamily YPZ3_0221 IPR003660 HAMP domain YPZ3_0221 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_0221 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_0221 IPR005467 Histidine kinase domain YPZ3_0221 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_0221 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_0221 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_0221 IPR019247 Histidine kinase BarA, N-terminal YPZ3_0221 IPR001789 Signal transduction response regulator, receiver domain YPZ3_0224 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like YPZ3_0224 IPR018060 DNA binding HTH domain, AraC-type YPZ3_0224 IPR018062 HTH domain AraC-type, conserved site YPZ3_0224 IPR009057 Homeobox-like domain superfamily YPZ3_0225 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ YPZ3_0225 IPR006182 Secretory protein YscJ/FliF YPZ3_0228 IPR042193 FHIPEP, domain 3 YPZ3_0228 IPR006302 Type III secretion protein HrcV YPZ3_0228 IPR001712 Type III secretion system FHIPEP YPZ3_0228 IPR042196 FHIPEP, domain 4 YPZ3_0228 IPR025505 FHIPEP conserved site YPZ3_0229 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPZ3_0229 IPR005714 ATPase, type III secretion system, FliI/YscN YPZ3_0229 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0229 IPR003593 AAA+ ATPase domain YPZ3_0229 IPR013380 ATPase, type III secretion system, H+-transporting YPZ3_0229 IPR040627 T3SS EscN ATPase, C-terminal YPZ3_0232 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPZ3_0232 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO YPZ3_0232 IPR036429 SpoA-like superfamily YPZ3_0232 IPR001543 Surface presentation of antigen (SpoA) YPZ3_0233 IPR005773 Yop virulence translocation protein R YPZ3_0233 IPR005838 Type III secretion system inner membrane P protein YPZ3_0234 IPR002010 Type III secretion system inner membrane R protein YPZ3_0234 IPR006304 Type III secretion protein SpaR/YscT YPZ3_0235 IPR006307 Type III exporter system, secretion apparatus protein BsaZ YPZ3_0235 IPR006135 Type III secretion system substrate exporter YPZ3_0235 IPR029025 Type III secretion system substrate exporter, C-terminal YPZ3_0236 IPR007272 Sulphur transport domain YPZ3_0237 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0237 IPR005119 LysR, substrate-binding YPZ3_0237 IPR000847 Transcription regulator HTH, LysR YPZ3_0237 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0238 IPR018227 Amino acid/polyamine transporter 2 YPZ3_0239 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_0239 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_0239 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_0239 IPR006233 Cystathionine beta-lyase, bacterial YPZ3_0239 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPZ3_0240 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0240 IPR015863 ABC transporter, hemin import, HmuV YPZ3_0240 IPR017871 ABC transporter, conserved site YPZ3_0240 IPR003593 AAA+ ATPase domain YPZ3_0240 IPR003439 ABC transporter-like YPZ3_0241 IPR000522 ABC transporter, permease protein, BtuC-like YPZ3_0241 IPR037294 ABC transporter, BtuC-like YPZ3_0242 IPR002491 ABC transporter periplasmic binding domain YPZ3_0243 IPR007845 Haemin-degrading HemS/ChuX domain YPZ3_0244 IPR039426 Vitamin B12 transporter BtuB-like YPZ3_0244 IPR012910 TonB-dependent receptor, plug domain YPZ3_0244 IPR037066 TonB-dependent receptor, plug domain superfamily YPZ3_0244 IPR000531 TonB-dependent receptor-like, beta-barrel YPZ3_0244 IPR010916 TonB box, conserved site YPZ3_0244 IPR011276 TonB-dependent haem/haemoglobin receptor YPZ3_0244 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor YPZ3_0244 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPZ3_0245 IPR016040 NAD(P)-binding domain YPZ3_0245 IPR036291 NAD(P)-binding domain superfamily YPZ3_0246 IPR010413 Intracellular heme transport protein HutX-like YPZ3_0247 IPR007197 Radical SAM YPZ3_0247 IPR023404 Radical SAM, alpha/beta horseshoe YPZ3_0247 IPR026332 Anaerobilin synthase HutW YPZ3_0247 IPR034505 Anaerobic coproporphyrinogen-III oxidase YPZ3_0247 IPR006638 Elp3/MiaB/NifB YPZ3_0249 IPR011233 Tellurite/Phi/PacB toxicity protection, TerW YPZ3_0251 IPR011215 Phosphoribosyl transferase YPZ3_0251 IPR028157 PELOTA RNA-binding domain YPZ3_0255 IPR003325 TerD domain YPZ3_0256 IPR003325 TerD domain YPZ3_0256 IPR017115 Tellurite resistance, TerA YPZ3_0257 IPR029024 TerB-like YPZ3_0257 IPR007791 Co-chaperone DjlA, N-terminal YPZ3_0258 IPR022369 Integral membrane protein TerC, riboswitch-linked YPZ3_0258 IPR005496 Integral membrane protein TerC YPZ3_0259 IPR003325 TerD domain YPZ3_0260 IPR003325 TerD domain YPZ3_0262 IPR000015 Outer membrane usher protein YPZ3_0262 IPR037224 PapC, N-terminal domain superfamily YPZ3_0262 IPR042186 Outer membrane usher protein FimD, plug domain YPZ3_0262 IPR025949 PapC-like, C-terminal domain YPZ3_0262 IPR025885 PapC, N-terminal domain YPZ3_0263 IPR013783 Immunoglobulin-like fold YPZ3_0263 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPZ3_0263 IPR016147 Pili assembly chaperone, N-terminal YPZ3_0263 IPR008962 PapD-like superfamily YPZ3_0265 IPR006311 Twin-arginine translocation pathway, signal sequence YPZ3_0265 IPR012951 Berberine/berberine-like YPZ3_0265 IPR016166 FAD-binding domain, PCMH-type YPZ3_0265 IPR036318 FAD-binding, type PCMH-like superfamily YPZ3_0265 IPR006094 FAD linked oxidase, N-terminal YPZ3_0266 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPZ3_0266 IPR006315 Outer membrane autotransporter barrel YPZ3_0266 IPR036709 Autotransporter beta-domain superfamily YPZ3_0266 IPR011050 Pectin lyase fold/virulence factor YPZ3_0266 IPR005546 Autotransporter beta-domain YPZ3_0266 IPR013425 Autotransporter-associated beta strand repeat YPZ3_0267 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPZ3_0267 IPR007440 Chorismate--pyruvate lyase YPZ3_0268 IPR030470 UbiA prenyltransferase conserved site YPZ3_0268 IPR000537 UbiA prenyltransferase family YPZ3_0268 IPR039653 Prenyltransferase YPZ3_0268 IPR006370 4-hydroxybenzoate polyprenyltransferase-like YPZ3_0269 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase YPZ3_0269 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB YPZ3_0269 IPR002123 Phospholipid/glycerol acyltransferase YPZ3_0269 IPR041728 GPAT/DHAPAT, acyltransferase domain YPZ3_0270 IPR036945 Diacylglycerol kinase (DAGK) superfamily YPZ3_0270 IPR033718 Diacylglycerol kinase, prokaryotic YPZ3_0270 IPR000829 DAGK family YPZ3_0271 IPR039418 LexA-like YPZ3_0271 IPR006200 Transcription regulator LexA YPZ3_0271 IPR006197 Peptidase S24, LexA-like YPZ3_0271 IPR015927 Peptidase S24/S26A/S26B/S26C YPZ3_0271 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0271 IPR006199 LexA repressor, DNA-binding domain YPZ3_0271 IPR036286 LexA/Signal peptidase-like superfamily YPZ3_0271 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0272 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0272 IPR002481 Ferric-uptake regulator YPZ3_0272 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0273 IPR035587 DUS-like, FMN-binding domain YPZ3_0273 IPR001269 tRNA-dihydrouridine synthase YPZ3_0273 IPR013785 Aldolase-type TIM barrel YPZ3_0273 IPR004653 tRNA-dihydrouridine(20/20a) synthase YPZ3_0273 IPR018517 tRNA-dihydrouridine synthase, conserved site YPZ3_0274 IPR013149 Alcohol dehydrogenase, C-terminal YPZ3_0274 IPR011032 GroES-like superfamily YPZ3_0274 IPR013154 Alcohol dehydrogenase, N-terminal YPZ3_0274 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site YPZ3_0274 IPR036291 NAD(P)-binding domain superfamily YPZ3_0274 IPR020843 Polyketide synthase, enoylreductase domain YPZ3_0275 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YPZ3_0275 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0275 IPR007693 DNA helicase, DnaB-like, N-terminal YPZ3_0275 IPR007692 DNA helicase, DnaB type YPZ3_0275 IPR007694 DNA helicase, DnaB-like, C-terminal YPZ3_0275 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily YPZ3_0275 IPR003593 AAA+ ATPase domain YPZ3_0276 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site YPZ3_0276 IPR011079 Alanine racemase, C-terminal YPZ3_0276 IPR001608 Alanine racemase, N-terminal YPZ3_0276 IPR000821 Alanine racemase YPZ3_0276 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPZ3_0276 IPR029066 PLP-binding barrel YPZ3_0277 IPR000796 Aspartate/other aminotransferase YPZ3_0277 IPR004839 Aminotransferase, class I/classII YPZ3_0277 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YPZ3_0277 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_0277 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_0277 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_0278 IPR007351 Uncharacterised protein YjbR YPZ3_0278 IPR038056 YjbR-like superfamily YPZ3_0279 IPR041552 UvrA DNA-binding domain YPZ3_0279 IPR041102 UvrA, interaction domain YPZ3_0279 IPR017871 ABC transporter, conserved site YPZ3_0279 IPR003439 ABC transporter-like YPZ3_0279 IPR004602 UvrABC system subunit A YPZ3_0279 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0280 IPR012340 Nucleic acid-binding, OB-fold YPZ3_0280 IPR000424 Primosome PriB/single-strand DNA-binding YPZ3_0280 IPR011344 Single-stranded DNA-binding protein YPZ3_0281 IPR011008 Dimeric alpha-beta barrel YPZ3_0281 IPR013448 L-rhamnose mutarotase YPZ3_0281 IPR008000 Rhamnose/fucose mutarotase YPZ3_0282 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPZ3_0282 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YPZ3_0282 IPR039697 Iron-type alcohol dehydrogenase-like YPZ3_0283 IPR013447 Rhamnulose-1-phosphate aldolase YPZ3_0283 IPR001303 Class II aldolase/adducin N-terminal YPZ3_0283 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPZ3_0284 IPR009308 Rhamnose isomerase YPZ3_0284 IPR036237 Xylose isomerase-like superfamily YPZ3_0285 IPR013449 Rhamnulokinase YPZ3_0285 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPZ3_0285 IPR000577 Carbohydrate kinase, FGGY YPZ3_0285 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPZ3_0286 IPR023609 Transcription regulator HTH, RhaS YPZ3_0286 IPR020449 Transcription regulator HTH, AraC- type YPZ3_0286 IPR014710 RmlC-like jelly roll fold YPZ3_0286 IPR018060 DNA binding HTH domain, AraC-type YPZ3_0286 IPR037923 Transcription regulator HTH-like YPZ3_0286 IPR009057 Homeobox-like domain superfamily YPZ3_0286 IPR003313 AraC-type arabinose-binding/dimerisation domain YPZ3_0287 IPR014710 RmlC-like jelly roll fold YPZ3_0287 IPR018062 HTH domain AraC-type, conserved site YPZ3_0287 IPR018060 DNA binding HTH domain, AraC-type YPZ3_0287 IPR009057 Homeobox-like domain superfamily YPZ3_0287 IPR003313 AraC-type arabinose-binding/dimerisation domain YPZ3_0287 IPR011051 RmlC-like cupin domain superfamily YPZ3_0287 IPR020449 Transcription regulator HTH, AraC- type YPZ3_0287 IPR023699 Transcription activator HTH, RhaR YPZ3_0288 IPR004673 L-rhamnose-proton symport, RhaT YPZ3_0289 IPR008992 Enterotoxin YPZ3_0291 IPR025669 AAA domain YPZ3_0291 IPR005702 Exopolysaccharide synthesis protein YPZ3_0291 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0292 IPR007693 DNA helicase, DnaB-like, N-terminal YPZ3_0292 IPR003593 AAA+ ATPase domain YPZ3_0292 IPR007694 DNA helicase, DnaB-like, C-terminal YPZ3_0292 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0292 IPR007692 DNA helicase, DnaB type YPZ3_0292 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily YPZ3_0292 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YPZ3_0299 IPR023406 DNA topoisomerase, type IA, active site YPZ3_0299 IPR034144 DNA topoisomerase 3-like, TOPRIM domain YPZ3_0299 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YPZ3_0299 IPR023405 DNA topoisomerase, type IA, core domain YPZ3_0299 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YPZ3_0299 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YPZ3_0299 IPR003602 DNA topoisomerase, type IA, DNA-binding domain YPZ3_0299 IPR013497 DNA topoisomerase, type IA, central YPZ3_0299 IPR003601 DNA topoisomerase, type IA, domain 2 YPZ3_0299 IPR006171 TOPRIM domain YPZ3_0299 IPR005738 DNA topoisomerase III YPZ3_0299 IPR000380 DNA topoisomerase, type IA YPZ3_0301 IPR012340 Nucleic acid-binding, OB-fold YPZ3_0301 IPR000424 Primosome PriB/single-strand DNA-binding YPZ3_0301 IPR011344 Single-stranded DNA-binding protein YPZ3_0333 IPR013610 Domain of unknown function DUF1738 YPZ3_0333 IPR041459 Polyvalent protein, metallopeptidase domain YPZ3_0333 IPR034154 Archaeal primase DnaG/twinkle, TOPRIM domain YPZ3_0333 IPR006171 TOPRIM domain YPZ3_0336 IPR008878 Transposase IS66, Orf2 YPZ3_0337 IPR039552 Transposase IS66, C-terminal YPZ3_0337 IPR004291 Transposase, IS66 YPZ3_0337 IPR024474 Zinc-finger binding domain of transposase IS66 YPZ3_0337 IPR024463 Transposase TnpC, homeodomain YPZ3_0338 IPR002347 Short-chain dehydrogenase/reductase SDR YPZ3_0338 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPZ3_0338 IPR036291 NAD(P)-binding domain superfamily YPZ3_0340 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0340 IPR034739 UvrD/AddA helicase, N-terminal YPZ3_0340 IPR011604 Exonuclease, phage-type/RecB, C-terminal YPZ3_0340 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type YPZ3_0340 IPR014017 UvrD-like DNA helicase, C-terminal YPZ3_0340 IPR011335 Restriction endonuclease type II-like YPZ3_0340 IPR014016 UvrD-like helicase, ATP-binding domain YPZ3_0340 IPR014152 DNA helicase subunit AddA YPZ3_0340 IPR000212 DNA helicase, UvrD/REP type YPZ3_0342 IPR010998 Integrase/recombinase, N-terminal YPZ3_0342 IPR004107 Integrase, SAM-like, N-terminal YPZ3_0342 IPR002104 Integrase, catalytic domain YPZ3_0342 IPR013762 Integrase-like, catalytic domain superfamily YPZ3_0342 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPZ3_0343 IPR009057 Homeobox-like domain superfamily YPZ3_0343 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPZ3_0343 IPR001647 DNA-binding HTH domain, TetR-type YPZ3_0344 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_0344 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 YPZ3_0344 IPR028261 Dihydroprymidine dehydrogenase domain II YPZ3_0344 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPZ3_0344 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_0344 IPR009051 Alpha-helical ferredoxin YPZ3_0344 IPR023753 FAD/NAD(P)-binding domain YPZ3_0345 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_0345 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPZ3_0346 IPR041925 Formate dehydrogenase H, molybdopterin-binding domain YPZ3_0346 IPR041924 Formate dehydrogenase H, N-terminal YPZ3_0346 IPR006656 Molybdopterin oxidoreductase YPZ3_0346 IPR009010 Aspartate decarboxylase-like domain superfamily YPZ3_0346 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPZ3_0346 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPZ3_0346 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPZ3_0346 IPR006657 Molybdopterin dinucleotide-binding domain YPZ3_0346 IPR006478 Formate dehydrogenase, alpha subunit YPZ3_0347 IPR036249 Thioredoxin-like superfamily YPZ3_0347 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily YPZ3_0347 IPR017937 Thioredoxin, conserved site YPZ3_0347 IPR035671 DsbD gamma YPZ3_0347 IPR003834 Cytochrome C biogenesis protein, transmembrane domain YPZ3_0347 IPR022910 Thiol:disulphide interchange protein DsbD YPZ3_0347 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain YPZ3_0347 IPR013766 Thioredoxin domain YPZ3_0348 IPR023700 Divalent cation tolerance protein CutA, Enterobacteria YPZ3_0348 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPZ3_0348 IPR004323 Divalent ion tolerance protein, CutA YPZ3_0348 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPZ3_0349 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPZ3_0350 IPR004708 Aspartate ammonia-lyase YPZ3_0350 IPR000362 Fumarate lyase family YPZ3_0350 IPR022761 Fumarate lyase, N-terminal YPZ3_0350 IPR008948 L-Aspartase-like YPZ3_0350 IPR020557 Fumarate lyase, conserved site YPZ3_0350 IPR024083 Fumarase/histidase, N-terminal YPZ3_0350 IPR018951 Fumarase C, C-terminal YPZ3_0351 IPR007313 FxsA cytoplasmic membrane protein YPZ3_0352 IPR002423 Chaperonin Cpn60/TCP-1 family YPZ3_0352 IPR027409 GroEL-like apical domain superfamily YPZ3_0352 IPR027413 GroEL-like equatorial domain superfamily YPZ3_0352 IPR027410 TCP-1-like chaperonin intermediate domain superfamily YPZ3_0352 IPR001844 Chaperonin Cpn60 YPZ3_0352 IPR018370 Chaperonin Cpn60, conserved site YPZ3_0353 IPR025294 Protein of unknown function DUF4156 YPZ3_0354 IPR013785 Aldolase-type TIM barrel YPZ3_0354 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase YPZ3_0354 IPR022462 Lysine-2,3-aminomutase-like YPZ3_0354 IPR007197 Radical SAM YPZ3_0355 IPR008991 Translation protein SH3-like domain superfamily YPZ3_0355 IPR011768 Translation elongation factor P YPZ3_0355 IPR013852 Translation elongation factor P/YeiP, conserved site YPZ3_0355 IPR001059 Translation elongation factor P/YeiP, central YPZ3_0355 IPR013185 Translation elongation factor, KOW-like YPZ3_0355 IPR020599 Translation elongation factor P/YeiP YPZ3_0355 IPR012340 Nucleic acid-binding, OB-fold YPZ3_0355 IPR014722 Ribosomal protein L2, domain 2 YPZ3_0355 IPR015365 Elongation factor P, C-terminal YPZ3_0356 IPR000390 Small multidrug resistance protein family YPZ3_0357 IPR003418 Fumarate reductase, subunit D YPZ3_0357 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YPZ3_0358 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YPZ3_0358 IPR003510 Fumarate reductase, subunit C YPZ3_0359 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPZ3_0359 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein YPZ3_0359 IPR009051 Alpha-helical ferredoxin YPZ3_0359 IPR012675 Beta-grasp domain superfamily YPZ3_0359 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPZ3_0359 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_0359 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPZ3_0359 IPR036010 2Fe-2S ferredoxin-like superfamily YPZ3_0359 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal YPZ3_0360 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YPZ3_0360 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily YPZ3_0360 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YPZ3_0360 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site YPZ3_0360 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_0360 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily YPZ3_0360 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPZ3_0360 IPR005884 Fumarate reductase, flavoprotein subunit YPZ3_0361 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPZ3_0361 IPR006195 Aminoacyl-tRNA synthetase, class II YPZ3_0361 IPR004525 Elongation factor P--(R)-beta-lysine ligase YPZ3_0361 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal YPZ3_0362 IPR024393 Mechanosensitive ion channel MscS, porin domain YPZ3_0362 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YPZ3_0362 IPR023408 Mechanosensitive ion channel MscS domain superfamily YPZ3_0362 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPZ3_0362 IPR006686 Mechanosensitive ion channel MscS, conserved site YPZ3_0362 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPZ3_0362 IPR006685 Mechanosensitive ion channel MscS YPZ3_0362 IPR010920 LSM domain superfamily YPZ3_0363 IPR033177 Phosphatidylserine decarboxylase YPZ3_0363 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 YPZ3_0363 IPR003817 Phosphatidylserine decarboxylase-related YPZ3_0364 IPR010914 RsgA GTPase domain YPZ3_0364 IPR004881 Ribosome biogenesis GTPase RsgA YPZ3_0364 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0364 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain YPZ3_0365 IPR022894 Oligoribonuclease YPZ3_0365 IPR013520 Exonuclease, RNase T/DNA polymerase III YPZ3_0365 IPR036397 Ribonuclease H superfamily YPZ3_0365 IPR012337 Ribonuclease H-like superfamily YPZ3_0366 IPR013542 Domain of unknown function DUF1730 YPZ3_0366 IPR009051 Alpha-helical ferredoxin YPZ3_0366 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_0366 IPR004453 Epoxyqueuosine reductase QueG YPZ3_0366 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPZ3_0367 IPR017953 Carbohydrate kinase, predicted, conserved site YPZ3_0367 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase YPZ3_0367 IPR029056 Ribokinase-like YPZ3_0367 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr YPZ3_0367 IPR036652 YjeF N-terminal domain superfamily YPZ3_0367 IPR004443 YjeF N-terminal domain YPZ3_0368 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0368 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE YPZ3_0369 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain YPZ3_0370 IPR020667 DNA mismatch repair protein, MutL YPZ3_0370 IPR002099 DNA mismatch repair protein family, N-terminal YPZ3_0370 IPR013507 DNA mismatch repair protein, S5 domain 2-like YPZ3_0370 IPR014762 DNA mismatch repair, conserved site YPZ3_0370 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms YPZ3_0370 IPR042121 MutL, C-terminal domain, regulatory subdomain YPZ3_0370 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_0370 IPR042120 MutL, C-terminal domain, dimerisation subdomain YPZ3_0370 IPR014790 MutL, C-terminal, dimerisation YPZ3_0370 IPR037198 MutL, C-terminal domain superfamily YPZ3_0370 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_0370 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPZ3_0371 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0371 IPR018022 IPP transferase YPZ3_0371 IPR039657 Dimethylallyltransferase YPZ3_0372 IPR010920 LSM domain superfamily YPZ3_0372 IPR005001 RNA-binding protein Hfq YPZ3_0373 IPR035647 EF-G domain III/V-like YPZ3_0373 IPR030394 HflX-type guanine nucleotide-binding (G) domain YPZ3_0373 IPR032305 GTP-binding protein, middle domain YPZ3_0373 IPR025121 GTPase HflX, N-terminal YPZ3_0373 IPR042108 GTPase HflX, N-terminal domain superfamily YPZ3_0373 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0373 IPR006073 GTP binding domain YPZ3_0373 IPR016496 GTPase HflX YPZ3_0374 IPR010201 HflK YPZ3_0374 IPR020980 Menbrane protein HflK, N-terminal YPZ3_0374 IPR001972 Stomatin family YPZ3_0374 IPR001107 Band 7 domain YPZ3_0374 IPR036013 Band 7/SPFH domain superfamily YPZ3_0375 IPR036013 Band 7/SPFH domain superfamily YPZ3_0375 IPR010200 HflC YPZ3_0375 IPR001107 Band 7 domain YPZ3_0376 IPR042110 Adenylosuccinate synthetase, domain 2 YPZ3_0376 IPR042109 Adenylosuccinate synthetase, domain 1 YPZ3_0376 IPR042111 Adenylosuccinate synthetase, domain 3 YPZ3_0376 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0376 IPR018220 Adenylosuccinate synthase, GTP-binding site YPZ3_0376 IPR033128 Adenylosuccinate synthase, active site YPZ3_0376 IPR001114 Adenylosuccinate synthetase YPZ3_0377 IPR030489 Transcription regulator Rrf2-type, conserved site YPZ3_0377 IPR000944 Transcription regulator Rrf2-type YPZ3_0377 IPR023761 Transcriptional repressor HTH, NsrR YPZ3_0377 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0377 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0378 IPR013668 Ribonuclease R winged-helix domain YPZ3_0378 IPR013223 Ribonuclease B, N-terminal OB domain YPZ3_0378 IPR001900 Ribonuclease II/R YPZ3_0378 IPR022966 Ribonuclease II/R, conserved site YPZ3_0378 IPR011129 Cold shock domain YPZ3_0378 IPR003029 S1 domain YPZ3_0378 IPR022967 RNA-binding domain, S1 YPZ3_0378 IPR004476 Ribonuclease II/ribonuclease R YPZ3_0378 IPR012340 Nucleic acid-binding, OB-fold YPZ3_0378 IPR011805 Ribonuclease R YPZ3_0378 IPR040476 RNase II/RNase R, cold shock domain YPZ3_0379 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB YPZ3_0379 IPR004441 RNA methyltransferase TrmH family YPZ3_0379 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPZ3_0379 IPR029064 50S ribosomal protein L30e-like YPZ3_0379 IPR013123 RNA 2-O ribose methyltransferase, substrate binding YPZ3_0379 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPZ3_0379 IPR029028 Alpha/beta knot methyltransferases YPZ3_0380 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal YPZ3_0380 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain YPZ3_0380 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal YPZ3_0380 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily YPZ3_0380 IPR034184 Putative acyl-CoA dehydrogenase AidB YPZ3_0380 IPR041504 Adaptive response protein AidB, N-terminal YPZ3_0380 IPR006089 Acyl-CoA dehydrogenase, conserved site YPZ3_0381 IPR025543 Dodecin-like YPZ3_0381 IPR010854 Domain of unknown function DUF1471 YPZ3_0381 IPR036275 YdgH-like superfamily YPZ3_0382 IPR001270 ClpA/B family YPZ3_0382 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0382 IPR003593 AAA+ ATPase domain YPZ3_0382 IPR002611 IstB-like ATP-binding protein YPZ3_0382 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_0383 IPR017894 HTH domain, IS21 transposase-type YPZ3_0383 IPR001584 Integrase, catalytic core YPZ3_0383 IPR036397 Ribonuclease H superfamily YPZ3_0383 IPR012337 Ribonuclease H-like superfamily YPZ3_0383 IPR006120 Resolvase, HTH domain YPZ3_0384 IPR003593 AAA+ ATPase domain YPZ3_0384 IPR011704 ATPase, dynein-related, AAA domain YPZ3_0384 IPR021961 Protein of unknown function DUF3578 YPZ3_0384 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0386 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site YPZ3_0386 IPR002941 DNA methylase N-4/N-6 YPZ3_0386 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_0392 IPR010295 Protein of unknown function DUF898 YPZ3_0394 IPR018062 HTH domain AraC-type, conserved site YPZ3_0394 IPR018060 DNA binding HTH domain, AraC-type YPZ3_0394 IPR009057 Homeobox-like domain superfamily YPZ3_0394 IPR020449 Transcription regulator HTH, AraC- type YPZ3_0395 IPR013011 Phosphotransferase system, EIIB component, type 2 YPZ3_0395 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPZ3_0395 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPZ3_0395 IPR036095 PTS system IIB component-like superfamily YPZ3_0396 IPR036095 PTS system IIB component-like superfamily YPZ3_0396 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPZ3_0396 IPR013011 Phosphotransferase system, EIIB component, type 2 YPZ3_0396 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPZ3_0397 IPR006327 Phosphotransferase system, fructose IIC component YPZ3_0397 IPR013014 Phosphotransferase system, EIIC component, type 2 YPZ3_0398 IPR008731 Phosphotransferase system, enzyme I N-terminal YPZ3_0398 IPR036618 PtsI, HPr-binding domain superfamily YPZ3_0398 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPZ3_0398 IPR040442 Pyruvate kinase-like domain superfamily YPZ3_0398 IPR000032 Phosphocarrier protein HPr-like YPZ3_0398 IPR006318 Phosphotransferase system, enzyme I-like YPZ3_0398 IPR008279 PEP-utilising enzyme, mobile domain YPZ3_0398 IPR002178 PTS EIIA type-2 domain YPZ3_0398 IPR018274 PEP-utilising enzyme, active site YPZ3_0398 IPR000121 PEP-utilising enzyme, C-terminal YPZ3_0398 IPR023151 PEP-utilising enzyme, conserved site YPZ3_0398 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPZ3_0398 IPR035895 HPr-like superfamily YPZ3_0398 IPR036637 Phosphohistidine domain superfamily YPZ3_0398 IPR016152 Phosphotransferase/anion transporter YPZ3_0399 IPR019637 Protein of unknown function DUF2501 YPZ3_0400 IPR002915 DeoC/FbaB/ lacD aldolase YPZ3_0400 IPR033673 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase YPZ3_0400 IPR041720 Aldolase FbaB-like, archaeal-type YPZ3_0400 IPR013785 Aldolase-type TIM barrel YPZ3_0401 IPR025997 Periplasmic binding protein YPZ3_0401 IPR028082 Periplasmic binding protein-like I YPZ3_0401 IPR030159 Autoinducer 2 ABC transporter, substrate-binding protein LsrB YPZ3_0402 IPR001851 ABC transporter, permease YPZ3_0403 IPR001851 ABC transporter, permease YPZ3_0404 IPR017871 ABC transporter, conserved site YPZ3_0404 IPR030281 Autoinducer 2 import ATP-binding protein LsrA YPZ3_0404 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0404 IPR003593 AAA+ ATPase domain YPZ3_0404 IPR003439 ABC transporter-like YPZ3_0406 IPR012318 Crp-type HTH domain YPZ3_0406 IPR037171 NagB/RpiA transferase-like YPZ3_0406 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0406 IPR007324 Sugar-binding domain, putative YPZ3_0407 IPR033676 Autoinducer-2 kinase YPZ3_0407 IPR000577 Carbohydrate kinase, FGGY YPZ3_0407 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPZ3_0407 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPZ3_0408 IPR002201 Glycosyl transferase, family 9 YPZ3_0408 IPR011916 Lipopolysaccharide heptosyltransferase III, putative YPZ3_0410 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPZ3_0410 IPR006143 RND efflux pump, membrane fusion protein YPZ3_0411 IPR001036 Acriflavin resistance protein YPZ3_0411 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPZ3_0412 IPR012334 Pectin lyase fold YPZ3_0412 IPR011050 Pectin lyase fold/virulence factor YPZ3_0412 IPR000070 Pectinesterase, catalytic YPZ3_0412 IPR033131 Pectinesterase, Asp active site YPZ3_0413 IPR000160 GGDEF domain YPZ3_0413 IPR039435 Diguanylate cyclase DosC, globin sensor domain YPZ3_0413 IPR029787 Nucleotide cyclase YPZ3_0413 IPR012292 Globin/Protoglobin YPZ3_0413 IPR009050 Globin-like superfamily YPZ3_0414 IPR009885 Protein of unknown function DUF1435 YPZ3_0415 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_0415 IPR007848 Methyltransferase small domain YPZ3_0415 IPR013675 Methyltransferase small, N-terminal YPZ3_0415 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPZ3_0415 IPR023543 rRNA small subunit methyltransferase C YPZ3_0416 IPR004615 DNA polymerase III, psi subunit YPZ3_0416 IPR036654 DNA polymerase III, psi subunit superfamily YPZ3_0416 IPR018382 DNA polymerase III, psi subunit, subgroup YPZ3_0417 IPR000182 GNAT domain YPZ3_0417 IPR016181 Acyl-CoA N-acyltransferase YPZ3_0417 IPR006464 N-acetyltransferase RimI/Ard1 YPZ3_0418 IPR032090 Peptide chain release factor 3, C-terminal YPZ3_0418 IPR004548 Peptide chain release factor 3 YPZ3_0418 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0418 IPR041732 Peptide chain release factor 3, GTP-binding domain YPZ3_0418 IPR005225 Small GTP-binding protein domain YPZ3_0418 IPR000795 Transcription factor, GTP-binding domain YPZ3_0418 IPR031157 Tr-type G domain, conserved site YPZ3_0418 IPR004161 Translation elongation factor EFTu-like, domain 2 YPZ3_0418 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily YPZ3_0418 IPR009000 Translation protein, beta-barrel domain superfamily YPZ3_0418 IPR035647 EF-G domain III/V-like YPZ3_0419 IPR007055 BON domain YPZ3_0419 IPR014004 Transport-associated and nodulation domain, bacteria YPZ3_0420 IPR037483 YjjU-like YPZ3_0420 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPZ3_0420 IPR002641 Patatin-like phospholipase domain YPZ3_0421 IPR001130 TatD family YPZ3_0421 IPR032466 Metal-dependent hydrolase YPZ3_0421 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPZ3_0422 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain YPZ3_0422 IPR008276 Concentrative nucleoside transporter YPZ3_0422 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial YPZ3_0422 IPR011657 Concentrative nucleoside transporter C-terminal domain YPZ3_0422 IPR002668 Concentrative nucleoside transporter N-terminal domain YPZ3_0423 IPR002915 DeoC/FbaB/ lacD aldolase YPZ3_0423 IPR023649 Deoxyribose-phosphate aldolase type II YPZ3_0423 IPR013785 Aldolase-type TIM barrel YPZ3_0423 IPR011343 Deoxyribose-phosphate aldolase YPZ3_0424 IPR017459 Glycosyl transferase family 3, N-terminal domain YPZ3_0424 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily YPZ3_0424 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily YPZ3_0424 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily YPZ3_0424 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal YPZ3_0424 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic YPZ3_0424 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site YPZ3_0424 IPR000312 Glycosyl transferase, family 3 YPZ3_0424 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase YPZ3_0424 IPR013465 Thymidine phosphorylase YPZ3_0425 IPR013465 Thymidine phosphorylase YPZ3_0425 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase YPZ3_0425 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site YPZ3_0425 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic YPZ3_0425 IPR017459 Glycosyl transferase family 3, N-terminal domain YPZ3_0425 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily YPZ3_0425 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily YPZ3_0425 IPR000312 Glycosyl transferase, family 3 YPZ3_0425 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily YPZ3_0425 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal YPZ3_0426 IPR010045 Phosphopentomutase YPZ3_0426 IPR024052 Phosphopentomutase DeoB cap domain superfamily YPZ3_0426 IPR006124 Metalloenzyme YPZ3_0426 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPZ3_0427 IPR004402 Purine nucleoside phosphorylase DeoD-type YPZ3_0427 IPR018016 Nucleoside phosphorylase, conserved site YPZ3_0427 IPR000845 Nucleoside phosphorylase domain YPZ3_0427 IPR035994 Nucleoside phosphorylase superfamily YPZ3_0428 IPR019305 Uncharacterised protein family Smp YPZ3_0429 IPR041449 Phosphoserine phosphatase, N-terminal YPZ3_0429 IPR023190 Phosphoserine phosphatase, domain 2 YPZ3_0429 IPR023214 HAD superfamily YPZ3_0429 IPR036412 HAD-like superfamily YPZ3_0430 IPR041166 LapB, rubredoxin metal binding domain YPZ3_0430 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPZ3_0430 IPR004504 DNA repair protein RadA YPZ3_0430 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain YPZ3_0430 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0430 IPR003593 AAA+ ATPase domain YPZ3_0430 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_0431 IPR004821 Cytidyltransferase-like domain YPZ3_0431 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_0431 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0431 IPR001387 Cro/C1-type helix-turn-helix domain YPZ3_0431 IPR016429 NAD biosynthesis/regulator protein NadR YPZ3_0431 IPR041749 NadR, nicotinamide/nicotinate mononucleotide adenylyltransferase domain YPZ3_0431 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_0431 IPR038727 NadR/Ttd14, AAA domain YPZ3_0431 IPR006417 Nicotinamide-nucleotide adenylyltransferase YPZ3_0433 IPR032781 ABC-transporter extension domain YPZ3_0433 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0433 IPR022374 Energy-dependent translational throttle protein EttA YPZ3_0433 IPR017871 ABC transporter, conserved site YPZ3_0433 IPR003439 ABC transporter-like YPZ3_0433 IPR003593 AAA+ ATPase domain YPZ3_0434 IPR022374 Energy-dependent translational throttle protein EttA YPZ3_0434 IPR017871 ABC transporter, conserved site YPZ3_0434 IPR003439 ABC transporter-like YPZ3_0434 IPR032781 ABC-transporter extension domain YPZ3_0434 IPR003593 AAA+ ATPase domain YPZ3_0434 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0435 IPR006665 OmpA-like domain YPZ3_0435 IPR006664 Outer membrane protein, bacterial YPZ3_0435 IPR036737 OmpA-like domain superfamily YPZ3_0436 IPR000160 GGDEF domain YPZ3_0436 IPR003660 HAMP domain YPZ3_0436 IPR033417 Periplasmic sensor domain CHASE8 YPZ3_0436 IPR029787 Nucleotide cyclase YPZ3_0438 IPR023298 P-type ATPase, transmembrane domain superfamily YPZ3_0438 IPR008250 P-type ATPase, A domain superfamily YPZ3_0438 IPR006068 Cation-transporting P-type ATPase, C-terminal YPZ3_0438 IPR004014 Cation-transporting P-type ATPase, N-terminal YPZ3_0438 IPR023299 P-type ATPase, cytoplasmic domain N YPZ3_0438 IPR018303 P-type ATPase, phosphorylation site YPZ3_0438 IPR023214 HAD superfamily YPZ3_0438 IPR001757 P-type ATPase YPZ3_0438 IPR036412 HAD-like superfamily YPZ3_0439 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily YPZ3_0439 IPR012289 Lytic transglycosylase, superhelical linker YPZ3_0439 IPR008939 Lytic transglycosylase, superhelical U-shaped YPZ3_0439 IPR008258 Transglycosylase SLT domain 1 YPZ3_0439 IPR000189 Prokaryotic transglycosylase, active site YPZ3_0439 IPR023346 Lysozyme-like domain superfamily YPZ3_0440 IPR010921 Trp repressor/replication initiator YPZ3_0440 IPR038116 TrpR-like superfamily YPZ3_0440 IPR013335 Trp repressor, bacterial YPZ3_0440 IPR000831 Trp repressor YPZ3_0441 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 YPZ3_0441 IPR029001 Inosine triphosphate pyrophosphatase-like YPZ3_0441 IPR002786 Inosine/xanthosine triphosphatase YPZ3_0442 IPR023086 Phosphoglycerate mutase, GpmB, probable YPZ3_0442 IPR029033 Histidine phosphatase superfamily YPZ3_0442 IPR013078 Histidine phosphatase superfamily, clade-1 YPZ3_0442 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site YPZ3_0443 IPR009057 Homeobox-like domain superfamily YPZ3_0443 IPR029442 GyrI-like small molecule binding domain YPZ3_0443 IPR020449 Transcription regulator HTH, AraC- type YPZ3_0443 IPR011256 Regulatory factor, effector binding domain superfamily YPZ3_0443 IPR018060 DNA binding HTH domain, AraC-type YPZ3_0443 IPR010499 Bacterial transcription activator, effector binding YPZ3_0443 IPR018062 HTH domain AraC-type, conserved site YPZ3_0444 IPR010292 Uncharacterised protein family CreA YPZ3_0445 IPR011006 CheY-like superfamily YPZ3_0445 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0445 IPR001867 OmpR/PhoB-type DNA-binding domain YPZ3_0445 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_0445 IPR001789 Signal transduction response regulator, receiver domain YPZ3_0445 IPR039420 Transcriptional regulatory protein WalR-like YPZ3_0446 IPR018042 Aspartate kinase, conserved site YPZ3_0446 IPR027795 CASTOR, ACT domain YPZ3_0446 IPR001341 Aspartate kinase YPZ3_0446 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding YPZ3_0446 IPR001342 Homoserine dehydrogenase, catalytic YPZ3_0446 IPR019811 Homoserine dehydrogenase, conserved site YPZ3_0446 IPR001048 Aspartate/glutamate/uridylate kinase YPZ3_0446 IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain YPZ3_0446 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I YPZ3_0446 IPR036291 NAD(P)-binding domain superfamily YPZ3_0446 IPR036393 Acetylglutamate kinase-like superfamily YPZ3_0446 IPR002912 ACT domain YPZ3_0447 IPR000870 Homoserine kinase YPZ3_0447 IPR013750 GHMP kinase, C-terminal domain YPZ3_0447 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_0447 IPR006204 GHMP kinase N-terminal domain YPZ3_0447 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPZ3_0447 IPR036554 GHMP kinase, C-terminal domain superfamily YPZ3_0447 IPR006203 GHMP kinase, ATP-binding, conserved site YPZ3_0448 IPR029144 Threonine synthase, N-terminal YPZ3_0448 IPR037158 Threonine synthase, N-terminal domain superfamily YPZ3_0448 IPR001926 Pyridoxal-phosphate dependent enzyme YPZ3_0448 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPZ3_0448 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPZ3_0448 IPR004450 Threonine synthase-like YPZ3_0449 IPR005583 Peroxide stress protein YaaA YPZ3_0450 IPR018225 Transaldolase, active site YPZ3_0450 IPR004730 Transaldolase type 1 YPZ3_0450 IPR001585 Transaldolase/Fructose-6-phosphate aldolase YPZ3_0450 IPR013785 Aldolase-type TIM barrel YPZ3_0451 IPR001453 MoaB/Mog domain YPZ3_0451 IPR008284 Molybdenum cofactor biosynthesis, conserved site YPZ3_0451 IPR036425 MoaB/Mog-like domain superfamily YPZ3_0452 IPR020846 Major facilitator superfamily domain YPZ3_0452 IPR011701 Major facilitator superfamily YPZ3_0452 IPR005829 Sugar transporter, conserved site YPZ3_0452 IPR036259 MFS transporter superfamily YPZ3_0454 IPR000791 Acetate transporter GPR1/FUN34/SatP family YPZ3_0455 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily YPZ3_0455 IPR018181 Heat shock protein 70, conserved site YPZ3_0455 IPR012725 Chaperone DnaK YPZ3_0455 IPR013126 Heat shock protein 70 family YPZ3_0455 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily YPZ3_0456 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily YPZ3_0456 IPR001623 DnaJ domain YPZ3_0456 IPR012724 Chaperone DnaJ YPZ3_0456 IPR001305 Heat shock protein DnaJ, cysteine-rich domain YPZ3_0456 IPR036869 Chaperone J-domain superfamily YPZ3_0456 IPR018253 DnaJ domain, conserved site YPZ3_0456 IPR008971 HSP40/DnaJ peptide-binding YPZ3_0456 IPR002939 Chaperone DnaJ, C-terminal YPZ3_0457 IPR023171 Na/H antiporter domain superfamily YPZ3_0457 IPR004670 Na+/H+ antiporter NhaA YPZ3_0458 IPR000847 Transcription regulator HTH, LysR YPZ3_0458 IPR005119 LysR, substrate-binding YPZ3_0458 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0458 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0459 IPR015864 FAD synthetase YPZ3_0459 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_0459 IPR023465 Riboflavin kinase domain superfamily YPZ3_0459 IPR002606 Riboflavin kinase, bacterial YPZ3_0459 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic YPZ3_0459 IPR023468 Riboflavin kinase YPZ3_0460 IPR002606 Riboflavin kinase, bacterial YPZ3_0460 IPR023468 Riboflavin kinase YPZ3_0460 IPR023465 Riboflavin kinase domain superfamily YPZ3_0460 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_0460 IPR015864 FAD synthetase YPZ3_0460 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic YPZ3_0461 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPZ3_0461 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPZ3_0461 IPR023585 Isoleucine-tRNA ligase, type 1 YPZ3_0461 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain YPZ3_0461 IPR002301 Isoleucine-tRNA ligase YPZ3_0461 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPZ3_0461 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPZ3_0461 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPZ3_0461 IPR010663 Zinc finger, FPG/IleRS-type YPZ3_0461 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_0462 IPR001872 Peptidase A8, signal peptidase II YPZ3_0463 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPZ3_0464 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YPZ3_0465 IPR036515 Transposase IS200-like superfamily YPZ3_0465 IPR002686 Transposase IS200-like YPZ3_0466 IPR023940 Dihydrodipicolinate reductase YPZ3_0466 IPR036291 NAD(P)-binding domain superfamily YPZ3_0466 IPR022663 Dihydrodipicolinate reductase, C-terminal YPZ3_0466 IPR022664 Dihydrodipicolinate reductase, conserved site YPZ3_0466 IPR000846 Dihydrodipicolinate reductase, N-terminal YPZ3_0467 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily YPZ3_0467 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain YPZ3_0467 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain YPZ3_0467 IPR006274 Carbamoyl-phosphate synthase, small subunit YPZ3_0467 IPR017926 Glutamine amidotransferase YPZ3_0467 IPR029062 Class I glutamine amidotransferase-like YPZ3_0468 IPR016185 Pre-ATP-grasp domain superfamily YPZ3_0468 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain YPZ3_0468 IPR011607 Methylglyoxal synthase-like domain YPZ3_0468 IPR036914 Methylglyoxal synthase-like domain superfamily YPZ3_0468 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily YPZ3_0468 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain YPZ3_0468 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain YPZ3_0468 IPR011761 ATP-grasp fold YPZ3_0468 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain YPZ3_0468 IPR006275 Carbamoyl-phosphate synthase, large subunit YPZ3_0469 IPR004778 Homoserine/Threonine efflux protein YPZ3_0469 IPR001123 Amino acid exporter protein, LeuE-type YPZ3_0470 IPR010619 Putative threonine/serine exporter YPZ3_0471 IPR024528 Threonine/Serine exporter, ThrE YPZ3_0471 IPR020914 Uncharacterised protein family UPF0442 YPZ3_0472 IPR001796 Dihydrofolate reductase domain YPZ3_0472 IPR017925 Dihydrofolate reductase conserved site YPZ3_0472 IPR024072 Dihydrofolate reductase-like domain superfamily YPZ3_0472 IPR012259 Dihydrofolate reductase YPZ3_0475 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YPZ3_0475 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPZ3_0475 IPR029052 Metallo-dependent phosphatase-like YPZ3_0476 IPR023065 Uncharacterised protein family ApaG YPZ3_0476 IPR036767 ApaG domain superfamily YPZ3_0476 IPR007474 ApaG domain YPZ3_0477 IPR023165 rRNA adenine dimethylase-like YPZ3_0477 IPR011530 Ribosomal RNA adenine dimethylase YPZ3_0477 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site YPZ3_0477 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal YPZ3_0477 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_0477 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm YPZ3_0478 IPR005255 PdxA family YPZ3_0478 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase YPZ3_0479 IPR023034 Peptidyl-prolyl isomerase SurA YPZ3_0479 IPR015391 SurA N-terminal YPZ3_0479 IPR027304 Trigger factor/SurA domain superfamily YPZ3_0479 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YPZ3_0480 IPR005653 Organic solvent tolerance-like, N-terminal YPZ3_0480 IPR007543 LptD, C-terminal YPZ3_0480 IPR020889 LPS-assembly protein LptD YPZ3_0481 IPR001623 DnaJ domain YPZ3_0481 IPR023749 Co-chaperone DjlA YPZ3_0481 IPR029024 TerB-like YPZ3_0481 IPR036869 Chaperone J-domain superfamily YPZ3_0481 IPR007791 Co-chaperone DjlA, N-terminal YPZ3_0482 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPZ3_0482 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPZ3_0482 IPR006145 Pseudouridine synthase, RsuA/RluA YPZ3_0491 IPR019489 Clp ATPase, C-terminal YPZ3_0491 IPR036628 Clp, N-terminal domain superfamily YPZ3_0491 IPR018368 ClpA/B, conserved site 1 YPZ3_0491 IPR003959 ATPase, AAA-type, core YPZ3_0491 IPR003593 AAA+ ATPase domain YPZ3_0491 IPR004176 Clp, N-terminal YPZ3_0491 IPR001270 ClpA/B family YPZ3_0491 IPR041546 ClpA/ClpB, AAA lid domain YPZ3_0491 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0491 IPR017729 Type VI secretion system, ATPase ClpV1 YPZ3_0492 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPZ3_0492 IPR006531 Gp5 N-terminal YPZ3_0492 IPR037026 Vgr protein, OB-fold domain superfamily YPZ3_0492 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPZ3_0499 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPZ3_0499 IPR006664 Outer membrane protein, bacterial YPZ3_0499 IPR008722 Outer membrane porin F, N-terminal YPZ3_0499 IPR036737 OmpA-like domain superfamily YPZ3_0499 IPR006690 Outer membrane protein, OmpA-like, conserved site YPZ3_0499 IPR006665 OmpA-like domain YPZ3_0502 IPR022737 RNA polymerase recycling, bacterial, C-terminal YPZ3_0502 IPR023949 RNA polymerase-associated protein RapA YPZ3_0502 IPR001650 Helicase, C-terminal YPZ3_0502 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_0502 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0502 IPR040765 RapA, N-terminal Tudor like domain 1 YPZ3_0502 IPR040766 RapA, N-terminal Tudor-like domain 2 YPZ3_0502 IPR038718 SNF2-like, N-terminal domain superfamily YPZ3_0502 IPR000330 SNF2-related, N-terminal domain YPZ3_0503 IPR036397 Ribonuclease H superfamily YPZ3_0503 IPR042087 DNA polymerase family B, C-terminal domain YPZ3_0503 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain YPZ3_0503 IPR006172 DNA-directed DNA polymerase, family B YPZ3_0503 IPR012337 Ribonuclease H-like superfamily YPZ3_0503 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain YPZ3_0503 IPR017964 DNA-directed DNA polymerase, family B, conserved site YPZ3_0503 IPR023211 DNA polymerase, palm domain superfamily YPZ3_0504 IPR032818 DedA family YPZ3_0504 IPR032816 SNARE associated Golgi protein YPZ3_0505 IPR003439 ABC transporter-like YPZ3_0505 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0505 IPR017871 ABC transporter, conserved site YPZ3_0505 IPR003593 AAA+ ATPase domain YPZ3_0505 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ YPZ3_0506 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_0506 IPR035906 MetI-like superfamily YPZ3_0506 IPR005947 Thiamine ABC transporter, permease protein YPZ3_0507 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria YPZ3_0507 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter YPZ3_0507 IPR006061 Solute-binding family 1, conserved site YPZ3_0508 IPR023767 Transcriptional regulator SgrR YPZ3_0508 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0508 IPR000914 Solute-binding protein family 5 domain YPZ3_0508 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YPZ3_0508 IPR039424 Solute-binding protein family 5 YPZ3_0509 IPR020846 Major facilitator superfamily domain YPZ3_0509 IPR011701 Major facilitator superfamily YPZ3_0509 IPR004750 Sugar efflux YPZ3_0509 IPR036259 MFS transporter superfamily YPZ3_0510 IPR003593 AAA+ ATPase domain YPZ3_0510 IPR001270 ClpA/B family YPZ3_0510 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_0510 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0510 IPR002611 IstB-like ATP-binding protein YPZ3_0511 IPR012337 Ribonuclease H-like superfamily YPZ3_0511 IPR001584 Integrase, catalytic core YPZ3_0511 IPR036397 Ribonuclease H superfamily YPZ3_0511 IPR006120 Resolvase, HTH domain YPZ3_0511 IPR017894 HTH domain, IS21 transposase-type YPZ3_0512 IPR033940 3-isopropylmalate dehydratase, swivel domain YPZ3_0512 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPZ3_0512 IPR004431 3-isopropylmalate dehydratase, small subunit YPZ3_0512 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain YPZ3_0513 IPR033941 3-Isopropylmalate dehydratase, catalytic domain YPZ3_0513 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain YPZ3_0513 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPZ3_0513 IPR036008 Aconitase, iron-sulfur domain YPZ3_0513 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPZ3_0513 IPR004430 3-isopropylmalate dehydratase, large subunit YPZ3_0514 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPZ3_0514 IPR024084 Isopropylmalate dehydrogenase-like domain YPZ3_0514 IPR004429 Isopropylmalate dehydrogenase YPZ3_0515 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site YPZ3_0515 IPR013785 Aldolase-type TIM barrel YPZ3_0515 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily YPZ3_0515 IPR005671 2-isopropylmalate synthase, bacterial-type YPZ3_0515 IPR000891 Pyruvate carboxyltransferase YPZ3_0515 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YPZ3_0516 IPR036515 Transposase IS200-like superfamily YPZ3_0516 IPR002686 Transposase IS200-like YPZ3_0517 IPR000847 Transcription regulator HTH, LysR YPZ3_0517 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0517 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0517 IPR005119 LysR, substrate-binding YPZ3_0518 IPR020845 AMP-binding, conserved site YPZ3_0518 IPR000873 AMP-dependent synthetase/ligase YPZ3_0518 IPR042099 AMP-dependent synthetase-like superfamily YPZ3_0519 IPR000399 TPP-binding enzyme, conserved site YPZ3_0519 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPZ3_0519 IPR012000 Thiamine pyrophosphate enzyme, central domain YPZ3_0519 IPR029061 Thiamin diphosphate-binding fold YPZ3_0519 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPZ3_0519 IPR039368 Acetolactate synthase large subunit, TPP binding domain YPZ3_0519 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPZ3_0519 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPZ3_0520 IPR039557 AHAS, ACT domain YPZ3_0520 IPR002912 ACT domain YPZ3_0520 IPR019455 Acetolactate synthase, small subunit, C-terminal YPZ3_0520 IPR004789 Acetolactate synthase, small subunit YPZ3_0520 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal YPZ3_0522 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPZ3_0522 IPR000843 LacI-type HTH domain YPZ3_0522 IPR012781 D-fructose-responsive transcription factor YPZ3_0522 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_0522 IPR028082 Periplasmic binding protein-like I YPZ3_0523 IPR010574 L-alanine exporter AlaE YPZ3_0524 IPR020603 MraZ domain YPZ3_0524 IPR003444 Transcriptional regulator MraZ YPZ3_0524 IPR035644 MraZ, C-terminal YPZ3_0524 IPR035642 MraZ, N-terminal YPZ3_0524 IPR038619 MraZ superfamily YPZ3_0524 IPR007159 SpoVT-AbrB domain YPZ3_0524 IPR037914 SpoVT-AbrB domain superfamily YPZ3_0525 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_0525 IPR002903 Ribosomal RNA small subunit methyltransferase H YPZ3_0525 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily YPZ3_0526 IPR011922 Cell division protein FtsL YPZ3_0527 IPR001460 Penicillin-binding protein, transpeptidase YPZ3_0527 IPR036138 Penicillin-binding protein, dimerisation domain superfamily YPZ3_0527 IPR037532 Peptidoglycan D,D-transpeptidase FtsI YPZ3_0527 IPR012338 Beta-lactamase/transpeptidase-like YPZ3_0527 IPR005311 Penicillin-binding protein, dimerisation domain YPZ3_0528 IPR036565 Mur-like, catalytic domain superfamily YPZ3_0528 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase YPZ3_0528 IPR004101 Mur ligase, C-terminal YPZ3_0528 IPR036615 Mur ligase, C-terminal domain superfamily YPZ3_0528 IPR013221 Mur ligase, central YPZ3_0528 IPR000713 Mur ligase, N-terminal catalytic domain YPZ3_0528 IPR035911 MurE/MurF, N-terminal YPZ3_0529 IPR036615 Mur ligase, C-terminal domain superfamily YPZ3_0529 IPR013221 Mur ligase, central YPZ3_0529 IPR004101 Mur ligase, C-terminal YPZ3_0529 IPR036565 Mur-like, catalytic domain superfamily YPZ3_0529 IPR000713 Mur ligase, N-terminal catalytic domain YPZ3_0529 IPR035911 MurE/MurF, N-terminal YPZ3_0529 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YPZ3_0530 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YPZ3_0530 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase YPZ3_0530 IPR000715 Glycosyl transferase, family 4 YPZ3_0531 IPR036565 Mur-like, catalytic domain superfamily YPZ3_0531 IPR004101 Mur ligase, C-terminal YPZ3_0531 IPR036615 Mur ligase, C-terminal domain superfamily YPZ3_0531 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase YPZ3_0531 IPR013221 Mur ligase, central YPZ3_0532 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site YPZ3_0532 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA YPZ3_0532 IPR013437 Probable peptidoglycan glycosyltransferase FtsW YPZ3_0533 IPR004276 Glycosyltransferase family 28, N-terminal domain YPZ3_0533 IPR007235 Glycosyl transferase, family 28, C-terminal YPZ3_0533 IPR006009 N-acetylglucosaminyltransferase, MurG YPZ3_0534 IPR013221 Mur ligase, central YPZ3_0534 IPR004101 Mur ligase, C-terminal YPZ3_0534 IPR036565 Mur-like, catalytic domain superfamily YPZ3_0534 IPR036615 Mur ligase, C-terminal domain superfamily YPZ3_0534 IPR005758 UDP-N-acetylmuramate--L-alanine ligase YPZ3_0534 IPR000713 Mur ligase, N-terminal catalytic domain YPZ3_0535 IPR011095 D-alanine--D-alanine ligase, C-terminal YPZ3_0535 IPR005905 D-alanine--D-alanine ligase YPZ3_0535 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site YPZ3_0535 IPR013815 ATP-grasp fold, subdomain 1 YPZ3_0535 IPR011761 ATP-grasp fold YPZ3_0535 IPR016185 Pre-ATP-grasp domain superfamily YPZ3_0535 IPR011127 D-alanine--D-alanine ligase, N-terminal domain YPZ3_0536 IPR026579 Cell division protein FtsQ YPZ3_0536 IPR034746 POTRA domain YPZ3_0536 IPR013685 POTRA domain, FtsQ-type YPZ3_0536 IPR005548 Cell division protein FtsQ/DivIB YPZ3_0537 IPR003494 SHS2 domain inserted in FtsA YPZ3_0537 IPR020823 Cell division protein FtsA YPZ3_0538 IPR008280 Tubulin/FtsZ, C-terminal YPZ3_0538 IPR020805 Cell division protein FtsZ, conserved site YPZ3_0538 IPR000158 Cell division protein FtsZ YPZ3_0538 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain YPZ3_0538 IPR024757 Cell division protein FtsZ, C-terminal YPZ3_0538 IPR003008 Tubulin/FtsZ, GTPase domain YPZ3_0538 IPR036525 Tubulin/FtsZ, GTPase domain superfamily YPZ3_0539 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_0539 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal YPZ3_0539 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal YPZ3_0539 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase YPZ3_0541 IPR009502 Secretion monitor YPZ3_0542 IPR014018 SecA motor DEAD YPZ3_0542 IPR020937 SecA conserved site YPZ3_0542 IPR000185 Protein translocase subunit SecA YPZ3_0542 IPR004027 SEC-C motif YPZ3_0542 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0542 IPR011116 SecA Wing/Scaffold YPZ3_0542 IPR036266 SecA, Wing/Scaffold superfamily YPZ3_0542 IPR036670 SecA, preprotein cross-linking domain superfamily YPZ3_0542 IPR011130 SecA, preprotein cross-linking domain YPZ3_0542 IPR011115 SecA DEAD-like, N-terminal YPZ3_0543 IPR000086 NUDIX hydrolase domain YPZ3_0543 IPR003561 Mutator MutT YPZ3_0543 IPR020084 NUDIX hydrolase, conserved site YPZ3_0543 IPR020476 NUDIX hydrolase YPZ3_0543 IPR015797 NUDIX hydrolase-like domain superfamily YPZ3_0544 IPR001270 ClpA/B family YPZ3_0544 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_0544 IPR002611 IstB-like ATP-binding protein YPZ3_0544 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0544 IPR003593 AAA+ ATPase domain YPZ3_0545 IPR006120 Resolvase, HTH domain YPZ3_0545 IPR012337 Ribonuclease H-like superfamily YPZ3_0545 IPR036397 Ribonuclease H superfamily YPZ3_0545 IPR017894 HTH domain, IS21 transposase-type YPZ3_0545 IPR001584 Integrase, catalytic core YPZ3_0546 IPR032808 DoxX family YPZ3_0547 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III YPZ3_0548 IPR010279 Inner membrane protein YqjD/ElaB YPZ3_0550 IPR027398 SecD export protein N-terminal TM domain YPZ3_0550 IPR026574 Modulator protein MzrA YPZ3_0551 IPR032816 SNARE associated Golgi protein YPZ3_0551 IPR032818 DedA family YPZ3_0553 IPR011711 GntR, C-terminal YPZ3_0553 IPR008920 Transcription regulator FadR/GntR, C-terminal YPZ3_0553 IPR000524 Transcription regulator HTH, GntR YPZ3_0553 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0553 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0554 IPR036259 MFS transporter superfamily YPZ3_0554 IPR020846 Major facilitator superfamily domain YPZ3_0554 IPR011701 Major facilitator superfamily YPZ3_0555 IPR003766 Uronate isomerase YPZ3_0555 IPR032466 Metal-dependent hydrolase YPZ3_0556 IPR013118 Mannitol dehydrogenase, C-terminal YPZ3_0556 IPR013131 Mannitol dehydrogenase, N-terminal YPZ3_0556 IPR036291 NAD(P)-binding domain superfamily YPZ3_0556 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPZ3_0556 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPZ3_0556 IPR023668 Altronate oxidoreductase YPZ3_0557 IPR007392 D-galactarate/Altronate dehydratase, C-terminal YPZ3_0557 IPR013974 SAF domain YPZ3_0558 IPR026267 Inner membrane protein YgjV YPZ3_0558 IPR019629 Uncharacterised protein family HI1736/YgjV YPZ3_0560 IPR023025 Serine/threonine transporter SstT YPZ3_0560 IPR001991 Sodium:dicarboxylate symporter YPZ3_0560 IPR036458 Sodium:dicarboxylate symporter superfamily YPZ3_0561 IPR036291 NAD(P)-binding domain superfamily YPZ3_0561 IPR000683 Oxidoreductase, N-terminal YPZ3_0562 IPR002725 Protein of unknown function DUF45 YPZ3_0563 IPR036709 Autotransporter beta-domain superfamily YPZ3_0563 IPR005546 Autotransporter beta-domain YPZ3_0563 IPR011050 Pectin lyase fold/virulence factor YPZ3_0563 IPR006315 Outer membrane autotransporter barrel YPZ3_0564 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPZ3_0564 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD YPZ3_0564 IPR007848 Methyltransferase small domain YPZ3_0564 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_0565 IPR023753 FAD/NAD(P)-binding domain YPZ3_0565 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPZ3_0565 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_0565 IPR013785 Aldolase-type TIM barrel YPZ3_0566 IPR005325 Protein of unknown function DUF308, membrane YPZ3_0569 IPR036465 von Willebrand factor A-like domain superfamily YPZ3_0569 IPR002035 von Willebrand factor, type A YPZ3_0569 IPR011392 Tellurite resistance, TerY YPZ3_0571 IPR003325 TerD domain YPZ3_0572 IPR011392 Tellurite resistance, TerY YPZ3_0572 IPR002035 von Willebrand factor, type A YPZ3_0572 IPR036465 von Willebrand factor A-like domain superfamily YPZ3_0573 IPR013686 Polypeptide-transport-associated, ShlB-type YPZ3_0573 IPR034746 POTRA domain YPZ3_0573 IPR005565 Haemolysin activator HlyB, C-terminal YPZ3_0573 IPR035251 ShlB, POTRA domain YPZ3_0573 IPR027282 Two partner secretion pathway transporter YPZ3_0574 IPR025157 Hemagglutinin repeat YPZ3_0574 IPR008638 Filamentous haemagglutinin, N-terminal YPZ3_0574 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPZ3_0574 IPR024973 ESPR domain YPZ3_0574 IPR012334 Pectin lyase fold YPZ3_0574 IPR006914 VENN motif-containing domain YPZ3_0574 IPR011050 Pectin lyase fold/virulence factor YPZ3_0575 IPR008638 Filamentous haemagglutinin, N-terminal YPZ3_0575 IPR024973 ESPR domain YPZ3_0575 IPR012334 Pectin lyase fold YPZ3_0575 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPZ3_0575 IPR006914 VENN motif-containing domain YPZ3_0575 IPR011050 Pectin lyase fold/virulence factor YPZ3_0575 IPR025157 Hemagglutinin repeat YPZ3_0580 IPR003593 AAA+ ATPase domain YPZ3_0580 IPR003439 ABC transporter-like YPZ3_0580 IPR005116 Transport-associated OB, type 1 YPZ3_0580 IPR040582 MalK, OB fold domain YPZ3_0580 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0580 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_0580 IPR017871 ABC transporter, conserved site YPZ3_0581 IPR012341 Six-hairpin glycosidase-like superfamily YPZ3_0581 IPR033432 Glycosyl hydrolase 36, catalytic domain YPZ3_0581 IPR008928 Six-hairpin glycosidase superfamily YPZ3_0582 IPR028082 Periplasmic binding protein-like I YPZ3_0582 IPR000843 LacI-type HTH domain YPZ3_0582 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_0583 IPR006059 Bacterial extracellular solute-binding protein YPZ3_0584 IPR035906 MetI-like superfamily YPZ3_0584 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_0585 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_0585 IPR035906 MetI-like superfamily YPZ3_0587 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily YPZ3_0587 IPR019800 Glycoside hydrolase, family 3, active site YPZ3_0587 IPR001764 Glycoside hydrolase, family 3, N-terminal YPZ3_0587 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily YPZ3_0587 IPR026891 Fibronectin type III-like domain YPZ3_0587 IPR017853 Glycoside hydrolase superfamily YPZ3_0587 IPR002772 Glycoside hydrolase family 3 C-terminal domain YPZ3_0587 IPR013783 Immunoglobulin-like fold YPZ3_0589 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein YPZ3_0590 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPZ3_0590 IPR005694 Efflux pump membrane protein YPZ3_0590 IPR030196 Multidrug resistance protein MdtN YPZ3_0595 IPR006056 RidA family YPZ3_0595 IPR019897 RidA, conserved site YPZ3_0595 IPR006175 YjgF/YER057c/UK114 family YPZ3_0595 IPR035959 RutC-like superfamily YPZ3_0599 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0599 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0599 IPR005119 LysR, substrate-binding YPZ3_0599 IPR000847 Transcription regulator HTH, LysR YPZ3_0604 IPR007630 RNA polymerase sigma-70 region 4 YPZ3_0604 IPR007624 RNA polymerase sigma-70 region 3 YPZ3_0604 IPR007627 RNA polymerase sigma-70 region 2 YPZ3_0604 IPR007127 RNA polymerase sigma factor 70, region 1.1 YPZ3_0604 IPR042189 Sigma-70 factor, region 1.1 superfamily YPZ3_0604 IPR013325 RNA polymerase sigma factor, region 2 YPZ3_0604 IPR013324 RNA polymerase sigma factor, region 3/4-like YPZ3_0604 IPR012760 RNA polymerase sigma factor RpoD, C-terminal YPZ3_0604 IPR028630 RNA polymerase sigma factor RpoD YPZ3_0604 IPR007631 RNA polymerase sigma factor 70, non-essential domain YPZ3_0604 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0604 IPR009042 RNA polymerase sigma-70 region 1.2 YPZ3_0604 IPR000943 RNA polymerase sigma-70 YPZ3_0604 IPR014284 RNA polymerase sigma-70 like domain YPZ3_0605 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YPZ3_0605 IPR013264 DNA primase, catalytic core, N-terminal YPZ3_0605 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily YPZ3_0605 IPR019475 DNA primase, DnaB-helicase binding domain YPZ3_0605 IPR006171 TOPRIM domain YPZ3_0605 IPR002694 Zinc finger, CHC2-type YPZ3_0605 IPR006295 DNA primase, DnaG YPZ3_0605 IPR013173 DNA primase DnaG, DnaB-binding domain YPZ3_0605 IPR036977 DNA Primase, CHC2-type zinc finger YPZ3_0605 IPR030846 DNA primase DnaG, bacteria YPZ3_0605 IPR034151 Bacterial DnaG primase, TOPRIM domain YPZ3_0606 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD YPZ3_0606 IPR017860 Peptidase M22, conserved site YPZ3_0606 IPR017861 Kae1/TsaD family YPZ3_0606 IPR000905 Gcp-like domain YPZ3_0607 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY YPZ3_0608 IPR006157 Dihydroneopterin aldolase/epimerase domain YPZ3_0608 IPR006156 Dihydroneopterin aldolase YPZ3_0609 IPR003824 Undecaprenyl-diphosphatase UppP YPZ3_0610 IPR003607 HD/PDEase domain YPZ3_0610 IPR006674 HD domain YPZ3_0610 IPR012006 tRNA nucleotidyltransferase, proteobacteria YPZ3_0610 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain YPZ3_0610 IPR002646 Poly A polymerase, head domain YPZ3_0611 IPR016476 SH3 domain protein YPZ3_0611 IPR003646 SH3-like domain, bacterial-type YPZ3_0612 IPR039013 Inorganic triphosphatase YgiF YPZ3_0612 IPR007899 CHAD domain YPZ3_0612 IPR033469 CYTH-like domain superfamily YPZ3_0612 IPR023577 CYTH domain YPZ3_0613 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YPZ3_0613 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme YPZ3_0613 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain YPZ3_0614 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_0614 IPR029056 Ribokinase-like YPZ3_0614 IPR011913 RfaE bifunctional protein, domain I YPZ3_0614 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPZ3_0614 IPR023030 Bifunctional protein HldE YPZ3_0614 IPR004821 Cytidyltransferase-like domain YPZ3_0614 IPR011914 RfaE bifunctional protein, domain II YPZ3_0614 IPR011611 Carbohydrate kinase PfkB YPZ3_0615 IPR002293 Amino acid/polyamine transporter I YPZ3_0616 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YPZ3_0616 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB YPZ3_0617 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YPZ3_0617 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type YPZ3_0618 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain YPZ3_0618 IPR016185 Pre-ATP-grasp domain superfamily YPZ3_0619 IPR009576 Biofilm formation YgiB YPZ3_0620 IPR010130 Type I secretion outer membrane protein, TolC YPZ3_0620 IPR003423 Outer membrane efflux protein YPZ3_0621 IPR000086 NUDIX hydrolase domain YPZ3_0621 IPR020084 NUDIX hydrolase, conserved site YPZ3_0621 IPR015797 NUDIX hydrolase-like domain superfamily YPZ3_0621 IPR004385 Nucleoside diphosphate pyrophosphatase YPZ3_0622 IPR009659 Protein of unknown function DUF1249 YPZ3_0623 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA YPZ3_0623 IPR029052 Metallo-dependent phosphatase-like YPZ3_0623 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPZ3_0624 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YPZ3_0624 IPR029058 Alpha/Beta hydrolase fold YPZ3_0625 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YPZ3_0625 IPR006171 TOPRIM domain YPZ3_0625 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPZ3_0625 IPR001241 DNA topoisomerase, type IIA YPZ3_0625 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 YPZ3_0625 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal YPZ3_0625 IPR018522 DNA topoisomerase, type IIA, conserved site YPZ3_0625 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative YPZ3_0625 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_0625 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_0625 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_0625 IPR002288 DNA gyrase B subunit, C-terminal YPZ3_0626 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0626 IPR005119 LysR, substrate-binding YPZ3_0626 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0626 IPR000847 Transcription regulator HTH, LysR YPZ3_0627 IPR029039 Flavoprotein-like superfamily YPZ3_0627 IPR003680 Flavodoxin-like fold YPZ3_0628 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YPZ3_0628 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal YPZ3_0628 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily YPZ3_0628 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta YPZ3_0628 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative YPZ3_0628 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat YPZ3_0628 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YPZ3_0629 IPR002123 Phospholipid/glycerol acyltransferase YPZ3_0629 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase YPZ3_0630 IPR008972 Cupredoxin YPZ3_0630 IPR011707 Multicopper oxidase, type 3 YPZ3_0630 IPR011706 Multicopper oxidase, type 2 YPZ3_0630 IPR026589 Cell division protein FtsP YPZ3_0630 IPR006311 Twin-arginine translocation pathway, signal sequence YPZ3_0631 IPR024560 Uncharacterised protein family UPF0313, C-terminal YPZ3_0631 IPR020612 Methylthiotransferase, conserved site YPZ3_0631 IPR006638 Elp3/MiaB/NifB YPZ3_0631 IPR013704 Uncharacterised protein family UPF0313, N-terminal YPZ3_0631 IPR007197 Radical SAM YPZ3_0631 IPR023404 Radical SAM, alpha/beta horseshoe YPZ3_0631 IPR022946 Uncharacterised protein family UPF0313 YPZ3_0632 IPR006638 Elp3/MiaB/NifB YPZ3_0632 IPR007197 Radical SAM YPZ3_0632 IPR020612 Methylthiotransferase, conserved site YPZ3_0632 IPR023404 Radical SAM, alpha/beta horseshoe YPZ3_0632 IPR022946 Uncharacterised protein family UPF0313 YPZ3_0632 IPR013704 Uncharacterised protein family UPF0313, N-terminal YPZ3_0632 IPR024560 Uncharacterised protein family UPF0313, C-terminal YPZ3_0633 IPR018170 Aldo/keto reductase, conserved site YPZ3_0633 IPR020471 Aldo/keto reductase YPZ3_0633 IPR036812 NADP-dependent oxidoreductase domain superfamily YPZ3_0633 IPR023210 NADP-dependent oxidoreductase domain YPZ3_0634 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YPZ3_0634 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPZ3_0635 IPR009057 Homeobox-like domain superfamily YPZ3_0635 IPR018060 DNA binding HTH domain, AraC-type YPZ3_0635 IPR009594 Transcription regulator HTH, AraC, N-terminal YPZ3_0636 IPR032818 DedA family YPZ3_0636 IPR032816 SNARE associated Golgi protein YPZ3_0637 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_0637 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_0637 IPR006233 Cystathionine beta-lyase, bacterial YPZ3_0637 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPZ3_0637 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_0638 IPR002898 MotA/TolQ/ExbB proton channel YPZ3_0638 IPR014164 TonB-system energizer ExbB type-1 YPZ3_0639 IPR003400 Biopolymer transport protein ExbD/TolR YPZ3_0639 IPR014170 TonB system transport protein ExbD type-1 YPZ3_0646 IPR022399 Helicase/secretion neighbourhood ATPase YPZ3_0646 IPR001482 Type II/IV secretion system protein YPZ3_0646 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0648 IPR032789 Pilus formation protein, N-terminal YPZ3_0648 IPR004846 Type II/III secretion system YPZ3_0648 IPR014004 Transport-associated and nodulation domain, bacteria YPZ3_0648 IPR007055 BON domain YPZ3_0648 IPR001775 GspD/PilQ family YPZ3_0649 IPR004846 Type II/III secretion system YPZ3_0649 IPR014004 Transport-associated and nodulation domain, bacteria YPZ3_0649 IPR032789 Pilus formation protein, N-terminal YPZ3_0649 IPR001775 GspD/PilQ family YPZ3_0649 IPR007055 BON domain YPZ3_0652 IPR002686 Transposase IS200-like YPZ3_0652 IPR036515 Transposase IS200-like superfamily YPZ3_0653 IPR036515 Transposase IS200-like superfamily YPZ3_0653 IPR002686 Transposase IS200-like YPZ3_0654 IPR000015 Outer membrane usher protein YPZ3_0654 IPR018030 Fimbrial membrane usher, conserved site YPZ3_0654 IPR042186 Outer membrane usher protein FimD, plug domain YPZ3_0654 IPR025949 PapC-like, C-terminal domain YPZ3_0654 IPR025885 PapC, N-terminal domain YPZ3_0654 IPR037224 PapC, N-terminal domain superfamily YPZ3_0655 IPR008962 PapD-like superfamily YPZ3_0655 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPZ3_0655 IPR001829 Pili assembly chaperone, bacterial YPZ3_0655 IPR016148 Pili assembly chaperone, C-terminal YPZ3_0655 IPR018046 Pili assembly chaperone, conserved site YPZ3_0655 IPR016147 Pili assembly chaperone, N-terminal YPZ3_0655 IPR013783 Immunoglobulin-like fold YPZ3_0656 IPR015303 Fimbrial adhesin F17-AG, lectin domain YPZ3_0656 IPR036937 Fimbrial-type adhesion domain superfamily YPZ3_0656 IPR000259 Fimbrial-type adhesion domain YPZ3_0656 IPR008966 Adhesion domain superfamily YPZ3_0657 IPR002491 ABC transporter periplasmic binding domain YPZ3_0659 IPR042193 FHIPEP, domain 3 YPZ3_0659 IPR025505 FHIPEP conserved site YPZ3_0659 IPR006301 Flagellar biosynthesis protein FlhA YPZ3_0659 IPR042196 FHIPEP, domain 4 YPZ3_0659 IPR001712 Type III secretion system FHIPEP YPZ3_0659 IPR042194 FHIPEP, domain 1 YPZ3_0660 IPR042193 FHIPEP, domain 3 YPZ3_0660 IPR042196 FHIPEP, domain 4 YPZ3_0660 IPR025505 FHIPEP conserved site YPZ3_0660 IPR006301 Flagellar biosynthesis protein FlhA YPZ3_0660 IPR001712 Type III secretion system FHIPEP YPZ3_0660 IPR042194 FHIPEP, domain 1 YPZ3_0661 IPR006135 Type III secretion system substrate exporter YPZ3_0661 IPR006136 Flagellar biosynthetic protein FlhB YPZ3_0661 IPR029025 Type III secretion system substrate exporter, C-terminal YPZ3_0662 IPR006303 Flagellar biosynthesis protein FliR YPZ3_0662 IPR002010 Type III secretion system inner membrane R protein YPZ3_0663 IPR005837 Flagellar transport protein FliP YPZ3_0663 IPR005838 Type III secretion system inner membrane P protein YPZ3_0664 IPR036429 SpoA-like superfamily YPZ3_0664 IPR012826 Flagellar motor switch FliN YPZ3_0664 IPR001543 Surface presentation of antigen (SpoA) YPZ3_0664 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPZ3_0666 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0666 IPR003593 AAA+ ATPase domain YPZ3_0666 IPR002197 DNA binding HTH domain, Fis-type YPZ3_0666 IPR002078 RNA polymerase sigma factor 54 interaction domain YPZ3_0666 IPR001789 Signal transduction response regulator, receiver domain YPZ3_0666 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPZ3_0666 IPR009057 Homeobox-like domain superfamily YPZ3_0666 IPR011006 CheY-like superfamily YPZ3_0666 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPZ3_0666 IPR025944 Sigma-54 interaction domain, conserved site YPZ3_0667 IPR001624 Flagellar hook-basal body complex protein FliE YPZ3_0668 IPR000067 Flagellar M-ring protein FliF YPZ3_0668 IPR006182 Secretory protein YscJ/FliF YPZ3_0668 IPR013556 Flagellar M-ring C-terminal YPZ3_0671 IPR040627 T3SS EscN ATPase, C-terminal YPZ3_0671 IPR003593 AAA+ ATPase domain YPZ3_0671 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPZ3_0671 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPZ3_0671 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0671 IPR020005 Flagellar export ATPase FliI, clade 1 YPZ3_0671 IPR005714 ATPase, type III secretion system, FliI/YscN YPZ3_0671 IPR032463 ATPase, type III secretion system, FliI YPZ3_0674 IPR039246 Flagellar protein FlgA YPZ3_0674 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YPZ3_0674 IPR013974 SAF domain YPZ3_0675 IPR006300 Flagellar basal-body rod protein FlgB YPZ3_0675 IPR001444 Flagellar basal body rod protein, N-terminal YPZ3_0675 IPR019776 Flagellar basal body rod protein, conserved site YPZ3_0676 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPZ3_0676 IPR019776 Flagellar basal body rod protein, conserved site YPZ3_0676 IPR001444 Flagellar basal body rod protein, N-terminal YPZ3_0676 IPR006299 Flagellar basal-body rod protein FlgC YPZ3_0677 IPR005648 Flagellar hook capping protein YPZ3_0677 IPR025965 FlgD Ig-like domain YPZ3_0677 IPR025963 FlgD Tudor-like domain YPZ3_0678 IPR019776 Flagellar basal body rod protein, conserved site YPZ3_0678 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPZ3_0678 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPZ3_0678 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPZ3_0678 IPR001444 Flagellar basal body rod protein, N-terminal YPZ3_0678 IPR037058 Flagellar hook protein FlgE superfamily YPZ3_0678 IPR011491 Flagellar hook protein FlgE YPZ3_0680 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPZ3_0680 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPZ3_0680 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPZ3_0680 IPR001444 Flagellar basal body rod protein, N-terminal YPZ3_0680 IPR019776 Flagellar basal body rod protein, conserved site YPZ3_0681 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPZ3_0681 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPZ3_0681 IPR012834 Flagellar basal-body rod FlgG YPZ3_0681 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPZ3_0681 IPR019776 Flagellar basal body rod protein, conserved site YPZ3_0681 IPR001444 Flagellar basal body rod protein, N-terminal YPZ3_0682 IPR000527 Flagellar L-ring protein YPZ3_0683 IPR001782 Flagellar P-ring protein YPZ3_0684 IPR002371 Flagellar hook-associated protein 1 YPZ3_0684 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPZ3_0684 IPR001444 Flagellar basal body rod protein, N-terminal YPZ3_0688 IPR039420 Transcriptional regulatory protein WalR-like YPZ3_0688 IPR011990 Tetratricopeptide-like helical domain superfamily YPZ3_0688 IPR040970 CadC C-terminal domain 1 YPZ3_0688 IPR001867 OmpR/PhoB-type DNA-binding domain YPZ3_0688 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_0688 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0689 IPR001492 Flagellin YPZ3_0689 IPR001029 Flagellin, D0/D1 domain YPZ3_0689 IPR042187 Flagellin, C-terminal domain, subdomain 2 YPZ3_0690 IPR001029 Flagellin, D0/D1 domain YPZ3_0690 IPR042187 Flagellin, C-terminal domain, subdomain 2 YPZ3_0690 IPR001492 Flagellin YPZ3_0691 IPR001492 Flagellin YPZ3_0691 IPR001029 Flagellin, D0/D1 domain YPZ3_0691 IPR042187 Flagellin, C-terminal domain, subdomain 2 YPZ3_0692 IPR010810 Flagellin hook, IN motif YPZ3_0692 IPR040026 Flagellar hook-associated protein 2 YPZ3_0692 IPR010809 Flagellar hook-associated protein 2, C-terminal YPZ3_0692 IPR003481 Flagellar hook-associated protein 2, N-terminal YPZ3_0697 IPR014284 RNA polymerase sigma-70 like domain YPZ3_0697 IPR012845 RNA polymerase sigma factor, FliA/WhiG YPZ3_0697 IPR013325 RNA polymerase sigma factor, region 2 YPZ3_0697 IPR013324 RNA polymerase sigma factor, region 3/4-like YPZ3_0697 IPR000943 RNA polymerase sigma-70 YPZ3_0697 IPR007627 RNA polymerase sigma-70 region 2 YPZ3_0697 IPR007630 RNA polymerase sigma-70 region 4 YPZ3_0698 IPR022522 Flagellar motor stator, MotA YPZ3_0698 IPR002898 MotA/TolQ/ExbB proton channel YPZ3_0698 IPR000540 Flagellar motor protein MotA, conserved site YPZ3_0699 IPR006665 OmpA-like domain YPZ3_0699 IPR025713 Motility protein B, N-terminal domain YPZ3_0699 IPR036737 OmpA-like domain superfamily YPZ3_0703 IPR012337 Ribonuclease H-like superfamily YPZ3_0703 IPR001584 Integrase, catalytic core YPZ3_0703 IPR038965 Transposase InsF-like YPZ3_0703 IPR025948 HTH-like domain YPZ3_0703 IPR036397 Ribonuclease H superfamily YPZ3_0704 IPR035919 EAL domain superfamily YPZ3_0704 IPR000014 PAS domain YPZ3_0704 IPR005330 MHYT domain YPZ3_0704 IPR029787 Nucleotide cyclase YPZ3_0704 IPR035965 PAS domain superfamily YPZ3_0704 IPR000160 GGDEF domain YPZ3_0704 IPR001633 EAL domain YPZ3_0705 IPR006143 RND efflux pump, membrane fusion protein YPZ3_0705 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPZ3_0706 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPZ3_0706 IPR001036 Acriflavin resistance protein YPZ3_0706 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPZ3_0707 IPR012927 ShET2 enterotoxin, N-terminal YPZ3_0707 IPR002110 Ankyrin repeat YPZ3_0707 IPR036770 Ankyrin repeat-containing domain superfamily YPZ3_0709 IPR011050 Pectin lyase fold/virulence factor YPZ3_0709 IPR006315 Outer membrane autotransporter barrel YPZ3_0709 IPR005546 Autotransporter beta-domain YPZ3_0709 IPR036709 Autotransporter beta-domain superfamily YPZ3_0710 IPR032675 Leucine-rich repeat domain superfamily YPZ3_0710 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPZ3_0710 IPR029487 Novel E3 ligase domain YPZ3_0711 IPR032675 Leucine-rich repeat domain superfamily YPZ3_0711 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPZ3_0711 IPR029487 Novel E3 ligase domain YPZ3_0711 IPR032675 Leucine-rich repeat domain superfamily YPZ3_0711 IPR029487 Novel E3 ligase domain YPZ3_0711 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPZ3_0712 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPZ3_0712 IPR029487 Novel E3 ligase domain YPZ3_0712 IPR032675 Leucine-rich repeat domain superfamily YPZ3_0713 IPR011540 AbgT, Proteobacteria YPZ3_0713 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT YPZ3_0714 IPR011650 Peptidase M20, dimerisation domain YPZ3_0714 IPR036264 Bacterial exopeptidase dimerisation domain YPZ3_0714 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPZ3_0714 IPR002933 Peptidase M20 YPZ3_0714 IPR010161 Peptidase M20B, tripeptide aminopeptidase YPZ3_0715 IPR039426 Vitamin B12 transporter BtuB-like YPZ3_0715 IPR012910 TonB-dependent receptor, plug domain YPZ3_0715 IPR000531 TonB-dependent receptor-like, beta-barrel YPZ3_0715 IPR010105 TonB-dependent siderophore receptor YPZ3_0715 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPZ3_0716 IPR014030 Beta-ketoacyl synthase, N-terminal YPZ3_0716 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPZ3_0716 IPR001242 Condensation domain YPZ3_0716 IPR016039 Thiolase-like YPZ3_0716 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_0716 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_0716 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_0716 IPR042099 AMP-dependent synthetase-like superfamily YPZ3_0716 IPR018201 Beta-ketoacyl synthase, active site YPZ3_0716 IPR000873 AMP-dependent synthetase/ligase YPZ3_0716 IPR005814 Aminotransferase class-III YPZ3_0716 IPR025110 AMP-binding enzyme, C-terminal domain YPZ3_0716 IPR009081 Phosphopantetheine binding ACP domain YPZ3_0716 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPZ3_0716 IPR020845 AMP-binding, conserved site YPZ3_0716 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPZ3_0716 IPR032821 Ketoacyl-synthetase, C-terminal extension YPZ3_0716 IPR006162 Phosphopantetheine attachment site YPZ3_0716 IPR014031 Beta-ketoacyl synthase, C-terminal YPZ3_0716 IPR036736 ACP-like superfamily YPZ3_0716 IPR010071 Amino acid adenylation domain YPZ3_0717 IPR016039 Thiolase-like YPZ3_0717 IPR009081 Phosphopantetheine binding ACP domain YPZ3_0717 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPZ3_0717 IPR013968 Polyketide synthase, ketoreductase domain YPZ3_0717 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPZ3_0717 IPR032821 Ketoacyl-synthetase, C-terminal extension YPZ3_0717 IPR036291 NAD(P)-binding domain superfamily YPZ3_0717 IPR014030 Beta-ketoacyl synthase, N-terminal YPZ3_0717 IPR014031 Beta-ketoacyl synthase, C-terminal YPZ3_0717 IPR018201 Beta-ketoacyl synthase, active site YPZ3_0717 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPZ3_0717 IPR014043 Acyl transferase YPZ3_0717 IPR036736 ACP-like superfamily YPZ3_0717 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPZ3_0718 IPR017894 HTH domain, IS21 transposase-type YPZ3_0718 IPR001584 Integrase, catalytic core YPZ3_0718 IPR006120 Resolvase, HTH domain YPZ3_0718 IPR012337 Ribonuclease H-like superfamily YPZ3_0718 IPR036397 Ribonuclease H superfamily YPZ3_0719 IPR001270 ClpA/B family YPZ3_0719 IPR002611 IstB-like ATP-binding protein YPZ3_0719 IPR003593 AAA+ ATPase domain YPZ3_0719 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_0719 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0720 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPZ3_0720 IPR009081 Phosphopantetheine binding ACP domain YPZ3_0720 IPR000873 AMP-dependent synthetase/ligase YPZ3_0720 IPR020845 AMP-binding, conserved site YPZ3_0720 IPR036736 ACP-like superfamily YPZ3_0720 IPR042099 AMP-dependent synthetase-like superfamily YPZ3_0720 IPR006162 Phosphopantetheine attachment site YPZ3_0720 IPR001242 Condensation domain YPZ3_0720 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPZ3_0720 IPR013217 Methyltransferase type 12 YPZ3_0720 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_0720 IPR010071 Amino acid adenylation domain YPZ3_0721 IPR010071 Amino acid adenylation domain YPZ3_0721 IPR036736 ACP-like superfamily YPZ3_0721 IPR025110 AMP-binding enzyme, C-terminal domain YPZ3_0721 IPR020845 AMP-binding, conserved site YPZ3_0721 IPR000873 AMP-dependent synthetase/ligase YPZ3_0721 IPR042099 AMP-dependent synthetase-like superfamily YPZ3_0721 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPZ3_0721 IPR001242 Condensation domain YPZ3_0721 IPR009081 Phosphopantetheine binding ACP domain YPZ3_0722 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPZ3_0722 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_0722 IPR006162 Phosphopantetheine attachment site YPZ3_0722 IPR010071 Amino acid adenylation domain YPZ3_0722 IPR036736 ACP-like superfamily YPZ3_0722 IPR020845 AMP-binding, conserved site YPZ3_0722 IPR000873 AMP-dependent synthetase/ligase YPZ3_0722 IPR042099 AMP-dependent synthetase-like superfamily YPZ3_0722 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPZ3_0722 IPR001242 Condensation domain YPZ3_0722 IPR013217 Methyltransferase type 12 YPZ3_0722 IPR009081 Phosphopantetheine binding ACP domain YPZ3_0725 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_0725 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS YPZ3_0725 IPR020802 Polyketide synthase, thioesterase domain YPZ3_0725 IPR029058 Alpha/Beta hydrolase fold YPZ3_0725 IPR001031 Thioesterase YPZ3_0727 IPR017871 ABC transporter, conserved site YPZ3_0727 IPR013113 FAD-binding 9, siderophore-interacting YPZ3_0727 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0727 IPR003439 ABC transporter-like YPZ3_0727 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPZ3_0727 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPZ3_0727 IPR011527 ABC transporter type 1, transmembrane domain YPZ3_0727 IPR003593 AAA+ ATPase domain YPZ3_0727 IPR017927 FAD-binding domain, ferredoxin reductase-type YPZ3_0727 IPR017938 Riboflavin synthase-like beta-barrel YPZ3_0727 IPR007037 Siderophore-interacting protein, C-terminal domain YPZ3_0728 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0728 IPR003593 AAA+ ATPase domain YPZ3_0728 IPR003439 ABC transporter-like YPZ3_0728 IPR017871 ABC transporter, conserved site YPZ3_0728 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPZ3_0728 IPR011527 ABC transporter type 1, transmembrane domain YPZ3_0728 IPR039421 Type I protein exporter YPZ3_0728 IPR011917 ABC transporter, lipid A export, MsbA YPZ3_0731 IPR003474 Gluconate transporter YPZ3_0733 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPZ3_0733 IPR005546 Autotransporter beta-domain YPZ3_0733 IPR011050 Pectin lyase fold/virulence factor YPZ3_0733 IPR036709 Autotransporter beta-domain superfamily YPZ3_0733 IPR006315 Outer membrane autotransporter barrel YPZ3_0733 IPR013425 Autotransporter-associated beta strand repeat YPZ3_0734 IPR006315 Outer membrane autotransporter barrel YPZ3_0734 IPR036709 Autotransporter beta-domain superfamily YPZ3_0734 IPR013425 Autotransporter-associated beta strand repeat YPZ3_0734 IPR011050 Pectin lyase fold/virulence factor YPZ3_0734 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPZ3_0734 IPR005546 Autotransporter beta-domain YPZ3_0735 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPZ3_0735 IPR037026 Vgr protein, OB-fold domain superfamily YPZ3_0735 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPZ3_0735 IPR006531 Gp5 N-terminal YPZ3_0737 IPR031325 RHS repeat YPZ3_0737 IPR022385 Rhs repeat-associated core YPZ3_0737 IPR001826 RHS protein YPZ3_0737 IPR006530 YD repeat YPZ3_0739 IPR001898 Solute carrier family 13 YPZ3_0739 IPR031312 Sodium/sulphate symporter, conserved site YPZ3_0740 IPR028082 Periplasmic binding protein-like I YPZ3_0740 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_0740 IPR000843 LacI-type HTH domain YPZ3_0741 IPR025948 HTH-like domain YPZ3_0741 IPR001584 Integrase, catalytic core YPZ3_0741 IPR012337 Ribonuclease H-like superfamily YPZ3_0741 IPR036397 Ribonuclease H superfamily YPZ3_0741 IPR038965 Transposase InsF-like YPZ3_0743 IPR001927 Sodium:galactoside symporter YPZ3_0743 IPR018043 Sodium:galactoside symporter, conserved site YPZ3_0743 IPR020846 Major facilitator superfamily domain YPZ3_0743 IPR039672 Lactose permease-like YPZ3_0743 IPR036259 MFS transporter superfamily YPZ3_0744 IPR039426 Vitamin B12 transporter BtuB-like YPZ3_0744 IPR010916 TonB box, conserved site YPZ3_0744 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPZ3_0744 IPR012910 TonB-dependent receptor, plug domain YPZ3_0744 IPR010917 TonB-dependent receptor, conserved site YPZ3_0744 IPR010105 TonB-dependent siderophore receptor YPZ3_0744 IPR037066 TonB-dependent receptor, plug domain superfamily YPZ3_0744 IPR000531 TonB-dependent receptor-like, beta-barrel YPZ3_0745 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_0745 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YPZ3_0746 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPZ3_0746 IPR022770 Ferric iron reductase FhuF domain YPZ3_0746 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPZ3_0747 IPR019432 Siderophore biosynthesis protein, conserved domain YPZ3_0747 IPR016181 Acyl-CoA N-acyltransferase YPZ3_0748 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPZ3_0748 IPR022770 Ferric iron reductase FhuF domain YPZ3_0748 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPZ3_0749 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPZ3_0749 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPZ3_0749 IPR022770 Ferric iron reductase FhuF domain YPZ3_0753 IPR000792 Transcription regulator LuxR, C-terminal YPZ3_0753 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_0753 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YPZ3_0753 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YPZ3_0753 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0754 IPR016181 Acyl-CoA N-acyltransferase YPZ3_0754 IPR018311 Autoinducer synthesis, conserved site YPZ3_0754 IPR001690 Autoinducer synthase YPZ3_0755 IPR003675 CAAX prenyl protease 2 YPZ3_0760 IPR006690 Outer membrane protein, OmpA-like, conserved site YPZ3_0760 IPR036737 OmpA-like domain superfamily YPZ3_0760 IPR028974 TSP type-3 repeat YPZ3_0760 IPR008722 Outer membrane porin F, N-terminal YPZ3_0760 IPR006665 OmpA-like domain YPZ3_0760 IPR006664 Outer membrane protein, bacterial YPZ3_0760 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPZ3_0762 IPR036628 Clp, N-terminal domain superfamily YPZ3_0762 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0762 IPR041546 ClpA/ClpB, AAA lid domain YPZ3_0762 IPR018368 ClpA/B, conserved site 1 YPZ3_0762 IPR003593 AAA+ ATPase domain YPZ3_0762 IPR001270 ClpA/B family YPZ3_0762 IPR004176 Clp, N-terminal YPZ3_0762 IPR003959 ATPase, AAA-type, core YPZ3_0762 IPR017729 Type VI secretion system, ATPase ClpV1 YPZ3_0762 IPR019489 Clp ATPase, C-terminal YPZ3_0766 IPR005063 Transposase, IS1 YPZ3_0768 IPR011006 CheY-like superfamily YPZ3_0768 IPR000310 Orn/Lys/Arg decarboxylase, major domain YPZ3_0768 IPR011193 Ornithine/lysine/arginine decarboxylase YPZ3_0768 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_0768 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_0768 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily YPZ3_0768 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_0768 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal YPZ3_0768 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal YPZ3_0768 IPR027464 Ornithine decarboxylase, N-terminal YPZ3_0769 IPR028082 Periplasmic binding protein-like I YPZ3_0769 IPR025997 Periplasmic binding protein YPZ3_0770 IPR003593 AAA+ ATPase domain YPZ3_0770 IPR015861 ABC transporter, ribose import, RbsA YPZ3_0770 IPR017871 ABC transporter, conserved site YPZ3_0770 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0770 IPR003439 ABC transporter-like YPZ3_0771 IPR001851 ABC transporter, permease YPZ3_0772 IPR039423 TonB-dependent receptor-like YPZ3_0772 IPR012910 TonB-dependent receptor, plug domain YPZ3_0772 IPR037066 TonB-dependent receptor, plug domain superfamily YPZ3_0774 IPR008258 Transglycosylase SLT domain 1 YPZ3_0774 IPR000189 Prokaryotic transglycosylase, active site YPZ3_0774 IPR024570 Murein transglycosylase-C, N-terminal YPZ3_0774 IPR023664 Murein transglycosylase-C YPZ3_0774 IPR023346 Lysozyme-like domain superfamily YPZ3_0775 IPR005760 A/G-specific adenine glycosylase MutY YPZ3_0775 IPR004036 Endonuclease III-like, conserved site-2 YPZ3_0775 IPR011257 DNA glycosylase YPZ3_0775 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif YPZ3_0775 IPR003265 HhH-GPD domain YPZ3_0775 IPR004035 Endonuclease III, iron-sulphur binding site YPZ3_0775 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal YPZ3_0775 IPR015797 NUDIX hydrolase-like domain superfamily YPZ3_0775 IPR029119 MutY, C-terminal YPZ3_0775 IPR000445 Helix-hairpin-helix motif YPZ3_0776 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_0776 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type YPZ3_0777 IPR007416 Protein of unknown function DUF469 YPZ3_0778 IPR015868 Glutaminase YPZ3_0778 IPR012338 Beta-lactamase/transpeptidase-like YPZ3_0779 IPR021307 Protein of unknown function DUF2884 YPZ3_0780 IPR038383 CGT/MARTX, cysteine protease (CPD) domain superfamily YPZ3_0780 IPR020974 CGT/MARTX, cysteine protease (CPD) domain YPZ3_0780 IPR011509 RtxA toxin YPZ3_0780 IPR022742 Serine aminopeptidase, S33 YPZ3_0780 IPR011049 Serralysin-like metalloprotease, C-terminal YPZ3_0780 IPR020972 Dermonecrotic/RTX toxin, membrane localization domain YPZ3_0780 IPR029058 Alpha/Beta hydrolase fold YPZ3_0780 IPR032074 Actin cross-linking domain YPZ3_0781 IPR004559 Heme chaperone HemW-like YPZ3_0781 IPR010723 HemN, C-terminal YPZ3_0781 IPR006638 Elp3/MiaB/NifB YPZ3_0781 IPR034505 Anaerobic coproporphyrinogen-III oxidase YPZ3_0781 IPR007197 Radical SAM YPZ3_0781 IPR023404 Radical SAM, alpha/beta horseshoe YPZ3_0782 IPR029001 Inosine triphosphate pyrophosphatase-like YPZ3_0782 IPR002637 Ham1-like protein YPZ3_0782 IPR020922 dITP/XTP pyrophosphatase YPZ3_0783 IPR036591 YggU-like superfamily YPZ3_0783 IPR003746 Protein of unknown function DUF167 YPZ3_0783 IPR005228 Conserved hypothetical protein CHP00251 YPZ3_0784 IPR003425 CCB3/YggT YPZ3_0785 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPZ3_0785 IPR036291 NAD(P)-binding domain superfamily YPZ3_0785 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal YPZ3_0785 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain YPZ3_0785 IPR000304 Pyrroline-5-carboxylate reductase YPZ3_0786 IPR001608 Alanine racemase, N-terminal YPZ3_0786 IPR011078 Pyridoxal phosphate homeostasis protein YPZ3_0786 IPR029066 PLP-binding barrel YPZ3_0787 IPR001482 Type II/IV secretion system protein YPZ3_0787 IPR006321 Pilus retraction protein PilT YPZ3_0787 IPR003593 AAA+ ATPase domain YPZ3_0787 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0788 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type YPZ3_0788 IPR017754 Agmatine deiminase YPZ3_0789 IPR023719 Aliphatic amidase YPZ3_0789 IPR036526 Carbon-nitrogen hydrolase superfamily YPZ3_0789 IPR003010 Carbon-nitrogen hydrolase YPZ3_0790 IPR005227 Putative pre-16S rRNA nuclease YPZ3_0790 IPR006641 YqgF/RNase H-like domain YPZ3_0790 IPR037027 YqgF/RNase H-like domain superfamily YPZ3_0790 IPR012337 Ribonuclease H-like superfamily YPZ3_0791 IPR003774 Protein of unknown function UPF0301 YPZ3_0792 IPR006284 Glutathione synthetase, prokaryotic YPZ3_0792 IPR004215 Prokaryotic glutathione synthetase, N-terminal YPZ3_0792 IPR016185 Pre-ATP-grasp domain superfamily YPZ3_0792 IPR004218 Prokaryotic glutathione synthetase, ATP-binding YPZ3_0792 IPR013815 ATP-grasp fold, subdomain 1 YPZ3_0792 IPR011761 ATP-grasp fold YPZ3_0793 IPR029028 Alpha/beta knot methyltransferases YPZ3_0793 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPZ3_0793 IPR015947 PUA-like superfamily YPZ3_0793 IPR006700 Ribosomal RNA small subunit methyltransferase E YPZ3_0794 IPR007346 Endonuclease I YPZ3_0795 IPR023483 Uncharacterised protein family SprT YPZ3_0795 IPR006640 SprT-like YPZ3_0795 IPR035240 SprT-like, zinc ribbon domain YPZ3_0796 IPR022630 S-adenosylmethionine synthetase, C-terminal YPZ3_0796 IPR022629 S-adenosylmethionine synthetase, central domain YPZ3_0796 IPR022628 S-adenosylmethionine synthetase, N-terminal YPZ3_0796 IPR002133 S-adenosylmethionine synthetase YPZ3_0796 IPR022636 S-adenosylmethionine synthetase superfamily YPZ3_0796 IPR022631 S-adenosylmethionine synthetase, conserved site YPZ3_0797 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPZ3_0797 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal YPZ3_0797 IPR040634 Arginine decarboxylase, helical bundle domain YPZ3_0797 IPR041128 Arginine decarboxylase, C-terminal helical YPZ3_0797 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YPZ3_0797 IPR029066 PLP-binding barrel YPZ3_0797 IPR002985 Arginine decarboxylase YPZ3_0797 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YPZ3_0797 IPR000183 Ornithine/DAP/Arg decarboxylase YPZ3_0799 IPR001915 Peptidase M48 YPZ3_0800 IPR005478 Transketolase, bacterial-like YPZ3_0800 IPR033247 Transketolase family YPZ3_0800 IPR020826 Transketolase binding site YPZ3_0800 IPR029061 Thiamin diphosphate-binding fold YPZ3_0800 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPZ3_0800 IPR005474 Transketolase, N-terminal YPZ3_0800 IPR005475 Transketolase-like, pyrimidine-binding domain YPZ3_0800 IPR033248 Transketolase, C-terminal domain YPZ3_0802 IPR006422 D-erythrose-4-phosphate dehydrogenase YPZ3_0802 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family YPZ3_0802 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site YPZ3_0802 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YPZ3_0802 IPR036291 NAD(P)-binding domain superfamily YPZ3_0802 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YPZ3_0803 IPR015824 Phosphoglycerate kinase, N-terminal YPZ3_0803 IPR036043 Phosphoglycerate kinase superfamily YPZ3_0803 IPR015911 Phosphoglycerate kinase, conserved site YPZ3_0803 IPR001576 Phosphoglycerate kinase YPZ3_0804 IPR000771 Fructose-bisphosphate aldolase, class-II YPZ3_0804 IPR013785 Aldolase-type TIM barrel YPZ3_0804 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype YPZ3_0805 IPR023408 Mechanosensitive ion channel MscS domain superfamily YPZ3_0805 IPR010920 LSM domain superfamily YPZ3_0805 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPZ3_0805 IPR006685 Mechanosensitive ion channel MscS YPZ3_0805 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPZ3_0805 IPR008910 Conserved TM helix YPZ3_0805 IPR006686 Mechanosensitive ion channel MscS, conserved site YPZ3_0806 IPR001123 Amino acid exporter protein, LeuE-type YPZ3_0806 IPR023445 Arginine exporter protein ArgO, enterobacteria YPZ3_0806 IPR004777 L-lysine exporter/arginine exporter YPZ3_0807 IPR007497 Protein of unknown function DUF541 YPZ3_0808 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0808 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0808 IPR005119 LysR, substrate-binding YPZ3_0808 IPR000847 Transcription regulator HTH, LysR YPZ3_0808 IPR017685 HTH-type transcriptional regulator ArgP YPZ3_0808 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria YPZ3_0809 IPR004788 Ribose 5-phosphate isomerase, type A YPZ3_0809 IPR037171 NagB/RpiA transferase-like YPZ3_0809 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup YPZ3_0810 IPR036291 NAD(P)-binding domain superfamily YPZ3_0810 IPR002912 ACT domain YPZ3_0810 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPZ3_0810 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPZ3_0810 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPZ3_0810 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_0811 IPR037171 NagB/RpiA transferase-like YPZ3_0811 IPR002698 5-formyltetrahydrofolate cyclo-ligase YPZ3_0811 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily YPZ3_0812 IPR007838 Cell division protein ZapA-like YPZ3_0812 IPR023771 Cell division protein ZapA, eubacteria YPZ3_0812 IPR036192 Cell division protein ZapA-like superfamily YPZ3_0813 IPR036255 YgfB-like superfamily YPZ3_0813 IPR011978 Uncharacterised protein family UPF0149 YPZ3_0814 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPZ3_0814 IPR001714 Peptidase M24, methionine aminopeptidase YPZ3_0814 IPR000994 Peptidase M24 YPZ3_0814 IPR036005 Creatinase/aminopeptidase-like YPZ3_0814 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPZ3_0814 IPR007865 Aminopeptidase P, N-terminal YPZ3_0815 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_0815 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YPZ3_0815 IPR002938 FAD-binding domain YPZ3_0815 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 YPZ3_0815 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase YPZ3_0816 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_0816 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YPZ3_0816 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 YPZ3_0816 IPR002938 FAD-binding domain YPZ3_0817 IPR006222 Aminomethyltransferase, folate-binding domain YPZ3_0817 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain YPZ3_0817 IPR028896 Aminomethyltransferase-like YPZ3_0817 IPR006223 Glycine cleavage system T protein YPZ3_0817 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal YPZ3_0817 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 YPZ3_0817 IPR022903 Glycine cleavage system T protein, bacteria YPZ3_0818 IPR000089 Biotin/lipoyl attachment YPZ3_0818 IPR011053 Single hybrid motif YPZ3_0818 IPR017453 Glycine cleavage system H-protein, subgroup YPZ3_0818 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPZ3_0818 IPR002930 Glycine cleavage system H-protein YPZ3_0818 IPR033753 Glycine cleavage system H-protein/Simiate YPZ3_0819 IPR020581 Glycine cleavage system P protein YPZ3_0819 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_0819 IPR003437 Glycine dehydrogenase (decarboxylating) YPZ3_0819 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_0819 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_0821 IPR008640 Head domain of trimeric autotransporter adhesin YPZ3_0821 IPR011049 Serralysin-like metalloprotease, C-terminal YPZ3_0821 IPR024973 ESPR domain YPZ3_0821 IPR005594 YadA-like, C-terminal YPZ3_0821 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPZ3_0823 IPR005744 Hly-III YPZ3_0823 IPR004254 AdipoR/Haemolysin-III-related YPZ3_0825 IPR006222 Aminomethyltransferase, folate-binding domain YPZ3_0825 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal YPZ3_0825 IPR023758 tRNA-modifying protein YgfZ YPZ3_0825 IPR017703 YgfZ/GcvT conserved site YPZ3_0826 IPR009883 Inner membrane protein YgfX YPZ3_0827 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0827 IPR039420 Transcriptional regulatory protein WalR-like YPZ3_0827 IPR001789 Signal transduction response regulator, receiver domain YPZ3_0827 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_0827 IPR011006 CheY-like superfamily YPZ3_0827 IPR001867 OmpR/PhoB-type DNA-binding domain YPZ3_0828 IPR003660 HAMP domain YPZ3_0828 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_0828 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_0828 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_0828 IPR029151 Periplasmic sensor-like domain superfamily YPZ3_0828 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_0828 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_0828 IPR005467 Histidine kinase domain YPZ3_0829 IPR010364 Uncharacterised protein family, inner membrane CreD YPZ3_0830 IPR001226 Flavodoxin, conserved site YPZ3_0830 IPR008254 Flavodoxin/nitric oxide synthase YPZ3_0830 IPR010086 Flavodoxin, long chain YPZ3_0830 IPR029039 Flavoprotein-like superfamily YPZ3_0831 IPR011932 Tyrosine recombinase XerD YPZ3_0831 IPR013762 Integrase-like, catalytic domain superfamily YPZ3_0831 IPR002104 Integrase, catalytic domain YPZ3_0831 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPZ3_0831 IPR023009 Tyrosine recombinase XerC/XerD YPZ3_0831 IPR004107 Integrase, SAM-like, N-terminal YPZ3_0831 IPR010998 Integrase/recombinase, N-terminal YPZ3_0832 IPR033954 Disulphide bond isomerase, DsbC/G YPZ3_0832 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal YPZ3_0832 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily YPZ3_0832 IPR036249 Thioredoxin-like superfamily YPZ3_0832 IPR017937 Thioredoxin, conserved site YPZ3_0832 IPR012336 Thioredoxin-like fold YPZ3_0832 IPR013766 Thioredoxin domain YPZ3_0833 IPR001667 DDH domain YPZ3_0833 IPR003156 DHHA1 domain YPZ3_0833 IPR041122 RecJ, OB domain YPZ3_0833 IPR004610 Bacterial RecJ exonuclease YPZ3_0833 IPR038763 DHH phosphoesterase superfamily YPZ3_0834 IPR005139 Peptide chain release factor YPZ3_0834 IPR000352 Peptide chain release factor class I YPZ3_0834 IPR004374 Peptide chain release factor 2 YPZ3_0835 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal YPZ3_0835 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPZ3_0835 IPR006195 Aminoacyl-tRNA synthetase, class II YPZ3_0835 IPR002313 Lysine-tRNA ligase, class II YPZ3_0835 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II YPZ3_0835 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPZ3_0835 IPR012340 Nucleic acid-binding, OB-fold YPZ3_0836 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPZ3_0836 IPR013762 Integrase-like, catalytic domain superfamily YPZ3_0836 IPR002104 Integrase, catalytic domain YPZ3_0836 IPR004107 Integrase, SAM-like, N-terminal YPZ3_0836 IPR010998 Integrase/recombinase, N-terminal YPZ3_0836 IPR038488 Integrase, DNA-binding domain superfamily YPZ3_0836 IPR025166 Integrase, DNA-binding domain YPZ3_0838 IPR032758 Antitoxin MqsA/HigA-2 YPZ3_0838 IPR001387 Cro/C1-type helix-turn-helix domain YPZ3_0838 IPR022453 Zinc finger, MqsA-type YPZ3_0838 IPR022452 Antitoxin MqsA YPZ3_0838 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_0850 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0850 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0850 IPR005149 Transcription regulator PadR, N-terminal YPZ3_0851 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPZ3_0851 IPR038765 Papain-like cysteine peptidase superfamily YPZ3_0853 IPR025997 Periplasmic binding protein YPZ3_0853 IPR028082 Periplasmic binding protein-like I YPZ3_0854 IPR001851 ABC transporter, permease YPZ3_0855 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0855 IPR003439 ABC transporter-like YPZ3_0855 IPR003593 AAA+ ATPase domain YPZ3_0855 IPR015861 ABC transporter, ribose import, RbsA YPZ3_0855 IPR017871 ABC transporter, conserved site YPZ3_0856 IPR003593 AAA+ ATPase domain YPZ3_0856 IPR003439 ABC transporter-like YPZ3_0856 IPR017871 ABC transporter, conserved site YPZ3_0856 IPR040582 MalK, OB fold domain YPZ3_0856 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_0856 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0857 IPR006059 Bacterial extracellular solute-binding protein YPZ3_0857 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein YPZ3_0858 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_0858 IPR035906 MetI-like superfamily YPZ3_0859 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_0859 IPR035906 MetI-like superfamily YPZ3_0860 IPR017853 Glycoside hydrolase superfamily YPZ3_0860 IPR011683 Glycosyl hydrolase family 53 YPZ3_0861 IPR013780 Glycosyl hydrolase, all-beta YPZ3_0861 IPR013739 Beta-galactosidase C-terminal YPZ3_0861 IPR013738 Beta-galactosidase trimerisation YPZ3_0861 IPR017853 Glycoside hydrolase superfamily YPZ3_0861 IPR013529 Glycoside hydrolase, family 42, N-terminal YPZ3_0861 IPR029062 Class I glutamine amidotransferase-like YPZ3_0861 IPR003476 Glycoside hydrolase, family 42 YPZ3_0862 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPZ3_0862 IPR011299 PTS system glucose-specific IIBC component YPZ3_0862 IPR001996 Phosphotransferase system, IIB component, type 1 YPZ3_0862 IPR013013 Phosphotransferase system, EIIC component, type 1 YPZ3_0862 IPR036878 Glucose permease domain IIB YPZ3_0862 IPR003352 Phosphotransferase system, EIIC YPZ3_0863 IPR003192 Porin, LamB-type YPZ3_0863 IPR036998 Porin, LamB-type superfamily YPZ3_0863 IPR023738 Maltoporin YPZ3_0864 IPR000843 LacI-type HTH domain YPZ3_0864 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_0864 IPR028082 Periplasmic binding protein-like I YPZ3_0865 IPR017853 Glycoside hydrolase superfamily YPZ3_0865 IPR032513 Alpha-glucosidase, domain of unknown function DUF4968 YPZ3_0865 IPR013780 Glycosyl hydrolase, all-beta YPZ3_0865 IPR033403 Domain of unknown function DUF5110 YPZ3_0865 IPR011013 Galactose mutarotase-like domain superfamily YPZ3_0865 IPR030458 Glycosyl hydrolases family 31, active site YPZ3_0865 IPR030459 Glycosyl hydrolases family 31, conserved site YPZ3_0865 IPR025887 Glycoside hydrolase family 31, N-terminal domain YPZ3_0865 IPR000322 Glycoside hydrolase family 31 YPZ3_0866 IPR011701 Major facilitator superfamily YPZ3_0866 IPR020846 Major facilitator superfamily domain YPZ3_0866 IPR036259 MFS transporter superfamily YPZ3_0867 IPR000843 LacI-type HTH domain YPZ3_0867 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_0867 IPR028082 Periplasmic binding protein-like I YPZ3_0867 IPR023588 Transcription regulator HTH, PurR YPZ3_0869 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY YPZ3_0869 IPR000771 Fructose-bisphosphate aldolase, class-II YPZ3_0869 IPR023955 D-tagatose-bisphosphate aldolase, class II, subunit GatY YPZ3_0869 IPR013785 Aldolase-type TIM barrel YPZ3_0871 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPZ3_0871 IPR024607 Sulfatase, conserved site YPZ3_0871 IPR000917 Sulfatase, N-terminal YPZ3_0872 IPR007197 Radical SAM YPZ3_0872 IPR013785 Aldolase-type TIM barrel YPZ3_0872 IPR023885 4Fe4S-binding SPASM domain YPZ3_0872 IPR034491 Anaerobic Ser-type sulfatase-maturating enzyme YPZ3_0874 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase YPZ3_0874 IPR036291 NAD(P)-binding domain superfamily YPZ3_0874 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPZ3_0874 IPR002347 Short-chain dehydrogenase/reductase SDR YPZ3_0875 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPZ3_0875 IPR003764 N-acetylglucosamine-6-phosphate deacetylase YPZ3_0875 IPR006680 Amidohydrolase-related YPZ3_0875 IPR032466 Metal-dependent hydrolase YPZ3_0876 IPR033887 PTS system mannose/sorbose specific IIA subunit YPZ3_0876 IPR004701 Phosphotransferase system, mannose-type IIA component YPZ3_0876 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily YPZ3_0877 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component YPZ3_0878 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit YPZ3_0879 IPR004720 Phosphotransferase system, sorbose subfamily IIB component YPZ3_0879 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup YPZ3_0879 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily YPZ3_0880 IPR035464 AgaS, SIS domain YPZ3_0880 IPR014180 Sugar isomerase, AgaS YPZ3_0880 IPR035466 GlmS/AgaS, SIS domain 1 YPZ3_0880 IPR001347 Sugar isomerase (SIS) YPZ3_0881 IPR023435 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit KbaZ YPZ3_0881 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ-like YPZ3_0881 IPR013785 Aldolase-type TIM barrel YPZ3_0882 IPR001034 DeoR-type HTH domain YPZ3_0882 IPR037171 NagB/RpiA transferase-like YPZ3_0882 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPZ3_0882 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0882 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0882 IPR014036 DeoR C-terminal sensor domain YPZ3_0883 IPR000917 Sulfatase, N-terminal YPZ3_0883 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPZ3_0884 IPR002686 Transposase IS200-like YPZ3_0884 IPR036515 Transposase IS200-like superfamily YPZ3_0885 IPR036397 Ribonuclease H superfamily YPZ3_0885 IPR012337 Ribonuclease H-like superfamily YPZ3_0885 IPR006120 Resolvase, HTH domain YPZ3_0885 IPR001584 Integrase, catalytic core YPZ3_0885 IPR017894 HTH domain, IS21 transposase-type YPZ3_0886 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0886 IPR002611 IstB-like ATP-binding protein YPZ3_0886 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_0886 IPR001270 ClpA/B family YPZ3_0886 IPR003593 AAA+ ATPase domain YPZ3_0887 IPR011013 Galactose mutarotase-like domain superfamily YPZ3_0887 IPR039174 Chondroitin sulfate ABC lyase YPZ3_0887 IPR008929 Chondroitin AC/alginate lyase YPZ3_0887 IPR024200 Chondroitin sulfate ABC endolyase YPZ3_0887 IPR008979 Galactose-binding-like domain superfamily YPZ3_0887 IPR015176 Lyase, N-terminal YPZ3_0887 IPR015177 Lyase, catalytic YPZ3_0887 IPR003159 Polysaccharide lyase family 8, central domain YPZ3_0887 IPR011071 Polysaccharide lyase family 8-like, C-terminal YPZ3_0887 IPR004103 Polysaccharide lyase family 8, C-terminal YPZ3_0887 IPR014718 Glycoside hydrolase-type carbohydrate-binding YPZ3_0890 IPR036874 Carbonic anhydrase superfamily YPZ3_0890 IPR001765 Carbonic anhydrase YPZ3_0890 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site YPZ3_0893 IPR038591 NolW-like superfamily YPZ3_0893 IPR001775 GspD/PilQ family YPZ3_0893 IPR005644 NolW-like YPZ3_0893 IPR013356 Type II secretion system GspD YPZ3_0893 IPR004845 Type II secretion system GspD, conserved site YPZ3_0893 IPR004846 Type II/III secretion system YPZ3_0895 IPR018076 Type II secretion system F domain YPZ3_0895 IPR011850 General secretion pathway protein F YPZ3_0895 IPR001992 Type II secretion system conserved site YPZ3_0895 IPR042094 Type II secretion system F domain superfamily YPZ3_0895 IPR003004 GspF/PilC family YPZ3_0896 IPR010054 General secretion pathway protein G YPZ3_0896 IPR012902 Prokaryotic N-terminal methylation site YPZ3_0896 IPR000983 Bacterial general secretion pathway protein G-type pilin YPZ3_0896 IPR013545 Type II secretion system protein G YPZ3_0900 IPR010627 Peptidase A24A, N-terminal YPZ3_0900 IPR014032 Peptidase A24A, prepilin type IV, bacterial YPZ3_0900 IPR000045 Prepilin type IV endopeptidase, peptidase domain YPZ3_0903 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_0903 IPR003660 HAMP domain YPZ3_0903 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPZ3_0903 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPZ3_0903 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPZ3_0903 IPR004090 Chemotaxis methyl-accepting receptor YPZ3_0906 IPR005119 LysR, substrate-binding YPZ3_0906 IPR000847 Transcription regulator HTH, LysR YPZ3_0906 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0906 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0907 IPR036259 MFS transporter superfamily YPZ3_0907 IPR011701 Major facilitator superfamily YPZ3_0907 IPR020846 Major facilitator superfamily domain YPZ3_0908 IPR005119 LysR, substrate-binding YPZ3_0908 IPR037414 Transcriptional activator protein LysR, PBP2 domain YPZ3_0908 IPR000847 Transcription regulator HTH, LysR YPZ3_0908 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0908 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0909 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal YPZ3_0909 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YPZ3_0909 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal YPZ3_0909 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YPZ3_0909 IPR000183 Ornithine/DAP/Arg decarboxylase YPZ3_0909 IPR029066 PLP-binding barrel YPZ3_0909 IPR002986 Diaminopimelate decarboxylase, LysA YPZ3_0909 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPZ3_0910 IPR000843 LacI-type HTH domain YPZ3_0910 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_0910 IPR028082 Periplasmic binding protein-like I YPZ3_0911 IPR006657 Molybdopterin dinucleotide-binding domain YPZ3_0911 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPZ3_0911 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase YPZ3_0911 IPR006656 Molybdopterin oxidoreductase YPZ3_0911 IPR009010 Aspartate decarboxylase-like domain superfamily YPZ3_0912 IPR023775 Bifunctional protein Aas YPZ3_0912 IPR002123 Phospholipid/glycerol acyltransferase YPZ3_0912 IPR042099 AMP-dependent synthetase-like superfamily YPZ3_0912 IPR000873 AMP-dependent synthetase/ligase YPZ3_0912 IPR020845 AMP-binding, conserved site YPZ3_0912 IPR025110 AMP-binding enzyme, C-terminal domain YPZ3_0913 IPR023727 Lysophospholipid transporter LplT YPZ3_0913 IPR011701 Major facilitator superfamily YPZ3_0913 IPR036259 MFS transporter superfamily YPZ3_0914 IPR036812 NADP-dependent oxidoreductase domain superfamily YPZ3_0914 IPR023210 NADP-dependent oxidoreductase domain YPZ3_0914 IPR020471 Aldo/keto reductase YPZ3_0915 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II YPZ3_0915 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily YPZ3_0915 IPR004230 DNA mismatch repair protein MutH YPZ3_0915 IPR011335 Restriction endonuclease type II-like YPZ3_0916 IPR000086 NUDIX hydrolase domain YPZ3_0916 IPR020084 NUDIX hydrolase, conserved site YPZ3_0916 IPR015797 NUDIX hydrolase-like domain superfamily YPZ3_0916 IPR022927 RNA pyrophosphohydrolase RppH YPZ3_0916 IPR020476 NUDIX hydrolase YPZ3_0917 IPR008279 PEP-utilising enzyme, mobile domain YPZ3_0917 IPR018274 PEP-utilising enzyme, active site YPZ3_0917 IPR003018 GAF domain YPZ3_0917 IPR000121 PEP-utilising enzyme, C-terminal YPZ3_0917 IPR029016 GAF-like domain superfamily YPZ3_0917 IPR040442 Pyruvate kinase-like domain superfamily YPZ3_0917 IPR023151 PEP-utilising enzyme, conserved site YPZ3_0917 IPR036637 Phosphohistidine domain superfamily YPZ3_0917 IPR006318 Phosphotransferase system, enzyme I-like YPZ3_0917 IPR008731 Phosphotransferase system, enzyme I N-terminal YPZ3_0917 IPR036618 PtsI, HPr-binding domain superfamily YPZ3_0917 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPZ3_0918 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt YPZ3_0919 IPR020940 Thymidylate synthase, active site YPZ3_0919 IPR000398 Thymidylate synthase YPZ3_0919 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain YPZ3_0919 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily YPZ3_0920 IPR017894 HTH domain, IS21 transposase-type YPZ3_0920 IPR001584 Integrase, catalytic core YPZ3_0920 IPR006120 Resolvase, HTH domain YPZ3_0920 IPR012337 Ribonuclease H-like superfamily YPZ3_0920 IPR036397 Ribonuclease H superfamily YPZ3_0921 IPR001584 Integrase, catalytic core YPZ3_0921 IPR036397 Ribonuclease H superfamily YPZ3_0921 IPR012337 Ribonuclease H-like superfamily YPZ3_0921 IPR017894 HTH domain, IS21 transposase-type YPZ3_0921 IPR006120 Resolvase, HTH domain YPZ3_0922 IPR003593 AAA+ ATPase domain YPZ3_0922 IPR001270 ClpA/B family YPZ3_0922 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0922 IPR002611 IstB-like ATP-binding protein YPZ3_0922 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_0926 IPR013986 DExx box DNA helicase domain superfamily YPZ3_0926 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0926 IPR006697 RecBCD enzyme subunit RecC YPZ3_0926 IPR041500 RecC, C-terminal YPZ3_0926 IPR011335 Restriction endonuclease type II-like YPZ3_0927 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPZ3_0927 IPR011765 Peptidase M16, N-terminal YPZ3_0927 IPR001431 Peptidase M16, zinc-binding site YPZ3_0927 IPR007863 Peptidase M16, C-terminal YPZ3_0927 IPR032632 Peptidase M16, middle/third domain YPZ3_0928 IPR014016 UvrD-like helicase, ATP-binding domain YPZ3_0928 IPR014017 UvrD-like DNA helicase, C-terminal YPZ3_0928 IPR000212 DNA helicase, UvrD/REP type YPZ3_0928 IPR034739 UvrD/AddA helicase, N-terminal YPZ3_0928 IPR011604 Exonuclease, phage-type/RecB, C-terminal YPZ3_0928 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0928 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type YPZ3_0928 IPR004586 RecBCD enzyme subunit RecB YPZ3_0928 IPR011335 Restriction endonuclease type II-like YPZ3_0929 IPR041851 RecBCD enzyme subunit RecD, N-terminal domain YPZ3_0929 IPR003593 AAA+ ATPase domain YPZ3_0929 IPR027785 UvrD-like helicase C-terminal domain YPZ3_0929 IPR006344 RecBCD enzyme subunit RecD YPZ3_0929 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0930 IPR036393 Acetylglutamate kinase-like superfamily YPZ3_0930 IPR016181 Acyl-CoA N-acyltransferase YPZ3_0930 IPR010167 Amino-acid N-acetyltransferase YPZ3_0930 IPR033719 N-acetylglutamate synthase, kinase-like domain YPZ3_0930 IPR001048 Aspartate/glutamate/uridylate kinase YPZ3_0930 IPR000182 GNAT domain YPZ3_0931 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain YPZ3_0931 IPR006311 Twin-arginine translocation pathway, signal sequence YPZ3_0931 IPR021731 AMIN domain YPZ3_0932 IPR026044 Membrane-bound lytic murein transglycosylase A YPZ3_0932 IPR010611 3D domain YPZ3_0932 IPR034654 MltA, 3D domain YPZ3_0932 IPR036908 RlpA-like domain superfamily YPZ3_0932 IPR005300 Lytic transglycosylase MltA, domain B YPZ3_0933 IPR000594 THIF-type NAD/FAD binding fold YPZ3_0933 IPR035985 Ubiquitin-activating enzyme YPZ3_0934 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE YPZ3_0934 IPR003808 Fe-S metabolism associated domain, SufE-like YPZ3_0935 IPR000192 Aminotransferase class V domain YPZ3_0935 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPZ3_0935 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA YPZ3_0935 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_0935 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_0935 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_0936 IPR005119 LysR, substrate-binding YPZ3_0936 IPR000847 Transcription regulator HTH, LysR YPZ3_0936 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_0936 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_0937 IPR006696 Protein of unknown function DUF423 YPZ3_0938 IPR011224 Ribosomal RNA large subunit methyltransferase M YPZ3_0938 IPR002877 Ribosomal RNA methyltransferase FtsJ domain YPZ3_0938 IPR040739 RlmM ferredoxin-like domain YPZ3_0938 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_0939 IPR022895 Flap endonuclease Xni YPZ3_0939 IPR029060 PIN-like domain superfamily YPZ3_0939 IPR008918 Helix-hairpin-helix motif, class 2 YPZ3_0939 IPR020045 DNA polymerase I-like, H3TH domain YPZ3_0939 IPR038969 Flap endonuclease YPZ3_0939 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPZ3_0939 IPR002421 5'-3' exonuclease, N-terminal YPZ3_0939 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPZ3_0940 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal YPZ3_0940 IPR021826 Domain of unknown function DUF3412 YPZ3_0940 IPR031100 LOG family YPZ3_0940 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily YPZ3_0941 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF YPZ3_0941 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal YPZ3_0941 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 YPZ3_0942 IPR009948 Syd YPZ3_0942 IPR038228 Syd superfamily YPZ3_0943 IPR002686 Transposase IS200-like YPZ3_0943 IPR036515 Transposase IS200-like superfamily YPZ3_0944 IPR023376 YqcC-like domain YPZ3_0944 IPR036814 YqcC-like superfamily YPZ3_0944 IPR007384 Protein of unknown function UCP006257 YPZ3_0945 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPZ3_0945 IPR006145 Pseudouridine synthase, RsuA/RluA YPZ3_0945 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPZ3_0946 IPR008254 Flavodoxin/nitric oxide synthase YPZ3_0946 IPR029039 Flavoprotein-like superfamily YPZ3_0946 IPR001094 Flavodoxin-like YPZ3_0947 IPR020911 Uncharacterised protein family UPF0325 YPZ3_0948 IPR018357 Hexapeptide transferase, conserved site YPZ3_0948 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family YPZ3_0948 IPR001451 Hexapeptide repeat YPZ3_0948 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 YPZ3_0948 IPR011004 Trimeric LpxA-like superfamily YPZ3_0948 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily YPZ3_0949 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme YPZ3_0949 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YPZ3_0949 IPR006674 HD domain YPZ3_0949 IPR003607 HD/PDEase domain YPZ3_0949 IPR002912 ACT domain YPZ3_0949 IPR002934 Polymerase, nucleotidyl transferase domain YPZ3_0950 IPR001714 Peptidase M24, methionine aminopeptidase YPZ3_0950 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 YPZ3_0950 IPR000994 Peptidase M24 YPZ3_0950 IPR036005 Creatinase/aminopeptidase-like YPZ3_0951 IPR018130 Ribosomal protein S2, conserved site YPZ3_0951 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid YPZ3_0951 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily YPZ3_0951 IPR001865 Ribosomal protein S2 YPZ3_0952 IPR036402 Elongation factor Ts, dimerisation domain superfamily YPZ3_0952 IPR001816 Translation elongation factor EFTs/EF1B YPZ3_0952 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation YPZ3_0952 IPR018101 Translation elongation factor Ts, conserved site YPZ3_0952 IPR009060 UBA-like superfamily YPZ3_0953 IPR036393 Acetylglutamate kinase-like superfamily YPZ3_0953 IPR001048 Aspartate/glutamate/uridylate kinase YPZ3_0953 IPR011817 Uridylate kinase YPZ3_0953 IPR015963 Uridylate kinase, bacteria YPZ3_0954 IPR023584 Ribosome recycling factor domain YPZ3_0954 IPR036191 RRF superfamily YPZ3_0954 IPR002661 Ribosome recycling factor YPZ3_0955 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPZ3_0955 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal YPZ3_0955 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal YPZ3_0955 IPR026877 DXP reductoisomerase C-terminal domain YPZ3_0955 IPR036291 NAD(P)-binding domain superfamily YPZ3_0955 IPR036169 DXP reductoisomerase, C-terminal domain superfamily YPZ3_0956 IPR036424 Decaprenyl diphosphate synthase-like superfamily YPZ3_0956 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site YPZ3_0956 IPR001441 Decaprenyl diphosphate synthase-like YPZ3_0957 IPR000374 Phosphatidate cytidylyltransferase YPZ3_0958 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase YPZ3_0958 IPR008915 Peptidase M50 YPZ3_0958 IPR036034 PDZ superfamily YPZ3_0958 IPR041489 PDZ domain 6 YPZ3_0958 IPR001478 PDZ domain YPZ3_0959 IPR039910 Surface antigen D15-like YPZ3_0959 IPR010827 POTRA domain, BamA/TamA-like YPZ3_0959 IPR034746 POTRA domain YPZ3_0959 IPR023707 Outer membrane protein assembly factor BamA YPZ3_0959 IPR000184 Bacterial surface antigen (D15) YPZ3_0960 IPR005632 Chaperone protein Skp YPZ3_0960 IPR024930 Skp domain superfamily YPZ3_0961 IPR001451 Hexapeptide repeat YPZ3_0961 IPR018357 Hexapeptide transferase, conserved site YPZ3_0961 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD YPZ3_0961 IPR011004 Trimeric LpxA-like superfamily YPZ3_0961 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region YPZ3_0962 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YPZ3_0962 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPZ3_0962 IPR029069 HotDog domain superfamily YPZ3_0963 IPR018357 Hexapeptide transferase, conserved site YPZ3_0963 IPR001451 Hexapeptide repeat YPZ3_0963 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily YPZ3_0963 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase YPZ3_0963 IPR011004 Trimeric LpxA-like superfamily YPZ3_0963 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal YPZ3_0964 IPR003835 Glycosyl transferase, family 19 YPZ3_0965 IPR022898 Ribonuclease HII YPZ3_0965 IPR036397 Ribonuclease H superfamily YPZ3_0965 IPR012337 Ribonuclease H-like superfamily YPZ3_0965 IPR024567 Ribonuclease HII/HIII domain YPZ3_0965 IPR001352 Ribonuclease HII/HIII YPZ3_0966 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain YPZ3_0966 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain YPZ3_0966 IPR040982 DNA polymerase III alpha subunit finger domain YPZ3_0966 IPR029460 DNA polymerase, helix-hairpin-helix motif YPZ3_0966 IPR004805 DNA polymerase III, alpha subunit YPZ3_0966 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPZ3_0966 IPR016195 Polymerase/histidinol phosphatase-like YPZ3_0966 IPR004013 PHP domain YPZ3_0966 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPZ3_0967 IPR029045 ClpP/crotonase-like domain superfamily YPZ3_0967 IPR001095 Acetyl-CoA carboxylase, alpha subunit YPZ3_0967 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal YPZ3_0968 IPR037478 YwkD-like domain YPZ3_0968 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YPZ3_0968 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPZ3_0968 IPR037523 Vicinal oxygen chelate (VOC) domain YPZ3_0969 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal YPZ3_0969 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal YPZ3_0969 IPR012094 tRNA(Ile)-lysidine synthase YPZ3_0969 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal YPZ3_0969 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain YPZ3_0969 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_0970 IPR008168 Cytochrome c, class IC YPZ3_0970 IPR009056 Cytochrome c-like domain YPZ3_0970 IPR036909 Cytochrome c-like domain superfamily YPZ3_0971 IPR009822 YaeQ YPZ3_0971 IPR011335 Restriction endonuclease type II-like YPZ3_0971 IPR038590 YaeQ superfamily YPZ3_0972 IPR000352 Peptide chain release factor class I YPZ3_0973 IPR033450 NlpE, C-terminal OB domain YPZ3_0973 IPR038139 NlpE, C-terminal domain superfamily YPZ3_0973 IPR007298 Copper resistance lipoprotein NlpE YPZ3_0974 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily YPZ3_0974 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 YPZ3_0974 IPR033730 Prokaryote proline-tRNA ligase core domain YPZ3_0974 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type YPZ3_0974 IPR002316 Proline-tRNA ligase, class IIa YPZ3_0974 IPR036621 Anticodon-binding domain superfamily YPZ3_0974 IPR004154 Anticodon-binding YPZ3_0974 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain YPZ3_0974 IPR006195 Aminoacyl-tRNA synthetase, class II YPZ3_0974 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) YPZ3_0975 IPR023370 TrmO-like, N-terminal domain YPZ3_0975 IPR036414 YaeB, N-terminal domain superfamily YPZ3_0975 IPR036413 YaeB-like superfamily YPZ3_0975 IPR040372 YaeB-like YPZ3_0975 IPR041369 TrmO, C-terminal YPZ3_0975 IPR023368 Uncharacterised protein family UPF0066, conserved site YPZ3_0976 IPR030852 Outer membrane lipoprotein RcsF YPZ3_0977 IPR004872 Lipoprotein NlpA family YPZ3_0978 IPR035906 MetI-like superfamily YPZ3_0978 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_0979 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal YPZ3_0979 IPR018449 NIL domain YPZ3_0979 IPR017871 ABC transporter, conserved site YPZ3_0979 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0979 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain YPZ3_0979 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria YPZ3_0979 IPR026253 Methionine import ATP-binding protein MetN YPZ3_0979 IPR003593 AAA+ ATPase domain YPZ3_0979 IPR003439 ABC transporter-like YPZ3_0980 IPR006543 Histidinol-phosphate phosphatase YPZ3_0980 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase YPZ3_0980 IPR006549 HAD-superfamily hydrolase,subfamily IIIA YPZ3_0980 IPR023214 HAD superfamily YPZ3_0980 IPR036412 HAD-like superfamily YPZ3_0981 IPR036812 NADP-dependent oxidoreductase domain superfamily YPZ3_0981 IPR020471 Aldo/keto reductase YPZ3_0981 IPR018170 Aldo/keto reductase, conserved site YPZ3_0981 IPR023210 NADP-dependent oxidoreductase domain YPZ3_0983 IPR022958 Uncharacterised protein family UPF0294 YPZ3_0983 IPR005135 Endonuclease/exonuclease/phosphatase YPZ3_0983 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YPZ3_0984 IPR023346 Lysozyme-like domain superfamily YPZ3_0984 IPR000189 Prokaryotic transglycosylase, active site YPZ3_0984 IPR008258 Transglycosylase SLT domain 1 YPZ3_0984 IPR018392 LysM domain YPZ3_0984 IPR036779 LysM domain superfamily YPZ3_0985 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain YPZ3_0985 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPZ3_0985 IPR001279 Metallo-beta-lactamase YPZ3_0985 IPR017782 Hydroxyacylglutathione hydrolase YPZ3_0985 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain YPZ3_0986 IPR026669 Arsenite methyltransferase-like YPZ3_0986 IPR013216 Methyltransferase type 11 YPZ3_0986 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_0987 IPR022892 Ribonuclease HI YPZ3_0987 IPR012337 Ribonuclease H-like superfamily YPZ3_0987 IPR002156 Ribonuclease H domain YPZ3_0987 IPR036397 Ribonuclease H superfamily YPZ3_0988 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain YPZ3_0988 IPR006309 DNA polymerase 3, epsilon subunit YPZ3_0988 IPR013520 Exonuclease, RNase T/DNA polymerase III YPZ3_0988 IPR012337 Ribonuclease H-like superfamily YPZ3_0988 IPR036397 Ribonuclease H superfamily YPZ3_0989 IPR038271 Purine-cytosine permease superfamily YPZ3_0989 IPR001248 Purine-cytosine permease YPZ3_0989 IPR012681 Nucleobase cation symporter-1, NCS1 YPZ3_0990 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0990 IPR002611 IstB-like ATP-binding protein YPZ3_0990 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_0990 IPR003593 AAA+ ATPase domain YPZ3_0990 IPR001270 ClpA/B family YPZ3_0991 IPR012337 Ribonuclease H-like superfamily YPZ3_0991 IPR006120 Resolvase, HTH domain YPZ3_0991 IPR001584 Integrase, catalytic core YPZ3_0991 IPR017894 HTH domain, IS21 transposase-type YPZ3_0991 IPR036397 Ribonuclease H superfamily YPZ3_0993 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_0993 IPR038724 Regulatory protein RepA YPZ3_0998 IPR013762 Integrase-like, catalytic domain superfamily YPZ3_0998 IPR038488 Integrase, DNA-binding domain superfamily YPZ3_0998 IPR025166 Integrase, DNA-binding domain YPZ3_0998 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPZ3_0998 IPR010998 Integrase/recombinase, N-terminal YPZ3_0998 IPR002104 Integrase, catalytic domain YPZ3_1000 IPR020081 SsrA-binding protein, conserved site YPZ3_1000 IPR000037 SsrA-binding protein YPZ3_1000 IPR023620 Small protein B YPZ3_1001 IPR005031 Coenzyme Q-binding protein COQ10, START domain YPZ3_1001 IPR023393 START-like domain superfamily YPZ3_1002 IPR007450 Lipoprotein SmpA/OmlA YPZ3_1002 IPR037873 BamE-like YPZ3_1002 IPR026592 Outer membrane protein assembly factor BamE YPZ3_1003 IPR004604 DNA recombination/repair protein RecN YPZ3_1003 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1003 IPR003395 RecF/RecN/SMC, N-terminal YPZ3_1004 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal YPZ3_1004 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal YPZ3_1004 IPR002504 NAD kinase YPZ3_1004 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily YPZ3_1005 IPR013805 GrpE nucleotide exchange factor, coiled-coil YPZ3_1005 IPR000740 GrpE nucleotide exchange factor YPZ3_1005 IPR009012 GrpE nucleotide exchange factor, head YPZ3_1006 IPR010953 Citrate synthase, type I YPZ3_1006 IPR036969 Citrate synthase superfamily YPZ3_1006 IPR024176 Citrate synthase, bacterial-type YPZ3_1006 IPR016143 Citrate synthase-like, small alpha subdomain YPZ3_1006 IPR019810 Citrate synthase active site YPZ3_1006 IPR002020 Citrate synthase YPZ3_1006 IPR016142 Citrate synthase-like, large alpha subdomain YPZ3_1007 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor YPZ3_1007 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YPZ3_1007 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit YPZ3_1008 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site YPZ3_1008 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily YPZ3_1008 IPR011281 Succinate dehydrogenase, flavoprotein subunit YPZ3_1008 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily YPZ3_1008 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPZ3_1008 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_1008 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YPZ3_1008 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YPZ3_1009 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal YPZ3_1009 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein YPZ3_1009 IPR009051 Alpha-helical ferredoxin YPZ3_1009 IPR036010 2Fe-2S ferredoxin-like superfamily YPZ3_1009 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPZ3_1009 IPR012675 Beta-grasp domain superfamily YPZ3_1009 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPZ3_1009 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_1010 IPR011603 2-oxoglutarate dehydrogenase E1 component YPZ3_1010 IPR001017 Dehydrogenase, E1 component YPZ3_1010 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal YPZ3_1010 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily YPZ3_1010 IPR029061 Thiamin diphosphate-binding fold YPZ3_1010 IPR005475 Transketolase-like, pyrimidine-binding domain YPZ3_1010 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain YPZ3_1011 IPR004167 Peripheral subunit-binding domain YPZ3_1011 IPR036625 E3-binding domain superfamily YPZ3_1011 IPR006255 Dihydrolipoamide succinyltransferase YPZ3_1011 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPZ3_1011 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain YPZ3_1011 IPR000089 Biotin/lipoyl attachment YPZ3_1011 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPZ3_1011 IPR011053 Single hybrid motif YPZ3_1012 IPR011761 ATP-grasp fold YPZ3_1012 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site YPZ3_1012 IPR005811 ATP-citrate lyase/succinyl-CoA ligase YPZ3_1012 IPR013815 ATP-grasp fold, subdomain 1 YPZ3_1012 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type YPZ3_1012 IPR016102 Succinyl-CoA synthetase-like YPZ3_1012 IPR005809 Succinate--CoA synthetase, beta subunit YPZ3_1013 IPR016102 Succinyl-CoA synthetase-like YPZ3_1013 IPR005811 ATP-citrate lyase/succinyl-CoA ligase YPZ3_1013 IPR005810 Succinyl-CoA ligase, alpha subunit YPZ3_1013 IPR003781 CoA-binding YPZ3_1013 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site YPZ3_1013 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site YPZ3_1013 IPR036291 NAD(P)-binding domain superfamily YPZ3_1014 IPR002585 Cytochrome ubiquinol oxidase subunit 1 YPZ3_1015 IPR003317 Cytochrome ubiquinol oxidase subunit 2 YPZ3_1016 IPR002898 MotA/TolQ/ExbB proton channel YPZ3_1016 IPR014163 Tol-Pal system, TolQ YPZ3_1017 IPR014168 Tol-Pal system protein TolR YPZ3_1017 IPR003400 Biopolymer transport protein ExbD/TolR YPZ3_1018 IPR014161 Tol-Pal system, TolA YPZ3_1018 IPR014161 Tol-Pal system, TolA YPZ3_1019 IPR036752 TolB, N-terminal domain superfamily YPZ3_1019 IPR007195 TolB, N-terminal YPZ3_1019 IPR014167 Tol-Pal system protein TolB YPZ3_1019 IPR011659 WD40-like Beta Propeller YPZ3_1019 IPR011042 Six-bladed beta-propeller, TolB-like YPZ3_1020 IPR006665 OmpA-like domain YPZ3_1020 IPR006664 Outer membrane protein, bacterial YPZ3_1020 IPR006690 Outer membrane protein, OmpA-like, conserved site YPZ3_1020 IPR036737 OmpA-like domain superfamily YPZ3_1020 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal YPZ3_1020 IPR039001 Peptidoglycan-associated lipoprotein YPZ3_1021 IPR013026 Tetratricopeptide repeat-containing domain YPZ3_1021 IPR034706 Cell division coordinator CpoB YPZ3_1021 IPR032519 YbgF, trimerisation domain YPZ3_1021 IPR019734 Tetratricopeptide repeat YPZ3_1021 IPR011990 Tetratricopeptide-like helical domain superfamily YPZ3_1021 IPR014162 Cell division coordinator CpoB, C-terminal YPZ3_1022 IPR023513 Quinolinate synthase A, type 1 YPZ3_1022 IPR036094 Quinolinate synthetase A superfamily YPZ3_1022 IPR003473 Quinolinate synthetase A YPZ3_1023 IPR006419 Nicotinamide mononucleotide transporter PnuC YPZ3_1024 IPR002524 Cation efflux protein YPZ3_1024 IPR036837 Cation efflux protein, cytoplasmic domain superfamily YPZ3_1024 IPR027469 Cation efflux transmembrane domain superfamily YPZ3_1024 IPR023500 Zinc transporter ZitB YPZ3_1025 IPR006219 DHAP synthase, class 1 YPZ3_1025 IPR006218 DAHP synthetase I/KDSA YPZ3_1025 IPR013785 Aldolase-type TIM barrel YPZ3_1026 IPR002611 IstB-like ATP-binding protein YPZ3_1026 IPR003593 AAA+ ATPase domain YPZ3_1026 IPR001270 ClpA/B family YPZ3_1026 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_1026 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1027 IPR001584 Integrase, catalytic core YPZ3_1027 IPR017894 HTH domain, IS21 transposase-type YPZ3_1027 IPR036397 Ribonuclease H superfamily YPZ3_1027 IPR012337 Ribonuclease H-like superfamily YPZ3_1027 IPR006120 Resolvase, HTH domain YPZ3_1028 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site YPZ3_1028 IPR013078 Histidine phosphatase superfamily, clade-1 YPZ3_1028 IPR005952 Phosphoglycerate mutase 1 YPZ3_1028 IPR029033 Histidine phosphatase superfamily YPZ3_1030 IPR015443 Aldose 1-epimerase YPZ3_1030 IPR014718 Glycoside hydrolase-type carbohydrate-binding YPZ3_1030 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase YPZ3_1030 IPR011013 Galactose mutarotase-like domain superfamily YPZ3_1030 IPR018052 Aldose 1-epimerase, conserved site YPZ3_1030 IPR013458 Aldose 1-epimerase, bacterial YPZ3_1031 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_1031 IPR006203 GHMP kinase, ATP-binding, conserved site YPZ3_1031 IPR006206 Mevalonate/galactokinase YPZ3_1031 IPR000705 Galactokinase YPZ3_1031 IPR022963 Galactokinase, bacterial YPZ3_1031 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPZ3_1031 IPR019539 Galactokinase galactose-binding domain YPZ3_1031 IPR006204 GHMP kinase N-terminal domain YPZ3_1031 IPR013750 GHMP kinase, C-terminal domain YPZ3_1031 IPR019741 Galactokinase, conserved site YPZ3_1031 IPR036554 GHMP kinase, C-terminal domain superfamily YPZ3_1032 IPR036265 HIT-like superfamily YPZ3_1032 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal YPZ3_1032 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal YPZ3_1032 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site YPZ3_1032 IPR001937 Galactose-1-phosphate uridyl transferase, class I YPZ3_1033 IPR016040 NAD(P)-binding domain YPZ3_1033 IPR036291 NAD(P)-binding domain superfamily YPZ3_1033 IPR005886 UDP-glucose 4-epimerase YPZ3_1035 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1035 IPR003439 ABC transporter-like YPZ3_1035 IPR003593 AAA+ ATPase domain YPZ3_1036 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1036 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_1036 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1036 IPR003725 Molybdenum-binding protein ModE, N-terminal YPZ3_1036 IPR016462 Molybdate-dependent transcriptional regulator ModE YPZ3_1036 IPR005116 Transport-associated OB, type 1 YPZ3_1036 IPR000847 Transcription regulator HTH, LysR YPZ3_1036 IPR004606 Molybdenum-pterin binding YPZ3_1037 IPR005950 Molybdate ABC transporter, substrate-binding protein YPZ3_1038 IPR011867 Molybdate ABC transporter, permease protein YPZ3_1038 IPR035906 MetI-like superfamily YPZ3_1038 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1039 IPR003593 AAA+ ATPase domain YPZ3_1039 IPR003439 ABC transporter-like YPZ3_1039 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_1039 IPR015852 ABC transporter, molybdenum import, ModC YPZ3_1039 IPR011868 Molybdate ABC transporter, ATP-binding protein YPZ3_1039 IPR004606 Molybdenum-pterin binding YPZ3_1039 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1039 IPR005116 Transport-associated OB, type 1 YPZ3_1039 IPR017871 ABC transporter, conserved site YPZ3_1040 IPR023214 HAD superfamily YPZ3_1040 IPR000150 Cof family YPZ3_1040 IPR036412 HAD-like superfamily YPZ3_1040 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPZ3_1041 IPR015943 WD40/YVTN repeat-like-containing domain superfamily YPZ3_1041 IPR011045 Nitrous oxide reductase, N-terminal YPZ3_1041 IPR022528 6-phosphogluconolactonase, YbhE-type YPZ3_1041 IPR019405 Lactonase, 7-bladed beta propeller YPZ3_1042 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA YPZ3_1042 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_1042 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_1042 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_1042 IPR005814 Aminotransferase class-III YPZ3_1043 IPR007197 Radical SAM YPZ3_1043 IPR006638 Elp3/MiaB/NifB YPZ3_1043 IPR024177 Biotin synthase YPZ3_1043 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB YPZ3_1043 IPR010722 Biotin and thiamin synthesis-associated domain YPZ3_1043 IPR013785 Aldolase-type TIM barrel YPZ3_1044 IPR004839 Aminotransferase, class I/classII YPZ3_1044 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPZ3_1044 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_1044 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_1044 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_1044 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria YPZ3_1044 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type YPZ3_1045 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC YPZ3_1045 IPR013216 Methyltransferase type 11 YPZ3_1045 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_1046 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1046 IPR004472 Dethiobiotin synthase BioD YPZ3_1048 IPR001943 UVR domain YPZ3_1048 IPR024759 UvrB, YAD/RRR-motif-containing domain YPZ3_1048 IPR041471 UvrB, interaction domain YPZ3_1048 IPR004807 UvrABC system, subunit B YPZ3_1048 IPR036876 UVR domain superfamily YPZ3_1048 IPR006935 Helicase/UvrB, N-terminal YPZ3_1048 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_1048 IPR001650 Helicase, C-terminal YPZ3_1048 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1049 IPR010119 Gluconeogenesis factor YPZ3_1049 IPR038136 Gluconeogenesis factor superfamily YPZ3_1049 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 YPZ3_1050 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site YPZ3_1050 IPR013785 Aldolase-type TIM barrel YPZ3_1050 IPR007197 Radical SAM YPZ3_1050 IPR013483 Molybdenum cofactor biosynthesis protein A YPZ3_1050 IPR010505 Molybdenum cofactor synthesis C-terminal YPZ3_1050 IPR006638 Elp3/MiaB/NifB YPZ3_1051 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily YPZ3_1051 IPR023045 Molybdenum cofactor biosynthesis C YPZ3_1051 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain YPZ3_1052 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily YPZ3_1052 IPR003448 Molybdopterin biosynthesis MoaE YPZ3_1053 IPR006214 Bax inhibitor 1-related YPZ3_1054 IPR002686 Transposase IS200-like YPZ3_1054 IPR036515 Transposase IS200-like superfamily YPZ3_1055 IPR027424 Glucose Oxidase, domain 2 YPZ3_1055 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal YPZ3_1055 IPR012132 Glucose-methanol-choline oxidoreductase YPZ3_1055 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal YPZ3_1055 IPR011533 Oxygen-dependent choline dehydrogenase YPZ3_1055 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_1056 IPR016160 Aldehyde dehydrogenase, cysteine active site YPZ3_1056 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPZ3_1056 IPR016162 Aldehyde dehydrogenase, N-terminal YPZ3_1056 IPR011264 Betaine aldehyde dehydrogenase YPZ3_1056 IPR015590 Aldehyde dehydrogenase domain YPZ3_1056 IPR016161 Aldehyde/histidinol dehydrogenase YPZ3_1056 IPR016163 Aldehyde dehydrogenase, C-terminal YPZ3_1057 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPZ3_1057 IPR039538 BetI-type transcriptional repressor, C-terminal YPZ3_1057 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPZ3_1057 IPR009057 Homeobox-like domain superfamily YPZ3_1057 IPR001647 DNA-binding HTH domain, TetR-type YPZ3_1057 IPR017757 Transcriptional repressor BetI YPZ3_1058 IPR000060 BCCT transporter family YPZ3_1058 IPR018093 BCCT transporter, conserved site YPZ3_1059 IPR005119 LysR, substrate-binding YPZ3_1059 IPR000847 Transcription regulator HTH, LysR YPZ3_1059 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1059 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1059 IPR037409 HTH-type transcriptional regulator XapR, PBP2 domain YPZ3_1061 IPR035994 Nucleoside phosphorylase superfamily YPZ3_1061 IPR010943 Xanthosine phosphorylase YPZ3_1061 IPR011268 Purine nucleoside phosphorylase YPZ3_1061 IPR018099 Purine phosphorylase, family 2, conserved site YPZ3_1061 IPR000845 Nucleoside phosphorylase domain YPZ3_1062 IPR004740 Nucleoside:H+ symporter YPZ3_1062 IPR036259 MFS transporter superfamily YPZ3_1062 IPR020846 Major facilitator superfamily domain YPZ3_1064 IPR004740 Nucleoside:H+ symporter YPZ3_1064 IPR036259 MFS transporter superfamily YPZ3_1064 IPR020846 Major facilitator superfamily domain YPZ3_1065 IPR025961 Heavy-metal resistance protein YPZ3_1066 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_1066 IPR005467 Histidine kinase domain YPZ3_1066 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_1066 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_1066 IPR029151 Periplasmic sensor-like domain superfamily YPZ3_1066 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_1066 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_1067 IPR011006 CheY-like superfamily YPZ3_1067 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPZ3_1067 IPR025944 Sigma-54 interaction domain, conserved site YPZ3_1067 IPR003593 AAA+ ATPase domain YPZ3_1067 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPZ3_1067 IPR002078 RNA polymerase sigma factor 54 interaction domain YPZ3_1067 IPR002197 DNA binding HTH domain, Fis-type YPZ3_1067 IPR009057 Homeobox-like domain superfamily YPZ3_1067 IPR001789 Signal transduction response regulator, receiver domain YPZ3_1067 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1068 IPR013785 Aldolase-type TIM barrel YPZ3_1068 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPZ3_1069 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1069 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1069 IPR000847 Transcription regulator HTH, LysR YPZ3_1069 IPR005119 LysR, substrate-binding YPZ3_1071 IPR000412 ABC-2 transporter YPZ3_1072 IPR000412 ABC-2 transporter YPZ3_1073 IPR017871 ABC transporter, conserved site YPZ3_1073 IPR003593 AAA+ ATPase domain YPZ3_1073 IPR003439 ABC transporter-like YPZ3_1073 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1074 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPZ3_1074 IPR022936 Uncharacterised protein family UPF0194, membrane protein YbhG YPZ3_1075 IPR009057 Homeobox-like domain superfamily YPZ3_1075 IPR001647 DNA-binding HTH domain, TetR-type YPZ3_1075 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPZ3_1075 IPR015292 Transcription regulator YbiH, C-terminal YPZ3_1075 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPZ3_1076 IPR014014 RNA helicase, DEAD-box type, Q motif YPZ3_1076 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1076 IPR001650 Helicase, C-terminal YPZ3_1076 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_1076 IPR011545 DEAD/DEAH box helicase domain YPZ3_1076 IPR028622 ATP-dependent RNA helicase RhlE YPZ3_1076 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPZ3_1078 IPR001207 Transposase, mutator type YPZ3_1079 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal YPZ3_1079 IPR003346 Transposase, IS116/IS110/IS902 YPZ3_1080 IPR011545 DEAD/DEAH box helicase domain YPZ3_1080 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPZ3_1080 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1080 IPR028622 ATP-dependent RNA helicase RhlE YPZ3_1080 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_1080 IPR014014 RNA helicase, DEAD-box type, Q motif YPZ3_1080 IPR001650 Helicase, C-terminal YPZ3_1083 IPR018517 tRNA-dihydrouridine synthase, conserved site YPZ3_1083 IPR001269 tRNA-dihydrouridine synthase YPZ3_1083 IPR032886 tRNA-dihydrouridine(16) synthase YPZ3_1083 IPR042270 tRNA-dihydrouridine(16) synthase, C-terminal YPZ3_1083 IPR013785 Aldolase-type TIM barrel YPZ3_1083 IPR035587 DUS-like, FMN-binding domain YPZ3_1084 IPR012338 Beta-lactamase/transpeptidase-like YPZ3_1084 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPZ3_1084 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPZ3_1085 IPR016166 FAD-binding domain, PCMH-type YPZ3_1085 IPR036318 FAD-binding, type PCMH-like superfamily YPZ3_1085 IPR016167 FAD-binding, type PCMH, subdomain 1 YPZ3_1085 IPR016169 FAD-binding, type PCMH, subdomain 2 YPZ3_1085 IPR016164 FAD-linked oxidase-like, C-terminal YPZ3_1085 IPR012256 D-lactate dehydrogenase YPZ3_1085 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 YPZ3_1085 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 YPZ3_1085 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal YPZ3_1085 IPR006094 FAD linked oxidase, N-terminal YPZ3_1086 IPR008173 Adenylyl cyclase CyaB YPZ3_1086 IPR023577 CYTH domain YPZ3_1086 IPR033469 CYTH-like domain superfamily YPZ3_1087 IPR002711 HNH endonuclease YPZ3_1087 IPR003615 HNH nuclease YPZ3_1089 IPR003593 AAA+ ATPase domain YPZ3_1089 IPR003439 ABC transporter-like YPZ3_1089 IPR017871 ABC transporter, conserved site YPZ3_1089 IPR012693 ABC transporter, phosphonate import, PhnC YPZ3_1089 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1090 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein YPZ3_1091 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1091 IPR035906 MetI-like superfamily YPZ3_1091 IPR005769 ABC transporter, permease PhnE/PtxC YPZ3_1092 IPR005769 ABC transporter, permease PhnE/PtxC YPZ3_1092 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1092 IPR035906 MetI-like superfamily YPZ3_1093 IPR009921 Domain of unknown function DUF1456 YPZ3_1094 IPR002078 RNA polymerase sigma factor 54 interaction domain YPZ3_1094 IPR009057 Homeobox-like domain superfamily YPZ3_1094 IPR003593 AAA+ ATPase domain YPZ3_1094 IPR002197 DNA binding HTH domain, Fis-type YPZ3_1094 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1094 IPR000014 PAS domain YPZ3_1094 IPR028082 Periplasmic binding protein-like I YPZ3_1094 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPZ3_1094 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPZ3_1094 IPR025944 Sigma-54 interaction domain, conserved site YPZ3_1095 IPR001851 ABC transporter, permease YPZ3_1096 IPR001851 ABC transporter, permease YPZ3_1097 IPR003593 AAA+ ATPase domain YPZ3_1097 IPR003439 ABC transporter-like YPZ3_1097 IPR017871 ABC transporter, conserved site YPZ3_1097 IPR005876 Cobalt transport protein ATP-binding subunit YPZ3_1097 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1098 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein YPZ3_1098 IPR003593 AAA+ ATPase domain YPZ3_1098 IPR003439 ABC transporter-like YPZ3_1098 IPR017871 ABC transporter, conserved site YPZ3_1098 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1101 IPR001763 Rhodanese-like domain YPZ3_1101 IPR036873 Rhodanese-like domain superfamily YPZ3_1101 IPR001307 Thiosulphate sulfurtransferase, conserved site YPZ3_1102 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPZ3_1103 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPZ3_1104 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1104 IPR035906 MetI-like superfamily YPZ3_1105 IPR003593 AAA+ ATPase domain YPZ3_1105 IPR003439 ABC transporter-like YPZ3_1105 IPR017871 ABC transporter, conserved site YPZ3_1105 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1106 IPR035906 MetI-like superfamily YPZ3_1106 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1107 IPR002293 Amino acid/polyamine transporter I YPZ3_1108 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_1108 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_1108 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily YPZ3_1108 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal YPZ3_1108 IPR000310 Orn/Lys/Arg decarboxylase, major domain YPZ3_1108 IPR011193 Ornithine/lysine/arginine decarboxylase YPZ3_1108 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_1108 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal YPZ3_1109 IPR000620 EamA domain YPZ3_1109 IPR004779 Carboxylate/Amino Acid/Amine Transporter YPZ3_1110 IPR001897 Porin, gammaproteobacterial YPZ3_1110 IPR033900 Porin domain, Gram-negative type YPZ3_1110 IPR023614 Porin domain superfamily YPZ3_1110 IPR001702 Porin, Gram-negative type YPZ3_1110 IPR013793 Porin, Gram-negative type, conserved site YPZ3_1111 IPR006554 Helicase-like, DEXD box c2 type YPZ3_1111 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1111 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_1111 IPR006555 ATP-dependent helicase, C-terminal YPZ3_1111 IPR010614 DEAD2 YPZ3_1111 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type YPZ3_1111 IPR001650 Helicase, C-terminal YPZ3_1111 IPR039000 ATP-dependent DNA helicase DinG YPZ3_1112 IPR010582 Catalase immune-responsive domain YPZ3_1112 IPR020835 Catalase superfamily YPZ3_1112 IPR037060 Catalase core domain superfamily YPZ3_1112 IPR011614 Catalase core domain YPZ3_1112 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 YPZ3_1112 IPR024708 Catalase active site YPZ3_1112 IPR040333 Catalase, clade 3 YPZ3_1112 IPR018028 Catalase, mono-functional, haem-containing YPZ3_1112 IPR002226 Catalase haem-binding site YPZ3_1113 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPZ3_1113 IPR009998 YfaZ YPZ3_1113 IPR023614 Porin domain superfamily YPZ3_1114 IPR013059 Tryptophan/tyrosine transporter YPZ3_1114 IPR013061 Tryptophan/tryrosine permease, conserved site YPZ3_1114 IPR018227 Amino acid/polyamine transporter 2 YPZ3_1115 IPR008135 Competence-induced protein CinA YPZ3_1115 IPR036425 MoaB/Mog-like domain superfamily YPZ3_1115 IPR036653 CinA-like, C-terminal YPZ3_1115 IPR001453 MoaB/Mog domain YPZ3_1116 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria YPZ3_1116 IPR005658 Proteinase inhibitor I11, ecotin YPZ3_1116 IPR036198 Ecotin superfamily YPZ3_1117 IPR009078 Ferritin-like superfamily YPZ3_1117 IPR033909 Ribonucleotide reductase small subunit YPZ3_1117 IPR012348 Ribonucleotide reductase-like YPZ3_1117 IPR000358 Ribonucleotide reductase small subunit family YPZ3_1117 IPR030475 Ribonucleotide reductase small subunit, acitve site YPZ3_1118 IPR039718 Ribonucleoside-diphosphate reductase large subunit YPZ3_1118 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YPZ3_1118 IPR013509 Ribonucleotide reductase large subunit, N-terminal YPZ3_1118 IPR000788 Ribonucleotide reductase large subunit, C-terminal YPZ3_1118 IPR005144 ATP-cone domain YPZ3_1118 IPR013346 Ribonucleotide reductase, class I , alpha subunit YPZ3_1119 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_1119 IPR010233 Ubiquinone biosynthesis O-methyltransferase YPZ3_1120 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily YPZ3_1120 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta YPZ3_1120 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal YPZ3_1120 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YPZ3_1120 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat YPZ3_1120 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YPZ3_1120 IPR005743 DNA gyrase, subunit A YPZ3_1121 IPR001789 Signal transduction response regulator, receiver domain YPZ3_1121 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal YPZ3_1121 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_1121 IPR038388 RcsC, C-terminal domain superfamily YPZ3_1121 IPR030856 Sensor histidine kinase RcsC YPZ3_1121 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_1121 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_1121 IPR005467 Histidine kinase domain YPZ3_1121 IPR011006 CheY-like superfamily YPZ3_1121 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_1121 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_1122 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1122 IPR000792 Transcription regulator LuxR, C-terminal YPZ3_1122 IPR001789 Signal transduction response regulator, receiver domain YPZ3_1122 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_1122 IPR030864 Transcriptional regulatory protein RcsB YPZ3_1122 IPR011006 CheY-like superfamily YPZ3_1123 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_1123 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_1123 IPR036641 HPT domain superfamily YPZ3_1123 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPZ3_1123 IPR038616 Phosphotransferase RcsD, RcsD-ABL domain superfamily YPZ3_1123 IPR030861 Phosphotransferase RcsD YPZ3_1123 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain YPZ3_1123 IPR005467 Histidine kinase domain YPZ3_1124 IPR005467 Histidine kinase domain YPZ3_1124 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_1124 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain YPZ3_1124 IPR030861 Phosphotransferase RcsD YPZ3_1124 IPR036641 HPT domain superfamily YPZ3_1124 IPR038616 Phosphotransferase RcsD, RcsD-ABL domain superfamily YPZ3_1124 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_1124 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPZ3_1125 IPR036259 MFS transporter superfamily YPZ3_1125 IPR011701 Major facilitator superfamily YPZ3_1125 IPR020846 Major facilitator superfamily domain YPZ3_1126 IPR001702 Porin, Gram-negative type YPZ3_1126 IPR013793 Porin, Gram-negative type, conserved site YPZ3_1126 IPR023614 Porin domain superfamily YPZ3_1126 IPR001897 Porin, gammaproteobacterial YPZ3_1128 IPR001466 Beta-lactamase-related YPZ3_1128 IPR012338 Beta-lactamase/transpeptidase-like YPZ3_1129 IPR036259 MFS transporter superfamily YPZ3_1129 IPR039672 Lactose permease-like YPZ3_1129 IPR001927 Sodium:galactoside symporter YPZ3_1129 IPR018043 Sodium:galactoside symporter, conserved site YPZ3_1130 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D YPZ3_1130 IPR001279 Metallo-beta-lactamase YPZ3_1130 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPZ3_1131 IPR000727 Target SNARE coiled-coil homology domain YPZ3_1131 IPR004090 Chemotaxis methyl-accepting receptor YPZ3_1131 IPR029151 Periplasmic sensor-like domain superfamily YPZ3_1131 IPR033479 Double Cache domain 1 YPZ3_1131 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_1131 IPR003660 HAMP domain YPZ3_1132 IPR020080 Outer membrane adhesin/peptidase omptin YPZ3_1132 IPR020079 Peptidase A26, omptin, conserved site YPZ3_1132 IPR000036 Peptidase A26, omptin YPZ3_1133 IPR039418 LexA-like YPZ3_1133 IPR001387 Cro/C1-type helix-turn-helix domain YPZ3_1133 IPR015927 Peptidase S24/S26A/S26B/S26C YPZ3_1133 IPR036286 LexA/Signal peptidase-like superfamily YPZ3_1133 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_1134 IPR010534 Bacteriophage 933W, GpQ YPZ3_1135 IPR031475 Nucleotide-binding C-terminal domain YPZ3_1135 IPR010737 Four-carbon acid sugar kinase, N-terminal domain YPZ3_1135 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily YPZ3_1135 IPR042213 Nucleotide-binding, C-terminal domain superfamily YPZ3_1136 IPR001303 Class II aldolase/adducin N-terminal YPZ3_1136 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPZ3_1137 IPR014036 DeoR C-terminal sensor domain YPZ3_1137 IPR001034 DeoR-type HTH domain YPZ3_1137 IPR037171 NagB/RpiA transferase-like YPZ3_1137 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPZ3_1137 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1137 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1138 IPR036237 Xylose isomerase-like superfamily YPZ3_1138 IPR026040 Hydroxypyruvate isomerase-like YPZ3_1138 IPR013022 Xylose isomerase-like, TIM barrel domain YPZ3_1140 IPR020287 Tail sheath protein, C-terminal domain YPZ3_1140 IPR007067 Tail sheath protein YPZ3_1140 IPR035089 Tail sheath protein, subtilisin-like domain YPZ3_1147 IPR006949 Baseplate protein J-like YPZ3_1149 IPR011083 Phage tail collar domain YPZ3_1149 IPR037053 Phage tail collar domain superfamily YPZ3_1150 IPR009057 Homeobox-like domain superfamily YPZ3_1150 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1150 IPR001347 Sugar isomerase (SIS) YPZ3_1150 IPR035472 RpiR-like, SIS domain YPZ3_1150 IPR000281 Helix-turn-helix protein RpiR YPZ3_1151 IPR001360 Glycoside hydrolase family 1 YPZ3_1151 IPR018120 Glycoside hydrolase family 1, active site YPZ3_1151 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site YPZ3_1151 IPR017853 Glycoside hydrolase superfamily YPZ3_1154 IPR008514 Type VI secretion system effector, Hcp YPZ3_1154 IPR036624 Hcp1-like superfamily YPZ3_1154 IPR003615 HNH nuclease YPZ3_1156 IPR024588 Inner membrane protein YejM, N-terminal YPZ3_1156 IPR012159 Inner membrane protein YejM YPZ3_1156 IPR000917 Sulfatase, N-terminal YPZ3_1156 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPZ3_1157 IPR007358 Nucleoid-associated protein NdpA YPZ3_1158 IPR002686 Transposase IS200-like YPZ3_1158 IPR036515 Transposase IS200-like superfamily YPZ3_1159 IPR006935 Helicase/UvrB, N-terminal YPZ3_1159 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_1159 IPR001650 Helicase, C-terminal YPZ3_1159 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1159 IPR011332 Zinc-binding ribosomal protein YPZ3_1160 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPZ3_1160 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPZ3_1160 IPR006145 Pseudouridine synthase, RsuA/RluA YPZ3_1160 IPR002942 RNA-binding S4 domain YPZ3_1160 IPR036986 RNA-binding S4 domain superfamily YPZ3_1160 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPZ3_1160 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain YPZ3_1161 IPR004734 Multidrug resistance protein YPZ3_1161 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YPZ3_1161 IPR011701 Major facilitator superfamily YPZ3_1161 IPR020846 Major facilitator superfamily domain YPZ3_1161 IPR036259 MFS transporter superfamily YPZ3_1162 IPR020489 Uncharacterised protein family YejG YPZ3_1163 IPR017871 ABC transporter, conserved site YPZ3_1163 IPR003439 ABC transporter-like YPZ3_1163 IPR003593 AAA+ ATPase domain YPZ3_1163 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPZ3_1163 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1164 IPR035906 MetI-like superfamily YPZ3_1164 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPZ3_1164 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1165 IPR035906 MetI-like superfamily YPZ3_1165 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1166 IPR000914 Solute-binding protein family 5 domain YPZ3_1166 IPR039424 Solute-binding protein family 5 YPZ3_1166 IPR030678 Peptide/nickel binding protein, MppA-type YPZ3_1167 IPR001633 EAL domain YPZ3_1167 IPR035919 EAL domain superfamily YPZ3_1167 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain YPZ3_1168 IPR000064 Endopeptidase, NLPC/P60 domain YPZ3_1168 IPR038765 Papain-like cysteine peptidase superfamily YPZ3_1169 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPZ3_1169 IPR032908 Lipid A 1-diphosphate synthase YPZ3_1169 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YPZ3_1170 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YPZ3_1170 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1170 IPR003495 CobW/HypB/UreG, nucleotide-binding domain YPZ3_1171 IPR011711 GntR, C-terminal YPZ3_1171 IPR008920 Transcription regulator FadR/GntR, C-terminal YPZ3_1171 IPR000524 Transcription regulator HTH, GntR YPZ3_1171 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1171 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1172 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPZ3_1172 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPZ3_1172 IPR013131 Mannitol dehydrogenase, N-terminal YPZ3_1172 IPR023027 Mannitol dehydrogenase, conserved site YPZ3_1172 IPR013118 Mannitol dehydrogenase, C-terminal YPZ3_1172 IPR000669 Mannitol dehydrogenase YPZ3_1172 IPR036291 NAD(P)-binding domain superfamily YPZ3_1173 IPR036237 Xylose isomerase-like superfamily YPZ3_1173 IPR004628 Mannonate dehydratase YPZ3_1174 IPR020599 Translation elongation factor P/YeiP YPZ3_1174 IPR014722 Ribosomal protein L2, domain 2 YPZ3_1174 IPR012340 Nucleic acid-binding, OB-fold YPZ3_1174 IPR015365 Elongation factor P, C-terminal YPZ3_1174 IPR008991 Translation protein SH3-like domain superfamily YPZ3_1174 IPR013852 Translation elongation factor P/YeiP, conserved site YPZ3_1174 IPR011897 Translation elongation factor P-like, YeiP YPZ3_1174 IPR001059 Translation elongation factor P/YeiP, central YPZ3_1174 IPR013185 Translation elongation factor, KOW-like YPZ3_1175 IPR018227 Amino acid/polyamine transporter 2 YPZ3_1175 IPR013059 Tryptophan/tyrosine transporter YPZ3_1176 IPR002347 Short-chain dehydrogenase/reductase SDR YPZ3_1176 IPR036291 NAD(P)-binding domain superfamily YPZ3_1176 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPZ3_1177 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPZ3_1177 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPZ3_1177 IPR006236 D-3-phosphoglycerate dehydrogenase YPZ3_1177 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPZ3_1177 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_1177 IPR002912 ACT domain YPZ3_1177 IPR029009 Allosteric substrate binding domain superfamily YPZ3_1177 IPR036291 NAD(P)-binding domain superfamily YPZ3_1179 IPR016160 Aldehyde dehydrogenase, cysteine active site YPZ3_1179 IPR015590 Aldehyde dehydrogenase domain YPZ3_1179 IPR016161 Aldehyde/histidinol dehydrogenase YPZ3_1179 IPR010102 Succinate semialdehyde dehydrogenase YPZ3_1179 IPR016163 Aldehyde dehydrogenase, C-terminal YPZ3_1179 IPR016162 Aldehyde dehydrogenase, N-terminal YPZ3_1179 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPZ3_1180 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPZ3_1180 IPR018483 Carbohydrate kinase, FGGY, conserved site YPZ3_1180 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPZ3_1180 IPR006000 Xylulokinase YPZ3_1180 IPR000577 Carbohydrate kinase, FGGY YPZ3_1181 IPR004788 Ribose 5-phosphate isomerase, type A YPZ3_1181 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup YPZ3_1181 IPR037171 NagB/RpiA transferase-like YPZ3_1183 IPR003593 AAA+ ATPase domain YPZ3_1183 IPR003439 ABC transporter-like YPZ3_1183 IPR017871 ABC transporter, conserved site YPZ3_1183 IPR015861 ABC transporter, ribose import, RbsA YPZ3_1183 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1184 IPR001851 ABC transporter, permease YPZ3_1185 IPR000086 NUDIX hydrolase domain YPZ3_1185 IPR020476 NUDIX hydrolase YPZ3_1185 IPR015797 NUDIX hydrolase-like domain superfamily YPZ3_1185 IPR020084 NUDIX hydrolase, conserved site YPZ3_1186 IPR035895 HPr-like superfamily YPZ3_1186 IPR016152 Phosphotransferase/anion transporter YPZ3_1186 IPR000032 Phosphocarrier protein HPr-like YPZ3_1186 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPZ3_1186 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YPZ3_1186 IPR002178 PTS EIIA type-2 domain YPZ3_1187 IPR017583 Tagatose/fructose phosphokinase YPZ3_1187 IPR029056 Ribokinase-like YPZ3_1187 IPR011611 Carbohydrate kinase PfkB YPZ3_1187 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPZ3_1187 IPR022463 Fructose 1-phosphate kinase YPZ3_1188 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPZ3_1188 IPR013014 Phosphotransferase system, EIIC component, type 2 YPZ3_1188 IPR003352 Phosphotransferase system, EIIC YPZ3_1188 IPR036095 PTS system IIB component-like superfamily YPZ3_1188 IPR006327 Phosphotransferase system, fructose IIC component YPZ3_1188 IPR013011 Phosphotransferase system, EIIB component, type 2 YPZ3_1188 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPZ3_1189 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1189 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_1189 IPR001867 OmpR/PhoB-type DNA-binding domain YPZ3_1190 IPR035182 Protein of unknown function PsaF YPZ3_1192 IPR013783 Immunoglobulin-like fold YPZ3_1192 IPR008962 PapD-like superfamily YPZ3_1192 IPR016148 Pili assembly chaperone, C-terminal YPZ3_1192 IPR001829 Pili assembly chaperone, bacterial YPZ3_1192 IPR018046 Pili assembly chaperone, conserved site YPZ3_1192 IPR016147 Pili assembly chaperone, N-terminal YPZ3_1192 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPZ3_1193 IPR037224 PapC, N-terminal domain superfamily YPZ3_1193 IPR018030 Fimbrial membrane usher, conserved site YPZ3_1193 IPR042186 Outer membrane usher protein FimD, plug domain YPZ3_1193 IPR025949 PapC-like, C-terminal domain YPZ3_1193 IPR025885 PapC, N-terminal domain YPZ3_1193 IPR000015 Outer membrane usher protein YPZ3_1194 IPR001719 AP endonuclease 2 YPZ3_1194 IPR018246 AP endonuclease 2, zinc binding site YPZ3_1194 IPR036237 Xylose isomerase-like superfamily YPZ3_1194 IPR013022 Xylose isomerase-like, TIM barrel domain YPZ3_1195 IPR004630 Uncharacterised protein family UPF0324, bacteria YPZ3_1195 IPR018383 Uncharacterised protein family UPF0324, prokaryote YPZ3_1196 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1196 IPR000847 Transcription regulator HTH, LysR YPZ3_1196 IPR005119 LysR, substrate-binding YPZ3_1196 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1197 IPR004840 Amino acid permease, conserved site YPZ3_1197 IPR004841 Amino acid permease/ SLC12A domain YPZ3_1199 IPR000522 ABC transporter, permease protein, BtuC-like YPZ3_1199 IPR037294 ABC transporter, BtuC-like YPZ3_1200 IPR003593 AAA+ ATPase domain YPZ3_1200 IPR003439 ABC transporter-like YPZ3_1200 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1200 IPR015863 ABC transporter, hemin import, HmuV YPZ3_1201 IPR000531 TonB-dependent receptor-like, beta-barrel YPZ3_1201 IPR010916 TonB box, conserved site YPZ3_1201 IPR039426 Vitamin B12 transporter BtuB-like YPZ3_1201 IPR012910 TonB-dependent receptor, plug domain YPZ3_1201 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPZ3_1201 IPR010917 TonB-dependent receptor, conserved site YPZ3_1201 IPR037066 TonB-dependent receptor, plug domain superfamily YPZ3_1202 IPR004046 Glutathione S-transferase, C-terminal YPZ3_1202 IPR036249 Thioredoxin-like superfamily YPZ3_1202 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPZ3_1202 IPR010987 Glutathione S-transferase, C-terminal-like YPZ3_1202 IPR004045 Glutathione S-transferase, N-terminal YPZ3_1203 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like YPZ3_1203 IPR036412 HAD-like superfamily YPZ3_1203 IPR023214 HAD superfamily YPZ3_1205 IPR004872 Lipoprotein NlpA family YPZ3_1206 IPR003439 ABC transporter-like YPZ3_1206 IPR026253 Methionine import ATP-binding protein MetN YPZ3_1206 IPR017871 ABC transporter, conserved site YPZ3_1206 IPR003593 AAA+ ATPase domain YPZ3_1206 IPR018449 NIL domain YPZ3_1206 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain YPZ3_1206 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal YPZ3_1206 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1207 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1207 IPR035906 MetI-like superfamily YPZ3_1208 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPZ3_1208 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily YPZ3_1208 IPR012338 Beta-lactamase/transpeptidase-like YPZ3_1208 IPR015956 Penicillin-binding protein, C-terminal domain superfamily YPZ3_1208 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YPZ3_1208 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPZ3_1209 IPR004694 Hydroxy amino acid transporter YPZ3_1210 IPR014036 DeoR C-terminal sensor domain YPZ3_1210 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPZ3_1210 IPR037171 NagB/RpiA transferase-like YPZ3_1210 IPR001034 DeoR-type HTH domain YPZ3_1211 IPR028581 Deoxyribose-phosphate aldolase type I YPZ3_1211 IPR002915 DeoC/FbaB/ lacD aldolase YPZ3_1211 IPR011343 Deoxyribose-phosphate aldolase YPZ3_1211 IPR013785 Aldolase-type TIM barrel YPZ3_1212 IPR033879 Undecaprenyl-diphosphatase YPZ3_1212 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPZ3_1212 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YPZ3_1214 IPR006512 YidE/YbjL duplication YPZ3_1214 IPR023017 Transport protein YbjL, putative YPZ3_1214 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YPZ3_1214 IPR006037 Regulator of K+ conductance, C-terminal YPZ3_1215 IPR019660 Putative sensory transduction regulator YbjN YPZ3_1216 IPR006059 Bacterial extracellular solute-binding protein YPZ3_1216 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein YPZ3_1217 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPZ3_1217 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_1217 IPR017871 ABC transporter, conserved site YPZ3_1217 IPR013611 Transport-associated OB, type 2 YPZ3_1217 IPR003439 ABC transporter-like YPZ3_1217 IPR003593 AAA+ ATPase domain YPZ3_1217 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1218 IPR035906 MetI-like superfamily YPZ3_1218 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1219 IPR035906 MetI-like superfamily YPZ3_1219 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1220 IPR019703 Protein of unknown function DUF2593 YPZ3_1221 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC YPZ3_1221 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_1221 IPR010280 (Uracil-5)-methyltransferase family YPZ3_1221 IPR030390 RNA methyltransferase TrmA, active site YPZ3_1221 IPR030391 RNA methyltransferase TrmA, conserved site YPZ3_1222 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPZ3_1222 IPR018313 Solute-binding protein family 3, conserved site YPZ3_1222 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPZ3_1222 IPR001320 Ionotropic glutamate receptor YPZ3_1225 IPR000522 ABC transporter, permease protein, BtuC-like YPZ3_1225 IPR037294 ABC transporter, BtuC-like YPZ3_1226 IPR000522 ABC transporter, permease protein, BtuC-like YPZ3_1226 IPR037294 ABC transporter, BtuC-like YPZ3_1227 IPR017871 ABC transporter, conserved site YPZ3_1227 IPR003439 ABC transporter-like YPZ3_1227 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1227 IPR003593 AAA+ ATPase domain YPZ3_1228 IPR036291 NAD(P)-binding domain superfamily YPZ3_1228 IPR004298 Nicotianamine synthase YPZ3_1229 IPR016935 Opine metallophore dehydrogenase YPZ3_1229 IPR036291 NAD(P)-binding domain superfamily YPZ3_1230 IPR000620 EamA domain YPZ3_1231 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPZ3_1231 IPR035906 MetI-like superfamily YPZ3_1231 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1232 IPR035906 MetI-like superfamily YPZ3_1232 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPZ3_1232 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1233 IPR001320 Ionotropic glutamate receptor YPZ3_1233 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPZ3_1233 IPR018313 Solute-binding protein family 3, conserved site YPZ3_1233 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPZ3_1234 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1234 IPR003593 AAA+ ATPase domain YPZ3_1234 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPZ3_1234 IPR003439 ABC transporter-like YPZ3_1234 IPR017871 ABC transporter, conserved site YPZ3_1235 IPR036263 Chorismate mutase type II superfamily YPZ3_1235 IPR008240 Chorismate mutase, periplasmic YPZ3_1235 IPR002701 Chorismate mutase II, prokaryotic-type YPZ3_1236 IPR024289 Domain of unknown function DUF3828 YPZ3_1237 IPR001509 NAD-dependent epimerase/dehydratase YPZ3_1237 IPR036291 NAD(P)-binding domain superfamily YPZ3_1238 IPR021295 Protein of unknown function DUF2867 YPZ3_1238 IPR036291 NAD(P)-binding domain superfamily YPZ3_1238 IPR016040 NAD(P)-binding domain YPZ3_1239 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase YPZ3_1239 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_1239 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_1239 IPR023603 Threonine aldolase YPZ3_1239 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_1240 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPZ3_1240 IPR000399 TPP-binding enzyme, conserved site YPZ3_1240 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPZ3_1240 IPR029061 Thiamin diphosphate-binding fold YPZ3_1240 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPZ3_1240 IPR012000 Thiamine pyrophosphate enzyme, central domain YPZ3_1241 IPR017927 FAD-binding domain, ferredoxin reductase-type YPZ3_1241 IPR017938 Riboflavin synthase-like beta-barrel YPZ3_1241 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPZ3_1241 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPZ3_1241 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPZ3_1241 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPZ3_1241 IPR012675 Beta-grasp domain superfamily YPZ3_1241 IPR036010 2Fe-2S ferredoxin-like superfamily YPZ3_1241 IPR000951 Phthalate dioxygenase reductase YPZ3_1242 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase YPZ3_1242 IPR010048 Hydroxylamine reductase YPZ3_1242 IPR016099 Prismane-like, alpha/beta-sandwich YPZ3_1242 IPR011254 Prismane-like superfamily YPZ3_1242 IPR016100 Prismane, alpha-bundle YPZ3_1243 IPR005642 Lysine exporter LysO YPZ3_1244 IPR034139 OLD protein-like, TOPRIM domain YPZ3_1244 IPR006171 TOPRIM domain YPZ3_1244 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1244 IPR022602 Protein of unknown function DUF2813 YPZ3_1245 IPR007488 Protein of unknown function DUF535 YPZ3_1246 IPR030190 Macrolide export protein MacA YPZ3_1246 IPR006143 RND efflux pump, membrane fusion protein YPZ3_1246 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPZ3_1247 IPR003838 ABC transporter permease protein domain YPZ3_1247 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1247 IPR003593 AAA+ ATPase domain YPZ3_1247 IPR017911 ABC transporter, macrolide export, ATP-binding domain YPZ3_1247 IPR017871 ABC transporter, conserved site YPZ3_1247 IPR025857 MacB-like periplasmic core domain YPZ3_1247 IPR003439 ABC transporter-like YPZ3_1248 IPR022935 ATP-dependent Clp protease adaptor protein ClpS YPZ3_1248 IPR003769 Adaptor protein ClpS, core YPZ3_1248 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YPZ3_1249 IPR004176 Clp, N-terminal YPZ3_1249 IPR018368 ClpA/B, conserved site 1 YPZ3_1249 IPR001270 ClpA/B family YPZ3_1249 IPR003959 ATPase, AAA-type, core YPZ3_1249 IPR003593 AAA+ ATPase domain YPZ3_1249 IPR019489 Clp ATPase, C-terminal YPZ3_1249 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA YPZ3_1249 IPR028299 ClpA/B, conserved site 2 YPZ3_1249 IPR036628 Clp, N-terminal domain superfamily YPZ3_1249 IPR041546 ClpA/ClpB, AAA lid domain YPZ3_1249 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1250 IPR036515 Transposase IS200-like superfamily YPZ3_1250 IPR002686 Transposase IS200-like YPZ3_1251 IPR016181 Acyl-CoA N-acyltransferase YPZ3_1251 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase YPZ3_1251 IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal YPZ3_1252 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPZ3_1252 IPR011527 ABC transporter type 1, transmembrane domain YPZ3_1252 IPR003439 ABC transporter-like YPZ3_1252 IPR017871 ABC transporter, conserved site YPZ3_1252 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC YPZ3_1252 IPR003593 AAA+ ATPase domain YPZ3_1252 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1253 IPR017871 ABC transporter, conserved site YPZ3_1253 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD YPZ3_1253 IPR003439 ABC transporter-like YPZ3_1253 IPR011527 ABC transporter type 1, transmembrane domain YPZ3_1253 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPZ3_1253 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1253 IPR003593 AAA+ ATPase domain YPZ3_1253 IPR039421 Type I protein exporter YPZ3_1254 IPR023753 FAD/NAD(P)-binding domain YPZ3_1254 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site YPZ3_1254 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_1254 IPR005982 Thioredoxin reductase YPZ3_1255 IPR019888 Transcription regulator AsnC-type YPZ3_1255 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPZ3_1255 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPZ3_1255 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1255 IPR011008 Dimeric alpha-beta barrel YPZ3_1255 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1255 IPR011991 ArsR-like helix-turn-helix domain YPZ3_1255 IPR000485 AsnC-type HTH domain YPZ3_1256 IPR041027 FtsK alpha domain YPZ3_1256 IPR018541 FtsK gamma domain YPZ3_1256 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1256 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1256 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1256 IPR025199 DNA translocase FtsK, 4TM region YPZ3_1256 IPR002543 FtsK domain YPZ3_1257 IPR004564 Outer membrane lipoprotein carrier protein LolA-like YPZ3_1257 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria YPZ3_1257 IPR029046 Lipoprotein localisation LolA/LolB/LppX YPZ3_1258 IPR003593 AAA+ ATPase domain YPZ3_1258 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1258 IPR021886 MgsA AAA+ ATPase C-terminal YPZ3_1258 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPZ3_1258 IPR032423 AAA C-terminal domain YPZ3_1258 IPR003959 ATPase, AAA-type, core YPZ3_1259 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm YPZ3_1259 IPR033729 Serine-tRNA ligase catalytic core domain YPZ3_1259 IPR015866 Serine-tRNA synthetase, type1, N-terminal YPZ3_1259 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) YPZ3_1259 IPR006195 Aminoacyl-tRNA synthetase, class II YPZ3_1259 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily YPZ3_1259 IPR002317 Serine-tRNA ligase, type1 YPZ3_1260 IPR011701 Major facilitator superfamily YPZ3_1260 IPR023745 MSF-type transporter, YcaD YPZ3_1260 IPR020846 Major facilitator superfamily domain YPZ3_1260 IPR036259 MFS transporter superfamily YPZ3_1261 IPR012838 Pyruvate formate-lyase 1 activating enzyme YPZ3_1261 IPR034457 Organic radical-activating enzymes YPZ3_1261 IPR007197 Radical SAM YPZ3_1261 IPR001989 Radical-activating enzyme, conserved site YPZ3_1261 IPR012839 Organic radical enzyme activase YPZ3_1261 IPR034465 Pyruvate formate-lyase activase YPZ3_1261 IPR013785 Aldolase-type TIM barrel YPZ3_1263 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPZ3_1263 IPR001150 Glycine radical domain YPZ3_1263 IPR004184 Pyruvate formate lyase domain YPZ3_1263 IPR005949 Formate acetyltransferase YPZ3_1264 IPR000292 Formate/nitrite transporter YPZ3_1264 IPR023999 Formate transporter FocA, putative YPZ3_1264 IPR023271 Aquaporin-like YPZ3_1264 IPR024002 Formate/nitrite transporter, conserved site YPZ3_1265 IPR003776 YcaO-like domain YPZ3_1265 IPR041080 YcaO cyclodehydratase, C-terminal YPZ3_1266 IPR027475 Asparaginase/glutaminase, active site 2 YPZ3_1266 IPR027474 L-asparaginase, N-terminal YPZ3_1266 IPR027473 L-asparaginase, C-terminal YPZ3_1266 IPR040919 Asparaginase/glutaminase, C-terminal YPZ3_1266 IPR004550 L-asparaginase, type II YPZ3_1266 IPR020827 Asparaginase/glutaminase, active site 1 YPZ3_1266 IPR006034 Asparaginase/glutaminase-like YPZ3_1266 IPR036152 Asparaginase/glutaminase-like superfamily YPZ3_1266 IPR037152 L-asparaginase, N-terminal domain superfamily YPZ3_1267 IPR005594 YadA-like, C-terminal YPZ3_1267 IPR008640 Head domain of trimeric autotransporter adhesin YPZ3_1267 IPR011049 Serralysin-like metalloprotease, C-terminal YPZ3_1267 IPR024973 ESPR domain YPZ3_1267 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPZ3_1267 IPR008640 Head domain of trimeric autotransporter adhesin YPZ3_1267 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPZ3_1267 IPR024973 ESPR domain YPZ3_1267 IPR011049 Serralysin-like metalloprotease, C-terminal YPZ3_1267 IPR005594 YadA-like, C-terminal YPZ3_1269 IPR000192 Aminotransferase class V domain YPZ3_1269 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPZ3_1269 IPR022278 Phosphoserine aminotransferase YPZ3_1269 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_1269 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_1269 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_1270 IPR001986 Enolpyruvate transferase domain YPZ3_1270 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YPZ3_1270 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site YPZ3_1270 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase YPZ3_1270 IPR036968 Enolpyruvate transferase domain superfamily YPZ3_1271 IPR011994 Cytidylate kinase domain YPZ3_1271 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1271 IPR003136 Cytidylate kinase YPZ3_1272 IPR000110 Ribosomal protein S1 YPZ3_1272 IPR012340 Nucleic acid-binding, OB-fold YPZ3_1272 IPR022967 RNA-binding domain, S1 YPZ3_1272 IPR003029 S1 domain YPZ3_1273 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPZ3_1273 IPR001279 Metallo-beta-lactamase YPZ3_1273 IPR004797 Competence protein ComEC/Rec2 YPZ3_1273 IPR035681 ComA-like, MBL domain YPZ3_1273 IPR004477 ComEC/Rec2-related protein YPZ3_1274 IPR017871 ABC transporter, conserved site YPZ3_1274 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPZ3_1274 IPR003593 AAA+ ATPase domain YPZ3_1274 IPR011527 ABC transporter type 1, transmembrane domain YPZ3_1274 IPR039421 Type I protein exporter YPZ3_1274 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1274 IPR011917 ABC transporter, lipid A export, MsbA YPZ3_1274 IPR003439 ABC transporter-like YPZ3_1275 IPR003758 Tetraacyldisaccharide 4'-kinase YPZ3_1275 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1276 IPR009770 Domain of unknown function DUF1338 YPZ3_1277 IPR003329 Acylneuraminate cytidylyltransferase YPZ3_1277 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase YPZ3_1277 IPR029044 Nucleotide-diphospho-sugar transferases YPZ3_1278 IPR011009 Protein kinase-like domain superfamily YPZ3_1278 IPR002575 Aminoglycoside phosphotransferase YPZ3_1279 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase YPZ3_1279 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_1280 IPR005582 Chromosome partition protein MukF YPZ3_1280 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1280 IPR033439 Chromosome partition protein MukF, winged-helix domain YPZ3_1280 IPR033441 Chromosome partition protein MukF, C-terminal domain YPZ3_1280 IPR010916 TonB box, conserved site YPZ3_1280 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1280 IPR038198 MukF, C-terminal domain superfamily YPZ3_1280 IPR033440 Chromosome partition protein MukF, middle domain YPZ3_1280 IPR036141 MukF, middle domain superfamily YPZ3_1281 IPR042037 MukE, C-terminal domain YPZ3_1281 IPR042038 MukE, N-terminal domain YPZ3_1281 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE YPZ3_1282 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1282 IPR007406 MukB, N-terminal domain YPZ3_1282 IPR032520 MukB, hinge domain YPZ3_1282 IPR012090 Chromosome partition protein MukB YPZ3_1284 IPR038063 L,D-transpeptidase catalytic domain-like YPZ3_1284 IPR036365 PGBD-like superfamily YPZ3_1284 IPR002477 Peptidoglycan binding-like YPZ3_1284 IPR005490 L,D-transpeptidase catalytic domain YPZ3_1285 IPR010275 Protein of unknown function DUF882 YPZ3_1285 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily YPZ3_1285 IPR006311 Twin-arginine translocation pathway, signal sequence YPZ3_1286 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPZ3_1286 IPR001279 Metallo-beta-lactamase YPZ3_1287 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_1287 IPR000796 Aspartate/other aminotransferase YPZ3_1287 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YPZ3_1287 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_1287 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_1287 IPR004839 Aminotransferase, class I/classII YPZ3_1288 IPR033900 Porin domain, Gram-negative type YPZ3_1288 IPR023614 Porin domain superfamily YPZ3_1288 IPR013793 Porin, Gram-negative type, conserved site YPZ3_1288 IPR001702 Porin, Gram-negative type YPZ3_1288 IPR001897 Porin, gammaproteobacterial YPZ3_1289 IPR006195 Aminoacyl-tRNA synthetase, class II YPZ3_1289 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPZ3_1289 IPR012340 Nucleic acid-binding, OB-fold YPZ3_1289 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb YPZ3_1289 IPR004522 Asparagine-tRNA ligase YPZ3_1289 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPZ3_1290 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal YPZ3_1290 IPR006406 Nicotinate phosphoribosyltransferase YPZ3_1290 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain YPZ3_1290 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase YPZ3_1290 IPR007229 Nicotinate phosphoribosyltransferase family YPZ3_1291 IPR027268 Peptidase M4/M1, CTD superfamily YPZ3_1291 IPR042097 Aminopeptidase N-like , N-terminal YPZ3_1291 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal YPZ3_1291 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold YPZ3_1291 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily YPZ3_1291 IPR014782 Peptidase M1, membrane alanine aminopeptidase YPZ3_1291 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase YPZ3_1291 IPR012779 Peptidase M1, alanyl aminopeptidase YPZ3_1291 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily YPZ3_1292 IPR005720 Dihydroorotate dehydrogenase domain YPZ3_1292 IPR005719 Dihydroorotate dehydrogenase, class 2 YPZ3_1292 IPR001295 Dihydroorotate dehydrogenase, conserved site YPZ3_1292 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 YPZ3_1292 IPR013785 Aldolase-type TIM barrel YPZ3_1293 IPR009809 Cell division protein ZapC YPZ3_1294 IPR011037 Pyruvate kinase-like, insert domain superfamily YPZ3_1294 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPZ3_1294 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPZ3_1294 IPR005302 Molybdenum cofactor sulfurase, C-terminal YPZ3_1294 IPR005303 MOSC, N-terminal beta barrel YPZ3_1294 IPR012675 Beta-grasp domain superfamily YPZ3_1294 IPR036010 2Fe-2S ferredoxin-like superfamily YPZ3_1295 IPR004114 THUMP domain YPZ3_1295 IPR019614 S-adenosylmethionine-dependent methyltransferase YPZ3_1295 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_1295 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPZ3_1295 IPR017244 Ribosomal RNA large subunit methyltransferase K/L YPZ3_1295 IPR000241 Putative RNA methylase domain YPZ3_1296 IPR032781 ABC-transporter extension domain YPZ3_1296 IPR003439 ABC transporter-like YPZ3_1296 IPR017871 ABC transporter, conserved site YPZ3_1296 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily YPZ3_1296 IPR032524 ABC transporter Uup, C-terminal YPZ3_1296 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1296 IPR003593 AAA+ ATPase domain YPZ3_1297 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type YPZ3_1297 IPR007498 Intermembrane transport protein PqiA-like YPZ3_1298 IPR003399 Mce/MlaD YPZ3_1299 IPR005586 ABC-type transport auxiliary lipoprotein component YPZ3_1300 IPR002686 Transposase IS200-like YPZ3_1300 IPR036515 Transposase IS200-like superfamily YPZ3_1301 IPR016039 Thiolase-like YPZ3_1301 IPR014030 Beta-ketoacyl synthase, N-terminal YPZ3_1301 IPR014031 Beta-ketoacyl synthase, C-terminal YPZ3_1301 IPR000794 Beta-ketoacyl synthase YPZ3_1301 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPZ3_1301 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPZ3_1301 IPR018201 Beta-ketoacyl synthase, active site YPZ3_1302 IPR003593 AAA+ ATPase domain YPZ3_1302 IPR001270 ClpA/B family YPZ3_1302 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_1302 IPR002611 IstB-like ATP-binding protein YPZ3_1302 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1303 IPR001584 Integrase, catalytic core YPZ3_1303 IPR006120 Resolvase, HTH domain YPZ3_1303 IPR012337 Ribonuclease H-like superfamily YPZ3_1303 IPR036397 Ribonuclease H superfamily YPZ3_1303 IPR017894 HTH domain, IS21 transposase-type YPZ3_1304 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPZ3_1304 IPR014031 Beta-ketoacyl synthase, C-terminal YPZ3_1304 IPR014030 Beta-ketoacyl synthase, N-terminal YPZ3_1304 IPR018201 Beta-ketoacyl synthase, active site YPZ3_1304 IPR000794 Beta-ketoacyl synthase YPZ3_1304 IPR016039 Thiolase-like YPZ3_1304 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPZ3_1305 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA YPZ3_1305 IPR029069 HotDog domain superfamily YPZ3_1305 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPZ3_1306 IPR027065 Lon protease YPZ3_1306 IPR008269 Peptidase S16, Lon proteolytic domain YPZ3_1306 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPZ3_1306 IPR041699 Lon protease, AAA domain YPZ3_1306 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_1307 IPR035087 MatP, N-terminal YPZ3_1307 IPR035375 MatP, C-terminal ribbon-helix-helix domain YPZ3_1307 IPR038339 MatP, N-terminal domain superfamily YPZ3_1307 IPR013321 Arc-type ribbon-helix-helix YPZ3_1307 IPR009390 Macrodomain Ter protein, MatP YPZ3_1308 IPR036515 Transposase IS200-like superfamily YPZ3_1308 IPR002686 Transposase IS200-like YPZ3_1309 IPR000498 Outer membrane protein OmpA-like, transmembrane domain YPZ3_1309 IPR002368 Outer membrane protein, OmpA YPZ3_1309 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPZ3_1309 IPR036737 OmpA-like domain superfamily YPZ3_1309 IPR006664 Outer membrane protein, bacterial YPZ3_1309 IPR006690 Outer membrane protein, OmpA-like, conserved site YPZ3_1309 IPR006665 OmpA-like domain YPZ3_1310 IPR004596 Cell division suppressor protein, SulA YPZ3_1310 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1311 IPR007076 TfoX, N-terminal YPZ3_1311 IPR007077 TfoX, C-terminal YPZ3_1311 IPR026256 Transcriptional regulator, TfoX/Sxy-type YPZ3_1312 IPR010020 Integral membrane protein, YccS/YhfK YPZ3_1312 IPR032692 Integral membrane protein YccS, N-terminal YPZ3_1312 IPR010019 Integral membrane protein, YccS YPZ3_1313 IPR005185 Inner membrane component domain YPZ3_1313 IPR031308 Uncharacterised conserved protein UCP028777 YPZ3_1314 IPR000212 DNA helicase, UvrD/REP type YPZ3_1314 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1314 IPR022161 DNA helicase IV, N-terminal domain YPZ3_1314 IPR034739 UvrD/AddA helicase, N-terminal YPZ3_1314 IPR014016 UvrD-like helicase, ATP-binding domain YPZ3_1314 IPR014017 UvrD-like DNA helicase, C-terminal YPZ3_1315 IPR036914 Methylglyoxal synthase-like domain superfamily YPZ3_1315 IPR011607 Methylglyoxal synthase-like domain YPZ3_1315 IPR004363 Methylglyoxal synthase YPZ3_1315 IPR018148 Methylglyoxal synthase, active site YPZ3_1316 IPR018635 Uncharacterised protein family UPF0319 YPZ3_1317 IPR036291 NAD(P)-binding domain superfamily YPZ3_1317 IPR003781 CoA-binding YPZ3_1318 IPR036623 Hemimethylated DNA-binding domain superfamily YPZ3_1318 IPR011722 Hemimethylated DNA-binding domain YPZ3_1318 IPR022866 Heat shock protein HspQ YPZ3_1319 IPR019614 S-adenosylmethionine-dependent methyltransferase YPZ3_1319 IPR002478 PUA domain YPZ3_1319 IPR015947 PUA-like superfamily YPZ3_1319 IPR036974 PUA domain superfamily YPZ3_1319 IPR041532 RlmI, PUA-like domain YPZ3_1319 IPR023542 rRNA large subunit methyltransferase I YPZ3_1319 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_1320 IPR042072 DsrC-like protein, C-terminal domain YPZ3_1320 IPR025526 DsrC-like domain superfamily YPZ3_1320 IPR007453 Sulphur transfer protein DsrC/TusE YPZ3_1323 IPR016169 FAD-binding, type PCMH, subdomain 2 YPZ3_1323 IPR012951 Berberine/berberine-like YPZ3_1323 IPR006093 Oxygen oxidoreductase covalent FAD-binding site YPZ3_1323 IPR016164 FAD-linked oxidase-like, C-terminal YPZ3_1323 IPR016166 FAD-binding domain, PCMH-type YPZ3_1323 IPR036318 FAD-binding, type PCMH-like superfamily YPZ3_1323 IPR006094 FAD linked oxidase, N-terminal YPZ3_1323 IPR016167 FAD-binding, type PCMH, subdomain 1 YPZ3_1324 IPR002347 Short-chain dehydrogenase/reductase SDR YPZ3_1324 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPZ3_1324 IPR011294 3-hydroxybutyrate dehydrogenase YPZ3_1324 IPR036291 NAD(P)-binding domain superfamily YPZ3_1325 IPR029069 HotDog domain superfamily YPZ3_1325 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPZ3_1325 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YPZ3_1326 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPZ3_1326 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPZ3_1326 IPR018201 Beta-ketoacyl synthase, active site YPZ3_1326 IPR014030 Beta-ketoacyl synthase, N-terminal YPZ3_1326 IPR000794 Beta-ketoacyl synthase YPZ3_1326 IPR014031 Beta-ketoacyl synthase, C-terminal YPZ3_1326 IPR016039 Thiolase-like YPZ3_1327 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YPZ3_1327 IPR036291 NAD(P)-binding domain superfamily YPZ3_1327 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPZ3_1327 IPR002347 Short-chain dehydrogenase/reductase SDR YPZ3_1328 IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal YPZ3_1328 IPR016039 Thiolase-like YPZ3_1328 IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain YPZ3_1330 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPZ3_1330 IPR029045 ClpP/crotonase-like domain superfamily YPZ3_1330 IPR001753 Enoyl-CoA hydratase/isomerase YPZ3_1331 IPR002347 Short-chain dehydrogenase/reductase SDR YPZ3_1331 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPZ3_1331 IPR036291 NAD(P)-binding domain superfamily YPZ3_1333 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPZ3_1333 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type YPZ3_1333 IPR024925 Malonyl CoA-acyl carrier protein transacylase YPZ3_1333 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPZ3_1333 IPR014043 Acyl transferase YPZ3_1333 IPR001227 Acyl transferase domain superfamily YPZ3_1338 IPR008722 Outer membrane porin F, N-terminal YPZ3_1338 IPR036737 OmpA-like domain superfamily YPZ3_1338 IPR028974 TSP type-3 repeat YPZ3_1338 IPR006665 OmpA-like domain YPZ3_1338 IPR006664 Outer membrane protein, bacterial YPZ3_1338 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPZ3_1338 IPR006690 Outer membrane protein, OmpA-like, conserved site YPZ3_1340 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1340 IPR041546 ClpA/ClpB, AAA lid domain YPZ3_1340 IPR018368 ClpA/B, conserved site 1 YPZ3_1340 IPR003593 AAA+ ATPase domain YPZ3_1340 IPR003959 ATPase, AAA-type, core YPZ3_1340 IPR004176 Clp, N-terminal YPZ3_1340 IPR001270 ClpA/B family YPZ3_1340 IPR036628 Clp, N-terminal domain superfamily YPZ3_1340 IPR019489 Clp ATPase, C-terminal YPZ3_1340 IPR017729 Type VI secretion system, ATPase ClpV1 YPZ3_1347 IPR038717 Tc1-like transposase, DDE domain YPZ3_1347 IPR009057 Homeobox-like domain superfamily YPZ3_1347 IPR012337 Ribonuclease H-like superfamily YPZ3_1347 IPR025959 Winged helix-turn helix domain YPZ3_1359 IPR003593 AAA+ ATPase domain YPZ3_1359 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1359 IPR003439 ABC transporter-like YPZ3_1359 IPR032781 ABC-transporter extension domain YPZ3_1361 IPR001207 Transposase, mutator type YPZ3_1362 IPR012730 Molybdopterin synthase sulfurylase MoeB YPZ3_1362 IPR000594 THIF-type NAD/FAD binding fold YPZ3_1362 IPR035985 Ubiquitin-activating enzyme YPZ3_1363 IPR036135 MoeA, N-terminal and linker domain superfamily YPZ3_1363 IPR001453 MoaB/Mog domain YPZ3_1363 IPR036425 MoaB/Mog-like domain superfamily YPZ3_1363 IPR008284 Molybdenum cofactor biosynthesis, conserved site YPZ3_1363 IPR036688 MoeA, C-terminal, domain IV superfamily YPZ3_1363 IPR038987 Molybdopterin biosynthesis protein MoeA-like YPZ3_1363 IPR005111 MoeA, C-terminal, domain IV YPZ3_1363 IPR005110 MoeA, N-terminal and linker domain YPZ3_1365 IPR003439 ABC transporter-like YPZ3_1365 IPR003593 AAA+ ATPase domain YPZ3_1365 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1365 IPR017871 ABC transporter, conserved site YPZ3_1366 IPR022824 Multidrug resistance protein MdtA YPZ3_1366 IPR006143 RND efflux pump, membrane fusion protein YPZ3_1366 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPZ3_1368 IPR000801 Putative esterase YPZ3_1368 IPR014186 S-formylglutathione hydrolase YPZ3_1368 IPR029058 Alpha/Beta hydrolase fold YPZ3_1369 IPR020843 Polyketide synthase, enoylreductase domain YPZ3_1369 IPR036291 NAD(P)-binding domain superfamily YPZ3_1369 IPR014183 Alcohol dehydrogenase class III YPZ3_1369 IPR013149 Alcohol dehydrogenase, C-terminal YPZ3_1369 IPR013154 Alcohol dehydrogenase, N-terminal YPZ3_1369 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site YPZ3_1369 IPR011032 GroES-like superfamily YPZ3_1370 IPR005119 LysR, substrate-binding YPZ3_1370 IPR000847 Transcription regulator HTH, LysR YPZ3_1370 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1370 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1371 IPR010645 Uncharacterised MFS-type transporter YbfB YPZ3_1371 IPR036259 MFS transporter superfamily YPZ3_1372 IPR020602 GTP cyclohydrolase I domain YPZ3_1372 IPR018234 GTP cyclohydrolase I, conserved site YPZ3_1372 IPR001474 GTP cyclohydrolase I YPZ3_1373 IPR007349 Domain of unknown function DUF418 YPZ3_1374 IPR028082 Periplasmic binding protein-like I YPZ3_1374 IPR025997 Periplasmic binding protein YPZ3_1375 IPR003593 AAA+ ATPase domain YPZ3_1375 IPR003439 ABC transporter-like YPZ3_1375 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1375 IPR015862 ABC transporter, galactose import, MglA YPZ3_1375 IPR017871 ABC transporter, conserved site YPZ3_1376 IPR001851 ABC transporter, permease YPZ3_1376 IPR030158 Galactoside transport system permease protein MglC YPZ3_1377 IPR003848 Domain of unknown function DUF218 YPZ3_1377 IPR023604 Uncharacterised protein family SanA YPZ3_1378 IPR015884 Malic enzyme, conserved site YPZ3_1378 IPR012301 Malic enzyme, N-terminal domain YPZ3_1378 IPR037062 Malic enzyme, N-terminal domain superfamily YPZ3_1378 IPR036291 NAD(P)-binding domain superfamily YPZ3_1378 IPR023667 NAD-dependent malic enzyme, proteobacteria YPZ3_1378 IPR012302 Malic enzyme, NAD-binding YPZ3_1378 IPR001891 Malic oxidoreductase YPZ3_1379 IPR016192 APOBEC/CMP deaminase, zinc-binding YPZ3_1379 IPR002125 Cytidine and deoxycytidylate deaminase domain YPZ3_1379 IPR006263 Cytidine deaminase, homodimeric YPZ3_1379 IPR016193 Cytidine deaminase-like YPZ3_1379 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain YPZ3_1379 IPR020797 Cytidine deaminase, bacteria YPZ3_1380 IPR005261 Conserved hypothetical protein CHP00659 YPZ3_1380 IPR007300 CidB/LrgB family YPZ3_1381 IPR005538 LrgA/CidA family YPZ3_1381 IPR022957 Uncharacterised protein family UPF0299 YPZ3_1382 IPR020846 Major facilitator superfamily domain YPZ3_1382 IPR036259 MFS transporter superfamily YPZ3_1382 IPR011701 Major facilitator superfamily YPZ3_1386 IPR002686 Transposase IS200-like YPZ3_1386 IPR036515 Transposase IS200-like superfamily YPZ3_1387 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal YPZ3_1387 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPZ3_1387 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPZ3_1387 IPR002547 tRNA-binding domain YPZ3_1387 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_1387 IPR015413 Methionyl/Leucyl tRNA synthetase YPZ3_1387 IPR033911 Methioninyl-tRNA synthetase core domain YPZ3_1387 IPR029038 Methionyl-tRNA synthetase, Zn-domain YPZ3_1387 IPR012340 Nucleic acid-binding, OB-fold YPZ3_1387 IPR014758 Methionyl-tRNA synthetase YPZ3_1387 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain YPZ3_1387 IPR023458 Methionine-tRNA ligase, type 1 YPZ3_1388 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1388 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 YPZ3_1388 IPR000808 Mrp, conserved site YPZ3_1388 IPR019591 Mrp/NBP35 ATP-binding protein YPZ3_1388 IPR034904 Fe-S cluster assembly domain superfamily YPZ3_1389 IPR006083 Phosphoribulokinase/uridine kinase YPZ3_1389 IPR026008 Uridine kinase YPZ3_1389 IPR000764 Uridine kinase-like YPZ3_1389 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1390 IPR033704 dUTPase, trimeric YPZ3_1390 IPR036157 dUTPase-like superfamily YPZ3_1390 IPR029054 dUTPase-like YPZ3_1390 IPR011962 dCTP deaminase YPZ3_1391 IPR007844 AsmA YPZ3_1392 IPR036318 FAD-binding, type PCMH-like superfamily YPZ3_1392 IPR000644 CBS domain YPZ3_1392 IPR016169 FAD-binding, type PCMH, subdomain 2 YPZ3_1392 IPR005496 Integral membrane protein TerC YPZ3_1392 IPR005170 Transporter-associated domain YPZ3_1393 IPR008090 Ferric iron reductase YPZ3_1393 IPR022770 Ferric iron reductase FhuF domain YPZ3_1393 IPR024726 Ferric iron reductase, C-terminal YPZ3_1394 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_1394 IPR002129 Pyridoxal phosphate-dependent decarboxylase YPZ3_1394 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_1394 IPR021115 Pyridoxal-phosphate binding site YPZ3_1395 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_1395 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YPZ3_1397 IPR022770 Ferric iron reductase FhuF domain YPZ3_1397 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPZ3_1397 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPZ3_1398 IPR003593 AAA+ ATPase domain YPZ3_1398 IPR003439 ABC transporter-like YPZ3_1398 IPR017871 ABC transporter, conserved site YPZ3_1398 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1399 IPR000522 ABC transporter, permease protein, BtuC-like YPZ3_1399 IPR037294 ABC transporter, BtuC-like YPZ3_1400 IPR000522 ABC transporter, permease protein, BtuC-like YPZ3_1400 IPR037294 ABC transporter, BtuC-like YPZ3_1401 IPR002491 ABC transporter periplasmic binding domain YPZ3_1402 IPR011662 Secretin/TonB, short N-terminal domain YPZ3_1402 IPR000531 TonB-dependent receptor-like, beta-barrel YPZ3_1402 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPZ3_1402 IPR010105 TonB-dependent siderophore receptor YPZ3_1402 IPR012910 TonB-dependent receptor, plug domain YPZ3_1402 IPR010917 TonB-dependent receptor, conserved site YPZ3_1402 IPR039423 TonB-dependent receptor-like YPZ3_1402 IPR037066 TonB-dependent receptor, plug domain superfamily YPZ3_1403 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPZ3_1403 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPZ3_1403 IPR022770 Ferric iron reductase FhuF domain YPZ3_1404 IPR029044 Nucleotide-diphospho-sugar transferases YPZ3_1404 IPR005835 Nucleotidyl transferase domain YPZ3_1404 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type YPZ3_1405 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type YPZ3_1405 IPR029044 Nucleotide-diphospho-sugar transferases YPZ3_1405 IPR005835 Nucleotidyl transferase domain YPZ3_1406 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating YPZ3_1406 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding YPZ3_1406 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPZ3_1406 IPR006184 6-phosphogluconate-binding site YPZ3_1406 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPZ3_1406 IPR006114 6-phosphogluconate dehydrogenase, C-terminal YPZ3_1406 IPR036291 NAD(P)-binding domain superfamily YPZ3_1406 IPR006183 6-phosphogluconate dehydrogenase YPZ3_1407 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily YPZ3_1407 IPR023019 Histidine biosynthesis bifunctional protein HisIE YPZ3_1407 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like YPZ3_1407 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase YPZ3_1407 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain YPZ3_1408 IPR013785 Aldolase-type TIM barrel YPZ3_1408 IPR011060 Ribulose-phosphate binding barrel YPZ3_1408 IPR004651 Histidine biosynthesis, HisF YPZ3_1408 IPR006062 Histidine biosynthesis YPZ3_1409 IPR011060 Ribulose-phosphate binding barrel YPZ3_1409 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YPZ3_1409 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA YPZ3_1409 IPR006062 Histidine biosynthesis YPZ3_1409 IPR013785 Aldolase-type TIM barrel YPZ3_1410 IPR010139 Imidazole glycerol phosphate synthase, subunit H YPZ3_1410 IPR017926 Glutamine amidotransferase YPZ3_1410 IPR029062 Class I glutamine amidotransferase-like YPZ3_1411 IPR006549 HAD-superfamily hydrolase,subfamily IIIA YPZ3_1411 IPR036412 HAD-like superfamily YPZ3_1411 IPR006543 Histidinol-phosphate phosphatase YPZ3_1411 IPR000807 Imidazoleglycerol-phosphate dehydratase YPZ3_1411 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site YPZ3_1411 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_1411 IPR023214 HAD superfamily YPZ3_1411 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily YPZ3_1411 IPR005954 Histidinol-phosphatase YPZ3_1411 IPR020566 Histidine biosynthesis bifunctional protein HisB YPZ3_1412 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPZ3_1412 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_1412 IPR005861 Histidinol-phosphate aminotransferase family YPZ3_1412 IPR004839 Aminotransferase, class I/classII YPZ3_1412 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_1412 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_1413 IPR001692 Histidinol dehydrogenase, conserved site YPZ3_1413 IPR016161 Aldehyde/histidinol dehydrogenase YPZ3_1413 IPR012131 Histidinol dehydrogenase YPZ3_1413 IPR022695 Histidinol dehydrogenase, monofunctional YPZ3_1414 IPR020621 ATP phosphoribosyltransferase HisG, long form YPZ3_1414 IPR001348 ATP phosphoribosyltransferase HisG YPZ3_1414 IPR018198 ATP phosphoribosyltransferase, conserved site YPZ3_1414 IPR013820 ATP phosphoribosyltransferase, catalytic domain YPZ3_1414 IPR013115 Histidine biosynthesis HisG, C-terminal YPZ3_1414 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPZ3_1414 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPZ3_1415 IPR001509 NAD-dependent epimerase/dehydratase YPZ3_1415 IPR036291 NAD(P)-binding domain superfamily YPZ3_1417 IPR001851 ABC transporter, permease YPZ3_1418 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1418 IPR003593 AAA+ ATPase domain YPZ3_1418 IPR015861 ABC transporter, ribose import, RbsA YPZ3_1418 IPR017871 ABC transporter, conserved site YPZ3_1418 IPR003439 ABC transporter-like YPZ3_1419 IPR003439 ABC transporter-like YPZ3_1419 IPR003593 AAA+ ATPase domain YPZ3_1419 IPR015861 ABC transporter, ribose import, RbsA YPZ3_1419 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1419 IPR017871 ABC transporter, conserved site YPZ3_1420 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YPZ3_1420 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPZ3_1420 IPR016205 Glycerol dehydrogenase YPZ3_1421 IPR002293 Amino acid/polyamine transporter I YPZ3_1422 IPR013520 Exonuclease, RNase T/DNA polymerase III YPZ3_1422 IPR023607 Exodeoxyribonuclease I YPZ3_1422 IPR034748 Exonuclease I, C-terminal alpha-helical domain YPZ3_1422 IPR034747 Exonuclease I, SH3-like domain YPZ3_1422 IPR038649 Exonuclease I, SH3-like domain superfamily YPZ3_1422 IPR013620 Exodeoxyribonuclease I, C-terminal YPZ3_1422 IPR012337 Ribonuclease H-like superfamily YPZ3_1422 IPR036397 Ribonuclease H superfamily YPZ3_1424 IPR007458 Protein of unknown function DUF496 YPZ3_1425 IPR001207 Transposase, mutator type YPZ3_1426 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPZ3_1426 IPR013783 Immunoglobulin-like fold YPZ3_1426 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPZ3_1426 IPR008964 Invasin/intimin cell-adhesion fragments YPZ3_1426 IPR015217 Invasin, domain 3 YPZ3_1426 IPR018392 LysM domain YPZ3_1426 IPR024519 Inverse autotransporter, beta-domain YPZ3_1426 IPR022409 PKD/Chitinase domain YPZ3_1426 IPR038177 Inverse autotransporter, beta-domain superfamily YPZ3_1427 IPR036259 MFS transporter superfamily YPZ3_1427 IPR020846 Major facilitator superfamily domain YPZ3_1427 IPR011701 Major facilitator superfamily YPZ3_1428 IPR007263 Protein of unknown function DUF393 YPZ3_1429 IPR036291 NAD(P)-binding domain superfamily YPZ3_1429 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPZ3_1429 IPR002347 Short-chain dehydrogenase/reductase SDR YPZ3_1430 IPR011234 Fumarylacetoacetase-like, C-terminal YPZ3_1430 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPZ3_1431 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YPZ3_1431 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPZ3_1431 IPR034610 L-fuconate dehydratase YPZ3_1431 IPR029065 Enolase C-terminal domain-like YPZ3_1431 IPR036849 Enolase-like, C-terminal domain superfamily YPZ3_1431 IPR029017 Enolase-like, N-terminal YPZ3_1432 IPR020920 L-lactate dehydrogenase, bacterial YPZ3_1432 IPR000262 FMN-dependent dehydrogenase YPZ3_1432 IPR013785 Aldolase-type TIM barrel YPZ3_1432 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent YPZ3_1432 IPR037396 FMN hydroxy acid dehydrogenase domain YPZ3_1432 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site YPZ3_1433 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail YPZ3_1433 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_1433 IPR023437 Argininosuccinate synthase, type 2 subfamily YPZ3_1433 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body YPZ3_1433 IPR018223 Argininosuccinate synthase, conserved site YPZ3_1433 IPR001518 Argininosuccinate synthase YPZ3_1434 IPR002528 Multi antimicrobial extrusion protein YPZ3_1436 IPR037950 Peptidoglycan deacetylase PgdA-like YPZ3_1436 IPR002509 NodB homology domain YPZ3_1436 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPZ3_1438 IPR018636 Protein of unknown function DUF2058 YPZ3_1439 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_1439 IPR000792 Transcription regulator LuxR, C-terminal YPZ3_1439 IPR001789 Signal transduction response regulator, receiver domain YPZ3_1439 IPR011006 CheY-like superfamily YPZ3_1440 IPR004681 TRAP transporter large membrane protein DctM YPZ3_1440 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit YPZ3_1442 IPR038404 TRAP transporter solute receptor DctP superfamily YPZ3_1442 IPR018389 TRAP transporter solute receptor DctP/TeaA YPZ3_1442 IPR004682 TRAP transporter solute receptor, DctP family YPZ3_1443 IPR008278 4'-phosphopantetheinyl transferase domain YPZ3_1443 IPR037143 4'-phosphopantetheinyl transferase domain superfamily YPZ3_1443 IPR041354 4'-phosphopantetheinyl transferase, N-terminal domain YPZ3_1443 IPR003542 Enterobactin synthetase-like, component D YPZ3_1444 IPR017853 Glycoside hydrolase superfamily YPZ3_1444 IPR031704 Glycosyl hydrolase family 36, N-terminal YPZ3_1444 IPR031705 Glycosyl hydrolase family 36, C-terminal YPZ3_1444 IPR013785 Aldolase-type TIM barrel YPZ3_1444 IPR000111 Glycoside hydrolase family 27/36, conserved site YPZ3_1444 IPR038417 Alpha-galactosidase, N-terminal domain superfamily YPZ3_1444 IPR002252 Glycoside hydrolase family 36 YPZ3_1445 IPR036259 MFS transporter superfamily YPZ3_1445 IPR020846 Major facilitator superfamily domain YPZ3_1445 IPR018457 LacY/RafB permease family, conserved site YPZ3_1445 IPR000576 LacY/RafB permease family YPZ3_1446 IPR001207 Transposase, mutator type YPZ3_1447 IPR036412 HAD-like superfamily YPZ3_1447 IPR006439 HAD hydrolase, subfamily IA YPZ3_1447 IPR041492 Haloacid dehalogenase-like hydrolase YPZ3_1447 IPR023214 HAD superfamily YPZ3_1447 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPZ3_1448 IPR025229 YniB-like protein YPZ3_1450 IPR001626 ABC transporter, TroCD-like YPZ3_1450 IPR037294 ABC transporter, BtuC-like YPZ3_1451 IPR037294 ABC transporter, BtuC-like YPZ3_1451 IPR001626 ABC transporter, TroCD-like YPZ3_1452 IPR003593 AAA+ ATPase domain YPZ3_1452 IPR003439 ABC transporter-like YPZ3_1452 IPR017871 ABC transporter, conserved site YPZ3_1452 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1453 IPR006127 Periplasmic solute binding protein, ZnuA-like YPZ3_1453 IPR006128 Adhesion lipoprotein YPZ3_1453 IPR006129 Adhesin B YPZ3_1454 IPR023346 Lysozyme-like domain superfamily YPZ3_1454 IPR023946 Endo-type membrane-bound lytic murein transglycosylase A YPZ3_1454 IPR000189 Prokaryotic transglycosylase, active site YPZ3_1454 IPR008258 Transglycosylase SLT domain 1 YPZ3_1455 IPR002771 Multiple antibiotic resistance (MarC)-related YPZ3_1456 IPR012675 Beta-grasp domain superfamily YPZ3_1456 IPR012947 Threonyl/alanyl tRNA synthetase, SAD YPZ3_1456 IPR033728 Threonine-tRNA ligase catalytic core domain YPZ3_1456 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily YPZ3_1456 IPR002320 Threonine-tRNA ligase, class IIa YPZ3_1456 IPR012676 TGS-like YPZ3_1456 IPR004095 TGS YPZ3_1456 IPR036621 Anticodon-binding domain superfamily YPZ3_1456 IPR004154 Anticodon-binding YPZ3_1456 IPR006195 Aminoacyl-tRNA synthetase, class II YPZ3_1456 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) YPZ3_1457 IPR019815 Translation initiation factor 3, C-terminal YPZ3_1457 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily YPZ3_1457 IPR019813 Translation initiation factor 3, conserved site YPZ3_1457 IPR001288 Translation initiation factor 3 YPZ3_1457 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily YPZ3_1457 IPR019814 Translation initiation factor 3, N-terminal YPZ3_1458 IPR005813 Ribosomal protein L20 YPZ3_1458 IPR035566 Ribosomal protein L20, C-terminal YPZ3_1459 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit YPZ3_1459 IPR002319 Phenylalanyl-tRNA synthetase YPZ3_1459 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm YPZ3_1459 IPR006195 Aminoacyl-tRNA synthetase, class II YPZ3_1459 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial YPZ3_1459 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal YPZ3_1460 IPR009061 Putative DNA-binding domain superfamily YPZ3_1460 IPR012340 Nucleic acid-binding, OB-fold YPZ3_1460 IPR005146 B3/B4 tRNA-binding domain YPZ3_1460 IPR005121 Ferrodoxin-fold anticodon-binding domain YPZ3_1460 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily YPZ3_1460 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit YPZ3_1460 IPR002547 tRNA-binding domain YPZ3_1460 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain YPZ3_1460 IPR005147 tRNA synthetase, B5-domain YPZ3_1460 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 YPZ3_1460 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain YPZ3_1462 IPR037294 ABC transporter, BtuC-like YPZ3_1462 IPR000522 ABC transporter, permease protein, BtuC-like YPZ3_1462 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC YPZ3_1463 IPR033674 Thioredoxin/glutathione peroxidase BtuE YPZ3_1463 IPR000889 Glutathione peroxidase YPZ3_1463 IPR029759 Glutathione peroxidase active site YPZ3_1463 IPR029760 Glutathione peroxidase conserved site YPZ3_1463 IPR036249 Thioredoxin-like superfamily YPZ3_1464 IPR003593 AAA+ ATPase domain YPZ3_1464 IPR003439 ABC transporter-like YPZ3_1464 IPR017871 ABC transporter, conserved site YPZ3_1464 IPR023693 ABC transporter, vitamin B12, BtuD YPZ3_1464 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1465 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPZ3_1465 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_1465 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_1465 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_1465 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB YPZ3_1466 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase YPZ3_1466 IPR001173 Glycosyltransferase 2-like YPZ3_1466 IPR029044 Nucleotide-diphospho-sugar transferases YPZ3_1467 IPR036291 NAD(P)-binding domain superfamily YPZ3_1467 IPR011034 Formyl transferase-like, C-terminal domain superfamily YPZ3_1467 IPR036477 Formyl transferase, N-terminal domain superfamily YPZ3_1467 IPR005793 Formyl transferase, C-terminal YPZ3_1467 IPR002376 Formyl transferase, N-terminal YPZ3_1467 IPR021168 Bifunctional polymyxin resistance protein, ArnA YPZ3_1467 IPR001509 NAD-dependent epimerase/dehydratase YPZ3_1468 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPZ3_1468 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable YPZ3_1468 IPR002509 NodB homology domain YPZ3_1469 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase YPZ3_1469 IPR003342 Glycosyl transferase family 39/83 YPZ3_1470 IPR000390 Small multidrug resistance protein family YPZ3_1470 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE YPZ3_1470 IPR000620 EamA domain YPZ3_1471 IPR000390 Small multidrug resistance protein family YPZ3_1471 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF YPZ3_1472 IPR038765 Papain-like cysteine peptidase superfamily YPZ3_1472 IPR000064 Endopeptidase, NLPC/P60 domain YPZ3_1473 IPR004562 Lipoyltransferase/lipoate-protein ligase YPZ3_1473 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain YPZ3_1473 IPR023741 Lipoate-protein ligase A YPZ3_1473 IPR019491 Lipoate protein ligase, C-terminal YPZ3_1474 IPR003846 Protein adenylyltransferase SelO YPZ3_1475 IPR003846 Protein adenylyltransferase SelO YPZ3_1476 IPR006218 DAHP synthetase I/KDSA YPZ3_1476 IPR013785 Aldolase-type TIM barrel YPZ3_1476 IPR006219 DHAP synthase, class 1 YPZ3_1477 IPR005177 Bifunctional kinase-pyrophosphorylase YPZ3_1477 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain superfamily YPZ3_1477 IPR026530 Phosphoenolpyruvate synthase regulatory protein YPZ3_1478 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding YPZ3_1478 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPZ3_1478 IPR006319 Phosphoenolpyruvate synthase YPZ3_1478 IPR040442 Pyruvate kinase-like domain superfamily YPZ3_1478 IPR018274 PEP-utilising enzyme, active site YPZ3_1478 IPR008279 PEP-utilising enzyme, mobile domain YPZ3_1478 IPR000121 PEP-utilising enzyme, C-terminal YPZ3_1478 IPR013815 ATP-grasp fold, subdomain 1 YPZ3_1478 IPR036637 Phosphohistidine domain superfamily YPZ3_1478 IPR023151 PEP-utilising enzyme, conserved site YPZ3_1479 IPR002549 Transmembrane protein TqsA-like YPZ3_1480 IPR006094 FAD linked oxidase, N-terminal YPZ3_1480 IPR016164 FAD-linked oxidase-like, C-terminal YPZ3_1480 IPR036318 FAD-binding, type PCMH-like superfamily YPZ3_1480 IPR016166 FAD-binding domain, PCMH-type YPZ3_1480 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPZ3_1480 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_1480 IPR009051 Alpha-helical ferredoxin YPZ3_1480 IPR004113 FAD-linked oxidase, C-terminal YPZ3_1481 IPR029069 HotDog domain superfamily YPZ3_1481 IPR006683 Thioesterase domain YPZ3_1481 IPR003736 Phenylacetic acid degradation-related domain YPZ3_1481 IPR030863 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, MenI YPZ3_1482 IPR011298 FeS assembly scaffold SufA YPZ3_1482 IPR016092 FeS cluster insertion protein YPZ3_1482 IPR035903 HesB-like domain superfamily YPZ3_1482 IPR000361 FeS cluster biogenesis YPZ3_1482 IPR017870 FeS cluster insertion, C-terminal, conserved site YPZ3_1483 IPR037284 SUF system FeS cluster assembly, SufBD superfamily YPZ3_1483 IPR000825 SUF system FeS cluster assembly, SufBD YPZ3_1483 IPR010231 SUF system FeS cluster assembly, SufB YPZ3_1484 IPR003439 ABC transporter-like YPZ3_1484 IPR017871 ABC transporter, conserved site YPZ3_1484 IPR010230 FeS cluster assembly SUF system, ATPase SufC YPZ3_1484 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1484 IPR003593 AAA+ ATPase domain YPZ3_1485 IPR037284 SUF system FeS cluster assembly, SufBD superfamily YPZ3_1485 IPR011542 SUF system FeS cluster assembly, SufD YPZ3_1485 IPR000825 SUF system FeS cluster assembly, SufBD YPZ3_1486 IPR010970 Cysteine desulfurase, SufS YPZ3_1486 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_1486 IPR000192 Aminotransferase class V domain YPZ3_1486 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPZ3_1486 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_1486 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_1487 IPR003808 Fe-S metabolism associated domain, SufE-like YPZ3_1487 IPR023939 Cysteine desulfuration protein SufE YPZ3_1488 IPR041597 L,D-transpeptidase C-terminal domain YPZ3_1488 IPR005490 L,D-transpeptidase catalytic domain YPZ3_1488 IPR018392 LysM domain YPZ3_1488 IPR038063 L,D-transpeptidase catalytic domain-like YPZ3_1489 IPR002611 IstB-like ATP-binding protein YPZ3_1489 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_1489 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1489 IPR001270 ClpA/B family YPZ3_1489 IPR003593 AAA+ ATPase domain YPZ3_1490 IPR006120 Resolvase, HTH domain YPZ3_1490 IPR017894 HTH domain, IS21 transposase-type YPZ3_1490 IPR001584 Integrase, catalytic core YPZ3_1490 IPR012337 Ribonuclease H-like superfamily YPZ3_1490 IPR036397 Ribonuclease H superfamily YPZ3_1492 IPR001697 Pyruvate kinase YPZ3_1492 IPR011037 Pyruvate kinase-like, insert domain superfamily YPZ3_1492 IPR018209 Pyruvate kinase, active site YPZ3_1492 IPR015793 Pyruvate kinase, barrel YPZ3_1492 IPR015795 Pyruvate kinase, C-terminal YPZ3_1492 IPR036918 Pyruvate kinase, C-terminal domain superfamily YPZ3_1492 IPR015806 Pyruvate kinase, insert domain superfamily YPZ3_1492 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPZ3_1492 IPR040442 Pyruvate kinase-like domain superfamily YPZ3_1493 IPR002528 Multi antimicrobial extrusion protein YPZ3_1493 IPR022913 Multidrug resistance protein MdtK YPZ3_1494 IPR026017 Lumazine-binding domain YPZ3_1494 IPR001783 Lumazine-binding protein YPZ3_1494 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily YPZ3_1494 IPR017938 Riboflavin synthase-like beta-barrel YPZ3_1495 IPR003333 Mycolic acid cyclopropane synthase YPZ3_1495 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_1496 IPR011701 Major facilitator superfamily YPZ3_1496 IPR020846 Major facilitator superfamily domain YPZ3_1496 IPR036259 MFS transporter superfamily YPZ3_1496 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YPZ3_1497 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1497 IPR005119 LysR, substrate-binding YPZ3_1497 IPR000847 Transcription regulator HTH, LysR YPZ3_1497 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1498 IPR000843 LacI-type HTH domain YPZ3_1498 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_1498 IPR028082 Periplasmic binding protein-like I YPZ3_1498 IPR023588 Transcription regulator HTH, PurR YPZ3_1499 IPR001189 Manganese/iron superoxide dismutase YPZ3_1499 IPR019831 Manganese/iron superoxide dismutase, N-terminal YPZ3_1499 IPR019832 Manganese/iron superoxide dismutase, C-terminal YPZ3_1499 IPR019833 Manganese/iron superoxide dismutase, binding site YPZ3_1499 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily YPZ3_1499 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily YPZ3_1500 IPR000064 Endopeptidase, NLPC/P60 domain YPZ3_1500 IPR038765 Papain-like cysteine peptidase superfamily YPZ3_1501 IPR014434 Monothiol glutaredoxin YPZ3_1501 IPR033658 Glutaredoxin, PICOT-like YPZ3_1501 IPR004480 Monothiol glutaredoxin-related YPZ3_1501 IPR002109 Glutaredoxin YPZ3_1501 IPR036249 Thioredoxin-like superfamily YPZ3_1502 IPR036397 Ribonuclease H superfamily YPZ3_1502 IPR012337 Ribonuclease H-like superfamily YPZ3_1502 IPR005987 Ribonuclease T YPZ3_1502 IPR013520 Exonuclease, RNase T/DNA polymerase III YPZ3_1503 IPR018146 Glyoxalase I, conserved site YPZ3_1503 IPR037523 Vicinal oxygen chelate (VOC) domain YPZ3_1503 IPR004361 Glyoxalase I YPZ3_1503 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YPZ3_1503 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPZ3_1504 IPR022385 Rhs repeat-associated core YPZ3_1504 IPR041508 Toxin complex C-like repeat YPZ3_1504 IPR025968 YwqJ-like deaminase YPZ3_1505 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPZ3_1505 IPR013785 Aldolase-type TIM barrel YPZ3_1506 IPR011075 Tetracyclin repressor-like, C-terminal domain YPZ3_1506 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPZ3_1506 IPR001647 DNA-binding HTH domain, TetR-type YPZ3_1506 IPR009057 Homeobox-like domain superfamily YPZ3_1507 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPZ3_1507 IPR012549 Phosphoethanolamine transferase, N-terminal YPZ3_1507 IPR040423 Phosphoethanolamine transferase YPZ3_1507 IPR000917 Sulfatase, N-terminal YPZ3_1508 IPR020471 Aldo/keto reductase YPZ3_1508 IPR036812 NADP-dependent oxidoreductase domain superfamily YPZ3_1508 IPR023210 NADP-dependent oxidoreductase domain YPZ3_1509 IPR023187 Transcriptional regulator MarR-type, conserved site YPZ3_1509 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1509 IPR000835 MarR-type HTH domain YPZ3_1509 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1509 IPR023071 Transcriptional regulator, SlyA YPZ3_1510 IPR008816 Glycine zipper 2TM domain YPZ3_1511 IPR005338 Anhydro-N-acetylmuramic acid kinase YPZ3_1512 IPR018660 C-type lysozyme inhibitor YPZ3_1512 IPR036328 C-type lysozyme inhibitor superfamily YPZ3_1513 IPR000659 Pyridoxamine 5'-phosphate oxidase YPZ3_1513 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative YPZ3_1513 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal YPZ3_1513 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site YPZ3_1513 IPR012349 FMN-binding split barrel YPZ3_1514 IPR002307 Tyrosine-tRNA ligase YPZ3_1514 IPR036986 RNA-binding S4 domain superfamily YPZ3_1514 IPR002942 RNA-binding S4 domain YPZ3_1514 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_1514 IPR024088 Tyrosine-tRNA ligase, bacterial-type YPZ3_1514 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 YPZ3_1514 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPZ3_1514 IPR002305 Aminoacyl-tRNA synthetase, class Ic YPZ3_1515 IPR023685 Pyridoxal kinase PdxY YPZ3_1515 IPR004625 Pyridoxine kinase YPZ3_1515 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase YPZ3_1515 IPR029056 Ribokinase-like YPZ3_1516 IPR004045 Glutathione S-transferase, N-terminal YPZ3_1516 IPR004046 Glutathione S-transferase, C-terminal YPZ3_1516 IPR036249 Thioredoxin-like superfamily YPZ3_1516 IPR040079 Glutathione Transferase family YPZ3_1516 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPZ3_1516 IPR010987 Glutathione S-transferase, C-terminal-like YPZ3_1517 IPR006977 Yip1 domain YPZ3_1518 IPR036259 MFS transporter superfamily YPZ3_1518 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site YPZ3_1518 IPR000109 Proton-dependent oligopeptide transporter family YPZ3_1518 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A YPZ3_1518 IPR005279 Dipeptide/tripeptide permease YPZ3_1519 IPR029032 AhpD-like YPZ3_1520 IPR017871 ABC transporter, conserved site YPZ3_1520 IPR003439 ABC transporter-like YPZ3_1520 IPR003593 AAA+ ATPase domain YPZ3_1520 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1521 IPR003593 AAA+ ATPase domain YPZ3_1521 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1521 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPZ3_1521 IPR003439 ABC transporter-like YPZ3_1522 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1522 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPZ3_1522 IPR035906 MetI-like superfamily YPZ3_1523 IPR035906 MetI-like superfamily YPZ3_1523 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1524 IPR000914 Solute-binding protein family 5 domain YPZ3_1524 IPR023765 Solute-binding protein family 5, conserved site YPZ3_1524 IPR039424 Solute-binding protein family 5 YPZ3_1524 IPR030678 Peptide/nickel binding protein, MppA-type YPZ3_1526 IPR014317 Transcription activator PspF YPZ3_1526 IPR025944 Sigma-54 interaction domain, conserved site YPZ3_1526 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPZ3_1526 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1526 IPR002197 DNA binding HTH domain, Fis-type YPZ3_1526 IPR009057 Homeobox-like domain superfamily YPZ3_1526 IPR003593 AAA+ ATPase domain YPZ3_1526 IPR002078 RNA polymerase sigma factor 54 interaction domain YPZ3_1527 IPR014319 Phage shock protein, PspA YPZ3_1527 IPR007157 PspA/IM30 YPZ3_1528 IPR014320 Phage shock protein, PspC YPZ3_1528 IPR007168 Phage shock protein, PspC, N-terminal YPZ3_1529 IPR007413 Protein of unknown function DUF463, YcjX-like protein YPZ3_1530 IPR021147 Protein of unknown function DUF697 YPZ3_1530 IPR006507 Uncharacterised protein family UPF0283 YPZ3_1533 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPZ3_1533 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPZ3_1533 IPR035965 PAS domain superfamily YPZ3_1533 IPR025944 Sigma-54 interaction domain, conserved site YPZ3_1533 IPR000014 PAS domain YPZ3_1533 IPR030828 TyrR family, helix-turn-helix domain YPZ3_1533 IPR009057 Homeobox-like domain superfamily YPZ3_1533 IPR002078 RNA polymerase sigma factor 54 interaction domain YPZ3_1533 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1533 IPR003593 AAA+ ATPase domain YPZ3_1533 IPR002912 ACT domain YPZ3_1534 IPR002686 Transposase IS200-like YPZ3_1534 IPR036515 Transposase IS200-like superfamily YPZ3_1535 IPR036249 Thioredoxin-like superfamily YPZ3_1535 IPR013740 Redoxin YPZ3_1535 IPR002065 Thiol peroxidase Tpx YPZ3_1535 IPR018219 Thiol peroxidase conserved site YPZ3_1535 IPR013766 Thioredoxin domain YPZ3_1536 IPR034603 Dipeptide epimerase YPZ3_1536 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YPZ3_1536 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPZ3_1536 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site YPZ3_1536 IPR029065 Enolase C-terminal domain-like YPZ3_1536 IPR029017 Enolase-like, N-terminal YPZ3_1536 IPR036849 Enolase-like, C-terminal domain superfamily YPZ3_1537 IPR000834 Peptidase M14, carboxypeptidase A YPZ3_1538 IPR000914 Solute-binding protein family 5 domain YPZ3_1538 IPR023765 Solute-binding protein family 5, conserved site YPZ3_1538 IPR030678 Peptide/nickel binding protein, MppA-type YPZ3_1538 IPR039424 Solute-binding protein family 5 YPZ3_1539 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB YPZ3_1539 IPR023714 Zinc transport protein ZntB YPZ3_1541 IPR013830 SGNH hydrolase-type esterase domain YPZ3_1541 IPR036514 SGNH hydrolase superfamily YPZ3_1541 IPR029058 Alpha/Beta hydrolase fold YPZ3_1541 IPR013094 Alpha/beta hydrolase fold-3 YPZ3_1542 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_1542 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal YPZ3_1542 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase YPZ3_1542 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type YPZ3_1543 IPR029061 Thiamin diphosphate-binding fold YPZ3_1543 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPZ3_1543 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPZ3_1543 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_1543 IPR011895 Pyruvate-flavodoxin oxidoreductase YPZ3_1543 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain YPZ3_1543 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily YPZ3_1543 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain YPZ3_1543 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II YPZ3_1543 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPZ3_1543 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal YPZ3_1543 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain YPZ3_1544 IPR000390 Small multidrug resistance protein family YPZ3_1545 IPR003416 MgtC/SapB/SrpB/YhiD family YPZ3_1546 IPR005590 Protein of unknown function DUF333 YPZ3_1547 IPR005184 Domain of unknown function DUF306, Meta/HslJ YPZ3_1547 IPR038670 HslJ-like superfamily YPZ3_1548 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPZ3_1548 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_1548 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPZ3_1548 IPR036291 NAD(P)-binding domain superfamily YPZ3_1548 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPZ3_1549 IPR021730 Dicarboxylate transport YPZ3_1550 IPR008309 Uncharacterised conserved protein UCP025560 YPZ3_1551 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPZ3_1551 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPZ3_1551 IPR000669 Mannitol dehydrogenase YPZ3_1551 IPR013131 Mannitol dehydrogenase, N-terminal YPZ3_1551 IPR036291 NAD(P)-binding domain superfamily YPZ3_1551 IPR013118 Mannitol dehydrogenase, C-terminal YPZ3_1552 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1552 IPR007324 Sugar-binding domain, putative YPZ3_1552 IPR037171 NagB/RpiA transferase-like YPZ3_1552 IPR012318 Crp-type HTH domain YPZ3_1553 IPR003680 Flavodoxin-like fold YPZ3_1553 IPR029039 Flavoprotein-like superfamily YPZ3_1553 IPR023048 NADH-azoreductase, FMN-dependent YPZ3_1554 IPR001650 Helicase, C-terminal YPZ3_1554 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1554 IPR010222 RNA helicase HrpA YPZ3_1554 IPR024590 RNA helicase HrpA, C-terminal YPZ3_1554 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_1554 IPR011709 Domain of unknown function DUF1605 YPZ3_1554 IPR011545 DEAD/DEAH box helicase domain YPZ3_1554 IPR003593 AAA+ ATPase domain YPZ3_1554 IPR007502 Helicase-associated domain YPZ3_1556 IPR033116 Serine proteases, trypsin family, serine active site YPZ3_1556 IPR001254 Serine proteases, trypsin domain YPZ3_1556 IPR008256 Peptidase S1B YPZ3_1556 IPR009003 Peptidase S1, PA clan YPZ3_1556 IPR018114 Serine proteases, trypsin family, histidine active site YPZ3_1557 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPZ3_1557 IPR016174 Di-haem cytochrome, transmembrane YPZ3_1558 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily YPZ3_1558 IPR007372 Lipid/polyisoprenoid-binding, YceI-like YPZ3_1558 IPR023480 Uncharacterised protein family UPF0312/YceI YPZ3_1560 IPR022385 Rhs repeat-associated core YPZ3_1560 IPR025968 YwqJ-like deaminase YPZ3_1560 IPR041508 Toxin complex C-like repeat YPZ3_1562 IPR001333 Peptidase M32, carboxypeptidase Taq YPZ3_1563 IPR003660 HAMP domain YPZ3_1563 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_1563 IPR005467 Histidine kinase domain YPZ3_1563 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_1563 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_1563 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_1563 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_1564 IPR001789 Signal transduction response regulator, receiver domain YPZ3_1564 IPR039420 Transcriptional regulatory protein WalR-like YPZ3_1564 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1564 IPR001867 OmpR/PhoB-type DNA-binding domain YPZ3_1564 IPR011006 CheY-like superfamily YPZ3_1564 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_1566 IPR004754 Amino acid antiporter YPZ3_1566 IPR002293 Amino acid/polyamine transporter I YPZ3_1567 IPR025543 Dodecin-like YPZ3_1567 IPR036275 YdgH-like superfamily YPZ3_1567 IPR025539 YdgH protein YPZ3_1567 IPR010854 Domain of unknown function DUF1471 YPZ3_1568 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain YPZ3_1568 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal YPZ3_1568 IPR036291 NAD(P)-binding domain superfamily YPZ3_1568 IPR026255 NAD(P) transhydrogenase, alpha subunit YPZ3_1568 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal YPZ3_1568 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 YPZ3_1568 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 YPZ3_1569 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPZ3_1569 IPR012136 NADP transhydrogenase, beta subunit YPZ3_1569 IPR034300 NADP transhydrogenase beta-like domain YPZ3_1570 IPR006016 UspA YPZ3_1571 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1571 IPR018335 Transcription regulator HTH, Crp-type, conserved site YPZ3_1571 IPR014710 RmlC-like jelly roll fold YPZ3_1571 IPR012318 Crp-type HTH domain YPZ3_1571 IPR000595 Cyclic nucleotide-binding domain YPZ3_1571 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1571 IPR018490 Cyclic nucleotide-binding-like YPZ3_1572 IPR023546 Methylated-DNA--protein-cysteine methyltransferase YPZ3_1572 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily YPZ3_1572 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1572 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain YPZ3_1572 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site YPZ3_1572 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPZ3_1572 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain YPZ3_1573 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPZ3_1573 IPR018299 Alkaline phosphatase, active site YPZ3_1573 IPR001952 Alkaline phosphatase YPZ3_1576 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPZ3_1576 IPR023214 HAD superfamily YPZ3_1576 IPR041492 Haloacid dehalogenase-like hydrolase YPZ3_1576 IPR006439 HAD hydrolase, subfamily IA YPZ3_1576 IPR036412 HAD-like superfamily YPZ3_1576 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB YPZ3_1577 IPR004789 Acetolactate synthase, small subunit YPZ3_1577 IPR002912 ACT domain YPZ3_1577 IPR039557 AHAS, ACT domain YPZ3_1578 IPR012000 Thiamine pyrophosphate enzyme, central domain YPZ3_1578 IPR029061 Thiamin diphosphate-binding fold YPZ3_1578 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPZ3_1578 IPR000399 TPP-binding enzyme, conserved site YPZ3_1578 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPZ3_1578 IPR039368 Acetolactate synthase large subunit, TPP binding domain YPZ3_1578 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPZ3_1578 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPZ3_1584 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily YPZ3_1584 IPR011271 AMP nucleosidase YPZ3_1584 IPR018953 AMP nucleoside phosphorylase, N-terminal YPZ3_1584 IPR000845 Nucleoside phosphorylase domain YPZ3_1584 IPR035994 Nucleoside phosphorylase superfamily YPZ3_1585 IPR028082 Periplasmic binding protein-like I YPZ3_1585 IPR025997 Periplasmic binding protein YPZ3_1587 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_1587 IPR028082 Periplasmic binding protein-like I YPZ3_1587 IPR000843 LacI-type HTH domain YPZ3_1588 IPR023790 Chloride channel, voltage-gated, ClcB YPZ3_1588 IPR001807 Chloride channel, voltage gated YPZ3_1588 IPR014743 Chloride channel, core YPZ3_1589 IPR004472 Dethiobiotin synthase BioD YPZ3_1589 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1590 IPR000600 ROK family YPZ3_1590 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1590 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1591 IPR005119 LysR, substrate-binding YPZ3_1591 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1591 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1591 IPR000847 Transcription regulator HTH, LysR YPZ3_1592 IPR011701 Major facilitator superfamily YPZ3_1592 IPR020846 Major facilitator superfamily domain YPZ3_1592 IPR036259 MFS transporter superfamily YPZ3_1592 IPR005829 Sugar transporter, conserved site YPZ3_1593 IPR008865 DNA replication terminus site-binding protein YPZ3_1593 IPR036381 Replication terminator Tus, domain 1 YPZ3_1593 IPR036384 Replication terminator Tus superfamily YPZ3_1594 IPR008948 L-Aspartase-like YPZ3_1594 IPR005677 Fumarate hydratase, class II YPZ3_1594 IPR020557 Fumarate lyase, conserved site YPZ3_1594 IPR000362 Fumarate lyase family YPZ3_1594 IPR022761 Fumarate lyase, N-terminal YPZ3_1594 IPR024083 Fumarase/histidase, N-terminal YPZ3_1594 IPR018951 Fumarase C, C-terminal YPZ3_1595 IPR001250 Mannose-6-phosphate isomerase, type I YPZ3_1595 IPR016305 Mannose-6-phosphate isomerase YPZ3_1595 IPR018050 Phosphomannose isomerase, type I, conserved site YPZ3_1595 IPR014710 RmlC-like jelly roll fold YPZ3_1595 IPR011051 RmlC-like cupin domain superfamily YPZ3_1596 IPR010352 Protein of unknown function DUF945 YPZ3_1598 IPR038770 Sodium/solute symporter superfamily YPZ3_1598 IPR016833 Putative sodium bile acid cotransporter YPZ3_1599 IPR004104 Oxidoreductase, C-terminal YPZ3_1599 IPR036291 NAD(P)-binding domain superfamily YPZ3_1599 IPR000683 Oxidoreductase, N-terminal YPZ3_1600 IPR018062 HTH domain AraC-type, conserved site YPZ3_1600 IPR003313 AraC-type arabinose-binding/dimerisation domain YPZ3_1600 IPR020449 Transcription regulator HTH, AraC- type YPZ3_1600 IPR037923 Transcription regulator HTH-like YPZ3_1600 IPR009057 Homeobox-like domain superfamily YPZ3_1600 IPR018060 DNA binding HTH domain, AraC-type YPZ3_1601 IPR001851 ABC transporter, permease YPZ3_1602 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1602 IPR017917 ABC transporter, arabinose import, ATP-binding protein, AraG YPZ3_1602 IPR017871 ABC transporter, conserved site YPZ3_1602 IPR003439 ABC transporter-like YPZ3_1602 IPR003593 AAA+ ATPase domain YPZ3_1603 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPZ3_1603 IPR028082 Periplasmic binding protein-like I YPZ3_1603 IPR026266 L-arabinose-binding periplasmic protein YPZ3_1604 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPZ3_1604 IPR005929 Ribulokinase YPZ3_1605 IPR038583 L-arabinose isomerase, N-terminal domain superfamily YPZ3_1605 IPR004216 L-fucose/L-arabinose isomerase, C-terminal YPZ3_1605 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily YPZ3_1605 IPR003762 L-arabinose isomerase YPZ3_1605 IPR024664 L-arabinose isomerase, C-terminal YPZ3_1606 IPR039395 Peptidase C39-like A YPZ3_1606 IPR010132 ATPase, type I secretion system, HlyB YPZ3_1606 IPR039421 Type I protein exporter YPZ3_1606 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPZ3_1606 IPR011527 ABC transporter type 1, transmembrane domain YPZ3_1606 IPR017871 ABC transporter, conserved site YPZ3_1606 IPR003593 AAA+ ATPase domain YPZ3_1606 IPR003439 ABC transporter-like YPZ3_1606 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1606 IPR005074 Peptidase C39, bacteriocin processing YPZ3_1607 IPR010129 Type I secretion membrane fusion protein, HlyD family YPZ3_1607 IPR006144 Secretion protein HlyD, conserved site YPZ3_1608 IPR010129 Type I secretion membrane fusion protein, HlyD family YPZ3_1608 IPR006144 Secretion protein HlyD, conserved site YPZ3_1608 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPZ3_1609 IPR017871 ABC transporter, conserved site YPZ3_1609 IPR005074 Peptidase C39, bacteriocin processing YPZ3_1609 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1609 IPR039421 Type I protein exporter YPZ3_1609 IPR003593 AAA+ ATPase domain YPZ3_1609 IPR039395 Peptidase C39-like A YPZ3_1609 IPR011527 ABC transporter type 1, transmembrane domain YPZ3_1609 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPZ3_1609 IPR003439 ABC transporter-like YPZ3_1609 IPR010132 ATPase, type I secretion system, HlyB YPZ3_1610 IPR019690 Protein of unknown function DUF2569 YPZ3_1611 IPR003667 NqrDE/RnfAE YPZ3_1611 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA YPZ3_1612 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria YPZ3_1612 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_1612 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB YPZ3_1612 IPR011005 Dihydropteroate synthase-like YPZ3_1612 IPR007202 4Fe-4S domain YPZ3_1612 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPZ3_1613 IPR009051 Alpha-helical ferredoxin YPZ3_1613 IPR019554 Soluble ligand binding domain YPZ3_1613 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC YPZ3_1613 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain YPZ3_1613 IPR026902 RnfC Barrel sandwich hybrid domain YPZ3_1613 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPZ3_1613 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily YPZ3_1613 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_1614 IPR010499 Bacterial transcription activator, effector binding YPZ3_1614 IPR020449 Transcription regulator HTH, AraC- type YPZ3_1614 IPR011256 Regulatory factor, effector binding domain superfamily YPZ3_1614 IPR018062 HTH domain AraC-type, conserved site YPZ3_1614 IPR018060 DNA binding HTH domain, AraC-type YPZ3_1614 IPR029442 GyrI-like small molecule binding domain YPZ3_1614 IPR009057 Homeobox-like domain superfamily YPZ3_1615 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D YPZ3_1615 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD YPZ3_1616 IPR007329 FMN-binding YPZ3_1616 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG YPZ3_1617 IPR010968 Ion-translocating oxidoreductase complex subunit E YPZ3_1617 IPR003667 NqrDE/RnfAE YPZ3_1618 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal YPZ3_1618 IPR005759 Endonuclease III YPZ3_1618 IPR004036 Endonuclease III-like, conserved site-2 YPZ3_1618 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif YPZ3_1618 IPR004035 Endonuclease III, iron-sulphur binding site YPZ3_1618 IPR003265 HhH-GPD domain YPZ3_1618 IPR000445 Helix-hairpin-helix motif YPZ3_1618 IPR011257 DNA glycosylase YPZ3_1619 IPR036291 NAD(P)-binding domain superfamily YPZ3_1619 IPR001509 NAD-dependent epimerase/dehydratase YPZ3_1620 IPR011701 Major facilitator superfamily YPZ3_1620 IPR020846 Major facilitator superfamily domain YPZ3_1620 IPR036259 MFS transporter superfamily YPZ3_1621 IPR011129 Cold shock domain YPZ3_1621 IPR003029 S1 domain YPZ3_1621 IPR004476 Ribonuclease II/ribonuclease R YPZ3_1621 IPR022966 Ribonuclease II/R, conserved site YPZ3_1621 IPR001900 Ribonuclease II/R YPZ3_1621 IPR013223 Ribonuclease B, N-terminal OB domain YPZ3_1621 IPR011804 Ribonuclease II YPZ3_1621 IPR040476 RNase II/RNase R, cold shock domain YPZ3_1621 IPR012340 Nucleic acid-binding, OB-fold YPZ3_1622 IPR025299 CstA, C-terminal domain YPZ3_1622 IPR003706 CstA, N-terminal domain YPZ3_1623 IPR007423 Selenoprotein, putative YPZ3_1624 IPR013785 Aldolase-type TIM barrel YPZ3_1624 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase YPZ3_1624 IPR033919 Transaldolase/Fructose-6-phosphate aldolase, archaeal/bacterial YPZ3_1624 IPR018225 Transaldolase, active site YPZ3_1624 IPR023001 Fructose-6-phosphate aldolase YPZ3_1624 IPR001585 Transaldolase/Fructose-6-phosphate aldolase YPZ3_1625 IPR004661 L-ribulose-5-phosphate 4-epimerase YPZ3_1625 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPZ3_1625 IPR001303 Class II aldolase/adducin N-terminal YPZ3_1625 IPR033748 L-ribulose-5-phosphate 4-epimerase AraD YPZ3_1626 IPR001950 SUI1 domain YPZ3_1626 IPR005872 Archaeal/bacterial translation initiation factor SUI1 YPZ3_1626 IPR036877 SUI1 domain superfamily YPZ3_1627 IPR013785 Aldolase-type TIM barrel YPZ3_1627 IPR018089 Orotidine 5'-phosphate decarboxylase, active site YPZ3_1627 IPR001754 Orotidine 5'-phosphate decarboxylase domain YPZ3_1627 IPR011060 Ribulose-phosphate binding barrel YPZ3_1627 IPR014732 Orotidine 5'-phosphate decarboxylase YPZ3_1628 IPR011990 Tetratricopeptide-like helical domain superfamily YPZ3_1628 IPR030865 Lipopolysaccharide assembly protein B YPZ3_1628 IPR041166 LapB, rubredoxin metal binding domain YPZ3_1628 IPR013026 Tetratricopeptide repeat-containing domain YPZ3_1628 IPR019734 Tetratricopeptide repeat YPZ3_1629 IPR032906 Lipopolysaccharide assembly protein A YPZ3_1629 IPR010445 Lipopolysaccharide assembly protein A domain YPZ3_1630 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YPZ3_1630 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPZ3_1631 IPR032677 GTP cyclohydrolase II YPZ3_1631 IPR000926 GTP cyclohydrolase II, RibA YPZ3_1631 IPR036144 RibA-like superfamily YPZ3_1632 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain YPZ3_1632 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPZ3_1632 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain YPZ3_1632 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPZ3_1632 IPR006249 Aconitase/Iron-responsive element-binding protein 2 YPZ3_1632 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPZ3_1632 IPR036008 Aconitase, iron-sulfur domain YPZ3_1634 IPR000847 Transcription regulator HTH, LysR YPZ3_1634 IPR005119 LysR, substrate-binding YPZ3_1634 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1634 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1635 IPR003601 DNA topoisomerase, type IA, domain 2 YPZ3_1635 IPR023406 DNA topoisomerase, type IA, active site YPZ3_1635 IPR034149 DNA topoisomerase 1, TOPRIM domain YPZ3_1635 IPR028612 DNA topoisomerase I, type IA YPZ3_1635 IPR006171 TOPRIM domain YPZ3_1635 IPR000380 DNA topoisomerase, type IA YPZ3_1635 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type YPZ3_1635 IPR013497 DNA topoisomerase, type IA, central YPZ3_1635 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YPZ3_1635 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YPZ3_1635 IPR013498 DNA topoisomerase, type IA, zn finger YPZ3_1635 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YPZ3_1635 IPR023405 DNA topoisomerase, type IA, core domain YPZ3_1635 IPR003602 DNA topoisomerase, type IA, DNA-binding domain YPZ3_1635 IPR005733 DNA topoisomerase I, bacterial-type YPZ3_1636 IPR013703 Peptidase S49, N-terminal proteobacteria YPZ3_1636 IPR002142 Peptidase S49 YPZ3_1636 IPR029045 ClpP/crotonase-like domain superfamily YPZ3_1637 IPR002347 Short-chain dehydrogenase/reductase SDR YPZ3_1637 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPZ3_1637 IPR036291 NAD(P)-binding domain superfamily YPZ3_1638 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR YPZ3_1638 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1639 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPZ3_1639 IPR002942 RNA-binding S4 domain YPZ3_1639 IPR036986 RNA-binding S4 domain superfamily YPZ3_1639 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPZ3_1639 IPR006145 Pseudouridine synthase, RsuA/RluA YPZ3_1639 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPZ3_1640 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YPZ3_1640 IPR006070 YrdC-like domain YPZ3_1641 IPR016195 Polymerase/histidinol phosphatase-like YPZ3_1641 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPZ3_1641 IPR004013 PHP domain YPZ3_1642 IPR006805 Anthranilate synthase component I, N-terminal YPZ3_1642 IPR015890 Chorismate-utilising enzyme, C-terminal YPZ3_1642 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial YPZ3_1642 IPR005801 ADC synthase YPZ3_1642 IPR019999 Anthranilate synthase component I-like YPZ3_1643 IPR017926 Glutamine amidotransferase YPZ3_1643 IPR029062 Class I glutamine amidotransferase-like YPZ3_1643 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain YPZ3_1644 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily YPZ3_1644 IPR000312 Glycosyl transferase, family 3 YPZ3_1644 IPR005940 Anthranilate phosphoribosyl transferase YPZ3_1644 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily YPZ3_1644 IPR017459 Glycosyl transferase family 3, N-terminal domain YPZ3_1645 IPR011060 Ribulose-phosphate binding barrel YPZ3_1645 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) YPZ3_1645 IPR001468 Indole-3-glycerol phosphate synthase, conserved site YPZ3_1645 IPR013798 Indole-3-glycerol phosphate synthase YPZ3_1645 IPR013785 Aldolase-type TIM barrel YPZ3_1646 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPZ3_1646 IPR023026 Tryptophan synthase beta chain/beta chain-like YPZ3_1646 IPR006654 Tryptophan synthase, beta chain YPZ3_1646 IPR001926 Pyridoxal-phosphate dependent enzyme YPZ3_1646 IPR006653 Tryptophan synthase, beta chain, conserved site YPZ3_1647 IPR002028 Tryptophan synthase, alpha chain YPZ3_1647 IPR018204 Tryptophan synthase, alpha chain, active site YPZ3_1647 IPR013785 Aldolase-type TIM barrel YPZ3_1647 IPR011060 Ribulose-phosphate binding barrel YPZ3_1649 IPR005618 Outer membrane protein, OmpW YPZ3_1649 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPZ3_1650 IPR009627 Uncharacterised protein family UPF0259 YPZ3_1653 IPR006008 Intracellular septation protein A YPZ3_1654 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase YPZ3_1654 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain YPZ3_1654 IPR029069 HotDog domain superfamily YPZ3_1654 IPR006683 Thioesterase domain YPZ3_1655 IPR001207 Transposase, mutator type YPZ3_1656 IPR003538 Gram-negative bacterial TonB protein YPZ3_1656 IPR037682 TonB, C-terminal YPZ3_1656 IPR006260 TonB/TolA, C-terminal YPZ3_1657 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPZ3_1657 IPR027385 Outer membrane protein beta-barrel domain YPZ3_1657 IPR000758 Virulence-related outer membrane protein YPZ3_1658 IPR030840 Cardiolipin synthase A YPZ3_1658 IPR001736 Phospholipase D/Transphosphatidylase YPZ3_1658 IPR027379 Cardiolipin synthase N-terminal YPZ3_1658 IPR025202 Phospholipase D-like domain YPZ3_1658 IPR022924 Cardiolipin synthase YPZ3_1659 IPR036763 Putative dsDNA mimic superfamily YPZ3_1659 IPR007376 dsDNA mimic, putative YPZ3_1660 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1660 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPZ3_1660 IPR017871 ABC transporter, conserved site YPZ3_1660 IPR003439 ABC transporter-like YPZ3_1660 IPR003593 AAA+ ATPase domain YPZ3_1661 IPR003593 AAA+ ATPase domain YPZ3_1661 IPR003439 ABC transporter-like YPZ3_1661 IPR017871 ABC transporter, conserved site YPZ3_1661 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1661 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPZ3_1662 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1662 IPR035906 MetI-like superfamily YPZ3_1662 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPZ3_1663 IPR035906 MetI-like superfamily YPZ3_1663 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1664 IPR030678 Peptide/nickel binding protein, MppA-type YPZ3_1664 IPR039424 Solute-binding protein family 5 YPZ3_1664 IPR023765 Solute-binding protein family 5, conserved site YPZ3_1664 IPR000914 Solute-binding protein family 5 domain YPZ3_1665 IPR002771 Multiple antibiotic resistance (MarC)-related YPZ3_1666 IPR015590 Aldehyde dehydrogenase domain YPZ3_1666 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase YPZ3_1666 IPR016162 Aldehyde dehydrogenase, N-terminal YPZ3_1666 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPZ3_1666 IPR016161 Aldehyde/histidinol dehydrogenase YPZ3_1666 IPR039697 Iron-type alcohol dehydrogenase-like YPZ3_1666 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YPZ3_1666 IPR016163 Aldehyde dehydrogenase, C-terminal YPZ3_1666 IPR034789 Bifunctional aldehyde-alcohol dehydrogenase, C-terminal domain YPZ3_1667 IPR001584 Integrase, catalytic core YPZ3_1667 IPR012337 Ribonuclease H-like superfamily YPZ3_1667 IPR036397 Ribonuclease H superfamily YPZ3_1667 IPR006120 Resolvase, HTH domain YPZ3_1667 IPR017894 HTH domain, IS21 transposase-type YPZ3_1668 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_1668 IPR001270 ClpA/B family YPZ3_1668 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1668 IPR003593 AAA+ ATPase domain YPZ3_1668 IPR002611 IstB-like ATP-binding protein YPZ3_1669 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1669 IPR020633 Thymidine kinase, conserved site YPZ3_1669 IPR001267 Thymidine kinase YPZ3_1670 IPR001801 Histone-like protein H-NS YPZ3_1670 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily YPZ3_1670 IPR027444 Histone-like protein H-NS, C-terminal domain YPZ3_1670 IPR027454 Histone-like protein H-NS, N-terminal YPZ3_1671 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal YPZ3_1671 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily YPZ3_1671 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type YPZ3_1671 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal YPZ3_1671 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation YPZ3_1671 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPZ3_1671 IPR036291 NAD(P)-binding domain superfamily YPZ3_1671 IPR017476 UDP-glucose/GDP-mannose dehydrogenase YPZ3_1672 IPR039420 Transcriptional regulatory protein WalR-like YPZ3_1672 IPR001789 Signal transduction response regulator, receiver domain YPZ3_1672 IPR028616 Regulator of RpoS YPZ3_1672 IPR036457 PPM-type phosphatase domain superfamily YPZ3_1672 IPR011006 CheY-like superfamily YPZ3_1673 IPR004027 SEC-C motif YPZ3_1673 IPR032710 NTF2-like domain superfamily YPZ3_1673 IPR023006 Uncharacterised protein family UPF0225 YPZ3_1674 IPR004810 Formyltetrahydrofolate deformylase YPZ3_1674 IPR036477 Formyl transferase, N-terminal domain superfamily YPZ3_1674 IPR002376 Formyl transferase, N-terminal YPZ3_1674 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain YPZ3_1674 IPR002912 ACT domain YPZ3_1675 IPR001207 Transposase, mutator type YPZ3_1676 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1676 IPR005119 LysR, substrate-binding YPZ3_1676 IPR000847 Transcription regulator HTH, LysR YPZ3_1676 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1677 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YPZ3_1677 IPR005135 Endonuclease/exonuclease/phosphatase YPZ3_1677 IPR037493 Exodeoxyribonuclease III-like YPZ3_1677 IPR020848 AP endonuclease 1, conserved site YPZ3_1677 IPR004808 AP endonuclease 1 YPZ3_1677 IPR020847 AP endonuclease 1, binding site YPZ3_1678 IPR020476 NUDIX hydrolase YPZ3_1678 IPR015797 NUDIX hydrolase-like domain superfamily YPZ3_1678 IPR020084 NUDIX hydrolase, conserved site YPZ3_1678 IPR000086 NUDIX hydrolase domain YPZ3_1679 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YPZ3_1679 IPR005738 DNA topoisomerase III YPZ3_1679 IPR003602 DNA topoisomerase, type IA, DNA-binding domain YPZ3_1679 IPR023405 DNA topoisomerase, type IA, core domain YPZ3_1679 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YPZ3_1679 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YPZ3_1679 IPR013497 DNA topoisomerase, type IA, central YPZ3_1679 IPR006171 TOPRIM domain YPZ3_1679 IPR003601 DNA topoisomerase, type IA, domain 2 YPZ3_1679 IPR034144 DNA topoisomerase 3-like, TOPRIM domain YPZ3_1679 IPR000380 DNA topoisomerase, type IA YPZ3_1679 IPR023406 DNA topoisomerase, type IA, active site YPZ3_1680 IPR016188 PurM-like, N-terminal domain YPZ3_1680 IPR036921 PurM-like, N-terminal domain superfamily YPZ3_1680 IPR023061 Selenophosphate synthetase, class I YPZ3_1680 IPR004536 Selenophosphate synthetase YPZ3_1680 IPR036676 PurM-like, C-terminal domain superfamily YPZ3_1680 IPR010918 PurM-like, C-terminal domain YPZ3_1681 IPR026021 Putative NAD(P)H nitroreductase YdjA-like YPZ3_1681 IPR000415 Nitroreductase-like YPZ3_1681 IPR029479 Nitroreductase YPZ3_1682 IPR004635 Peptidase S49, SppA YPZ3_1682 IPR029045 ClpP/crotonase-like domain superfamily YPZ3_1682 IPR004634 Peptidase S49, protease IV YPZ3_1682 IPR002142 Peptidase S49 YPZ3_1682 IPR033854 Signal peptide peptidase A YPZ3_1683 IPR006033 Type I L-asparaginase family YPZ3_1683 IPR037152 L-asparaginase, N-terminal domain superfamily YPZ3_1683 IPR036152 Asparaginase/glutaminase-like superfamily YPZ3_1683 IPR041725 Type I (cytosolic) L-asparaginase YPZ3_1683 IPR027473 L-asparaginase, C-terminal YPZ3_1683 IPR027474 L-asparaginase, N-terminal YPZ3_1683 IPR020827 Asparaginase/glutaminase, active site 1 YPZ3_1683 IPR027475 Asparaginase/glutaminase, active site 2 YPZ3_1683 IPR040919 Asparaginase/glutaminase, C-terminal YPZ3_1683 IPR006034 Asparaginase/glutaminase-like YPZ3_1684 IPR036380 Isochorismatase-like superfamily YPZ3_1684 IPR000868 Isochorismatase-like YPZ3_1685 IPR009749 Protein of unknown function DUF1315 YPZ3_1686 IPR028427 Peptide methionine sulfoxide reductase YPZ3_1686 IPR002579 Peptide methionine sulphoxide reductase MrsB YPZ3_1686 IPR011057 Mss4-like superfamily YPZ3_1687 IPR036291 NAD(P)-binding domain superfamily YPZ3_1687 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I YPZ3_1687 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site YPZ3_1687 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YPZ3_1687 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family YPZ3_1687 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YPZ3_1688 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase YPZ3_1688 IPR025532 Glucose-6-phosphate 1-epimerase YPZ3_1688 IPR011013 Galactose mutarotase-like domain superfamily YPZ3_1688 IPR014718 Glycoside hydrolase-type carbohydrate-binding YPZ3_1689 IPR010583 MltA-interacting MipA YPZ3_1690 IPR013153 PrkA AAA domain YPZ3_1690 IPR010650 PrkA C-terminal domain YPZ3_1690 IPR016230 Serine-protein kinase, PrkA YPZ3_1690 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1691 IPR006698 Uncharacterised protein family UPF0229 YPZ3_1693 IPR000847 Transcription regulator HTH, LysR YPZ3_1693 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1693 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1693 IPR005119 LysR, substrate-binding YPZ3_1694 IPR011051 RmlC-like cupin domain superfamily YPZ3_1694 IPR014710 RmlC-like jelly roll fold YPZ3_1694 IPR003829 Pirin, N-terminal domain YPZ3_1694 IPR008778 Pirin, C-terminal domain YPZ3_1694 IPR012093 Pirin YPZ3_1695 IPR023697 Multidrug resistance protein MdtL YPZ3_1695 IPR011701 Major facilitator superfamily YPZ3_1695 IPR020846 Major facilitator superfamily domain YPZ3_1695 IPR036259 MFS transporter superfamily YPZ3_1696 IPR006076 FAD dependent oxidoreductase YPZ3_1696 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_1696 IPR023080 D-amino acid dehydrogenase DadA YPZ3_1697 IPR007390 Sporulation stage V, protein R YPZ3_1698 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1698 IPR014178 Fatty acid response transcription factor FadR YPZ3_1698 IPR028374 FadR, C-terminal domain YPZ3_1698 IPR008920 Transcription regulator FadR/GntR, C-terminal YPZ3_1698 IPR000524 Transcription regulator HTH, GntR YPZ3_1698 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1699 IPR004671 Na+/H+ antiporter NhaB YPZ3_1700 IPR022920 Disulphide bond formation protein DsbB YPZ3_1700 IPR023380 DsbB-like superfamily YPZ3_1700 IPR003752 Disulphide bond formation protein DsbB/BdbC YPZ3_1703 IPR010240 Cysteine desulfurase IscS YPZ3_1703 IPR016454 Cysteine desulfurase YPZ3_1703 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_1703 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_1703 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_1703 IPR000192 Aminotransferase class V domain YPZ3_1703 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPZ3_1705 IPR001207 Transposase, mutator type YPZ3_1706 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPZ3_1730 IPR001207 Transposase, mutator type YPZ3_1739 IPR008711 Recombinase NinB YPZ3_1739 IPR036619 NinB superfamily YPZ3_1741 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_1741 IPR002611 IstB-like ATP-binding protein YPZ3_1741 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1741 IPR003593 AAA+ ATPase domain YPZ3_1741 IPR001270 ClpA/B family YPZ3_1742 IPR036397 Ribonuclease H superfamily YPZ3_1742 IPR012337 Ribonuclease H-like superfamily YPZ3_1742 IPR006120 Resolvase, HTH domain YPZ3_1742 IPR001584 Integrase, catalytic core YPZ3_1742 IPR017894 HTH domain, IS21 transposase-type YPZ3_1743 IPR002104 Integrase, catalytic domain YPZ3_1743 IPR010998 Integrase/recombinase, N-terminal YPZ3_1743 IPR022000 Min27-like integrase, DNA-binding domain YPZ3_1743 IPR013762 Integrase-like, catalytic domain superfamily YPZ3_1743 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPZ3_1744 IPR005358 Putative zinc- or iron-chelating domain containing protein YPZ3_1744 IPR008228 Uncharacterised conserved protein UCP006173 YPZ3_1745 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPZ3_1745 IPR011234 Fumarylacetoacetase-like, C-terminal YPZ3_1746 IPR011757 Lytic transglycosylase MltB YPZ3_1746 IPR023346 Lysozyme-like domain superfamily YPZ3_1746 IPR031304 Transglycosylase SLT domain 2 YPZ3_1747 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal YPZ3_1747 IPR005526 Septum formation inhibitor MinC, C-terminal YPZ3_1747 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily YPZ3_1747 IPR007874 Septum formation inhibitor MinC, N-terminal YPZ3_1747 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily YPZ3_1747 IPR013033 Septum formation inhibitor MinC YPZ3_1748 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1748 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain YPZ3_1748 IPR010223 ATP binding protein MinD, bacterial-type YPZ3_1748 IPR025501 ATP binding protein MinD YPZ3_1749 IPR002121 HRDC domain YPZ3_1749 IPR002562 3'-5' exonuclease domain YPZ3_1749 IPR006292 Ribonuclease D YPZ3_1749 IPR012337 Ribonuclease H-like superfamily YPZ3_1749 IPR036397 Ribonuclease H superfamily YPZ3_1749 IPR010997 HRDC-like superfamily YPZ3_1750 IPR000873 AMP-dependent synthetase/ligase YPZ3_1750 IPR020845 AMP-binding, conserved site YPZ3_1750 IPR025110 AMP-binding enzyme, C-terminal domain YPZ3_1750 IPR042099 AMP-dependent synthetase-like superfamily YPZ3_1751 IPR004658 Outer membrane lipoprotein Slp YPZ3_1752 IPR000905 Gcp-like domain YPZ3_1752 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB YPZ3_1753 IPR006555 ATP-dependent helicase, C-terminal YPZ3_1753 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type YPZ3_1753 IPR006935 Helicase/UvrB, N-terminal YPZ3_1753 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_1753 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1754 IPR035709 RutC family, YoaB-like YPZ3_1754 IPR006175 YjgF/YER057c/UK114 family YPZ3_1754 IPR019897 RidA, conserved site YPZ3_1754 IPR035959 RutC-like superfamily YPZ3_1755 IPR000390 Small multidrug resistance protein family YPZ3_1755 IPR023737 Spermidine export protein MdtI YPZ3_1756 IPR000390 Small multidrug resistance protein family YPZ3_1756 IPR023740 Spermidine export protein MdtJ YPZ3_1757 IPR031338 KDPG/KHG aldolase, active site 2 YPZ3_1757 IPR031337 KDPG/KHG aldolase, active site 1 YPZ3_1757 IPR013785 Aldolase-type TIM barrel YPZ3_1757 IPR000887 KDPG/KHG aldolase YPZ3_1758 IPR001282 Glucose-6-phosphate dehydrogenase YPZ3_1758 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding YPZ3_1758 IPR036291 NAD(P)-binding domain superfamily YPZ3_1758 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal YPZ3_1758 IPR019796 Glucose-6-phosphate dehydrogenase, active site YPZ3_1759 IPR001347 Sugar isomerase (SIS) YPZ3_1759 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1759 IPR035472 RpiR-like, SIS domain YPZ3_1759 IPR000281 Helix-turn-helix protein RpiR YPZ3_1759 IPR009057 Homeobox-like domain superfamily YPZ3_1760 IPR011037 Pyruvate kinase-like, insert domain superfamily YPZ3_1760 IPR040442 Pyruvate kinase-like domain superfamily YPZ3_1760 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPZ3_1760 IPR001697 Pyruvate kinase YPZ3_1760 IPR015793 Pyruvate kinase, barrel YPZ3_1760 IPR036918 Pyruvate kinase, C-terminal domain superfamily YPZ3_1760 IPR015806 Pyruvate kinase, insert domain superfamily YPZ3_1760 IPR018209 Pyruvate kinase, active site YPZ3_1760 IPR015795 Pyruvate kinase, C-terminal YPZ3_1761 IPR004960 Bacterial lipid A biosynthesis acyltransferase YPZ3_1761 IPR011921 Lipid A biosynthesis myristoyltransferase YPZ3_1762 IPR016047 Peptidase M23 YPZ3_1762 IPR013731 Opacity-associated protein A, N-terminal YPZ3_1762 IPR018392 LysM domain YPZ3_1762 IPR011055 Duplicated hybrid motif YPZ3_1763 IPR006127 Periplasmic solute binding protein, ZnuA-like YPZ3_1763 IPR035520 High-affinity zinc uptake system protein ZnuA YPZ3_1764 IPR003593 AAA+ ATPase domain YPZ3_1764 IPR003439 ABC transporter-like YPZ3_1764 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1764 IPR017882 Zinc import ATP-binding protein ZnuC YPZ3_1765 IPR001626 ABC transporter, TroCD-like YPZ3_1765 IPR037294 ABC transporter, BtuC-like YPZ3_1766 IPR041445 RuvB, AAA lid domain YPZ3_1766 IPR004605 DNA helicase, Holliday junction RuvB-type YPZ3_1766 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1766 IPR008824 RuvB-like P-loop domain YPZ3_1766 IPR008823 RuvB C-terminal winged helix domain YPZ3_1766 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1766 IPR003593 AAA+ ATPase domain YPZ3_1766 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1767 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPZ3_1767 IPR010994 RuvA domain 2-like YPZ3_1767 IPR011114 Holliday junction DNA helicase RuvA, C-terminal YPZ3_1767 IPR036267 RuvA, C-terminal domain superfamily YPZ3_1767 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial YPZ3_1767 IPR012340 Nucleic acid-binding, OB-fold YPZ3_1767 IPR000085 Bacterial DNA recombination protein RuvA YPZ3_1768 IPR012337 Ribonuclease H-like superfamily YPZ3_1768 IPR036397 Ribonuclease H superfamily YPZ3_1768 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site YPZ3_1768 IPR002176 Crossover junction endodeoxyribonuclease RuvC YPZ3_1769 IPR026564 Transcriptional regulator TACO1-like, domain 3 YPZ3_1769 IPR002876 Transcriptional regulator TACO1-like YPZ3_1769 IPR029072 YebC-like YPZ3_1769 IPR017856 Integrase-like, N-terminal YPZ3_1770 IPR000086 NUDIX hydrolase domain YPZ3_1770 IPR003564 Dihydroneopterin triphosphate diphosphatase YPZ3_1770 IPR015797 NUDIX hydrolase-like domain superfamily YPZ3_1770 IPR020084 NUDIX hydrolase, conserved site YPZ3_1771 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPZ3_1771 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPZ3_1771 IPR029351 GAD domain YPZ3_1771 IPR012340 Nucleic acid-binding, OB-fold YPZ3_1771 IPR006195 Aminoacyl-tRNA synthetase, class II YPZ3_1771 IPR004524 Aspartate-tRNA ligase, type 1 YPZ3_1771 IPR004115 GAD-like domain superfamily YPZ3_1771 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb YPZ3_1772 IPR036520 UPF0759 superfamily YPZ3_1772 IPR002763 Protein of unknown function DUF72 YPZ3_1773 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein YPZ3_1773 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily YPZ3_1774 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_1774 IPR041698 Methyltransferase domain 25 YPZ3_1774 IPR005271 Carboxy-S-adenosyl-L-methionine synthase YPZ3_1775 IPR027555 tRNA (mo5U34)-methyltransferase-like YPZ3_1775 IPR010017 tRNA U34 carboxymethyltransferase YPZ3_1775 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_1776 IPR036822 Copper homeostasis (CutC) domain superfamily YPZ3_1776 IPR023648 Copper homeostasis CutC domain YPZ3_1776 IPR005627 Copper homeostasis protein CutC YPZ3_1777 IPR010393 Protein of unknown function DUF991 YPZ3_1777 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPZ3_1778 IPR035684 Arginyl-tRNA synthetase, catalytic core domain YPZ3_1778 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily YPZ3_1778 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_1778 IPR005148 Arginyl tRNA synthetase N-terminal domain YPZ3_1778 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPZ3_1778 IPR001278 Arginine-tRNA ligase YPZ3_1778 IPR008909 DALR anticodon binding YPZ3_1778 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPZ3_1779 IPR012334 Pectin lyase fold YPZ3_1779 IPR011050 Pectin lyase fold/virulence factor YPZ3_1779 IPR025157 Hemagglutinin repeat YPZ3_1779 IPR008638 Filamentous haemagglutinin, N-terminal YPZ3_1780 IPR035251 ShlB, POTRA domain YPZ3_1780 IPR005565 Haemolysin activator HlyB, C-terminal YPZ3_1780 IPR013686 Polypeptide-transport-associated, ShlB-type YPZ3_1780 IPR034746 POTRA domain YPZ3_1780 IPR027282 Two partner secretion pathway transporter YPZ3_1781 IPR004268 Peptidoglycan biosynthesis protein MurJ YPZ3_1782 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1782 IPR007432 Protein of unknown function DUF480 YPZ3_1782 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1783 IPR016181 Acyl-CoA N-acyltransferase YPZ3_1783 IPR000182 GNAT domain YPZ3_1784 IPR036259 MFS transporter superfamily YPZ3_1784 IPR020846 Major facilitator superfamily domain YPZ3_1784 IPR022855 Multidrug resistance protein MdtH YPZ3_1784 IPR011701 Major facilitator superfamily YPZ3_1785 IPR010835 Protein of unknown function DUF1439 YPZ3_1786 IPR026269 Tat proofreading chaperone DmsD-type YPZ3_1786 IPR020945 DMSO/Nitrate reductase chaperone YPZ3_1786 IPR036411 TorD-like superfamily YPZ3_1787 IPR016195 Polymerase/histidinol phosphatase-like YPZ3_1787 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPZ3_1787 IPR004013 PHP domain YPZ3_1787 IPR023710 Probable phosphatase YcdX YPZ3_1788 IPR022687 DTXR-type HTH domain YPZ3_1788 IPR000600 ROK family YPZ3_1788 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1788 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1789 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPZ3_1789 IPR030395 Glycerophosphodiester phosphodiesterase domain YPZ3_1790 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPZ3_1790 IPR013611 Transport-associated OB, type 2 YPZ3_1790 IPR003593 AAA+ ATPase domain YPZ3_1790 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1790 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_1790 IPR017871 ABC transporter, conserved site YPZ3_1790 IPR003439 ABC transporter-like YPZ3_1790 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YPZ3_1792 IPR003593 AAA+ ATPase domain YPZ3_1792 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_1792 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1792 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPZ3_1792 IPR013611 Transport-associated OB, type 2 YPZ3_1792 IPR003439 ABC transporter-like YPZ3_1792 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YPZ3_1792 IPR017871 ABC transporter, conserved site YPZ3_1793 IPR035906 MetI-like superfamily YPZ3_1793 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1794 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1794 IPR035906 MetI-like superfamily YPZ3_1796 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPZ3_1796 IPR030395 Glycerophosphodiester phosphodiesterase domain YPZ3_1797 IPR002645 STAS domain YPZ3_1797 IPR001902 SLC26A/SulP transporter YPZ3_1797 IPR011547 SLC26A/SulP transporter domain YPZ3_1797 IPR036513 STAS domain superfamily YPZ3_1797 IPR018045 Sulphate anion transporter, conserved site YPZ3_1798 IPR013785 Aldolase-type TIM barrel YPZ3_1798 IPR006269 3-deoxy-8-phosphooctulonate synthase YPZ3_1798 IPR006218 DAHP synthetase I/KDSA YPZ3_1799 IPR032698 Protein SirB1, N-terminal YPZ3_1800 IPR007360 Invasion gene expression up-regulator, SirB YPZ3_1801 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPZ3_1801 IPR004556 Methyltransferase HemK-like YPZ3_1801 IPR025714 Methyltransferase domain YPZ3_1801 IPR040758 Release factor glutamine methyltransferase, N-terminal domain YPZ3_1801 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific YPZ3_1801 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_1802 IPR000352 Peptide chain release factor class I YPZ3_1802 IPR005139 Peptide chain release factor YPZ3_1802 IPR004373 Peptide chain release factor 1 YPZ3_1803 IPR018214 Glutamyl-tRNA reductase, conserved site YPZ3_1803 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily YPZ3_1803 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily YPZ3_1803 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal YPZ3_1803 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain YPZ3_1803 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YPZ3_1803 IPR036291 NAD(P)-binding domain superfamily YPZ3_1803 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase YPZ3_1804 IPR004565 Outer membrane lipoprotein LolB YPZ3_1804 IPR029046 Lipoprotein localisation LolA/LolB/LppX YPZ3_1805 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPZ3_1805 IPR013750 GHMP kinase, C-terminal domain YPZ3_1805 IPR006204 GHMP kinase N-terminal domain YPZ3_1805 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YPZ3_1805 IPR036554 GHMP kinase, C-terminal domain superfamily YPZ3_1805 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_1806 IPR005946 Ribose-phosphate pyrophosphokinase YPZ3_1806 IPR029057 Phosphoribosyltransferase-like YPZ3_1806 IPR000836 Phosphoribosyltransferase domain YPZ3_1806 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site YPZ3_1806 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain YPZ3_1806 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type YPZ3_1807 IPR018171 Peptidyl-tRNA hydrolase, conserved site YPZ3_1807 IPR036416 Peptidyl-tRNA hydrolase superfamily YPZ3_1807 IPR001328 Peptidyl-tRNA hydrolase YPZ3_1808 IPR006073 GTP binding domain YPZ3_1808 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1808 IPR004095 TGS YPZ3_1808 IPR023192 TGS-like domain superfamily YPZ3_1808 IPR013029 YchF, C-terminal domain YPZ3_1808 IPR031167 OBG-type guanine nucleotide-binding (G) domain YPZ3_1808 IPR012675 Beta-grasp domain superfamily YPZ3_1808 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 YPZ3_1808 IPR012676 TGS-like YPZ3_1808 IPR041706 YchF, N-terminal YPZ3_1816 IPR029058 Alpha/Beta hydrolase fold YPZ3_1816 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain YPZ3_1817 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response YPZ3_1817 IPR001867 OmpR/PhoB-type DNA-binding domain YPZ3_1817 IPR011006 CheY-like superfamily YPZ3_1817 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1817 IPR039420 Transcriptional regulatory protein WalR-like YPZ3_1817 IPR001789 Signal transduction response regulator, receiver domain YPZ3_1818 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_1818 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_1818 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_1818 IPR003660 HAMP domain YPZ3_1818 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_1818 IPR005467 Histidine kinase domain YPZ3_1818 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_1818 IPR006290 Heavy metal sensor kinase YPZ3_1825 IPR036291 NAD(P)-binding domain superfamily YPZ3_1825 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPZ3_1825 IPR002347 Short-chain dehydrogenase/reductase SDR YPZ3_1826 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_1826 IPR013217 Methyltransferase type 12 YPZ3_1826 IPR016584 Methyltransferase VrtF-like YPZ3_1830 IPR001207 Transposase, mutator type YPZ3_1839 IPR001509 NAD-dependent epimerase/dehydratase YPZ3_1839 IPR036291 NAD(P)-binding domain superfamily YPZ3_1840 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPZ3_1840 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal YPZ3_1840 IPR016039 Thiolase-like YPZ3_1840 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 YPZ3_1841 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 YPZ3_1841 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPZ3_1841 IPR016039 Thiolase-like YPZ3_1841 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal YPZ3_1843 IPR014710 RmlC-like jelly roll fold YPZ3_1843 IPR011051 RmlC-like cupin domain superfamily YPZ3_1843 IPR010282 Uncharacterised protein family HutD/Ves YPZ3_1843 IPR023482 Uncharacterised protein family Ves YPZ3_1844 IPR023512 Deaminase MtaD/DadD YPZ3_1844 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPZ3_1844 IPR032466 Metal-dependent hydrolase YPZ3_1844 IPR006680 Amidohydrolase-related YPZ3_1845 IPR010248 Histidine utilization repressor YPZ3_1845 IPR000524 Transcription regulator HTH, GntR YPZ3_1845 IPR011663 UbiC transcription regulator-associated YPZ3_1845 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1845 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPZ3_1845 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1846 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPZ3_1846 IPR032466 Metal-dependent hydrolase YPZ3_1846 IPR006680 Amidohydrolase-related YPZ3_1846 IPR005920 Imidazolonepropionase YPZ3_1848 IPR003593 AAA+ ATPase domain YPZ3_1848 IPR001270 ClpA/B family YPZ3_1848 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_1848 IPR002611 IstB-like ATP-binding protein YPZ3_1848 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1849 IPR012337 Ribonuclease H-like superfamily YPZ3_1849 IPR001584 Integrase, catalytic core YPZ3_1849 IPR006120 Resolvase, HTH domain YPZ3_1849 IPR036397 Ribonuclease H superfamily YPZ3_1849 IPR017894 HTH domain, IS21 transposase-type YPZ3_1850 IPR015855 ABC transporter, maltose/maltodextrin import, MalK YPZ3_1850 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_1850 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1850 IPR013611 Transport-associated OB, type 2 YPZ3_1850 IPR017871 ABC transporter, conserved site YPZ3_1850 IPR003593 AAA+ ATPase domain YPZ3_1850 IPR003439 ABC transporter-like YPZ3_1851 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1851 IPR035906 MetI-like superfamily YPZ3_1852 IPR035906 MetI-like superfamily YPZ3_1852 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1854 IPR000683 Oxidoreductase, N-terminal YPZ3_1854 IPR004104 Oxidoreductase, C-terminal YPZ3_1854 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase YPZ3_1854 IPR036291 NAD(P)-binding domain superfamily YPZ3_1858 IPR001207 Transposase, mutator type YPZ3_1859 IPR001207 Transposase, mutator type YPZ3_1864 IPR036624 Hcp1-like superfamily YPZ3_1864 IPR008514 Type VI secretion system effector, Hcp YPZ3_1865 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YPZ3_1865 IPR000462 CDP-alcohol phosphatidyltransferase YPZ3_1865 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial YPZ3_1866 IPR001162 UvrC family homology region YPZ3_1866 IPR001943 UVR domain YPZ3_1866 IPR010994 RuvA domain 2-like YPZ3_1866 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPZ3_1866 IPR036876 UVR domain superfamily YPZ3_1866 IPR035901 GIY-YIG endonuclease superfamily YPZ3_1866 IPR038476 UvrC homology region 2 superfamily YPZ3_1866 IPR000305 GIY-YIG endonuclease YPZ3_1866 IPR004791 UvrABC system, subunit C YPZ3_1867 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_1867 IPR001789 Signal transduction response regulator, receiver domain YPZ3_1867 IPR000792 Transcription regulator LuxR, C-terminal YPZ3_1867 IPR011006 CheY-like superfamily YPZ3_1868 IPR009707 Membrane protein GlpM/YdgC YPZ3_1869 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPZ3_1869 IPR000758 Virulence-related outer membrane protein YPZ3_1869 IPR027385 Outer membrane protein beta-barrel domain YPZ3_1870 IPR004841 Amino acid permease/ SLC12A domain YPZ3_1870 IPR004840 Amino acid permease, conserved site YPZ3_1871 IPR006652 Kelch repeat type 1 YPZ3_1871 IPR019936 Mutatrotase, YjhT-like YPZ3_1871 IPR015915 Kelch-type beta propeller YPZ3_1872 IPR029039 Flavoprotein-like superfamily YPZ3_1872 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic YPZ3_1872 IPR005025 NADPH-dependent FMN reductase-like YPZ3_1872 IPR010089 Flavoprotein WrbA-like YPZ3_1872 IPR008254 Flavodoxin/nitric oxide synthase YPZ3_1873 IPR006311 Twin-arginine translocation pathway, signal sequence YPZ3_1873 IPR011008 Dimeric alpha-beta barrel YPZ3_1873 IPR006314 Dyp-type peroxidase YPZ3_1873 IPR006313 Deferrochelatase/peroxidase EfeB YPZ3_1874 IPR008972 Cupredoxin YPZ3_1874 IPR028096 EfeO-type cupredoxin-like domain YPZ3_1874 IPR018976 Imelysin-like domain YPZ3_1874 IPR038352 Imelysin-like domain superfamily YPZ3_1874 IPR034981 EfeO/Algp7, imelysin-like domain YPZ3_1875 IPR004923 Iron permease FTR1/Fip1/EfeU YPZ3_1876 IPR001734 Sodium/solute symporter YPZ3_1876 IPR018212 Sodium/solute symporter, conserved site YPZ3_1876 IPR011851 Sodium/proline symporter YPZ3_1876 IPR038377 Sodium/glucose symporter superfamily YPZ3_1877 IPR013321 Arc-type ribbon-helix-helix YPZ3_1877 IPR016163 Aldehyde dehydrogenase, C-terminal YPZ3_1877 IPR016160 Aldehyde dehydrogenase, cysteine active site YPZ3_1877 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPZ3_1877 IPR016162 Aldehyde dehydrogenase, N-terminal YPZ3_1877 IPR010985 Ribbon-helix-helix YPZ3_1877 IPR002872 Proline dehydrogenase domain YPZ3_1877 IPR024082 Proline dehydrogenase PutA, domain II YPZ3_1877 IPR024090 Proline dehydrogenase PutA, domain I YPZ3_1877 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain YPZ3_1877 IPR029041 FAD-linked oxidoreductase-like YPZ3_1877 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 YPZ3_1877 IPR025703 Bifunctional protein PutA YPZ3_1877 IPR015590 Aldehyde dehydrogenase domain YPZ3_1877 IPR024089 Proline dehydrogenase PutA, domain I/II YPZ3_1877 IPR016161 Aldehyde/histidinol dehydrogenase YPZ3_1882 IPR005966 D-cysteine desulfhydrase YPZ3_1882 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPZ3_1882 IPR001926 Pyridoxal-phosphate dependent enzyme YPZ3_1882 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase YPZ3_1882 IPR023702 D-cysteine desulphhydrase, bacterial YPZ3_1883 IPR004107 Integrase, SAM-like, N-terminal YPZ3_1883 IPR022523 Flagellar regulator, FliZ YPZ3_1884 IPR028617 RNA polymerase sigma factor FliA YPZ3_1884 IPR013324 RNA polymerase sigma factor, region 3/4-like YPZ3_1884 IPR013325 RNA polymerase sigma factor, region 2 YPZ3_1884 IPR007630 RNA polymerase sigma-70 region 4 YPZ3_1884 IPR007624 RNA polymerase sigma-70 region 3 YPZ3_1884 IPR012845 RNA polymerase sigma factor, FliA/WhiG YPZ3_1884 IPR007627 RNA polymerase sigma-70 region 2 YPZ3_1884 IPR000943 RNA polymerase sigma-70 YPZ3_1884 IPR014284 RNA polymerase sigma-70 like domain YPZ3_1885 IPR001492 Flagellin YPZ3_1885 IPR001029 Flagellin, D0/D1 domain YPZ3_1885 IPR014981 Flagellin D3 YPZ3_1886 IPR010810 Flagellin hook, IN motif YPZ3_1886 IPR040026 Flagellar hook-associated protein 2 YPZ3_1886 IPR003481 Flagellar hook-associated protein 2, N-terminal YPZ3_1886 IPR010809 Flagellar hook-associated protein 2, C-terminal YPZ3_1887 IPR036584 Flagellar protein FliS superfamily YPZ3_1887 IPR003713 Flagellar protein FliS YPZ3_1888 IPR018060 DNA binding HTH domain, AraC-type YPZ3_1888 IPR009057 Homeobox-like domain superfamily YPZ3_1888 IPR018062 HTH domain AraC-type, conserved site YPZ3_1888 IPR020449 Transcription regulator HTH, AraC- type YPZ3_1889 IPR029151 Periplasmic sensor-like domain superfamily YPZ3_1889 IPR029787 Nucleotide cyclase YPZ3_1889 IPR003660 HAMP domain YPZ3_1889 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase YPZ3_1889 IPR033479 Double Cache domain 1 YPZ3_1890 IPR006675 HDIG domain YPZ3_1890 IPR037522 HD-GYP domain YPZ3_1890 IPR006674 HD domain YPZ3_1890 IPR003607 HD/PDEase domain YPZ3_1891 IPR011257 DNA glycosylase YPZ3_1891 IPR003265 HhH-GPD domain YPZ3_1892 IPR001624 Flagellar hook-basal body complex protein FliE YPZ3_1893 IPR006182 Secretory protein YscJ/FliF YPZ3_1893 IPR013556 Flagellar M-ring C-terminal YPZ3_1893 IPR000067 Flagellar M-ring protein FliF YPZ3_1894 IPR023087 Flagellar motor switch protein FliG, C-terminal YPZ3_1894 IPR028263 Flagellar motor switch protein FliG, N-terminal domain YPZ3_1894 IPR032779 Flagellar motor switch protein FliG, middle domain YPZ3_1894 IPR011002 Flagellar motor switch protein FliG, alpha-helical YPZ3_1894 IPR000090 Flagellar motor switch protein FliG YPZ3_1895 IPR000563 Flagellar assembly protein FliH YPZ3_1895 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YPZ3_1896 IPR003593 AAA+ ATPase domain YPZ3_1896 IPR040627 T3SS EscN ATPase, C-terminal YPZ3_1896 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPZ3_1896 IPR032463 ATPase, type III secretion system, FliI YPZ3_1896 IPR005714 ATPase, type III secretion system, FliI/YscN YPZ3_1896 IPR020005 Flagellar export ATPase FliI, clade 1 YPZ3_1896 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1896 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPZ3_1897 IPR012823 Flagellar export FliJ YPZ3_1897 IPR018006 Flagellar FliJ, proteobacteria YPZ3_1898 IPR038610 FliK-like, C-terminal domain superfamily YPZ3_1898 IPR001635 Flagellar hook-length control protein FliK YPZ3_1898 IPR021136 Flagellar hook-length control protein-like, C-terminal YPZ3_1899 IPR005503 Flagellar basal body-associated protein FliL YPZ3_1900 IPR036429 SpoA-like superfamily YPZ3_1900 IPR001689 Flagellar motor switch protein FliM YPZ3_1900 IPR001543 Surface presentation of antigen (SpoA) YPZ3_1900 IPR028976 CheC-like superfamily YPZ3_1901 IPR001543 Surface presentation of antigen (SpoA) YPZ3_1901 IPR031576 Flagellar motor switch protein FliN, N-terminal YPZ3_1901 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPZ3_1901 IPR036429 SpoA-like superfamily YPZ3_1901 IPR012826 Flagellar motor switch FliN YPZ3_1902 IPR022781 Flagellar biosynthesis protein, FliO YPZ3_1903 IPR005837 Flagellar transport protein FliP YPZ3_1903 IPR005838 Type III secretion system inner membrane P protein YPZ3_1904 IPR002010 Type III secretion system inner membrane R protein YPZ3_1904 IPR006303 Flagellar biosynthesis protein FliR YPZ3_1906 IPR029056 Ribokinase-like YPZ3_1906 IPR030877 Sulfofructose kinase YPZ3_1906 IPR002139 Ribokinase/fructokinase YPZ3_1906 IPR011611 Carbohydrate kinase PfkB YPZ3_1906 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPZ3_1907 IPR001851 ABC transporter, permease YPZ3_1908 IPR003439 ABC transporter-like YPZ3_1908 IPR017871 ABC transporter, conserved site YPZ3_1908 IPR003593 AAA+ ATPase domain YPZ3_1908 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1908 IPR015861 ABC transporter, ribose import, RbsA YPZ3_1909 IPR025997 Periplasmic binding protein YPZ3_1909 IPR030159 Autoinducer 2 ABC transporter, substrate-binding protein LsrB YPZ3_1909 IPR028082 Periplasmic binding protein-like I YPZ3_1910 IPR001851 ABC transporter, permease YPZ3_1911 IPR001303 Class II aldolase/adducin N-terminal YPZ3_1911 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPZ3_1911 IPR013454 Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase YPZ3_1911 IPR036291 NAD(P)-binding domain superfamily YPZ3_1911 IPR002347 Short-chain dehydrogenase/reductase SDR YPZ3_1912 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1912 IPR007324 Sugar-binding domain, putative YPZ3_1912 IPR013324 RNA polymerase sigma factor, region 3/4-like YPZ3_1912 IPR037171 NagB/RpiA transferase-like YPZ3_1913 IPR013384 Flagellar hook-associated protein 3 YPZ3_1913 IPR001029 Flagellin, D0/D1 domain YPZ3_1914 IPR002371 Flagellar hook-associated protein 1 YPZ3_1914 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPZ3_1914 IPR001444 Flagellar basal body rod protein, N-terminal YPZ3_1915 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain YPZ3_1915 IPR019301 Flagellar protein FlgJ, N-terminal YPZ3_1915 IPR013377 Peptidoglycan hydrolase FlgJ YPZ3_1916 IPR001782 Flagellar P-ring protein YPZ3_1917 IPR000527 Flagellar L-ring protein YPZ3_1918 IPR019776 Flagellar basal body rod protein, conserved site YPZ3_1918 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPZ3_1918 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPZ3_1918 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPZ3_1918 IPR001444 Flagellar basal body rod protein, N-terminal YPZ3_1918 IPR012834 Flagellar basal-body rod FlgG YPZ3_1919 IPR019776 Flagellar basal body rod protein, conserved site YPZ3_1919 IPR001444 Flagellar basal body rod protein, N-terminal YPZ3_1919 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPZ3_1919 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPZ3_1919 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPZ3_1920 IPR019776 Flagellar basal body rod protein, conserved site YPZ3_1920 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPZ3_1920 IPR001444 Flagellar basal body rod protein, N-terminal YPZ3_1920 IPR037058 Flagellar hook protein FlgE superfamily YPZ3_1920 IPR011491 Flagellar hook protein FlgE YPZ3_1920 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPZ3_1920 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPZ3_1921 IPR025963 FlgD Tudor-like domain YPZ3_1921 IPR025965 FlgD Ig-like domain YPZ3_1921 IPR005648 Flagellar hook capping protein YPZ3_1922 IPR001444 Flagellar basal body rod protein, N-terminal YPZ3_1922 IPR019776 Flagellar basal body rod protein, conserved site YPZ3_1922 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPZ3_1922 IPR006299 Flagellar basal-body rod protein FlgC YPZ3_1923 IPR006300 Flagellar basal-body rod protein FlgB YPZ3_1923 IPR019776 Flagellar basal body rod protein, conserved site YPZ3_1923 IPR001444 Flagellar basal body rod protein, N-terminal YPZ3_1924 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YPZ3_1924 IPR039246 Flagellar protein FlgA YPZ3_1924 IPR041231 FlgA, N-terminal YPZ3_1924 IPR013974 SAF domain YPZ3_1925 IPR035890 Anti-sigma-28 factor FlgM superfamily YPZ3_1925 IPR007412 Anti-sigma-28 factor, FlgM YPZ3_1925 IPR031316 Anti-sigma-28 factor FlgM, C-terminal YPZ3_1926 IPR036679 FlgN-like superfamily YPZ3_1926 IPR007809 FlgN-like protein YPZ3_1927 IPR008964 Invasin/intimin cell-adhesion fragments YPZ3_1927 IPR013117 Intimin, C-terminal YPZ3_1927 IPR016186 C-type lectin-like/link domain superfamily YPZ3_1927 IPR015217 Invasin, domain 3 YPZ3_1927 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPZ3_1927 IPR013783 Immunoglobulin-like fold YPZ3_1927 IPR038177 Inverse autotransporter, beta-domain superfamily YPZ3_1927 IPR024519 Inverse autotransporter, beta-domain YPZ3_1927 IPR016187 C-type lectin fold YPZ3_1927 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPZ3_1929 IPR009420 Flagellar protein FlhE YPZ3_1930 IPR042196 FHIPEP, domain 4 YPZ3_1930 IPR001712 Type III secretion system FHIPEP YPZ3_1930 IPR006301 Flagellar biosynthesis protein FlhA YPZ3_1930 IPR025505 FHIPEP conserved site YPZ3_1930 IPR042194 FHIPEP, domain 1 YPZ3_1930 IPR042193 FHIPEP, domain 3 YPZ3_1931 IPR006136 Flagellar biosynthetic protein FlhB YPZ3_1931 IPR029025 Type III secretion system substrate exporter, C-terminal YPZ3_1931 IPR006135 Type III secretion system substrate exporter YPZ3_1934 IPR019648 Protein of unknown function DUF2511 YPZ3_1936 IPR032694 Copper transport protein C/D YPZ3_1936 IPR014756 Immunoglobulin E-set YPZ3_1936 IPR007348 CopC domain YPZ3_1937 IPR008331 Ferritin/DPS protein domain YPZ3_1937 IPR009078 Ferritin-like superfamily YPZ3_1937 IPR009040 Ferritin-like diiron domain YPZ3_1937 IPR041719 Ferritin, prokaryotic-type YPZ3_1937 IPR012347 Ferritin-like YPZ3_1937 IPR001519 Ferritin YPZ3_1938 IPR000073 Alpha/beta hydrolase fold-1 YPZ3_1938 IPR002410 Peptidase S33 YPZ3_1938 IPR005944 Proline iminopeptidase YPZ3_1938 IPR029058 Alpha/Beta hydrolase fold YPZ3_1939 IPR029058 Alpha/Beta hydrolase fold YPZ3_1939 IPR002471 Peptidase S9, serine active site YPZ3_1939 IPR002470 Peptidase S9A, prolyl oligopeptidase YPZ3_1939 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain YPZ3_1939 IPR023302 Peptidase S9A, N-terminal domain YPZ3_1940 IPR038703 YebF/Cmi superfamily YPZ3_1940 IPR020236 Uncharacterised protein family YebF YPZ3_1940 IPR025603 YebF/Colicin-M immunity protein YPZ3_1942 IPR038627 YebG-like superfamily YPZ3_1942 IPR009813 Uncharacterised protein family YebG YPZ3_1943 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain YPZ3_1943 IPR011545 DEAD/DEAH box helicase domain YPZ3_1943 IPR028619 ATP-dependent RNA helicase DbpA YPZ3_1943 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_1943 IPR001650 Helicase, C-terminal YPZ3_1943 IPR014014 RNA helicase, DEAD-box type, Q motif YPZ3_1943 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPZ3_1943 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1943 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YPZ3_1944 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YPZ3_1944 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase YPZ3_1944 IPR011761 ATP-grasp fold YPZ3_1944 IPR016185 Pre-ATP-grasp domain superfamily YPZ3_1944 IPR013815 ATP-grasp fold, subdomain 1 YPZ3_1944 IPR011054 Rudiment single hybrid motif YPZ3_1945 IPR005802 Aminodeoxychorismate synthase, component I YPZ3_1945 IPR005801 ADC synthase YPZ3_1945 IPR019999 Anthranilate synthase component I-like YPZ3_1945 IPR006805 Anthranilate synthase component I, N-terminal YPZ3_1945 IPR015890 Chorismate-utilising enzyme, C-terminal YPZ3_1946 IPR015797 NUDIX hydrolase-like domain superfamily YPZ3_1946 IPR023735 Uncharacterised nudix hydrolase NudL YPZ3_1946 IPR000059 NUDIX hydrolase, NudL, conserved site YPZ3_1946 IPR000086 NUDIX hydrolase domain YPZ3_1947 IPR005131 Serine dehydratase beta chain YPZ3_1947 IPR005130 Serine dehydratase-like, alpha subunit YPZ3_1947 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form YPZ3_1947 IPR029009 Allosteric substrate binding domain superfamily YPZ3_1948 IPR011982 4-hydroxyphenylacetate 3-monooxygenase, reductase component YPZ3_1948 IPR002563 Flavin reductase like domain YPZ3_1948 IPR012349 FMN-binding split barrel YPZ3_1949 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein YPZ3_1949 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily YPZ3_1949 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal YPZ3_1949 IPR004925 HpaB/PvcC/4-BUDH YPZ3_1949 IPR012688 4-HPA 3-monooxygenase large component, gammaproteobacteria YPZ3_1949 IPR024674 HpaB/PvcC/4-BUDH N-terminal YPZ3_1949 IPR024719 HpaB/PvcC/4-BUDH C-terminal YPZ3_1950 IPR011701 Major facilitator superfamily YPZ3_1950 IPR020846 Major facilitator superfamily domain YPZ3_1950 IPR036259 MFS transporter superfamily YPZ3_1951 IPR023701 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, Enterobacteriales YPZ3_1951 IPR040442 Pyruvate kinase-like domain superfamily YPZ3_1951 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPZ3_1951 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YPZ3_1951 IPR005000 HpcH/HpaI aldolase/citrate lyase domain YPZ3_1952 IPR011234 Fumarylacetoacetase-like, C-terminal YPZ3_1952 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPZ3_1952 IPR012690 2-oxo-hepta-4-ene-1,7-dioic acid hydratase YPZ3_1953 IPR014347 Tautomerase/MIF superfamily YPZ3_1953 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase YPZ3_1954 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YPZ3_1954 IPR011984 3,4-dihydroxyphenylacetate 2,3-dioxygenase YPZ3_1955 IPR016162 Aldehyde dehydrogenase, N-terminal YPZ3_1955 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPZ3_1955 IPR016160 Aldehyde dehydrogenase, cysteine active site YPZ3_1955 IPR015590 Aldehyde dehydrogenase domain YPZ3_1955 IPR016163 Aldehyde dehydrogenase, C-terminal YPZ3_1955 IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YPZ3_1955 IPR016161 Aldehyde/histidinol dehydrogenase YPZ3_1956 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPZ3_1956 IPR011234 Fumarylacetoacetase-like, C-terminal YPZ3_1956 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit YPZ3_1956 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit YPZ3_1957 IPR011234 Fumarylacetoacetase-like, C-terminal YPZ3_1957 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit YPZ3_1957 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit YPZ3_1957 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPZ3_1958 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1958 IPR000835 MarR-type HTH domain YPZ3_1958 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1958 IPR023187 Transcriptional regulator MarR-type, conserved site YPZ3_1958 IPR012712 HTH-type transcriptional regulator HpaR/FarR YPZ3_1959 IPR016169 FAD-binding, type PCMH, subdomain 2 YPZ3_1959 IPR036318 FAD-binding, type PCMH-like superfamily YPZ3_1959 IPR000644 CBS domain YPZ3_1959 IPR005496 Integral membrane protein TerC YPZ3_1959 IPR005170 Transporter-associated domain YPZ3_1960 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily YPZ3_1960 IPR004701 Phosphotransferase system, mannose-type IIA component YPZ3_1960 IPR013789 Phosphotransferase system, mannose family IIA component YPZ3_1960 IPR033887 PTS system mannose/sorbose specific IIA subunit YPZ3_1960 IPR004720 Phosphotransferase system, sorbose subfamily IIB component YPZ3_1960 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily YPZ3_1960 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup YPZ3_1961 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit YPZ3_1962 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component YPZ3_1963 IPR009328 Protein of unknown function DUF986 YPZ3_1964 IPR003810 Putative manganese efflux pump YPZ3_1964 IPR022929 Putative manganese efflux pump MntP YPZ3_1965 IPR037066 TonB-dependent receptor, plug domain superfamily YPZ3_1965 IPR010105 TonB-dependent siderophore receptor YPZ3_1965 IPR039423 TonB-dependent receptor-like YPZ3_1965 IPR000531 TonB-dependent receptor-like, beta-barrel YPZ3_1965 IPR010916 TonB box, conserved site YPZ3_1965 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPZ3_1965 IPR012910 TonB-dependent receptor, plug domain YPZ3_1965 IPR030149 TonB-dependent siderophore receptor FcuA/FatA YPZ3_1965 IPR010917 TonB-dependent receptor, conserved site YPZ3_1966 IPR013656 PAS fold-4 YPZ3_1966 IPR029787 Nucleotide cyclase YPZ3_1966 IPR007895 MASE1 YPZ3_1966 IPR000160 GGDEF domain YPZ3_1966 IPR035919 EAL domain superfamily YPZ3_1966 IPR035965 PAS domain superfamily YPZ3_1966 IPR001610 PAC motif YPZ3_1966 IPR000014 PAS domain YPZ3_1966 IPR013655 PAS fold-3 YPZ3_1966 IPR001633 EAL domain YPZ3_1966 IPR000700 PAS-associated, C-terminal YPZ3_1967 IPR025714 Methyltransferase domain YPZ3_1967 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted YPZ3_1967 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_1969 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP YPZ3_1969 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPZ3_1970 IPR004840 Amino acid permease, conserved site YPZ3_1970 IPR004841 Amino acid permease/ SLC12A domain YPZ3_1971 IPR018060 DNA binding HTH domain, AraC-type YPZ3_1971 IPR009057 Homeobox-like domain superfamily YPZ3_1971 IPR018062 HTH domain AraC-type, conserved site YPZ3_1971 IPR020449 Transcription regulator HTH, AraC- type YPZ3_1972 IPR003439 ABC transporter-like YPZ3_1972 IPR017871 ABC transporter, conserved site YPZ3_1972 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1972 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPZ3_1972 IPR039421 Type I protein exporter YPZ3_1972 IPR003593 AAA+ ATPase domain YPZ3_1972 IPR011527 ABC transporter type 1, transmembrane domain YPZ3_1974 IPR042252 MtfA, N-terminal YPZ3_1974 IPR024079 Metallopeptidase, catalytic domain superfamily YPZ3_1974 IPR010384 MtfA family YPZ3_1975 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1975 IPR003593 AAA+ ATPase domain YPZ3_1975 IPR001270 ClpA/B family YPZ3_1975 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_1975 IPR002611 IstB-like ATP-binding protein YPZ3_1976 IPR001584 Integrase, catalytic core YPZ3_1976 IPR012337 Ribonuclease H-like superfamily YPZ3_1976 IPR036397 Ribonuclease H superfamily YPZ3_1976 IPR006120 Resolvase, HTH domain YPZ3_1976 IPR017894 HTH domain, IS21 transposase-type YPZ3_1977 IPR000843 LacI-type HTH domain YPZ3_1977 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_1977 IPR028082 Periplasmic binding protein-like I YPZ3_1977 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPZ3_1978 IPR001207 Transposase, mutator type YPZ3_1979 IPR011051 RmlC-like cupin domain superfamily YPZ3_1979 IPR013096 Cupin 2, conserved barrel YPZ3_1979 IPR025499 Pectin degradation protein KdgF YPZ3_1979 IPR014710 RmlC-like jelly roll fold YPZ3_1980 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal YPZ3_1980 IPR021120 KduI/IolB isomerase YPZ3_1980 IPR011051 RmlC-like cupin domain superfamily YPZ3_1980 IPR007045 5-keto 4-deoxyuronate isomerase YPZ3_1980 IPR014710 RmlC-like jelly roll fold YPZ3_1981 IPR002347 Short-chain dehydrogenase/reductase SDR YPZ3_1981 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPZ3_1981 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase YPZ3_1981 IPR036291 NAD(P)-binding domain superfamily YPZ3_1982 IPR010702 Periplasmic pectate lyase YPZ3_1983 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1983 IPR035906 MetI-like superfamily YPZ3_1984 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_1984 IPR035906 MetI-like superfamily YPZ3_1985 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_1985 IPR003593 AAA+ ATPase domain YPZ3_1985 IPR003439 ABC transporter-like YPZ3_1985 IPR017871 ABC transporter, conserved site YPZ3_1985 IPR040582 MalK, OB fold domain YPZ3_1985 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_1985 IPR005116 Transport-associated OB, type 1 YPZ3_1986 IPR006059 Bacterial extracellular solute-binding protein YPZ3_1987 IPR009331 Oligogalacturonate-specific porin YPZ3_1988 IPR007404 LexA-binding, inner membrane-associated putative hydrolase YPZ3_1988 IPR016956 Inner membrane protein YdjM YPZ3_1990 IPR036365 PGBD-like superfamily YPZ3_1990 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPZ3_1990 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily YPZ3_1990 IPR036366 PGBD superfamily YPZ3_1991 IPR029016 GAF-like domain superfamily YPZ3_1991 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_1991 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_1991 IPR005471 Transcription regulator IclR, N-terminal YPZ3_1991 IPR014757 Transcription regulator IclR, C-terminal YPZ3_1991 IPR011991 ArsR-like helix-turn-helix domain YPZ3_1992 IPR015943 WD40/YVTN repeat-like-containing domain superfamily YPZ3_1992 IPR027946 Oligogalacturonate lyase domain YPZ3_1993 IPR011701 Major facilitator superfamily YPZ3_1993 IPR020846 Major facilitator superfamily domain YPZ3_1993 IPR036259 MFS transporter superfamily YPZ3_1994 IPR018046 Pili assembly chaperone, conserved site YPZ3_1994 IPR016147 Pili assembly chaperone, N-terminal YPZ3_1994 IPR001829 Pili assembly chaperone, bacterial YPZ3_1994 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPZ3_1994 IPR008962 PapD-like superfamily YPZ3_1994 IPR013783 Immunoglobulin-like fold YPZ3_1994 IPR016148 Pili assembly chaperone, C-terminal YPZ3_1996 IPR000015 Outer membrane usher protein YPZ3_1996 IPR018030 Fimbrial membrane usher, conserved site YPZ3_1996 IPR042186 Outer membrane usher protein FimD, plug domain YPZ3_1996 IPR025885 PapC, N-terminal domain YPZ3_1996 IPR025949 PapC-like, C-terminal domain YPZ3_1996 IPR037224 PapC, N-terminal domain superfamily YPZ3_1997 IPR013783 Immunoglobulin-like fold YPZ3_1997 IPR008962 PapD-like superfamily YPZ3_1997 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPZ3_1997 IPR001829 Pili assembly chaperone, bacterial YPZ3_1997 IPR016148 Pili assembly chaperone, C-terminal YPZ3_1997 IPR016147 Pili assembly chaperone, N-terminal YPZ3_1997 IPR018046 Pili assembly chaperone, conserved site YPZ3_1998 IPR000259 Fimbrial-type adhesion domain YPZ3_1998 IPR036937 Fimbrial-type adhesion domain superfamily YPZ3_1998 IPR008966 Adhesion domain superfamily YPZ3_1999 IPR001915 Peptidase M48 YPZ3_1999 IPR022919 Peptidase M48, protease HtpX, putative YPZ3_2000 IPR020992 Tail specific protease, C-terminal YPZ3_2000 IPR029045 ClpP/crotonase-like domain superfamily YPZ3_2000 IPR001478 PDZ domain YPZ3_2000 IPR036034 PDZ superfamily YPZ3_2000 IPR004447 C-terminal-processing peptidase S41A YPZ3_2000 IPR040573 Tail specific protease, N-terminal domain YPZ3_2000 IPR005151 Tail specific protease YPZ3_2001 IPR035236 RNA chaperone ProQ, C-terminal YPZ3_2001 IPR036442 ProQ/FinO domain superfamily YPZ3_2001 IPR016103 ProQ/FinO domain YPZ3_2001 IPR023529 RNA chaperone ProQ YPZ3_2002 IPR029016 GAF-like domain superfamily YPZ3_2002 IPR000614 Free Met sulfoxide reductase conserved site YPZ3_2002 IPR003018 GAF domain YPZ3_2003 IPR007498 Intermembrane transport protein PqiA-like YPZ3_2003 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type YPZ3_2003 IPR011031 Multihaem cytochrome YPZ3_2004 IPR003399 Mce/MlaD YPZ3_2007 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPZ3_2007 IPR001829 Pili assembly chaperone, bacterial YPZ3_2007 IPR016148 Pili assembly chaperone, C-terminal YPZ3_2007 IPR018046 Pili assembly chaperone, conserved site YPZ3_2007 IPR013783 Immunoglobulin-like fold YPZ3_2007 IPR008962 PapD-like superfamily YPZ3_2007 IPR016147 Pili assembly chaperone, N-terminal YPZ3_2011 IPR036397 Ribonuclease H superfamily YPZ3_2011 IPR012337 Ribonuclease H-like superfamily YPZ3_2011 IPR006120 Resolvase, HTH domain YPZ3_2011 IPR001584 Integrase, catalytic core YPZ3_2011 IPR017894 HTH domain, IS21 transposase-type YPZ3_2012 IPR002611 IstB-like ATP-binding protein YPZ3_2012 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_2012 IPR001270 ClpA/B family YPZ3_2012 IPR003593 AAA+ ATPase domain YPZ3_2012 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2014 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site YPZ3_2014 IPR029066 PLP-binding barrel YPZ3_2014 IPR001608 Alanine racemase, N-terminal YPZ3_2014 IPR011079 Alanine racemase, C-terminal YPZ3_2014 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPZ3_2014 IPR000821 Alanine racemase YPZ3_2016 IPR008640 Head domain of trimeric autotransporter adhesin YPZ3_2016 IPR011049 Serralysin-like metalloprotease, C-terminal YPZ3_2016 IPR005594 YadA-like, C-terminal YPZ3_2016 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPZ3_2016 IPR024973 ESPR domain YPZ3_2017 IPR024973 ESPR domain YPZ3_2017 IPR005594 YadA-like, C-terminal YPZ3_2017 IPR011049 Serralysin-like metalloprotease, C-terminal YPZ3_2017 IPR008640 Head domain of trimeric autotransporter adhesin YPZ3_2017 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPZ3_2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPZ3_2018 IPR036365 PGBD-like superfamily YPZ3_2018 IPR036366 PGBD superfamily YPZ3_2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily YPZ3_2019 IPR007439 Chemotaxis phosphatase, CheZ YPZ3_2020 IPR011006 CheY-like superfamily YPZ3_2020 IPR001789 Signal transduction response regulator, receiver domain YPZ3_2021 IPR035909 Methylesterase CheB, C-terminal YPZ3_2021 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase YPZ3_2021 IPR001789 Signal transduction response regulator, receiver domain YPZ3_2021 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type YPZ3_2021 IPR011006 CheY-like superfamily YPZ3_2022 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_2022 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal YPZ3_2022 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily YPZ3_2022 IPR000780 MCP methyltransferase, CheR-type YPZ3_2022 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal YPZ3_2022 IPR026024 Chemotaxis protein methyltransferase CheR YPZ3_2023 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPZ3_2023 IPR004090 Chemotaxis methyl-accepting receptor YPZ3_2023 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_2023 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPZ3_2023 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPZ3_2023 IPR003660 HAMP domain YPZ3_2024 IPR004090 Chemotaxis methyl-accepting receptor YPZ3_2024 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPZ3_2024 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPZ3_2024 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_2024 IPR003660 HAMP domain YPZ3_2024 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPZ3_2027 IPR011050 Pectin lyase fold/virulence factor YPZ3_2027 IPR036709 Autotransporter beta-domain superfamily YPZ3_2027 IPR013425 Autotransporter-associated beta strand repeat YPZ3_2027 IPR005546 Autotransporter beta-domain YPZ3_2027 IPR006315 Outer membrane autotransporter barrel YPZ3_2027 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPZ3_2028 IPR039446 Transcriptional regulator DauR-like YPZ3_2028 IPR013559 YheO-like YPZ3_2028 IPR039445 Transcriptional regulator DauR-like, HTH domain YPZ3_2030 IPR019897 RidA, conserved site YPZ3_2030 IPR035959 RutC-like superfamily YPZ3_2030 IPR006175 YjgF/YER057c/UK114 family YPZ3_2030 IPR006056 RidA family YPZ3_2031 IPR011701 Major facilitator superfamily YPZ3_2031 IPR036259 MFS transporter superfamily YPZ3_2031 IPR020846 Major facilitator superfamily domain YPZ3_2032 IPR002545 CheW-like domain YPZ3_2032 IPR036061 CheW-like domain superfamily YPZ3_2032 IPR039315 Chemotaxis protein CheW YPZ3_2033 IPR036641 HPT domain superfamily YPZ3_2033 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_2033 IPR035891 CheY-binding domain of CheA YPZ3_2033 IPR002545 CheW-like domain YPZ3_2033 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_2033 IPR036061 CheW-like domain superfamily YPZ3_2033 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily YPZ3_2033 IPR005467 Histidine kinase domain YPZ3_2033 IPR015162 CheY binding YPZ3_2033 IPR004105 Histidine kinase CheA-like, homodimeric domain YPZ3_2033 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_2033 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_2033 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPZ3_2034 IPR006665 OmpA-like domain YPZ3_2034 IPR036737 OmpA-like domain superfamily YPZ3_2034 IPR025713 Motility protein B, N-terminal domain YPZ3_2035 IPR002898 MotA/TolQ/ExbB proton channel YPZ3_2035 IPR000540 Flagellar motor protein MotA, conserved site YPZ3_2035 IPR022522 Flagellar motor stator, MotA YPZ3_2036 IPR007944 Flagellar transcriptional activator FlhC YPZ3_2037 IPR006415 P-type ATPase, subfamily IIIB YPZ3_2037 IPR036412 HAD-like superfamily YPZ3_2037 IPR008250 P-type ATPase, A domain superfamily YPZ3_2037 IPR023299 P-type ATPase, cytoplasmic domain N YPZ3_2037 IPR001757 P-type ATPase YPZ3_2037 IPR004014 Cation-transporting P-type ATPase, N-terminal YPZ3_2037 IPR023214 HAD superfamily YPZ3_2037 IPR006068 Cation-transporting P-type ATPase, C-terminal YPZ3_2037 IPR023298 P-type ATPase, transmembrane domain superfamily YPZ3_2037 IPR018303 P-type ATPase, phosphorylation site YPZ3_2038 IPR003416 MgtC/SapB/SrpB/YhiD family YPZ3_2039 IPR003660 HAMP domain YPZ3_2039 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPZ3_2039 IPR004090 Chemotaxis methyl-accepting receptor YPZ3_2039 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPZ3_2039 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPZ3_2039 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_2040 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPZ3_2040 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPZ3_2040 IPR004090 Chemotaxis methyl-accepting receptor YPZ3_2040 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPZ3_2040 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_2040 IPR003660 HAMP domain YPZ3_2041 IPR023232 Glycoside hydrolase, family 2, active site YPZ3_2041 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily YPZ3_2041 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase YPZ3_2041 IPR011013 Galactose mutarotase-like domain superfamily YPZ3_2041 IPR008979 Galactose-binding-like domain superfamily YPZ3_2041 IPR014718 Glycoside hydrolase-type carbohydrate-binding YPZ3_2041 IPR006101 Glycoside hydrolase, family 2 YPZ3_2041 IPR006103 Glycoside hydrolase family 2, catalytic domain YPZ3_2041 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich YPZ3_2041 IPR032312 Beta-galactosidase, domain 4 YPZ3_2041 IPR004199 Beta galactosidase small chain/ domain 5 YPZ3_2041 IPR023230 Glycoside hydrolase, family 2, conserved site YPZ3_2041 IPR017853 Glycoside hydrolase superfamily YPZ3_2041 IPR013783 Immunoglobulin-like fold YPZ3_2041 IPR006104 Glycosyl hydrolases family 2, sugar binding domain YPZ3_2042 IPR011032 GroES-like superfamily YPZ3_2042 IPR018201 Beta-ketoacyl synthase, active site YPZ3_2042 IPR014031 Beta-ketoacyl synthase, C-terminal YPZ3_2042 IPR020843 Polyketide synthase, enoylreductase domain YPZ3_2042 IPR013154 Alcohol dehydrogenase, N-terminal YPZ3_2042 IPR042104 Polyketide synthase, dehydratase domain superfamily YPZ3_2042 IPR020807 Polyketide synthase, dehydratase domain YPZ3_2042 IPR014030 Beta-ketoacyl synthase, N-terminal YPZ3_2042 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPZ3_2042 IPR032821 Ketoacyl-synthetase, C-terminal extension YPZ3_2042 IPR013968 Polyketide synthase, ketoreductase domain YPZ3_2042 IPR013149 Alcohol dehydrogenase, C-terminal YPZ3_2042 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPZ3_2042 IPR036291 NAD(P)-binding domain superfamily YPZ3_2042 IPR016039 Thiolase-like YPZ3_2042 IPR009081 Phosphopantetheine binding ACP domain YPZ3_2042 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPZ3_2042 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPZ3_2042 IPR014043 Acyl transferase YPZ3_2042 IPR036736 ACP-like superfamily YPZ3_2043 IPR019713 Inner membrane protein YlaC YPZ3_2044 IPR000485 AsnC-type HTH domain YPZ3_2044 IPR011008 Dimeric alpha-beta barrel YPZ3_2044 IPR019888 Transcription regulator AsnC-type YPZ3_2044 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPZ3_2044 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPZ3_2044 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_2044 IPR011991 ArsR-like helix-turn-helix domain YPZ3_2044 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2046 IPR029033 Histidine phosphatase superfamily YPZ3_2046 IPR000560 Histidine phosphatase superfamily, clade-2 YPZ3_2046 IPR033379 Histidine acid phosphatase active site YPZ3_2047 IPR002577 Helix-turn-helix, HxlR type YPZ3_2047 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_2047 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2048 IPR036291 NAD(P)-binding domain superfamily YPZ3_2048 IPR008030 NmrA-like domain YPZ3_2049 IPR001610 PAC motif YPZ3_2049 IPR000014 PAS domain YPZ3_2049 IPR035965 PAS domain superfamily YPZ3_2049 IPR004090 Chemotaxis methyl-accepting receptor YPZ3_2049 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_2049 IPR003660 HAMP domain YPZ3_2049 IPR013655 PAS fold-3 YPZ3_2050 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_2050 IPR000843 LacI-type HTH domain YPZ3_2050 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPZ3_2050 IPR028082 Periplasmic binding protein-like I YPZ3_2051 IPR024084 Isopropylmalate dehydrogenase-like domain YPZ3_2051 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPZ3_2051 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic YPZ3_2052 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPZ3_2052 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPZ3_2052 IPR006145 Pseudouridine synthase, RsuA/RluA YPZ3_2052 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain YPZ3_2052 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPZ3_2053 IPR020476 NUDIX hydrolase YPZ3_2053 IPR015797 NUDIX hydrolase-like domain superfamily YPZ3_2053 IPR020084 NUDIX hydrolase, conserved site YPZ3_2053 IPR000086 NUDIX hydrolase domain YPZ3_2053 IPR033713 Phosphatase NudJ YPZ3_2054 IPR023382 Adenine nucleotide alpha hydrolase-like domains YPZ3_2054 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2054 IPR004506 tRNA-specific 2-thiouridylase YPZ3_2055 IPR007451 High frequency lysogenization protein HflD YPZ3_2055 IPR035932 HflD-like superfamily YPZ3_2056 IPR024083 Fumarase/histidase, N-terminal YPZ3_2056 IPR020557 Fumarate lyase, conserved site YPZ3_2056 IPR000362 Fumarate lyase family YPZ3_2056 IPR022761 Fumarate lyase, N-terminal YPZ3_2056 IPR008948 L-Aspartase-like YPZ3_2056 IPR004769 Adenylosuccinate lyase YPZ3_2056 IPR013539 Adenylosuccinate lyase PurB, C-terminal YPZ3_2058 IPR001867 OmpR/PhoB-type DNA-binding domain YPZ3_2058 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2058 IPR011006 CheY-like superfamily YPZ3_2058 IPR039420 Transcriptional regulatory protein WalR-like YPZ3_2058 IPR001789 Signal transduction response regulator, receiver domain YPZ3_2059 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_2059 IPR038429 PhoQ Sensor superfamily YPZ3_2059 IPR015014 PhoQ Sensor YPZ3_2059 IPR005467 Histidine kinase domain YPZ3_2059 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_2059 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_2059 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_2059 IPR003660 HAMP domain YPZ3_2060 IPR003347 JmjC domain YPZ3_2060 IPR039994 JmjC domain-containing YPZ3_2061 IPR036264 Bacterial exopeptidase dimerisation domain YPZ3_2061 IPR002933 Peptidase M20 YPZ3_2061 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPZ3_2061 IPR011650 Peptidase M20, dimerisation domain YPZ3_2061 IPR010161 Peptidase M20B, tripeptide aminopeptidase YPZ3_2062 IPR026590 Sirtuin family, catalytic core domain YPZ3_2062 IPR027546 Sirtuin, class III YPZ3_2062 IPR026591 Sirtuin, catalytic core small domain superfamily YPZ3_2062 IPR003000 Sirtuin family YPZ3_2062 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPZ3_2063 IPR000600 ROK family YPZ3_2064 IPR011926 Lipoprotein-releasing system transmembrane protein LolE, gammaproteobacteria type YPZ3_2064 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E YPZ3_2064 IPR003838 ABC transporter permease protein domain YPZ3_2064 IPR025857 MacB-like periplasmic core domain YPZ3_2065 IPR017871 ABC transporter, conserved site YPZ3_2065 IPR011924 Lipoprotein releasing system, ATP-binding protein YPZ3_2065 IPR015854 ABC transporter, lipoprotein release, LolD YPZ3_2065 IPR003439 ABC transporter-like YPZ3_2065 IPR003593 AAA+ ATPase domain YPZ3_2065 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2066 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E YPZ3_2066 IPR025857 MacB-like periplasmic core domain YPZ3_2066 IPR003838 ABC transporter permease protein domain YPZ3_2067 IPR041471 UvrB, interaction domain YPZ3_2067 IPR005118 Transcription-repair-coupling factor, C-terminal domain YPZ3_2067 IPR037235 TRCF-like, C-terminal domain YPZ3_2067 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2067 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_2067 IPR001650 Helicase, C-terminal YPZ3_2067 IPR004576 Transcription-repair coupling factor YPZ3_2067 IPR011545 DEAD/DEAH box helicase domain YPZ3_2067 IPR003711 CarD-like/TRCF domain YPZ3_2067 IPR036101 CarD-like/TRCF domain superfamily YPZ3_2068 IPR008816 Glycine zipper 2TM domain YPZ3_2069 IPR001207 Transposase, mutator type YPZ3_2072 IPR023753 FAD/NAD(P)-binding domain YPZ3_2072 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_2073 IPR022987 Uncharacterised protein family UPF0227 YPZ3_2073 IPR029058 Alpha/Beta hydrolase fold YPZ3_2073 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YPZ3_2074 IPR022956 Beta-hexosaminidase, bacterial YPZ3_2074 IPR019800 Glycoside hydrolase, family 3, active site YPZ3_2074 IPR001764 Glycoside hydrolase, family 3, N-terminal YPZ3_2074 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily YPZ3_2074 IPR017853 Glycoside hydrolase superfamily YPZ3_2075 IPR002575 Aminoglycoside phosphotransferase YPZ3_2075 IPR011009 Protein kinase-like domain superfamily YPZ3_2075 IPR014093 Thiamine kinase YPZ3_2076 IPR014094 Penicillin-binding protein activator LpoB YPZ3_2076 IPR012640 Membrane lipoprotein, lipid attachment site YPZ3_2077 IPR010824 Protein of unknown function DUF1425 YPZ3_2077 IPR038483 YcfL-like superfamily YPZ3_2078 IPR036265 HIT-like superfamily YPZ3_2078 IPR011146 HIT-like domain YPZ3_2078 IPR001310 Histidine triad (HIT) protein YPZ3_2078 IPR019808 Histidine triad, conserved site YPZ3_2079 IPR036291 NAD(P)-binding domain superfamily YPZ3_2079 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal YPZ3_2081 IPR003352 Phosphotransferase system, EIIC YPZ3_2081 IPR001996 Phosphotransferase system, IIB component, type 1 YPZ3_2081 IPR013013 Phosphotransferase system, EIIC component, type 1 YPZ3_2081 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPZ3_2081 IPR036878 Glucose permease domain IIB YPZ3_2081 IPR011299 PTS system glucose-specific IIBC component YPZ3_2081 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component YPZ3_2082 IPR001130 TatD family YPZ3_2082 IPR032466 Metal-dependent hydrolase YPZ3_2082 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPZ3_2082 IPR015991 Uncharacterised hydrolase TatD-type YPZ3_2083 IPR004622 DNA polymerase III, delta prime subunit YPZ3_2083 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2083 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPZ3_2083 IPR015199 DNA polymerase III, delta subunit, C-terminal YPZ3_2084 IPR039430 Thymidylate kinase-like domain YPZ3_2084 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2084 IPR018094 Thymidylate kinase YPZ3_2084 IPR018095 Thymidylate kinase, conserved site YPZ3_2085 IPR003770 Endolytic murein transglycosylase YPZ3_2086 IPR001544 Aminotransferase class IV YPZ3_2086 IPR018300 Aminotransferase, class IV, conserved site YPZ3_2086 IPR036038 Aminotransferase-like, PLP-dependent enzymes YPZ3_2086 IPR017824 Aminodeoxychorismate lyase, class IV YPZ3_2087 IPR002686 Transposase IS200-like YPZ3_2087 IPR036515 Transposase IS200-like superfamily YPZ3_2088 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPZ3_2088 IPR014030 Beta-ketoacyl synthase, N-terminal YPZ3_2088 IPR000794 Beta-ketoacyl synthase YPZ3_2088 IPR016039 Thiolase-like YPZ3_2088 IPR018201 Beta-ketoacyl synthase, active site YPZ3_2088 IPR014031 Beta-ketoacyl synthase, C-terminal YPZ3_2088 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPZ3_2089 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YPZ3_2089 IPR036291 NAD(P)-binding domain superfamily YPZ3_2089 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPZ3_2089 IPR002347 Short-chain dehydrogenase/reductase SDR YPZ3_2090 IPR001227 Acyl transferase domain superfamily YPZ3_2090 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type YPZ3_2090 IPR024925 Malonyl CoA-acyl carrier protein transacylase YPZ3_2090 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPZ3_2090 IPR014043 Acyl transferase YPZ3_2090 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPZ3_2091 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPZ3_2091 IPR016039 Thiolase-like YPZ3_2091 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 YPZ3_2091 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal YPZ3_2092 IPR003664 Fatty acid synthesis PlsX protein YPZ3_2092 IPR012281 Phospholipid biosynthesis protein, PlsX-like YPZ3_2093 IPR003772 Large ribosomal RNA subunit accumulation protein YceD YPZ3_2093 IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria YPZ3_2094 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein YPZ3_2094 IPR029001 Inosine triphosphate pyrophosphatase-like YPZ3_2096 IPR006145 Pseudouridine synthase, RsuA/RluA YPZ3_2096 IPR036986 RNA-binding S4 domain superfamily YPZ3_2096 IPR002942 RNA-binding S4 domain YPZ3_2096 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPZ3_2096 IPR006225 Pseudouridine synthase, RluC/RluD YPZ3_2096 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPZ3_2097 IPR021968 Polyribonucleotide phosphorylase C-terminal YPZ3_2097 IPR012340 Nucleic acid-binding, OB-fold YPZ3_2097 IPR003029 S1 domain YPZ3_2097 IPR028878 Ribonuclease E YPZ3_2097 IPR004659 Ribonuclease E/G YPZ3_2097 IPR022967 RNA-binding domain, S1 YPZ3_2097 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G YPZ3_2098 IPR001207 Transposase, mutator type YPZ3_2099 IPR006680 Amidohydrolase-related YPZ3_2099 IPR032466 Metal-dependent hydrolase YPZ3_2099 IPR002195 Dihydroorotase, conserved site YPZ3_2099 IPR004721 Dihydroorotase homodimeric type YPZ3_2100 IPR001207 Transposase, mutator type YPZ3_2101 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_2101 IPR023493 N-methyl-L-tryptophan oxidase MTOX YPZ3_2101 IPR006076 FAD dependent oxidoreductase YPZ3_2102 IPR000792 Transcription regulator LuxR, C-terminal YPZ3_2102 IPR001789 Signal transduction response regulator, receiver domain YPZ3_2102 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_2103 IPR002549 Transmembrane protein TqsA-like YPZ3_2106 IPR016181 Acyl-CoA N-acyltransferase YPZ3_2106 IPR001690 Autoinducer synthase YPZ3_2106 IPR018311 Autoinducer synthesis, conserved site YPZ3_2107 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YPZ3_2107 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_2107 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2107 IPR000792 Transcription regulator LuxR, C-terminal YPZ3_2107 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YPZ3_2108 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_2108 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2108 IPR005119 LysR, substrate-binding YPZ3_2108 IPR000847 Transcription regulator HTH, LysR YPZ3_2109 IPR020846 Major facilitator superfamily domain YPZ3_2109 IPR005828 Major facilitator, sugar transporter-like YPZ3_2109 IPR036259 MFS transporter superfamily YPZ3_2109 IPR005829 Sugar transporter, conserved site YPZ3_2111 IPR023210 NADP-dependent oxidoreductase domain YPZ3_2111 IPR036812 NADP-dependent oxidoreductase domain superfamily YPZ3_2111 IPR020471 Aldo/keto reductase YPZ3_2112 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST YPZ3_2113 IPR013399 CRISPR-associated protein Csy3 YPZ3_2114 IPR013398 CRISPR-associated protein Csy2 YPZ3_2115 IPR013397 CRISPR-associated protein Csy1 YPZ3_2116 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2116 IPR006483 CRISPR-associated Cas3-type HD domain YPZ3_2116 IPR038257 CRISPR-associated Cas3-type HD domain superfamily YPZ3_2116 IPR013395 Helicase Cas3, CRISPR-associated, Yersinia-type YPZ3_2117 IPR042206 CRISPR-associated endonuclease Cas1, C-terminal domain YPZ3_2117 IPR019857 CRISPR-associated protein Cas1, YPEST subtype YPZ3_2117 IPR002729 CRISPR-associated protein Cas1 YPZ3_2117 IPR042211 CRISPR-associated endonuclease Cas1, N-terminal domain YPZ3_2118 IPR006685 Mechanosensitive ion channel MscS YPZ3_2118 IPR010920 LSM domain superfamily YPZ3_2118 IPR030192 Miniconductance mechanosensitive channel YbdG YPZ3_2118 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPZ3_2122 IPR028583 4-O-beta-D-mannosyl-D-glucose phosphorylase YPZ3_2122 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily YPZ3_2122 IPR007184 Mannoside phosphorylase YPZ3_2123 IPR035906 MetI-like superfamily YPZ3_2123 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2124 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2124 IPR035906 MetI-like superfamily YPZ3_2126 IPR000843 LacI-type HTH domain YPZ3_2126 IPR028082 Periplasmic binding protein-like I YPZ3_2126 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_2127 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPZ3_2127 IPR005841 Alpha-D-phosphohexomutase superfamily YPZ3_2127 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPZ3_2127 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YPZ3_2127 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPZ3_2127 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPZ3_2127 IPR016066 Alpha-D-phosphohexomutase, conserved site YPZ3_2127 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPZ3_2128 IPR003439 ABC transporter-like YPZ3_2128 IPR017871 ABC transporter, conserved site YPZ3_2128 IPR015855 ABC transporter, maltose/maltodextrin import, MalK YPZ3_2128 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_2128 IPR040582 MalK, OB fold domain YPZ3_2128 IPR003593 AAA+ ATPase domain YPZ3_2128 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2130 IPR038181 Novel toxin 21 superfamily YPZ3_2130 IPR008619 Filamentous haemagglutinin repeat YPZ3_2130 IPR006914 VENN motif-containing domain YPZ3_2130 IPR008638 Filamentous haemagglutinin, N-terminal YPZ3_2130 IPR025157 Hemagglutinin repeat YPZ3_2130 IPR028190 Novel toxin 21 YPZ3_2130 IPR012334 Pectin lyase fold YPZ3_2130 IPR011050 Pectin lyase fold/virulence factor YPZ3_2130 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPZ3_2131 IPR025157 Hemagglutinin repeat YPZ3_2131 IPR006914 VENN motif-containing domain YPZ3_2131 IPR011050 Pectin lyase fold/virulence factor YPZ3_2131 IPR024973 ESPR domain YPZ3_2131 IPR012334 Pectin lyase fold YPZ3_2131 IPR008638 Filamentous haemagglutinin, N-terminal YPZ3_2131 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPZ3_2133 IPR008638 Filamentous haemagglutinin, N-terminal YPZ3_2133 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPZ3_2133 IPR006914 VENN motif-containing domain YPZ3_2133 IPR011050 Pectin lyase fold/virulence factor YPZ3_2133 IPR012334 Pectin lyase fold YPZ3_2133 IPR025157 Hemagglutinin repeat YPZ3_2133 IPR024973 ESPR domain YPZ3_2134 IPR027282 Two partner secretion pathway transporter YPZ3_2134 IPR034746 POTRA domain YPZ3_2134 IPR013686 Polypeptide-transport-associated, ShlB-type YPZ3_2134 IPR005565 Haemolysin activator HlyB, C-terminal YPZ3_2134 IPR035251 ShlB, POTRA domain YPZ3_2135 IPR017938 Riboflavin synthase-like beta-barrel YPZ3_2135 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPZ3_2135 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPZ3_2135 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPZ3_2135 IPR017927 FAD-binding domain, ferredoxin reductase-type YPZ3_2135 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPZ3_2135 IPR039003 Carnitine monooxygenase reductase subunit YPZ3_2135 IPR012675 Beta-grasp domain superfamily YPZ3_2135 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPZ3_2135 IPR036010 2Fe-2S ferredoxin-like superfamily YPZ3_2135 IPR000951 Phthalate dioxygenase reductase YPZ3_2136 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily YPZ3_2136 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain YPZ3_2136 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site YPZ3_2136 IPR017941 Rieske [2Fe-2S] iron-sulphur domain YPZ3_2136 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit YPZ3_2136 IPR039004 Carnitine monooxygenase oxygenase subunit YPZ3_2137 IPR000060 BCCT transporter family YPZ3_2137 IPR018093 BCCT transporter, conserved site YPZ3_2138 IPR024084 Isopropylmalate dehydrogenase-like domain YPZ3_2138 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPZ3_2138 IPR011829 Tartrate dehydrogenase YPZ3_2139 IPR000847 Transcription regulator HTH, LysR YPZ3_2139 IPR005119 LysR, substrate-binding YPZ3_2139 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_2139 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2140 IPR000843 LacI-type HTH domain YPZ3_2140 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_2140 IPR028082 Periplasmic binding protein-like I YPZ3_2141 IPR001851 ABC transporter, permease YPZ3_2142 IPR003593 AAA+ ATPase domain YPZ3_2142 IPR003439 ABC transporter-like YPZ3_2142 IPR017871 ABC transporter, conserved site YPZ3_2142 IPR015861 ABC transporter, ribose import, RbsA YPZ3_2142 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2143 IPR028082 Periplasmic binding protein-like I YPZ3_2143 IPR025997 Periplasmic binding protein YPZ3_2144 IPR013149 Alcohol dehydrogenase, C-terminal YPZ3_2144 IPR013154 Alcohol dehydrogenase, N-terminal YPZ3_2144 IPR011032 GroES-like superfamily YPZ3_2144 IPR020843 Polyketide synthase, enoylreductase domain YPZ3_2144 IPR036291 NAD(P)-binding domain superfamily YPZ3_2148 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPZ3_2148 IPR027385 Outer membrane protein beta-barrel domain YPZ3_2148 IPR000758 Virulence-related outer membrane protein YPZ3_2149 IPR000620 EamA domain YPZ3_2151 IPR023506 Trans-aconitate 2-methyltransferase YPZ3_2151 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_2151 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal YPZ3_2151 IPR041698 Methyltransferase domain 25 YPZ3_2152 IPR012347 Ferritin-like YPZ3_2152 IPR009078 Ferritin-like superfamily YPZ3_2152 IPR008331 Ferritin/DPS protein domain YPZ3_2152 IPR023188 DNA-binding protein Dps, conserved site YPZ3_2152 IPR023067 DNA protection during starvation protein, gammaproteobacteria YPZ3_2152 IPR002177 DNA-binding protein Dps YPZ3_2154 IPR018313 Solute-binding protein family 3, conserved site YPZ3_2154 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPZ3_2154 IPR001320 Ionotropic glutamate receptor YPZ3_2155 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPZ3_2155 IPR035906 MetI-like superfamily YPZ3_2155 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2156 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2156 IPR003439 ABC transporter-like YPZ3_2156 IPR003593 AAA+ ATPase domain YPZ3_2156 IPR017871 ABC transporter, conserved site YPZ3_2156 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPZ3_2157 IPR004090 Chemotaxis methyl-accepting receptor YPZ3_2157 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_2157 IPR001610 PAC motif YPZ3_2157 IPR000700 PAS-associated, C-terminal YPZ3_2157 IPR035965 PAS domain superfamily YPZ3_2157 IPR013655 PAS fold-3 YPZ3_2157 IPR000014 PAS domain YPZ3_2158 IPR036397 Ribonuclease H superfamily YPZ3_2158 IPR017894 HTH domain, IS21 transposase-type YPZ3_2158 IPR001584 Integrase, catalytic core YPZ3_2158 IPR012337 Ribonuclease H-like superfamily YPZ3_2158 IPR006120 Resolvase, HTH domain YPZ3_2159 IPR001270 ClpA/B family YPZ3_2159 IPR003593 AAA+ ATPase domain YPZ3_2159 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2159 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_2159 IPR002611 IstB-like ATP-binding protein YPZ3_2160 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_2160 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain YPZ3_2160 IPR005467 Histidine kinase domain YPZ3_2160 IPR007895 MASE1 YPZ3_2160 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_2161 IPR000849 Sugar phosphate transporter YPZ3_2161 IPR020846 Major facilitator superfamily domain YPZ3_2161 IPR011701 Major facilitator superfamily YPZ3_2161 IPR036259 MFS transporter superfamily YPZ3_2161 IPR021159 Glycerate/sugar phosphate transporter, conserved site YPZ3_2162 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPZ3_2162 IPR008619 Filamentous haemagglutinin repeat YPZ3_2162 IPR012334 Pectin lyase fold YPZ3_2162 IPR011050 Pectin lyase fold/virulence factor YPZ3_2162 IPR008638 Filamentous haemagglutinin, N-terminal YPZ3_2162 IPR025157 Hemagglutinin repeat YPZ3_2162 IPR006626 Parallel beta-helix repeat YPZ3_2162 IPR006914 VENN motif-containing domain YPZ3_2163 IPR013686 Polypeptide-transport-associated, ShlB-type YPZ3_2163 IPR005565 Haemolysin activator HlyB, C-terminal YPZ3_2163 IPR034746 POTRA domain YPZ3_2163 IPR035251 ShlB, POTRA domain YPZ3_2163 IPR027282 Two partner secretion pathway transporter YPZ3_2164 IPR000914 Solute-binding protein family 5 domain YPZ3_2164 IPR023765 Solute-binding protein family 5, conserved site YPZ3_2164 IPR030678 Peptide/nickel binding protein, MppA-type YPZ3_2164 IPR039424 Solute-binding protein family 5 YPZ3_2165 IPR035906 MetI-like superfamily YPZ3_2165 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2166 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPZ3_2166 IPR035906 MetI-like superfamily YPZ3_2166 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2167 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPZ3_2167 IPR003439 ABC transporter-like YPZ3_2167 IPR003593 AAA+ ATPase domain YPZ3_2167 IPR017871 ABC transporter, conserved site YPZ3_2167 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2168 IPR003593 AAA+ ATPase domain YPZ3_2168 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2168 IPR003439 ABC transporter-like YPZ3_2168 IPR017871 ABC transporter, conserved site YPZ3_2168 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPZ3_2169 IPR002037 Glycoside hydrolase, family 8 YPZ3_2169 IPR008928 Six-hairpin glycosidase superfamily YPZ3_2169 IPR019834 Glycoside hydrolase, family 8, conserved site YPZ3_2169 IPR012341 Six-hairpin glycosidase-like superfamily YPZ3_2170 IPR029787 Nucleotide cyclase YPZ3_2170 IPR000160 GGDEF domain YPZ3_2170 IPR033419 Gammaproteobacterial periplasmic sensor domain GAPES3 YPZ3_2170 IPR035919 EAL domain superfamily YPZ3_2170 IPR003660 HAMP domain YPZ3_2170 IPR001633 EAL domain YPZ3_2171 IPR009331 Oligogalacturonate-specific porin YPZ3_2172 IPR010702 Periplasmic pectate lyase YPZ3_2174 IPR036458 Sodium:dicarboxylate symporter superfamily YPZ3_2174 IPR018107 Sodium:dicarboxylate symporter, conserved site YPZ3_2174 IPR001991 Sodium:dicarboxylate symporter YPZ3_2174 IPR023954 C4-dicarboxylate transport protein YPZ3_2175 IPR011765 Peptidase M16, N-terminal YPZ3_2175 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPZ3_2175 IPR007863 Peptidase M16, C-terminal YPZ3_2176 IPR011611 Carbohydrate kinase PfkB YPZ3_2176 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPZ3_2176 IPR029056 Ribokinase-like YPZ3_2177 IPR035919 EAL domain superfamily YPZ3_2177 IPR001633 EAL domain YPZ3_2178 IPR007844 AsmA YPZ3_2179 IPR003763 CDP-diacylglycerol pyrophosphatase YPZ3_2179 IPR038433 CDP-diacylglycerol pyrophosphatase superfamily YPZ3_2179 IPR036265 HIT-like superfamily YPZ3_2180 IPR005274 Inner membrane protein YhjD YPZ3_2180 IPR017039 Virulence factor BrkB YPZ3_2185 IPR018197 Glycerate kinase, restriction-enzyme-like fold YPZ3_2185 IPR036129 Glycerate kinase superfamily YPZ3_2185 IPR004381 Glycerate kinase YPZ3_2185 IPR018193 Glycerate kinase, flavodoxin-like fold YPZ3_2186 IPR003474 Gluconate transporter YPZ3_2187 IPR008599 Putative sugar diacid recognition YPZ3_2187 IPR042070 PucR C-terminal helix-turn-helix domain superfamily YPZ3_2187 IPR041522 CdaR, GGDEF-like domain YPZ3_2187 IPR025736 PucR C-terminal helix-turn-helix domain YPZ3_2188 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YPZ3_2188 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YPZ3_2188 IPR006322 Glutathione reductase, eukaryote/bacterial YPZ3_2188 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPZ3_2188 IPR023753 FAD/NAD(P)-binding domain YPZ3_2188 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_2188 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPZ3_2189 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPZ3_2189 IPR007473 Ribosomal RNA large subunit methyltransferase J YPZ3_2189 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_2190 IPR001567 Peptidase M3A/M3B catalytic domain YPZ3_2190 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 YPZ3_2191 IPR007536 Ribosomal RNA small subunit methyltransferase J YPZ3_2191 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_2192 IPR034033 Serralysin-like metallopeptidase domain YPZ3_2192 IPR013858 Peptidase M10 serralysin, C-terminal YPZ3_2192 IPR006026 Peptidase, metallopeptidase YPZ3_2192 IPR016294 Peptidase M10B YPZ3_2192 IPR018511 Hemolysin-type calcium-binding conserved site YPZ3_2192 IPR024079 Metallopeptidase, catalytic domain superfamily YPZ3_2192 IPR001343 RTX calcium-binding nonapeptide repeat YPZ3_2192 IPR001818 Peptidase M10, metallopeptidase YPZ3_2192 IPR011049 Serralysin-like metalloprotease, C-terminal YPZ3_2193 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase YPZ3_2193 IPR033524 Leu/Phe/Val dehydrogenases active site YPZ3_2193 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YPZ3_2193 IPR036291 NAD(P)-binding domain superfamily YPZ3_2193 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain YPZ3_2193 IPR033922 NAD(P) binding domain of glutamate dehydrogenase YPZ3_2193 IPR014362 Glutamate dehydrogenase YPZ3_2194 IPR006016 UspA YPZ3_2194 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2194 IPR006015 Universal stress protein A family YPZ3_2195 IPR019598 Universal stress protein B YPZ3_2197 IPR001204 Phosphate transporter YPZ3_2198 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_2198 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like YPZ3_2198 IPR023166 HI0933-like insert domain superfamily YPZ3_2199 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_2199 IPR001789 Signal transduction response regulator, receiver domain YPZ3_2199 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_2199 IPR013656 PAS fold-4 YPZ3_2199 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_2199 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_2199 IPR005467 Histidine kinase domain YPZ3_2199 IPR011006 CheY-like superfamily YPZ3_2199 IPR035965 PAS domain superfamily YPZ3_2199 IPR000014 PAS domain YPZ3_2199 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_2200 IPR015861 ABC transporter, ribose import, RbsA YPZ3_2200 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2200 IPR017871 ABC transporter, conserved site YPZ3_2200 IPR003439 ABC transporter-like YPZ3_2200 IPR003593 AAA+ ATPase domain YPZ3_2201 IPR001851 ABC transporter, permease YPZ3_2202 IPR028082 Periplasmic binding protein-like I YPZ3_2202 IPR025997 Periplasmic binding protein YPZ3_2204 IPR013785 Aldolase-type TIM barrel YPZ3_2204 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 YPZ3_2204 IPR000771 Fructose-bisphosphate aldolase, class-II YPZ3_2206 IPR039420 Transcriptional regulatory protein WalR-like YPZ3_2206 IPR001789 Signal transduction response regulator, receiver domain YPZ3_2206 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_2206 IPR001867 OmpR/PhoB-type DNA-binding domain YPZ3_2206 IPR011006 CheY-like superfamily YPZ3_2206 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2207 IPR003829 Pirin, N-terminal domain YPZ3_2207 IPR012093 Pirin YPZ3_2207 IPR011051 RmlC-like cupin domain superfamily YPZ3_2207 IPR014710 RmlC-like jelly roll fold YPZ3_2207 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain YPZ3_2208 IPR000843 LacI-type HTH domain YPZ3_2208 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_2208 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPZ3_2208 IPR028082 Periplasmic binding protein-like I YPZ3_2209 IPR003474 Gluconate transporter YPZ3_2210 IPR006001 Carbohydrate kinase, thermoresistant glucokinase YPZ3_2210 IPR031322 Shikimate kinase/gluconokinase YPZ3_2210 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2212 IPR002771 Multiple antibiotic resistance (MarC)-related YPZ3_2213 IPR012080 Aspartate-semialdehyde dehydrogenase YPZ3_2213 IPR036291 NAD(P)-binding domain superfamily YPZ3_2213 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPZ3_2213 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPZ3_2213 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type YPZ3_2213 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site YPZ3_2214 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPZ3_2214 IPR015217 Invasin, domain 3 YPZ3_2214 IPR008964 Invasin/intimin cell-adhesion fragments YPZ3_2214 IPR013117 Intimin, C-terminal YPZ3_2214 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPZ3_2214 IPR013783 Immunoglobulin-like fold YPZ3_2214 IPR038177 Inverse autotransporter, beta-domain superfamily YPZ3_2214 IPR016187 C-type lectin fold YPZ3_2214 IPR024519 Inverse autotransporter, beta-domain YPZ3_2214 IPR016186 C-type lectin-like/link domain superfamily YPZ3_2215 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region YPZ3_2215 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_2215 IPR003018 GAF domain YPZ3_2215 IPR010559 Signal transduction histidine kinase, internal region YPZ3_2216 IPR013780 Glycosyl hydrolase, all-beta YPZ3_2216 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB YPZ3_2216 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta YPZ3_2216 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPZ3_2216 IPR004193 Glycoside hydrolase, family 13, N-terminal YPZ3_2216 IPR037439 1,4-alpha-glucan-branching enzyme YPZ3_2216 IPR013783 Immunoglobulin-like fold YPZ3_2216 IPR014756 Immunoglobulin E-set YPZ3_2216 IPR017853 Glycoside hydrolase superfamily YPZ3_2217 IPR013783 Immunoglobulin-like fold YPZ3_2217 IPR014756 Immunoglobulin E-set YPZ3_2217 IPR022844 Glycogen debranching enzyme, bacterial YPZ3_2217 IPR013780 Glycosyl hydrolase, all-beta YPZ3_2217 IPR004193 Glycoside hydrolase, family 13, N-terminal YPZ3_2217 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPZ3_2217 IPR017853 Glycoside hydrolase superfamily YPZ3_2217 IPR040784 Glycogen debranching enzyme, C-terminal domain YPZ3_2217 IPR011837 Glycogen debranching enzyme, GlgX type YPZ3_2218 IPR011831 Glucose-1-phosphate adenylyltransferase YPZ3_2218 IPR005835 Nucleotidyl transferase domain YPZ3_2218 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial YPZ3_2218 IPR005836 ADP-glucose pyrophosphorylase, conserved site YPZ3_2218 IPR011004 Trimeric LpxA-like superfamily YPZ3_2218 IPR029044 Nucleotide-diphospho-sugar transferases YPZ3_2219 IPR001296 Glycosyl transferase, family 1 YPZ3_2219 IPR011835 Bacterial/plant glycogen synthase YPZ3_2219 IPR013534 Starch synthase, catalytic domain YPZ3_2220 IPR000811 Glycosyl transferase, family 35 YPZ3_2220 IPR035090 Phosphorylase pyridoxal-phosphate attachment site YPZ3_2220 IPR011833 Glycogen/starch/alpha-glucan phosphorylase YPZ3_2221 IPR006076 FAD dependent oxidoreductase YPZ3_2221 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily YPZ3_2221 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase YPZ3_2221 IPR031656 Alpha-glycerophosphate oxidase, C-terminal YPZ3_2221 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_2223 IPR036397 Ribonuclease H superfamily YPZ3_2223 IPR038965 Transposase InsF-like YPZ3_2223 IPR001584 Integrase, catalytic core YPZ3_2223 IPR012337 Ribonuclease H-like superfamily YPZ3_2223 IPR025948 HTH-like domain YPZ3_2225 IPR036397 Ribonuclease H superfamily YPZ3_2225 IPR012337 Ribonuclease H-like superfamily YPZ3_2225 IPR006120 Resolvase, HTH domain YPZ3_2225 IPR001584 Integrase, catalytic core YPZ3_2225 IPR017894 HTH domain, IS21 transposase-type YPZ3_2226 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_2226 IPR001270 ClpA/B family YPZ3_2226 IPR003593 AAA+ ATPase domain YPZ3_2226 IPR002611 IstB-like ATP-binding protein YPZ3_2226 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2227 IPR010286 METTL16/RlmF family YPZ3_2227 IPR016909 Ribosomal RNA large subunit methyltransferase F YPZ3_2227 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_2228 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily YPZ3_2228 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily YPZ3_2228 IPR017459 Glycosyl transferase family 3, N-terminal domain YPZ3_2229 IPR000873 AMP-dependent synthetase/ligase YPZ3_2229 IPR020845 AMP-binding, conserved site YPZ3_2229 IPR025110 AMP-binding enzyme, C-terminal domain YPZ3_2229 IPR042099 AMP-dependent synthetase-like superfamily YPZ3_2229 IPR010192 2-succinylbenzoate--CoA ligase YPZ3_2230 IPR036849 Enolase-like, C-terminal domain superfamily YPZ3_2230 IPR029017 Enolase-like, N-terminal YPZ3_2230 IPR029065 Enolase C-terminal domain-like YPZ3_2230 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPZ3_2230 IPR010196 o-Succinylbenzoate synthase, MenC type1 YPZ3_2231 IPR014748 Enoyl-CoA hydratase, C-terminal YPZ3_2231 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPZ3_2231 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB YPZ3_2231 IPR029045 ClpP/crotonase-like domain superfamily YPZ3_2231 IPR001753 Enoyl-CoA hydratase/isomerase YPZ3_2232 IPR029058 Alpha/Beta hydrolase fold YPZ3_2232 IPR000073 Alpha/beta hydrolase fold-1 YPZ3_2232 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase YPZ3_2233 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPZ3_2233 IPR029061 Thiamin diphosphate-binding fold YPZ3_2233 IPR032264 Menaquinone biosynthesis protein MenD, middle domain YPZ3_2233 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase YPZ3_2233 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPZ3_2234 IPR034681 Isochorismate synthase MenF YPZ3_2234 IPR005801 ADC synthase YPZ3_2234 IPR015890 Chorismate-utilising enzyme, C-terminal YPZ3_2234 IPR004561 Isochorismate synthase YPZ3_2236 IPR010279 Inner membrane protein YqjD/ElaB YPZ3_2237 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site YPZ3_2237 IPR004786 6-phosphogluconate dehydratase YPZ3_2237 IPR042096 Dihydroxy-acid dehydratase, C-terminal YPZ3_2237 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase YPZ3_2237 IPR037237 IlvD/EDD, N-terminal domain YPZ3_2238 IPR010371 Uncharacterised protein family UPF0303 YPZ3_2238 IPR005624 Haem-degrading YPZ3_2238 IPR038084 GlcG-like domain superfamily YPZ3_2239 IPR011701 Major facilitator superfamily YPZ3_2239 IPR020846 Major facilitator superfamily domain YPZ3_2239 IPR036259 MFS transporter superfamily YPZ3_2240 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPZ3_2240 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_2240 IPR036291 NAD(P)-binding domain superfamily YPZ3_2241 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_2241 IPR000843 LacI-type HTH domain YPZ3_2241 IPR028082 Periplasmic binding protein-like I YPZ3_2243 IPR002347 Short-chain dehydrogenase/reductase SDR YPZ3_2243 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPZ3_2243 IPR036291 NAD(P)-binding domain superfamily YPZ3_2244 IPR031322 Shikimate kinase/gluconokinase YPZ3_2244 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2244 IPR006001 Carbohydrate kinase, thermoresistant glucokinase YPZ3_2245 IPR004375 YhcH/YjgK/YiaL family YPZ3_2245 IPR037012 YhcH/YjgK/YiaL superfamily YPZ3_2247 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 YPZ3_2247 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit YPZ3_2248 IPR010227 NADH-quinone oxidoreductase, chain M/4 YPZ3_2248 IPR003918 NADH:ubiquinone oxidoreductase YPZ3_2248 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit YPZ3_2249 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal YPZ3_2249 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit YPZ3_2249 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup YPZ3_2249 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 YPZ3_2250 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like YPZ3_2250 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K YPZ3_2251 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 YPZ3_2251 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ YPZ3_2252 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_2252 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPZ3_2252 IPR010226 NADH-quinone oxidoreductase, chain I YPZ3_2253 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H YPZ3_2253 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site YPZ3_2254 IPR009010 Aspartate decarboxylase-like domain superfamily YPZ3_2254 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding YPZ3_2254 IPR010228 NADH:ubiquinone oxidoreductase, subunit G YPZ3_2254 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site YPZ3_2254 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPZ3_2254 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPZ3_2254 IPR006656 Molybdopterin oxidoreductase YPZ3_2254 IPR036010 2Fe-2S ferredoxin-like superfamily YPZ3_2254 IPR006657 Molybdopterin dinucleotide-binding domain YPZ3_2255 IPR019554 Soluble ligand binding domain YPZ3_2255 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain YPZ3_2255 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily YPZ3_2255 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily YPZ3_2255 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain YPZ3_2255 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site YPZ3_2255 IPR011537 NADH ubiquinone oxidoreductase, F subunit YPZ3_2256 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal YPZ3_2256 IPR042128 NuoE domain YPZ3_2256 IPR036249 Thioredoxin-like superfamily YPZ3_2256 IPR002023 NADH-quinone oxidoreductase subunit E-like YPZ3_2257 IPR029014 [NiFe]-hydrogenase, large subunit YPZ3_2257 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily YPZ3_2257 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site YPZ3_2257 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit YPZ3_2257 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily YPZ3_2257 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H YPZ3_2257 IPR023062 NADH dehydrogenase, subunit CD YPZ3_2257 IPR010218 NADH dehydrogenase, subunit C YPZ3_2257 IPR001135 NADH-quinone oxidoreductase, subunit D YPZ3_2258 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit YPZ3_2258 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit YPZ3_2259 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid YPZ3_2259 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily YPZ3_2259 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 YPZ3_2260 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_2260 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2260 IPR005119 LysR, substrate-binding YPZ3_2260 IPR000847 Transcription regulator HTH, LysR YPZ3_2261 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_2261 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_2261 IPR004839 Aminotransferase, class I/classII YPZ3_2261 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_2262 IPR003607 HD/PDEase domain YPZ3_2262 IPR022971 5'-deoxynucleotidase YfbR YPZ3_2262 IPR039356 Metal-dependent nucleoside 5'-monophosphatase YPZ3_2263 IPR004680 Citrate transporter-like domain YPZ3_2263 IPR031312 Sodium/sulphate symporter, conserved site YPZ3_2263 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YPZ3_2263 IPR006037 Regulator of K+ conductance, C-terminal YPZ3_2264 IPR006439 HAD hydrolase, subfamily IA YPZ3_2264 IPR036412 HAD-like superfamily YPZ3_2264 IPR041492 Haloacid dehalogenase-like hydrolase YPZ3_2264 IPR023214 HAD superfamily YPZ3_2264 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPZ3_2265 IPR005587 Uncharacterised protein family UPF0304, YfbU YPZ3_2265 IPR023146 YfbU, alpha-helical bundle domain superfamily YPZ3_2265 IPR023145 YfbU, helix-hairpin domain superfamily YPZ3_2266 IPR007334 Uncharacterised protein family UPF0208 YPZ3_2267 IPR023865 Aliphatic acid kinase, short-chain, conserved site YPZ3_2267 IPR004372 Acetate/propionate kinase YPZ3_2267 IPR000890 Aliphatic acid kinase, short-chain YPZ3_2268 IPR042112 Phosphate acetyltransferase, domain 2 YPZ3_2268 IPR016475 Phosphate acetyltransferase, bacteria YPZ3_2268 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2268 IPR004614 Phosphate acetyltransferase YPZ3_2268 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily YPZ3_2268 IPR002505 Phosphate acetyl/butaryl transferase YPZ3_2268 IPR042113 Phosphate acetyltransferase, domain 1 YPZ3_2268 IPR010766 DRTGG YPZ3_2269 IPR000843 LacI-type HTH domain YPZ3_2269 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_2269 IPR028082 Periplasmic binding protein-like I YPZ3_2269 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPZ3_2270 IPR016152 Phosphotransferase/anion transporter YPZ3_2270 IPR002178 PTS EIIA type-2 domain YPZ3_2271 IPR001207 Transposase, mutator type YPZ3_2272 IPR009647 Penicillin-binding, C-terminal YPZ3_2272 IPR023346 Lysozyme-like domain superfamily YPZ3_2272 IPR001264 Glycosyl transferase, family 51 YPZ3_2272 IPR012338 Beta-lactamase/transpeptidase-like YPZ3_2272 IPR011815 Penicillin-binding protein 1C YPZ3_2272 IPR001460 Penicillin-binding protein, transpeptidase YPZ3_2272 IPR036950 Penicillin binding protein transglycosylase domain YPZ3_2273 IPR041246 Bacterial alpha-2-macroglobulin MG10 domain YPZ3_2273 IPR001599 Alpha-2-macroglobulin YPZ3_2273 IPR002890 Macroglobulin domain YPZ3_2273 IPR021868 Alpha-2-macroglobulin MG3 domain YPZ3_2273 IPR011625 Alpha-2-macroglobulin, bait region domain YPZ3_2273 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid YPZ3_2273 IPR041203 Bacterial Alpha-2-macroglobulin, MG5 domain YPZ3_2273 IPR041462 Bacterial Alpha-2-macroglobulin, MG6 domain YPZ3_2276 IPR015590 Aldehyde dehydrogenase domain YPZ3_2276 IPR010061 Methylmalonate-semialdehyde dehydrogenase YPZ3_2276 IPR016162 Aldehyde dehydrogenase, N-terminal YPZ3_2276 IPR016160 Aldehyde dehydrogenase, cysteine active site YPZ3_2276 IPR016163 Aldehyde dehydrogenase, C-terminal YPZ3_2276 IPR016161 Aldehyde/histidinol dehydrogenase YPZ3_2277 IPR000399 TPP-binding enzyme, conserved site YPZ3_2277 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPZ3_2277 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPZ3_2277 IPR023757 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, Firmicutes YPZ3_2277 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase YPZ3_2277 IPR012000 Thiamine pyrophosphate enzyme, central domain YPZ3_2277 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPZ3_2277 IPR029061 Thiamin diphosphate-binding fold YPZ3_2278 IPR000683 Oxidoreductase, N-terminal YPZ3_2278 IPR036291 NAD(P)-binding domain superfamily YPZ3_2278 IPR030827 Inositol 2-dehydrogenase YPZ3_2278 IPR004104 Oxidoreductase, C-terminal YPZ3_2279 IPR000683 Oxidoreductase, N-terminal YPZ3_2279 IPR036291 NAD(P)-binding domain superfamily YPZ3_2279 IPR030827 Inositol 2-dehydrogenase YPZ3_2279 IPR004104 Oxidoreductase, C-terminal YPZ3_2280 IPR028082 Periplasmic binding protein-like I YPZ3_2280 IPR025997 Periplasmic binding protein YPZ3_2281 IPR003439 ABC transporter-like YPZ3_2281 IPR017871 ABC transporter, conserved site YPZ3_2281 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2281 IPR015861 ABC transporter, ribose import, RbsA YPZ3_2281 IPR003593 AAA+ ATPase domain YPZ3_2282 IPR001851 ABC transporter, permease YPZ3_2283 IPR004104 Oxidoreductase, C-terminal YPZ3_2283 IPR030827 Inositol 2-dehydrogenase YPZ3_2283 IPR036291 NAD(P)-binding domain superfamily YPZ3_2283 IPR000683 Oxidoreductase, N-terminal YPZ3_2284 IPR022841 5-dehydro-2-deoxygluconokinase, Firmicutes YPZ3_2284 IPR030830 5-Dehydro-2-deoxygluconokinase YPZ3_2284 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily YPZ3_2284 IPR011611 Carbohydrate kinase PfkB YPZ3_2284 IPR029056 Ribokinase-like YPZ3_2284 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPZ3_2285 IPR030823 IolE/MocC family YPZ3_2285 IPR036237 Xylose isomerase-like superfamily YPZ3_2285 IPR013022 Xylose isomerase-like, TIM barrel domain YPZ3_2286 IPR024203 5-deoxy-glucuronate isomerase, IolB YPZ3_2286 IPR014710 RmlC-like jelly roll fold YPZ3_2286 IPR011051 RmlC-like cupin domain superfamily YPZ3_2286 IPR023770 5-deoxy-glucuronate isomerase, Bacilli YPZ3_2286 IPR021120 KduI/IolB isomerase YPZ3_2288 IPR003439 ABC transporter-like YPZ3_2288 IPR003593 AAA+ ATPase domain YPZ3_2288 IPR017871 ABC transporter, conserved site YPZ3_2288 IPR011527 ABC transporter type 1, transmembrane domain YPZ3_2288 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2288 IPR039421 Type I protein exporter YPZ3_2288 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPZ3_2290 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_2290 IPR000792 Transcription regulator LuxR, C-terminal YPZ3_2292 IPR003691 Putative fluoride ion transporter CrcB YPZ3_2293 IPR003698 Lipoyl synthase YPZ3_2293 IPR031691 Lipoyl synthase, N-terminal YPZ3_2293 IPR006638 Elp3/MiaB/NifB YPZ3_2293 IPR013785 Aldolase-type TIM barrel YPZ3_2293 IPR007197 Radical SAM YPZ3_2294 IPR020605 Octanoyltransferase, conserved site YPZ3_2294 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain YPZ3_2294 IPR000544 Octanoyltransferase YPZ3_2295 IPR012338 Beta-lactamase/transpeptidase-like YPZ3_2295 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPZ3_2295 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPZ3_2295 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily YPZ3_2295 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YPZ3_2295 IPR015956 Penicillin-binding protein, C-terminal domain superfamily YPZ3_2296 IPR012997 Rare lipoprotein A YPZ3_2296 IPR036908 RlpA-like domain superfamily YPZ3_2296 IPR009009 RlpA-like protein, double-psi beta-barrel domain YPZ3_2296 IPR034718 Endolytic peptidoglycan transglycosylase RlpA YPZ3_2296 IPR036680 Sporulation-like domain superfamily YPZ3_2296 IPR007730 Sporulation-like domain YPZ3_2297 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA YPZ3_2297 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB YPZ3_2297 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site YPZ3_2298 IPR017790 Penicillin-binding protein 2 YPZ3_2298 IPR001460 Penicillin-binding protein, transpeptidase YPZ3_2298 IPR036138 Penicillin-binding protein, dimerisation domain superfamily YPZ3_2298 IPR005311 Penicillin-binding protein, dimerisation domain YPZ3_2298 IPR012338 Beta-lactamase/transpeptidase-like YPZ3_2299 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPZ3_2299 IPR003742 RNA methyltransferase RlmH YPZ3_2299 IPR029028 Alpha/beta knot methyltransferases YPZ3_2300 IPR004394 Protein Iojap/ribosomal silencing factor RsfS YPZ3_2301 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2301 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase YPZ3_2301 IPR004821 Cytidyltransferase-like domain YPZ3_2302 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPZ3_2302 IPR032780 DNA polymerase III subunit delta, C-terminal YPZ3_2302 IPR010372 DNA polymerase III delta, N-terminal YPZ3_2302 IPR005790 DNA polymerase III, delta subunit YPZ3_2302 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2303 IPR007485 LPS-assembly lipoprotein LptE YPZ3_2304 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPZ3_2304 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPZ3_2304 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2304 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPZ3_2304 IPR025709 Leucyl-tRNA synthetase, editing domain YPZ3_2304 IPR002302 Leucine-tRNA ligase YPZ3_2304 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPZ3_2304 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPZ3_2305 IPR009912 Zinc-ribbon containing domain YPZ3_2306 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2306 IPR017871 ABC transporter, conserved site YPZ3_2306 IPR003439 ABC transporter-like YPZ3_2306 IPR003593 AAA+ ATPase domain YPZ3_2306 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPZ3_2307 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM YPZ3_2307 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPZ3_2307 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2307 IPR035906 MetI-like superfamily YPZ3_2308 IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ YPZ3_2308 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPZ3_2308 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2308 IPR035906 MetI-like superfamily YPZ3_2309 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPZ3_2310 IPR003010 Carbon-nitrogen hydrolase YPZ3_2310 IPR004563 Apolipoprotein N-acyltransferase YPZ3_2310 IPR036526 Carbon-nitrogen hydrolase superfamily YPZ3_2311 IPR016169 FAD-binding, type PCMH, subdomain 2 YPZ3_2311 IPR005170 Transporter-associated domain YPZ3_2311 IPR036318 FAD-binding, type PCMH-like superfamily YPZ3_2311 IPR000644 CBS domain YPZ3_2312 IPR023091 Metalloprotease catalytic domain superfamily, predicted YPZ3_2312 IPR002036 Endoribonuclease YbeY YPZ3_2312 IPR020549 Endoribonuclease YbeY, conserved site YPZ3_2313 IPR003714 PhoH-like protein YPZ3_2313 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2314 IPR023404 Radical SAM, alpha/beta horseshoe YPZ3_2314 IPR007197 Radical SAM YPZ3_2314 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB YPZ3_2314 IPR038135 Methylthiotransferase, N-terminal domain superfamily YPZ3_2314 IPR002792 TRAM domain YPZ3_2314 IPR013848 Methylthiotransferase, N-terminal YPZ3_2314 IPR020612 Methylthiotransferase, conserved site YPZ3_2314 IPR006638 Elp3/MiaB/NifB YPZ3_2314 IPR005839 Methylthiotransferase YPZ3_2315 IPR002938 FAD-binding domain YPZ3_2315 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 YPZ3_2315 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_2315 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YPZ3_2316 IPR006426 Asparagine synthase, glutamine-hydrolyzing YPZ3_2316 IPR017932 Glutamine amidotransferase type 2 domain YPZ3_2316 IPR029055 Nucleophile aminohydrolases, N-terminal YPZ3_2316 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2316 IPR033738 Asparagine synthase, N-terminal domain YPZ3_2316 IPR001962 Asparagine synthase YPZ3_2317 IPR036412 HAD-like superfamily YPZ3_2317 IPR006357 HAD-superfamily hydrolase, subfamily IIA YPZ3_2317 IPR023214 HAD superfamily YPZ3_2318 IPR000835 MarR-type HTH domain YPZ3_2318 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_2318 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2318 IPR000600 ROK family YPZ3_2319 IPR006680 Amidohydrolase-related YPZ3_2319 IPR032466 Metal-dependent hydrolase YPZ3_2319 IPR003764 N-acetylglucosamine-6-phosphate deacetylase YPZ3_2319 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPZ3_2320 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase YPZ3_2320 IPR037171 NagB/RpiA transferase-like YPZ3_2320 IPR018321 Glucosamine-6-phosphate isomerase, conserved site YPZ3_2320 IPR004547 Glucosamine-6-phosphate isomerase YPZ3_2321 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component YPZ3_2321 IPR013013 Phosphotransferase system, EIIC component, type 1 YPZ3_2321 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 YPZ3_2321 IPR036878 Glucose permease domain IIB YPZ3_2321 IPR011055 Duplicated hybrid motif YPZ3_2321 IPR001996 Phosphotransferase system, IIB component, type 1 YPZ3_2321 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPZ3_2321 IPR003352 Phosphotransferase system, EIIC YPZ3_2322 IPR002686 Transposase IS200-like YPZ3_2322 IPR036515 Transposase IS200-like superfamily YPZ3_2323 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPZ3_2323 IPR004514 Glutamine-tRNA synthetase YPZ3_2323 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPZ3_2323 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily YPZ3_2323 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain YPZ3_2323 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPZ3_2323 IPR022861 Glutamine-tRNA ligase, bacterial YPZ3_2323 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal YPZ3_2323 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily YPZ3_2323 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2324 IPR005318 Outer membrane porin, bacterial YPZ3_2324 IPR023614 Porin domain superfamily YPZ3_2325 IPR014756 Immunoglobulin E-set YPZ3_2325 IPR012291 CBM2, carbohydrate-binding domain superfamily YPZ3_2325 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal YPZ3_2325 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily YPZ3_2325 IPR025705 Beta-hexosaminidase YPZ3_2325 IPR029018 Beta-hexosaminidase-like, domain 2 YPZ3_2325 IPR017853 Glycoside hydrolase superfamily YPZ3_2325 IPR015883 Glycoside hydrolase family 20, catalytic domain YPZ3_2325 IPR004867 Chitobiase C-terminal domain YPZ3_2325 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain YPZ3_2325 IPR013783 Immunoglobulin-like fold YPZ3_2326 IPR015883 Glycoside hydrolase family 20, catalytic domain YPZ3_2326 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal YPZ3_2326 IPR013783 Immunoglobulin-like fold YPZ3_2326 IPR014756 Immunoglobulin E-set YPZ3_2326 IPR017853 Glycoside hydrolase superfamily YPZ3_2326 IPR004867 Chitobiase C-terminal domain YPZ3_2326 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain YPZ3_2326 IPR012291 CBM2, carbohydrate-binding domain superfamily YPZ3_2326 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily YPZ3_2326 IPR025705 Beta-hexosaminidase YPZ3_2326 IPR029018 Beta-hexosaminidase-like, domain 2 YPZ3_2327 IPR002481 Ferric-uptake regulator YPZ3_2327 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_2327 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2328 IPR029039 Flavoprotein-like superfamily YPZ3_2328 IPR010086 Flavodoxin, long chain YPZ3_2328 IPR008254 Flavodoxin/nitric oxide synthase YPZ3_2328 IPR001226 Flavodoxin, conserved site YPZ3_2329 IPR029058 Alpha/Beta hydrolase fold YPZ3_2329 IPR000073 Alpha/beta hydrolase fold-1 YPZ3_2330 IPR010998 Integrase/recombinase, N-terminal YPZ3_2330 IPR038488 Integrase, DNA-binding domain superfamily YPZ3_2330 IPR002104 Integrase, catalytic domain YPZ3_2330 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPZ3_2330 IPR013762 Integrase-like, catalytic domain superfamily YPZ3_2330 IPR025166 Integrase, DNA-binding domain YPZ3_2331 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2331 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_2331 IPR002611 IstB-like ATP-binding protein YPZ3_2331 IPR003593 AAA+ ATPase domain YPZ3_2331 IPR001270 ClpA/B family YPZ3_2332 IPR001584 Integrase, catalytic core YPZ3_2332 IPR017894 HTH domain, IS21 transposase-type YPZ3_2332 IPR006120 Resolvase, HTH domain YPZ3_2332 IPR012337 Ribonuclease H-like superfamily YPZ3_2332 IPR036397 Ribonuclease H superfamily YPZ3_2334 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPZ3_2335 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2335 IPR035906 MetI-like superfamily YPZ3_2336 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2336 IPR003593 AAA+ ATPase domain YPZ3_2336 IPR003439 ABC transporter-like YPZ3_2336 IPR017871 ABC transporter, conserved site YPZ3_2336 IPR005892 Glycine betaine transport ATP-binding subunit YPZ3_2336 IPR000644 CBS domain YPZ3_2337 IPR000358 Ribonucleotide reductase small subunit family YPZ3_2337 IPR009078 Ferritin-like superfamily YPZ3_2337 IPR012348 Ribonucleotide reductase-like YPZ3_2337 IPR033909 Ribonucleotide reductase small subunit YPZ3_2337 IPR026494 Ribonucleoside reductase subunit beta, NrdF YPZ3_2337 IPR030475 Ribonucleotide reductase small subunit, acitve site YPZ3_2338 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YPZ3_2338 IPR013554 Ribonucleotide reductase N-terminal YPZ3_2338 IPR013509 Ribonucleotide reductase large subunit, N-terminal YPZ3_2338 IPR000788 Ribonucleotide reductase large subunit, C-terminal YPZ3_2338 IPR013346 Ribonucleotide reductase, class I , alpha subunit YPZ3_2338 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE YPZ3_2338 IPR039718 Ribonucleoside-diphosphate reductase large subunit YPZ3_2339 IPR004465 Ribonucleotide reductase Class Ib, NrdI YPZ3_2339 IPR029039 Flavoprotein-like superfamily YPZ3_2339 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial YPZ3_2340 IPR009435 Acid shock YPZ3_2340 IPR023497 Acid shock protein YPZ3_2341 IPR018994 Protein of unknown function DUF2002 YPZ3_2342 IPR009587 Protein of unknown function DUF1198 YPZ3_2344 IPR011980 Nickel ABC transporter, substrate-binding protein NikA YPZ3_2344 IPR023765 Solute-binding protein family 5, conserved site YPZ3_2344 IPR039424 Solute-binding protein family 5 YPZ3_2344 IPR000914 Solute-binding protein family 5 domain YPZ3_2344 IPR030678 Peptide/nickel binding protein, MppA-type YPZ3_2345 IPR035906 MetI-like superfamily YPZ3_2345 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2346 IPR035906 MetI-like superfamily YPZ3_2346 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2346 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPZ3_2347 IPR015863 ABC transporter, hemin import, HmuV YPZ3_2347 IPR003439 ABC transporter-like YPZ3_2347 IPR003593 AAA+ ATPase domain YPZ3_2347 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2347 IPR017871 ABC transporter, conserved site YPZ3_2348 IPR014137 Nickel import ATP-binding protein NikE YPZ3_2348 IPR015858 ABC transporter, nickel import, NikE YPZ3_2348 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2348 IPR017871 ABC transporter, conserved site YPZ3_2348 IPR003439 ABC transporter-like YPZ3_2348 IPR003593 AAA+ ATPase domain YPZ3_2349 IPR036463 Urease, gamma subunit superfamily YPZ3_2349 IPR002026 Urease, gamma/gamma-beta subunit YPZ3_2349 IPR012010 Urease, gamma subunit YPZ3_2350 IPR002019 Urease, beta subunit YPZ3_2350 IPR036461 Urease, beta subunit superfamily YPZ3_2351 IPR029754 Urease nickel binding site YPZ3_2351 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPZ3_2351 IPR005848 Urease, alpha subunit YPZ3_2351 IPR032466 Metal-dependent hydrolase YPZ3_2351 IPR011612 Urease alpha-subunit, N-terminal domain YPZ3_2351 IPR006680 Amidohydrolase-related YPZ3_2351 IPR017951 Urease alpha subunit, C-terminal YPZ3_2351 IPR017950 Urease active site YPZ3_2352 IPR012406 Urease accessory protein UreE YPZ3_2352 IPR007864 Urease accessory protein UreE, C-terminal domain YPZ3_2352 IPR004029 UreE urease accessory, N-terminal YPZ3_2352 IPR036118 UreE urease accessory, N-terminal domain superfamily YPZ3_2353 IPR002639 Urease accessory protein UreF YPZ3_2353 IPR038277 UreF domain superfamily YPZ3_2354 IPR004400 Urease accessory protein UreG YPZ3_2354 IPR003495 CobW/HypB/UreG, nucleotide-binding domain YPZ3_2354 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2355 IPR002669 Urease accessory protein UreD YPZ3_2356 IPR029020 Ammonium/urea transporter YPZ3_2356 IPR004937 Urea transporter YPZ3_2357 IPR004688 Transition metal uptake transporter nickel/cobalt YPZ3_2357 IPR011541 Nickel/cobalt transporter, high-affinity YPZ3_2358 IPR038303 HNS-dependent expression A/B superfamily YPZ3_2358 IPR010486 HNS-dependent expression A/B YPZ3_2358 IPR028623 HNS-dependent expression B YPZ3_2359 IPR013099 Potassium channel domain YPZ3_2359 IPR036291 NAD(P)-binding domain superfamily YPZ3_2359 IPR003148 Regulator of K+ conductance, N-terminal YPZ3_2360 IPR003691 Putative fluoride ion transporter CrcB YPZ3_2361 IPR003691 Putative fluoride ion transporter CrcB YPZ3_2362 IPR036095 PTS system IIB component-like superfamily YPZ3_2362 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPZ3_2362 IPR013012 Phosphotransferase system, EIIB component, type 3 YPZ3_2363 IPR003352 Phosphotransferase system, EIIC YPZ3_2363 IPR004796 Phosphotransferase system, cellobiose-type IIC component YPZ3_2363 IPR004501 Phosphotransferase system, EIIC component, type 3 YPZ3_2364 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily YPZ3_2364 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit YPZ3_2365 IPR013096 Cupin 2, conserved barrel YPZ3_2365 IPR018062 HTH domain AraC-type, conserved site YPZ3_2365 IPR014710 RmlC-like jelly roll fold YPZ3_2365 IPR018060 DNA binding HTH domain, AraC-type YPZ3_2365 IPR009057 Homeobox-like domain superfamily YPZ3_2365 IPR020449 Transcription regulator HTH, AraC- type YPZ3_2365 IPR011051 RmlC-like cupin domain superfamily YPZ3_2366 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPZ3_2366 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria YPZ3_2366 IPR006879 Carbohydrate deacetylase YdjC-like YPZ3_2367 IPR010985 Ribbon-helix-helix YPZ3_2367 IPR013321 Arc-type ribbon-helix-helix YPZ3_2367 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily YPZ3_2367 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal YPZ3_2367 IPR005621 Negative modulator of initiation of replication SeqA YPZ3_2367 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain YPZ3_2368 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPZ3_2368 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPZ3_2368 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPZ3_2368 IPR005852 Phosphoglucomutase, alpha-D-glucose specific YPZ3_2368 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPZ3_2368 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YPZ3_2368 IPR016066 Alpha-D-phosphohexomutase, conserved site YPZ3_2368 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPZ3_2370 IPR011006 CheY-like superfamily YPZ3_2370 IPR001867 OmpR/PhoB-type DNA-binding domain YPZ3_2370 IPR001789 Signal transduction response regulator, receiver domain YPZ3_2370 IPR039420 Transcriptional regulatory protein WalR-like YPZ3_2370 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2371 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_2371 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_2371 IPR029016 GAF-like domain superfamily YPZ3_2371 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal YPZ3_2371 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_2371 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_2371 IPR003018 GAF domain YPZ3_2371 IPR025201 Sensor protein KdpD, transmembrane domain YPZ3_2371 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_2371 IPR038318 KdpD, transmembrane domain superfamily YPZ3_2371 IPR005467 Histidine kinase domain YPZ3_2372 IPR003820 Potassium-transporting ATPase C chain YPZ3_2373 IPR023299 P-type ATPase, cytoplasmic domain N YPZ3_2373 IPR006391 P-type ATPase, B chain, subfamily IA YPZ3_2373 IPR036412 HAD-like superfamily YPZ3_2373 IPR008250 P-type ATPase, A domain superfamily YPZ3_2373 IPR023298 P-type ATPase, transmembrane domain superfamily YPZ3_2373 IPR018303 P-type ATPase, phosphorylation site YPZ3_2373 IPR001757 P-type ATPase YPZ3_2374 IPR004623 Potassium-transporting ATPase A chain YPZ3_2375 IPR013560 Domain of unknown function DUF1722 YPZ3_2376 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain YPZ3_2376 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily YPZ3_2376 IPR006050 DNA photolyase, N-terminal YPZ3_2376 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal YPZ3_2376 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily YPZ3_2376 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2376 IPR002081 Cryptochrome/DNA photolyase class 1 YPZ3_2377 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPZ3_2377 IPR000396 Cyclic-AMP phosphodiesterase, class-II YPZ3_2377 IPR024225 Cyclic-AMP phosphodiesterase class-II, conserved site YPZ3_2378 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 YPZ3_2378 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily YPZ3_2379 IPR003833 Carboxyltransferase domain, subdomain C and D YPZ3_2379 IPR029000 Cyclophilin-like domain superfamily YPZ3_2379 IPR010016 KipI family YPZ3_2380 IPR029000 Cyclophilin-like domain superfamily YPZ3_2380 IPR003778 Carboxyltransferase domain, subdomain A and B YPZ3_2381 IPR005501 LamB/YcsF/PxpA-like YPZ3_2381 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPZ3_2384 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like YPZ3_2384 IPR000816 Peptidase C15, pyroglutamyl peptidase I YPZ3_2384 IPR033693 Pyroglutamyl peptidase I, Glu active site YPZ3_2384 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily YPZ3_2384 IPR033694 Pyroglutamyl peptidase I, Cys active site YPZ3_2384 IPR029762 Pyroglutamyl peptidase I, bacterial-type YPZ3_2385 IPR005122 Uracil-DNA glycosylase-like YPZ3_2385 IPR018085 Uracil-DNA glycosylase, active site YPZ3_2385 IPR002043 Uracil-DNA glycosylase family 1 YPZ3_2385 IPR036895 Uracil-DNA glycosylase-like domain superfamily YPZ3_2386 IPR001150 Glycine radical domain YPZ3_2386 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPZ3_2386 IPR011140 Autonomous glycyl radical cofactor GrcA YPZ3_2387 IPR029058 Alpha/Beta hydrolase fold YPZ3_2388 IPR002110 Ankyrin repeat YPZ3_2388 IPR036770 Ankyrin repeat-containing domain superfamily YPZ3_2388 IPR020683 Ankyrin repeat-containing domain YPZ3_2389 IPR011545 DEAD/DEAH box helicase domain YPZ3_2389 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPZ3_2389 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2389 IPR028621 ATP-dependent RNA helicase SrmB YPZ3_2389 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_2389 IPR001650 Helicase, C-terminal YPZ3_2389 IPR014014 RNA helicase, DEAD-box type, Q motif YPZ3_2390 IPR007848 Methyltransferase small domain YPZ3_2390 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase YPZ3_2390 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPZ3_2390 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_2391 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily YPZ3_2391 IPR005288 L-aspartate oxidase YPZ3_2391 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPZ3_2391 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily YPZ3_2391 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_2391 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YPZ3_2392 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site YPZ3_2392 IPR014284 RNA polymerase sigma-70 like domain YPZ3_2392 IPR039425 RNA polymerase sigma-70 like YPZ3_2392 IPR014286 RNA polymerase sigma-70 RpoE type YPZ3_2392 IPR013325 RNA polymerase sigma factor, region 2 YPZ3_2392 IPR013324 RNA polymerase sigma factor, region 3/4-like YPZ3_2392 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 YPZ3_2392 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2392 IPR007627 RNA polymerase sigma-70 region 2 YPZ3_2393 IPR005572 Anti sigma-E protein RseA, N-terminal YPZ3_2393 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily YPZ3_2393 IPR026279 Sigma-E factor negative regulatory protein RseA YPZ3_2393 IPR005573 Anti sigma-E protein RseA, C-terminal YPZ3_2394 IPR038484 MucB/RseB, C-terminal domain superfamily YPZ3_2394 IPR033434 MucB/RseB, N-terminal YPZ3_2394 IPR005588 MucB/RseB YPZ3_2394 IPR033436 MucB/RseB, C-terminal YPZ3_2395 IPR007359 Positive regulator of sigma(E), RseC/MucC YPZ3_2395 IPR026268 Protein RseC YPZ3_2397 IPR005225 Small GTP-binding protein domain YPZ3_2397 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2397 IPR035654 Elongation factor 4, domain IV YPZ3_2397 IPR000795 Transcription factor, GTP-binding domain YPZ3_2397 IPR013842 GTP-binding protein LepA, C-terminal YPZ3_2397 IPR038363 LepA, C-terminal domain superfamily YPZ3_2397 IPR006297 Elongation factor 4 YPZ3_2397 IPR035647 EF-G domain III/V-like YPZ3_2397 IPR031157 Tr-type G domain, conserved site YPZ3_2397 IPR004161 Translation elongation factor EFTu-like, domain 2 YPZ3_2397 IPR000640 Elongation factor EFG, domain V-like YPZ3_2398 IPR019757 Peptidase S26A, signal peptidase I, lysine active site YPZ3_2398 IPR019758 Peptidase S26A, signal peptidase I, conserved site YPZ3_2398 IPR000223 Peptidase S26A, signal peptidase I YPZ3_2398 IPR019533 Peptidase S26 YPZ3_2398 IPR019756 Peptidase S26A, signal peptidase I, serine active site YPZ3_2398 IPR036286 LexA/Signal peptidase-like superfamily YPZ3_2399 IPR014720 Double-stranded RNA-binding domain YPZ3_2399 IPR036389 Ribonuclease III, endonuclease domain superfamily YPZ3_2399 IPR000999 Ribonuclease III domain YPZ3_2399 IPR011907 Ribonuclease III YPZ3_2400 IPR006073 GTP binding domain YPZ3_2400 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2400 IPR009019 K homology domain superfamily, prokaryotic type YPZ3_2400 IPR004044 K Homology domain, type 2 YPZ3_2400 IPR015946 K homology domain-like, alpha/beta YPZ3_2400 IPR005662 GTP-binding protein Era YPZ3_2400 IPR030388 Era-type guanine nucleotide-binding (G) domain YPZ3_2400 IPR005225 Small GTP-binding protein domain YPZ3_2401 IPR003717 Recombination protein O, RecO YPZ3_2401 IPR012340 Nucleic acid-binding, OB-fold YPZ3_2401 IPR022572 DNA replication/recombination mediator RecO, N-terminal YPZ3_2401 IPR037278 ARFGAP/RecO-like zinc finger YPZ3_2402 IPR036397 Ribonuclease H superfamily YPZ3_2402 IPR012337 Ribonuclease H-like superfamily YPZ3_2402 IPR006120 Resolvase, HTH domain YPZ3_2402 IPR001584 Integrase, catalytic core YPZ3_2402 IPR017894 HTH domain, IS21 transposase-type YPZ3_2403 IPR002611 IstB-like ATP-binding protein YPZ3_2403 IPR003593 AAA+ ATPase domain YPZ3_2403 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2403 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_2403 IPR001270 ClpA/B family YPZ3_2404 IPR013785 Aldolase-type TIM barrel YPZ3_2404 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ YPZ3_2404 IPR036130 Pyridoxine 5'-phosphate synthase YPZ3_2405 IPR004568 Phosphopantetheine-protein transferase domain YPZ3_2405 IPR002582 Holo-[acyl carrier protein] synthase YPZ3_2405 IPR037143 4'-phosphopantetheinyl transferase domain superfamily YPZ3_2405 IPR008278 4'-phosphopantetheinyl transferase domain YPZ3_2406 IPR036515 Transposase IS200-like superfamily YPZ3_2406 IPR002686 Transposase IS200-like YPZ3_2407 IPR035472 RpiR-like, SIS domain YPZ3_2407 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2407 IPR009057 Homeobox-like domain superfamily YPZ3_2407 IPR000281 Helix-turn-helix protein RpiR YPZ3_2407 IPR001347 Sugar isomerase (SIS) YPZ3_2408 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ YPZ3_2408 IPR001347 Sugar isomerase (SIS) YPZ3_2408 IPR040190 N-acetylmuramic acid 6-phosphate etherase/glucokinase regulatory protein YPZ3_2408 IPR009060 UBA-like superfamily YPZ3_2408 IPR005486 Glucokinase regulatory protein, conserved site YPZ3_2409 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB YPZ3_2409 IPR036412 HAD-like superfamily YPZ3_2409 IPR023214 HAD superfamily YPZ3_2410 IPR016192 APOBEC/CMP deaminase, zinc-binding YPZ3_2410 IPR002125 Cytidine and deoxycytidylate deaminase domain YPZ3_2410 IPR016193 Cytidine deaminase-like YPZ3_2410 IPR028883 tRNA-specific adenosine deaminase YPZ3_2411 IPR023346 Lysozyme-like domain superfamily YPZ3_2411 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPZ3_2411 IPR000189 Prokaryotic transglycosylase, active site YPZ3_2411 IPR008258 Transglycosylase SLT domain 1 YPZ3_2411 IPR023703 Membrane-bound lytic murein transglycosylase F YPZ3_2412 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain YPZ3_2412 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily YPZ3_2412 IPR010918 PurM-like, C-terminal domain YPZ3_2412 IPR036676 PurM-like, C-terminal domain superfamily YPZ3_2412 IPR036921 PurM-like, N-terminal domain superfamily YPZ3_2412 IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal YPZ3_2412 IPR017926 Glutamine amidotransferase YPZ3_2412 IPR010073 Phosphoribosylformylglycinamidine synthase PurL YPZ3_2412 IPR029062 Class I glutamine amidotransferase-like YPZ3_2416 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_2416 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_2416 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_2416 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_2416 IPR005467 Histidine kinase domain YPZ3_2416 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_2417 IPR025262 Quorum-sensing regulator protein G YPZ3_2418 IPR003593 AAA+ ATPase domain YPZ3_2418 IPR011006 CheY-like superfamily YPZ3_2418 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2418 IPR025944 Sigma-54 interaction domain, conserved site YPZ3_2418 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPZ3_2418 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPZ3_2418 IPR002078 RNA polymerase sigma factor 54 interaction domain YPZ3_2418 IPR001789 Signal transduction response regulator, receiver domain YPZ3_2418 IPR009057 Homeobox-like domain superfamily YPZ3_2419 IPR003694 NAD(+) synthetase YPZ3_2419 IPR014445 Glutamine-dependent NAD(+) synthetase YPZ3_2419 IPR022310 NAD/GMP synthase YPZ3_2419 IPR003010 Carbon-nitrogen hydrolase YPZ3_2419 IPR000132 Nitrilase/cyanide hydratase, conserved site YPZ3_2419 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2419 IPR036526 Carbon-nitrogen hydrolase superfamily YPZ3_2420 IPR002187 Nitrogen regulatory protein PII YPZ3_2420 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPZ3_2420 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPZ3_2420 IPR017918 Nitrogen regulatory protein PII, conserved site YPZ3_2420 IPR002332 Nitrogen regulatory protein P-II, urydylation site YPZ3_2421 IPR032791 Uncharacterised protein YhfZ, C-terminal domain YPZ3_2421 IPR041444 YhfZ, helix-turn-helix domain YPZ3_2422 IPR032791 Uncharacterised protein YhfZ, C-terminal domain YPZ3_2422 IPR041444 YhfZ, helix-turn-helix domain YPZ3_2423 IPR000971 Globin YPZ3_2423 IPR012292 Globin/Protoglobin YPZ3_2423 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPZ3_2423 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPZ3_2423 IPR017927 FAD-binding domain, ferredoxin reductase-type YPZ3_2423 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPZ3_2423 IPR023950 Flavohemoprotein YPZ3_2423 IPR009050 Globin-like superfamily YPZ3_2423 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPZ3_2423 IPR017938 Riboflavin synthase-like beta-barrel YPZ3_2424 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site YPZ3_2424 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_2424 IPR001085 Serine hydroxymethyltransferase YPZ3_2424 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_2424 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_2424 IPR039429 Serine hydroxymethyltransferase-like domain YPZ3_2425 IPR000758 Virulence-related outer membrane protein YPZ3_2425 IPR027385 Outer membrane protein beta-barrel domain YPZ3_2425 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPZ3_2426 IPR026032 Probable 3-phenylpropionic acid transporter YPZ3_2426 IPR036259 MFS transporter superfamily YPZ3_2426 IPR024989 Major facilitator superfamily associated domain YPZ3_2427 IPR011608 PRD domain YPZ3_2427 IPR036634 PRD domain superfamily YPZ3_2428 IPR016537 Uncharacterised conserved protein UCP008159, YPZ3_2428 IPR010412 Protein of unknown function DUF1007 YPZ3_2429 IPR011541 Nickel/cobalt transporter, high-affinity YPZ3_2430 IPR002686 Transposase IS200-like YPZ3_2430 IPR036515 Transposase IS200-like superfamily YPZ3_2431 IPR033942 Inositol monophosphatase YPZ3_2431 IPR020550 Inositol monophosphatase, conserved site YPZ3_2431 IPR022337 Inositol monophosphatase, SuhB YPZ3_2431 IPR000760 Inositol monophosphatase-like YPZ3_2431 IPR020583 Inositol monophosphatase, metal-binding site YPZ3_2432 IPR029028 Alpha/beta knot methyltransferases YPZ3_2432 IPR004384 RNA methyltransferase TrmJ/LasT YPZ3_2432 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPZ3_2432 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPZ3_2433 IPR000944 Transcription regulator Rrf2-type YPZ3_2433 IPR030489 Transcription regulator Rrf2-type, conserved site YPZ3_2433 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2433 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_2433 IPR010242 Transcription factor HTH, IscR YPZ3_2434 IPR000192 Aminotransferase class V domain YPZ3_2434 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPZ3_2434 IPR010240 Cysteine desulfurase IscS YPZ3_2434 IPR016454 Cysteine desulfurase YPZ3_2434 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_2434 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_2434 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_2435 IPR011339 ISC system FeS cluster assembly, IscU scaffold YPZ3_2435 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal YPZ3_2436 IPR036386 HscB, C-terminal domain superfamily YPZ3_2436 IPR004640 Co-chaperone Hsc20 YPZ3_2436 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain YPZ3_2436 IPR036869 Chaperone J-domain superfamily YPZ3_2436 IPR001623 DnaJ domain YPZ3_2437 IPR018181 Heat shock protein 70, conserved site YPZ3_2437 IPR042039 HscA chaperone, nucleotide-binding domain YPZ3_2437 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily YPZ3_2437 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily YPZ3_2437 IPR013126 Heat shock protein 70 family YPZ3_2437 IPR010236 ISC system FeS cluster assembly, HscA chaperone YPZ3_2438 IPR036010 2Fe-2S ferredoxin-like superfamily YPZ3_2438 IPR018298 Adrenodoxin, iron-sulphur binding site YPZ3_2438 IPR012675 Beta-grasp domain superfamily YPZ3_2438 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria YPZ3_2438 IPR001055 Adrenodoxin YPZ3_2438 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPZ3_2439 IPR001346 Interferon regulatory factor DNA-binding domain YPZ3_2439 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B YPZ3_2439 IPR008330 Peptidase M17, peptidase B YPZ3_2439 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal YPZ3_2440 IPR009839 SseB protein N-terminal domain YPZ3_2440 IPR027945 SseB protein, C-terminal YPZ3_2442 IPR011050 Pectin lyase fold/virulence factor YPZ3_2442 IPR004899 Pertactin, central region YPZ3_2442 IPR030930 Adhesin of bacterial autotransporter system YPZ3_2442 IPR005546 Autotransporter beta-domain YPZ3_2442 IPR036709 Autotransporter beta-domain superfamily YPZ3_2442 IPR006315 Outer membrane autotransporter barrel YPZ3_2442 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPZ3_2442 IPR003991 Pertactin virulence factor family YPZ3_2443 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPZ3_2443 IPR030930 Adhesin of bacterial autotransporter system YPZ3_2443 IPR005546 Autotransporter beta-domain YPZ3_2443 IPR003991 Pertactin virulence factor family YPZ3_2443 IPR006315 Outer membrane autotransporter barrel YPZ3_2443 IPR004899 Pertactin, central region YPZ3_2443 IPR011050 Pectin lyase fold/virulence factor YPZ3_2443 IPR036709 Autotransporter beta-domain superfamily YPZ3_2445 IPR023005 Nucleoside diphosphate kinase, active site YPZ3_2445 IPR001564 Nucleoside diphosphate kinase YPZ3_2445 IPR036850 Nucleoside diphosphate kinase-like domain superfamily YPZ3_2445 IPR034907 Nucleoside diphosphate kinase-like domain YPZ3_2446 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr YPZ3_2446 IPR027492 Dual-specificity RNA methyltransferase RlmN YPZ3_2446 IPR040072 Methyltransferase (Class A) YPZ3_2446 IPR013785 Aldolase-type TIM barrel YPZ3_2446 IPR007197 Radical SAM YPZ3_2448 IPR001387 Cro/C1-type helix-turn-helix domain YPZ3_2448 IPR025194 Domain of unknown function DUF4115 YPZ3_2448 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_2448 IPR023690 Cytoskeleton protein RodZ YPZ3_2449 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial YPZ3_2449 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YPZ3_2449 IPR011005 Dihydropteroate synthase-like YPZ3_2449 IPR036849 Enolase-like, C-terminal domain superfamily YPZ3_2450 IPR033656 Histidyl-anticodon-binding YPZ3_2450 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit YPZ3_2450 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain YPZ3_2450 IPR036621 Anticodon-binding domain superfamily YPZ3_2450 IPR004154 Anticodon-binding YPZ3_2450 IPR015807 Histidine-tRNA ligase YPZ3_2450 IPR006195 Aminoacyl-tRNA synthetase, class II YPZ3_2451 IPR018704 Tetratricopeptide repeat-like domain YPZ3_2451 IPR011990 Tetratricopeptide-like helical domain superfamily YPZ3_2451 IPR026039 Uncharacterised protein family UPF0070 YPZ3_2452 IPR015943 WD40/YVTN repeat-like-containing domain superfamily YPZ3_2452 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily YPZ3_2452 IPR002372 Pyrrolo-quinoline quinone repeat YPZ3_2452 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YPZ3_2452 IPR017687 Outer membrane protein assembly factor BamB YPZ3_2453 IPR031166 EngA-type guanine nucleotide-binding (G) domain YPZ3_2453 IPR016484 GTP-binding protein EngA YPZ3_2453 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2453 IPR015946 K homology domain-like, alpha/beta YPZ3_2453 IPR032859 GTPase Der, C-terminal KH-domain-like YPZ3_2453 IPR006073 GTP binding domain YPZ3_2453 IPR005225 Small GTP-binding protein domain YPZ3_2455 IPR020579 Exonuclease VII, large subunit, C-terminal YPZ3_2455 IPR025824 OB-fold nucleic acid binding domain YPZ3_2455 IPR003753 Exonuclease VII, large subunit YPZ3_2456 IPR001093 IMP dehydrogenase/GMP reductase YPZ3_2456 IPR005990 Inosine-5'-monophosphate dehydrogenase YPZ3_2456 IPR000644 CBS domain YPZ3_2456 IPR013785 Aldolase-type TIM barrel YPZ3_2456 IPR015875 IMP dehydrogenase / GMP reductase, conserved site YPZ3_2457 IPR001674 GMP synthase, C-terminal YPZ3_2457 IPR004739 GMP synthase, glutamine amidotransferase YPZ3_2457 IPR022955 GMP synthase YPZ3_2457 IPR029062 Class I glutamine amidotransferase-like YPZ3_2457 IPR017926 Glutamine amidotransferase YPZ3_2457 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2457 IPR025777 GMP synthetase ATP pyrophosphatase domain YPZ3_2457 IPR022310 NAD/GMP synthase YPZ3_2458 IPR002686 Transposase IS200-like YPZ3_2458 IPR036515 Transposase IS200-like superfamily YPZ3_2459 IPR008514 Type VI secretion system effector, Hcp YPZ3_2459 IPR036624 Hcp1-like superfamily YPZ3_2463 IPR001207 Transposase, mutator type YPZ3_2465 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase YPZ3_2465 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase YPZ3_2465 IPR029056 Ribokinase-like YPZ3_2467 IPR014453 Inhibitor of vertebrate lysozyme YPZ3_2467 IPR036501 Inhibitor of vertebrate lysozyme superfamily YPZ3_2468 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal YPZ3_2468 IPR022433 Lipid kinase YegS YPZ3_2468 IPR001206 Diacylglycerol kinase, catalytic domain YPZ3_2468 IPR005218 Diacylglycerol/lipid kinase YPZ3_2468 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily YPZ3_2470 IPR010879 Domain of unknown function DUF1508 YPZ3_2470 IPR036913 YegP-like superfamily YPZ3_2471 IPR039420 Transcriptional regulatory protein WalR-like YPZ3_2471 IPR001867 OmpR/PhoB-type DNA-binding domain YPZ3_2471 IPR011006 CheY-like superfamily YPZ3_2471 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_2471 IPR001789 Signal transduction response regulator, receiver domain YPZ3_2471 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2472 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_2472 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_2472 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_2472 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_2472 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_2472 IPR003660 HAMP domain YPZ3_2472 IPR005467 Histidine kinase domain YPZ3_2473 IPR036259 MFS transporter superfamily YPZ3_2473 IPR023721 Multidrug resistance protein MdtD YPZ3_2473 IPR004638 Drug resistance transporter EmrB-like YPZ3_2473 IPR020846 Major facilitator superfamily domain YPZ3_2473 IPR011701 Major facilitator superfamily YPZ3_2474 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPZ3_2474 IPR023931 Multidrug resistance protein MdtC YPZ3_2474 IPR001036 Acriflavin resistance protein YPZ3_2475 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPZ3_2475 IPR022831 Multidrug resistance protein MdtB YPZ3_2475 IPR001036 Acriflavin resistance protein YPZ3_2476 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPZ3_2476 IPR006143 RND efflux pump, membrane fusion protein YPZ3_2476 IPR022824 Multidrug resistance protein MdtA YPZ3_2477 IPR013611 Transport-associated OB, type 2 YPZ3_2477 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPZ3_2477 IPR003593 AAA+ ATPase domain YPZ3_2477 IPR003439 ABC transporter-like YPZ3_2477 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YPZ3_2477 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2477 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_2477 IPR017871 ABC transporter, conserved site YPZ3_2478 IPR004839 Aminotransferase, class I/classII YPZ3_2478 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_2478 IPR000524 Transcription regulator HTH, GntR YPZ3_2478 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_2478 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2478 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_2479 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_2479 IPR005814 Aminotransferase class-III YPZ3_2479 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_2479 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_2479 IPR004632 4-aminobutyrate aminotransferase, bacterial YPZ3_2481 IPR035906 MetI-like superfamily YPZ3_2481 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2482 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2482 IPR035906 MetI-like superfamily YPZ3_2483 IPR042054 YegD-like YPZ3_2483 IPR013126 Heat shock protein 70 family YPZ3_2483 IPR018181 Heat shock protein 70, conserved site YPZ3_2484 IPR006669 Magnesium transporter MgtE YPZ3_2484 IPR038076 MgtE, N-terminal domain superfamily YPZ3_2484 IPR000644 CBS domain YPZ3_2484 IPR038048 Magnesium transporter MgtE, transmembrane domain YPZ3_2484 IPR006668 Magnesium transporter, MgtE intracellular domain YPZ3_2484 IPR006667 SLC41 divalent cation transporters, integral membrane domain YPZ3_2484 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily YPZ3_2485 IPR022371 Exopolyphosphatase YPZ3_2485 IPR030673 Pyrophosphatase, GppA/Ppx-type YPZ3_2485 IPR003695 Ppx/GppA phosphatase YPZ3_2486 IPR025198 Polyphosphate kinase N-terminal domain YPZ3_2486 IPR036832 Polyphosphate kinase N-terminal domain superfamily YPZ3_2486 IPR025200 Polyphosphate kinase C-terminal domain 2 YPZ3_2486 IPR036830 Polyphosphate kinase middle domain superfamily YPZ3_2486 IPR024953 Polyphosphate kinase middle domain YPZ3_2486 IPR001736 Phospholipase D/Transphosphatidylase YPZ3_2486 IPR041108 Polyphosphate kinase, C-terminal domain 1 YPZ3_2486 IPR003414 Polyphosphate kinase YPZ3_2487 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2487 IPR035906 MetI-like superfamily YPZ3_2487 IPR011864 Phosphate ABC transporter, permease protein PstC YPZ3_2488 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2488 IPR035906 MetI-like superfamily YPZ3_2488 IPR005672 Phosphate transport system permease protein PstA YPZ3_2489 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2489 IPR003439 ABC transporter-like YPZ3_2489 IPR003593 AAA+ ATPase domain YPZ3_2489 IPR015850 ABC transporter, phosphate import, PstB YPZ3_2489 IPR005670 Phosphate transport system permease protein 1 YPZ3_2489 IPR017871 ABC transporter, conserved site YPZ3_2492 IPR000182 GNAT domain YPZ3_2492 IPR016181 Acyl-CoA N-acyltransferase YPZ3_2493 IPR001555 Phosphoribosylglycinamide formyltransferase, active site YPZ3_2493 IPR002376 Formyl transferase, N-terminal YPZ3_2493 IPR036477 Formyl transferase, N-terminal domain superfamily YPZ3_2493 IPR004607 Phosphoribosylglycinamide formyltransferase YPZ3_2494 IPR036921 PurM-like, N-terminal domain superfamily YPZ3_2494 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase YPZ3_2494 IPR010918 PurM-like, C-terminal domain YPZ3_2494 IPR016188 PurM-like, N-terminal domain YPZ3_2494 IPR036676 PurM-like, C-terminal domain superfamily YPZ3_2495 IPR000836 Phosphoribosyltransferase domain YPZ3_2495 IPR029057 Phosphoribosyltransferase-like YPZ3_2495 IPR034332 Uracil phosphoribosyltransferase, bacterial-type YPZ3_2495 IPR005765 Uracil phosphoribosyl transferase YPZ3_2496 IPR036515 Transposase IS200-like superfamily YPZ3_2496 IPR002686 Transposase IS200-like YPZ3_2497 IPR036291 NAD(P)-binding domain superfamily YPZ3_2497 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase YPZ3_2497 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPZ3_2497 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPZ3_2497 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site YPZ3_2499 IPR000462 CDP-alcohol phosphatidyltransferase YPZ3_2500 IPR000374 Phosphatidate cytidylyltransferase YPZ3_2501 IPR016676 Phospholipid/glycerol acyltransferase, predicted YPZ3_2501 IPR002123 Phospholipid/glycerol acyltransferase YPZ3_2502 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_2502 IPR022744 Methyltransferase domain, putative YPZ3_2502 IPR022742 Serine aminopeptidase, S33 YPZ3_2502 IPR029058 Alpha/Beta hydrolase fold YPZ3_2503 IPR000340 Dual specificity phosphatase, catalytic domain YPZ3_2503 IPR020422 Dual specificity protein phosphatase domain YPZ3_2503 IPR000387 Tyrosine specific protein phosphatases domain YPZ3_2503 IPR003595 Protein-tyrosine phosphatase, catalytic YPZ3_2503 IPR016130 Protein-tyrosine phosphatase, active site YPZ3_2503 IPR029021 Protein-tyrosine phosphatase-like YPZ3_2506 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2506 IPR002611 IstB-like ATP-binding protein YPZ3_2506 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_2506 IPR003593 AAA+ ATPase domain YPZ3_2506 IPR001270 ClpA/B family YPZ3_2507 IPR036397 Ribonuclease H superfamily YPZ3_2507 IPR001584 Integrase, catalytic core YPZ3_2507 IPR017894 HTH domain, IS21 transposase-type YPZ3_2507 IPR012337 Ribonuclease H-like superfamily YPZ3_2507 IPR006120 Resolvase, HTH domain YPZ3_2508 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_2508 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2508 IPR000847 Transcription regulator HTH, LysR YPZ3_2508 IPR005119 LysR, substrate-binding YPZ3_2509 IPR023210 NADP-dependent oxidoreductase domain YPZ3_2509 IPR036812 NADP-dependent oxidoreductase domain superfamily YPZ3_2509 IPR020471 Aldo/keto reductase YPZ3_2510 IPR036812 NADP-dependent oxidoreductase domain superfamily YPZ3_2510 IPR023210 NADP-dependent oxidoreductase domain YPZ3_2510 IPR020471 Aldo/keto reductase YPZ3_2510 IPR018170 Aldo/keto reductase, conserved site YPZ3_2515 IPR001207 Transposase, mutator type YPZ3_2516 IPR039994 JmjC domain-containing YPZ3_2516 IPR003347 JmjC domain YPZ3_2518 IPR003991 Pertactin virulence factor family YPZ3_2518 IPR030930 Adhesin of bacterial autotransporter system YPZ3_2518 IPR005546 Autotransporter beta-domain YPZ3_2518 IPR036709 Autotransporter beta-domain superfamily YPZ3_2518 IPR011050 Pectin lyase fold/virulence factor YPZ3_2518 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPZ3_2518 IPR004899 Pertactin, central region YPZ3_2518 IPR006315 Outer membrane autotransporter barrel YPZ3_2518 IPR024973 ESPR domain YPZ3_2519 IPR036624 Hcp1-like superfamily YPZ3_2519 IPR008514 Type VI secretion system effector, Hcp YPZ3_2521 IPR023346 Lysozyme-like domain superfamily YPZ3_2521 IPR011815 Penicillin-binding protein 1C YPZ3_2521 IPR009647 Penicillin-binding, C-terminal YPZ3_2521 IPR036950 Penicillin binding protein transglycosylase domain YPZ3_2521 IPR001460 Penicillin-binding protein, transpeptidase YPZ3_2521 IPR012338 Beta-lactamase/transpeptidase-like YPZ3_2521 IPR001264 Glycosyl transferase, family 51 YPZ3_2522 IPR001207 Transposase, mutator type YPZ3_2524 IPR024195 NUDIX hydrolase, YfcD, predicted YPZ3_2524 IPR015797 NUDIX hydrolase-like domain superfamily YPZ3_2524 IPR000086 NUDIX hydrolase domain YPZ3_2525 IPR029052 Metallo-dependent phosphatase-like YPZ3_2525 IPR024654 Calcineurin-like phosphoesterase domain, lpxH-type YPZ3_2525 IPR000979 Phosphodiesterase MJ0936/Vps29 YPZ3_2525 IPR020935 Phosphodiesterase YfcE, conserved site YPZ3_2525 IPR041802 YfcE-like, metallophosphatase domain YPZ3_2527 IPR001509 NAD-dependent epimerase/dehydratase YPZ3_2527 IPR013549 Domain of unknown function DUF1731 YPZ3_2527 IPR010099 Epimerase family protein SDR39U1 YPZ3_2527 IPR036291 NAD(P)-binding domain superfamily YPZ3_2528 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2528 IPR003593 AAA+ ATPase domain YPZ3_2528 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPZ3_2528 IPR017871 ABC transporter, conserved site YPZ3_2528 IPR003439 ABC transporter-like YPZ3_2529 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2529 IPR035906 MetI-like superfamily YPZ3_2529 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPZ3_2530 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPZ3_2530 IPR030199 Histidine transport system permease protein HisQ YPZ3_2530 IPR035906 MetI-like superfamily YPZ3_2530 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2531 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPZ3_2531 IPR018313 Solute-binding protein family 3, conserved site YPZ3_2531 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPZ3_2532 IPR004507 Flavin prenyltransferase UbiX-like YPZ3_2532 IPR036551 Flavin prenyltransferase-like YPZ3_2532 IPR003382 Flavoprotein YPZ3_2533 IPR005854 Amidophosphoribosyltransferase YPZ3_2533 IPR029057 Phosphoribosyltransferase-like YPZ3_2533 IPR000836 Phosphoribosyltransferase domain YPZ3_2533 IPR029055 Nucleophile aminohydrolases, N-terminal YPZ3_2533 IPR035584 Amidophosphoribosyltransferase, N-terminal YPZ3_2533 IPR017932 Glutamine amidotransferase type 2 domain YPZ3_2534 IPR003825 Colicin V production, CvpA YPZ3_2535 IPR036680 Sporulation-like domain superfamily YPZ3_2535 IPR007730 Sporulation-like domain YPZ3_2535 IPR032898 Cell division protein DedD YPZ3_2536 IPR036565 Mur-like, catalytic domain superfamily YPZ3_2536 IPR036615 Mur ligase, C-terminal domain superfamily YPZ3_2536 IPR018109 Folylpolyglutamate synthetase, conserved site YPZ3_2536 IPR001645 Folylpolyglutamate synthetase YPZ3_2536 IPR004101 Mur ligase, C-terminal YPZ3_2536 IPR013221 Mur ligase, central YPZ3_2537 IPR034733 Acetyl-CoA carboxylase YPZ3_2537 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit YPZ3_2537 IPR029045 ClpP/crotonase-like domain superfamily YPZ3_2537 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal YPZ3_2537 IPR041010 Acetyl-coA carboxylase zinc finger domain YPZ3_2538 IPR032818 DedA family YPZ3_2538 IPR032816 SNARE associated Golgi protein YPZ3_2539 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPZ3_2539 IPR020095 Pseudouridine synthase I, TruA, C-terminal YPZ3_2539 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain YPZ3_2539 IPR001406 Pseudouridine synthase I, TruA YPZ3_2540 IPR036291 NAD(P)-binding domain superfamily YPZ3_2540 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPZ3_2540 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPZ3_2541 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPZ3_2541 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPZ3_2541 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPZ3_2541 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_2541 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain YPZ3_2541 IPR036291 NAD(P)-binding domain superfamily YPZ3_2541 IPR038251 PdxB, dimerisation domain superfamily YPZ3_2541 IPR020921 Erythronate-4-phosphate dehydrogenase YPZ3_2543 IPR000620 EamA domain YPZ3_2544 IPR023597 Flagellar regulator Flk YPZ3_2545 IPR008966 Adhesion domain superfamily YPZ3_2545 IPR036937 Fimbrial-type adhesion domain superfamily YPZ3_2545 IPR000259 Fimbrial-type adhesion domain YPZ3_2546 IPR001920 Asp/Glu racemase YPZ3_2546 IPR018187 Asp/Glu racemase, active site 1 YPZ3_2546 IPR015942 Asp/Glu/hydantoin racemase YPZ3_2546 IPR033134 Asp/Glu racemase, active site 2 YPZ3_2546 IPR004380 Aspartate racemase YPZ3_2547 IPR000794 Beta-ketoacyl synthase YPZ3_2547 IPR018201 Beta-ketoacyl synthase, active site YPZ3_2547 IPR014031 Beta-ketoacyl synthase, C-terminal YPZ3_2547 IPR014030 Beta-ketoacyl synthase, N-terminal YPZ3_2547 IPR016039 Thiolase-like YPZ3_2547 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPZ3_2548 IPR006076 FAD dependent oxidoreductase YPZ3_2548 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_2548 IPR008471 MnmC-like methyltransferase YPZ3_2548 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_2548 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC YPZ3_2548 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal YPZ3_2549 IPR007411 Elongation factor P hydroxylase YPZ3_2550 IPR002781 Transmembrane protein TauE-like YPZ3_2551 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily YPZ3_2551 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase YPZ3_2552 IPR020541 Chorismate synthase, conserved site YPZ3_2552 IPR035904 Chorismate synthase AroC superfamily YPZ3_2552 IPR000453 Chorismate synthase YPZ3_2553 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_2553 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase YPZ3_2553 IPR004556 Methyltransferase HemK-like YPZ3_2553 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPZ3_2553 IPR007848 Methyltransferase small domain YPZ3_2554 IPR036063 Smr domain superfamily YPZ3_2554 IPR002625 Smr domain YPZ3_2554 IPR022990 Uncharacterised protein family UPF0115 YPZ3_2555 IPR029033 Histidine phosphatase superfamily YPZ3_2555 IPR013078 Histidine phosphatase superfamily, clade-1 YPZ3_2555 IPR004449 Phosphohistidine phosphatase SixA YPZ3_2556 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding YPZ3_2556 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site YPZ3_2556 IPR012802 Fatty oxidation complex, alpha subunit FadJ YPZ3_2556 IPR001753 Enoyl-CoA hydratase/isomerase YPZ3_2556 IPR029045 ClpP/crotonase-like domain superfamily YPZ3_2556 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPZ3_2556 IPR036291 NAD(P)-binding domain superfamily YPZ3_2556 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal YPZ3_2557 IPR012806 Acetyl-CoA C-acyltransferase FadI YPZ3_2557 IPR020613 Thiolase, conserved site YPZ3_2557 IPR020617 Thiolase, C-terminal YPZ3_2557 IPR020610 Thiolase, active site YPZ3_2557 IPR020615 Thiolase, acyl-enzyme intermediate active site YPZ3_2557 IPR016039 Thiolase-like YPZ3_2557 IPR002155 Thiolase YPZ3_2557 IPR020616 Thiolase, N-terminal YPZ3_2558 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPZ3_2558 IPR042117 OMPP1/FadL/TodX superfamily YPZ3_2559 IPR007428 MlaA lipoprotein YPZ3_2560 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily YPZ3_2560 IPR005616 CcmH/CycL/Ccl2/NrfF family YPZ3_2560 IPR013026 Tetratricopeptide repeat-containing domain YPZ3_2560 IPR011990 Tetratricopeptide-like helical domain superfamily YPZ3_2560 IPR019734 Tetratricopeptide repeat YPZ3_2561 IPR005616 CcmH/CycL/Ccl2/NrfF family YPZ3_2561 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily YPZ3_2561 IPR011990 Tetratricopeptide-like helical domain superfamily YPZ3_2561 IPR013026 Tetratricopeptide repeat-containing domain YPZ3_2561 IPR019734 Tetratricopeptide repeat YPZ3_2562 IPR013766 Thioredoxin domain YPZ3_2562 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE YPZ3_2562 IPR013740 Redoxin YPZ3_2562 IPR036249 Thioredoxin-like superfamily YPZ3_2562 IPR017937 Thioredoxin, conserved site YPZ3_2563 IPR003567 Cytochrome c-type biogenesis protein YPZ3_2563 IPR002541 Cytochrome c assembly protein YPZ3_2563 IPR003568 Cytochrome c-type biogenesis protein CcmF YPZ3_2563 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal YPZ3_2564 IPR004329 CcmE/CycJ protein YPZ3_2564 IPR036127 CcmE-like superfamily YPZ3_2565 IPR007078 Haem exporter protein D (CcmD) YPZ3_2566 IPR002541 Cytochrome c assembly protein YPZ3_2566 IPR003557 Cytochrome c-type biogenesis protein CcmC YPZ3_2567 IPR003544 Cytochrome c-type biogenesis protein CcmB YPZ3_2567 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria YPZ3_2568 IPR003439 ABC transporter-like YPZ3_2568 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2568 IPR003593 AAA+ ATPase domain YPZ3_2568 IPR017871 ABC transporter, conserved site YPZ3_2568 IPR005895 ABC transporter, haem export, CcmA YPZ3_2570 IPR007156 LemA YPZ3_2570 IPR023353 LemA-like domain superfamily YPZ3_2572 IPR013987 PhnA protein, N-terminal YPZ3_2572 IPR013988 PhnA protein, C-terminal YPZ3_2572 IPR004624 PhnA protein YPZ3_2577 IPR006531 Gp5 N-terminal YPZ3_2577 IPR037026 Vgr protein, OB-fold domain superfamily YPZ3_2577 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPZ3_2577 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPZ3_2580 IPR003593 AAA+ ATPase domain YPZ3_2580 IPR002611 IstB-like ATP-binding protein YPZ3_2580 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_2580 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2580 IPR001270 ClpA/B family YPZ3_2581 IPR006120 Resolvase, HTH domain YPZ3_2581 IPR012337 Ribonuclease H-like superfamily YPZ3_2581 IPR017894 HTH domain, IS21 transposase-type YPZ3_2581 IPR036397 Ribonuclease H superfamily YPZ3_2581 IPR001584 Integrase, catalytic core YPZ3_2589 IPR037224 PapC, N-terminal domain superfamily YPZ3_2589 IPR025885 PapC, N-terminal domain YPZ3_2589 IPR025949 PapC-like, C-terminal domain YPZ3_2589 IPR042186 Outer membrane usher protein FimD, plug domain YPZ3_2589 IPR018030 Fimbrial membrane usher, conserved site YPZ3_2589 IPR000015 Outer membrane usher protein YPZ3_2590 IPR001207 Transposase, mutator type YPZ3_2591 IPR000015 Outer membrane usher protein YPZ3_2591 IPR018030 Fimbrial membrane usher, conserved site YPZ3_2591 IPR042186 Outer membrane usher protein FimD, plug domain YPZ3_2591 IPR025885 PapC, N-terminal domain YPZ3_2591 IPR025949 PapC-like, C-terminal domain YPZ3_2591 IPR037224 PapC, N-terminal domain superfamily YPZ3_2592 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPZ3_2592 IPR016148 Pili assembly chaperone, C-terminal YPZ3_2592 IPR016147 Pili assembly chaperone, N-terminal YPZ3_2592 IPR008962 PapD-like superfamily YPZ3_2592 IPR013783 Immunoglobulin-like fold YPZ3_2592 IPR001829 Pili assembly chaperone, bacterial YPZ3_2592 IPR018046 Pili assembly chaperone, conserved site YPZ3_2593 IPR008966 Adhesion domain superfamily YPZ3_2593 IPR036937 Fimbrial-type adhesion domain superfamily YPZ3_2593 IPR039458 FimA-like YPZ3_2594 IPR018368 ClpA/B, conserved site 1 YPZ3_2594 IPR041546 ClpA/ClpB, AAA lid domain YPZ3_2594 IPR001270 ClpA/B family YPZ3_2594 IPR004176 Clp, N-terminal YPZ3_2594 IPR003959 ATPase, AAA-type, core YPZ3_2594 IPR036628 Clp, N-terminal domain superfamily YPZ3_2594 IPR019489 Clp ATPase, C-terminal YPZ3_2594 IPR028299 ClpA/B, conserved site 2 YPZ3_2594 IPR003593 AAA+ ATPase domain YPZ3_2594 IPR017729 Type VI secretion system, ATPase ClpV1 YPZ3_2594 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2604 IPR023346 Lysozyme-like domain superfamily YPZ3_2604 IPR011757 Lytic transglycosylase MltB YPZ3_2604 IPR031304 Transglycosylase SLT domain 2 YPZ3_2605 IPR026045 Ferric binding protein YPZ3_2605 IPR006061 Solute-binding family 1, conserved site YPZ3_2606 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2606 IPR035906 MetI-like superfamily YPZ3_2607 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2607 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_2607 IPR030287 Fe(3+) ions import ATP-binding protein FbpC YPZ3_2607 IPR015853 ABC transporter, ferric cation import, FbpC YPZ3_2607 IPR017871 ABC transporter, conserved site YPZ3_2607 IPR003593 AAA+ ATPase domain YPZ3_2607 IPR003439 ABC transporter-like YPZ3_2610 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPZ3_2610 IPR006311 Twin-arginine translocation pathway, signal sequence YPZ3_2610 IPR006656 Molybdopterin oxidoreductase YPZ3_2610 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE YPZ3_2610 IPR009010 Aspartate decarboxylase-like domain superfamily YPZ3_2610 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPZ3_2610 IPR006657 Molybdopterin dinucleotide-binding domain YPZ3_2611 IPR014297 Dimethylsulphoxide reductase, chain B YPZ3_2611 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_2611 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPZ3_2612 IPR007059 DMSO reductase anchor subunit (DmsC) YPZ3_2613 IPR036411 TorD-like superfamily YPZ3_2613 IPR020945 DMSO/Nitrate reductase chaperone YPZ3_2613 IPR028611 Tat proofreading chaperone DmsD YPZ3_2613 IPR026269 Tat proofreading chaperone DmsD-type YPZ3_2615 IPR008517 Protein of unknown function DUF799 YPZ3_2617 IPR005534 Curli production assembly/transport component CsgG YPZ3_2619 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPZ3_2619 IPR016174 Di-haem cytochrome, transmembrane YPZ3_2620 IPR004839 Aminotransferase, class I/classII YPZ3_2620 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_2620 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_2620 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_2621 IPR010856 Protein of unknown function DUF1479 YPZ3_2621 IPR027443 Isopenicillin N synthase-like YPZ3_2622 IPR003836 Glucokinase YPZ3_2624 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2624 IPR000847 Transcription regulator HTH, LysR YPZ3_2624 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_2624 IPR005119 LysR, substrate-binding YPZ3_2625 IPR036812 NADP-dependent oxidoreductase domain superfamily YPZ3_2625 IPR023210 NADP-dependent oxidoreductase domain YPZ3_2627 IPR001046 NRAMP family YPZ3_2628 IPR008276 Concentrative nucleoside transporter YPZ3_2628 IPR011657 Concentrative nucleoside transporter C-terminal domain YPZ3_2628 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial YPZ3_2628 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain YPZ3_2628 IPR002668 Concentrative nucleoside transporter N-terminal domain YPZ3_2629 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPZ3_2629 IPR033910 Glutamyl-tRNA synthetase YPZ3_2629 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPZ3_2629 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2629 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial YPZ3_2629 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPZ3_2629 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 YPZ3_2629 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding YPZ3_2633 IPR001357 BRCT domain YPZ3_2633 IPR036420 BRCT domain superfamily YPZ3_2633 IPR041663 DisA/LigA, helix-hairpin-helix motif YPZ3_2633 IPR018239 NAD-dependent DNA ligase, active site YPZ3_2633 IPR033136 NAD-dependent DNA ligase, conserved site YPZ3_2633 IPR004150 NAD-dependent DNA ligase, OB-fold YPZ3_2633 IPR013839 NAD-dependent DNA ligase, adenylation YPZ3_2633 IPR013840 NAD-dependent DNA ligase, N-terminal YPZ3_2633 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPZ3_2633 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type YPZ3_2633 IPR010994 RuvA domain 2-like YPZ3_2633 IPR012340 Nucleic acid-binding, OB-fold YPZ3_2633 IPR001679 NAD-dependent DNA ligase YPZ3_2634 IPR011919 Cell division protein ZipA YPZ3_2634 IPR007449 ZipA, C-terminal FtsZ-binding domain YPZ3_2634 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily YPZ3_2635 IPR022985 Sulfate transporter CysZ YPZ3_2636 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPZ3_2636 IPR001926 Pyridoxal-phosphate dependent enzyme YPZ3_2636 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPZ3_2636 IPR005859 Cysteine synthase CysK YPZ3_2636 IPR005856 Cysteine synthase YPZ3_2637 IPR000121 PEP-utilising enzyme, C-terminal YPZ3_2637 IPR006318 Phosphotransferase system, enzyme I-like YPZ3_2637 IPR024692 Phosphotransferase system, enzyme I YPZ3_2637 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPZ3_2637 IPR036618 PtsI, HPr-binding domain superfamily YPZ3_2637 IPR040442 Pyruvate kinase-like domain superfamily YPZ3_2637 IPR008731 Phosphotransferase system, enzyme I N-terminal YPZ3_2637 IPR008279 PEP-utilising enzyme, mobile domain YPZ3_2637 IPR018274 PEP-utilising enzyme, active site YPZ3_2637 IPR023151 PEP-utilising enzyme, conserved site YPZ3_2637 IPR036637 Phosphohistidine domain superfamily YPZ3_2638 IPR011055 Duplicated hybrid motif YPZ3_2638 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 YPZ3_2640 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_2640 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_2640 IPR003660 HAMP domain YPZ3_2640 IPR005467 Histidine kinase domain YPZ3_2640 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_2640 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_2640 IPR038515 CpxA, periplasmic domain superfamily YPZ3_2640 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_2640 IPR032404 Two-component sensor protein CpxA, periplasmic domain YPZ3_2641 IPR039420 Transcriptional regulatory protein WalR-like YPZ3_2641 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2641 IPR001867 OmpR/PhoB-type DNA-binding domain YPZ3_2641 IPR001789 Signal transduction response regulator, receiver domain YPZ3_2641 IPR011006 CheY-like superfamily YPZ3_2642 IPR006143 RND efflux pump, membrane fusion protein YPZ3_2642 IPR030190 Macrolide export protein MacA YPZ3_2642 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPZ3_2643 IPR017871 ABC transporter, conserved site YPZ3_2643 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2643 IPR003593 AAA+ ATPase domain YPZ3_2643 IPR025857 MacB-like periplasmic core domain YPZ3_2643 IPR003838 ABC transporter permease protein domain YPZ3_2643 IPR003439 ABC transporter-like YPZ3_2643 IPR017911 ABC transporter, macrolide export, ATP-binding domain YPZ3_2644 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPZ3_2644 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPZ3_2644 IPR023753 FAD/NAD(P)-binding domain YPZ3_2644 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_2644 IPR023536 Coenzyme A disulphide reductase, staphyolococci YPZ3_2644 IPR017758 Coenzyme A disulphide reductase YPZ3_2645 IPR038377 Sodium/glucose symporter superfamily YPZ3_2645 IPR001734 Sodium/solute symporter YPZ3_2646 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPZ3_2646 IPR007865 Aminopeptidase P, N-terminal YPZ3_2646 IPR000994 Peptidase M24 YPZ3_2646 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPZ3_2646 IPR036005 Creatinase/aminopeptidase-like YPZ3_2647 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_2647 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_2647 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_2647 IPR027619 Putative C-S lyase YPZ3_2647 IPR004839 Aminotransferase, class I/classII YPZ3_2649 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_2649 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_2649 IPR003660 HAMP domain YPZ3_2649 IPR005467 Histidine kinase domain YPZ3_2649 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_2649 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_2649 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_2650 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_2650 IPR001789 Signal transduction response regulator, receiver domain YPZ3_2650 IPR001867 OmpR/PhoB-type DNA-binding domain YPZ3_2650 IPR039420 Transcriptional regulatory protein WalR-like YPZ3_2650 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2650 IPR011006 CheY-like superfamily YPZ3_2652 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPZ3_2652 IPR001926 Pyridoxal-phosphate dependent enzyme YPZ3_2652 IPR005856 Cysteine synthase YPZ3_2652 IPR005858 Cysteine synthase CysM YPZ3_2652 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPZ3_2653 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_2653 IPR017871 ABC transporter, conserved site YPZ3_2653 IPR003439 ABC transporter-like YPZ3_2653 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal YPZ3_2653 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2653 IPR005666 Sulphate transport system permease protein 1 YPZ3_2653 IPR003593 AAA+ ATPase domain YPZ3_2654 IPR035906 MetI-like superfamily YPZ3_2654 IPR005667 Sulphate ABC transporter permease protein 2 YPZ3_2654 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2654 IPR011866 Sulphate ABC transporter, permease protein CysW YPZ3_2655 IPR011865 Sulphate ABC transporter, permease protein CysT YPZ3_2655 IPR035906 MetI-like superfamily YPZ3_2655 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2655 IPR005667 Sulphate ABC transporter permease protein 2 YPZ3_2656 IPR000957 Sulphate/thiosulphate-binding, conserved site YPZ3_2656 IPR005669 Thiosulphate/Sulfate-binding protein YPZ3_2656 IPR034408 Sulphate/thiosulphate-binding site YPZ3_2657 IPR020846 Major facilitator superfamily domain YPZ3_2657 IPR004742 Sialic acid transporter YPZ3_2657 IPR036259 MFS transporter superfamily YPZ3_2657 IPR011701 Major facilitator superfamily YPZ3_2658 IPR001347 Sugar isomerase (SIS) YPZ3_2658 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2658 IPR009057 Homeobox-like domain superfamily YPZ3_2658 IPR000281 Helix-turn-helix protein RpiR YPZ3_2658 IPR035472 RpiR-like, SIS domain YPZ3_2659 IPR004375 YhcH/YjgK/YiaL family YPZ3_2659 IPR037012 YhcH/YjgK/YiaL superfamily YPZ3_2660 IPR000600 ROK family YPZ3_2660 IPR023945 N-acetylmannosamine kinase, bacterial YPZ3_2661 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPZ3_2661 IPR001611 Leucine-rich repeat YPZ3_2661 IPR032675 Leucine-rich repeat domain superfamily YPZ3_2663 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase YPZ3_2663 IPR013785 Aldolase-type TIM barrel YPZ3_2663 IPR011060 Ribulose-phosphate binding barrel YPZ3_2664 IPR002220 DapA-like YPZ3_2664 IPR005264 N-acetylneuraminate lyase YPZ3_2664 IPR013785 Aldolase-type TIM barrel YPZ3_2664 IPR020625 Schiff base-forming aldolase, active site YPZ3_2665 IPR011008 Dimeric alpha-beta barrel YPZ3_2665 IPR006314 Dyp-type peroxidase YPZ3_2666 IPR010938 Protein of unknown function DUF1131 YPZ3_2666 IPR038714 YfeY-like superfamily YPZ3_2667 IPR016052 Bacteriophage 933W, L0136 YPZ3_2667 IPR005220 Bacterial OB-fold YPZ3_2667 IPR036700 Bacterial OB-fold superfamily YPZ3_2668 IPR004899 Pertactin, central region YPZ3_2668 IPR030930 Adhesin of bacterial autotransporter system YPZ3_2668 IPR005546 Autotransporter beta-domain YPZ3_2668 IPR024973 ESPR domain YPZ3_2668 IPR006315 Outer membrane autotransporter barrel YPZ3_2668 IPR036709 Autotransporter beta-domain superfamily YPZ3_2668 IPR011050 Pectin lyase fold/virulence factor YPZ3_2668 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPZ3_2668 IPR003991 Pertactin virulence factor family YPZ3_2670 IPR023072 Acetyltransferase, YpeA YPZ3_2670 IPR016181 Acyl-CoA N-acyltransferase YPZ3_2670 IPR000182 GNAT domain YPZ3_2671 IPR018375 Coproporphyrinogen III oxidase, conserved site YPZ3_2671 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily YPZ3_2671 IPR001260 Coproporphyrinogen III oxidase, aerobic YPZ3_2672 IPR003791 Protein of unknown function UPF0178 YPZ3_2673 IPR015884 Malic enzyme, conserved site YPZ3_2673 IPR012301 Malic enzyme, N-terminal domain YPZ3_2673 IPR037062 Malic enzyme, N-terminal domain superfamily YPZ3_2673 IPR012302 Malic enzyme, NAD-binding YPZ3_2673 IPR012188 NAD(P)-dependent malic enzyme YPZ3_2673 IPR036291 NAD(P)-binding domain superfamily YPZ3_2673 IPR042112 Phosphate acetyltransferase, domain 2 YPZ3_2673 IPR002505 Phosphate acetyl/butaryl transferase YPZ3_2673 IPR042113 Phosphate acetyltransferase, domain 1 YPZ3_2674 IPR004385 Nucleoside diphosphate pyrophosphatase YPZ3_2674 IPR015797 NUDIX hydrolase-like domain superfamily YPZ3_2674 IPR000086 NUDIX hydrolase domain YPZ3_2675 IPR024717 Denitrification system component NapC/NirT/NrfH YPZ3_2675 IPR011031 Multihaem cytochrome YPZ3_2675 IPR038266 NapC/NirT cytochrome c superfamily YPZ3_2675 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT YPZ3_2675 IPR036280 Multiheme cytochrome superfamily YPZ3_2675 IPR005126 NapC/NirT cytochrome c, N-terminal YPZ3_2676 IPR036280 Multiheme cytochrome superfamily YPZ3_2676 IPR011031 Multihaem cytochrome YPZ3_2676 IPR005591 Nitrate reductase cytochrome c-type subunit NapB YPZ3_2677 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPZ3_2677 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPZ3_2677 IPR006656 Molybdopterin oxidoreductase YPZ3_2677 IPR006657 Molybdopterin dinucleotide-binding domain YPZ3_2677 IPR041957 Nitrate reductase NapA-like, molybdopterin-binding domain YPZ3_2677 IPR009010 Aspartate decarboxylase-like domain superfamily YPZ3_2677 IPR006311 Twin-arginine translocation pathway, signal sequence YPZ3_2677 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPZ3_2677 IPR010051 Periplasmic nitrate reductase, large subunit YPZ3_2678 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_2678 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPZ3_2678 IPR004496 Ferredoxin-type protein NapF YPZ3_2679 IPR001789 Signal transduction response regulator, receiver domain YPZ3_2679 IPR000792 Transcription regulator LuxR, C-terminal YPZ3_2679 IPR011006 CheY-like superfamily YPZ3_2679 IPR016032 Signal transduction response regulator, C-terminal effector YPZ3_2680 IPR001036 Acriflavin resistance protein YPZ3_2680 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPZ3_2680 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPZ3_2682 IPR007404 LexA-binding, inner membrane-associated putative hydrolase YPZ3_2683 IPR023885 4Fe4S-binding SPASM domain YPZ3_2683 IPR034491 Anaerobic Ser-type sulfatase-maturating enzyme YPZ3_2683 IPR013785 Aldolase-type TIM barrel YPZ3_2683 IPR007197 Radical SAM YPZ3_2684 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPZ3_2684 IPR000917 Sulfatase, N-terminal YPZ3_2684 IPR024607 Sulfatase, conserved site YPZ3_2685 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_2685 IPR017871 ABC transporter, conserved site YPZ3_2685 IPR003593 AAA+ ATPase domain YPZ3_2685 IPR003439 ABC transporter-like YPZ3_2685 IPR013611 Transport-associated OB, type 2 YPZ3_2685 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPZ3_2685 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YPZ3_2685 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2686 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2686 IPR035906 MetI-like superfamily YPZ3_2689 IPR006504 Transcriptional regulator Spx/MgsR YPZ3_2689 IPR006660 Arsenate reductase-like YPZ3_2689 IPR036249 Thioredoxin-like superfamily YPZ3_2690 IPR036264 Bacterial exopeptidase dimerisation domain YPZ3_2690 IPR002933 Peptidase M20 YPZ3_2690 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPZ3_2690 IPR011650 Peptidase M20, dimerisation domain YPZ3_2690 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria YPZ3_2691 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily YPZ3_2691 IPR003709 Peptidase M15B YPZ3_2692 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain YPZ3_2692 IPR038321 TmcA, C-terminal domain superfamily YPZ3_2692 IPR032672 TmcA/NAT10/Kre33 YPZ3_2692 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2692 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal YPZ3_2692 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA YPZ3_2692 IPR007807 Helicase domain YPZ3_2692 IPR000182 GNAT domain YPZ3_2692 IPR016181 Acyl-CoA N-acyltransferase YPZ3_2693 IPR007382 Uncharacterised protein family UPF0756, transmembrame YPZ3_2694 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative YPZ3_2695 IPR018236 SAICAR synthetase, conserved site YPZ3_2695 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase YPZ3_2695 IPR033934 Bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide synthase YPZ3_2695 IPR028923 SAICAR synthetase/ADE2, N-terminal YPZ3_2696 IPR002686 Transposase IS200-like YPZ3_2696 IPR036515 Transposase IS200-like superfamily YPZ3_2697 IPR014524 Outer membrane protein assembly factor BamC YPZ3_2697 IPR042268 Outer membrane protein assembly factor BamC, C-terminal YPZ3_2697 IPR010653 NlpB/DapX lipoprotein YPZ3_2698 IPR002220 DapA-like YPZ3_2698 IPR013785 Aldolase-type TIM barrel YPZ3_2698 IPR020624 Schiff base-forming aldolase, conserved site YPZ3_2698 IPR020625 Schiff base-forming aldolase, active site YPZ3_2698 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA YPZ3_2699 IPR002912 ACT domain YPZ3_2699 IPR016867 Glycine cleavage system transcriptional repressor YPZ3_2700 IPR036249 Thioredoxin-like superfamily YPZ3_2700 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YPZ3_2700 IPR024706 Peroxiredoxin, AhpC-type YPZ3_2700 IPR013766 Thioredoxin domain YPZ3_2702 IPR002549 Transmembrane protein TqsA-like YPZ3_2703 IPR011716 Tetratricopeptide TPR-3 YPZ3_2703 IPR011990 Tetratricopeptide-like helical domain superfamily YPZ3_2703 IPR030873 Beta-barrel assembly-enhancing protease YPZ3_2703 IPR001915 Peptidase M48 YPZ3_2704 IPR006659 Arsenate reductase YPZ3_2704 IPR006660 Arsenate reductase-like YPZ3_2704 IPR036249 Thioredoxin-like superfamily YPZ3_2705 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2705 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae YPZ3_2705 IPR017788 DnaA regulatory inactivator Hda YPZ3_2705 IPR020591 Chromosomal replication control, initiator DnaA-like YPZ3_2705 IPR013317 Chromosomal replication initiator protein DnaA YPZ3_2706 IPR002686 Transposase IS200-like YPZ3_2706 IPR036515 Transposase IS200-like superfamily YPZ3_2707 IPR032678 tRNA synthetases class I, catalytic domain YPZ3_2707 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2707 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase YPZ3_2707 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPZ3_2707 IPR015803 Cysteine-tRNA ligase YPZ3_2707 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR YPZ3_2708 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain YPZ3_2708 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site YPZ3_2708 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase YPZ3_2708 IPR029000 Cyclophilin-like domain superfamily YPZ3_2709 IPR010138 UDP-2,3-diacylglucosamine hydrolase YPZ3_2709 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPZ3_2709 IPR029052 Metallo-dependent phosphatase-like YPZ3_2710 IPR035893 PurE domain superfamily YPZ3_2710 IPR000031 PurE domain YPZ3_2710 IPR033747 Class I PurE YPZ3_2710 IPR024694 PurE, prokaryotic type YPZ3_2711 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YPZ3_2711 IPR013815 ATP-grasp fold, subdomain 1 YPZ3_2711 IPR016185 Pre-ATP-grasp domain superfamily YPZ3_2711 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit YPZ3_2711 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain YPZ3_2711 IPR011054 Rudiment single hybrid motif YPZ3_2711 IPR011761 ATP-grasp fold YPZ3_2712 IPR038766 Membrane component of ABC transporter, predicted YPZ3_2713 IPR003593 AAA+ ATPase domain YPZ3_2713 IPR003439 ABC transporter-like YPZ3_2713 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2713 IPR017871 ABC transporter, conserved site YPZ3_2714 IPR008265 Lipase, GDSL, active site YPZ3_2714 IPR013830 SGNH hydrolase-type esterase domain YPZ3_2714 IPR036514 SGNH hydrolase superfamily YPZ3_2715 IPR002347 Short-chain dehydrogenase/reductase SDR YPZ3_2715 IPR036291 NAD(P)-binding domain superfamily YPZ3_2715 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPZ3_2716 IPR011990 Tetratricopeptide-like helical domain superfamily YPZ3_2716 IPR036249 Thioredoxin-like superfamily YPZ3_2716 IPR013766 Thioredoxin domain YPZ3_2717 IPR001972 Stomatin family YPZ3_2717 IPR032435 Band 7, C-terminal extension YPZ3_2717 IPR018080 Band 7/stomatin-like, conserved site YPZ3_2717 IPR036013 Band 7/SPFH domain superfamily YPZ3_2717 IPR001107 Band 7 domain YPZ3_2718 IPR002810 NfeD-like, C-terminal domain YPZ3_2719 IPR000551 MerR-type HTH domain YPZ3_2719 IPR009061 Putative DNA-binding domain superfamily YPZ3_2719 IPR011789 Cu(I)-responsive transcriptional regulator YPZ3_2720 IPR023299 P-type ATPase, cytoplasmic domain N YPZ3_2720 IPR001757 P-type ATPase YPZ3_2720 IPR027256 P-type ATPase, subfamily IB YPZ3_2720 IPR036163 Heavy metal-associated domain superfamily YPZ3_2720 IPR006121 Heavy metal-associated domain, HMA YPZ3_2720 IPR018303 P-type ATPase, phosphorylation site YPZ3_2720 IPR023298 P-type ATPase, transmembrane domain superfamily YPZ3_2720 IPR017969 Heavy-metal-associated, conserved site YPZ3_2720 IPR023214 HAD superfamily YPZ3_2720 IPR036412 HAD-like superfamily YPZ3_2720 IPR008250 P-type ATPase, A domain superfamily YPZ3_2721 IPR002816 TraB family YPZ3_2722 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC YPZ3_2722 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain YPZ3_2722 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily YPZ3_2723 IPR006179 5'-Nucleotidase/apyrase YPZ3_2723 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPZ3_2723 IPR006146 5'-Nucleotidase, conserved site YPZ3_2723 IPR008334 5'-Nucleotidase, C-terminal YPZ3_2723 IPR029052 Metallo-dependent phosphatase-like YPZ3_2723 IPR036907 5'-Nucleotidase, C-terminal domain superfamily YPZ3_2724 IPR008334 5'-Nucleotidase, C-terminal YPZ3_2724 IPR006179 5'-Nucleotidase/apyrase YPZ3_2724 IPR029052 Metallo-dependent phosphatase-like YPZ3_2724 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPZ3_2724 IPR006146 5'-Nucleotidase, conserved site YPZ3_2724 IPR036907 5'-Nucleotidase, C-terminal domain superfamily YPZ3_2725 IPR011701 Major facilitator superfamily YPZ3_2725 IPR020846 Major facilitator superfamily domain YPZ3_2725 IPR036259 MFS transporter superfamily YPZ3_2726 IPR004771 K+/H+ exchanger YPZ3_2726 IPR038770 Sodium/solute symporter superfamily YPZ3_2726 IPR036291 NAD(P)-binding domain superfamily YPZ3_2726 IPR003148 Regulator of K+ conductance, N-terminal YPZ3_2726 IPR006153 Cation/H+ exchanger YPZ3_2727 IPR029056 Ribokinase-like YPZ3_2727 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPZ3_2727 IPR011611 Carbohydrate kinase PfkB YPZ3_2728 IPR003856 Polysaccharide chain length determinant N-terminal domain YPZ3_2729 IPR016066 Alpha-D-phosphohexomutase, conserved site YPZ3_2729 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YPZ3_2729 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPZ3_2729 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPZ3_2729 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPZ3_2729 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPZ3_2729 IPR005841 Alpha-D-phosphohexomutase superfamily YPZ3_2729 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPZ3_2730 IPR001173 Glycosyltransferase 2-like YPZ3_2730 IPR029044 Nucleotide-diphospho-sugar transferases YPZ3_2731 IPR011051 RmlC-like cupin domain superfamily YPZ3_2731 IPR014710 RmlC-like jelly roll fold YPZ3_2731 IPR029044 Nucleotide-diphospho-sugar transferases YPZ3_2731 IPR005835 Nucleotidyl transferase domain YPZ3_2731 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal YPZ3_2731 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YPZ3_2732 IPR036291 NAD(P)-binding domain superfamily YPZ3_2732 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase YPZ3_2732 IPR001509 NAD-dependent epimerase/dehydratase YPZ3_2733 IPR006368 GDP-mannose 4,6-dehydratase YPZ3_2733 IPR016040 NAD(P)-binding domain YPZ3_2733 IPR036291 NAD(P)-binding domain superfamily YPZ3_2734 IPR006368 GDP-mannose 4,6-dehydratase YPZ3_2734 IPR016040 NAD(P)-binding domain YPZ3_2734 IPR036291 NAD(P)-binding domain superfamily YPZ3_2735 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain YPZ3_2735 IPR001296 Glycosyl transferase, family 1 YPZ3_2741 IPR036291 NAD(P)-binding domain superfamily YPZ3_2741 IPR001509 NAD-dependent epimerase/dehydratase YPZ3_2742 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPZ3_2742 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_2742 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_2742 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_2743 IPR036291 NAD(P)-binding domain superfamily YPZ3_2743 IPR016040 NAD(P)-binding domain YPZ3_2743 IPR013445 CDP-glucose 4,6-dehydratase YPZ3_2744 IPR029044 Nucleotide-diphospho-sugar transferases YPZ3_2744 IPR005835 Nucleotidyl transferase domain YPZ3_2744 IPR013446 Glucose-1-phosphate cytidylyltransferase YPZ3_2745 IPR036010 2Fe-2S ferredoxin-like superfamily YPZ3_2745 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPZ3_2745 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPZ3_2745 IPR012675 Beta-grasp domain superfamily YPZ3_2745 IPR017927 FAD-binding domain, ferredoxin reductase-type YPZ3_2745 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPZ3_2745 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPZ3_2745 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPZ3_2745 IPR017938 Riboflavin synthase-like beta-barrel YPZ3_2746 IPR033644 Ferrochelatase, C-terminal YPZ3_2746 IPR001015 Ferrochelatase YPZ3_2746 IPR019772 Ferrochelatase, active site YPZ3_2746 IPR033659 Ferrochelatase, N-terminal YPZ3_2747 IPR006259 Adenylate kinase subfamily YPZ3_2747 IPR000850 Adenylate kinase/UMP-CMP kinase YPZ3_2747 IPR033690 Adenylate kinase, conserved site YPZ3_2747 IPR007862 Adenylate kinase, active site lid domain YPZ3_2747 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2748 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_2748 IPR019805 Heat shock protein Hsp90, conserved site YPZ3_2748 IPR020575 Heat shock protein Hsp90, N-terminal YPZ3_2748 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_2748 IPR037196 HSP90, C-terminal domain YPZ3_2748 IPR001404 Heat shock protein Hsp90 family YPZ3_2748 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_2749 IPR023627 Recombination protein RecR YPZ3_2749 IPR034137 RecR, TOPRIM domain YPZ3_2749 IPR006171 TOPRIM domain YPZ3_2749 IPR015967 Recombination protein RecR, conserved site YPZ3_2749 IPR023628 Recombination protein RecR, C4-type zinc finger YPZ3_2749 IPR000093 DNA recombination protein RecR YPZ3_2750 IPR004401 Nucleoid-associated protein YbaB/EbfC family YPZ3_2750 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily YPZ3_2751 IPR001270 ClpA/B family YPZ3_2751 IPR003593 AAA+ ATPase domain YPZ3_2751 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV YPZ3_2751 IPR012763 DNA polymerase III, subunit gamma/ tau YPZ3_2751 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPZ3_2751 IPR022754 DNA polymerase III, gamma subunit, domain III YPZ3_2751 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily YPZ3_2751 IPR021029 DNA polymerase III, tau subunit, domain V YPZ3_2751 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2752 IPR029057 Phosphoribosyltransferase-like YPZ3_2752 IPR000836 Phosphoribosyltransferase domain YPZ3_2752 IPR005764 Adenine phosphoribosyl transferase YPZ3_2754 IPR023408 Mechanosensitive ion channel MscS domain superfamily YPZ3_2754 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YPZ3_2754 IPR024393 Mechanosensitive ion channel MscS, porin domain YPZ3_2754 IPR006686 Mechanosensitive ion channel MscS, conserved site YPZ3_2754 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPZ3_2754 IPR006685 Mechanosensitive ion channel MscS YPZ3_2754 IPR010920 LSM domain superfamily YPZ3_2754 IPR023298 P-type ATPase, transmembrane domain superfamily YPZ3_2754 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPZ3_2755 IPR027396 DsrEFH-like YPZ3_2755 IPR003787 Sulphur relay, DsrE/F-like protein YPZ3_2756 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPZ3_2756 IPR013572 Transcription regulator MAATS, C-terminal YPZ3_2756 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPZ3_2756 IPR009057 Homeobox-like domain superfamily YPZ3_2756 IPR001647 DNA-binding HTH domain, TetR-type YPZ3_2757 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPZ3_2757 IPR006143 RND efflux pump, membrane fusion protein YPZ3_2758 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPZ3_2758 IPR001036 Acriflavin resistance protein YPZ3_2758 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPZ3_2760 IPR019693 Biofilm formation regulator YbaJ YPZ3_2761 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2761 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPZ3_2761 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain YPZ3_2762 IPR039366 YscW/ExsB YPZ3_2763 IPR029069 HotDog domain superfamily YPZ3_2763 IPR003703 Acyl-CoA thioesterase YPZ3_2764 IPR024041 Ammonium transporter AmtB-like domain YPZ3_2764 IPR018047 Ammonium transporter, conserved site YPZ3_2764 IPR001905 Ammonium transporter YPZ3_2764 IPR029020 Ammonium/urea transporter YPZ3_2765 IPR002332 Nitrogen regulatory protein P-II, urydylation site YPZ3_2765 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPZ3_2765 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPZ3_2765 IPR002187 Nitrogen regulatory protein PII YPZ3_2765 IPR017918 Nitrogen regulatory protein PII, conserved site YPZ3_2766 IPR003593 AAA+ ATPase domain YPZ3_2766 IPR011527 ABC transporter type 1, transmembrane domain YPZ3_2766 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPZ3_2766 IPR017871 ABC transporter, conserved site YPZ3_2766 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2766 IPR039421 Type I protein exporter YPZ3_2766 IPR003439 ABC transporter-like YPZ3_2767 IPR039421 Type I protein exporter YPZ3_2767 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPZ3_2767 IPR003593 AAA+ ATPase domain YPZ3_2767 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2767 IPR017871 ABC transporter, conserved site YPZ3_2767 IPR003439 ABC transporter-like YPZ3_2767 IPR011527 ABC transporter type 1, transmembrane domain YPZ3_2768 IPR011008 Dimeric alpha-beta barrel YPZ3_2768 IPR000485 AsnC-type HTH domain YPZ3_2768 IPR019888 Transcription regulator AsnC-type YPZ3_2768 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPZ3_2768 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPZ3_2768 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_2768 IPR011991 ArsR-like helix-turn-helix domain YPZ3_2768 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2769 IPR005859 Cysteine synthase CysK YPZ3_2769 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPZ3_2769 IPR001926 Pyridoxal-phosphate dependent enzyme YPZ3_2769 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPZ3_2769 IPR005856 Cysteine synthase YPZ3_2770 IPR000150 Cof family YPZ3_2770 IPR036412 HAD-like superfamily YPZ3_2770 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPZ3_2770 IPR023214 HAD superfamily YPZ3_2770 IPR023938 HMP-PP phosphatase YPZ3_2771 IPR039424 Solute-binding protein family 5 YPZ3_2771 IPR000914 Solute-binding protein family 5 domain YPZ3_2771 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YPZ3_2772 IPR018317 Queuosine biosynthesis protein QueC YPZ3_2772 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2773 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family YPZ3_2773 IPR029069 HotDog domain superfamily YPZ3_2774 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPZ3_2774 IPR004509 Competence protein ComEA, helix-hairpin-helix domain YPZ3_2774 IPR010994 RuvA domain 2-like YPZ3_2775 IPR027304 Trigger factor/SurA domain superfamily YPZ3_2775 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site YPZ3_2775 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YPZ3_2776 IPR003959 ATPase, AAA-type, core YPZ3_2776 IPR027543 Lon protease, bacterial YPZ3_2776 IPR004815 Lon protease, bacterial/eukaryotic-type YPZ3_2776 IPR008269 Peptidase S16, Lon proteolytic domain YPZ3_2776 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPZ3_2776 IPR027065 Lon protease YPZ3_2776 IPR003111 Lon, substrate-binding domain YPZ3_2776 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2776 IPR003593 AAA+ ATPase domain YPZ3_2776 IPR008268 Peptidase S16, active site YPZ3_2776 IPR015947 PUA-like superfamily YPZ3_2776 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_2777 IPR003593 AAA+ ATPase domain YPZ3_2777 IPR003959 ATPase, AAA-type, core YPZ3_2777 IPR038366 Zinc finger, ClpX C4-type superfamily YPZ3_2777 IPR010603 Zinc finger, ClpX C4-type YPZ3_2777 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2777 IPR004487 Clp protease, ATP-binding subunit ClpX YPZ3_2777 IPR019489 Clp ATPase, C-terminal YPZ3_2778 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA YPZ3_2778 IPR029045 ClpP/crotonase-like domain superfamily YPZ3_2778 IPR001907 ATP-dependent Clp protease proteolytic subunit YPZ3_2778 IPR033135 ClpP, histidine active site YPZ3_2778 IPR018215 ClpP, Ser active site YPZ3_2779 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPZ3_2779 IPR005215 Trigger factor YPZ3_2779 IPR008880 Trigger factor, C-terminal YPZ3_2779 IPR037041 Trigger factor, C-terminal domain superfamily YPZ3_2779 IPR008881 Trigger factor, ribosome-binding, bacterial YPZ3_2779 IPR036611 Trigger factor ribosome-binding domain superfamily YPZ3_2779 IPR027304 Trigger factor/SurA domain superfamily YPZ3_2780 IPR002634 BolA protein YPZ3_2780 IPR036065 BolA-like superfamily YPZ3_2781 IPR005619 Uncharacterised protein family, YajG YPZ3_2781 IPR012640 Membrane lipoprotein, lipid attachment site YPZ3_2782 IPR036259 MFS transporter superfamily YPZ3_2782 IPR020846 Major facilitator superfamily domain YPZ3_2782 IPR011701 Major facilitator superfamily YPZ3_2782 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 YPZ3_2783 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like YPZ3_2783 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily YPZ3_2784 IPR008972 Cupredoxin YPZ3_2784 IPR010514 COX aromatic rich motif YPZ3_2784 IPR002429 Cytochrome c oxidase subunit II-like C-terminal YPZ3_2784 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain YPZ3_2784 IPR006333 Cytochrome o ubiquinol oxidase subunit II YPZ3_2784 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily YPZ3_2784 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain YPZ3_2785 IPR036927 Cytochrome c oxidase-like, subunit I superfamily YPZ3_2785 IPR014207 Cytochrome o ubiquinol oxidase, subunit I YPZ3_2785 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site YPZ3_2785 IPR000883 Cytochrome c oxidase subunit I YPZ3_2785 IPR023616 Cytochrome c oxidase-like, subunit I domain YPZ3_2786 IPR024791 Cytochrome c oxidase subunit III YPZ3_2786 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle YPZ3_2786 IPR000298 Cytochrome c oxidase subunit III-like YPZ3_2786 IPR014206 Cytochrome o ubiquinol oxidase, subunit III YPZ3_2786 IPR033946 Ubiquinol oxidase subunit III domain YPZ3_2786 IPR035973 Cytochrome c oxidase subunit III-like superfamily YPZ3_2787 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes YPZ3_2787 IPR014210 Cytochrome o ubiquinol oxidase subunit IV YPZ3_2788 IPR000537 UbiA prenyltransferase family YPZ3_2788 IPR030470 UbiA prenyltransferase conserved site YPZ3_2788 IPR006369 Protohaem IX farnesyltransferase YPZ3_2789 IPR036259 MFS transporter superfamily YPZ3_2789 IPR020846 Major facilitator superfamily domain YPZ3_2789 IPR011701 Major facilitator superfamily YPZ3_2790 IPR007551 Protein of unknown function DUF520 YPZ3_2790 IPR036183 YajQ-like superfamily YPZ3_2790 IPR035570 UPF0234, N-terminal YPZ3_2790 IPR035571 UPF0234-like, C-terminal YPZ3_2791 IPR003710 Ketopantoate reductase ApbA/PanE YPZ3_2791 IPR013752 Ketopantoate reductase, C-terminal domain YPZ3_2791 IPR013332 Ketopantoate reductase, N-terminal domain YPZ3_2791 IPR036291 NAD(P)-binding domain superfamily YPZ3_2791 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPZ3_2791 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPZ3_2792 IPR029062 Class I glutamine amidotransferase-like YPZ3_2792 IPR006287 Protein/nucleic acid deglycase DJ-1 YPZ3_2792 IPR002818 DJ-1/PfpI YPZ3_2793 IPR004114 THUMP domain YPZ3_2793 IPR020536 Thil, AANH domain YPZ3_2793 IPR026340 Thiazole biosynthesis domain YPZ3_2793 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2793 IPR036873 Rhodanese-like domain superfamily YPZ3_2793 IPR003720 tRNA sulfurtransferase ThiI YPZ3_2793 IPR001763 Rhodanese-like domain YPZ3_2794 IPR000092 Polyprenyl synthetase YPZ3_2794 IPR008949 Isoprenoid synthase domain superfamily YPZ3_2794 IPR033749 Polyprenyl synthetase, conserved site YPZ3_2795 IPR005475 Transketolase-like, pyrimidine-binding domain YPZ3_2795 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPZ3_2795 IPR005477 Deoxyxylulose-5-phosphate synthase YPZ3_2795 IPR033248 Transketolase, C-terminal domain YPZ3_2795 IPR005474 Transketolase, N-terminal YPZ3_2795 IPR020826 Transketolase binding site YPZ3_2795 IPR029061 Thiamin diphosphate-binding fold YPZ3_2797 IPR026037 Phosphatidylglycerophosphatase A YPZ3_2797 IPR036681 PgpA-like superfamily YPZ3_2797 IPR007686 YutG/PgpA domain YPZ3_2798 IPR006283 Thiamine-monophosphate kinase YPZ3_2798 IPR036921 PurM-like, N-terminal domain superfamily YPZ3_2798 IPR016188 PurM-like, N-terminal domain YPZ3_2798 IPR036676 PurM-like, C-terminal domain superfamily YPZ3_2798 IPR010918 PurM-like, C-terminal domain YPZ3_2799 IPR035926 NusB-like superfamily YPZ3_2799 IPR011605 NusB antitermination factor YPZ3_2799 IPR006027 NusB/RsmB/TIM44 YPZ3_2800 IPR002180 Lumazine/riboflavin synthase YPZ3_2800 IPR036467 Lumazine/riboflavin synthase superfamily YPZ3_2800 IPR034964 Lumazine synthase YPZ3_2801 IPR002125 Cytidine and deoxycytidylate deaminase domain YPZ3_2801 IPR016192 APOBEC/CMP deaminase, zinc-binding YPZ3_2801 IPR016193 Cytidine deaminase-like YPZ3_2801 IPR024072 Dihydrofolate reductase-like domain superfamily YPZ3_2801 IPR011549 Riboflavin-specific deaminase, C-terminal YPZ3_2801 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal YPZ3_2801 IPR004794 Riboflavin biosynthesis protein RibD YPZ3_2802 IPR003796 Ribonucleotide reductase regulator NrdR-like YPZ3_2802 IPR005144 ATP-cone domain YPZ3_2806 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YPZ3_2806 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YPZ3_2806 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPZ3_2806 IPR005665 Protein-export membrane protein SecF, bacterial YPZ3_2807 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YPZ3_2807 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPZ3_2807 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YPZ3_2807 IPR027398 SecD export protein N-terminal TM domain YPZ3_2807 IPR005791 Protein translocase subunit SecD YPZ3_2808 IPR003849 Preprotein translocase YajC YPZ3_2809 IPR036511 Queuine tRNA-ribosyltransferase-like YPZ3_2809 IPR004803 tRNA-guanine transglycosylase YPZ3_2809 IPR002616 tRNA-guanine(15) transglycosylase-like YPZ3_2810 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA YPZ3_2810 IPR042118 QueA, domain 1 YPZ3_2810 IPR042119 QueA, domain 2 YPZ3_2810 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily YPZ3_2811 IPR007431 Acyl carrier protein phosphodiesterase YPZ3_2811 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria YPZ3_2812 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YPZ3_2812 IPR013766 Thioredoxin domain YPZ3_2812 IPR019479 Peroxiredoxin, C-terminal YPZ3_2812 IPR036249 Thioredoxin-like superfamily YPZ3_2812 IPR024706 Peroxiredoxin, AhpC-type YPZ3_2813 IPR036515 Transposase IS200-like superfamily YPZ3_2813 IPR002686 Transposase IS200-like YPZ3_2814 IPR029055 Nucleophile aminohydrolases, N-terminal YPZ3_2814 IPR000101 Gamma-glutamyltranspeptidase YPZ3_2815 IPR002347 Short-chain dehydrogenase/reductase SDR YPZ3_2815 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YPZ3_2815 IPR036291 NAD(P)-binding domain superfamily YPZ3_2815 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPZ3_2816 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPZ3_2816 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain YPZ3_2816 IPR013780 Glycosyl hydrolase, all-beta YPZ3_2816 IPR017069 Maltodextrin glucosidase YPZ3_2816 IPR014756 Immunoglobulin E-set YPZ3_2816 IPR017853 Glycoside hydrolase superfamily YPZ3_2817 IPR004840 Amino acid permease, conserved site YPZ3_2817 IPR004841 Amino acid permease/ SLC12A domain YPZ3_2818 IPR004685 Branched-chain amino acid transport system II carrier protein YPZ3_2819 IPR011862 Phosphate binding protein YPZ3_2819 IPR024370 PBP domain YPZ3_2820 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_2820 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR YPZ3_2820 IPR000014 PAS domain YPZ3_2820 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_2820 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_2820 IPR005467 Histidine kinase domain YPZ3_2820 IPR013767 PAS fold YPZ3_2820 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_2820 IPR035965 PAS domain superfamily YPZ3_2820 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_2820 IPR021766 Phosphate regulon sensor protein PhoR YPZ3_2821 IPR001789 Signal transduction response regulator, receiver domain YPZ3_2821 IPR001867 OmpR/PhoB-type DNA-binding domain YPZ3_2821 IPR039420 Transcriptional regulatory protein WalR-like YPZ3_2821 IPR011006 CheY-like superfamily YPZ3_2821 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2821 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB YPZ3_2822 IPR026843 Nuclease SbcCD subunit D, C-terminal domain YPZ3_2822 IPR004593 Nuclease SbcCD subunit D YPZ3_2822 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain YPZ3_2822 IPR029052 Metallo-dependent phosphatase-like YPZ3_2822 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPZ3_2823 IPR038729 Rad50/SbcC-type AAA domain YPZ3_2823 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2823 IPR004592 Nuclease SbcC, gammaproteobacteria type YPZ3_2824 IPR000600 ROK family YPZ3_2825 IPR007476 Putative exonuclease, RdgC YPZ3_2826 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2826 IPR031322 Shikimate kinase/gluconokinase YPZ3_2826 IPR000623 Shikimate kinase/Threonine synthase-like 1 YPZ3_2826 IPR027544 Shikimate kinase 2 YPZ3_2826 IPR023000 Shikimate kinase, conserved site YPZ3_2828 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_2828 IPR013216 Methyltransferase type 11 YPZ3_2829 IPR023787 Type III secretion system flagellar brake protein YcgR YPZ3_2829 IPR009875 PilZ domain YPZ3_2829 IPR012349 FMN-binding split barrel YPZ3_2829 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal YPZ3_2830 IPR016162 Aldehyde dehydrogenase, N-terminal YPZ3_2830 IPR016161 Aldehyde/histidinol dehydrogenase YPZ3_2830 IPR015590 Aldehyde dehydrogenase domain YPZ3_2830 IPR000965 GPR domain YPZ3_2830 IPR012134 Glutamate-5-semialdehyde dehydrogenase YPZ3_2830 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site YPZ3_2830 IPR016163 Aldehyde dehydrogenase, C-terminal YPZ3_2831 IPR036393 Acetylglutamate kinase-like superfamily YPZ3_2831 IPR036974 PUA domain superfamily YPZ3_2831 IPR001048 Aspartate/glutamate/uridylate kinase YPZ3_2831 IPR041739 Glutamate-5-kinase domain YPZ3_2831 IPR001057 Glutamate/acetylglutamate kinase YPZ3_2831 IPR011529 Glutamate 5-kinase YPZ3_2831 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase YPZ3_2831 IPR019797 Glutamate 5-kinase, conserved site YPZ3_2831 IPR002478 PUA domain YPZ3_2831 IPR015947 PUA-like superfamily YPZ3_2832 IPR038208 Sigma factor-binding protein Crl superfamily YPZ3_2832 IPR009986 Sigma factor-binding transcriptional regulator Crl YPZ3_2834 IPR023747 Xanthine-guanine phosphoribosyltransferase YPZ3_2834 IPR029057 Phosphoribosyltransferase-like YPZ3_2834 IPR000836 Phosphoribosyltransferase domain YPZ3_2837 IPR001160 Peptidase M20C, Xaa-His dipeptidase YPZ3_2837 IPR011650 Peptidase M20, dimerisation domain YPZ3_2837 IPR002933 Peptidase M20 YPZ3_2838 IPR024728 DNA polymerase type-Y, HhH motif YPZ3_2838 IPR001126 UmuC domain YPZ3_2838 IPR022880 DNA polymerase IV YPZ3_2838 IPR017961 DNA polymerase, Y-family, little finger domain YPZ3_2838 IPR036775 DNA polymerase, Y-family, little finger domain superfamily YPZ3_2839 IPR030395 Glycerophosphodiester phosphodiesterase domain YPZ3_2839 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPZ3_2840 IPR003374 ApbE-like superfamily YPZ3_2840 IPR024932 Flavin transferase ApbE YPZ3_2840 IPR042159 Flavin-trafficking protein ApbE YPZ3_2841 IPR017938 Riboflavin synthase-like beta-barrel YPZ3_2841 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPZ3_2841 IPR012675 Beta-grasp domain superfamily YPZ3_2841 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPZ3_2841 IPR017927 FAD-binding domain, ferredoxin reductase-type YPZ3_2841 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPZ3_2841 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPZ3_2841 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F YPZ3_2841 IPR036010 2Fe-2S ferredoxin-like superfamily YPZ3_2841 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPZ3_2842 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E YPZ3_2842 IPR003667 NqrDE/RnfAE YPZ3_2843 IPR003667 NqrDE/RnfAE YPZ3_2843 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D YPZ3_2844 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C YPZ3_2844 IPR007329 FMN-binding YPZ3_2845 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B YPZ3_2845 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD YPZ3_2846 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A YPZ3_2846 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain YPZ3_2847 IPR038063 L,D-transpeptidase catalytic domain-like YPZ3_2847 IPR005490 L,D-transpeptidase catalytic domain YPZ3_2848 IPR029055 Nucleophile aminohydrolases, N-terminal YPZ3_2848 IPR017932 Glutamine amidotransferase type 2 domain YPZ3_2848 IPR026869 Putative glutamine amidotransferase type 2 YPZ3_2849 IPR035461 GmhA/DiaA YPZ3_2849 IPR001347 Sugar isomerase (SIS) YPZ3_2849 IPR004515 Phosphoheptose isomerase YPZ3_2850 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal YPZ3_2850 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal YPZ3_2850 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type YPZ3_2850 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily YPZ3_2850 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily YPZ3_2850 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal YPZ3_2852 IPR040542 HMW1 domain 2 YPZ3_2852 IPR041109 HMW1C N-terminal YPZ3_2853 IPR011050 Pectin lyase fold/virulence factor YPZ3_2853 IPR012334 Pectin lyase fold YPZ3_2853 IPR008638 Filamentous haemagglutinin, N-terminal YPZ3_2854 IPR005565 Haemolysin activator HlyB, C-terminal YPZ3_2854 IPR013686 Polypeptide-transport-associated, ShlB-type YPZ3_2854 IPR034746 POTRA domain YPZ3_2855 IPR036264 Bacterial exopeptidase dimerisation domain YPZ3_2855 IPR002933 Peptidase M20 YPZ3_2855 IPR010158 Amidase, carbamoylase-type YPZ3_2855 IPR011650 Peptidase M20, dimerisation domain YPZ3_2856 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_2856 IPR000192 Aminotransferase class V domain YPZ3_2856 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_2856 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPZ3_2856 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_2856 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase YPZ3_2857 IPR012337 Ribonuclease H-like superfamily YPZ3_2857 IPR017894 HTH domain, IS21 transposase-type YPZ3_2857 IPR006120 Resolvase, HTH domain YPZ3_2857 IPR001584 Integrase, catalytic core YPZ3_2857 IPR036397 Ribonuclease H superfamily YPZ3_2858 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_2858 IPR001270 ClpA/B family YPZ3_2858 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2858 IPR002611 IstB-like ATP-binding protein YPZ3_2858 IPR003593 AAA+ ATPase domain YPZ3_2859 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_2859 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_2859 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPZ3_2859 IPR000192 Aminotransferase class V domain YPZ3_2859 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_2859 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase YPZ3_2860 IPR017871 ABC transporter, conserved site YPZ3_2860 IPR003439 ABC transporter-like YPZ3_2860 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPZ3_2860 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2860 IPR003593 AAA+ ATPase domain YPZ3_2862 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPZ3_2862 IPR035906 MetI-like superfamily YPZ3_2862 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_2863 IPR018313 Solute-binding protein family 3, conserved site YPZ3_2863 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPZ3_2863 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPZ3_2863 IPR001320 Ionotropic glutamate receptor YPZ3_2865 IPR000120 Amidase YPZ3_2865 IPR023631 Amidase signature domain YPZ3_2865 IPR036928 Amidase signature (AS) superfamily YPZ3_2865 IPR014087 1-carboxybiuret hydrolase, AtzE subunit YPZ3_2867 IPR036259 MFS transporter superfamily YPZ3_2867 IPR011701 Major facilitator superfamily YPZ3_2867 IPR020846 Major facilitator superfamily domain YPZ3_2868 IPR011606 Branched-chain amino acid transport, permease YPZ3_2869 IPR008407 Branched-chain amino acid transport, AzlD YPZ3_2870 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_2870 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2870 IPR023187 Transcriptional regulator MarR-type, conserved site YPZ3_2870 IPR000835 MarR-type HTH domain YPZ3_2871 IPR005694 Efflux pump membrane protein YPZ3_2871 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPZ3_2872 IPR036259 MFS transporter superfamily YPZ3_2872 IPR004638 Drug resistance transporter EmrB-like YPZ3_2872 IPR020846 Major facilitator superfamily domain YPZ3_2872 IPR011701 Major facilitator superfamily YPZ3_2873 IPR013123 RNA 2-O ribose methyltransferase, substrate binding YPZ3_2873 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted YPZ3_2873 IPR029028 Alpha/beta knot methyltransferases YPZ3_2873 IPR029064 50S ribosomal protein L30e-like YPZ3_2873 IPR004441 RNA methyltransferase TrmH family YPZ3_2873 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPZ3_2873 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPZ3_2874 IPR013766 Thioredoxin domain YPZ3_2874 IPR017937 Thioredoxin, conserved site YPZ3_2874 IPR036249 Thioredoxin-like superfamily YPZ3_2874 IPR005746 Thioredoxin YPZ3_2876 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain YPZ3_2876 IPR016181 Acyl-CoA N-acyltransferase YPZ3_2876 IPR016102 Succinyl-CoA synthetase-like YPZ3_2876 IPR000182 GNAT domain YPZ3_2876 IPR003781 CoA-binding YPZ3_2876 IPR013815 ATP-grasp fold, subdomain 1 YPZ3_2876 IPR011761 ATP-grasp fold YPZ3_2876 IPR036291 NAD(P)-binding domain superfamily YPZ3_2877 IPR016270 CDP-alcohol phosphatidyltransferase class-II family YPZ3_2877 IPR025202 Phospholipase D-like domain YPZ3_2877 IPR001736 Phospholipase D/Transphosphatidylase YPZ3_2878 IPR018736 Protein of unknown function DUF2279, periplasmic lipoprotein YPZ3_2878 IPR017028 Uncharacterised conserved protein UCP034456 YPZ3_2880 IPR004176 Clp, N-terminal YPZ3_2880 IPR036628 Clp, N-terminal domain superfamily YPZ3_2880 IPR019489 Clp ATPase, C-terminal YPZ3_2880 IPR041546 ClpA/ClpB, AAA lid domain YPZ3_2880 IPR001270 ClpA/B family YPZ3_2880 IPR018368 ClpA/B, conserved site 1 YPZ3_2880 IPR017730 Chaperonin ClpB YPZ3_2880 IPR003959 ATPase, AAA-type, core YPZ3_2880 IPR003593 AAA+ ATPase domain YPZ3_2880 IPR028299 ClpA/B, conserved site 2 YPZ3_2880 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2882 IPR036986 RNA-binding S4 domain superfamily YPZ3_2882 IPR002942 RNA-binding S4 domain YPZ3_2882 IPR006145 Pseudouridine synthase, RsuA/RluA YPZ3_2882 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPZ3_2882 IPR006225 Pseudouridine synthase, RluC/RluD YPZ3_2882 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPZ3_2883 IPR017689 Outer membrane protein assembly factor BamD YPZ3_2883 IPR011990 Tetratricopeptide-like helical domain superfamily YPZ3_2883 IPR039565 Outer membrane lipoprotein BamD-like YPZ3_2884 IPR003489 Ribosome hibernation promoting factor/RaiA YPZ3_2884 IPR036567 Ribosome hibernation promotion factor-like YPZ3_2885 IPR002686 Transposase IS200-like YPZ3_2885 IPR036515 Transposase IS200-like superfamily YPZ3_2886 IPR010952 Chorismate mutase, gammaproteobacteria YPZ3_2886 IPR036979 Chorismate mutase domain superfamily YPZ3_2886 IPR036263 Chorismate mutase type II superfamily YPZ3_2886 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase YPZ3_2886 IPR002912 ACT domain YPZ3_2886 IPR018528 Prephenate dehydratase, conserved site YPZ3_2886 IPR001086 Prephenate dehydratase YPZ3_2886 IPR002701 Chorismate mutase II, prokaryotic-type YPZ3_2887 IPR017894 HTH domain, IS21 transposase-type YPZ3_2887 IPR001584 Integrase, catalytic core YPZ3_2887 IPR036397 Ribonuclease H superfamily YPZ3_2887 IPR012337 Ribonuclease H-like superfamily YPZ3_2887 IPR006120 Resolvase, HTH domain YPZ3_2888 IPR002611 IstB-like ATP-binding protein YPZ3_2888 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_2888 IPR003593 AAA+ ATPase domain YPZ3_2888 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2888 IPR001270 ClpA/B family YPZ3_2889 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase YPZ3_2889 IPR036979 Chorismate mutase domain superfamily YPZ3_2889 IPR036263 Chorismate mutase type II superfamily YPZ3_2889 IPR002701 Chorismate mutase II, prokaryotic-type YPZ3_2889 IPR010952 Chorismate mutase, gammaproteobacteria YPZ3_2889 IPR001086 Prephenate dehydratase YPZ3_2889 IPR018528 Prephenate dehydratase, conserved site YPZ3_2889 IPR002912 ACT domain YPZ3_2890 IPR036291 NAD(P)-binding domain superfamily YPZ3_2890 IPR011277 Chorismate mutase, T-protein YPZ3_2890 IPR002701 Chorismate mutase II, prokaryotic-type YPZ3_2890 IPR036979 Chorismate mutase domain superfamily YPZ3_2890 IPR036263 Chorismate mutase type II superfamily YPZ3_2890 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein YPZ3_2890 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPZ3_2890 IPR003099 Prephenate dehydrogenase YPZ3_2891 IPR006219 DHAP synthase, class 1 YPZ3_2891 IPR006218 DAHP synthetase I/KDSA YPZ3_2891 IPR013785 Aldolase-type TIM barrel YPZ3_2892 IPR007492 LytTR DNA-binding domain YPZ3_2892 IPR001789 Signal transduction response regulator, receiver domain YPZ3_2892 IPR011006 CheY-like superfamily YPZ3_2893 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPZ3_2894 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPZ3_2895 IPR007433 Protein of unknown function DUF481 YPZ3_2897 IPR008991 Translation protein SH3-like domain superfamily YPZ3_2897 IPR018257 Ribosomal protein L19, conserved site YPZ3_2897 IPR001857 Ribosomal protein L19 YPZ3_2897 IPR038657 Ribosomal protein L19 superfamily YPZ3_2898 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal YPZ3_2898 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria YPZ3_2898 IPR029028 Alpha/beta knot methyltransferases YPZ3_2898 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain YPZ3_2898 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPZ3_2899 IPR036976 RimM, N-terminal domain superfamily YPZ3_2899 IPR009000 Translation protein, beta-barrel domain superfamily YPZ3_2899 IPR011961 16S rRNA processing protein RimM YPZ3_2899 IPR002676 RimM, N-terminal YPZ3_2899 IPR027275 PRC-barrel domain YPZ3_2899 IPR011033 PRC-barrel-like superfamily YPZ3_2900 IPR004780 Signal recognition particle protein YPZ3_2900 IPR022941 Signal recognition particle, SRP54 subunit YPZ3_2900 IPR003593 AAA+ ATPase domain YPZ3_2900 IPR013822 Signal recognition particle SRP54, helical bundle YPZ3_2900 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily YPZ3_2900 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2900 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily YPZ3_2900 IPR004125 Signal recognition particle, SRP54 subunit, M-domain YPZ3_2900 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YPZ3_2901 IPR002541 Cytochrome c assembly protein YPZ3_2902 IPR005170 Transporter-associated domain YPZ3_2902 IPR016169 FAD-binding, type PCMH, subdomain 2 YPZ3_2902 IPR036318 FAD-binding, type PCMH-like superfamily YPZ3_2902 IPR000644 CBS domain YPZ3_2902 IPR002550 CNNM, transmembrane domain YPZ3_2904 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPZ3_2904 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily YPZ3_2904 IPR003815 S-ribosylhomocysteinase (LuxS) YPZ3_2905 IPR007370 Glutamate--cysteine ligase YPZ3_2905 IPR006334 Glutamate--cysteine ligase, monofunctional YPZ3_2905 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YPZ3_2906 IPR032816 SNARE associated Golgi protein YPZ3_2907 IPR036412 HAD-like superfamily YPZ3_2907 IPR041492 Haloacid dehalogenase-like hydrolase YPZ3_2907 IPR023214 HAD superfamily YPZ3_2907 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPZ3_2907 IPR006439 HAD hydrolase, subfamily IA YPZ3_2907 IPR010976 Beta-phosphoglucomutase hydrolase YPZ3_2908 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal YPZ3_2908 IPR002318 Alanine-tRNA ligase, class IIc YPZ3_2908 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily YPZ3_2908 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain YPZ3_2908 IPR003156 DHHA1 domain YPZ3_2908 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily YPZ3_2908 IPR009000 Translation protein, beta-barrel domain superfamily YPZ3_2908 IPR012947 Threonyl/alanyl tRNA synthetase, SAD YPZ3_2908 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria YPZ3_2909 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2909 IPR003783 Regulatory protein RecX YPZ3_2910 IPR003593 AAA+ ATPase domain YPZ3_2910 IPR013765 DNA recombination and repair protein RecA YPZ3_2910 IPR020584 DNA recombination/repair protein RecA, conserved site YPZ3_2910 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2910 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface YPZ3_2910 IPR023400 DNA recombination and repair protein RecA, C-terminal YPZ3_2910 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain YPZ3_2911 IPR008136 CinA, C-terminal YPZ3_2911 IPR036653 CinA-like, C-terminal YPZ3_2912 IPR011701 Major facilitator superfamily YPZ3_2912 IPR036259 MFS transporter superfamily YPZ3_2912 IPR023745 MSF-type transporter, YcaD YPZ3_2912 IPR020846 Major facilitator superfamily domain YPZ3_2915 IPR000577 Carbohydrate kinase, FGGY YPZ3_2915 IPR042016 Apulose kinase YPZ3_2915 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPZ3_2915 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPZ3_2916 IPR029061 Thiamin diphosphate-binding fold YPZ3_2916 IPR033248 Transketolase, C-terminal domain YPZ3_2916 IPR005475 Transketolase-like, pyrimidine-binding domain YPZ3_2916 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPZ3_2917 IPR005474 Transketolase, N-terminal YPZ3_2917 IPR029061 Thiamin diphosphate-binding fold YPZ3_2918 IPR001851 ABC transporter, permease YPZ3_2919 IPR003439 ABC transporter-like YPZ3_2919 IPR017871 ABC transporter, conserved site YPZ3_2919 IPR015861 ABC transporter, ribose import, RbsA YPZ3_2919 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2919 IPR003593 AAA+ ATPase domain YPZ3_2922 IPR019793 Peroxidases heam-ligand binding site YPZ3_2922 IPR019794 Peroxidase, active site YPZ3_2922 IPR010255 Haem peroxidase superfamily YPZ3_2922 IPR002016 Haem peroxidase YPZ3_2922 IPR000763 Catalase-peroxidase haem YPZ3_2923 IPR010980 Cytochrome c/b562 YPZ3_2923 IPR009155 Cytochrome b562 YPZ3_2924 IPR026269 Tat proofreading chaperone DmsD-type YPZ3_2924 IPR028611 Tat proofreading chaperone DmsD YPZ3_2924 IPR020945 DMSO/Nitrate reductase chaperone YPZ3_2924 IPR036411 TorD-like superfamily YPZ3_2925 IPR007059 DMSO reductase anchor subunit (DmsC) YPZ3_2926 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_2926 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPZ3_2926 IPR014297 Dimethylsulphoxide reductase, chain B YPZ3_2927 IPR006311 Twin-arginine translocation pathway, signal sequence YPZ3_2927 IPR006656 Molybdopterin oxidoreductase YPZ3_2927 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPZ3_2927 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE YPZ3_2927 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPZ3_2927 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPZ3_2927 IPR009010 Aspartate decarboxylase-like domain superfamily YPZ3_2927 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPZ3_2927 IPR006657 Molybdopterin dinucleotide-binding domain YPZ3_2928 IPR004661 L-ribulose-5-phosphate 4-epimerase YPZ3_2928 IPR033748 L-ribulose-5-phosphate 4-epimerase AraD YPZ3_2928 IPR001303 Class II aldolase/adducin N-terminal YPZ3_2928 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPZ3_2929 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_2929 IPR037171 NagB/RpiA transferase-like YPZ3_2929 IPR001034 DeoR-type HTH domain YPZ3_2929 IPR014036 DeoR C-terminal sensor domain YPZ3_2929 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2929 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPZ3_2931 IPR036515 Transposase IS200-like superfamily YPZ3_2931 IPR002686 Transposase IS200-like YPZ3_2932 IPR003593 AAA+ ATPase domain YPZ3_2932 IPR003439 ABC transporter-like YPZ3_2932 IPR017871 ABC transporter, conserved site YPZ3_2932 IPR015861 ABC transporter, ribose import, RbsA YPZ3_2932 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2933 IPR001851 ABC transporter, permease YPZ3_2934 IPR001851 ABC transporter, permease YPZ3_2935 IPR013022 Xylose isomerase-like, TIM barrel domain YPZ3_2935 IPR004560 L-ribulose-5-phosphate 3-epimerase YPZ3_2935 IPR001719 AP endonuclease 2 YPZ3_2935 IPR036237 Xylose isomerase-like superfamily YPZ3_2936 IPR000577 Carbohydrate kinase, FGGY YPZ3_2936 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPZ3_2936 IPR018483 Carbohydrate kinase, FGGY, conserved site YPZ3_2936 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPZ3_2937 IPR020557 Fumarate lyase, conserved site YPZ3_2937 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain YPZ3_2937 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain YPZ3_2937 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily YPZ3_2937 IPR011167 Iron-dependent fumarate hydratase YPZ3_2938 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 YPZ3_2938 IPR001714 Peptidase M24, methionine aminopeptidase YPZ3_2938 IPR000994 Peptidase M24 YPZ3_2938 IPR036005 Creatinase/aminopeptidase-like YPZ3_2941 IPR039426 Vitamin B12 transporter BtuB-like YPZ3_2941 IPR010917 TonB-dependent receptor, conserved site YPZ3_2941 IPR012910 TonB-dependent receptor, plug domain YPZ3_2941 IPR037066 TonB-dependent receptor, plug domain superfamily YPZ3_2941 IPR000531 TonB-dependent receptor-like, beta-barrel YPZ3_2941 IPR010916 TonB box, conserved site YPZ3_2941 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPZ3_2942 IPR009056 Cytochrome c-like domain YPZ3_2942 IPR004852 Di-haem cytochrome c peroxidase YPZ3_2942 IPR036909 Cytochrome c-like domain superfamily YPZ3_2942 IPR025992 Haem-binding domain YPZ3_2943 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPZ3_2943 IPR018313 Solute-binding protein family 3, conserved site YPZ3_2943 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPZ3_2944 IPR018334 ArsR-type transcription regulator, HTH motif YPZ3_2944 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2944 IPR001845 HTH ArsR-type DNA-binding domain YPZ3_2944 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_2944 IPR011991 ArsR-like helix-turn-helix domain YPZ3_2945 IPR000802 Arsenical pump membrane protein, ArsB YPZ3_2946 IPR011991 ArsR-like helix-turn-helix domain YPZ3_2946 IPR025246 Transposase IS30-like HTH domain YPZ3_2946 IPR037171 NagB/RpiA transferase-like YPZ3_2946 IPR007324 Sugar-binding domain, putative YPZ3_2946 IPR009057 Homeobox-like domain superfamily YPZ3_2947 IPR007324 Sugar-binding domain, putative YPZ3_2947 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2947 IPR037171 NagB/RpiA transferase-like YPZ3_2948 IPR036117 DhaL domain superfamily YPZ3_2948 IPR012737 Dihydroxyacetone kinase, subunit L YPZ3_2948 IPR004007 DhaL domain YPZ3_2949 IPR004006 DhaK domain YPZ3_2950 IPR036291 NAD(P)-binding domain superfamily YPZ3_2950 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPZ3_2950 IPR002347 Short-chain dehydrogenase/reductase SDR YPZ3_2951 IPR013154 Alcohol dehydrogenase, N-terminal YPZ3_2951 IPR011032 GroES-like superfamily YPZ3_2951 IPR036291 NAD(P)-binding domain superfamily YPZ3_2951 IPR020843 Polyketide synthase, enoylreductase domain YPZ3_2951 IPR013149 Alcohol dehydrogenase, C-terminal YPZ3_2952 IPR004785 Ribose 5-phosphate isomerase B YPZ3_2952 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family YPZ3_2952 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily YPZ3_2953 IPR007861 DNA mismatch repair protein MutS, clamp YPZ3_2953 IPR000432 DNA mismatch repair protein MutS, C-terminal YPZ3_2953 IPR036678 MutS, connector domain superfamily YPZ3_2953 IPR007696 DNA mismatch repair protein MutS, core YPZ3_2953 IPR016151 DNA mismatch repair protein MutS, N-terminal YPZ3_2953 IPR036187 DNA mismatch repair protein MutS, core domain superfamily YPZ3_2953 IPR007860 DNA mismatch repair protein MutS, connector domain YPZ3_2953 IPR017261 DNA mismatch repair protein MutS/MSH YPZ3_2953 IPR007695 DNA mismatch repair protein MutS-like, N-terminal YPZ3_2953 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2953 IPR005748 DNA mismatch repair protein MutS YPZ3_2954 IPR007627 RNA polymerase sigma-70 region 2 YPZ3_2954 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_2954 IPR012761 RNA polymerase sigma factor RpoS YPZ3_2954 IPR013324 RNA polymerase sigma factor, region 3/4-like YPZ3_2954 IPR013325 RNA polymerase sigma factor, region 2 YPZ3_2954 IPR007630 RNA polymerase sigma-70 region 4 YPZ3_2954 IPR009042 RNA polymerase sigma-70 region 1.2 YPZ3_2954 IPR007624 RNA polymerase sigma-70 region 3 YPZ3_2954 IPR000943 RNA polymerase sigma-70 YPZ3_2954 IPR014284 RNA polymerase sigma-70 like domain YPZ3_2955 IPR016047 Peptidase M23 YPZ3_2955 IPR036779 LysM domain superfamily YPZ3_2955 IPR018392 LysM domain YPZ3_2955 IPR011055 Duplicated hybrid motif YPZ3_2956 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_2956 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase YPZ3_2957 IPR036523 SurE-like phosphatase/nucleotidase superfamily YPZ3_2957 IPR002828 Survival protein SurE-like phosphatase/nucleotidase YPZ3_2957 IPR030048 Survival protein SurE YPZ3_2958 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPZ3_2958 IPR001656 Pseudouridine synthase, TruD YPZ3_2958 IPR042214 Pseudouridine synthase, TruD, catalytic domain YPZ3_2958 IPR011760 Pseudouridine synthase, TruD, insertion domain YPZ3_2958 IPR020119 Pseudouridine synthase TruD, conserved site YPZ3_2959 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily YPZ3_2959 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site YPZ3_2959 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YPZ3_2960 IPR029044 Nucleotide-diphospho-sugar transferases YPZ3_2960 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site YPZ3_2960 IPR034683 Cytidylyltransferase IspD/TarI YPZ3_2960 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPZ3_2961 IPR023081 Cell division protein FtsB YPZ3_2961 IPR007060 Septum formation initiator FtsL/DivIC YPZ3_2962 IPR022721 Protein of unknown function DUF3561 YPZ3_2963 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2963 IPR002891 Adenylyl-sulfate kinase YPZ3_2964 IPR031157 Tr-type G domain, conserved site YPZ3_2964 IPR041757 Sulfate adenylyltransferase subunit CysN, GTP-binding domain YPZ3_2964 IPR005225 Small GTP-binding protein domain YPZ3_2964 IPR000795 Transcription factor, GTP-binding domain YPZ3_2964 IPR009000 Translation protein, beta-barrel domain superfamily YPZ3_2964 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPZ3_2964 IPR011779 Sulphate adenylyltransferase, large subunit YPZ3_2964 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2965 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2965 IPR011784 Sulphate adenylyltransferase, small subunit YPZ3_2965 IPR002500 Phosphoadenosine phosphosulphate reductase YPZ3_2966 IPR006367 Sirohaem synthase, N-terminal YPZ3_2966 IPR019478 Sirohaem synthase, dimerisation domain YPZ3_2966 IPR028281 Siroheme synthase, central domain YPZ3_2966 IPR012409 Sirohaem synthase YPZ3_2966 IPR037115 Sirohaem synthase, dimerisation domain superfamily YPZ3_2966 IPR006366 Uroporphyrin-III C-methyltransferase YPZ3_2966 IPR014776 Tetrapyrrole methylase, subdomain 2 YPZ3_2966 IPR000878 Tetrapyrrole methylase YPZ3_2966 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site YPZ3_2966 IPR036291 NAD(P)-binding domain superfamily YPZ3_2966 IPR014777 Tetrapyrrole methylase, subdomain 1 YPZ3_2966 IPR035996 Tetrapyrrole methylase superfamily YPZ3_2968 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase YPZ3_2968 IPR002500 Phosphoadenosine phosphosulphate reductase YPZ3_2968 IPR011800 Phosphoadenosine phosphosulphate reductase CysH YPZ3_2968 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2969 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit YPZ3_2969 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain YPZ3_2969 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily YPZ3_2969 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site YPZ3_2969 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain YPZ3_2970 IPR029039 Flavoprotein-like superfamily YPZ3_2970 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPZ3_2970 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily YPZ3_2970 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPZ3_2970 IPR017938 Riboflavin synthase-like beta-barrel YPZ3_2970 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPZ3_2970 IPR008254 Flavodoxin/nitric oxide synthase YPZ3_2970 IPR017927 FAD-binding domain, ferredoxin reductase-type YPZ3_2970 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria YPZ3_2970 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding YPZ3_2970 IPR001094 Flavodoxin-like YPZ3_2970 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain YPZ3_2971 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily YPZ3_2971 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family YPZ3_2972 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria YPZ3_2972 IPR007197 Radical SAM YPZ3_2972 IPR013785 Aldolase-type TIM barrel YPZ3_2972 IPR024924 7-carboxy-7-deazaguanine synthase-like YPZ3_2973 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily YPZ3_2973 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone YPZ3_2973 IPR018152 Superoxide dismutase, copper/zinc, binding site YPZ3_2973 IPR001424 Superoxide dismutase, copper/zinc binding domain YPZ3_2974 IPR020811 Enolase, N-terminal YPZ3_2974 IPR029017 Enolase-like, N-terminal YPZ3_2974 IPR000941 Enolase YPZ3_2974 IPR036849 Enolase-like, C-terminal domain superfamily YPZ3_2974 IPR020809 Enolase, conserved site YPZ3_2974 IPR020810 Enolase, C-terminal TIM barrel domain YPZ3_2975 IPR017926 Glutamine amidotransferase YPZ3_2975 IPR033828 CTP synthase GATase domain YPZ3_2975 IPR017456 CTP synthase, N-terminal YPZ3_2975 IPR004468 CTP synthase YPZ3_2975 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2975 IPR029062 Class I glutamine amidotransferase-like YPZ3_2976 IPR011551 NTP pyrophosphohydrolase MazG YPZ3_2976 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core YPZ3_2977 IPR033655 RelA, TGS domain YPZ3_2977 IPR002912 ACT domain YPZ3_2977 IPR003607 HD/PDEase domain YPZ3_2977 IPR004811 RelA/SpoT family YPZ3_2977 IPR007685 RelA/SpoT YPZ3_2977 IPR012675 Beta-grasp domain superfamily YPZ3_2977 IPR012676 TGS-like YPZ3_2977 IPR004095 TGS YPZ3_2978 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_2978 IPR019247 Histidine kinase BarA, N-terminal YPZ3_2978 IPR036641 HPT domain superfamily YPZ3_2978 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_2978 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPZ3_2978 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_2978 IPR001789 Signal transduction response regulator, receiver domain YPZ3_2978 IPR005467 Histidine kinase domain YPZ3_2978 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_2978 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_2978 IPR011006 CheY-like superfamily YPZ3_2978 IPR003660 HAMP domain YPZ3_2979 IPR001940 Peptidase S1C YPZ3_2979 IPR011782 Peptidase S1C, Do YPZ3_2979 IPR036034 PDZ superfamily YPZ3_2979 IPR001478 PDZ domain YPZ3_2979 IPR009003 Peptidase S1, PA clan YPZ3_2980 IPR006674 HD domain YPZ3_2980 IPR026875 Phosphohydrolase-associated domain YPZ3_2980 IPR006261 dNTP triphosphohydrolase YPZ3_2980 IPR003607 HD/PDEase domain YPZ3_2980 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily YPZ3_2980 IPR020779 dNTP triphosphohydrolase, type 1 YPZ3_2981 IPR010049 MTA/SAH nucleosidase YPZ3_2981 IPR000845 Nucleoside phosphorylase domain YPZ3_2981 IPR035994 Nucleoside phosphorylase superfamily YPZ3_2982 IPR002491 ABC transporter periplasmic binding domain YPZ3_2982 IPR023544 ABC transporter, vitamin B12-binding protein YPZ3_2983 IPR005115 Uncharacterised domain UPF0126 YPZ3_2984 IPR035903 HesB-like domain superfamily YPZ3_2984 IPR023063 FeS cluster insertion protein ErpA YPZ3_2984 IPR017870 FeS cluster insertion, C-terminal, conserved site YPZ3_2984 IPR016092 FeS cluster insertion protein YPZ3_2984 IPR000361 FeS cluster biogenesis YPZ3_2985 IPR001807 Chloride channel, voltage gated YPZ3_2985 IPR014743 Chloride channel, core YPZ3_2985 IPR023861 Chloride channel, ClcA YPZ3_2986 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_2986 IPR005814 Aminotransferase class-III YPZ3_2986 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase YPZ3_2986 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_2986 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_2987 IPR037294 ABC transporter, BtuC-like YPZ3_2987 IPR000522 ABC transporter, permease protein, BtuC-like YPZ3_2988 IPR002491 ABC transporter periplasmic binding domain YPZ3_2989 IPR003593 AAA+ ATPase domain YPZ3_2989 IPR003439 ABC transporter-like YPZ3_2989 IPR017871 ABC transporter, conserved site YPZ3_2989 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2990 IPR028166 Bifunctional transglycosylase second domain YPZ3_2990 IPR001460 Penicillin-binding protein, transpeptidase YPZ3_2990 IPR036950 Penicillin binding protein transglycosylase domain YPZ3_2990 IPR011813 Penicillin-binding protein 1B YPZ3_2990 IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain YPZ3_2990 IPR023346 Lysozyme-like domain superfamily YPZ3_2990 IPR012338 Beta-lactamase/transpeptidase-like YPZ3_2990 IPR001264 Glycosyl transferase, family 51 YPZ3_2991 IPR001650 Helicase, C-terminal YPZ3_2991 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_2991 IPR011545 DEAD/DEAH box helicase domain YPZ3_2991 IPR007502 Helicase-associated domain YPZ3_2991 IPR010225 ATP-dependent helicase HrpB YPZ3_2991 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_2991 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal YPZ3_2992 IPR004175 RNA 2',3'-cyclic phosphodiesterase YPZ3_2992 IPR014051 Phosphoesterase, HXTX YPZ3_2992 IPR009097 Cyclic phosphodiesterase YPZ3_2993 IPR041465 SfsA, N-terminal OB domain YPZ3_2993 IPR040452 Sugar fermentation stimulation protein, C-terminal YPZ3_2993 IPR005224 Sugar fermentation stimulation protein YPZ3_2994 IPR020458 Zinc finger, DksA/TraR C4-type conserved site YPZ3_2994 IPR012784 RNA polymerase-binding transcription factor DksA YPZ3_2994 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria YPZ3_2994 IPR000962 Zinc finger, DksA/TraR C4-type YPZ3_2994 IPR037187 DksA, N-terminal domain superfamily YPZ3_2995 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2995 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPZ3_2995 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPZ3_2995 IPR022380 Glutamyl-Q tRNA(Asp) synthetase YPZ3_2996 IPR010206 Poly(A) polymerase I YPZ3_2996 IPR025866 Polymerase A arginine-rich C-terminal domain YPZ3_2996 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain YPZ3_2996 IPR002646 Poly A polymerase, head domain YPZ3_2997 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YPZ3_2997 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily YPZ3_2998 IPR003700 Ketopantoate hydroxymethyltransferase YPZ3_2998 IPR040442 Pyruvate kinase-like domain superfamily YPZ3_2998 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPZ3_2999 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_2999 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain YPZ3_2999 IPR003721 Pantoate-beta-alanine ligase YPZ3_3000 IPR009010 Aspartate decarboxylase-like domain superfamily YPZ3_3000 IPR003190 Aspartate decarboxylase YPZ3_3001 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPZ3_3001 IPR002509 NodB homology domain YPZ3_3002 IPR013525 ABC-2 type transporter YPZ3_3002 IPR000412 ABC-2 transporter YPZ3_3003 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3003 IPR017871 ABC transporter, conserved site YPZ3_3003 IPR003439 ABC transporter-like YPZ3_3003 IPR003593 AAA+ ATPase domain YPZ3_3004 IPR001765 Carbonic anhydrase YPZ3_3004 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site YPZ3_3004 IPR036874 Carbonic anhydrase superfamily YPZ3_3005 IPR000836 Phosphoribosyltransferase domain YPZ3_3005 IPR029057 Phosphoribosyltransferase-like YPZ3_3005 IPR005904 Hypoxanthine phosphoribosyl transferase YPZ3_3006 IPR006311 Twin-arginine translocation pathway, signal sequence YPZ3_3006 IPR011706 Multicopper oxidase, type 2 YPZ3_3006 IPR011707 Multicopper oxidase, type 3 YPZ3_3006 IPR002355 Multicopper oxidase, copper-binding site YPZ3_3006 IPR008972 Cupredoxin YPZ3_3006 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPZ3_3006 IPR001117 Multicopper oxidase, type 1 YPZ3_3007 IPR038432 PulS/OutS-like superfamily YPZ3_3007 IPR019114 Chaperone lipoprotein, PulS/OutS-like YPZ3_3008 IPR037163 Spermidine synthase, tetramerisation domain superfamily YPZ3_3008 IPR035246 Spermidine synthase, tetramerisation domain YPZ3_3008 IPR001045 Spermidine/spermine synthases YPZ3_3008 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_3008 IPR030373 Polyamine biosynthesis domain, conserved site YPZ3_3008 IPR030374 Polyamine biosynthesis domain YPZ3_3009 IPR016067 S-adenosylmethionine decarboxylase, core YPZ3_3009 IPR009165 S-adenosylmethionine decarboxylase, bacterial YPZ3_3009 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic YPZ3_3010 IPR000620 EamA domain YPZ3_3011 IPR008249 Uncharacterised protein family UPF0231 YPZ3_3012 IPR015932 Aconitase, domain 2 YPZ3_3012 IPR015929 Aconitase B, swivel YPZ3_3012 IPR036288 Aconitase B, HEAT-like domain superfamily YPZ3_3012 IPR015933 Aconitase B, HEAT-like domain YPZ3_3012 IPR004406 Aconitase B YPZ3_3012 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPZ3_3012 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain YPZ3_3012 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPZ3_3012 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPZ3_3012 IPR036008 Aconitase, iron-sulfur domain YPZ3_3013 IPR036515 Transposase IS200-like superfamily YPZ3_3013 IPR002686 Transposase IS200-like YPZ3_3014 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPZ3_3014 IPR006258 Dihydrolipoamide dehydrogenase YPZ3_3014 IPR023753 FAD/NAD(P)-binding domain YPZ3_3014 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_3014 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YPZ3_3014 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPZ3_3014 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YPZ3_3015 IPR004167 Peripheral subunit-binding domain YPZ3_3015 IPR036625 E3-binding domain superfamily YPZ3_3015 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPZ3_3015 IPR000089 Biotin/lipoyl attachment YPZ3_3015 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex YPZ3_3015 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain YPZ3_3015 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPZ3_3015 IPR011053 Single hybrid motif YPZ3_3016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPZ3_3016 IPR029061 Thiamin diphosphate-binding fold YPZ3_3016 IPR041621 Pyruvate dehydrogenase E1 component, middle domain YPZ3_3016 IPR004660 Pyruvate dehydrogenase E1 component YPZ3_3016 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal YPZ3_3016 IPR005474 Transketolase, N-terminal YPZ3_3017 IPR011711 GntR, C-terminal YPZ3_3017 IPR008920 Transcription regulator FadR/GntR, C-terminal YPZ3_3017 IPR000524 Transcription regulator HTH, GntR YPZ3_3017 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_3017 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_3018 IPR004840 Amino acid permease, conserved site YPZ3_3018 IPR004841 Amino acid permease/ SLC12A domain YPZ3_3019 IPR031347 Protein AmpE YPZ3_3020 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily YPZ3_3020 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPZ3_3021 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD YPZ3_3021 IPR013785 Aldolase-type TIM barrel YPZ3_3021 IPR004393 Nicotinate-nucleotide pyrophosphorylase YPZ3_3021 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal YPZ3_3021 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal YPZ3_3021 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily YPZ3_3021 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal YPZ3_3022 IPR012902 Prokaryotic N-terminal methylation site YPZ3_3023 IPR007831 General secretory system II, protein E, N-terminal YPZ3_3023 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3023 IPR001482 Type II/IV secretion system protein YPZ3_3024 IPR042094 Type II secretion system F domain superfamily YPZ3_3024 IPR018076 Type II secretion system F domain YPZ3_3024 IPR001992 Type II secretion system conserved site YPZ3_3024 IPR003004 GspF/PilC family YPZ3_3025 IPR001093 IMP dehydrogenase/GMP reductase YPZ3_3025 IPR013785 Aldolase-type TIM barrel YPZ3_3025 IPR015875 IMP dehydrogenase / GMP reductase, conserved site YPZ3_3025 IPR005993 GMP reductase YPZ3_3026 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3026 IPR001977 Dephospho-CoA kinase YPZ3_3027 IPR036268 ZapD domain superfamily YPZ3_3027 IPR027462 Z ring-associated protein D, C-terminal YPZ3_3027 IPR009777 Cell division protein ZapD YPZ3_3028 IPR002686 Transposase IS200-like YPZ3_3028 IPR036515 Transposase IS200-like superfamily YPZ3_3029 IPR012337 Ribonuclease H-like superfamily YPZ3_3029 IPR001584 Integrase, catalytic core YPZ3_3029 IPR036397 Ribonuclease H superfamily YPZ3_3029 IPR006120 Resolvase, HTH domain YPZ3_3029 IPR017894 HTH domain, IS21 transposase-type YPZ3_3030 IPR003593 AAA+ ATPase domain YPZ3_3030 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_3030 IPR002611 IstB-like ATP-binding protein YPZ3_3030 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3030 IPR001270 ClpA/B family YPZ3_3031 IPR002099 DNA mismatch repair protein family, N-terminal YPZ3_3031 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_3031 IPR042120 MutL, C-terminal domain, dimerisation subdomain YPZ3_3031 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPZ3_3031 IPR013507 DNA mismatch repair protein, S5 domain 2-like YPZ3_3031 IPR020667 DNA mismatch repair protein, MutL YPZ3_3031 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_3031 IPR042121 MutL, C-terminal domain, regulatory subdomain YPZ3_3031 IPR014790 MutL, C-terminal, dimerisation YPZ3_3031 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms YPZ3_3031 IPR014762 DNA mismatch repair, conserved site YPZ3_3031 IPR037198 MutL, C-terminal domain superfamily YPZ3_3033 IPR025166 Integrase, DNA-binding domain YPZ3_3033 IPR010998 Integrase/recombinase, N-terminal YPZ3_3033 IPR038488 Integrase, DNA-binding domain superfamily YPZ3_3033 IPR002104 Integrase, catalytic domain YPZ3_3033 IPR013762 Integrase-like, catalytic domain superfamily YPZ3_3033 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPZ3_3034 IPR030923 LPS export ABC transporter permease LptG YPZ3_3034 IPR005495 Permease LptG/LptF-related YPZ3_3035 IPR005495 Permease LptG/LptF-related YPZ3_3035 IPR030922 LPS export ABC transporter permease LptF YPZ3_3036 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B YPZ3_3036 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal YPZ3_3036 IPR023042 Peptidase M17, leucine aminopeptidase YPZ3_3036 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal YPZ3_3037 IPR036768 DNA polymerase III subunit chi superfamily YPZ3_3037 IPR007459 DNA polymerase III chi subunit, HolC YPZ3_3038 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPZ3_3038 IPR033705 Valyl tRNA synthetase, anticodon-binding domain YPZ3_3038 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm YPZ3_3038 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily YPZ3_3038 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPZ3_3038 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPZ3_3038 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPZ3_3038 IPR002303 Valine-tRNA ligase YPZ3_3038 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm YPZ3_3038 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPZ3_3038 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPZ3_3039 IPR016181 Acyl-CoA N-acyltransferase YPZ3_3039 IPR000182 GNAT domain YPZ3_3040 IPR036701 RraB-like superfamily YPZ3_3040 IPR009671 Regulator of ribonuclease activity B domain YPZ3_3040 IPR016716 Regulator of ribonuclease activity B YPZ3_3041 IPR006130 Aspartate/ornithine carbamoyltransferase YPZ3_3041 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YPZ3_3041 IPR002292 Ornithine/putrescine carbamoyltransferase YPZ3_3041 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily YPZ3_3041 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YPZ3_3041 IPR024904 Ornithine carbamoyltransferase YPZ3_3042 IPR004375 YhcH/YjgK/YiaL family YPZ3_3042 IPR037012 YhcH/YjgK/YiaL superfamily YPZ3_3045 IPR035906 MetI-like superfamily YPZ3_3045 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_3046 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_3046 IPR035906 MetI-like superfamily YPZ3_3046 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPZ3_3047 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3047 IPR017871 ABC transporter, conserved site YPZ3_3047 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPZ3_3047 IPR003439 ABC transporter-like YPZ3_3047 IPR003593 AAA+ ATPase domain YPZ3_3048 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3048 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPZ3_3048 IPR017871 ABC transporter, conserved site YPZ3_3048 IPR003439 ABC transporter-like YPZ3_3048 IPR003593 AAA+ ATPase domain YPZ3_3049 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic YPZ3_3049 IPR001150 Glycine radical domain YPZ3_3049 IPR005144 ATP-cone domain YPZ3_3049 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPZ3_3050 IPR001989 Radical-activating enzyme, conserved site YPZ3_3050 IPR034457 Organic radical-activating enzymes YPZ3_3050 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic YPZ3_3050 IPR013785 Aldolase-type TIM barrel YPZ3_3051 IPR011663 UbiC transcription regulator-associated YPZ3_3051 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_3051 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF YPZ3_3051 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPZ3_3051 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_3051 IPR000524 Transcription regulator HTH, GntR YPZ3_3052 IPR009609 Phosphonate metabolism PhnG YPZ3_3053 IPR038058 PhnH-like superfamily YPZ3_3053 IPR008772 Bacterial phosphonate metabolism, PhnH YPZ3_3054 IPR008773 Phosphonate metabolism protein PhnI YPZ3_3055 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase YPZ3_3056 IPR017871 ABC transporter, conserved site YPZ3_3056 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3056 IPR012700 Phosphonate C-P lyase system, PhnK YPZ3_3056 IPR003439 ABC transporter-like YPZ3_3056 IPR003593 AAA+ ATPase domain YPZ3_3057 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3057 IPR003593 AAA+ ATPase domain YPZ3_3057 IPR003439 ABC transporter-like YPZ3_3057 IPR017871 ABC transporter, conserved site YPZ3_3057 IPR012701 Phosphonate C-P lyase system, PhnL YPZ3_3058 IPR012696 Phosphonate metabolism PhnM YPZ3_3058 IPR032466 Metal-dependent hydrolase YPZ3_3058 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPZ3_3058 IPR013108 Amidohydrolase 3 YPZ3_3059 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3059 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN YPZ3_3059 IPR008144 Guanylate kinase-like domain YPZ3_3059 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YPZ3_3060 IPR001279 Metallo-beta-lactamase YPZ3_3060 IPR035682 Phosphonate metabolism protein, MBL domain YPZ3_3060 IPR017693 Phosphonate metabolism protein PhnP YPZ3_3060 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPZ3_3061 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPZ3_3061 IPR036291 NAD(P)-binding domain superfamily YPZ3_3061 IPR016040 NAD(P)-binding domain YPZ3_3062 IPR012349 FMN-binding split barrel YPZ3_3062 IPR011194 Uncharacterised protein family UPF0306 YPZ3_3064 IPR005116 Transport-associated OB, type 1 YPZ3_3064 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3064 IPR040582 MalK, OB fold domain YPZ3_3064 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_3064 IPR017871 ABC transporter, conserved site YPZ3_3064 IPR003593 AAA+ ATPase domain YPZ3_3064 IPR003439 ABC transporter-like YPZ3_3065 IPR035906 MetI-like superfamily YPZ3_3065 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_3067 IPR006059 Bacterial extracellular solute-binding protein YPZ3_3070 IPR016181 Acyl-CoA N-acyltransferase YPZ3_3070 IPR000182 GNAT domain YPZ3_3074 IPR010131 RND efflux system, outer membrane lipoprotein, NodT YPZ3_3074 IPR012640 Membrane lipoprotein, lipid attachment site YPZ3_3074 IPR003423 Outer membrane efflux protein YPZ3_3075 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPZ3_3075 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPZ3_3075 IPR001036 Acriflavin resistance protein YPZ3_3076 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPZ3_3076 IPR006143 RND efflux pump, membrane fusion protein YPZ3_3077 IPR019949 Luciferase family oxidoreductase, group 1 YPZ3_3077 IPR036661 Luciferase-like domain superfamily YPZ3_3077 IPR011251 Luciferase-like domain YPZ3_3078 IPR001387 Cro/C1-type helix-turn-helix domain YPZ3_3078 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_3079 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain YPZ3_3079 IPR011545 DEAD/DEAH box helicase domain YPZ3_3079 IPR028618 ATP-dependent RNA helicase DeaD YPZ3_3079 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_3079 IPR021046 Cold-shock protein, DEAD box A, C-terminal YPZ3_3079 IPR034415 CsdA, RNA recognition motif YPZ3_3079 IPR001650 Helicase, C-terminal YPZ3_3079 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPZ3_3079 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3079 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YPZ3_3079 IPR014014 RNA helicase, DEAD-box type, Q motif YPZ3_3080 IPR011990 Tetratricopeptide-like helical domain superfamily YPZ3_3080 IPR013105 Tetratricopeptide repeat 2 YPZ3_3080 IPR019734 Tetratricopeptide repeat YPZ3_3080 IPR023605 Lipoprotein NlpI YPZ3_3080 IPR013026 Tetratricopeptide repeat-containing domain YPZ3_3081 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain YPZ3_3081 IPR027408 PNPase/RNase PH domain superfamily YPZ3_3081 IPR036612 K Homology domain, type 1 superfamily YPZ3_3081 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily YPZ3_3081 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_3081 IPR001247 Exoribonuclease, phosphorolytic domain 1 YPZ3_3081 IPR015847 Exoribonuclease, phosphorolytic domain 2 YPZ3_3081 IPR022967 RNA-binding domain, S1 YPZ3_3081 IPR003029 S1 domain YPZ3_3081 IPR036345 Exoribonuclease, PH domain 2 superfamily YPZ3_3081 IPR004087 K Homology domain YPZ3_3081 IPR004088 K Homology domain, type 1 YPZ3_3081 IPR012162 Polyribonucleotide nucleotidyltransferase YPZ3_3081 IPR012340 Nucleic acid-binding, OB-fold YPZ3_3082 IPR038965 Transposase InsF-like YPZ3_3082 IPR036397 Ribonuclease H superfamily YPZ3_3082 IPR012337 Ribonuclease H-like superfamily YPZ3_3082 IPR025948 HTH-like domain YPZ3_3082 IPR001584 Integrase, catalytic core YPZ3_3090 IPR041546 ClpA/ClpB, AAA lid domain YPZ3_3090 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3090 IPR018368 ClpA/B, conserved site 1 YPZ3_3090 IPR001270 ClpA/B family YPZ3_3090 IPR004176 Clp, N-terminal YPZ3_3090 IPR003593 AAA+ ATPase domain YPZ3_3090 IPR036628 Clp, N-terminal domain superfamily YPZ3_3090 IPR019489 Clp ATPase, C-terminal YPZ3_3090 IPR017729 Type VI secretion system, ATPase ClpV1 YPZ3_3090 IPR003959 ATPase, AAA-type, core YPZ3_3097 IPR006531 Gp5 N-terminal YPZ3_3097 IPR037026 Vgr protein, OB-fold domain superfamily YPZ3_3097 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPZ3_3097 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPZ3_3100 IPR025479 Domain of unknown function DUF4329 YPZ3_3100 IPR001826 RHS protein YPZ3_3100 IPR006530 YD repeat YPZ3_3100 IPR022385 Rhs repeat-associated core YPZ3_3100 IPR031325 RHS repeat YPZ3_3103 IPR037026 Vgr protein, OB-fold domain superfamily YPZ3_3103 IPR006531 Gp5 N-terminal YPZ3_3103 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPZ3_3103 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPZ3_3105 IPR022385 Rhs repeat-associated core YPZ3_3105 IPR006530 YD repeat YPZ3_3105 IPR001826 RHS protein YPZ3_3105 IPR031325 RHS repeat YPZ3_3108 IPR000683 Oxidoreductase, N-terminal YPZ3_3108 IPR036291 NAD(P)-binding domain superfamily YPZ3_3108 IPR004104 Oxidoreductase, C-terminal YPZ3_3109 IPR011051 RmlC-like cupin domain superfamily YPZ3_3109 IPR014710 RmlC-like jelly roll fold YPZ3_3109 IPR018060 DNA binding HTH domain, AraC-type YPZ3_3109 IPR009057 Homeobox-like domain superfamily YPZ3_3109 IPR003313 AraC-type arabinose-binding/dimerisation domain YPZ3_3110 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU YPZ3_3110 IPR023750 RbsD-like superfamily YPZ3_3110 IPR023064 D-ribose pyranase YPZ3_3111 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPZ3_3111 IPR011877 Ribokinase YPZ3_3111 IPR011611 Carbohydrate kinase PfkB YPZ3_3111 IPR002139 Ribokinase/fructokinase YPZ3_3111 IPR029056 Ribokinase-like YPZ3_3113 IPR029039 Flavoprotein-like superfamily YPZ3_3113 IPR005025 NADPH-dependent FMN reductase-like YPZ3_3113 IPR020048 NADPH-dependent FMN reductase, SsuE YPZ3_3114 IPR015168 SsuA/THI5-like YPZ3_3114 IPR010067 Aliphatic sulfonates-binding protein YPZ3_3114 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPZ3_3115 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent YPZ3_3115 IPR036661 Luciferase-like domain superfamily YPZ3_3115 IPR011251 Luciferase-like domain YPZ3_3116 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_3116 IPR035906 MetI-like superfamily YPZ3_3117 IPR003593 AAA+ ATPase domain YPZ3_3117 IPR003439 ABC transporter-like YPZ3_3117 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB YPZ3_3117 IPR017871 ABC transporter, conserved site YPZ3_3117 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3118 IPR006043 Xanthine/uracil/vitamin C permease YPZ3_3119 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria YPZ3_3119 IPR006153 Cation/H+ exchanger YPZ3_3119 IPR038770 Sodium/solute symporter superfamily YPZ3_3119 IPR018422 Cation/H+ exchanger, CPA1 family YPZ3_3121 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP YPZ3_3121 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YPZ3_3121 IPR004960 Bacterial lipid A biosynthesis acyltransferase YPZ3_3123 IPR003593 AAA+ ATPase domain YPZ3_3123 IPR003439 ABC transporter-like YPZ3_3123 IPR017871 ABC transporter, conserved site YPZ3_3123 IPR015861 ABC transporter, ribose import, RbsA YPZ3_3123 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3124 IPR001851 ABC transporter, permease YPZ3_3126 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPZ3_3126 IPR000577 Carbohydrate kinase, FGGY YPZ3_3126 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPZ3_3126 IPR005929 Ribulokinase YPZ3_3127 IPR000644 CBS domain YPZ3_3127 IPR001347 Sugar isomerase (SIS) YPZ3_3127 IPR035474 KpsF-like, SIS domain YPZ3_3127 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type YPZ3_3128 IPR004045 Glutathione S-transferase, N-terminal YPZ3_3128 IPR036249 Thioredoxin-like superfamily YPZ3_3128 IPR010987 Glutathione S-transferase, C-terminal-like YPZ3_3128 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPZ3_3128 IPR040079 Glutathione Transferase family YPZ3_3132 IPR008816 Glycine zipper 2TM domain YPZ3_3133 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPZ3_3133 IPR001279 Metallo-beta-lactamase YPZ3_3134 IPR015815 3-hydroxyisobutyrate dehydrogenase-related YPZ3_3134 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain YPZ3_3134 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding YPZ3_3134 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPZ3_3134 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPZ3_3134 IPR036291 NAD(P)-binding domain superfamily YPZ3_3134 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site YPZ3_3135 IPR012788 4-carboxymuconolactone decarboxylase YPZ3_3135 IPR003779 Carboxymuconolactone decarboxylase-like YPZ3_3135 IPR029032 AhpD-like YPZ3_3136 IPR036259 MFS transporter superfamily YPZ3_3136 IPR004736 MFS transporter, metabolite:H symporter YPZ3_3136 IPR020846 Major facilitator superfamily domain YPZ3_3136 IPR011701 Major facilitator superfamily YPZ3_3136 IPR005829 Sugar transporter, conserved site YPZ3_3139 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 YPZ3_3139 IPR001269 tRNA-dihydrouridine synthase YPZ3_3139 IPR013785 Aldolase-type TIM barrel YPZ3_3139 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal YPZ3_3139 IPR035587 DUS-like, FMN-binding domain YPZ3_3139 IPR018517 tRNA-dihydrouridine synthase, conserved site YPZ3_3139 IPR032887 tRNA-dihydrouridine synthase B YPZ3_3140 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_3140 IPR004498 Ribosomal protein L11 methyltransferase YPZ3_3141 IPR001734 Sodium/solute symporter YPZ3_3141 IPR011849 Sodium/pantothenate symporter YPZ3_3141 IPR018212 Sodium/solute symporter, conserved site YPZ3_3141 IPR038377 Sodium/glucose symporter superfamily YPZ3_3142 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain YPZ3_3142 IPR016185 Pre-ATP-grasp domain superfamily YPZ3_3142 IPR011054 Rudiment single hybrid motif YPZ3_3142 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase YPZ3_3142 IPR011761 ATP-grasp fold YPZ3_3142 IPR013815 ATP-grasp fold, subdomain 1 YPZ3_3142 IPR005481 Biotin carboxylase-like, N-terminal domain YPZ3_3142 IPR011764 Biotin carboxylation domain YPZ3_3142 IPR005482 Biotin carboxylase, C-terminal YPZ3_3143 IPR001882 Biotin-binding site YPZ3_3143 IPR000089 Biotin/lipoyl attachment YPZ3_3143 IPR011053 Single hybrid motif YPZ3_3143 IPR001249 Acetyl-CoA biotin carboxyl carrier YPZ3_3144 IPR018509 Dehydroquinase, class II, conserved site YPZ3_3144 IPR036441 Dehydroquinase, class II superfamily YPZ3_3144 IPR001874 Dehydroquinase, class II YPZ3_3145 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ YPZ3_3145 IPR013130 Ferric reductase transmembrane component-like domain YPZ3_3146 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily YPZ3_3146 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP YPZ3_3146 IPR000572 Oxidoreductase, molybdopterin-binding domain YPZ3_3147 IPR020843 Polyketide synthase, enoylreductase domain YPZ3_3147 IPR036291 NAD(P)-binding domain superfamily YPZ3_3147 IPR013154 Alcohol dehydrogenase, N-terminal YPZ3_3147 IPR011032 GroES-like superfamily YPZ3_3147 IPR013149 Alcohol dehydrogenase, C-terminal YPZ3_3147 IPR014188 Acrylyl-CoA reductase AcuI YPZ3_3148 IPR001633 EAL domain YPZ3_3148 IPR035919 EAL domain superfamily YPZ3_3148 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 YPZ3_3148 IPR000160 GGDEF domain YPZ3_3148 IPR029787 Nucleotide cyclase YPZ3_3149 IPR004753 Cell shape determining protein MreB YPZ3_3150 IPR007221 Rod shape-determining protein MreC YPZ3_3150 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 YPZ3_3150 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 YPZ3_3151 IPR026034 Cell shape-determining protein MreD, proteobacterial type YPZ3_3151 IPR007227 Cell shape-determining protein MreD YPZ3_3152 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein YPZ3_3152 IPR029001 Inosine triphosphate pyrophosphatase-like YPZ3_3153 IPR004659 Ribonuclease E/G YPZ3_3153 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G YPZ3_3153 IPR012340 Nucleic acid-binding, OB-fold YPZ3_3153 IPR003029 S1 domain YPZ3_3153 IPR022967 RNA-binding domain, S1 YPZ3_3154 IPR025263 Domain of unknown function DUF3971 YPZ3_3154 IPR011836 Conserved hypothetical protein CHP02099 YPZ3_3154 IPR032712 AsmA-like, C-terminal YPZ3_3155 IPR036526 Carbon-nitrogen hydrolase superfamily YPZ3_3155 IPR001110 Uncharacterised protein family UPF0012, conserved site YPZ3_3155 IPR003010 Carbon-nitrogen hydrolase YPZ3_3156 IPR025502 TldD YPZ3_3156 IPR002510 Metalloprotease TldD/PmbA YPZ3_3156 IPR035068 Metalloprotease TldD/PmbA, N-terminal YPZ3_3156 IPR036059 Metalloprotease TldD/PmbA superfamily YPZ3_3157 IPR025968 YwqJ-like deaminase YPZ3_3157 IPR041508 Toxin complex C-like repeat YPZ3_3157 IPR022385 Rhs repeat-associated core YPZ3_3158 IPR008430 Cytotoxic necrotizing factor, Rho-activating domain YPZ3_3158 IPR041508 Toxin complex C-like repeat YPZ3_3158 IPR011324 Cytotoxic necrotizing factor-like, catalytic YPZ3_3158 IPR037040 Cytotoxic necrotizing factor, Rho-activating domain superfamily YPZ3_3158 IPR022385 Rhs repeat-associated core YPZ3_3162 IPR022045 Insecticide toxin TcdB middle/N-terminal YPZ3_3162 IPR022044 Insecticide toxin TcdB middle/C-terminal YPZ3_3162 IPR003284 Salmonella virulence plasmid 65kDa B protein YPZ3_3163 IPR040840 Tc toxin complex TcA, C-terminal TcB-binding domain YPZ3_3163 IPR041079 Neuraminidase-like domain YPZ3_3167 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_3167 IPR005119 LysR, substrate-binding YPZ3_3167 IPR000847 Transcription regulator HTH, LysR YPZ3_3167 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_3168 IPR006143 RND efflux pump, membrane fusion protein YPZ3_3168 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPZ3_3168 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA YPZ3_3169 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB YPZ3_3169 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein YPZ3_3170 IPR015590 Aldehyde dehydrogenase domain YPZ3_3170 IPR016163 Aldehyde dehydrogenase, C-terminal YPZ3_3170 IPR016162 Aldehyde dehydrogenase, N-terminal YPZ3_3170 IPR016160 Aldehyde dehydrogenase, cysteine active site YPZ3_3170 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPZ3_3170 IPR010102 Succinate semialdehyde dehydrogenase YPZ3_3170 IPR016161 Aldehyde/histidinol dehydrogenase YPZ3_3171 IPR016160 Aldehyde dehydrogenase, cysteine active site YPZ3_3171 IPR016162 Aldehyde dehydrogenase, N-terminal YPZ3_3171 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPZ3_3171 IPR016163 Aldehyde dehydrogenase, C-terminal YPZ3_3171 IPR016161 Aldehyde/histidinol dehydrogenase YPZ3_3171 IPR015590 Aldehyde dehydrogenase domain YPZ3_3171 IPR010102 Succinate semialdehyde dehydrogenase YPZ3_3173 IPR006839 Ribosome-associated, YjgA YPZ3_3173 IPR023153 PSPTO4464-like domain superfamily YPZ3_3174 IPR036059 Metalloprotease TldD/PmbA superfamily YPZ3_3174 IPR035068 Metalloprotease TldD/PmbA, N-terminal YPZ3_3174 IPR002510 Metalloprotease TldD/PmbA YPZ3_3176 IPR009155 Cytochrome b562 YPZ3_3176 IPR010980 Cytochrome c/b562 YPZ3_3177 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPZ3_3177 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain YPZ3_3177 IPR028625 Regulator of nucleoside diphosphate kinase YPZ3_3177 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily YPZ3_3177 IPR023459 Transcription elongation factor GreA/GreB family YPZ3_3178 IPR017853 Glycoside hydrolase superfamily YPZ3_3178 IPR012769 Trehalose-6-phosphate hydrolase YPZ3_3178 IPR013780 Glycosyl hydrolase, all-beta YPZ3_3178 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPZ3_3178 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) YPZ3_3179 IPR001996 Phosphotransferase system, IIB component, type 1 YPZ3_3179 IPR013013 Phosphotransferase system, EIIC component, type 1 YPZ3_3179 IPR003352 Phosphotransferase system, EIIC YPZ3_3179 IPR011296 Phosphotransferase system, trehalose-specific IIBC component YPZ3_3179 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component YPZ3_3179 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPZ3_3179 IPR036878 Glucose permease domain IIB YPZ3_3180 IPR000843 LacI-type HTH domain YPZ3_3180 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPZ3_3180 IPR012771 Trehalose operon repressor YPZ3_3180 IPR028082 Periplasmic binding protein-like I YPZ3_3182 IPR006175 YjgF/YER057c/UK114 family YPZ3_3182 IPR035959 RutC-like superfamily YPZ3_3182 IPR019897 RidA, conserved site YPZ3_3182 IPR006056 RidA family YPZ3_3183 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal YPZ3_3183 IPR002801 Aspartate transcarbamylase regulatory subunit YPZ3_3183 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily YPZ3_3183 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily YPZ3_3183 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal YPZ3_3184 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YPZ3_3184 IPR002082 Aspartate carbamoyltransferase YPZ3_3184 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily YPZ3_3184 IPR006130 Aspartate/ornithine carbamoyltransferase YPZ3_3184 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YPZ3_3185 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3185 IPR005337 RapZ-like family YPZ3_3186 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN YPZ3_3186 IPR002178 PTS EIIA type-2 domain YPZ3_3186 IPR016152 Phosphotransferase/anion transporter YPZ3_3187 IPR007046 RNA polymerase sigma factor 54, core-binding domain YPZ3_3187 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily YPZ3_3187 IPR000394 RNA polymerase sigma factor 54 YPZ3_3187 IPR007634 RNA polymerase sigma factor 54, DNA-binding YPZ3_3188 IPR017871 ABC transporter, conserved site YPZ3_3188 IPR003439 ABC transporter-like YPZ3_3188 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal YPZ3_3188 IPR030921 LPS export ABC transporter, ATP-binding protein LptB YPZ3_3188 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3188 IPR003593 AAA+ ATPase domain YPZ3_3189 IPR005653 Organic solvent tolerance-like, N-terminal YPZ3_3189 IPR014340 Lipopolysaccharide export system protein LptA YPZ3_3190 IPR010664 Lipopolysaccharide assembly, LptC-related YPZ3_3190 IPR026265 Lipopolysaccharide export system protein LptC YPZ3_3191 IPR010023 KdsC family YPZ3_3191 IPR023214 HAD superfamily YPZ3_3191 IPR036412 HAD-like superfamily YPZ3_3192 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type YPZ3_3192 IPR000644 CBS domain YPZ3_3192 IPR001347 Sugar isomerase (SIS) YPZ3_3192 IPR035474 KpsF-like, SIS domain YPZ3_3193 IPR004837 Sodium/calcium exchanger membrane region YPZ3_3193 IPR004481 Sodium/potassium/calcium exchanger YPZ3_3194 IPR003593 AAA+ ATPase domain YPZ3_3194 IPR003439 ABC transporter-like YPZ3_3194 IPR017871 ABC transporter, conserved site YPZ3_3194 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl YPZ3_3194 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3195 IPR003453 ABC transport permease subunit MlaE, Proteobacteria YPZ3_3195 IPR030802 ABC transporter permease MalE YPZ3_3196 IPR003399 Mce/MlaD YPZ3_3196 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD YPZ3_3197 IPR042245 Tgt2/MlaC superfamily YPZ3_3197 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC YPZ3_3198 IPR036513 STAS domain superfamily YPZ3_3198 IPR002645 STAS domain YPZ3_3199 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YPZ3_3199 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YPZ3_3199 IPR036968 Enolpyruvate transferase domain superfamily YPZ3_3199 IPR001986 Enolpyruvate transferase domain YPZ3_3200 IPR001478 PDZ domain YPZ3_3200 IPR036034 PDZ superfamily YPZ3_3200 IPR011783 Peptidase S1C, DegS YPZ3_3200 IPR009003 Peptidase S1, PA clan YPZ3_3200 IPR001940 Peptidase S1C YPZ3_3201 IPR036515 Transposase IS200-like superfamily YPZ3_3201 IPR002686 Transposase IS200-like YPZ3_3202 IPR009003 Peptidase S1, PA clan YPZ3_3202 IPR036034 PDZ superfamily YPZ3_3202 IPR001478 PDZ domain YPZ3_3202 IPR001940 Peptidase S1C YPZ3_3202 IPR011782 Peptidase S1C, Do YPZ3_3203 IPR009386 Protein of unknown function DUF1043 YPZ3_3204 IPR005654 ATPase, AFG1-like YPZ3_3204 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3204 IPR030870 Cell division protein ZapE YPZ3_3205 IPR036899 Ribosomal protein L13 superfamily YPZ3_3205 IPR023563 Ribosomal protein L13, conserved site YPZ3_3205 IPR005823 Ribosomal protein L13, bacterial-type YPZ3_3205 IPR005822 Ribosomal protein L13 YPZ3_3206 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_3206 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPZ3_3206 IPR000754 Ribosomal protein S9 YPZ3_3206 IPR023035 Ribosomal protein S9, bacterial/plastid YPZ3_3206 IPR020574 Ribosomal protein S9, conserved site YPZ3_3207 IPR036249 Thioredoxin-like superfamily YPZ3_3207 IPR040079 Glutathione Transferase family YPZ3_3207 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPZ3_3207 IPR034341 Stringent starvation protein A, N-terminal YPZ3_3207 IPR004046 Glutathione S-transferase, C-terminal YPZ3_3207 IPR004045 Glutathione S-transferase, N-terminal YPZ3_3207 IPR010987 Glutathione S-transferase, C-terminal-like YPZ3_3208 IPR007481 Stringent starvation protein B YPZ3_3208 IPR036760 SspB-like superfamily YPZ3_3210 IPR028261 Dihydroprymidine dehydrogenase domain II YPZ3_3210 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_3210 IPR009051 Alpha-helical ferredoxin YPZ3_3210 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 YPZ3_3210 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_3210 IPR023753 FAD/NAD(P)-binding domain YPZ3_3211 IPR006982 Glutamate synthase, central-N YPZ3_3211 IPR013785 Aldolase-type TIM barrel YPZ3_3211 IPR029055 Nucleophile aminohydrolases, N-terminal YPZ3_3211 IPR002932 Glutamate synthase domain YPZ3_3211 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily YPZ3_3211 IPR002489 Glutamate synthase, alpha subunit, C-terminal YPZ3_3211 IPR017932 Glutamine amidotransferase type 2 domain YPZ3_3212 IPR023404 Radical SAM, alpha/beta horseshoe YPZ3_3212 IPR032432 Radical SAM, C-terminal extension YPZ3_3212 IPR005911 Protein YhcC-like YPZ3_3212 IPR039661 ELP3/YhcC YPZ3_3212 IPR007197 Radical SAM YPZ3_3212 IPR006638 Elp3/MiaB/NifB YPZ3_3213 IPR011006 CheY-like superfamily YPZ3_3213 IPR013767 PAS fold YPZ3_3213 IPR035965 PAS domain superfamily YPZ3_3213 IPR000700 PAS-associated, C-terminal YPZ3_3213 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_3213 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_3213 IPR040642 Histidine kinase receptor ArcB, transmembrane domain YPZ3_3213 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily YPZ3_3213 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_3213 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_3213 IPR005467 Histidine kinase domain YPZ3_3213 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_3213 IPR000014 PAS domain YPZ3_3213 IPR036641 HPT domain superfamily YPZ3_3213 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB YPZ3_3213 IPR001789 Signal transduction response regulator, receiver domain YPZ3_3213 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPZ3_3214 IPR029062 Class I glutamine amidotransferase-like YPZ3_3214 IPR026041 Glyoxalase ElbB YPZ3_3215 IPR023346 Lysozyme-like domain superfamily YPZ3_3215 IPR001264 Glycosyl transferase, family 51 YPZ3_3215 IPR011812 Biosynthetic peptidoglycan transglycosylase YPZ3_3215 IPR036950 Penicillin binding protein transglycosylase domain YPZ3_3216 IPR014004 Transport-associated and nodulation domain, bacteria YPZ3_3216 IPR007055 BON domain YPZ3_3217 IPR035461 GmhA/DiaA YPZ3_3217 IPR023070 DnaA initiator-associating protein YPZ3_3217 IPR001347 Sugar isomerase (SIS) YPZ3_3218 IPR011856 tRNA endonuclease-like domain superfamily YPZ3_3218 IPR003509 Uncharacterised protein family UPF0102 YPZ3_3218 IPR011335 Restriction endonuclease type II-like YPZ3_3219 IPR028082 Periplasmic binding protein-like I YPZ3_3219 IPR011990 Tetratricopeptide-like helical domain superfamily YPZ3_3219 IPR007443 Penicillin-binding protein activator LpoA YPZ3_3220 IPR000878 Tetrapyrrole methylase YPZ3_3220 IPR035996 Tetrapyrrole methylase superfamily YPZ3_3220 IPR014777 Tetrapyrrole methylase, subdomain 1 YPZ3_3220 IPR014776 Tetrapyrrole methylase, subdomain 2 YPZ3_3220 IPR008189 rRNA small subunit methyltransferase I YPZ3_3220 IPR018063 SAM-dependent methyltransferase RsmI, conserved site YPZ3_3221 IPR014710 RmlC-like jelly roll fold YPZ3_3221 IPR011051 RmlC-like cupin domain superfamily YPZ3_3221 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain YPZ3_3221 IPR003829 Pirin, N-terminal domain YPZ3_3221 IPR012093 Pirin YPZ3_3222 IPR005119 LysR, substrate-binding YPZ3_3222 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_3222 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_3222 IPR000847 Transcription regulator HTH, LysR YPZ3_3223 IPR036249 Thioredoxin-like superfamily YPZ3_3223 IPR004045 Glutathione S-transferase, N-terminal YPZ3_3223 IPR016639 Glutathione S-transferase Omega/GSH YPZ3_3223 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPZ3_3223 IPR040079 Glutathione Transferase family YPZ3_3223 IPR010987 Glutathione S-transferase, C-terminal-like YPZ3_3224 IPR001270 ClpA/B family YPZ3_3224 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_3224 IPR003593 AAA+ ATPase domain YPZ3_3224 IPR002611 IstB-like ATP-binding protein YPZ3_3224 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3225 IPR017894 HTH domain, IS21 transposase-type YPZ3_3225 IPR001584 Integrase, catalytic core YPZ3_3225 IPR006120 Resolvase, HTH domain YPZ3_3225 IPR012337 Ribonuclease H-like superfamily YPZ3_3225 IPR036397 Ribonuclease H superfamily YPZ3_3226 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain YPZ3_3226 IPR029058 Alpha/Beta hydrolase fold YPZ3_3227 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 YPZ3_3227 IPR020814 Ribosomal protein S6, plastid/chloroplast YPZ3_3227 IPR035980 Ribosomal protein S6 superfamily YPZ3_3227 IPR000529 Ribosomal protein S6 YPZ3_3227 IPR020815 Ribosomal protein S6, conserved site YPZ3_3228 IPR000244 Ribosomal protein L9 YPZ3_3228 IPR009027 Ribosomal protein L9/RNase H1, N-terminal YPZ3_3228 IPR020594 Ribosomal protein L9, bacteria/chloroplast YPZ3_3228 IPR020070 Ribosomal protein L9, N-terminal YPZ3_3228 IPR036791 Ribosomal protein L9, C-terminal domain superfamily YPZ3_3228 IPR036935 Ribosomal protein L9, N-terminal domain superfamily YPZ3_3228 IPR020069 Ribosomal protein L9, C-terminal YPZ3_3229 IPR002686 Transposase IS200-like YPZ3_3229 IPR036515 Transposase IS200-like superfamily YPZ3_3231 IPR013731 Opacity-associated protein A, N-terminal YPZ3_3231 IPR007340 Opacity-associated protein A YPZ3_3232 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPZ3_3232 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YPZ3_3232 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily YPZ3_3233 IPR019903 Repair of iron centres family YPZ3_3233 IPR023742 Iron-sulfur cluster repair protein YftE YPZ3_3233 IPR012312 Haemerythrin-like YPZ3_3234 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPZ3_3234 IPR041827 CpdB, N-terminal metallophosphatase domain YPZ3_3234 IPR008334 5'-Nucleotidase, C-terminal YPZ3_3234 IPR029052 Metallo-dependent phosphatase-like YPZ3_3234 IPR036907 5'-Nucleotidase, C-terminal domain superfamily YPZ3_3234 IPR006146 5'-Nucleotidase, conserved site YPZ3_3234 IPR006179 5'-Nucleotidase/apyrase YPZ3_3234 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase YPZ3_3235 IPR000760 Inositol monophosphatase-like YPZ3_3235 IPR020550 Inositol monophosphatase, conserved site YPZ3_3235 IPR020583 Inositol monophosphatase, metal-binding site YPZ3_3235 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ YPZ3_3236 IPR006513 Conserved hypothetical protein CHP01626, YtfJ YPZ3_3237 IPR005170 Transporter-associated domain YPZ3_3237 IPR000644 CBS domain YPZ3_3237 IPR036318 FAD-binding, type PCMH-like superfamily YPZ3_3237 IPR016169 FAD-binding, type PCMH, subdomain 2 YPZ3_3237 IPR002550 CNNM, transmembrane domain YPZ3_3238 IPR002569 Peptide methionine sulphoxide reductase MsrA YPZ3_3238 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily YPZ3_3239 IPR035243 TamA, POTRA domain 1 YPZ3_3239 IPR034746 POTRA domain YPZ3_3239 IPR039910 Surface antigen D15-like YPZ3_3239 IPR010827 POTRA domain, BamA/TamA-like YPZ3_3239 IPR000184 Bacterial surface antigen (D15) YPZ3_3240 IPR007452 Translocation and assembly module TamB YPZ3_3241 IPR039126 Gamma-glutamylaminecyclotransferase YPZ3_3241 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like YPZ3_3241 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily YPZ3_3241 IPR013024 Gamma-glutamyl cyclotransferase-like YPZ3_3242 IPR008162 Inorganic pyrophosphatase YPZ3_3242 IPR036649 Inorganic pyrophosphatase superfamily YPZ3_3243 IPR020548 Fructose-1,6-bisphosphatase, active site YPZ3_3243 IPR028343 Fructose-1,6-bisphosphatase YPZ3_3243 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal YPZ3_3243 IPR000146 Fructose-1,6-bisphosphatase class 1 YPZ3_3244 IPR005757 Murein peptide ligase YPZ3_3244 IPR000713 Mur ligase, N-terminal catalytic domain YPZ3_3244 IPR013221 Mur ligase, central YPZ3_3244 IPR036615 Mur ligase, C-terminal domain superfamily YPZ3_3244 IPR004101 Mur ligase, C-terminal YPZ3_3244 IPR036565 Mur-like, catalytic domain superfamily YPZ3_3245 IPR020900 Arginine repressor, DNA-binding domain YPZ3_3245 IPR036251 Arginine repressor, C-terminal domain superfamily YPZ3_3245 IPR020899 Arginine repressor, C-terminal YPZ3_3245 IPR001669 Arginine repressor YPZ3_3245 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_3245 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_3246 IPR001557 L-lactate/malate dehydrogenase YPZ3_3246 IPR001236 Lactate/malate dehydrogenase, N-terminal YPZ3_3246 IPR010097 Malate dehydrogenase, type 1 YPZ3_3246 IPR001252 Malate dehydrogenase, active site YPZ3_3246 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal YPZ3_3246 IPR036291 NAD(P)-binding domain superfamily YPZ3_3246 IPR022383 Lactate/malate dehydrogenase, C-terminal YPZ3_3246 IPR023958 Malate dehydrogenase, type 1, bacterial YPZ3_3248 IPR033749 Polyprenyl synthetase, conserved site YPZ3_3248 IPR000092 Polyprenyl synthetase YPZ3_3248 IPR008949 Isoprenoid synthase domain superfamily YPZ3_3249 IPR018258 Ribosomal protein L21, conserved site YPZ3_3249 IPR001787 Ribosomal protein L21 YPZ3_3249 IPR036164 L21-like superfamily YPZ3_3249 IPR028909 Ribosomal protein L21-like YPZ3_3250 IPR000620 EamA domain YPZ3_3251 IPR035101 GTP-binding protein, Obg-type YPZ3_3251 IPR006074 GTP1/OBG, conserved site YPZ3_3251 IPR006073 GTP binding domain YPZ3_3251 IPR031167 OBG-type guanine nucleotide-binding (G) domain YPZ3_3251 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3251 IPR014100 GTP-binding protein Obg/CgtA YPZ3_3251 IPR036726 GTP1/OBG domain superfamily YPZ3_3251 IPR006169 GTP1/OBG domain YPZ3_3252 IPR003660 HAMP domain YPZ3_3252 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPZ3_3252 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_3252 IPR005467 Histidine kinase domain YPZ3_3252 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPZ3_3252 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPZ3_3252 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_3253 IPR011006 CheY-like superfamily YPZ3_3253 IPR001867 OmpR/PhoB-type DNA-binding domain YPZ3_3253 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_3253 IPR039420 Transcriptional regulatory protein WalR-like YPZ3_3253 IPR001789 Signal transduction response regulator, receiver domain YPZ3_3254 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C YPZ3_3254 IPR012338 Beta-lactamase/transpeptidase-like YPZ3_3255 IPR018151 Transcription elongation factor, GreA/GreB, conserved site YPZ3_3255 IPR006359 Transcription elongation factor GreA YPZ3_3255 IPR028624 Transcription elongation factor GreA/GreB YPZ3_3255 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPZ3_3255 IPR023459 Transcription elongation factor GreA/GreB family YPZ3_3255 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal YPZ3_3255 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily YPZ3_3255 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily YPZ3_3256 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria YPZ3_3256 IPR002877 Ribosomal RNA methyltransferase FtsJ domain YPZ3_3256 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_3256 IPR015507 Ribosomal RNA large subunit methyltransferase E YPZ3_3257 IPR005936 Peptidase, FtsH YPZ3_3257 IPR011546 Peptidase M41, FtsH extracellular YPZ3_3257 IPR041569 AAA ATPase, AAA+ lid domain YPZ3_3257 IPR003959 ATPase, AAA-type, core YPZ3_3257 IPR003960 ATPase, AAA-type, conserved site YPZ3_3257 IPR003593 AAA+ ATPase domain YPZ3_3257 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3257 IPR000642 Peptidase M41 YPZ3_3257 IPR037219 Peptidase M41-like YPZ3_3258 IPR006390 Dihydropteroate synthase YPZ3_3258 IPR011005 Dihydropteroate synthase-like YPZ3_3258 IPR000489 Pterin-binding domain YPZ3_3259 IPR016066 Alpha-D-phosphohexomutase, conserved site YPZ3_3259 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPZ3_3259 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YPZ3_3259 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPZ3_3259 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPZ3_3259 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPZ3_3259 IPR006352 Phosphoglucosamine mutase, bacterial type YPZ3_3259 IPR005841 Alpha-D-phosphohexomutase superfamily YPZ3_3259 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPZ3_3260 IPR028989 Ribosome maturation factor RimP, N-terminal YPZ3_3260 IPR003728 Ribosome maturation factor RimP YPZ3_3260 IPR028998 Ribosome maturation factor RimP, C-terminal YPZ3_3260 IPR035956 RimP, N-terminal domain superfamily YPZ3_3260 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily YPZ3_3261 IPR022967 RNA-binding domain, S1 YPZ3_3261 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical YPZ3_3261 IPR013735 Transcription factor NusA, N-terminal YPZ3_3261 IPR010214 Transcription termination factor NusA, C-terminal duplication YPZ3_3261 IPR010213 Transcription termination factor NusA YPZ3_3261 IPR003029 S1 domain YPZ3_3261 IPR009019 K homology domain superfamily, prokaryotic type YPZ3_3261 IPR030842 Transcription termination/antitermination protein NusA, bacterial YPZ3_3261 IPR012340 Nucleic acid-binding, OB-fold YPZ3_3261 IPR025249 KH domain, NusA-like YPZ3_3261 IPR015946 K homology domain-like, alpha/beta YPZ3_3261 IPR036555 NusA, N-terminal domain superfamily YPZ3_3262 IPR015760 Translation initiation factor IF- 2 YPZ3_3262 IPR000178 Translation initiation factor aIF-2, bacterial-like YPZ3_3262 IPR000795 Transcription factor, GTP-binding domain YPZ3_3262 IPR006847 Translation initiation factor IF-2, N-terminal YPZ3_3262 IPR005225 Small GTP-binding protein domain YPZ3_3262 IPR009061 Putative DNA-binding domain superfamily YPZ3_3262 IPR004161 Translation elongation factor EFTu-like, domain 2 YPZ3_3262 IPR013575 Initiation factor 2 associated domain, bacterial YPZ3_3262 IPR009000 Translation protein, beta-barrel domain superfamily YPZ3_3262 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3262 IPR036925 Translation initiation factor IF-2, domain 3 superfamily YPZ3_3262 IPR023115 Translation initiation factor IF- 2, domain 3 YPZ3_3263 IPR020053 Ribosome-binding factor A, conserved site YPZ3_3263 IPR023799 Ribosome-binding factor A domain superfamily YPZ3_3263 IPR015946 K homology domain-like, alpha/beta YPZ3_3263 IPR000238 Ribosome-binding factor A YPZ3_3264 IPR032819 tRNA pseudouridylate synthase B, C-terminal YPZ3_3264 IPR036974 PUA domain superfamily YPZ3_3264 IPR015947 PUA-like superfamily YPZ3_3264 IPR002501 Pseudouridine synthase II, N-terminal YPZ3_3264 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal YPZ3_3264 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPZ3_3264 IPR014780 tRNA pseudouridine synthase II, TruB YPZ3_3266 IPR025948 HTH-like domain YPZ3_3266 IPR038965 Transposase InsF-like YPZ3_3266 IPR001584 Integrase, catalytic core YPZ3_3266 IPR012337 Ribonuclease H-like superfamily YPZ3_3266 IPR036397 Ribonuclease H superfamily YPZ3_3270 IPR008514 Type VI secretion system effector, Hcp YPZ3_3270 IPR036624 Hcp1-like superfamily YPZ3_3271 IPR010794 Maltose operon periplasmic YPZ3_3272 IPR023738 Maltoporin YPZ3_3272 IPR003192 Porin, LamB-type YPZ3_3272 IPR036998 Porin, LamB-type superfamily YPZ3_3273 IPR015855 ABC transporter, maltose/maltodextrin import, MalK YPZ3_3273 IPR017871 ABC transporter, conserved site YPZ3_3273 IPR003593 AAA+ ATPase domain YPZ3_3273 IPR003439 ABC transporter-like YPZ3_3273 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3273 IPR040582 MalK, OB fold domain YPZ3_3273 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_3274 IPR006061 Solute-binding family 1, conserved site YPZ3_3274 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein YPZ3_3274 IPR006059 Bacterial extracellular solute-binding protein YPZ3_3275 IPR035906 MetI-like superfamily YPZ3_3275 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_3275 IPR029345 Maltose transport system permease protein MalF, P2 domain YPZ3_3275 IPR035277 MalF, N-terminal YPZ3_3275 IPR030156 Maltose/maltodextrin transport system permease protein MalF-like YPZ3_3276 IPR035906 MetI-like superfamily YPZ3_3276 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_3277 IPR009315 Phosphate-starvation-induced PsiE YPZ3_3277 IPR020948 Phosphate-starvation-induced PsiE-like YPZ3_3278 IPR001672 Phosphoglucose isomerase (PGI) YPZ3_3278 IPR035482 Phosphoglucose isomerase, SIS domain 2 YPZ3_3278 IPR035476 Phosphoglucose isomerase, SIS domain 1 YPZ3_3278 IPR018189 Phosphoglucose isomerase, conserved site YPZ3_3278 IPR023096 Phosphoglucose isomerase, C-terminal YPZ3_3279 IPR005260 Aspartate kinase, monofunctional class YPZ3_3279 IPR018042 Aspartate kinase, conserved site YPZ3_3279 IPR001048 Aspartate/glutamate/uridylate kinase YPZ3_3279 IPR041745 Lysine-sensitive aspartokinase 3, N-terminal catalytic domain YPZ3_3279 IPR002912 ACT domain YPZ3_3279 IPR001341 Aspartate kinase YPZ3_3279 IPR036393 Acetylglutamate kinase-like superfamily YPZ3_3280 IPR027282 Two partner secretion pathway transporter YPZ3_3280 IPR035251 ShlB, POTRA domain YPZ3_3280 IPR034746 POTRA domain YPZ3_3280 IPR005565 Haemolysin activator HlyB, C-terminal YPZ3_3280 IPR013686 Polypeptide-transport-associated, ShlB-type YPZ3_3281 IPR027282 Two partner secretion pathway transporter YPZ3_3281 IPR005565 Haemolysin activator HlyB, C-terminal YPZ3_3281 IPR034746 POTRA domain YPZ3_3281 IPR013686 Polypeptide-transport-associated, ShlB-type YPZ3_3281 IPR035251 ShlB, POTRA domain YPZ3_3282 IPR025157 Hemagglutinin repeat YPZ3_3282 IPR011050 Pectin lyase fold/virulence factor YPZ3_3282 IPR012334 Pectin lyase fold YPZ3_3282 IPR008638 Filamentous haemagglutinin, N-terminal YPZ3_3283 IPR011005 Dihydropteroate synthase-like YPZ3_3283 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily YPZ3_3283 IPR004223 Vitamin B12-dependent methionine synthase, activation domain YPZ3_3283 IPR003726 Homocysteine-binding domain YPZ3_3283 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain YPZ3_3283 IPR000489 Pterin-binding domain YPZ3_3283 IPR033706 Methionine synthase, B12-binding domain YPZ3_3283 IPR011822 Cobalamin-dependent methionine synthase YPZ3_3283 IPR036589 Homocysteine-binding domain superfamily YPZ3_3283 IPR036594 Methionine synthase domain YPZ3_3283 IPR036724 Cobalamin-binding domain superfamily YPZ3_3283 IPR006158 Cobalamin (vitamin B12)-binding domain YPZ3_3284 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_3284 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_3284 IPR014757 Transcription regulator IclR, C-terminal YPZ3_3284 IPR029016 GAF-like domain superfamily YPZ3_3284 IPR005471 Transcription regulator IclR, N-terminal YPZ3_3285 IPR029016 GAF-like domain superfamily YPZ3_3285 IPR014757 Transcription regulator IclR, C-terminal YPZ3_3285 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_3285 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_3285 IPR005471 Transcription regulator IclR, N-terminal YPZ3_3286 IPR010452 Isocitrate dehydrogenase kinasephosphatase YPZ3_3287 IPR040442 Pyruvate kinase-like domain superfamily YPZ3_3287 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPZ3_3287 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site YPZ3_3287 IPR039556 ICL/PEPM domain YPZ3_3287 IPR006254 Isocitrate lyase YPZ3_3288 IPR011076 Malate synthase-like superfamily YPZ3_3288 IPR019830 Malate synthase, conserved site YPZ3_3288 IPR001465 Malate synthase YPZ3_3288 IPR006252 Malate synthase A YPZ3_3289 IPR033752 MetA family YPZ3_3289 IPR029062 Class I glutamine amidotransferase-like YPZ3_3289 IPR005697 Homoserine O-succinyltransferase MetA YPZ3_3290 IPR036914 Methylglyoxal synthase-like domain superfamily YPZ3_3290 IPR002695 Bifunctional purine biosynthesis protein PurH-like YPZ3_3290 IPR011607 Methylglyoxal synthase-like domain YPZ3_3290 IPR016193 Cytidine deaminase-like YPZ3_3290 IPR024051 AICAR transformylase, duplicated domain superfamily YPZ3_3291 IPR016185 Pre-ATP-grasp domain superfamily YPZ3_3291 IPR013815 ATP-grasp fold, subdomain 1 YPZ3_3291 IPR011761 ATP-grasp fold YPZ3_3291 IPR000115 Phosphoribosylglycinamide synthetase YPZ3_3291 IPR020560 Phosphoribosylglycinamide synthetase, C-domain YPZ3_3291 IPR011054 Rudiment single hybrid motif YPZ3_3291 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily YPZ3_3291 IPR020559 Phosphoribosylglycinamide synthetase, conserved site YPZ3_3291 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPZ3_3291 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal YPZ3_3292 IPR010858 Protein of unknown function DUF1481 YPZ3_3292 IPR016500 Uncharacterised conserved protein UCP006993 YPZ3_3293 IPR023381 YP001051499.1-like domain superfamily YPZ3_3293 IPR007338 Protein of unknown function DUF416 YPZ3_3294 IPR007581 Endonuclease V YPZ3_3295 IPR000257 Uroporphyrinogen decarboxylase (URO-D) YPZ3_3295 IPR006361 Uroporphyrinogen decarboxylase HemE YPZ3_3295 IPR038071 UROD/MetE-like superfamily YPZ3_3297 IPR020084 NUDIX hydrolase, conserved site YPZ3_3297 IPR000086 NUDIX hydrolase domain YPZ3_3297 IPR015376 Zinc ribbon, NADH pyrophosphatase YPZ3_3297 IPR015797 NUDIX hydrolase-like domain superfamily YPZ3_3297 IPR022925 NADH pyrophosphatase NudC YPZ3_3298 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd YPZ3_3298 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPZ3_3298 IPR038309 Rsd/AlgQ superfamily YPZ3_3299 IPR037509 Phosphomethylpyrimidine synthase YPZ3_3299 IPR038521 ThiC/Bza superfamily YPZ3_3299 IPR025747 ThiC-associated domain YPZ3_3299 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B YPZ3_3300 IPR022998 Thiamine phosphate synthase/TenI YPZ3_3300 IPR013785 Aldolase-type TIM barrel YPZ3_3300 IPR034291 Thiamine phosphate synthase YPZ3_3300 IPR036206 Thiamin phosphate synthase superfamily YPZ3_3301 IPR035985 Ubiquitin-activating enzyme YPZ3_3301 IPR000594 THIF-type NAD/FAD binding fold YPZ3_3301 IPR012731 Thiazole biosynthesis adenylyltransferase ThiF YPZ3_3302 IPR013785 Aldolase-type TIM barrel YPZ3_3302 IPR033983 Thiazole synthase ThiG YPZ3_3302 IPR008867 Thiazole synthase YPZ3_3303 IPR010722 Biotin and thiamin synthesis-associated domain YPZ3_3303 IPR007197 Radical SAM YPZ3_3303 IPR012726 Thiazole biosynthesis ThiH YPZ3_3303 IPR034428 ThiH/NocL/HydG-like YPZ3_3303 IPR013785 Aldolase-type TIM barrel YPZ3_3304 IPR002686 Transposase IS200-like YPZ3_3304 IPR036515 Transposase IS200-like superfamily YPZ3_3305 IPR007083 RNA polymerase Rpb1, domain 4 YPZ3_3305 IPR000722 RNA polymerase, alpha subunit YPZ3_3305 IPR012754 DNA-directed RNA polymerase, subunit beta-prime YPZ3_3305 IPR042102 RNA polymerase Rpb1, domain 3 superfamily YPZ3_3305 IPR007066 RNA polymerase Rpb1, domain 3 YPZ3_3305 IPR007080 RNA polymerase Rpb1, domain 1 YPZ3_3305 IPR006592 RNA polymerase, N-terminal YPZ3_3305 IPR007081 RNA polymerase Rpb1, domain 5 YPZ3_3305 IPR038120 RNA polymerase Rpb1, funnel domain superfamily YPZ3_3306 IPR014724 RNA polymerase Rpb2, OB-fold YPZ3_3306 IPR007641 RNA polymerase Rpb2, domain 7 YPZ3_3306 IPR007645 RNA polymerase Rpb2, domain 3 YPZ3_3306 IPR037034 RNA polymerase Rpb2, domain 2 superfamily YPZ3_3306 IPR007642 RNA polymerase Rpb2, domain 2 YPZ3_3306 IPR007644 RNA polymerase, beta subunit, protrusion YPZ3_3306 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type YPZ3_3306 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain YPZ3_3306 IPR007121 RNA polymerase, beta subunit, conserved site YPZ3_3306 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily YPZ3_3306 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain YPZ3_3306 IPR015712 DNA-directed RNA polymerase, subunit 2 YPZ3_3307 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily YPZ3_3307 IPR008932 Ribosomal protein L7/L12, oligomerisation YPZ3_3307 IPR000206 Ribosomal protein L7/L12 YPZ3_3307 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YPZ3_3307 IPR013823 Ribosomal protein L7/L12, C-terminal YPZ3_3308 IPR001790 Ribosomal protein L10P YPZ3_3308 IPR002363 Ribosomal protein L10, eubacterial, conserved site YPZ3_3308 IPR022973 Ribosomal protein L10 YPZ3_3309 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein YPZ3_3309 IPR023673 Ribosomal protein L1, conserved site YPZ3_3309 IPR005878 Ribosomal protein L1, bacterial-type YPZ3_3309 IPR002143 Ribosomal protein L1 YPZ3_3309 IPR023674 Ribosomal protein L1-like YPZ3_3309 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich YPZ3_3310 IPR006519 Ribosomal protein L11, bacterial-type YPZ3_3310 IPR020784 Ribosomal protein L11, N-terminal YPZ3_3310 IPR020783 Ribosomal protein L11, C-terminal YPZ3_3310 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily YPZ3_3310 IPR020785 Ribosomal protein L11, conserved site YPZ3_3310 IPR036769 Ribosomal protein L11, C-terminal domain superfamily YPZ3_3310 IPR000911 Ribosomal protein L11/L12 YPZ3_3311 IPR005824 KOW YPZ3_3311 IPR006645 NusG, N-terminal YPZ3_3311 IPR036735 NusG, N-terminal domain superfamily YPZ3_3311 IPR014722 Ribosomal protein L2, domain 2 YPZ3_3311 IPR001062 Transcription antitermination protein, NusG YPZ3_3311 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site YPZ3_3311 IPR008991 Translation protein SH3-like domain superfamily YPZ3_3312 IPR005807 SecE subunit of protein translocation complex, bacterial-like YPZ3_3312 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit YPZ3_3312 IPR038379 SecE superfamily YPZ3_3313 IPR009000 Translation protein, beta-barrel domain superfamily YPZ3_3313 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YPZ3_3313 IPR000795 Transcription factor, GTP-binding domain YPZ3_3313 IPR031157 Tr-type G domain, conserved site YPZ3_3313 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YPZ3_3313 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3313 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain YPZ3_3313 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPZ3_3313 IPR033720 Elongation factor Tu, domain 2 YPZ3_3313 IPR004161 Translation elongation factor EFTu-like, domain 2 YPZ3_3313 IPR005225 Small GTP-binding protein domain YPZ3_3314 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3314 IPR001270 ClpA/B family YPZ3_3314 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_3314 IPR003593 AAA+ ATPase domain YPZ3_3314 IPR002611 IstB-like ATP-binding protein YPZ3_3315 IPR017894 HTH domain, IS21 transposase-type YPZ3_3315 IPR001584 Integrase, catalytic core YPZ3_3315 IPR006120 Resolvase, HTH domain YPZ3_3315 IPR036397 Ribonuclease H superfamily YPZ3_3315 IPR012337 Ribonuclease H-like superfamily YPZ3_3316 IPR000182 GNAT domain YPZ3_3316 IPR016181 Acyl-CoA N-acyltransferase YPZ3_3317 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3317 IPR004566 Pantothenate kinase YPZ3_3317 IPR006083 Phosphoribulokinase/uridine kinase YPZ3_3318 IPR013196 Helix-turn-helix, type 11 YPZ3_3318 IPR008988 Transcriptional repressor, C-terminal YPZ3_3318 IPR003142 Biotin protein ligase, C-terminal YPZ3_3318 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_3318 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_3318 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain YPZ3_3318 IPR004409 Biotin operon repressor, helix-turn-helix domain YPZ3_3318 IPR004408 Biotin--acetyl-CoA-carboxylase ligase YPZ3_3318 IPR030855 Bifunctional ligase/repressor BirA YPZ3_3319 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase YPZ3_3319 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal YPZ3_3319 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily YPZ3_3319 IPR006094 FAD linked oxidase, N-terminal YPZ3_3319 IPR016166 FAD-binding domain, PCMH-type YPZ3_3319 IPR036318 FAD-binding, type PCMH-like superfamily YPZ3_3319 IPR016167 FAD-binding, type PCMH, subdomain 1 YPZ3_3319 IPR016169 FAD-binding, type PCMH, subdomain 2 YPZ3_3320 IPR004772 TrkH potassium transport family YPZ3_3320 IPR003445 Cation transporter YPZ3_3321 IPR023582 Impact family YPZ3_3321 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_3321 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal YPZ3_3321 IPR001498 Impact, N-terminal YPZ3_3321 IPR036956 Impact, N-terminal domain superfamily YPZ3_3321 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site YPZ3_3321 IPR015796 Impact family, bacterial/archaeal YPZ3_3321 IPR035647 EF-G domain III/V-like YPZ3_3323 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPZ3_3323 IPR036005 Creatinase/aminopeptidase-like YPZ3_3323 IPR000994 Peptidase M24 YPZ3_3323 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPZ3_3323 IPR022846 Xaa-Pro dipeptidase YPZ3_3324 IPR029045 ClpP/crotonase-like domain superfamily YPZ3_3324 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPZ3_3324 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPZ3_3324 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal YPZ3_3324 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding YPZ3_3324 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site YPZ3_3324 IPR036291 NAD(P)-binding domain superfamily YPZ3_3324 IPR012799 Fatty oxidation complex, alpha subunit FadB YPZ3_3324 IPR001753 Enoyl-CoA hydratase/isomerase YPZ3_3325 IPR020615 Thiolase, acyl-enzyme intermediate active site YPZ3_3325 IPR016039 Thiolase-like YPZ3_3325 IPR002155 Thiolase YPZ3_3325 IPR012805 Acetyl-CoA C-acyltransferase FadA YPZ3_3325 IPR020610 Thiolase, active site YPZ3_3325 IPR020617 Thiolase, C-terminal YPZ3_3325 IPR020616 Thiolase, N-terminal YPZ3_3325 IPR020613 Thiolase, conserved site YPZ3_3326 IPR017938 Riboflavin synthase-like beta-barrel YPZ3_3326 IPR017927 FAD-binding domain, ferredoxin reductase-type YPZ3_3326 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPZ3_3326 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPZ3_3326 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPZ3_3327 IPR002830 UbiD decarboxylyase family YPZ3_3327 IPR023677 UbiD decarboxylyase, bacteria YPZ3_3328 IPR010215 Transcription antitermination protein RfaH YPZ3_3328 IPR036735 NusG, N-terminal domain superfamily YPZ3_3328 IPR006645 NusG, N-terminal YPZ3_3329 IPR001731 Delta-aminolevulinic acid dehydratase YPZ3_3329 IPR030656 Delta-aminolevulinic acid dehydratase, active site YPZ3_3329 IPR013785 Aldolase-type TIM barrel YPZ3_3330 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPZ3_3330 IPR032466 Metal-dependent hydrolase YPZ3_3330 IPR001130 TatD family YPZ3_3330 IPR024918 3'-5' ssDNA/RNA exonuclease TatD YPZ3_3331 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3331 IPR002611 IstB-like ATP-binding protein YPZ3_3331 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_3331 IPR001270 ClpA/B family YPZ3_3331 IPR003593 AAA+ ATPase domain YPZ3_3332 IPR036397 Ribonuclease H superfamily YPZ3_3332 IPR001584 Integrase, catalytic core YPZ3_3332 IPR006120 Resolvase, HTH domain YPZ3_3332 IPR012337 Ribonuclease H-like superfamily YPZ3_3332 IPR017894 HTH domain, IS21 transposase-type YPZ3_3333 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPZ3_3333 IPR001130 TatD family YPZ3_3333 IPR024918 3'-5' ssDNA/RNA exonuclease TatD YPZ3_3333 IPR032466 Metal-dependent hydrolase YPZ3_3334 IPR019820 Sec-independent periplasmic protein translocase, conserved site YPZ3_3334 IPR002033 Sec-independent periplasmic protein translocase TatC YPZ3_3335 IPR018448 Twin-arginine translocation protein TatB YPZ3_3336 IPR010232 Probable protein kinase UbiB YPZ3_3336 IPR011009 Protein kinase-like domain superfamily YPZ3_3336 IPR004147 UbiB domain YPZ3_3337 IPR003033 SCP2 sterol-binding domain YPZ3_3337 IPR036527 SCP2 sterol-binding domain superfamily YPZ3_3337 IPR038989 Ubiquinone biosynthesis protein UbiJ YPZ3_3338 IPR023576 UbiE/COQ5 methyltransferase, conserved site YPZ3_3338 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_3338 IPR004033 UbiE/COQ5 methyltransferase YPZ3_3339 IPR003798 DNA recombination RmuC YPZ3_3340 IPR032816 SNARE associated Golgi protein YPZ3_3340 IPR032818 DedA family YPZ3_3341 IPR003706 CstA, N-terminal domain YPZ3_3341 IPR025299 CstA, C-terminal domain YPZ3_3343 IPR018016 Nucleoside phosphorylase, conserved site YPZ3_3343 IPR010058 Uridine phosphorylase YPZ3_3343 IPR000845 Nucleoside phosphorylase domain YPZ3_3343 IPR035994 Nucleoside phosphorylase superfamily YPZ3_3344 IPR002925 Dienelactone hydrolase YPZ3_3344 IPR029058 Alpha/Beta hydrolase fold YPZ3_3345 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal YPZ3_3345 IPR038071 UROD/MetE-like superfamily YPZ3_3345 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal YPZ3_3345 IPR006276 Cobalamin-independent methionine synthase YPZ3_3346 IPR005119 LysR, substrate-binding YPZ3_3346 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_3346 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_3346 IPR000847 Transcription regulator HTH, LysR YPZ3_3346 IPR037406 HTH-type transcriptional regulator MetR, PBP2 domain YPZ3_3347 IPR004776 Membrane transport protein YPZ3_3348 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPZ3_3348 IPR030395 Glycerophosphodiester phosphodiesterase domain YPZ3_3349 IPR017922 sn-Glycerol-3-phosphate import ATP-binding protein UgpC YPZ3_3349 IPR040582 MalK, OB fold domain YPZ3_3349 IPR008995 Molybdate/tungstate binding, C-terminal YPZ3_3349 IPR003593 AAA+ ATPase domain YPZ3_3349 IPR003439 ABC transporter-like YPZ3_3349 IPR017871 ABC transporter, conserved site YPZ3_3349 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3350 IPR030165 sn-Glycerol-3-phosphate transport system permease protein UgpE YPZ3_3350 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_3350 IPR035906 MetI-like superfamily YPZ3_3351 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_3351 IPR035906 MetI-like superfamily YPZ3_3352 IPR006059 Bacterial extracellular solute-binding protein YPZ3_3352 IPR006061 Solute-binding family 1, conserved site YPZ3_3360 IPR003593 AAA+ ATPase domain YPZ3_3360 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein YPZ3_3360 IPR003439 ABC transporter-like YPZ3_3360 IPR017871 ABC transporter, conserved site YPZ3_3360 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3361 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3361 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal YPZ3_3361 IPR017871 ABC transporter, conserved site YPZ3_3361 IPR003439 ABC transporter-like YPZ3_3361 IPR003593 AAA+ ATPase domain YPZ3_3362 IPR001851 ABC transporter, permease YPZ3_3362 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal YPZ3_3363 IPR001851 ABC transporter, permease YPZ3_3364 IPR028082 Periplasmic binding protein-like I YPZ3_3364 IPR000709 Leu/Ile/Val-binding protein YPZ3_3364 IPR028081 Leucine-binding protein domain YPZ3_3365 IPR032900 PanD regulatory factor PanZ YPZ3_3365 IPR040448 PanZ, acetyltransferase (GNAT) domain YPZ3_3365 IPR016181 Acyl-CoA N-acyltransferase YPZ3_3365 IPR000182 GNAT domain YPZ3_3366 IPR002686 Transposase IS200-like YPZ3_3366 IPR036515 Transposase IS200-like superfamily YPZ3_3367 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria YPZ3_3367 IPR013325 RNA polymerase sigma factor, region 2 YPZ3_3367 IPR007630 RNA polymerase sigma-70 region 4 YPZ3_3367 IPR007627 RNA polymerase sigma-70 region 2 YPZ3_3367 IPR009042 RNA polymerase sigma-70 region 1.2 YPZ3_3367 IPR000943 RNA polymerase sigma-70 YPZ3_3367 IPR014284 RNA polymerase sigma-70 like domain YPZ3_3367 IPR013324 RNA polymerase sigma factor, region 3/4-like YPZ3_3367 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_3368 IPR003838 ABC transporter permease protein domain YPZ3_3368 IPR004513 Cell division protein FtsX YPZ3_3368 IPR040690 FtsX, extracellular domain YPZ3_3369 IPR003593 AAA+ ATPase domain YPZ3_3369 IPR003439 ABC transporter-like YPZ3_3369 IPR017871 ABC transporter, conserved site YPZ3_3369 IPR005286 Cell division protein FtsE, ATP-binding YPZ3_3369 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3370 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3370 IPR013822 Signal recognition particle SRP54, helical bundle YPZ3_3370 IPR004390 Signal-recognition particle receptor FtsY YPZ3_3370 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YPZ3_3370 IPR003593 AAA+ ATPase domain YPZ3_3370 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3370 IPR036225 SRP/SRP receptor, N-terminal YPZ3_3370 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily YPZ3_3370 IPR013822 Signal recognition particle SRP54, helical bundle YPZ3_3370 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily YPZ3_3370 IPR004390 Signal-recognition particle receptor FtsY YPZ3_3370 IPR036225 SRP/SRP receptor, N-terminal YPZ3_3370 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YPZ3_3370 IPR003593 AAA+ ATPase domain YPZ3_3371 IPR004398 RNA methyltransferase, RsmD YPZ3_3371 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_3371 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPZ3_3374 IPR012506 YhhN-like YPZ3_3375 IPR017969 Heavy-metal-associated, conserved site YPZ3_3375 IPR036163 Heavy metal-associated domain superfamily YPZ3_3375 IPR036412 HAD-like superfamily YPZ3_3375 IPR027256 P-type ATPase, subfamily IB YPZ3_3375 IPR023214 HAD superfamily YPZ3_3375 IPR023299 P-type ATPase, cytoplasmic domain N YPZ3_3375 IPR018303 P-type ATPase, phosphorylation site YPZ3_3375 IPR023298 P-type ATPase, transmembrane domain superfamily YPZ3_3375 IPR001757 P-type ATPase YPZ3_3375 IPR008250 P-type ATPase, A domain superfamily YPZ3_3375 IPR006121 Heavy metal-associated domain, HMA YPZ3_3376 IPR022931 Sulfur carrier protein TusA YPZ3_3376 IPR001455 TusA-like domain YPZ3_3376 IPR036868 TusA-like domain superfamily YPZ3_3377 IPR003744 Queuosine precursor transporter YPZ3_3378 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YPZ3_3378 IPR014894 Protein DcrB YPZ3_3379 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPZ3_3379 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_3379 IPR009051 Alpha-helical ferredoxin YPZ3_3379 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit YPZ3_3379 IPR004017 Cysteine-rich domain YPZ3_3380 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YPZ3_3380 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_3380 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit YPZ3_3381 IPR007419 BFD-like [2Fe-2S]-binding domain YPZ3_3381 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily YPZ3_3381 IPR006076 FAD dependent oxidoreductase YPZ3_3381 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_3381 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase YPZ3_3381 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit YPZ3_3382 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPZ3_3382 IPR030395 Glycerophosphodiester phosphodiesterase domain YPZ3_3384 IPR023214 HAD superfamily YPZ3_3384 IPR000150 Cof family YPZ3_3384 IPR036412 HAD-like superfamily YPZ3_3384 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPZ3_3385 IPR029058 Alpha/Beta hydrolase fold YPZ3_3385 IPR022742 Serine aminopeptidase, S33 YPZ3_3386 IPR001123 Amino acid exporter protein, LeuE-type YPZ3_3386 IPR004778 Homoserine/Threonine efflux protein YPZ3_3387 IPR001123 Amino acid exporter protein, LeuE-type YPZ3_3387 IPR004778 Homoserine/Threonine efflux protein YPZ3_3388 IPR010997 HRDC-like superfamily YPZ3_3388 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_3388 IPR018982 RQC domain YPZ3_3388 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain YPZ3_3388 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3388 IPR002121 HRDC domain YPZ3_3388 IPR001650 Helicase, C-terminal YPZ3_3388 IPR011545 DEAD/DEAH box helicase domain YPZ3_3388 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_3388 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial YPZ3_3388 IPR004589 DNA helicase, ATP-dependent, RecQ type YPZ3_3389 IPR036541 Phospholipase A1 superfamily YPZ3_3389 IPR003187 Phospholipase A1 YPZ3_3390 IPR029069 HotDog domain superfamily YPZ3_3390 IPR003736 Phenylacetic acid degradation-related domain YPZ3_3390 IPR006683 Thioesterase domain YPZ3_3391 IPR004626 RarD protein YPZ3_3391 IPR000620 EamA domain YPZ3_3392 IPR004488 Magnesium/cobalt transport protein CorA YPZ3_3392 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB YPZ3_3393 IPR009215 TIM-barrel domain, IGPS-like YPZ3_3393 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPZ3_3393 IPR013785 Aldolase-type TIM barrel YPZ3_3394 IPR008322 Uncharacterised protein family UPF0261 YPZ3_3396 IPR013986 DExx box DNA helicase domain superfamily YPZ3_3396 IPR014017 UvrD-like DNA helicase, C-terminal YPZ3_3396 IPR000212 DNA helicase, UvrD/REP type YPZ3_3396 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3396 IPR014016 UvrD-like helicase, ATP-binding domain YPZ3_3396 IPR034739 UvrD/AddA helicase, N-terminal YPZ3_3396 IPR005753 DNA helicase, ATP-dependent, UvrD type YPZ3_3397 IPR006439 HAD hydrolase, subfamily IA YPZ3_3397 IPR041492 Haloacid dehalogenase-like hydrolase YPZ3_3397 IPR023214 HAD superfamily YPZ3_3397 IPR036412 HAD-like superfamily YPZ3_3398 IPR023009 Tyrosine recombinase XerC/XerD YPZ3_3398 IPR011931 Tyrosine recombinase XerC YPZ3_3398 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPZ3_3398 IPR013762 Integrase-like, catalytic domain superfamily YPZ3_3398 IPR004107 Integrase, SAM-like, N-terminal YPZ3_3398 IPR002104 Integrase, catalytic domain YPZ3_3398 IPR010998 Integrase/recombinase, N-terminal YPZ3_3399 IPR029016 GAF-like domain superfamily YPZ3_3399 IPR007435 Protein of unknown function DUF484 YPZ3_3400 IPR018510 Diaminopimelate epimerase, active site YPZ3_3400 IPR001653 Diaminopimelate epimerase, DapF YPZ3_3401 IPR002908 Frataxin/CyaY YPZ3_3401 IPR036524 Frataxin/CyaY superfamily YPZ3_3401 IPR020895 Frataxin conserved site YPZ3_3402 IPR024686 Adenylate cyclase class-I, conserved site YPZ3_3402 IPR000274 Adenylate cyclase, class-I YPZ3_3402 IPR024685 Adenylate cyclase class-I, N-terminal domain YPZ3_3403 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily YPZ3_3403 IPR022418 Porphobilinogen deaminase, C-terminal YPZ3_3403 IPR000860 Porphobilinogen deaminase YPZ3_3403 IPR022417 Porphobilinogen deaminase, N-terminal YPZ3_3403 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site YPZ3_3404 IPR039793 Uroporphyrinogen-III synthase YPZ3_3404 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase YPZ3_3404 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily YPZ3_3405 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX YPZ3_3406 IPR019734 Tetratricopeptide repeat YPZ3_3406 IPR013105 Tetratricopeptide repeat 2 YPZ3_3406 IPR011990 Tetratricopeptide-like helical domain superfamily YPZ3_3406 IPR005254 Heme biosynthesis-associated TPR protein YPZ3_3406 IPR010817 HemY, N-terminal YPZ3_3406 IPR013026 Tetratricopeptide repeat-containing domain YPZ3_3408 IPR004840 Amino acid permease, conserved site YPZ3_3408 IPR004841 Amino acid permease/ SLC12A domain YPZ3_3409 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase YPZ3_3409 IPR004629 Glycosyl transferase WecB/TagA/CpsF YPZ3_3410 IPR010691 Probable ECA polymerase WzyE YPZ3_3411 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase YPZ3_3412 IPR032896 Lipid III flippase WzxE YPZ3_3412 IPR002797 Polysaccharide biosynthesis protein YPZ3_3413 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_3413 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like YPZ3_3413 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_3413 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPZ3_3413 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPZ3_3413 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE YPZ3_3414 IPR020683 Ankyrin repeat-containing domain YPZ3_3414 IPR002110 Ankyrin repeat YPZ3_3414 IPR016181 Acyl-CoA N-acyltransferase YPZ3_3414 IPR012752 dTDP-fucosamine acetyltransferase WecD YPZ3_3414 IPR000182 GNAT domain YPZ3_3415 IPR029044 Nucleotide-diphospho-sugar transferases YPZ3_3415 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form YPZ3_3415 IPR005835 Nucleotidyl transferase domain YPZ3_3416 IPR005888 dTDP-glucose 4,6-dehydratase YPZ3_3416 IPR016040 NAD(P)-binding domain YPZ3_3416 IPR036291 NAD(P)-binding domain superfamily YPZ3_3417 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal YPZ3_3417 IPR017476 UDP-glucose/GDP-mannose dehydrogenase YPZ3_3417 IPR036291 NAD(P)-binding domain superfamily YPZ3_3417 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPZ3_3417 IPR032891 UDP-N-acetyl-D-mannosamine dehydrogenase WecC YPZ3_3417 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase YPZ3_3417 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal YPZ3_3417 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily YPZ3_3417 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation YPZ3_3418 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like YPZ3_3418 IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB YPZ3_3418 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain YPZ3_3419 IPR003856 Polysaccharide chain length determinant N-terminal domain YPZ3_3419 IPR032895 ECA polysaccharide chain length modulation protein WzzE YPZ3_3420 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YPZ3_3420 IPR000715 Glycosyl transferase, family 4 YPZ3_3421 IPR004665 Transcription termination factor Rho YPZ3_3421 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPZ3_3421 IPR011129 Cold shock domain YPZ3_3421 IPR012340 Nucleic acid-binding, OB-fold YPZ3_3421 IPR003593 AAA+ ATPase domain YPZ3_3421 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3421 IPR041703 Transcription termination factor Rho, ATP binding domain YPZ3_3421 IPR011112 Rho termination factor, N-terminal YPZ3_3421 IPR036269 Rho termination factor, N-terminal domain superfamily YPZ3_3421 IPR011113 Rho termination factor, RNA-binding domain YPZ3_3422 IPR013766 Thioredoxin domain YPZ3_3422 IPR036249 Thioredoxin-like superfamily YPZ3_3422 IPR017937 Thioredoxin, conserved site YPZ3_3422 IPR005746 Thioredoxin YPZ3_3423 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3423 IPR011545 DEAD/DEAH box helicase domain YPZ3_3423 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_3423 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPZ3_3423 IPR001650 Helicase, C-terminal YPZ3_3423 IPR023554 ATP-dependent RNA helicase RhlB type YPZ3_3423 IPR014014 RNA helicase, DEAD-box type, Q motif YPZ3_3424 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase YPZ3_3424 IPR022371 Exopolyphosphatase YPZ3_3424 IPR003695 Ppx/GppA phosphatase YPZ3_3424 IPR030673 Pyrophosphatase, GppA/Ppx-type YPZ3_3425 IPR013986 DExx box DNA helicase domain superfamily YPZ3_3425 IPR014017 UvrD-like DNA helicase, C-terminal YPZ3_3425 IPR034739 UvrD/AddA helicase, N-terminal YPZ3_3425 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3425 IPR005752 ATP-dependent DNA helicase Rep YPZ3_3425 IPR000212 DNA helicase, UvrD/REP type YPZ3_3425 IPR014016 UvrD-like helicase, ATP-binding domain YPZ3_3427 IPR001207 Transposase, mutator type YPZ3_3429 IPR016148 Pili assembly chaperone, C-terminal YPZ3_3429 IPR018046 Pili assembly chaperone, conserved site YPZ3_3429 IPR001829 Pili assembly chaperone, bacterial YPZ3_3429 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPZ3_3429 IPR008962 PapD-like superfamily YPZ3_3429 IPR013783 Immunoglobulin-like fold YPZ3_3429 IPR016147 Pili assembly chaperone, N-terminal YPZ3_3430 IPR000015 Outer membrane usher protein YPZ3_3430 IPR018030 Fimbrial membrane usher, conserved site YPZ3_3430 IPR037224 PapC, N-terminal domain superfamily YPZ3_3430 IPR025885 PapC, N-terminal domain YPZ3_3430 IPR025949 PapC-like, C-terminal domain YPZ3_3430 IPR042186 Outer membrane usher protein FimD, plug domain YPZ3_3432 IPR001829 Pili assembly chaperone, bacterial YPZ3_3432 IPR018046 Pili assembly chaperone, conserved site YPZ3_3432 IPR008962 PapD-like superfamily YPZ3_3432 IPR016147 Pili assembly chaperone, N-terminal YPZ3_3432 IPR013783 Immunoglobulin-like fold YPZ3_3432 IPR016148 Pili assembly chaperone, C-terminal YPZ3_3432 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPZ3_3434 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPZ3_3434 IPR013023 Ketol-acid reductoisomerase YPZ3_3434 IPR000506 Ketol-acid reductoisomerase, C-terminal YPZ3_3434 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPZ3_3434 IPR013116 Ketol-acid reductoisomerase, N-terminal YPZ3_3434 IPR036291 NAD(P)-binding domain superfamily YPZ3_3435 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_3435 IPR037404 HTH-type transcriptional activator IlvY, PBP2 domain YPZ3_3435 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_3435 IPR005119 LysR, substrate-binding YPZ3_3435 IPR000847 Transcription regulator HTH, LysR YPZ3_3439 IPR005787 Threonine dehydratase, biosynthetic YPZ3_3439 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPZ3_3439 IPR001926 Pyridoxal-phosphate dependent enzyme YPZ3_3439 IPR038110 Threonine dehydratase, ACT-like domain superfamily YPZ3_3439 IPR001721 Threonine dehydratase, ACT-like domain YPZ3_3439 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPZ3_3440 IPR037237 IlvD/EDD, N-terminal domain YPZ3_3440 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site YPZ3_3440 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase YPZ3_3440 IPR004404 Dihydroxy-acid dehydratase YPZ3_3440 IPR042096 Dihydroxy-acid dehydratase, C-terminal YPZ3_3441 IPR036038 Aminotransferase-like, PLP-dependent enzymes YPZ3_3441 IPR018300 Aminotransferase, class IV, conserved site YPZ3_3441 IPR005785 Branched-chain amino acid aminotransferase I YPZ3_3441 IPR033939 Branched-chain aminotransferase YPZ3_3441 IPR001544 Aminotransferase class IV YPZ3_3442 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPZ3_3442 IPR029061 Thiamin diphosphate-binding fold YPZ3_3442 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPZ3_3442 IPR012000 Thiamine pyrophosphate enzyme, central domain YPZ3_3442 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPZ3_3442 IPR000399 TPP-binding enzyme, conserved site YPZ3_3442 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPZ3_3442 IPR039368 Acetolactate synthase large subunit, TPP binding domain YPZ3_3443 IPR003593 AAA+ ATPase domain YPZ3_3443 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPZ3_3443 IPR000523 Magnesium chelatase ChlI domain YPZ3_3443 IPR025158 Mg chelatase-related protein, C-terminal domain YPZ3_3443 IPR004482 Mg chelatase-related protein YPZ3_3443 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3443 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_3444 IPR007335 Protein of unknown function DUF413 YPZ3_3445 IPR000847 Transcription regulator HTH, LysR YPZ3_3445 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_3445 IPR005119 LysR, substrate-binding YPZ3_3445 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_3445 IPR020890 Transcription regulator HTH, HdfR YPZ3_3446 IPR001851 ABC transporter, permease YPZ3_3447 IPR001851 ABC transporter, permease YPZ3_3448 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3448 IPR017871 ABC transporter, conserved site YPZ3_3448 IPR003439 ABC transporter-like YPZ3_3448 IPR003593 AAA+ ATPase domain YPZ3_3449 IPR028082 Periplasmic binding protein-like I YPZ3_3449 IPR033893 ABC transporter periplasmic-binding protein YtfQ YPZ3_3449 IPR025997 Periplasmic binding protein YPZ3_3450 IPR033134 Asp/Glu racemase, active site 2 YPZ3_3450 IPR018187 Asp/Glu racemase, active site 1 YPZ3_3450 IPR001920 Asp/Glu racemase YPZ3_3450 IPR004391 Glutamate racemase YPZ3_3450 IPR015942 Asp/Glu/hydantoin racemase YPZ3_3451 IPR012910 TonB-dependent receptor, plug domain YPZ3_3451 IPR039426 Vitamin B12 transporter BtuB-like YPZ3_3451 IPR000531 TonB-dependent receptor-like, beta-barrel YPZ3_3451 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPZ3_3451 IPR010917 TonB-dependent receptor, conserved site YPZ3_3451 IPR010101 TonB-dependent vitamin B12 transporter BtuB YPZ3_3451 IPR037066 TonB-dependent receptor, plug domain superfamily YPZ3_3452 IPR030391 RNA methyltransferase TrmA, conserved site YPZ3_3452 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_3452 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA YPZ3_3452 IPR010280 (Uracil-5)-methyltransferase family YPZ3_3452 IPR030390 RNA methyltransferase TrmA, active site YPZ3_3453 IPR009867 Protein of unknown function DUF1422 YPZ3_3454 IPR001647 DNA-binding HTH domain, TetR-type YPZ3_3454 IPR009057 Homeobox-like domain superfamily YPZ3_3454 IPR023764 Transcriptional repressor HTH, FabR YPZ3_3455 IPR022962 Soluble pyridine nucleotide transhydrogenase YPZ3_3455 IPR023753 FAD/NAD(P)-binding domain YPZ3_3455 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_3455 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPZ3_3455 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YPZ3_3455 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPZ3_3456 IPR005119 LysR, substrate-binding YPZ3_3456 IPR000847 Transcription regulator HTH, LysR YPZ3_3456 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_3456 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_3457 IPR037944 Peroxiredoxin-5-like YPZ3_3457 IPR013740 Redoxin YPZ3_3457 IPR036249 Thioredoxin-like superfamily YPZ3_3457 IPR002109 Glutaredoxin YPZ3_3457 IPR011767 Glutaredoxin active site YPZ3_3457 IPR011906 Glutaredoxin domain YPZ3_3457 IPR014025 Glutaredoxin subgroup YPZ3_3458 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YPZ3_3458 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPZ3_3458 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YPZ3_3458 IPR006258 Dihydrolipoamide dehydrogenase YPZ3_3458 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_3458 IPR023753 FAD/NAD(P)-binding domain YPZ3_3458 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPZ3_3459 IPR006260 TonB/TolA, C-terminal YPZ3_3459 IPR037682 TonB, C-terminal YPZ3_3460 IPR010129 Type I secretion membrane fusion protein, HlyD family YPZ3_3460 IPR006144 Secretion protein HlyD, conserved site YPZ3_3461 IPR011527 ABC transporter type 1, transmembrane domain YPZ3_3461 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPZ3_3461 IPR003439 ABC transporter-like YPZ3_3461 IPR017871 ABC transporter, conserved site YPZ3_3461 IPR010128 ATPase, type I secretion system, PrtD YPZ3_3461 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3461 IPR003593 AAA+ ATPase domain YPZ3_3463 IPR000531 TonB-dependent receptor-like, beta-barrel YPZ3_3463 IPR037066 TonB-dependent receptor, plug domain superfamily YPZ3_3463 IPR012910 TonB-dependent receptor, plug domain YPZ3_3463 IPR039426 Vitamin B12 transporter BtuB-like YPZ3_3463 IPR011276 TonB-dependent haem/haemoglobin receptor YPZ3_3463 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor YPZ3_3463 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPZ3_3464 IPR020557 Fumarate lyase, conserved site YPZ3_3464 IPR029419 Argininosuccinate lyase, C-terminal YPZ3_3464 IPR009049 Argininosuccinate lyase YPZ3_3464 IPR024083 Fumarase/histidase, N-terminal YPZ3_3464 IPR000362 Fumarate lyase family YPZ3_3464 IPR022761 Fumarate lyase, N-terminal YPZ3_3464 IPR008948 L-Aspartase-like YPZ3_3465 IPR041731 N-Acetyl-L-glutamate kinase, noncyclic YPZ3_3465 IPR037528 Acetylglutamate kinase ArgB YPZ3_3465 IPR004662 Acetylglutamate kinase family YPZ3_3465 IPR036393 Acetylglutamate kinase-like superfamily YPZ3_3465 IPR001048 Aspartate/glutamate/uridylate kinase YPZ3_3466 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 YPZ3_3466 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site YPZ3_3466 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPZ3_3466 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPZ3_3466 IPR036291 NAD(P)-binding domain superfamily YPZ3_3467 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPZ3_3467 IPR036264 Bacterial exopeptidase dimerisation domain YPZ3_3467 IPR002933 Peptidase M20 YPZ3_3467 IPR010169 Acetylornithine deacetylase ArgE YPZ3_3467 IPR011650 Peptidase M20, dimerisation domain YPZ3_3468 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site YPZ3_3468 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPZ3_3468 IPR033129 Phosphoenolpyruvate carboxylase, His active site YPZ3_3468 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type YPZ3_3468 IPR021135 Phosphoenolpyruvate carboxylase YPZ3_3470 IPR012337 Ribonuclease H-like superfamily YPZ3_3470 IPR001584 Integrase, catalytic core YPZ3_3470 IPR025948 HTH-like domain YPZ3_3470 IPR038965 Transposase InsF-like YPZ3_3470 IPR036397 Ribonuclease H superfamily YPZ3_3471 IPR011701 Major facilitator superfamily YPZ3_3471 IPR020846 Major facilitator superfamily domain YPZ3_3471 IPR036259 MFS transporter superfamily YPZ3_3474 IPR002513 Tn3 transposase DDE domain YPZ3_3474 IPR025296 Domain of unknown function DUF4158 YPZ3_3475 IPR015191 Translation elongation factor SelB, winged helix, type 3 YPZ3_3475 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPZ3_3475 IPR004535 Translation elongation factor, selenocysteine-specific YPZ3_3475 IPR036390 Winged helix DNA-binding domain superfamily YPZ3_3475 IPR004161 Translation elongation factor EFTu-like, domain 2 YPZ3_3475 IPR015190 Translation elongation factor SelB, winged helix, type 2 YPZ3_3475 IPR009000 Translation protein, beta-barrel domain superfamily YPZ3_3475 IPR036388 Winged helix-like DNA-binding domain superfamily YPZ3_3475 IPR000795 Transcription factor, GTP-binding domain YPZ3_3475 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3475 IPR031157 Tr-type G domain, conserved site YPZ3_3476 IPR004534 L-seryl-tRNA(Sec) selenium transferase YPZ3_3476 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain YPZ3_3476 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_3476 IPR018319 L-seryl-tRNA selenium transferase-like YPZ3_3476 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_3477 IPR006452 Formate dehydrogenase accessory protein YPZ3_3477 IPR024064 FdhE-like superfamily YPZ3_3478 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPZ3_3478 IPR016174 Di-haem cytochrome, transmembrane YPZ3_3478 IPR006471 Formate dehydrogenase, gamma subunit YPZ3_3479 IPR015246 Formate dehydrogenase, transmembrane YPZ3_3479 IPR014603 Formate dehydrogenase iron-sulphur subunit YPZ3_3479 IPR038384 Formate dehydrogenase, C-terminal domain superfamily YPZ3_3479 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria YPZ3_3479 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPZ3_3479 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPZ3_3480 IPR006443 Formate dehydrogenase-N, alpha subunit YPZ3_3480 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPZ3_3480 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPZ3_3480 IPR006657 Molybdopterin dinucleotide-binding domain YPZ3_3480 IPR009010 Aspartate decarboxylase-like domain superfamily YPZ3_3480 IPR006656 Molybdopterin oxidoreductase YPZ3_3480 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPZ3_3480 IPR006311 Twin-arginine translocation pathway, signal sequence YPZ3_3481 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPZ3_3481 IPR006657 Molybdopterin dinucleotide-binding domain YPZ3_3481 IPR006311 Twin-arginine translocation pathway, signal sequence YPZ3_3481 IPR009010 Aspartate decarboxylase-like domain superfamily YPZ3_3481 IPR006656 Molybdopterin oxidoreductase YPZ3_3481 IPR006443 Formate dehydrogenase-N, alpha subunit YPZ3_3481 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPZ3_3481 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPZ3_3482 IPR016193 Cytidine deaminase-like YPZ3_3482 IPR003786 Sulfur carrier protein FdhD YPZ3_3483 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily YPZ3_3483 IPR019831 Manganese/iron superoxide dismutase, N-terminal YPZ3_3483 IPR019832 Manganese/iron superoxide dismutase, C-terminal YPZ3_3483 IPR019833 Manganese/iron superoxide dismutase, binding site YPZ3_3483 IPR001189 Manganese/iron superoxide dismutase YPZ3_3483 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily YPZ3_3484 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPZ3_3484 IPR003660 HAMP domain YPZ3_3484 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPZ3_3484 IPR004090 Chemotaxis methyl-accepting receptor YPZ3_3484 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_3484 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPZ3_3487 IPR021230 Protein of unknown function DUF2810 YPZ3_3488 IPR038026 MtlR-like superfamily YPZ3_3488 IPR007761 Mannitol repressor MtlR-like YPZ3_3489 IPR036291 NAD(P)-binding domain superfamily YPZ3_3489 IPR013131 Mannitol dehydrogenase, N-terminal YPZ3_3489 IPR023027 Mannitol dehydrogenase, conserved site YPZ3_3489 IPR013118 Mannitol dehydrogenase, C-terminal YPZ3_3489 IPR000669 Mannitol dehydrogenase YPZ3_3489 IPR023028 Mannitol-1-phosphate 5-dehydrogenase YPZ3_3489 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPZ3_3489 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPZ3_3490 IPR016152 Phosphotransferase/anion transporter YPZ3_3490 IPR013011 Phosphotransferase system, EIIB component, type 2 YPZ3_3490 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC YPZ3_3490 IPR003352 Phosphotransferase system, EIIC YPZ3_3490 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPZ3_3490 IPR036095 PTS system IIB component-like superfamily YPZ3_3490 IPR029503 Phosphotransferase system EIIB component, mannitol-specific YPZ3_3490 IPR002178 PTS EIIA type-2 domain YPZ3_3490 IPR013014 Phosphotransferase system, EIIC component, type 2 YPZ3_3491 IPR021413 Protein of unknown function DUF3053 YPZ3_3492 IPR015944 Glycine-tRNA ligase, beta subunit YPZ3_3492 IPR006194 Glycine-tRNA synthetase, heterodimeric YPZ3_3492 IPR008909 DALR anticodon binding YPZ3_3493 IPR006194 Glycine-tRNA synthetase, heterodimeric YPZ3_3493 IPR002310 Glycine-tRNA ligase, alpha subunit YPZ3_3494 IPR004597 DNA-3-methyladenine glycosylase I YPZ3_3494 IPR011257 DNA glycosylase YPZ3_3494 IPR005019 Methyladenine glycosylase YPZ3_3496 IPR006690 Outer membrane protein, OmpA-like, conserved site YPZ3_3496 IPR006664 Outer membrane protein, bacterial YPZ3_3496 IPR036737 OmpA-like domain superfamily YPZ3_3496 IPR006665 OmpA-like domain YPZ3_3496 IPR039567 Glycine zipper domain YPZ3_3498 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_3498 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPZ3_3498 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPZ3_3498 IPR023756 Glyoxylate/hydroxypyruvate reductase B YPZ3_3498 IPR036291 NAD(P)-binding domain superfamily YPZ3_3498 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPZ3_3499 IPR014635 Alpha-amylase, MalS type YPZ3_3499 IPR017853 Glycoside hydrolase superfamily YPZ3_3499 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPZ3_3501 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPZ3_3501 IPR015424 Pyridoxal phosphate-dependent transferase YPZ3_3501 IPR004839 Aminotransferase, class I/classII YPZ3_3502 IPR006037 Regulator of K+ conductance, C-terminal YPZ3_3502 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YPZ3_3502 IPR023018 Transport protein YidE, putative YPZ3_3502 IPR006512 YidE/YbjL duplication YPZ3_3503 IPR037913 Small heat shock protein IbpA/IbpB, ACD domain YPZ3_3503 IPR008978 HSP20-like chaperone YPZ3_3503 IPR002068 Alpha crystallin/Hsp20 domain YPZ3_3503 IPR022848 Small heat shock protein IbpB YPZ3_3504 IPR002068 Alpha crystallin/Hsp20 domain YPZ3_3504 IPR023728 Small heat shock protein IbpA YPZ3_3504 IPR037913 Small heat shock protein IbpA/IbpB, ACD domain YPZ3_3504 IPR008978 HSP20-like chaperone YPZ3_3505 IPR010780 Protein of unknown function DUF1375 YPZ3_3506 IPR011042 Six-bladed beta-propeller, TolB-like YPZ3_3506 IPR022223 Protein of unknown function DUF3748 YPZ3_3506 IPR011659 WD40-like Beta Propeller YPZ3_3507 IPR011042 Six-bladed beta-propeller, TolB-like YPZ3_3507 IPR022223 Protein of unknown function DUF3748 YPZ3_3507 IPR011659 WD40-like Beta Propeller YPZ3_3508 IPR005789 Threonine dehydratase, catabolic YPZ3_3508 IPR001926 Pyridoxal-phosphate dependent enzyme YPZ3_3508 IPR002912 ACT domain YPZ3_3508 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPZ3_3508 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPZ3_3509 IPR023401 Ornithine cyclodeaminase, N-terminal YPZ3_3509 IPR003462 Ornithine cyclodeaminase/mu-crystallin YPZ3_3509 IPR036291 NAD(P)-binding domain superfamily YPZ3_3509 IPR014334 Ectoine utilization protein EutC YPZ3_3511 IPR036397 Ribonuclease H superfamily YPZ3_3511 IPR038965 Transposase InsF-like YPZ3_3511 IPR025948 HTH-like domain YPZ3_3511 IPR001584 Integrase, catalytic core YPZ3_3511 IPR012337 Ribonuclease H-like superfamily YPZ3_3512 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPZ3_3512 IPR036412 HAD-like superfamily YPZ3_3512 IPR000150 Cof family YPZ3_3512 IPR023214 HAD superfamily YPZ3_3513 IPR011557 DNA gyrase, subunit B YPZ3_3513 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal YPZ3_3513 IPR018522 DNA topoisomerase, type IIA, conserved site YPZ3_3513 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YPZ3_3513 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 YPZ3_3513 IPR006171 TOPRIM domain YPZ3_3513 IPR002288 DNA gyrase B subunit, C-terminal YPZ3_3513 IPR020568 Ribosomal protein S5 domain 2-type fold YPZ3_3513 IPR001241 DNA topoisomerase, type IIA YPZ3_3513 IPR034160 DNA gyrase subunit B, TOPRIM domain YPZ3_3513 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPZ3_3513 IPR041423 DNA gyrase subunit B insert domain YPZ3_3513 IPR003594 Histidine kinase/HSP90-like ATPase YPZ3_3513 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPZ3_3514 IPR001238 DNA-binding, RecF YPZ3_3514 IPR042174 DNA-binding RecF, domain 2 YPZ3_3514 IPR003395 RecF/RecN/SMC, N-terminal YPZ3_3514 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3514 IPR018078 DNA-binding, RecF, conserved site YPZ3_3515 IPR001001 DNA polymerase III, beta sliding clamp YPZ3_3515 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal YPZ3_3515 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal YPZ3_3515 IPR022637 DNA polymerase III, beta sliding clamp, central YPZ3_3516 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3516 IPR010921 Trp repressor/replication initiator YPZ3_3516 IPR013159 Chromosomal replication initiator, DnaA C-terminal YPZ3_3516 IPR013317 Chromosomal replication initiator protein DnaA YPZ3_3516 IPR018312 Chromosomal replication control, initiator DnaA, conserved site YPZ3_3516 IPR020591 Chromosomal replication control, initiator DnaA-like YPZ3_3516 IPR001957 Chromosomal replication control, initiator DnaA YPZ3_3516 IPR003593 AAA+ ATPase domain YPZ3_3516 IPR038454 DnaA, N-terminal domain superfamily YPZ3_3516 IPR024633 DnaA N-terminal domain YPZ3_3517 IPR028055 Membrane insertase YidC/Oxa1, C-terminal YPZ3_3517 IPR038221 YidC, periplasmic domain superfamily YPZ3_3517 IPR038210 Membrane insertase YidC, periplasmic domain YPZ3_3517 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 YPZ3_3517 IPR028053 Membrane insertase YidC, N-terminal YPZ3_3517 IPR019998 Membrane insertase YidC YPZ3_3518 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 YPZ3_3518 IPR025867 MnmE, helical domain YPZ3_3518 IPR027368 tRNA modification GTPase MnmE domain 2 YPZ3_3518 IPR004520 tRNA modification GTPase MnmE YPZ3_3518 IPR006073 GTP binding domain YPZ3_3518 IPR018948 GTP-binding protein TrmE, N-terminal YPZ3_3518 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3518 IPR005225 Small GTP-binding protein domain YPZ3_3518 IPR031168 TrmE-type guanine nucleotide-binding domain YPZ3_3519 IPR024906 Enoyl reductase FAD binding domain YPZ3_3519 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative YPZ3_3519 IPR010758 Trans-2-enoyl-CoA reductase YPZ3_3521 IPR026033 Azaguanine-like transporters YPZ3_3521 IPR006043 Xanthine/uracil/vitamin C permease YPZ3_3522 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPZ3_3522 IPR023214 HAD superfamily YPZ3_3522 IPR041492 Haloacid dehalogenase-like hydrolase YPZ3_3522 IPR006439 HAD hydrolase, subfamily IA YPZ3_3522 IPR036412 HAD-like superfamily YPZ3_3523 IPR035906 MetI-like superfamily YPZ3_3523 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_3523 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPZ3_3524 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_3524 IPR035906 MetI-like superfamily YPZ3_3524 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPZ3_3525 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPZ3_3525 IPR001320 Ionotropic glutamate receptor YPZ3_3525 IPR018313 Solute-binding protein family 3, conserved site YPZ3_3525 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPZ3_3527 IPR038078 PhoU-like domain superfamily YPZ3_3527 IPR026022 PhoU domain YPZ3_3527 IPR028366 Phosphate transport system protein PhoU YPZ3_3528 IPR003593 AAA+ ATPase domain YPZ3_3528 IPR003439 ABC transporter-like YPZ3_3528 IPR017871 ABC transporter, conserved site YPZ3_3528 IPR015850 ABC transporter, phosphate import, PstB YPZ3_3528 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3528 IPR005670 Phosphate transport system permease protein 1 YPZ3_3529 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_3529 IPR035906 MetI-like superfamily YPZ3_3529 IPR005672 Phosphate transport system permease protein PstA YPZ3_3530 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPZ3_3530 IPR035906 MetI-like superfamily YPZ3_3530 IPR011864 Phosphate ABC transporter, permease protein PstC YPZ3_3531 IPR024370 PBP domain YPZ3_3531 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS YPZ3_3532 IPR001347 Sugar isomerase (SIS) YPZ3_3532 IPR029055 Nucleophile aminohydrolases, N-terminal YPZ3_3532 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising YPZ3_3532 IPR017932 Glutamine amidotransferase type 2 domain YPZ3_3532 IPR035490 GlmS/FrlB, SIS domain 2 YPZ3_3532 IPR035466 GlmS/AgaS, SIS domain 1 YPZ3_3533 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase YPZ3_3533 IPR025877 MobA-like NTP transferase YPZ3_3533 IPR011004 Trimeric LpxA-like superfamily YPZ3_3533 IPR018357 Hexapeptide transferase, conserved site YPZ3_3533 IPR029044 Nucleotide-diphospho-sugar transferases YPZ3_3533 IPR001451 Hexapeptide repeat YPZ3_3533 IPR038009 GlmU, C-terminal LbH domain YPZ3_3534 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal YPZ3_3534 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal YPZ3_3534 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain YPZ3_3534 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit YPZ3_3534 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily YPZ3_3535 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3535 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal YPZ3_3535 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPZ3_3535 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily YPZ3_3535 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain YPZ3_3535 IPR003593 AAA+ ATPase domain YPZ3_3535 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPZ3_3535 IPR005722 ATP synthase, F1 complex, beta subunit YPZ3_3536 IPR000131 ATP synthase, F1 complex, gamma subunit YPZ3_3536 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site YPZ3_3536 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily YPZ3_3537 IPR005294 ATP synthase, F1 complex, alpha subunit YPZ3_3537 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_3537 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPZ3_3537 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily YPZ3_3537 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain YPZ3_3537 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPZ3_3537 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily YPZ3_3537 IPR000793 ATP synthase, alpha subunit, C-terminal YPZ3_3537 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily YPZ3_3537 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain YPZ3_3538 IPR020781 ATPase, OSCP/delta subunit, conserved site YPZ3_3538 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily YPZ3_3538 IPR000711 ATPase, OSCP/delta subunit YPZ3_3539 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily YPZ3_3539 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast YPZ3_3539 IPR005864 ATP synthase, F0 complex, subunit b, bacterial YPZ3_3540 IPR023011 ATP synthase, F0 complex, subunit A, active site YPZ3_3540 IPR035908 ATP synthase, F0 complex, subunit A superfamily YPZ3_3540 IPR000568 ATP synthase, F0 complex, subunit A YPZ3_3541 IPR005598 ATP synthase protein I YPZ3_3542 IPR003682 rRNA small subunit methyltransferase G YPZ3_3542 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_3543 IPR036188 FAD/NAD(P)-binding domain superfamily YPZ3_3543 IPR026904 GidA associated domain 3 YPZ3_3543 IPR020595 MnmG-related, conserved site YPZ3_3543 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG YPZ3_3543 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related YPZ3_pCD0001 IPR025948 HTH-like domain YPZ3_pCD0001 IPR001584 Integrase, catalytic core YPZ3_pCD0001 IPR012337 Ribonuclease H-like superfamily YPZ3_pCD0001 IPR036397 Ribonuclease H superfamily YPZ3_pCD0002 IPR010261 Tir chaperone protein (CesT) family YPZ3_pCD0002 IPR005416 Type III secretion chaperone SycE YPZ3_pCD0003 IPR014773 Virulence factor YopE, GAP domain YPZ3_pCD0003 IPR015110 YopE, N-terminal domain YPZ3_pCD0003 IPR003537 Yersinia virulence determinant YopE YPZ3_pCD0003 IPR037168 Virulence factor YopE, GAP domain superfamily YPZ3_pCD0005 IPR040873 SopB, HTH domain YPZ3_pCD0005 IPR003115 ParB/Sulfiredoxin YPZ3_pCD0005 IPR036086 ParB/Sulfiredoxin superfamily YPZ3_pCD0005 IPR004437 ParB/RepB/Spo0J partition protein YPZ3_pCD0006 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_pCD0006 IPR025669 AAA domain YPZ3_pCD0007 IPR025948 HTH-like domain YPZ3_pCD0007 IPR001584 Integrase, catalytic core YPZ3_pCD0007 IPR012337 Ribonuclease H-like superfamily YPZ3_pCD0007 IPR036397 Ribonuclease H superfamily YPZ3_pCD0009 IPR008874 Enterobacterial TraT complement resistance YPZ3_pCD0010 IPR016505 Type III secretion system YopQ YPZ3_pCD0011 IPR006473 Peptidase C58, YopT-type domain YPZ3_pCD0011 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen YPZ3_pCD0011 IPR038765 Papain-like cysteine peptidase superfamily YPZ3_pCD0012 IPR010261 Tir chaperone protein (CesT) family YPZ3_pCD0015 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPZ3_pCD0015 IPR032675 Leucine-rich repeat domain superfamily YPZ3_pCD0015 IPR001611 Leucine-rich repeat YPZ3_pCD0016 IPR032874 DDE domain YPZ3_pCD0017 IPR008898 YopD-like YPZ3_pCD0018 IPR006972 Secretion system effector C, SseC-like YPZ3_pCD0019 IPR011990 Tetratricopeptide-like helical domain superfamily YPZ3_pCD0019 IPR013026 Tetratricopeptide repeat-containing domain YPZ3_pCD0019 IPR011716 Tetratricopeptide TPR-3 YPZ3_pCD0019 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD YPZ3_pCD0019 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup YPZ3_pCD0020 IPR036139 Virulence-associated V antigen superfamily YPZ3_pCD0020 IPR005413 Low calcium response V antigen YPZ3_pCD0021 IPR022797 Type III secretion system regulator LcrR/Chaperone CesD2 YPZ3_pCD0021 IPR013405 Type III secretion system regulator, LcrR YPZ3_pCD0022 IPR042196 FHIPEP, domain 4 YPZ3_pCD0022 IPR006302 Type III secretion protein HrcV YPZ3_pCD0022 IPR001712 Type III secretion system FHIPEP YPZ3_pCD0022 IPR025505 FHIPEP conserved site YPZ3_pCD0022 IPR042194 FHIPEP, domain 1 YPZ3_pCD0022 IPR042193 FHIPEP, domain 3 YPZ3_pCD0023 IPR016684 Type III secretion system chaperone, YscY YPZ3_pCD0023 IPR011990 Tetratricopeptide-like helical domain superfamily YPZ3_pCD0024 IPR012672 Type III secretion system YscX YPZ3_pCD0025 IPR012673 Type III secretion system chaperone SycN YPZ3_pCD0026 IPR010812 Hypersensitivity response secretion-like, HrpJ YPZ3_pCD0026 IPR013401 Type III secretion regulator, YopN/LcrE/InvE/MxiC YPZ3_pCD0027 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain YPZ3_pCD0027 IPR003593 AAA+ ATPase domain YPZ3_pCD0027 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPZ3_pCD0027 IPR005714 ATPase, type III secretion system, FliI/YscN YPZ3_pCD0027 IPR013380 ATPase, type III secretion system, H+-transporting YPZ3_pCD0027 IPR040627 T3SS EscN ATPase, C-terminal YPZ3_pCD0027 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPZ3_pCD0027 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_pCD0028 IPR009929 Type III secretion sytem,YscO YPZ3_pCD0029 IPR021136 Flagellar hook-length control protein-like, C-terminal YPZ3_pCD0029 IPR013354 Type III secretion system needle length determinant, C-terminal domain YPZ3_pCD0030 IPR003283 Type III secretion system outer membrane, SpaO YPZ3_pCD0030 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO YPZ3_pCD0030 IPR036429 SpoA-like superfamily YPZ3_pCD0030 IPR001543 Surface presentation of antigen (SpoA) YPZ3_pCD0031 IPR005838 Type III secretion system inner membrane P protein YPZ3_pCD0031 IPR005773 Yop virulence translocation protein R YPZ3_pCD0032 IPR002010 Type III secretion system inner membrane R protein YPZ3_pCD0032 IPR006304 Type III secretion protein SpaR/YscT YPZ3_pCD0033 IPR029025 Type III secretion system substrate exporter, C-terminal YPZ3_pCD0033 IPR006135 Type III secretion system substrate exporter YPZ3_pCD0033 IPR006307 Type III exporter system, secretion apparatus protein BsaZ YPZ3_pCD0035 IPR003313 AraC-type arabinose-binding/dimerisation domain YPZ3_pCD0035 IPR037923 Transcription regulator HTH-like YPZ3_pCD0035 IPR018060 DNA binding HTH domain, AraC-type YPZ3_pCD0035 IPR018062 HTH domain AraC-type, conserved site YPZ3_pCD0035 IPR009057 Homeobox-like domain superfamily YPZ3_pCD0035 IPR020449 Transcription regulator HTH, AraC- type YPZ3_pCD0036 IPR013353 Type III secretion system chaperone YscB YPZ3_pCD0036 IPR010261 Tir chaperone protein (CesT) family YPZ3_pCD0039 IPR012843 Type III secretion system YscD/HrpQ YPZ3_pCD0039 IPR032030 YscD, cytoplasmic domain YPZ3_pCD0039 IPR032034 Yop protein translocation protein D, periplasmic domain YPZ3_pCD0039 IPR008984 SMAD/FHA domain superfamily YPZ3_pCD0039 IPR000253 Forkhead-associated (FHA) domain YPZ3_pCD0040 IPR011990 Tetratricopeptide-like helical domain superfamily YPZ3_pCD0040 IPR013348 Type III secretion system YscG YPZ3_pCD0041 IPR041814 Type III secretion system virulence factor YopR, core domain YPZ3_pCD0041 IPR013349 Type III secretion system effector YopR YPZ3_pCD0042 IPR012670 Type III secretion system, YscI/HrpB YPZ3_pCD0043 IPR006182 Secretory protein YscJ/FliF YPZ3_pCD0043 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ YPZ3_pCD0044 IPR009510 Type III secretion system, secretion protein K YPZ3_pCD0045 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YPZ3_pCD0045 IPR012842 Type III secretion system HrpE/YscL YPZ3_pCD0046 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily YPZ3_pCD0046 IPR015103 Protein-tyrosine phosphatase, YopH, N-terminal YPZ3_pCD0048 IPR012337 Ribonuclease H-like superfamily YPZ3_pCD0048 IPR036397 Ribonuclease H superfamily YPZ3_pCD0048 IPR001584 Integrase, catalytic core YPZ3_pCD0048 IPR025948 HTH-like domain YPZ3_pCD0049 IPR000242 PTP type protein phosphatase YPZ3_pCD0049 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily YPZ3_pCD0049 IPR015103 Protein-tyrosine phosphatase, YopH, N-terminal YPZ3_pCD0049 IPR003595 Protein-tyrosine phosphatase, catalytic YPZ3_pCD0049 IPR000387 Tyrosine specific protein phosphatases domain YPZ3_pCD0049 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH YPZ3_pCD0049 IPR029021 Protein-tyrosine phosphatase-like YPZ3_pCD0049 IPR016130 Protein-tyrosine phosphatase, active site YPZ3_pCD0050 IPR036397 Ribonuclease H superfamily YPZ3_pCD0050 IPR012337 Ribonuclease H-like superfamily YPZ3_pCD0050 IPR025948 HTH-like domain YPZ3_pCD0050 IPR001584 Integrase, catalytic core YPZ3_pCD0052 IPR003547 Serine/threonine protein kinase, yersinia-type YPZ3_pCD0052 IPR011009 Protein kinase-like domain superfamily YPZ3_pCD0052 IPR019093 Rac1-binding domain YPZ3_pCD0052 IPR000719 Protein kinase domain YPZ3_pCD0052 IPR008271 Serine/threonine-protein kinase, active site YPZ3_pCD0054 IPR003446 Plasmid replication initiation, RepA YPZ3_pCD0054 IPR017837 Plasmid replication initiator, RepA, IncFII type YPZ3_pCD0057 IPR009767 DNA helicase, TraI type YPZ3_pCD0057 IPR014129 Conjugative transfer relaxase protein TraI YPZ3_pCD0057 IPR014059 Conjugative relaxase, N-terminal YPZ3_pCD0057 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_pCD0057 IPR014862 TrwC relaxase YPZ3_pCD0057 IPR040668 TraI, 2B/2B-like domain YPZ3_pCD0057 IPR040987 TraI, N-terminal subdomain YPZ3_pCD0058 IPR008640 Head domain of trimeric autotransporter adhesin YPZ3_pCD0058 IPR005594 YadA-like, C-terminal YPZ3_pCD0058 IPR011049 Serralysin-like metalloprotease, C-terminal YPZ3_pCD0058 IPR008126 Outer membrane adhesion, Yersinia YPZ3_pCD0058 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPZ3_pCD0060 IPR002513 Tn3 transposase DDE domain YPZ3_pCD0060 IPR025296 Domain of unknown function DUF4158 YPZ3_pCD0061 IPR009057 Homeobox-like domain superfamily YPZ3_pCD0061 IPR006118 Recombinase, conserved site YPZ3_pCD0061 IPR006119 Resolvase, N-terminal catalytic domain YPZ3_pCD0061 IPR006120 Resolvase, HTH domain YPZ3_pCD0061 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily YPZ3_pCD0064 IPR012337 Ribonuclease H-like superfamily YPZ3_pCD0064 IPR036397 Ribonuclease H superfamily YPZ3_pCD0064 IPR025948 HTH-like domain YPZ3_pCD0064 IPR001584 Integrase, catalytic core YPZ3_pCD0066 IPR001270 ClpA/B family YPZ3_pCD0066 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_pCD0066 IPR002611 IstB-like ATP-binding protein YPZ3_pCD0066 IPR003593 AAA+ ATPase domain YPZ3_pCD0066 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_pMT0001 IPR036397 Ribonuclease H superfamily YPZ3_pMT0001 IPR012337 Ribonuclease H-like superfamily YPZ3_pMT0001 IPR017894 HTH domain, IS21 transposase-type YPZ3_pMT0001 IPR001584 Integrase, catalytic core YPZ3_pMT0001 IPR006120 Resolvase, HTH domain YPZ3_pMT0002 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_pMT0002 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_pMT0002 IPR001270 ClpA/B family YPZ3_pMT0002 IPR003593 AAA+ ATPase domain YPZ3_pMT0002 IPR002611 IstB-like ATP-binding protein YPZ3_pMT0003 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPZ3_pMT0004 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal YPZ3_pMT0004 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 YPZ3_pMT0004 IPR037053 Phage tail collar domain superfamily YPZ3_pMT0004 IPR011083 Phage tail collar domain YPZ3_pMT0004 IPR037053 Phage tail collar domain superfamily YPZ3_pMT0004 IPR011083 Phage tail collar domain YPZ3_pMT0004 IPR008969 Carboxypeptidase-like, regulatory domain superfamily YPZ3_pMT0004 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal YPZ3_pMT0004 IPR008969 Carboxypeptidase-like, regulatory domain superfamily YPZ3_pMT0004 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 YPZ3_pMT0011 IPR013491 Caudovirus, tape measure, N-terminal YPZ3_pMT0026 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPZ3_pMT0026 IPR017871 ABC transporter, conserved site YPZ3_pMT0026 IPR010132 ATPase, type I secretion system, HlyB YPZ3_pMT0026 IPR011527 ABC transporter type 1, transmembrane domain YPZ3_pMT0026 IPR003439 ABC transporter-like YPZ3_pMT0026 IPR005074 Peptidase C39, bacteriocin processing YPZ3_pMT0026 IPR039421 Type I protein exporter YPZ3_pMT0026 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_pMT0026 IPR003593 AAA+ ATPase domain YPZ3_pMT0026 IPR039395 Peptidase C39-like A YPZ3_pMT0027 IPR036086 ParB/Sulfiredoxin superfamily YPZ3_pMT0027 IPR004437 ParB/RepB/Spo0J partition protein YPZ3_pMT0027 IPR041468 ParB/Spo0J, HTH domain YPZ3_pMT0027 IPR003115 ParB/Sulfiredoxin YPZ3_pMT0028 IPR036086 ParB/Sulfiredoxin superfamily YPZ3_pMT0028 IPR003115 ParB/Sulfiredoxin YPZ3_pMT0028 IPR004437 ParB/RepB/Spo0J partition protein YPZ3_pMT0028 IPR041468 ParB/Spo0J, HTH domain YPZ3_pMT0029 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_pMT0029 IPR012340 Nucleic acid-binding, OB-fold YPZ3_pMT0029 IPR001650 Helicase, C-terminal YPZ3_pMT0029 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPZ3_pMT0029 IPR011545 DEAD/DEAH box helicase domain YPZ3_pMT0029 IPR033454 RecG, wedge domain YPZ3_pMT0029 IPR004609 ATP-dependent DNA helicase RecG YPZ3_pMT0034 IPR002686 Transposase IS200-like YPZ3_pMT0034 IPR036515 Transposase IS200-like superfamily YPZ3_pMT0041 IPR000525 Initiator Rep protein YPZ3_pMT0046 IPR013765 DNA recombination and repair protein RecA YPZ3_pMT0046 IPR020584 DNA recombination/repair protein RecA, conserved site YPZ3_pMT0046 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_pMT0046 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain YPZ3_pMT0046 IPR003593 AAA+ ATPase domain YPZ3_pMT0046 IPR023400 DNA recombination and repair protein RecA, C-terminal YPZ3_pMT0046 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface YPZ3_pMT0047 IPR008918 Helix-hairpin-helix motif, class 2 YPZ3_pMT0047 IPR002421 5'-3' exonuclease, N-terminal YPZ3_pMT0047 IPR029060 PIN-like domain superfamily YPZ3_pMT0047 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPZ3_pMT0047 IPR020045 DNA polymerase I-like, H3TH domain YPZ3_pMT0047 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPZ3_pMT0047 IPR038969 Flap endonuclease YPZ3_pMT0052 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain YPZ3_pMT0052 IPR040982 DNA polymerase III alpha subunit finger domain YPZ3_pMT0052 IPR004013 PHP domain YPZ3_pMT0052 IPR029460 DNA polymerase, helix-hairpin-helix motif YPZ3_pMT0052 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPZ3_pMT0052 IPR036895 Uracil-DNA glycosylase-like domain superfamily YPZ3_pMT0052 IPR004805 DNA polymerase III, alpha subunit YPZ3_pMT0054 IPR025861 Cobalamin biosynthesis protein CobT VWA domain YPZ3_pMT0054 IPR002035 von Willebrand factor, type A YPZ3_pMT0054 IPR006538 Cobalt chelatase, CobT subunit YPZ3_pMT0054 IPR036465 von Willebrand factor A-like domain superfamily YPZ3_pMT0057 IPR008966 Adhesion domain superfamily YPZ3_pMT0057 IPR015335 F1 capsule antigen YPZ3_pMT0057 IPR038699 F1 capsule antigen superfamily YPZ3_pMT0058 IPR037224 PapC, N-terminal domain superfamily YPZ3_pMT0058 IPR000015 Outer membrane usher protein YPZ3_pMT0058 IPR018030 Fimbrial membrane usher, conserved site YPZ3_pMT0058 IPR042186 Outer membrane usher protein FimD, plug domain YPZ3_pMT0058 IPR025949 PapC-like, C-terminal domain YPZ3_pMT0058 IPR025885 PapC, N-terminal domain YPZ3_pMT0059 IPR018046 Pili assembly chaperone, conserved site YPZ3_pMT0059 IPR016148 Pili assembly chaperone, C-terminal YPZ3_pMT0059 IPR016147 Pili assembly chaperone, N-terminal YPZ3_pMT0059 IPR013783 Immunoglobulin-like fold YPZ3_pMT0059 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPZ3_pMT0059 IPR008962 PapD-like superfamily YPZ3_pMT0059 IPR001829 Pili assembly chaperone, bacterial YPZ3_pMT0060 IPR020449 Transcription regulator HTH, AraC- type YPZ3_pMT0060 IPR011256 Regulatory factor, effector binding domain superfamily YPZ3_pMT0060 IPR029442 GyrI-like small molecule binding domain YPZ3_pMT0060 IPR018062 HTH domain AraC-type, conserved site YPZ3_pMT0060 IPR018060 DNA binding HTH domain, AraC-type YPZ3_pMT0060 IPR009057 Homeobox-like domain superfamily YPZ3_pMT0061 IPR001207 Transposase, mutator type YPZ3_pMT0062 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal YPZ3_pMT0062 IPR003346 Transposase, IS116/IS110/IS902 YPZ3_pMT0063 IPR006842 Transposase (putative), YhgA-like YPZ3_pMT0063 IPR010106 Recombination-promoting nuclease RpnA YPZ3_pMT0064 IPR000477 Reverse transcriptase domain YPZ3_pMT0066 IPR001736 Phospholipase D/Transphosphatidylase YPZ3_pMT0066 IPR025202 Phospholipase D-like domain YPZ3_pMT0067 IPR006842 Transposase (putative), YhgA-like YPZ3_pMT0067 IPR010106 Recombination-promoting nuclease RpnA YPZ3_pMT0068 IPR006118 Recombinase, conserved site YPZ3_pMT0068 IPR006120 Resolvase, HTH domain YPZ3_pMT0068 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily YPZ3_pMT0068 IPR006119 Resolvase, N-terminal catalytic domain YPZ3_pMT0069 IPR041250 ParA helix turn helix domain YPZ3_pMT0069 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_pMT0069 IPR025669 AAA domain YPZ3_pMT0070 IPR014884 ParB protein family, C-terminal YPZ3_pMT0070 IPR003115 ParB/Sulfiredoxin YPZ3_pMT0070 IPR036086 ParB/Sulfiredoxin superfamily YPZ3_pMT0070 IPR004437 ParB/RepB/Spo0J partition protein YPZ3_pMT0072 IPR001091 Restriction/modification DNA-methylase YPZ3_pMT0072 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPZ3_pMT0072 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_pMT0072 IPR002941 DNA methylase N-4/N-6 YPZ3_pMT0073 IPR009811 Protein of unknown function DUF1380 YPZ3_pMT0076 IPR004437 ParB/RepB/Spo0J partition protein YPZ3_pMT0076 IPR003115 ParB/Sulfiredoxin YPZ3_pMT0076 IPR036086 ParB/Sulfiredoxin superfamily YPZ3_pPCP0001 IPR006120 Resolvase, HTH domain YPZ3_pPCP0001 IPR017894 HTH domain, IS21 transposase-type YPZ3_pPCP0001 IPR036397 Ribonuclease H superfamily YPZ3_pPCP0001 IPR001584 Integrase, catalytic core YPZ3_pPCP0001 IPR012337 Ribonuclease H-like superfamily YPZ3_pPCP0002 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPZ3_pPCP0002 IPR002611 IstB-like ATP-binding protein YPZ3_pPCP0002 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPZ3_pPCP0002 IPR001270 ClpA/B family YPZ3_pPCP0002 IPR003593 AAA+ ATPase domain YPZ3_pPCP0007 IPR020080 Outer membrane adhesin/peptidase omptin YPZ3_pPCP0007 IPR000036 Peptidase A26, omptin YPZ3_pPCP0007 IPR020079 Peptidase A26, omptin, conserved site YPZ3_pPCP0008 IPR009241 Toxin HigB-like