locus-tag class description YPZ3_0001 PF00258 Flavodoxin YPZ3_0002 PF01037 Lrp/AsnC ligand binding domain YPZ3_0003 PF03590 Aspartate-ammonia ligase YPZ3_0004 PF05762 VWA domain containing CoxE-like protein YPZ3_0005 PF17868 AAA lid domain YPZ3_0005 PF12592 Protein of unknown function (DUF3763) YPZ3_0005 PF07728 AAA domain (dynein-related subfamily) YPZ3_0006 PF02705 K+ potassium transporter YPZ3_0007 PF05025 RbsD / FucU transport protein family YPZ3_0008 PF00294 pfkB family carbohydrate kinase YPZ3_0009 PF07690 Major Facilitator Superfamily YPZ3_0010 PF00392 Bacterial regulatory proteins, gntR family YPZ3_0010 PF07729 FCD domain YPZ3_0011 PF00872 Transposase, Mutator family YPZ3_0012 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YPZ3_0013 PF12804 MobA-like NTP transferase domain YPZ3_0014 PF01636 Phosphotransferase enzyme family YPZ3_0015 PF01323 DSBA-like thioredoxin domain YPZ3_0016 PF01612 3'-5' exonuclease YPZ3_0016 PF00476 DNA polymerase family A YPZ3_0016 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPZ3_0016 PF01367 5'-3' exonuclease, C-terminal SAM fold YPZ3_0017 PF01797 Transposase IS200 like YPZ3_0018 PF01926 50S ribosome-binding GTPase YPZ3_0019 PF04220 Der GTPase activator (YihI) YPZ3_0020 PF06969 HemN C-terminal domain YPZ3_0020 PF04055 Radical SAM superfamily YPZ3_0021 PF02954 Bacterial regulatory protein, Fis family YPZ3_0021 PF00072 Response regulator receiver domain YPZ3_0021 PF00158 Sigma-54 interaction domain YPZ3_0022 PF00989 PAS fold YPZ3_0022 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_0022 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_0023 PF00120 Glutamine synthetase, catalytic domain YPZ3_0023 PF03951 Glutamine synthetase, beta-Grasp domain YPZ3_0025 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_0026 PF03631 Virulence factor BrkB YPZ3_0027 PF02580 D-Tyr-tRNA(Tyr) deacylase YPZ3_0028 PF01695 IstB-like ATP binding protein YPZ3_0029 PF02796 Helix-turn-helix domain of resolvase YPZ3_0029 PF00665 Integrase core domain YPZ3_0030 PF00583 Acetyltransferase (GNAT) family YPZ3_0030 PF09500 Putative thioesterase (yiiD_Cterm) YPZ3_0031 PF05170 AsmA family YPZ3_0032 PF00860 Permease family YPZ3_0033 PF03616 Sodium/glutamate symporter YPZ3_0034 PF17191 RecG wedge domain YPZ3_0034 PF00271 Helicase conserved C-terminal domain YPZ3_0034 PF00270 DEAD/DEAH box helicase YPZ3_0035 PF00588 SpoU rRNA Methylase family YPZ3_0035 PF12105 SpoU, rRNA methylase, C-terminal YPZ3_0036 PF13291 ACT domain YPZ3_0036 PF04607 Region found in RelA / SpoT proteins YPZ3_0036 PF02824 TGS domain YPZ3_0037 PF00625 Guanylate kinase YPZ3_0038 PF01653 NAD-dependent DNA ligase adenylation domain YPZ3_0038 PF03120 NAD-dependent DNA ligase OB-fold domain YPZ3_0039 PF03458 UPF0126 domain YPZ3_0040 PF08340 Domain of unknown function (DUF1732) YPZ3_0040 PF03755 YicC-like family, N-terminal region YPZ3_0041 PF03725 3' exoribonuclease family, domain 2 YPZ3_0041 PF01138 3' exoribonuclease family, domain 1 YPZ3_0042 PF00156 Phosphoribosyl transferase domain YPZ3_0043 PF00440 Bacterial regulatory proteins, tetR family YPZ3_0044 PF00692 dUTPase YPZ3_0045 PF02441 Flavoprotein YPZ3_0045 PF04127 DNA / pantothenate metabolism flavoprotein YPZ3_0046 PF04002 RadC-like JAB domain YPZ3_0047 PF06827 Zinc finger found in FPG and IleRS YPZ3_0047 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YPZ3_0047 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YPZ3_0048 PF01467 Cytidylyltransferase-like YPZ3_0049 PF00535 Glycosyl transferase family 2 YPZ3_0050 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YPZ3_0051 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPZ3_0052 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPZ3_0053 PF01370 NAD dependent epimerase/dehydratase family YPZ3_0054 PF00155 Aminotransferase class I and II YPZ3_0055 PF08240 Alcohol dehydrogenase GroES-like domain YPZ3_0055 PF00107 Zinc-binding dehydrogenase YPZ3_0056 PF04748 Divergent polysaccharide deacetylase YPZ3_0057 PF04748 Divergent polysaccharide deacetylase YPZ3_0058 PF01551 Peptidase family M23 YPZ3_0059 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YPZ3_0059 PF01676 Metalloenzyme superfamily YPZ3_0060 PF00581 Rhodanese-like domain YPZ3_0061 PF02556 Preprotein translocase subunit SecB YPZ3_0062 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YPZ3_0062 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YPZ3_0063 PF00132 Bacterial transferase hexapeptide (six repeats) YPZ3_0063 PF06426 Serine acetyltransferase, N-terminal YPZ3_0064 PF00588 SpoU rRNA Methylase family YPZ3_0065 PF02805 Metal binding domain of Ada YPZ3_0065 PF12833 Helix-turn-helix domain YPZ3_0065 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPZ3_0065 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPZ3_0066 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_0066 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_0066 PF16527 Two-component sensor protein CpxA, periplasmic domain YPZ3_0066 PF00672 HAMP domain YPZ3_0067 PF00072 Response regulator receiver domain YPZ3_0067 PF00486 Transcriptional regulatory protein, C terminal YPZ3_0068 PF07813 LTXXQ motif family protein YPZ3_0069 PF04754 Putative transposase, YhgA-like YPZ3_0070 PF01545 Cation efflux family YPZ3_0070 PF16916 Dimerisation domain of Zinc Transporter YPZ3_0071 PF00365 Phosphofructokinase YPZ3_0074 PF00939 Sodium:sulfate symporter transmembrane region YPZ3_0075 PF03737 Aldolase/RraA YPZ3_0076 PF02585 GlcNAc-PI de-N-acetylase YPZ3_0077 PF03466 LysR substrate binding domain YPZ3_0077 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_0078 PF00121 Triosephosphate isomerase YPZ3_0079 PF07305 Protein of unknown function (DUF1454) YPZ3_0080 PF05656 Protein of unknown function (DUF805) YPZ3_0081 PF00970 Oxidoreductase FAD-binding domain YPZ3_0081 PF00175 Oxidoreductase NAD-binding domain YPZ3_0082 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YPZ3_0083 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPZ3_0083 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPZ3_0084 PF00230 Major intrinsic protein YPZ3_0086 PF00005 ABC transporter YPZ3_0086 PF00664 ABC transporter transmembrane region YPZ3_0086 PF03412 Peptidase C39 family YPZ3_0087 PF00529 HlyD membrane-fusion protein of T1SS YPZ3_0087 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_0089 PF03737 Aldolase/RraA YPZ3_0090 PF01040 UbiA prenyltransferase family YPZ3_0091 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_0091 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_0091 PF07724 AAA domain (Cdc48 subfamily) YPZ3_0092 PF00227 Proteasome subunit YPZ3_0093 PF05036 Sporulation related domain YPZ3_0094 PF00356 Bacterial regulatory proteins, lacI family YPZ3_0095 PF00270 DEAD/DEAH box helicase YPZ3_0095 PF00271 Helicase conserved C-terminal domain YPZ3_0095 PF17764 3′ DNA-binding domain (3′BD) YPZ3_0095 PF18074 Primosomal protein N C-terminal domain YPZ3_0095 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YPZ3_0096 PF05360 yiaA/B two helix domain YPZ3_0097 PF01340 Met Apo-repressor, MetJ YPZ3_0098 PF01053 Cys/Met metabolism PLP-dependent enzyme YPZ3_0099 PF00742 Homoserine dehydrogenase YPZ3_0099 PF03447 Homoserine dehydrogenase, NAD binding domain YPZ3_0099 PF00696 Amino acid kinase family YPZ3_0100 PF02219 Methylenetetrahydrofolate reductase YPZ3_0101 PF13333 Integrase core domain YPZ3_0101 PF00665 Integrase core domain YPZ3_0101 PF13276 HTH-like domain YPZ3_0103 PF00455 DeoR C terminal sensor domain YPZ3_0103 PF08220 DeoR-like helix-turn-helix domain YPZ3_0104 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YPZ3_0104 PF01694 Rhomboid family YPZ3_0105 PF00581 Rhodanese-like domain YPZ3_0106 PF17874 MalT-like TPR region YPZ3_0106 PF00196 Bacterial regulatory proteins, luxR family YPZ3_0107 PF00343 Carbohydrate phosphorylase YPZ3_0108 PF00343 Carbohydrate phosphorylase YPZ3_0109 PF02446 4-alpha-glucanotransferase YPZ3_0110 PF01521 Iron-sulphur cluster biosynthesis YPZ3_0110 PF01106 NifU-like domain YPZ3_0111 PF00156 Phosphoribosyl transferase domain YPZ3_0112 PF00561 alpha/beta hydrolase fold YPZ3_0113 PF07664 Ferrous iron transport protein B C terminus YPZ3_0113 PF17910 FeoB cytosolic helical domain YPZ3_0113 PF02421 Ferrous iron transport protein B YPZ3_0113 PF07670 Nucleoside recognition YPZ3_0114 PF16921 Tex protein YqgF-like domain YPZ3_0114 PF09371 Tex-like protein N-terminal domain YPZ3_0114 PF17674 HHH domain YPZ3_0114 PF00575 S1 RNA binding domain YPZ3_0115 PF01272 Transcription elongation factor, GreA/GreB, C-term YPZ3_0115 PF03449 Transcription elongation factor, N-terminal YPZ3_0116 PF00072 Response regulator receiver domain YPZ3_0116 PF00486 Transcriptional regulatory protein, C terminal YPZ3_0117 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_0117 PF00672 HAMP domain YPZ3_0117 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_0118 PF01293 Phosphoenolpyruvate carboxykinase YPZ3_0119 PF01430 Hsp33 protein YPZ3_0120 PF01479 S4 domain YPZ3_0121 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_0122 PF07095 Intracellular growth attenuator protein IgaA YPZ3_0123 PF00293 NUDIX domain YPZ3_0124 PF17092 Penicillin-binding protein OB-like domain YPZ3_0124 PF00912 Transglycosylase YPZ3_0124 PF00905 Penicillin binding protein transpeptidase domain YPZ3_0129 PF00263 Bacterial type II and III secretion system protein YPZ3_0129 PF03958 Bacterial type II/III secretion system short domain YPZ3_0130 PF01202 Shikimate kinase YPZ3_0131 PF01761 3-dehydroquinate synthase YPZ3_0132 PF05036 Sporulation related domain YPZ3_0133 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPZ3_0134 PF00834 Ribulose-phosphate 3 epimerase family YPZ3_0135 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_0136 PF00579 tRNA synthetases class I (W and Y) YPZ3_0137 PF10414 Sirohaem synthase dimerisation region YPZ3_0137 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPZ3_0137 PF14824 Sirohaem biosynthesis protein central YPZ3_0138 PF01226 Formate/nitrite transporter YPZ3_0139 PF13806 Rieske-like [2Fe-2S] domain YPZ3_0140 PF18267 Rubredoxin NAD+ reductase C-terminal domain YPZ3_0140 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_0140 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPZ3_0140 PF04324 BFD-like [2Fe-2S] binding domain YPZ3_0140 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPZ3_0141 PF07969 Amidohydrolase family YPZ3_0142 PF07690 Major Facilitator Superfamily YPZ3_0144 PF00356 Bacterial regulatory proteins, lacI family YPZ3_0145 PF02056 Family 4 glycosyl hydrolase YPZ3_0145 PF11975 Family 4 glycosyl hydrolase C-terminal domain YPZ3_0146 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPZ3_0147 PF05872 Bacterial protein of unknown function (DUF853) YPZ3_0148 PF00117 Glutamine amidotransferase class-I YPZ3_0149 PF00202 Aminotransferase class-III YPZ3_0150 PF12805 FUSC-like inner membrane protein yccS YPZ3_0151 PF00027 Cyclic nucleotide-binding domain YPZ3_0151 PF13545 Crp-like helix-turn-helix domain YPZ3_0152 PF02566 OsmC-like protein YPZ3_0154 PF00485 Phosphoribulokinase / Uridine kinase family YPZ3_0155 PF00561 alpha/beta hydrolase fold YPZ3_0156 PF01810 LysE type translocator YPZ3_0157 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPZ3_0158 PF00005 ABC transporter YPZ3_0159 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_0160 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YPZ3_0162 PF00535 Glycosyl transferase family 2 YPZ3_0163 PF12848 ABC transporter YPZ3_0163 PF00005 ABC transporter YPZ3_0164 PF12848 ABC transporter YPZ3_0164 PF00005 ABC transporter YPZ3_0165 PF02525 Flavodoxin-like fold YPZ3_0166 PF02254 TrkA-N domain YPZ3_0166 PF00999 Sodium/hydrogen exchanger family YPZ3_0167 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPZ3_0168 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPZ3_0168 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPZ3_0169 PF13309 HTH domain YPZ3_0169 PF08348 YheO-like PAS domain YPZ3_0170 PF02635 DsrE/DsrF-like family YPZ3_0171 PF02635 DsrE/DsrF-like family YPZ3_0172 PF00164 Ribosomal protein S12/S23 YPZ3_0173 PF00177 Ribosomal protein S7p/S5e YPZ3_0174 PF03764 Elongation factor G, domain IV YPZ3_0174 PF14492 Elongation Factor G, domain II YPZ3_0174 PF00009 Elongation factor Tu GTP binding domain YPZ3_0174 PF00679 Elongation factor G C-terminus YPZ3_0174 PF03144 Elongation factor Tu domain 2 YPZ3_0175 PF00009 Elongation factor Tu GTP binding domain YPZ3_0175 PF03143 Elongation factor Tu C-terminal domain YPZ3_0175 PF03144 Elongation factor Tu domain 2 YPZ3_0176 PF01797 Transposase IS200 like YPZ3_0177 PF00210 Ferritin-like domain YPZ3_0178 PF00338 Ribosomal protein S10p/S20e YPZ3_0179 PF00297 Ribosomal protein L3 YPZ3_0180 PF00573 Ribosomal protein L4/L1 family YPZ3_0181 PF00276 Ribosomal protein L23 YPZ3_0182 PF00181 Ribosomal Proteins L2, RNA binding domain YPZ3_0182 PF03947 Ribosomal Proteins L2, C-terminal domain YPZ3_0183 PF00237 Ribosomal protein L22p/L17e YPZ3_0184 PF07650 KH domain YPZ3_0184 PF00189 Ribosomal protein S3, C-terminal domain YPZ3_0185 PF00252 Ribosomal protein L16p/L10e YPZ3_0186 PF00238 Ribosomal protein L14p/L23e YPZ3_0187 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YPZ3_0187 PF00467 KOW motif YPZ3_0188 PF00673 ribosomal L5P family C-terminus YPZ3_0188 PF00281 Ribosomal protein L5 YPZ3_0189 PF00253 Ribosomal protein S14p/S29e YPZ3_0190 PF00410 Ribosomal protein S8 YPZ3_0191 PF00347 Ribosomal protein L6 YPZ3_0192 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YPZ3_0193 PF03719 Ribosomal protein S5, C-terminal domain YPZ3_0193 PF00333 Ribosomal protein S5, N-terminal domain YPZ3_0194 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YPZ3_0195 PF00344 SecY translocase YPZ3_0196 PF00416 Ribosomal protein S13/S18 YPZ3_0197 PF00411 Ribosomal protein S11 YPZ3_0198 PF00163 Ribosomal protein S4/S9 N-terminal domain YPZ3_0198 PF01479 S4 domain YPZ3_0199 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YPZ3_0199 PF01000 RNA polymerase Rpb3/RpoA insert domain YPZ3_0199 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YPZ3_0200 PF01196 Ribosomal protein L17 YPZ3_0201 PF13411 MerR HTH family regulatory protein YPZ3_0202 PF01741 Large-conductance mechanosensitive channel, MscL YPZ3_0203 PF02254 TrkA-N domain YPZ3_0203 PF02080 TrkA-C domain YPZ3_0204 PF01029 NusB family YPZ3_0204 PF01189 16S rRNA methyltransferase RsmB/F YPZ3_0205 PF02911 Formyl transferase, C-terminal domain YPZ3_0205 PF00551 Formyl transferase YPZ3_0206 PF01327 Polypeptide deformylase YPZ3_0207 PF17782 DprA winged helix domain YPZ3_0207 PF02481 DNA recombination-mediator protein A YPZ3_0208 PF04361 Protein of unknown function (DUF494) YPZ3_0209 PF01396 Topoisomerase DNA binding C4 zinc finger YPZ3_0210 PF01300 Telomere recombination YPZ3_0211 PF08501 Shikimate dehydrogenase substrate binding domain YPZ3_0211 PF01488 Shikimate / quinate 5-dehydrogenase YPZ3_0211 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YPZ3_0212 PF00132 Bacterial transferase hexapeptide (six repeats) YPZ3_0213 PF01695 IstB-like ATP binding protein YPZ3_0214 PF00665 Integrase core domain YPZ3_0214 PF02796 Helix-turn-helix domain of resolvase YPZ3_0216 PF00474 Sodium:solute symporter family YPZ3_0217 PF04341 Protein of unknown function, DUF485 YPZ3_0218 PF16177 Acetyl-coenzyme A synthetase N-terminus YPZ3_0218 PF13193 AMP-binding enzyme C-terminal domain YPZ3_0218 PF00501 AMP-binding enzyme YPZ3_0219 PF00375 Sodium:dicarboxylate symporter family YPZ3_0220 PF00072 Response regulator receiver domain YPZ3_0220 PF00196 Bacterial regulatory proteins, luxR family YPZ3_0221 PF00072 Response regulator receiver domain YPZ3_0221 PF01627 Hpt domain YPZ3_0221 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_0221 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_0221 PF00672 HAMP domain YPZ3_0221 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPZ3_0224 PF12833 Helix-turn-helix domain YPZ3_0224 PF14525 AraC-binding-like domain YPZ3_0225 PF01514 Secretory protein of YscJ/FliF family YPZ3_0228 PF00771 FHIPEP family YPZ3_0229 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPZ3_0229 PF18269 T3SS EscN ATPase C-terminal domain YPZ3_0232 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPZ3_0233 PF00813 FliP family YPZ3_0234 PF01311 Bacterial export proteins, family 1 YPZ3_0235 PF01312 FlhB HrpN YscU SpaS Family YPZ3_0236 PF04143 Sulphur transport YPZ3_0237 PF03466 LysR substrate binding domain YPZ3_0237 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_0238 PF03222 Tryptophan/tyrosine permease family YPZ3_0239 PF01053 Cys/Met metabolism PLP-dependent enzyme YPZ3_0240 PF00005 ABC transporter YPZ3_0241 PF01032 FecCD transport family YPZ3_0242 PF01497 Periplasmic binding protein YPZ3_0243 PF05171 Haemin-degrading HemS.ChuX domain YPZ3_0244 PF07715 TonB-dependent Receptor Plug Domain YPZ3_0244 PF00593 TonB dependent receptor YPZ3_0245 PF13460 NAD(P)H-binding YPZ3_0246 PF06228 Haem utilisation ChuX/HutX YPZ3_0247 PF04055 Radical SAM superfamily YPZ3_0251 PF11202 Phosphoribosyl transferase (PRTase) YPZ3_0251 PF15608 PELOTA RNA binding domain YPZ3_0255 PF02342 TerD domain YPZ3_0256 PF02342 TerD domain YPZ3_0257 PF05099 Tellurite resistance protein TerB YPZ3_0258 PF03741 Integral membrane protein TerC family YPZ3_0259 PF02342 TerD domain YPZ3_0260 PF02342 TerD domain YPZ3_0262 PF13954 PapC N-terminal domain YPZ3_0262 PF13953 PapC C-terminal domain YPZ3_0262 PF00577 Outer membrane usher protein YPZ3_0263 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_0265 PF01565 FAD binding domain YPZ3_0265 PF08031 Berberine and berberine like YPZ3_0266 PF12951 Passenger-associated-transport-repeat YPZ3_0267 PF04345 Chorismate lyase YPZ3_0268 PF01040 UbiA prenyltransferase family YPZ3_0269 PF01553 Acyltransferase YPZ3_0270 PF01219 Prokaryotic diacylglycerol kinase YPZ3_0271 PF00717 Peptidase S24-like YPZ3_0271 PF01726 LexA DNA binding domain YPZ3_0272 PF01475 Ferric uptake regulator family YPZ3_0273 PF01207 Dihydrouridine synthase (Dus) YPZ3_0274 PF08240 Alcohol dehydrogenase GroES-like domain YPZ3_0274 PF00107 Zinc-binding dehydrogenase YPZ3_0275 PF03796 DnaB-like helicase C terminal domain YPZ3_0275 PF00772 DnaB-like helicase N terminal domain YPZ3_0276 PF01168 Alanine racemase, N-terminal domain YPZ3_0276 PF00842 Alanine racemase, C-terminal domain YPZ3_0277 PF00155 Aminotransferase class I and II YPZ3_0278 PF04237 YjbR YPZ3_0279 PF17755 UvrA DNA-binding domain YPZ3_0279 PF17760 UvrA interaction domain YPZ3_0279 PF00005 ABC transporter YPZ3_0280 PF00436 Single-strand binding protein family YPZ3_0281 PF05336 L-rhamnose mutarotase YPZ3_0282 PF00465 Iron-containing alcohol dehydrogenase YPZ3_0283 PF00596 Class II Aldolase and Adducin N-terminal domain YPZ3_0284 PF06134 L-rhamnose isomerase (RhaA) YPZ3_0285 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPZ3_0285 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPZ3_0286 PF02311 AraC-like ligand binding domain YPZ3_0286 PF12833 Helix-turn-helix domain YPZ3_0287 PF02311 AraC-like ligand binding domain YPZ3_0287 PF12833 Helix-turn-helix domain YPZ3_0288 PF06379 L-rhamnose-proton symport protein (RhaT) YPZ3_0291 PF13614 AAA domain YPZ3_0292 PF03796 DnaB-like helicase C terminal domain YPZ3_0292 PF00772 DnaB-like helicase N terminal domain YPZ3_0299 PF01751 Toprim domain YPZ3_0299 PF01131 DNA topoisomerase YPZ3_0301 PF00436 Single-strand binding protein family YPZ3_0333 PF08401 Domain of unknown function (DUF1738) YPZ3_0333 PF13362 Toprim domain YPZ3_0333 PF18818 Metallopeptidase superfamily domain YPZ3_0336 PF05717 IS66 Orf2 like protein YPZ3_0337 PF13007 Transposase C of IS166 homeodomain YPZ3_0337 PF13005 zinc-finger binding domain of transposase IS66 YPZ3_0337 PF03050 Transposase IS66 family YPZ3_0337 PF13817 IS66 C-terminal element YPZ3_0340 PF13361 UvrD-like helicase C-terminal domain YPZ3_0340 PF00580 UvrD/REP helicase N-terminal domain YPZ3_0340 PF12705 PD-(D/E)XK nuclease superfamily YPZ3_0342 PF00589 Phage integrase family YPZ3_0342 PF02899 Phage integrase, N-terminal SAM-like domain YPZ3_0344 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_0344 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPZ3_0344 PF13247 4Fe-4S dicluster domain YPZ3_0345 PF12800 4Fe-4S binding domain YPZ3_0345 PF13247 4Fe-4S dicluster domain YPZ3_0346 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_0346 PF00384 Molybdopterin oxidoreductase YPZ3_0346 PF01568 Molydopterin dinucleotide binding domain YPZ3_0347 PF02683 Cytochrome C biogenesis protein transmembrane region YPZ3_0347 PF11412 Disulphide bond corrector protein DsbC YPZ3_0348 PF03091 CutA1 divalent ion tolerance protein YPZ3_0349 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPZ3_0350 PF10415 Fumarase C C-terminus YPZ3_0350 PF00206 Lyase YPZ3_0351 PF04186 FxsA cytoplasmic membrane protein YPZ3_0352 PF00118 TCP-1/cpn60 chaperonin family YPZ3_0353 PF13698 Domain of unknown function (DUF4156) YPZ3_0354 PF04055 Radical SAM superfamily YPZ3_0355 PF09285 Elongation factor P, C-terminal YPZ3_0355 PF08207 Elongation factor P (EF-P) KOW-like domain YPZ3_0355 PF01132 Elongation factor P (EF-P) OB domain YPZ3_0356 PF00893 Small Multidrug Resistance protein YPZ3_0357 PF02313 Fumarate reductase subunit D YPZ3_0358 PF02300 Fumarate reductase subunit C YPZ3_0359 PF13085 2Fe-2S iron-sulfur cluster binding domain YPZ3_0359 PF13183 4Fe-4S dicluster domain YPZ3_0360 PF02910 Fumarate reductase flavoprotein C-term YPZ3_0360 PF00890 FAD binding domain YPZ3_0361 PF00152 tRNA synthetases class II (D, K and N) YPZ3_0362 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPZ3_0362 PF00924 Mechanosensitive ion channel YPZ3_0362 PF12795 Mechanosensitive ion channel porin domain YPZ3_0363 PF02666 Phosphatidylserine decarboxylase YPZ3_0364 PF03193 RsgA GTPase YPZ3_0365 PF00929 Exonuclease YPZ3_0366 PF08331 Domain of unknown function (DUF1730) YPZ3_0367 PF01256 Carbohydrate kinase YPZ3_0367 PF03853 YjeF-related protein N-terminus YPZ3_0368 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YPZ3_0369 PF01520 N-acetylmuramoyl-L-alanine amidase YPZ3_0370 PF08676 MutL C terminal dimerisation domain YPZ3_0370 PF01119 DNA mismatch repair protein, C-terminal domain YPZ3_0372 PF17209 Hfq protein YPZ3_0373 PF01926 50S ribosome-binding GTPase YPZ3_0373 PF16360 GTP-binding GTPase Middle Region YPZ3_0373 PF13167 GTP-binding GTPase N-terminal YPZ3_0374 PF01145 SPFH domain / Band 7 family YPZ3_0374 PF12221 Bacterial membrane protein N terminal YPZ3_0375 PF01145 SPFH domain / Band 7 family YPZ3_0376 PF00709 Adenylosuccinate synthetase YPZ3_0377 PF02082 Transcriptional regulator YPZ3_0378 PF00773 RNB domain YPZ3_0378 PF17876 Cold shock domain YPZ3_0378 PF00575 S1 RNA binding domain YPZ3_0378 PF08461 Ribonuclease R winged-helix domain YPZ3_0378 PF08206 Ribonuclease B OB domain YPZ3_0379 PF00588 SpoU rRNA Methylase family YPZ3_0379 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPZ3_0380 PF18158 Adaptive response protein AidB N-terminal domain YPZ3_0380 PF02770 Acyl-CoA dehydrogenase, middle domain YPZ3_0380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPZ3_0381 PF07338 Protein of unknown function (DUF1471) YPZ3_0382 PF01695 IstB-like ATP binding protein YPZ3_0383 PF00665 Integrase core domain YPZ3_0383 PF02796 Helix-turn-helix domain of resolvase YPZ3_0384 PF07728 AAA domain (dynein-related subfamily) YPZ3_0384 PF12102 Domain of unknown function (DUF3578) YPZ3_0386 PF01555 DNA methylase YPZ3_0392 PF05987 Bacterial protein of unknown function (DUF898) YPZ3_0394 PF12833 Helix-turn-helix domain YPZ3_0395 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPZ3_0396 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPZ3_0398 PF00381 PTS HPr component phosphorylation site YPZ3_0398 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPZ3_0398 PF02896 PEP-utilising enzyme, TIM barrel domain YPZ3_0398 PF00391 PEP-utilising enzyme, mobile domain YPZ3_0398 PF05524 PEP-utilising enzyme, N-terminal YPZ3_0399 PF10696 Protein of unknown function (DUF2501) YPZ3_0400 PF01791 DeoC/LacD family aldolase YPZ3_0401 PF13407 Periplasmic binding protein domain YPZ3_0402 PF02653 Branched-chain amino acid transport system / permease component YPZ3_0403 PF02653 Branched-chain amino acid transport system / permease component YPZ3_0404 PF00005 ABC transporter YPZ3_0406 PF00325 Bacterial regulatory proteins, crp family YPZ3_0406 PF04198 Putative sugar-binding domain YPZ3_0407 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPZ3_0407 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPZ3_0408 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPZ3_0410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_0411 PF00873 AcrB/AcrD/AcrF family YPZ3_0412 PF01095 Pectinesterase YPZ3_0413 PF00990 Diguanylate cyclase, GGDEF domain YPZ3_0414 PF07256 Protein of unknown function (DUF1435) YPZ3_0415 PF05175 Methyltransferase small domain YPZ3_0415 PF08468 Methyltransferase small domain N-terminal YPZ3_0416 PF03603 DNA polymerase III psi subunit YPZ3_0417 PF00583 Acetyltransferase (GNAT) family YPZ3_0418 PF00009 Elongation factor Tu GTP binding domain YPZ3_0418 PF03144 Elongation factor Tu domain 2 YPZ3_0418 PF16658 Class II release factor RF3, C-terminal domain YPZ3_0419 PF04972 BON domain YPZ3_0420 PF01734 Patatin-like phospholipase YPZ3_0421 PF01026 TatD related DNase YPZ3_0422 PF07662 Na+ dependent nucleoside transporter C-terminus YPZ3_0422 PF07670 Nucleoside recognition YPZ3_0422 PF01773 Na+ dependent nucleoside transporter N-terminus YPZ3_0423 PF01791 DeoC/LacD family aldolase YPZ3_0424 PF00591 Glycosyl transferase family, a/b domain YPZ3_0424 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPZ3_0424 PF02885 Glycosyl transferase family, helical bundle domain YPZ3_0425 PF02885 Glycosyl transferase family, helical bundle domain YPZ3_0425 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPZ3_0425 PF00591 Glycosyl transferase family, a/b domain YPZ3_0426 PF01676 Metalloenzyme superfamily YPZ3_0427 PF01048 Phosphorylase superfamily YPZ3_0428 PF10144 Bacterial virulence factor haemolysin YPZ3_0429 PF18429 Domain of unknown function (DUF5609) YPZ3_0430 PF18073 Rubredoxin metal binding domain YPZ3_0431 PF01381 Helix-turn-helix YPZ3_0431 PF13521 AAA domain YPZ3_0433 PF12848 ABC transporter YPZ3_0433 PF00005 ABC transporter YPZ3_0434 PF12848 ABC transporter YPZ3_0434 PF00005 ABC transporter YPZ3_0435 PF00691 OmpA family YPZ3_0436 PF00990 Diguanylate cyclase, GGDEF domain YPZ3_0436 PF17152 Periplasmic sensor domain YPZ3_0438 PF00690 Cation transporter/ATPase, N-terminus YPZ3_0438 PF00689 Cation transporting ATPase, C-terminus YPZ3_0439 PF01464 Transglycosylase SLT domain YPZ3_0439 PF14718 Soluble lytic murein transglycosylase L domain YPZ3_0440 PF01371 Trp repressor protein YPZ3_0441 PF01931 Protein of unknown function DUF84 YPZ3_0442 PF00300 Histidine phosphatase superfamily (branch 1) YPZ3_0443 PF12833 Helix-turn-helix domain YPZ3_0443 PF06445 GyrI-like small molecule binding domain YPZ3_0444 PF05981 CreA protein YPZ3_0445 PF00486 Transcriptional regulatory protein, C terminal YPZ3_0445 PF00072 Response regulator receiver domain YPZ3_0446 PF00742 Homoserine dehydrogenase YPZ3_0446 PF00696 Amino acid kinase family YPZ3_0446 PF01842 ACT domain YPZ3_0446 PF03447 Homoserine dehydrogenase, NAD binding domain YPZ3_0446 PF13840 ACT domain YPZ3_0447 PF00288 GHMP kinases N terminal domain YPZ3_0447 PF08544 GHMP kinases C terminal YPZ3_0448 PF14821 Threonine synthase N terminus YPZ3_0448 PF00291 Pyridoxal-phosphate dependent enzyme YPZ3_0449 PF03883 Peroxide stress protein YaaA YPZ3_0450 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPZ3_0451 PF00994 Probable molybdopterin binding domain YPZ3_0452 PF07690 Major Facilitator Superfamily YPZ3_0454 PF01184 GPR1/FUN34/yaaH family YPZ3_0455 PF00012 Hsp70 protein YPZ3_0456 PF00226 DnaJ domain YPZ3_0456 PF01556 DnaJ C terminal domain YPZ3_0456 PF00684 DnaJ central domain YPZ3_0457 PF06965 Na+/H+ antiporter 1 YPZ3_0458 PF03466 LysR substrate binding domain YPZ3_0458 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_0459 PF01687 Riboflavin kinase YPZ3_0459 PF06574 FAD synthetase YPZ3_0460 PF01687 Riboflavin kinase YPZ3_0460 PF06574 FAD synthetase YPZ3_0461 PF06827 Zinc finger found in FPG and IleRS YPZ3_0461 PF00133 tRNA synthetases class I (I, L, M and V) YPZ3_0461 PF08264 Anticodon-binding domain of tRNA YPZ3_0462 PF01252 Signal peptidase (SPase) II YPZ3_0463 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPZ3_0464 PF02401 LytB protein YPZ3_0465 PF01797 Transposase IS200 like YPZ3_0466 PF05173 Dihydrodipicolinate reductase, C-terminus YPZ3_0466 PF01113 Dihydrodipicolinate reductase, N-terminus YPZ3_0467 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YPZ3_0467 PF00117 Glutamine amidotransferase class-I YPZ3_0468 PF02142 MGS-like domain YPZ3_0468 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPZ3_0468 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPZ3_0469 PF01810 LysE type translocator YPZ3_0470 PF06738 Putative threonine/serine exporter YPZ3_0471 PF12821 Threonine/Serine exporter, ThrE YPZ3_0472 PF00186 Dihydrofolate reductase YPZ3_0475 PF00149 Calcineurin-like phosphoesterase YPZ3_0476 PF04379 ApaG domain YPZ3_0477 PF00398 Ribosomal RNA adenine dimethylase YPZ3_0478 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YPZ3_0479 PF00639 PPIC-type PPIASE domain YPZ3_0479 PF09312 SurA N-terminal domain YPZ3_0480 PF04453 LPS transport system D YPZ3_0480 PF03968 OstA-like protein YPZ3_0481 PF00226 DnaJ domain YPZ3_0481 PF05099 Tellurite resistance protein TerB YPZ3_0482 PF00849 RNA pseudouridylate synthase YPZ3_0491 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_0491 PF07724 AAA domain (Cdc48 subfamily) YPZ3_0491 PF17871 AAA lid domain YPZ3_0491 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_0492 PF04717 Type VI secretion system, phage-baseplate injector YPZ3_0499 PF05736 OprF membrane domain YPZ3_0499 PF00691 OmpA family YPZ3_0502 PF00271 Helicase conserved C-terminal domain YPZ3_0502 PF00176 SNF2 family N-terminal domain YPZ3_0502 PF18339 RapA N-terminal Tudor like domain 1 YPZ3_0502 PF18337 RapA N-terminal Tudor like domain YPZ3_0502 PF12137 RNA polymerase recycling family C-terminal YPZ3_0503 PF00136 DNA polymerase family B YPZ3_0503 PF03104 DNA polymerase family B, exonuclease domain YPZ3_0504 PF09335 SNARE associated Golgi protein YPZ3_0505 PF00005 ABC transporter YPZ3_0506 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_0508 PF12793 Sugar transport-related sRNA regulator N-term YPZ3_0508 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPZ3_0509 PF07690 Major Facilitator Superfamily YPZ3_0510 PF01695 IstB-like ATP binding protein YPZ3_0511 PF00665 Integrase core domain YPZ3_0511 PF02796 Helix-turn-helix domain of resolvase YPZ3_0512 PF00694 Aconitase C-terminal domain YPZ3_0513 PF00330 Aconitase family (aconitate hydratase) YPZ3_0514 PF00180 Isocitrate/isopropylmalate dehydrogenase YPZ3_0515 PF08502 LeuA allosteric (dimerisation) domain YPZ3_0515 PF00682 HMGL-like YPZ3_0516 PF01797 Transposase IS200 like YPZ3_0517 PF03466 LysR substrate binding domain YPZ3_0517 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_0518 PF00501 AMP-binding enzyme YPZ3_0519 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPZ3_0519 PF00205 Thiamine pyrophosphate enzyme, central domain YPZ3_0519 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPZ3_0520 PF10369 Small subunit of acetolactate synthase YPZ3_0522 PF00356 Bacterial regulatory proteins, lacI family YPZ3_0522 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPZ3_0523 PF06610 L-alanine exporter YPZ3_0524 PF02381 MraZ protein, putative antitoxin-like YPZ3_0525 PF01795 MraW methylase family YPZ3_0526 PF04999 Cell division protein FtsL YPZ3_0527 PF00905 Penicillin binding protein transpeptidase domain YPZ3_0527 PF03717 Penicillin-binding Protein dimerisation domain YPZ3_0528 PF01225 Mur ligase family, catalytic domain YPZ3_0528 PF02875 Mur ligase family, glutamate ligase domain YPZ3_0528 PF08245 Mur ligase middle domain YPZ3_0529 PF08245 Mur ligase middle domain YPZ3_0529 PF02875 Mur ligase family, glutamate ligase domain YPZ3_0529 PF01225 Mur ligase family, catalytic domain YPZ3_0530 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YPZ3_0530 PF00953 Glycosyl transferase family 4 YPZ3_0531 PF08245 Mur ligase middle domain YPZ3_0531 PF02875 Mur ligase family, glutamate ligase domain YPZ3_0532 PF01098 Cell cycle protein YPZ3_0533 PF04101 Glycosyltransferase family 28 C-terminal domain YPZ3_0533 PF03033 Glycosyltransferase family 28 N-terminal domain YPZ3_0534 PF02875 Mur ligase family, glutamate ligase domain YPZ3_0534 PF08245 Mur ligase middle domain YPZ3_0534 PF01225 Mur ligase family, catalytic domain YPZ3_0535 PF01820 D-ala D-ala ligase N-terminus YPZ3_0535 PF07478 D-ala D-ala ligase C-terminus YPZ3_0536 PF08478 POTRA domain, FtsQ-type YPZ3_0536 PF03799 Cell division protein FtsQ YPZ3_0537 PF02491 SHS2 domain inserted in FTSA YPZ3_0538 PF12327 FtsZ family, C-terminal domain YPZ3_0538 PF00091 Tubulin/FtsZ family, GTPase domain YPZ3_0539 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YPZ3_0541 PF06558 Secretion monitor precursor protein (SecM) YPZ3_0542 PF07516 SecA Wing and Scaffold domain YPZ3_0542 PF01043 SecA preprotein cross-linking domain YPZ3_0542 PF02810 SEC-C motif YPZ3_0542 PF07517 SecA DEAD-like domain YPZ3_0543 PF00293 NUDIX domain YPZ3_0544 PF01695 IstB-like ATP binding protein YPZ3_0545 PF02796 Helix-turn-helix domain of resolvase YPZ3_0545 PF00665 Integrase core domain YPZ3_0546 PF07681 DoxX YPZ3_0547 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YPZ3_0548 PF05957 Bacterial protein of unknown function (DUF883) YPZ3_0550 PF13721 SecD export protein N-terminal TM region YPZ3_0551 PF09335 SNARE associated Golgi protein YPZ3_0553 PF00392 Bacterial regulatory proteins, gntR family YPZ3_0553 PF07729 FCD domain YPZ3_0554 PF07690 Major Facilitator Superfamily YPZ3_0555 PF02614 Glucuronate isomerase YPZ3_0556 PF01232 Mannitol dehydrogenase Rossmann domain YPZ3_0556 PF08125 Mannitol dehydrogenase C-terminal domain YPZ3_0557 PF08666 SAF domain YPZ3_0557 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YPZ3_0558 PF10688 Bacterial inner membrane protein YPZ3_0560 PF00375 Sodium:dicarboxylate symporter family YPZ3_0561 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPZ3_0562 PF01863 Protein of unknown function DUF45 YPZ3_0563 PF03797 Autotransporter beta-domain YPZ3_0564 PF05175 Methyltransferase small domain YPZ3_0565 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPZ3_0565 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_0566 PF03729 Short repeat of unknown function (DUF308) YPZ3_0569 PF00092 von Willebrand factor type A domain YPZ3_0571 PF02342 TerD domain YPZ3_0572 PF00092 von Willebrand factor type A domain YPZ3_0573 PF17287 POTRA domain YPZ3_0573 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPZ3_0573 PF08479 POTRA domain, ShlB-type YPZ3_0574 PF05860 haemagglutination activity domain YPZ3_0574 PF04829 Pre-toxin domain with VENN motif YPZ3_0574 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_0574 PF13332 Hemagglutinin repeat YPZ3_0575 PF04829 Pre-toxin domain with VENN motif YPZ3_0575 PF05860 haemagglutination activity domain YPZ3_0575 PF13332 Hemagglutinin repeat YPZ3_0575 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_0580 PF00005 ABC transporter YPZ3_0580 PF17912 MalK OB fold domain YPZ3_0580 PF03459 TOBE domain YPZ3_0581 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YPZ3_0582 PF00356 Bacterial regulatory proteins, lacI family YPZ3_0583 PF13416 Bacterial extracellular solute-binding protein YPZ3_0584 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_0585 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_0587 PF14310 Fibronectin type III-like domain YPZ3_0587 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPZ3_0587 PF00933 Glycosyl hydrolase family 3 N terminal domain YPZ3_0589 PF04632 Fusaric acid resistance protein family YPZ3_0590 PF00529 HlyD membrane-fusion protein of T1SS YPZ3_0590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_0595 PF01042 Endoribonuclease L-PSP YPZ3_0599 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_0599 PF03466 LysR substrate binding domain YPZ3_0604 PF04545 Sigma-70, region 4 YPZ3_0604 PF04539 Sigma-70 region 3 YPZ3_0604 PF04542 Sigma-70 region 2 YPZ3_0604 PF00140 Sigma-70 factor, region 1.2 YPZ3_0604 PF04546 Sigma-70, non-essential region YPZ3_0604 PF03979 Sigma-70 factor, region 1.1 YPZ3_0605 PF10410 DnaB-helicase binding domain of primase YPZ3_0605 PF08278 DNA primase DnaG DnaB-binding YPZ3_0605 PF01807 CHC2 zinc finger YPZ3_0605 PF08275 DNA primase catalytic core, N-terminal domain YPZ3_0606 PF00814 Glycoprotease family YPZ3_0607 PF02660 Glycerol-3-phosphate acyltransferase YPZ3_0608 PF02152 Dihydroneopterin aldolase YPZ3_0609 PF02673 Bacitracin resistance protein BacA YPZ3_0610 PF12627 Probable RNA and SrmB- binding site of polymerase A YPZ3_0610 PF01743 Poly A polymerase head domain YPZ3_0610 PF01966 HD domain YPZ3_0611 PF08239 Bacterial SH3 domain YPZ3_0612 PF01928 CYTH domain YPZ3_0613 PF08335 GlnD PII-uridylyltransferase YPZ3_0613 PF03710 Glutamate-ammonia ligase adenylyltransferase YPZ3_0614 PF01467 Cytidylyltransferase-like YPZ3_0614 PF00294 pfkB family carbohydrate kinase YPZ3_0615 PF13520 Amino acid permease YPZ3_0616 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YPZ3_0617 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPZ3_0618 PF03738 Glutathionylspermidine synthase preATP-grasp YPZ3_0619 PF06693 Protein of unknown function (DUF1190) YPZ3_0620 PF02321 Outer membrane efflux protein YPZ3_0621 PF00293 NUDIX domain YPZ3_0622 PF06853 Protein of unknown function (DUF1249) YPZ3_0623 PF00149 Calcineurin-like phosphoesterase YPZ3_0624 PF05728 Uncharacterised protein family (UPF0227) YPZ3_0625 PF00204 DNA gyrase B YPZ3_0625 PF00986 DNA gyrase B subunit, carboxyl terminus YPZ3_0625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_0625 PF01751 Toprim domain YPZ3_0626 PF03466 LysR substrate binding domain YPZ3_0626 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_0627 PF02525 Flavodoxin-like fold YPZ3_0628 PF00521 DNA gyrase/topoisomerase IV, subunit A YPZ3_0628 PF03989 DNA gyrase C-terminal domain, beta-propeller YPZ3_0629 PF01553 Acyltransferase YPZ3_0630 PF07732 Multicopper oxidase YPZ3_0630 PF07731 Multicopper oxidase YPZ3_0631 PF08497 Radical SAM N-terminal YPZ3_0631 PF04055 Radical SAM superfamily YPZ3_0631 PF11842 Domain of unknown function (DUF3362) YPZ3_0632 PF11842 Domain of unknown function (DUF3362) YPZ3_0632 PF08497 Radical SAM N-terminal YPZ3_0632 PF04055 Radical SAM superfamily YPZ3_0633 PF00248 Aldo/keto reductase family YPZ3_0634 PF00465 Iron-containing alcohol dehydrogenase YPZ3_0635 PF06719 AraC-type transcriptional regulator N-terminus YPZ3_0635 PF12833 Helix-turn-helix domain YPZ3_0636 PF09335 SNARE associated Golgi protein YPZ3_0637 PF01053 Cys/Met metabolism PLP-dependent enzyme YPZ3_0638 PF01618 MotA/TolQ/ExbB proton channel family YPZ3_0639 PF02472 Biopolymer transport protein ExbD/TolR YPZ3_0646 PF00437 Type II/IV secretion system protein YPZ3_0648 PF13629 Pilus formation protein N terminal region YPZ3_0648 PF00263 Bacterial type II and III secretion system protein YPZ3_0648 PF04972 BON domain YPZ3_0649 PF04972 BON domain YPZ3_0649 PF00263 Bacterial type II and III secretion system protein YPZ3_0649 PF13629 Pilus formation protein N terminal region YPZ3_0652 PF01797 Transposase IS200 like YPZ3_0653 PF01797 Transposase IS200 like YPZ3_0654 PF13953 PapC C-terminal domain YPZ3_0654 PF13954 PapC N-terminal domain YPZ3_0654 PF00577 Outer membrane usher protein YPZ3_0655 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_0655 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_0656 PF00419 Fimbrial protein YPZ3_0656 PF09222 Fimbrial adhesin F17-AG, lectin domain YPZ3_0657 PF01497 Periplasmic binding protein YPZ3_0659 PF00771 FHIPEP family YPZ3_0660 PF00771 FHIPEP family YPZ3_0661 PF01312 FlhB HrpN YscU SpaS Family YPZ3_0662 PF01311 Bacterial export proteins, family 1 YPZ3_0663 PF00813 FliP family YPZ3_0664 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPZ3_0666 PF02954 Bacterial regulatory protein, Fis family YPZ3_0666 PF00158 Sigma-54 interaction domain YPZ3_0666 PF00072 Response regulator receiver domain YPZ3_0667 PF02049 Flagellar hook-basal body complex protein FliE YPZ3_0668 PF01514 Secretory protein of YscJ/FliF family YPZ3_0668 PF08345 Flagellar M-ring protein C-terminal YPZ3_0671 PF18269 T3SS EscN ATPase C-terminal domain YPZ3_0671 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPZ3_0674 PF13144 Chaperone for flagella basal body P-ring formation YPZ3_0675 PF00460 Flagella basal body rod protein YPZ3_0676 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_0676 PF00460 Flagella basal body rod protein YPZ3_0677 PF03963 Flagellar hook capping protein - N-terminal region YPZ3_0677 PF13860 FlgD Ig-like domain YPZ3_0677 PF13861 FlgD Tudor-like domain YPZ3_0678 PF07559 Flagellar basal body protein FlaE YPZ3_0678 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_0678 PF00460 Flagella basal body rod protein YPZ3_0680 PF00460 Flagella basal body rod protein YPZ3_0680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_0681 PF00460 Flagella basal body rod protein YPZ3_0681 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_0682 PF02107 Flagellar L-ring protein YPZ3_0683 PF02119 Flagellar P-ring protein YPZ3_0684 PF00460 Flagella basal body rod protein YPZ3_0684 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_0688 PF00486 Transcriptional regulatory protein, C terminal YPZ3_0688 PF18500 CadC C-terminal domain 1 YPZ3_0689 PF00700 Bacterial flagellin C-terminal helical region YPZ3_0689 PF00669 Bacterial flagellin N-terminal helical region YPZ3_0690 PF00700 Bacterial flagellin C-terminal helical region YPZ3_0690 PF00669 Bacterial flagellin N-terminal helical region YPZ3_0691 PF00700 Bacterial flagellin C-terminal helical region YPZ3_0691 PF00669 Bacterial flagellin N-terminal helical region YPZ3_0692 PF07196 Flagellin hook IN motif YPZ3_0692 PF07195 Flagellar hook-associated protein 2 C-terminus YPZ3_0692 PF02465 Flagellar hook-associated protein 2 N-terminus YPZ3_0697 PF04542 Sigma-70 region 2 YPZ3_0697 PF04545 Sigma-70, region 4 YPZ3_0698 PF01618 MotA/TolQ/ExbB proton channel family YPZ3_0699 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPZ3_0699 PF00691 OmpA family YPZ3_0703 PF13276 HTH-like domain YPZ3_0703 PF00665 Integrase core domain YPZ3_0703 PF13333 Integrase core domain YPZ3_0704 PF03707 Bacterial signalling protein N terminal repeat YPZ3_0704 PF00563 EAL domain YPZ3_0704 PF00990 Diguanylate cyclase, GGDEF domain YPZ3_0704 PF13188 PAS domain YPZ3_0705 PF00529 HlyD membrane-fusion protein of T1SS YPZ3_0705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_0706 PF00873 AcrB/AcrD/AcrF family YPZ3_0707 PF07906 ShET2 enterotoxin, N-terminal region YPZ3_0709 PF03797 Autotransporter beta-domain YPZ3_0710 PF12468 Type III secretion system leucine rich repeat protein YPZ3_0710 PF14496 C-terminal novel E3 ligase, LRR-interacting YPZ3_0711 PF14496 C-terminal novel E3 ligase, LRR-interacting YPZ3_0711 PF12468 Type III secretion system leucine rich repeat protein YPZ3_0711 PF14496 C-terminal novel E3 ligase, LRR-interacting YPZ3_0711 PF12468 Type III secretion system leucine rich repeat protein YPZ3_0712 PF12468 Type III secretion system leucine rich repeat protein YPZ3_0712 PF14496 C-terminal novel E3 ligase, LRR-interacting YPZ3_0713 PF03806 AbgT putative transporter family YPZ3_0714 PF01546 Peptidase family M20/M25/M40 YPZ3_0714 PF07687 Peptidase dimerisation domain YPZ3_0715 PF00593 TonB dependent receptor YPZ3_0715 PF07715 TonB-dependent Receptor Plug Domain YPZ3_0716 PF00501 AMP-binding enzyme YPZ3_0716 PF00202 Aminotransferase class-III YPZ3_0716 PF13193 AMP-binding enzyme C-terminal domain YPZ3_0716 PF16197 Ketoacyl-synthetase C-terminal extension YPZ3_0716 PF00109 Beta-ketoacyl synthase, N-terminal domain YPZ3_0716 PF02801 Beta-ketoacyl synthase, C-terminal domain YPZ3_0716 PF00550 Phosphopantetheine attachment site YPZ3_0716 PF00668 Condensation domain YPZ3_0717 PF16197 Ketoacyl-synthetase C-terminal extension YPZ3_0717 PF02801 Beta-ketoacyl synthase, C-terminal domain YPZ3_0717 PF00109 Beta-ketoacyl synthase, N-terminal domain YPZ3_0717 PF08659 KR domain YPZ3_0717 PF00550 Phosphopantetheine attachment site YPZ3_0717 PF00698 Acyl transferase domain YPZ3_0718 PF02796 Helix-turn-helix domain of resolvase YPZ3_0718 PF00665 Integrase core domain YPZ3_0719 PF01695 IstB-like ATP binding protein YPZ3_0720 PF00668 Condensation domain YPZ3_0720 PF00550 Phosphopantetheine attachment site YPZ3_0720 PF08242 Methyltransferase domain YPZ3_0720 PF00501 AMP-binding enzyme YPZ3_0721 PF13193 AMP-binding enzyme C-terminal domain YPZ3_0721 PF00501 AMP-binding enzyme YPZ3_0721 PF00668 Condensation domain YPZ3_0722 PF00550 Phosphopantetheine attachment site YPZ3_0722 PF08242 Methyltransferase domain YPZ3_0722 PF00501 AMP-binding enzyme YPZ3_0722 PF00668 Condensation domain YPZ3_0725 PF00975 Thioesterase domain YPZ3_0727 PF04954 Siderophore-interacting protein YPZ3_0727 PF00664 ABC transporter transmembrane region YPZ3_0727 PF08021 Siderophore-interacting FAD-binding domain YPZ3_0727 PF00005 ABC transporter YPZ3_0728 PF00005 ABC transporter YPZ3_0728 PF00664 ABC transporter transmembrane region YPZ3_0731 PF02447 GntP family permease YPZ3_0733 PF12951 Passenger-associated-transport-repeat YPZ3_0734 PF12951 Passenger-associated-transport-repeat YPZ3_0735 PF04717 Type VI secretion system, phage-baseplate injector YPZ3_0737 PF05593 RHS Repeat YPZ3_0737 PF03527 RHS protein YPZ3_0739 PF00939 Sodium:sulfate symporter transmembrane region YPZ3_0740 PF00356 Bacterial regulatory proteins, lacI family YPZ3_0741 PF13333 Integrase core domain YPZ3_0741 PF13276 HTH-like domain YPZ3_0741 PF00665 Integrase core domain YPZ3_0744 PF07715 TonB-dependent Receptor Plug Domain YPZ3_0744 PF00593 TonB dependent receptor YPZ3_0745 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPZ3_0746 PF06276 Ferric iron reductase FhuF-like transporter YPZ3_0746 PF04183 IucA / IucC family YPZ3_0748 PF06276 Ferric iron reductase FhuF-like transporter YPZ3_0748 PF04183 IucA / IucC family YPZ3_0749 PF04183 IucA / IucC family YPZ3_0749 PF06276 Ferric iron reductase FhuF-like transporter YPZ3_0753 PF03472 Autoinducer binding domain YPZ3_0753 PF00196 Bacterial regulatory proteins, luxR family YPZ3_0754 PF00765 Autoinducer synthase YPZ3_0755 PF02517 CPBP intramembrane metalloprotease YPZ3_0760 PF00691 OmpA family YPZ3_0760 PF05736 OprF membrane domain YPZ3_0762 PF17871 AAA lid domain YPZ3_0762 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_0762 PF07724 AAA domain (Cdc48 subfamily) YPZ3_0762 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_0766 PF03400 IS1 transposase YPZ3_0768 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPZ3_0768 PF01276 Orn/Lys/Arg decarboxylase, major domain YPZ3_0768 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPZ3_0769 PF13407 Periplasmic binding protein domain YPZ3_0770 PF00005 ABC transporter YPZ3_0771 PF02653 Branched-chain amino acid transport system / permease component YPZ3_0772 PF07715 TonB-dependent Receptor Plug Domain YPZ3_0774 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YPZ3_0774 PF01464 Transglycosylase SLT domain YPZ3_0775 PF00633 Helix-hairpin-helix motif YPZ3_0775 PF00730 HhH-GPD superfamily base excision DNA repair protein YPZ3_0775 PF14815 NUDIX domain YPZ3_0775 PF10576 Iron-sulfur binding domain of endonuclease III YPZ3_0776 PF02390 Putative methyltransferase YPZ3_0777 PF04320 Protein with unknown function (DUF469) YPZ3_0778 PF04960 Glutaminase YPZ3_0779 PF11101 Protein of unknown function (DUF2884) YPZ3_0780 PF16671 Actin cross-linking domain YPZ3_0780 PF07634 RtxA repeat YPZ3_0780 PF11647 Membrane Localization Domain YPZ3_0780 PF11713 Peptidase C80 family YPZ3_0780 PF12146 Serine aminopeptidase, S33 YPZ3_0781 PF04055 Radical SAM superfamily YPZ3_0781 PF06969 HemN C-terminal domain YPZ3_0782 PF01725 Ham1 family YPZ3_0783 PF02594 Uncharacterised ACR, YggU family COG1872 YPZ3_0784 PF02325 YGGT family YPZ3_0785 PF03807 NADP oxidoreductase coenzyme F420-dependent YPZ3_0785 PF14748 Pyrroline-5-carboxylate reductase dimerisation YPZ3_0786 PF01168 Alanine racemase, N-terminal domain YPZ3_0787 PF00437 Type II/IV secretion system protein YPZ3_0788 PF04371 Porphyromonas-type peptidyl-arginine deiminase YPZ3_0789 PF00795 Carbon-nitrogen hydrolase YPZ3_0790 PF03652 Holliday junction resolvase YPZ3_0791 PF02622 Uncharacterized ACR, COG1678 YPZ3_0792 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YPZ3_0792 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YPZ3_0793 PF04452 RNA methyltransferase YPZ3_0794 PF04231 Endonuclease I YPZ3_0795 PF17283 SprT-like zinc ribbon domain YPZ3_0795 PF10263 SprT-like family YPZ3_0796 PF02772 S-adenosylmethionine synthetase, central domain YPZ3_0796 PF00438 S-adenosylmethionine synthetase, N-terminal domain YPZ3_0796 PF02773 S-adenosylmethionine synthetase, C-terminal domain YPZ3_0797 PF17944 Arginine decarboxylase C-terminal helical extension YPZ3_0797 PF17810 Arginine decarboxylase helical bundle domain YPZ3_0797 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPZ3_0799 PF01435 Peptidase family M48 YPZ3_0800 PF02779 Transketolase, pyrimidine binding domain YPZ3_0800 PF00456 Transketolase, thiamine diphosphate binding domain YPZ3_0800 PF02780 Transketolase, C-terminal domain YPZ3_0802 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPZ3_0802 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPZ3_0803 PF00162 Phosphoglycerate kinase YPZ3_0804 PF01116 Fructose-bisphosphate aldolase class-II YPZ3_0805 PF05552 Conserved TM helix YPZ3_0805 PF00924 Mechanosensitive ion channel YPZ3_0806 PF01810 LysE type translocator YPZ3_0807 PF04402 Protein of unknown function (DUF541) YPZ3_0808 PF03466 LysR substrate binding domain YPZ3_0808 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_0809 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPZ3_0810 PF01842 ACT domain YPZ3_0810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPZ3_0810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_0811 PF01812 5-formyltetrahydrofolate cyclo-ligase family YPZ3_0812 PF05164 Cell division protein ZapA YPZ3_0813 PF03695 Uncharacterised protein family (UPF0149) YPZ3_0814 PF05195 Aminopeptidase P, N-terminal domain YPZ3_0814 PF00557 Metallopeptidase family M24 YPZ3_0815 PF01494 FAD binding domain YPZ3_0816 PF01494 FAD binding domain YPZ3_0817 PF01571 Aminomethyltransferase folate-binding domain YPZ3_0817 PF08669 Glycine cleavage T-protein C-terminal barrel domain YPZ3_0818 PF01597 Glycine cleavage H-protein YPZ3_0819 PF02347 Glycine cleavage system P-protein YPZ3_0821 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_0821 PF03895 YadA-like membrane anchor domain YPZ3_0821 PF05658 Head domain of trimeric autotransporter adhesin YPZ3_0821 PF05662 Coiled stalk of trimeric autotransporter adhesin YPZ3_0823 PF03006 Haemolysin-III related YPZ3_0825 PF01571 Aminomethyltransferase folate-binding domain YPZ3_0826 PF07254 Membrane-bound toxin component of toxin-antitoxin system YPZ3_0827 PF00486 Transcriptional regulatory protein, C terminal YPZ3_0827 PF00072 Response regulator receiver domain YPZ3_0828 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_0828 PF00672 HAMP domain YPZ3_0828 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_0829 PF06123 Inner membrane protein CreD YPZ3_0830 PF00258 Flavodoxin YPZ3_0831 PF00589 Phage integrase family YPZ3_0831 PF02899 Phage integrase, N-terminal SAM-like domain YPZ3_0832 PF10411 Disulfide bond isomerase protein N-terminus YPZ3_0832 PF13098 Thioredoxin-like domain YPZ3_0833 PF17768 RecJ OB domain YPZ3_0833 PF02272 DHHA1 domain YPZ3_0833 PF01368 DHH family YPZ3_0834 PF03462 PCRF domain YPZ3_0834 PF00472 RF-1 domain YPZ3_0835 PF00152 tRNA synthetases class II (D, K and N) YPZ3_0835 PF01336 OB-fold nucleic acid binding domain YPZ3_0836 PF00589 Phage integrase family YPZ3_0836 PF13356 Arm DNA-binding domain YPZ3_0836 PF14659 Phage integrase, N-terminal SAM-like domain YPZ3_0838 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA YPZ3_0850 PF03551 Transcriptional regulator PadR-like family YPZ3_0851 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPZ3_0853 PF13407 Periplasmic binding protein domain YPZ3_0854 PF02653 Branched-chain amino acid transport system / permease component YPZ3_0855 PF00005 ABC transporter YPZ3_0856 PF17912 MalK OB fold domain YPZ3_0856 PF00005 ABC transporter YPZ3_0857 PF13416 Bacterial extracellular solute-binding protein YPZ3_0858 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_0859 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_0860 PF07745 Glycosyl hydrolase family 53 YPZ3_0861 PF02449 Beta-galactosidase YPZ3_0861 PF08533 Beta-galactosidase C-terminal domain YPZ3_0861 PF08532 Beta-galactosidase trimerisation domain YPZ3_0862 PF02378 Phosphotransferase system, EIIC YPZ3_0862 PF00367 phosphotransferase system, EIIB YPZ3_0863 PF02264 LamB porin YPZ3_0864 PF00356 Bacterial regulatory proteins, lacI family YPZ3_0865 PF13802 Galactose mutarotase-like YPZ3_0865 PF16338 Domain of unknown function (DUF4968) YPZ3_0865 PF17137 Domain of unknown function (DUF5110) YPZ3_0865 PF01055 Glycosyl hydrolases family 31 YPZ3_0866 PF07690 Major Facilitator Superfamily YPZ3_0867 PF00356 Bacterial regulatory proteins, lacI family YPZ3_0869 PF01116 Fructose-bisphosphate aldolase class-II YPZ3_0871 PF00884 Sulfatase YPZ3_0872 PF04055 Radical SAM superfamily YPZ3_0872 PF13186 Iron-sulfur cluster-binding domain YPZ3_0875 PF01979 Amidohydrolase family YPZ3_0876 PF03610 PTS system fructose IIA component YPZ3_0877 PF03613 PTS system mannose/fructose/sorbose family IID component YPZ3_0878 PF03609 PTS system sorbose-specific iic component YPZ3_0879 PF03830 PTS system sorbose subfamily IIB component YPZ3_0880 PF01380 SIS domain YPZ3_0881 PF08013 Tagatose 6 phosphate kinase YPZ3_0882 PF08220 DeoR-like helix-turn-helix domain YPZ3_0882 PF00455 DeoR C terminal sensor domain YPZ3_0883 PF00884 Sulfatase YPZ3_0884 PF01797 Transposase IS200 like YPZ3_0885 PF02796 Helix-turn-helix domain of resolvase YPZ3_0885 PF00665 Integrase core domain YPZ3_0886 PF01695 IstB-like ATP binding protein YPZ3_0887 PF09092 Lyase, N terminal YPZ3_0887 PF02278 Polysaccharide lyase family 8, super-sandwich domain YPZ3_0887 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YPZ3_0887 PF09093 Lyase, catalytic YPZ3_0890 PF00484 Carbonic anhydrase YPZ3_0893 PF03958 Bacterial type II/III secretion system short domain YPZ3_0893 PF00263 Bacterial type II and III secretion system protein YPZ3_0895 PF00482 Type II secretion system (T2SS), protein F YPZ3_0896 PF07963 Prokaryotic N-terminal methylation motif YPZ3_0896 PF08334 Type II secretion system (T2SS), protein G YPZ3_0900 PF06750 Bacterial Peptidase A24 N-terminal domain YPZ3_0900 PF01478 Type IV leader peptidase family YPZ3_0903 PF02203 Tar ligand binding domain homologue YPZ3_0903 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_0903 PF00672 HAMP domain YPZ3_0906 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_0906 PF03466 LysR substrate binding domain YPZ3_0907 PF07690 Major Facilitator Superfamily YPZ3_0908 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_0908 PF03466 LysR substrate binding domain YPZ3_0909 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YPZ3_0909 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPZ3_0910 PF00356 Bacterial regulatory proteins, lacI family YPZ3_0911 PF01568 Molydopterin dinucleotide binding domain YPZ3_0911 PF00384 Molybdopterin oxidoreductase YPZ3_0912 PF00501 AMP-binding enzyme YPZ3_0912 PF13193 AMP-binding enzyme C-terminal domain YPZ3_0912 PF01553 Acyltransferase YPZ3_0913 PF07690 Major Facilitator Superfamily YPZ3_0914 PF00248 Aldo/keto reductase family YPZ3_0915 PF02976 DNA mismatch repair enzyme MutH YPZ3_0916 PF00293 NUDIX domain YPZ3_0917 PF00391 PEP-utilising enzyme, mobile domain YPZ3_0917 PF02896 PEP-utilising enzyme, TIM barrel domain YPZ3_0917 PF01590 GAF domain YPZ3_0917 PF05524 PEP-utilising enzyme, N-terminal YPZ3_0918 PF01790 Prolipoprotein diacylglyceryl transferase YPZ3_0919 PF00303 Thymidylate synthase YPZ3_0920 PF00665 Integrase core domain YPZ3_0920 PF02796 Helix-turn-helix domain of resolvase YPZ3_0921 PF02796 Helix-turn-helix domain of resolvase YPZ3_0921 PF00665 Integrase core domain YPZ3_0922 PF01695 IstB-like ATP binding protein YPZ3_0926 PF17946 RecC C-terminal domain YPZ3_0927 PF16187 Middle or third domain of peptidase_M16 YPZ3_0927 PF00675 Insulinase (Peptidase family M16) YPZ3_0927 PF05193 Peptidase M16 inactive domain YPZ3_0928 PF12705 PD-(D/E)XK nuclease superfamily YPZ3_0928 PF00580 UvrD/REP helicase N-terminal domain YPZ3_0928 PF13361 UvrD-like helicase C-terminal domain YPZ3_0929 PF13538 UvrD-like helicase C-terminal domain YPZ3_0930 PF00696 Amino acid kinase family YPZ3_0930 PF00583 Acetyltransferase (GNAT) family YPZ3_0931 PF11741 AMIN domain YPZ3_0931 PF01520 N-acetylmuramoyl-L-alanine amidase YPZ3_0932 PF06725 3D domain YPZ3_0932 PF03562 MltA specific insert domain YPZ3_0933 PF00899 ThiF family YPZ3_0934 PF02657 Fe-S metabolism associated domain YPZ3_0935 PF00266 Aminotransferase class-V YPZ3_0936 PF03466 LysR substrate binding domain YPZ3_0936 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_0937 PF04241 Protein of unknown function (DUF423) YPZ3_0938 PF01728 FtsJ-like methyltransferase YPZ3_0938 PF18125 RlmM ferredoxin-like domain YPZ3_0939 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPZ3_0939 PF01367 5'-3' exonuclease, C-terminal SAM fold YPZ3_0940 PF03641 Possible lysine decarboxylase YPZ3_0940 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YPZ3_0940 PF11892 Domain of unknown function (DUF3412) YPZ3_0941 PF14489 QueF-like protein YPZ3_0941 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YPZ3_0942 PF07348 Syd protein (SUKH-2) YPZ3_0943 PF01797 Transposase IS200 like YPZ3_0944 PF04287 tRNA pseudouridine synthase C YPZ3_0945 PF00849 RNA pseudouridylate synthase YPZ3_0946 PF00258 Flavodoxin YPZ3_0947 PF11944 Protein of unknown function (DUF3461) YPZ3_0948 PF14602 Hexapeptide repeat of succinyl-transferase YPZ3_0948 PF00132 Bacterial transferase hexapeptide (six repeats) YPZ3_0948 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YPZ3_0949 PF01909 Nucleotidyltransferase domain YPZ3_0949 PF01966 HD domain YPZ3_0949 PF08335 GlnD PII-uridylyltransferase YPZ3_0949 PF01842 ACT domain YPZ3_0950 PF00557 Metallopeptidase family M24 YPZ3_0951 PF00318 Ribosomal protein S2 YPZ3_0952 PF00889 Elongation factor TS YPZ3_0953 PF00696 Amino acid kinase family YPZ3_0954 PF01765 Ribosome recycling factor YPZ3_0955 PF13288 DXP reductoisomerase C-terminal domain YPZ3_0955 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPZ3_0955 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YPZ3_0956 PF01255 Putative undecaprenyl diphosphate synthase YPZ3_0958 PF17820 PDZ domain YPZ3_0958 PF02163 Peptidase family M50 YPZ3_0959 PF01103 Surface antigen YPZ3_0959 PF07244 Surface antigen variable number repeat YPZ3_0960 PF03938 Outer membrane protein (OmpH-like) YPZ3_0961 PF00132 Bacterial transferase hexapeptide (six repeats) YPZ3_0961 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YPZ3_0962 PF07977 FabA-like domain YPZ3_0963 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YPZ3_0963 PF00132 Bacterial transferase hexapeptide (six repeats) YPZ3_0964 PF02684 Lipid-A-disaccharide synthetase YPZ3_0965 PF01351 Ribonuclease HII YPZ3_0966 PF14579 Helix-hairpin-helix motif YPZ3_0966 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPZ3_0966 PF01336 OB-fold nucleic acid binding domain YPZ3_0966 PF02811 PHP domain YPZ3_0966 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPZ3_0967 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YPZ3_0968 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPZ3_0969 PF09179 TilS substrate binding domain YPZ3_0969 PF11734 TilS substrate C-terminal domain YPZ3_0969 PF01171 PP-loop family YPZ3_0970 PF00034 Cytochrome c YPZ3_0971 PF07152 YaeQ protein YPZ3_0972 PF00472 RF-1 domain YPZ3_0973 PF04170 NlpE N-terminal domain YPZ3_0973 PF17185 NlpE C-terminal OB domain YPZ3_0974 PF03129 Anticodon binding domain YPZ3_0974 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPZ3_0974 PF04073 Aminoacyl-tRNA editing domain YPZ3_0975 PF01980 tRNA-methyltransferase O YPZ3_0975 PF18389 TrmO C-terminal domain YPZ3_0976 PF16358 RcsF lipoprotein YPZ3_0977 PF03180 NLPA lipoprotein YPZ3_0978 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_0979 PF09383 NIL domain YPZ3_0979 PF00005 ABC transporter YPZ3_0981 PF00248 Aldo/keto reductase family YPZ3_0983 PF03372 Endonuclease/Exonuclease/phosphatase family YPZ3_0984 PF01476 LysM domain YPZ3_0984 PF01464 Transglycosylase SLT domain YPZ3_0985 PF00753 Metallo-beta-lactamase superfamily YPZ3_0985 PF16123 Hydroxyacylglutathione hydrolase C-terminus YPZ3_0986 PF08241 Methyltransferase domain YPZ3_0987 PF00075 RNase H YPZ3_0988 PF00929 Exonuclease YPZ3_0989 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YPZ3_0990 PF01695 IstB-like ATP binding protein YPZ3_0991 PF02796 Helix-turn-helix domain of resolvase YPZ3_0991 PF00665 Integrase core domain YPZ3_0998 PF00589 Phage integrase family YPZ3_0998 PF13356 Arm DNA-binding domain YPZ3_1000 PF01668 SmpB protein YPZ3_1001 PF03364 Polyketide cyclase / dehydrase and lipid transport YPZ3_1002 PF04355 SmpA / OmlA family YPZ3_1003 PF02463 RecF/RecN/SMC N terminal domain YPZ3_1004 PF01513 ATP-NAD kinase YPZ3_1005 PF01025 GrpE YPZ3_1006 PF00285 Citrate synthase, C-terminal domain YPZ3_1007 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPZ3_1008 PF02910 Fumarate reductase flavoprotein C-term YPZ3_1008 PF00890 FAD binding domain YPZ3_1009 PF13085 2Fe-2S iron-sulfur cluster binding domain YPZ3_1010 PF02779 Transketolase, pyrimidine binding domain YPZ3_1010 PF16078 2-oxoglutarate dehydrogenase N-terminus YPZ3_1010 PF00676 Dehydrogenase E1 component YPZ3_1010 PF16870 2-oxoglutarate dehydrogenase C-terminal YPZ3_1011 PF02817 e3 binding domain YPZ3_1011 PF00364 Biotin-requiring enzyme YPZ3_1011 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPZ3_1012 PF00549 CoA-ligase YPZ3_1012 PF08442 ATP-grasp domain YPZ3_1013 PF00549 CoA-ligase YPZ3_1013 PF02629 CoA binding domain YPZ3_1014 PF01654 Cytochrome bd terminal oxidase subunit I YPZ3_1015 PF02322 Cytochrome bd terminal oxidase subunit II YPZ3_1016 PF01618 MotA/TolQ/ExbB proton channel family YPZ3_1017 PF02472 Biopolymer transport protein ExbD/TolR YPZ3_1018 PF06519 TolA C-terminal YPZ3_1018 PF06519 TolA C-terminal YPZ3_1019 PF07676 WD40-like Beta Propeller Repeat YPZ3_1019 PF04052 TolB amino-terminal domain YPZ3_1020 PF00691 OmpA family YPZ3_1021 PF16331 TolA binding protein trimerisation YPZ3_1021 PF13174 Tetratricopeptide repeat YPZ3_1022 PF02445 Quinolinate synthetase A protein YPZ3_1023 PF04973 Nicotinamide mononucleotide transporter YPZ3_1024 PF01545 Cation efflux family YPZ3_1025 PF00793 DAHP synthetase I family YPZ3_1026 PF01695 IstB-like ATP binding protein YPZ3_1027 PF00665 Integrase core domain YPZ3_1027 PF02796 Helix-turn-helix domain of resolvase YPZ3_1028 PF00300 Histidine phosphatase superfamily (branch 1) YPZ3_1030 PF01263 Aldose 1-epimerase YPZ3_1031 PF08544 GHMP kinases C terminal YPZ3_1031 PF00288 GHMP kinases N terminal domain YPZ3_1031 PF10509 Galactokinase galactose-binding signature YPZ3_1032 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YPZ3_1032 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YPZ3_1033 PF16363 GDP-mannose 4,6 dehydratase YPZ3_1035 PF00005 ABC transporter YPZ3_1036 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_1036 PF03459 TOBE domain YPZ3_1038 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1039 PF03459 TOBE domain YPZ3_1039 PF00005 ABC transporter YPZ3_1041 PF10282 Lactonase, 7-bladed beta-propeller YPZ3_1042 PF00202 Aminotransferase class-III YPZ3_1043 PF06968 Biotin and Thiamin Synthesis associated domain YPZ3_1043 PF04055 Radical SAM superfamily YPZ3_1044 PF00155 Aminotransferase class I and II YPZ3_1045 PF08241 Methyltransferase domain YPZ3_1048 PF02151 UvrB/uvrC motif YPZ3_1048 PF04851 Type III restriction enzyme, res subunit YPZ3_1048 PF00271 Helicase conserved C-terminal domain YPZ3_1048 PF17757 UvrB interaction domain YPZ3_1048 PF12344 Ultra-violet resistance protein B YPZ3_1049 PF01933 Uncharacterised protein family UPF0052 YPZ3_1050 PF04055 Radical SAM superfamily YPZ3_1050 PF06463 Molybdenum Cofactor Synthesis C YPZ3_1051 PF01967 MoaC family YPZ3_1052 PF02391 MoaE protein YPZ3_1053 PF01027 Inhibitor of apoptosis-promoting Bax1 YPZ3_1054 PF01797 Transposase IS200 like YPZ3_1055 PF05199 GMC oxidoreductase YPZ3_1055 PF00732 GMC oxidoreductase YPZ3_1056 PF00171 Aldehyde dehydrogenase family YPZ3_1057 PF13977 BetI-type transcriptional repressor, C-terminal YPZ3_1057 PF00440 Bacterial regulatory proteins, tetR family YPZ3_1058 PF02028 BCCT, betaine/carnitine/choline family transporter YPZ3_1059 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_1059 PF03466 LysR substrate binding domain YPZ3_1061 PF01048 Phosphorylase superfamily YPZ3_1062 PF03825 Nucleoside H+ symporter YPZ3_1064 PF03825 Nucleoside H+ symporter YPZ3_1065 PF13801 Heavy-metal resistance YPZ3_1066 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_1066 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_1067 PF02954 Bacterial regulatory protein, Fis family YPZ3_1067 PF00158 Sigma-54 interaction domain YPZ3_1067 PF00072 Response regulator receiver domain YPZ3_1068 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPZ3_1069 PF03466 LysR substrate binding domain YPZ3_1069 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_1073 PF00005 ABC transporter YPZ3_1074 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_1075 PF09209 Tetracyclin repressor-like, C-terminal domain YPZ3_1075 PF00440 Bacterial regulatory proteins, tetR family YPZ3_1076 PF00270 DEAD/DEAH box helicase YPZ3_1076 PF00271 Helicase conserved C-terminal domain YPZ3_1078 PF00872 Transposase, Mutator family YPZ3_1079 PF01548 Transposase YPZ3_1079 PF02371 Transposase IS116/IS110/IS902 family YPZ3_1080 PF00270 DEAD/DEAH box helicase YPZ3_1080 PF00271 Helicase conserved C-terminal domain YPZ3_1083 PF01207 Dihydrouridine synthase (Dus) YPZ3_1084 PF00768 D-alanyl-D-alanine carboxypeptidase YPZ3_1085 PF09330 D-lactate dehydrogenase, membrane binding YPZ3_1085 PF01565 FAD binding domain YPZ3_1086 PF01928 CYTH domain YPZ3_1087 PF01844 HNH endonuclease YPZ3_1089 PF00005 ABC transporter YPZ3_1091 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1092 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1093 PF07308 Protein of unknown function (DUF1456) YPZ3_1094 PF02954 Bacterial regulatory protein, Fis family YPZ3_1094 PF13188 PAS domain YPZ3_1094 PF00158 Sigma-54 interaction domain YPZ3_1095 PF02653 Branched-chain amino acid transport system / permease component YPZ3_1096 PF02653 Branched-chain amino acid transport system / permease component YPZ3_1097 PF00005 ABC transporter YPZ3_1098 PF00005 ABC transporter YPZ3_1101 PF00581 Rhodanese-like domain YPZ3_1102 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPZ3_1103 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPZ3_1104 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1105 PF00005 ABC transporter YPZ3_1106 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1107 PF13520 Amino acid permease YPZ3_1108 PF01276 Orn/Lys/Arg decarboxylase, major domain YPZ3_1108 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPZ3_1108 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPZ3_1109 PF00892 EamA-like transporter family YPZ3_1110 PF00267 Gram-negative porin YPZ3_1111 PF13307 Helicase C-terminal domain YPZ3_1111 PF06733 DEAD_2 YPZ3_1112 PF00199 Catalase YPZ3_1112 PF06628 Catalase-related immune-responsive YPZ3_1113 PF07437 YfaZ precursor YPZ3_1114 PF03222 Tryptophan/tyrosine permease family YPZ3_1115 PF00994 Probable molybdopterin binding domain YPZ3_1116 PF03974 Ecotin YPZ3_1117 PF00268 Ribonucleotide reductase, small chain YPZ3_1118 PF00317 Ribonucleotide reductase, all-alpha domain YPZ3_1118 PF03477 ATP cone domain YPZ3_1118 PF02867 Ribonucleotide reductase, barrel domain YPZ3_1120 PF00521 DNA gyrase/topoisomerase IV, subunit A YPZ3_1120 PF03989 DNA gyrase C-terminal domain, beta-propeller YPZ3_1121 PF00072 Response regulator receiver domain YPZ3_1121 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_1121 PF09456 RcsC Alpha-Beta-Loop (ABL) YPZ3_1121 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_1122 PF00196 Bacterial regulatory proteins, luxR family YPZ3_1122 PF00072 Response regulator receiver domain YPZ3_1123 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_1123 PF01627 Hpt domain YPZ3_1123 PF16359 RcsD-ABL domain YPZ3_1124 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_1124 PF01627 Hpt domain YPZ3_1124 PF16359 RcsD-ABL domain YPZ3_1125 PF07690 Major Facilitator Superfamily YPZ3_1126 PF00267 Gram-negative porin YPZ3_1128 PF00144 Beta-lactamase YPZ3_1130 PF12706 Beta-lactamase superfamily domain YPZ3_1131 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_1131 PF00672 HAMP domain YPZ3_1131 PF02743 Cache domain YPZ3_1132 PF01278 Omptin family YPZ3_1133 PF00717 Peptidase S24-like YPZ3_1133 PF01381 Helix-turn-helix YPZ3_1134 PF06530 Phage antitermination protein Q YPZ3_1135 PF07005 Sugar-binding N-terminal domain YPZ3_1135 PF17042 Nucleotide-binding C-terminal domain YPZ3_1136 PF00596 Class II Aldolase and Adducin N-terminal domain YPZ3_1137 PF08220 DeoR-like helix-turn-helix domain YPZ3_1137 PF00455 DeoR C terminal sensor domain YPZ3_1138 PF01261 Xylose isomerase-like TIM barrel YPZ3_1140 PF17482 Phage tail sheath C-terminal domain YPZ3_1140 PF04984 Phage tail sheath protein subtilisin-like domain YPZ3_1147 PF04865 Baseplate J-like protein YPZ3_1149 PF07484 Phage Tail Collar Domain YPZ3_1150 PF01418 Helix-turn-helix domain, rpiR family YPZ3_1150 PF01380 SIS domain YPZ3_1151 PF00232 Glycosyl hydrolase family 1 YPZ3_1154 PF05638 Type VI secretion system effector, Hcp YPZ3_1156 PF00884 Sulfatase YPZ3_1156 PF11893 Domain of unknown function (DUF3413) YPZ3_1157 PF04245 37-kD nucleoid-associated bacterial protein YPZ3_1158 PF01797 Transposase IS200 like YPZ3_1159 PF00271 Helicase conserved C-terminal domain YPZ3_1159 PF04851 Type III restriction enzyme, res subunit YPZ3_1160 PF00849 RNA pseudouridylate synthase YPZ3_1160 PF01479 S4 domain YPZ3_1161 PF07690 Major Facilitator Superfamily YPZ3_1162 PF13989 YejG-like protein YPZ3_1163 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPZ3_1163 PF00005 ABC transporter YPZ3_1164 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1164 PF12911 N-terminal TM domain of oligopeptide transport permease C YPZ3_1165 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1166 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPZ3_1167 PF12792 CSS motif domain associated with EAL YPZ3_1167 PF00563 EAL domain YPZ3_1168 PF00877 NlpC/P60 family YPZ3_1169 PF01569 PAP2 superfamily YPZ3_1170 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPZ3_1170 PF07683 Cobalamin synthesis protein cobW C-terminal domain YPZ3_1171 PF07729 FCD domain YPZ3_1171 PF00392 Bacterial regulatory proteins, gntR family YPZ3_1172 PF08125 Mannitol dehydrogenase C-terminal domain YPZ3_1172 PF01232 Mannitol dehydrogenase Rossmann domain YPZ3_1173 PF03786 D-mannonate dehydratase (UxuA) YPZ3_1174 PF01132 Elongation factor P (EF-P) OB domain YPZ3_1174 PF08207 Elongation factor P (EF-P) KOW-like domain YPZ3_1174 PF09285 Elongation factor P, C-terminal YPZ3_1175 PF03222 Tryptophan/tyrosine permease family YPZ3_1177 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_1177 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPZ3_1177 PF01842 ACT domain YPZ3_1179 PF00171 Aldehyde dehydrogenase family YPZ3_1180 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPZ3_1180 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPZ3_1181 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPZ3_1183 PF00005 ABC transporter YPZ3_1184 PF02653 Branched-chain amino acid transport system / permease component YPZ3_1185 PF00293 NUDIX domain YPZ3_1186 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPZ3_1186 PF00381 PTS HPr component phosphorylation site YPZ3_1187 PF00294 pfkB family carbohydrate kinase YPZ3_1188 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPZ3_1188 PF02378 Phosphotransferase system, EIIC YPZ3_1189 PF00486 Transcriptional regulatory protein, C terminal YPZ3_1190 PF17550 Family of unknown function YPZ3_1192 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_1192 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_1193 PF00577 Outer membrane usher protein YPZ3_1193 PF13953 PapC C-terminal domain YPZ3_1193 PF13954 PapC N-terminal domain YPZ3_1194 PF01261 Xylose isomerase-like TIM barrel YPZ3_1195 PF03601 Conserved hypothetical protein 698 YPZ3_1196 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_1196 PF03466 LysR substrate binding domain YPZ3_1197 PF00324 Amino acid permease YPZ3_1199 PF01032 FecCD transport family YPZ3_1200 PF00005 ABC transporter YPZ3_1201 PF07715 TonB-dependent Receptor Plug Domain YPZ3_1201 PF00593 TonB dependent receptor YPZ3_1202 PF00043 Glutathione S-transferase, C-terminal domain YPZ3_1202 PF13417 Glutathione S-transferase, N-terminal domain YPZ3_1205 PF03180 NLPA lipoprotein YPZ3_1206 PF00005 ABC transporter YPZ3_1206 PF09383 NIL domain YPZ3_1207 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1208 PF00768 D-alanyl-D-alanine carboxypeptidase YPZ3_1208 PF07943 Penicillin-binding protein 5, C-terminal domain YPZ3_1210 PF00455 DeoR C terminal sensor domain YPZ3_1210 PF08220 DeoR-like helix-turn-helix domain YPZ3_1211 PF01791 DeoC/LacD family aldolase YPZ3_1212 PF01569 PAP2 superfamily YPZ3_1214 PF06826 Predicted Permease Membrane Region YPZ3_1214 PF02080 TrkA-C domain YPZ3_1215 PF10722 Putative bacterial sensory transduction regulator YPZ3_1216 PF13416 Bacterial extracellular solute-binding protein YPZ3_1217 PF00005 ABC transporter YPZ3_1217 PF08402 TOBE domain YPZ3_1218 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1219 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1220 PF10767 Protein of unknown function (DUF2593) YPZ3_1221 PF05958 tRNA (Uracil-5-)-methyltransferase YPZ3_1222 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_1225 PF01032 FecCD transport family YPZ3_1226 PF01032 FecCD transport family YPZ3_1227 PF00005 ABC transporter YPZ3_1228 PF03059 Nicotianamine synthase protein YPZ3_1229 PF10100 Staphylopine dehydrogenase YPZ3_1230 PF00892 EamA-like transporter family YPZ3_1231 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1232 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1233 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_1234 PF00005 ABC transporter YPZ3_1235 PF01817 Chorismate mutase type II YPZ3_1236 PF12883 Protein of unknown function (DUF3828) YPZ3_1237 PF01370 NAD dependent epimerase/dehydratase family YPZ3_1238 PF11066 Protein of unknown function (DUF2867) YPZ3_1238 PF13460 NAD(P)H-binding YPZ3_1239 PF01212 Beta-eliminating lyase YPZ3_1240 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPZ3_1240 PF00205 Thiamine pyrophosphate enzyme, central domain YPZ3_1240 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPZ3_1241 PF00970 Oxidoreductase FAD-binding domain YPZ3_1241 PF00175 Oxidoreductase NAD-binding domain YPZ3_1241 PF00111 2Fe-2S iron-sulfur cluster binding domain YPZ3_1242 PF03063 Prismane/CO dehydrogenase family YPZ3_1243 PF03956 Lysine exporter LysO YPZ3_1244 PF11398 Protein of unknown function (DUF2813) YPZ3_1245 PF04393 Protein of unknown function (DUF535) YPZ3_1246 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_1247 PF00005 ABC transporter YPZ3_1247 PF02687 FtsX-like permease family YPZ3_1247 PF12704 MacB-like periplasmic core domain YPZ3_1248 PF02617 ATP-dependent Clp protease adaptor protein ClpS YPZ3_1249 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_1249 PF02861 Clp amino terminal domain, pathogenicity island component YPZ3_1249 PF17871 AAA lid domain YPZ3_1249 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_1249 PF07724 AAA domain (Cdc48 subfamily) YPZ3_1250 PF01797 Transposase IS200 like YPZ3_1251 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YPZ3_1252 PF00005 ABC transporter YPZ3_1252 PF00664 ABC transporter transmembrane region YPZ3_1253 PF00664 ABC transporter transmembrane region YPZ3_1253 PF00005 ABC transporter YPZ3_1254 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_1255 PF01037 Lrp/AsnC ligand binding domain YPZ3_1256 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YPZ3_1256 PF17854 FtsK alpha domain YPZ3_1256 PF09397 Ftsk gamma domain YPZ3_1256 PF01580 FtsK/SpoIIIE family YPZ3_1257 PF03548 Outer membrane lipoprotein carrier protein LolA YPZ3_1258 PF12002 MgsA AAA+ ATPase C terminal YPZ3_1258 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_1258 PF16193 AAA C-terminal domain YPZ3_1259 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPZ3_1259 PF02403 Seryl-tRNA synthetase N-terminal domain YPZ3_1260 PF07690 Major Facilitator Superfamily YPZ3_1261 PF04055 Radical SAM superfamily YPZ3_1263 PF02901 Pyruvate formate lyase-like YPZ3_1263 PF01228 Glycine radical YPZ3_1264 PF01226 Formate/nitrite transporter YPZ3_1265 PF18381 YcaO cyclodehydratase C-terminal domain YPZ3_1265 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YPZ3_1266 PF00710 Asparaginase, N-terminal YPZ3_1266 PF17763 Glutaminase/Asparaginase C-terminal domain YPZ3_1267 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_1267 PF03895 YadA-like membrane anchor domain YPZ3_1267 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_1267 PF05658 Head domain of trimeric autotransporter adhesin YPZ3_1267 PF05662 Coiled stalk of trimeric autotransporter adhesin YPZ3_1267 PF05662 Coiled stalk of trimeric autotransporter adhesin YPZ3_1267 PF05658 Head domain of trimeric autotransporter adhesin YPZ3_1267 PF03895 YadA-like membrane anchor domain YPZ3_1269 PF00266 Aminotransferase class-V YPZ3_1270 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPZ3_1271 PF02224 Cytidylate kinase YPZ3_1272 PF00575 S1 RNA binding domain YPZ3_1273 PF00753 Metallo-beta-lactamase superfamily YPZ3_1273 PF03772 Competence protein YPZ3_1274 PF00005 ABC transporter YPZ3_1274 PF00664 ABC transporter transmembrane region YPZ3_1275 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YPZ3_1276 PF07063 Domain of unknown function (DUF1338) YPZ3_1277 PF02348 Cytidylyltransferase YPZ3_1278 PF01636 Phosphotransferase enzyme family YPZ3_1280 PF17192 MukF middle domain YPZ3_1280 PF17193 MukF C-terminal domain YPZ3_1280 PF03882 MukF winged-helix domain YPZ3_1281 PF04288 MukE-like family YPZ3_1282 PF04310 MukB N-terminal YPZ3_1282 PF16330 MukB hinge domain YPZ3_1284 PF03734 L,D-transpeptidase catalytic domain YPZ3_1284 PF01471 Putative peptidoglycan binding domain YPZ3_1285 PF05951 Bacterial protein of unknown function (DUF882) YPZ3_1286 PF00753 Metallo-beta-lactamase superfamily YPZ3_1287 PF00155 Aminotransferase class I and II YPZ3_1288 PF00267 Gram-negative porin YPZ3_1289 PF00152 tRNA synthetases class II (D, K and N) YPZ3_1289 PF01336 OB-fold nucleic acid binding domain YPZ3_1290 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YPZ3_1290 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YPZ3_1291 PF11940 Domain of unknown function (DUF3458) Ig-like fold YPZ3_1291 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YPZ3_1291 PF01433 Peptidase family M1 domain YPZ3_1292 PF01180 Dihydroorotate dehydrogenase YPZ3_1293 PF07126 Cell-division protein ZapC YPZ3_1294 PF03476 MOSC N-terminal beta barrel domain YPZ3_1294 PF03473 MOSC domain YPZ3_1294 PF00111 2Fe-2S iron-sulfur cluster binding domain YPZ3_1295 PF02926 THUMP domain YPZ3_1295 PF10672 S-adenosylmethionine-dependent methyltransferase YPZ3_1295 PF01170 Putative RNA methylase family UPF0020 YPZ3_1296 PF12848 ABC transporter YPZ3_1296 PF16326 ABC transporter C-terminal domain YPZ3_1296 PF00005 ABC transporter YPZ3_1297 PF04403 Paraquat-inducible protein A YPZ3_1298 PF02470 MlaD protein YPZ3_1299 PF03886 ABC-type transport auxiliary lipoprotein component YPZ3_1300 PF01797 Transposase IS200 like YPZ3_1301 PF00109 Beta-ketoacyl synthase, N-terminal domain YPZ3_1301 PF02801 Beta-ketoacyl synthase, C-terminal domain YPZ3_1302 PF01695 IstB-like ATP binding protein YPZ3_1303 PF00665 Integrase core domain YPZ3_1303 PF02796 Helix-turn-helix domain of resolvase YPZ3_1304 PF00109 Beta-ketoacyl synthase, N-terminal domain YPZ3_1304 PF02801 Beta-ketoacyl synthase, C-terminal domain YPZ3_1305 PF07977 FabA-like domain YPZ3_1306 PF13654 AAA domain YPZ3_1306 PF05362 Lon protease (S16) C-terminal proteolytic domain YPZ3_1307 PF17414 MatP C-terminal ribbon-helix-helix domain YPZ3_1307 PF06303 MatP N-terminal domain YPZ3_1308 PF01797 Transposase IS200 like YPZ3_1309 PF00691 OmpA family YPZ3_1309 PF01389 OmpA-like transmembrane domain YPZ3_1310 PF03846 Cell division inhibitor SulA YPZ3_1311 PF04993 TfoX N-terminal domain YPZ3_1311 PF04994 TfoX C-terminal domain YPZ3_1312 PF12805 FUSC-like inner membrane protein yccS YPZ3_1313 PF03733 Inner membrane component domain YPZ3_1314 PF12462 DNA helicase IV / RNA helicase N terminal YPZ3_1314 PF00580 UvrD/REP helicase N-terminal domain YPZ3_1314 PF13361 UvrD-like helicase C-terminal domain YPZ3_1315 PF02142 MGS-like domain YPZ3_1316 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YPZ3_1317 PF13380 CoA binding domain YPZ3_1318 PF08755 Hemimethylated DNA-binding protein YccV like YPZ3_1319 PF17785 PUA-like domain YPZ3_1319 PF10672 S-adenosylmethionine-dependent methyltransferase YPZ3_1320 PF04358 DsrC like protein YPZ3_1323 PF08031 Berberine and berberine like YPZ3_1323 PF01565 FAD binding domain YPZ3_1325 PF07977 FabA-like domain YPZ3_1326 PF00109 Beta-ketoacyl synthase, N-terminal domain YPZ3_1326 PF02801 Beta-ketoacyl synthase, C-terminal domain YPZ3_1328 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YPZ3_1328 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YPZ3_1330 PF00378 Enoyl-CoA hydratase/isomerase YPZ3_1333 PF00698 Acyl transferase domain YPZ3_1338 PF00691 OmpA family YPZ3_1338 PF05736 OprF membrane domain YPZ3_1340 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_1340 PF07724 AAA domain (Cdc48 subfamily) YPZ3_1340 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_1340 PF17871 AAA lid domain YPZ3_1347 PF13358 DDE superfamily endonuclease YPZ3_1347 PF13592 Winged helix-turn helix YPZ3_1359 PF12848 ABC transporter YPZ3_1359 PF00005 ABC transporter YPZ3_1361 PF00872 Transposase, Mutator family YPZ3_1362 PF00899 ThiF family YPZ3_1363 PF03453 MoeA N-terminal region (domain I and II) YPZ3_1363 PF03454 MoeA C-terminal region (domain IV) YPZ3_1363 PF00994 Probable molybdopterin binding domain YPZ3_1365 PF00005 ABC transporter YPZ3_1366 PF13533 Biotin-lipoyl like YPZ3_1368 PF00756 Putative esterase YPZ3_1369 PF00107 Zinc-binding dehydrogenase YPZ3_1369 PF08240 Alcohol dehydrogenase GroES-like domain YPZ3_1370 PF03466 LysR substrate binding domain YPZ3_1370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_1371 PF06779 Uncharacterised MFS-type transporter YbfB YPZ3_1372 PF01227 GTP cyclohydrolase I YPZ3_1373 PF04235 Protein of unknown function (DUF418) YPZ3_1374 PF13407 Periplasmic binding protein domain YPZ3_1375 PF00005 ABC transporter YPZ3_1376 PF02653 Branched-chain amino acid transport system / permease component YPZ3_1377 PF02698 DUF218 domain YPZ3_1378 PF03949 Malic enzyme, NAD binding domain YPZ3_1378 PF00390 Malic enzyme, N-terminal domain YPZ3_1379 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YPZ3_1379 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPZ3_1380 PF04172 LrgB-like family YPZ3_1381 PF03788 LrgA family YPZ3_1382 PF07690 Major Facilitator Superfamily YPZ3_1386 PF01797 Transposase IS200 like YPZ3_1387 PF01588 Putative tRNA binding domain YPZ3_1387 PF09334 tRNA synthetases class I (M) YPZ3_1388 PF10609 NUBPL iron-transfer P-loop NTPase YPZ3_1389 PF00485 Phosphoribulokinase / Uridine kinase family YPZ3_1390 PF00692 dUTPase YPZ3_1391 PF05170 AsmA family YPZ3_1392 PF03741 Integral membrane protein TerC family YPZ3_1392 PF00571 CBS domain YPZ3_1392 PF03471 Transporter associated domain YPZ3_1393 PF06276 Ferric iron reductase FhuF-like transporter YPZ3_1393 PF11575 FhuF 2Fe-2S C-terminal domain YPZ3_1394 PF00282 Pyridoxal-dependent decarboxylase conserved domain YPZ3_1395 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPZ3_1397 PF06276 Ferric iron reductase FhuF-like transporter YPZ3_1397 PF04183 IucA / IucC family YPZ3_1398 PF00005 ABC transporter YPZ3_1399 PF01032 FecCD transport family YPZ3_1400 PF01032 FecCD transport family YPZ3_1401 PF01497 Periplasmic binding protein YPZ3_1402 PF00593 TonB dependent receptor YPZ3_1402 PF07715 TonB-dependent Receptor Plug Domain YPZ3_1402 PF07660 Secretin and TonB N terminus short domain YPZ3_1403 PF04183 IucA / IucC family YPZ3_1403 PF06276 Ferric iron reductase FhuF-like transporter YPZ3_1404 PF00483 Nucleotidyl transferase YPZ3_1405 PF00483 Nucleotidyl transferase YPZ3_1406 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YPZ3_1406 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPZ3_1407 PF01502 Phosphoribosyl-AMP cyclohydrolase YPZ3_1407 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YPZ3_1408 PF00977 Histidine biosynthesis protein YPZ3_1409 PF00977 Histidine biosynthesis protein YPZ3_1410 PF00117 Glutamine amidotransferase class-I YPZ3_1411 PF00475 Imidazoleglycerol-phosphate dehydratase YPZ3_1412 PF00155 Aminotransferase class I and II YPZ3_1413 PF00815 Histidinol dehydrogenase YPZ3_1414 PF01634 ATP phosphoribosyltransferase YPZ3_1414 PF08029 HisG, C-terminal domain YPZ3_1415 PF01370 NAD dependent epimerase/dehydratase family YPZ3_1417 PF02653 Branched-chain amino acid transport system / permease component YPZ3_1418 PF00005 ABC transporter YPZ3_1419 PF00005 ABC transporter YPZ3_1420 PF00465 Iron-containing alcohol dehydrogenase YPZ3_1421 PF13520 Amino acid permease YPZ3_1422 PF08411 Exonuclease C-terminal YPZ3_1422 PF00929 Exonuclease YPZ3_1424 PF04363 Protein of unknown function (DUF496) YPZ3_1425 PF00872 Transposase, Mutator family YPZ3_1426 PF02369 Bacterial Ig-like domain (group 1) YPZ3_1426 PF09134 Invasin, domain 3 YPZ3_1426 PF11924 Inverse autotransporter, beta-domain YPZ3_1427 PF07690 Major Facilitator Superfamily YPZ3_1428 PF04134 Protein of unknown function, DUF393 YPZ3_1430 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPZ3_1431 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPZ3_1431 PF13378 Enolase C-terminal domain-like YPZ3_1432 PF01070 FMN-dependent dehydrogenase YPZ3_1433 PF00764 Arginosuccinate synthase YPZ3_1434 PF01554 MatE YPZ3_1436 PF01522 Polysaccharide deacetylase YPZ3_1438 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YPZ3_1439 PF00196 Bacterial regulatory proteins, luxR family YPZ3_1439 PF00072 Response regulator receiver domain YPZ3_1440 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YPZ3_1442 PF03480 Bacterial extracellular solute-binding protein, family 7 YPZ3_1443 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YPZ3_1443 PF01648 4'-phosphopantetheinyl transferase superfamily YPZ3_1444 PF16874 Glycosyl hydrolase family 36 C-terminal domain YPZ3_1444 PF16875 Glycosyl hydrolase family 36 N-terminal domain YPZ3_1445 PF01306 LacY proton/sugar symporter YPZ3_1446 PF00872 Transposase, Mutator family YPZ3_1447 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_1448 PF14002 YniB-like protein YPZ3_1450 PF00950 ABC 3 transport family YPZ3_1451 PF00950 ABC 3 transport family YPZ3_1452 PF00005 ABC transporter YPZ3_1453 PF01297 Zinc-uptake complex component A periplasmic YPZ3_1454 PF01464 Transglycosylase SLT domain YPZ3_1455 PF01914 MarC family integral membrane protein YPZ3_1456 PF03129 Anticodon binding domain YPZ3_1456 PF02824 TGS domain YPZ3_1456 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPZ3_1456 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPZ3_1457 PF05198 Translation initiation factor IF-3, N-terminal domain YPZ3_1457 PF00707 Translation initiation factor IF-3, C-terminal domain YPZ3_1458 PF00453 Ribosomal protein L20 YPZ3_1459 PF01409 tRNA synthetases class II core domain (F) YPZ3_1459 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YPZ3_1460 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YPZ3_1460 PF03484 tRNA synthetase B5 domain YPZ3_1460 PF03483 B3/4 domain YPZ3_1460 PF01588 Putative tRNA binding domain YPZ3_1460 PF03147 Ferredoxin-fold anticodon binding domain YPZ3_1462 PF01032 FecCD transport family YPZ3_1463 PF00255 Glutathione peroxidase YPZ3_1464 PF00005 ABC transporter YPZ3_1465 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPZ3_1466 PF00535 Glycosyl transferase family 2 YPZ3_1467 PF00551 Formyl transferase YPZ3_1467 PF02911 Formyl transferase, C-terminal domain YPZ3_1467 PF01370 NAD dependent epimerase/dehydratase family YPZ3_1468 PF01522 Polysaccharide deacetylase YPZ3_1469 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YPZ3_1470 PF00892 EamA-like transporter family YPZ3_1472 PF00877 NlpC/P60 family YPZ3_1473 PF10437 Bacterial lipoate protein ligase C-terminus YPZ3_1473 PF03099 Biotin/lipoate A/B protein ligase family YPZ3_1474 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YPZ3_1475 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YPZ3_1476 PF00793 DAHP synthetase I family YPZ3_1477 PF03618 Kinase/pyrophosphorylase YPZ3_1478 PF00391 PEP-utilising enzyme, mobile domain YPZ3_1478 PF02896 PEP-utilising enzyme, TIM barrel domain YPZ3_1478 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YPZ3_1479 PF01594 AI-2E family transporter YPZ3_1480 PF02913 FAD linked oxidases, C-terminal domain YPZ3_1480 PF13183 4Fe-4S dicluster domain YPZ3_1480 PF01565 FAD binding domain YPZ3_1481 PF03061 Thioesterase superfamily YPZ3_1482 PF01521 Iron-sulphur cluster biosynthesis YPZ3_1483 PF01458 Uncharacterized protein family (UPF0051) YPZ3_1484 PF00005 ABC transporter YPZ3_1485 PF01458 Uncharacterized protein family (UPF0051) YPZ3_1486 PF00266 Aminotransferase class-V YPZ3_1487 PF02657 Fe-S metabolism associated domain YPZ3_1488 PF01476 LysM domain YPZ3_1488 PF17969 L,D-transpeptidase C-terminal domain YPZ3_1488 PF03734 L,D-transpeptidase catalytic domain YPZ3_1489 PF01695 IstB-like ATP binding protein YPZ3_1490 PF02796 Helix-turn-helix domain of resolvase YPZ3_1490 PF00665 Integrase core domain YPZ3_1492 PF02887 Pyruvate kinase, alpha/beta domain YPZ3_1492 PF00224 Pyruvate kinase, barrel domain YPZ3_1493 PF01554 MatE YPZ3_1494 PF00677 Lumazine binding domain YPZ3_1496 PF07690 Major Facilitator Superfamily YPZ3_1497 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_1497 PF03466 LysR substrate binding domain YPZ3_1498 PF00356 Bacterial regulatory proteins, lacI family YPZ3_1499 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPZ3_1499 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPZ3_1500 PF00877 NlpC/P60 family YPZ3_1501 PF00462 Glutaredoxin YPZ3_1502 PF00929 Exonuclease YPZ3_1503 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPZ3_1504 PF14431 YwqJ-like deaminase YPZ3_1504 PF18807 Tripartite Tc toxins repeat YPZ3_1505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPZ3_1506 PF00440 Bacterial regulatory proteins, tetR family YPZ3_1506 PF16925 Tetracyclin repressor-like, C-terminal domain YPZ3_1507 PF00884 Sulfatase YPZ3_1507 PF08019 Phosphoethanolamine transferase EptA/EptB YPZ3_1508 PF00248 Aldo/keto reductase family YPZ3_1509 PF01047 MarR family YPZ3_1510 PF05433 Glycine zipper 2TM domain YPZ3_1511 PF03702 Anhydro-N-acetylmuramic acid kinase YPZ3_1512 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YPZ3_1513 PF01243 Pyridoxamine 5'-phosphate oxidase YPZ3_1513 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YPZ3_1514 PF00579 tRNA synthetases class I (W and Y) YPZ3_1514 PF01479 S4 domain YPZ3_1515 PF08543 Phosphomethylpyrimidine kinase YPZ3_1516 PF00043 Glutathione S-transferase, C-terminal domain YPZ3_1516 PF02798 Glutathione S-transferase, N-terminal domain YPZ3_1517 PF04893 Yip1 domain YPZ3_1518 PF00854 POT family YPZ3_1520 PF00005 ABC transporter YPZ3_1521 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPZ3_1521 PF00005 ABC transporter YPZ3_1522 PF12911 N-terminal TM domain of oligopeptide transport permease C YPZ3_1522 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1523 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1524 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPZ3_1526 PF00158 Sigma-54 interaction domain YPZ3_1526 PF02954 Bacterial regulatory protein, Fis family YPZ3_1527 PF04012 PspA/IM30 family YPZ3_1528 PF04024 PspC domain YPZ3_1529 PF04317 YcjX-like family, DUF463 YPZ3_1530 PF05128 Domain of unknown function (DUF697) YPZ3_1533 PF00158 Sigma-54 interaction domain YPZ3_1533 PF18024 Helix-turn-helix domain YPZ3_1534 PF01797 Transposase IS200 like YPZ3_1535 PF08534 Redoxin YPZ3_1536 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPZ3_1536 PF13378 Enolase C-terminal domain-like YPZ3_1537 PF00246 Zinc carboxypeptidase YPZ3_1538 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPZ3_1539 PF01544 CorA-like Mg2+ transporter protein YPZ3_1541 PF07859 alpha/beta hydrolase fold YPZ3_1541 PF13472 GDSL-like Lipase/Acylhydrolase family YPZ3_1542 PF01171 PP-loop family YPZ3_1543 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPZ3_1543 PF10371 Domain of unknown function YPZ3_1543 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YPZ3_1543 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YPZ3_1543 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YPZ3_1544 PF00893 Small Multidrug Resistance protein YPZ3_1545 PF02308 MgtC family YPZ3_1546 PF03891 Domain of unknown function (DUF333) YPZ3_1547 PF03724 META domain YPZ3_1548 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_1548 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPZ3_1549 PF11739 Dicarboxylate transport YPZ3_1550 PF07027 Protein of unknown function (DUF1318) YPZ3_1551 PF08125 Mannitol dehydrogenase C-terminal domain YPZ3_1551 PF01232 Mannitol dehydrogenase Rossmann domain YPZ3_1552 PF04198 Putative sugar-binding domain YPZ3_1552 PF00325 Bacterial regulatory proteins, crp family YPZ3_1553 PF02525 Flavodoxin-like fold YPZ3_1554 PF00271 Helicase conserved C-terminal domain YPZ3_1554 PF00270 DEAD/DEAH box helicase YPZ3_1554 PF11898 Domain of unknown function (DUF3418) YPZ3_1554 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YPZ3_1554 PF04408 Helicase associated domain (HA2) YPZ3_1556 PF00089 Trypsin YPZ3_1557 PF01292 Prokaryotic cytochrome b561 YPZ3_1558 PF04264 YceI-like domain YPZ3_1560 PF14431 YwqJ-like deaminase YPZ3_1560 PF18807 Tripartite Tc toxins repeat YPZ3_1562 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YPZ3_1563 PF00672 HAMP domain YPZ3_1563 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_1563 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_1564 PF00072 Response regulator receiver domain YPZ3_1564 PF00486 Transcriptional regulatory protein, C terminal YPZ3_1566 PF13520 Amino acid permease YPZ3_1567 PF07338 Protein of unknown function (DUF1471) YPZ3_1568 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YPZ3_1568 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YPZ3_1568 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YPZ3_1569 PF02233 NAD(P) transhydrogenase beta subunit YPZ3_1570 PF00582 Universal stress protein family YPZ3_1571 PF13545 Crp-like helix-turn-helix domain YPZ3_1571 PF00027 Cyclic nucleotide-binding domain YPZ3_1572 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPZ3_1572 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPZ3_1573 PF00245 Alkaline phosphatase YPZ3_1576 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_1577 PF01842 ACT domain YPZ3_1578 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPZ3_1578 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPZ3_1578 PF00205 Thiamine pyrophosphate enzyme, central domain YPZ3_1584 PF01048 Phosphorylase superfamily YPZ3_1584 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YPZ3_1585 PF13407 Periplasmic binding protein domain YPZ3_1587 PF00356 Bacterial regulatory proteins, lacI family YPZ3_1588 PF00654 Voltage gated chloride channel YPZ3_1590 PF00480 ROK family YPZ3_1591 PF03466 LysR substrate binding domain YPZ3_1591 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_1592 PF07690 Major Facilitator Superfamily YPZ3_1593 PF05472 DNA replication terminus site-binding protein (Ter protein) YPZ3_1594 PF00206 Lyase YPZ3_1594 PF10415 Fumarase C C-terminus YPZ3_1595 PF01238 Phosphomannose isomerase type I YPZ3_1596 PF06097 Bacterial protein of unknown function (DUF945) YPZ3_1598 PF13593 SBF-like CPA transporter family (DUF4137) YPZ3_1599 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPZ3_1599 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPZ3_1600 PF12833 Helix-turn-helix domain YPZ3_1600 PF02311 AraC-like ligand binding domain YPZ3_1601 PF02653 Branched-chain amino acid transport system / permease component YPZ3_1602 PF00005 ABC transporter YPZ3_1603 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPZ3_1604 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPZ3_1605 PF02610 L-arabinose isomerase YPZ3_1605 PF11762 L-arabinose isomerase C-terminal domain YPZ3_1606 PF00005 ABC transporter YPZ3_1606 PF00664 ABC transporter transmembrane region YPZ3_1606 PF03412 Peptidase C39 family YPZ3_1608 PF13533 Biotin-lipoyl like YPZ3_1609 PF00005 ABC transporter YPZ3_1609 PF00664 ABC transporter transmembrane region YPZ3_1609 PF03412 Peptidase C39 family YPZ3_1610 PF10754 Protein of unknown function (DUF2569) YPZ3_1611 PF02508 Rnf-Nqr subunit, membrane protein YPZ3_1612 PF04060 Putative Fe-S cluster YPZ3_1613 PF10531 SLBB domain YPZ3_1613 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPZ3_1613 PF13237 4Fe-4S dicluster domain YPZ3_1613 PF13375 RnfC Barrel sandwich hybrid domain YPZ3_1614 PF12833 Helix-turn-helix domain YPZ3_1614 PF06445 GyrI-like small molecule binding domain YPZ3_1615 PF03116 NQR2, RnfD, RnfE family YPZ3_1616 PF04205 FMN-binding domain YPZ3_1617 PF02508 Rnf-Nqr subunit, membrane protein YPZ3_1618 PF00730 HhH-GPD superfamily base excision DNA repair protein YPZ3_1618 PF10576 Iron-sulfur binding domain of endonuclease III YPZ3_1618 PF00633 Helix-hairpin-helix motif YPZ3_1619 PF01370 NAD dependent epimerase/dehydratase family YPZ3_1620 PF07690 Major Facilitator Superfamily YPZ3_1621 PF00773 RNB domain YPZ3_1621 PF17876 Cold shock domain YPZ3_1621 PF08206 Ribonuclease B OB domain YPZ3_1621 PF00575 S1 RNA binding domain YPZ3_1622 PF13722 5TM C-terminal transporter carbon starvation CstA YPZ3_1622 PF02554 Carbon starvation protein CstA YPZ3_1623 PF04328 Selenoprotein, putative YPZ3_1624 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPZ3_1625 PF00596 Class II Aldolase and Adducin N-terminal domain YPZ3_1626 PF01253 Translation initiation factor SUI1 YPZ3_1627 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YPZ3_1628 PF18073 Rubredoxin metal binding domain YPZ3_1629 PF06305 Lipopolysaccharide assembly protein A domain YPZ3_1630 PF01569 PAP2 superfamily YPZ3_1631 PF00925 GTP cyclohydrolase II YPZ3_1632 PF00694 Aconitase C-terminal domain YPZ3_1632 PF00330 Aconitase family (aconitate hydratase) YPZ3_1634 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_1634 PF03466 LysR substrate binding domain YPZ3_1635 PF08272 Topoisomerase I zinc-ribbon-like YPZ3_1635 PF01131 DNA topoisomerase YPZ3_1635 PF01396 Topoisomerase DNA binding C4 zinc finger YPZ3_1635 PF01751 Toprim domain YPZ3_1636 PF08496 Peptidase family S49 N-terminal YPZ3_1636 PF01343 Peptidase family S49 YPZ3_1637 PF00106 short chain dehydrogenase YPZ3_1638 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YPZ3_1639 PF00849 RNA pseudouridylate synthase YPZ3_1639 PF01479 S4 domain YPZ3_1640 PF01300 Telomere recombination YPZ3_1641 PF02811 PHP domain YPZ3_1642 PF00425 chorismate binding enzyme YPZ3_1642 PF04715 Anthranilate synthase component I, N terminal region YPZ3_1643 PF00117 Glutamine amidotransferase class-I YPZ3_1644 PF02885 Glycosyl transferase family, helical bundle domain YPZ3_1644 PF00591 Glycosyl transferase family, a/b domain YPZ3_1645 PF00218 Indole-3-glycerol phosphate synthase YPZ3_1645 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YPZ3_1646 PF00291 Pyridoxal-phosphate dependent enzyme YPZ3_1647 PF00290 Tryptophan synthase alpha chain YPZ3_1649 PF03922 OmpW family YPZ3_1653 PF04279 Intracellular septation protein A YPZ3_1654 PF03061 Thioesterase superfamily YPZ3_1655 PF00872 Transposase, Mutator family YPZ3_1656 PF03544 Gram-negative bacterial TonB protein C-terminal YPZ3_1657 PF13505 Outer membrane protein beta-barrel domain YPZ3_1658 PF13091 PLD-like domain YPZ3_1658 PF13396 Phospholipase_D-nuclease N-terminal YPZ3_1659 PF04269 Protein of unknown function, DUF440 YPZ3_1660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPZ3_1660 PF00005 ABC transporter YPZ3_1661 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPZ3_1661 PF00005 ABC transporter YPZ3_1662 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1662 PF12911 N-terminal TM domain of oligopeptide transport permease C YPZ3_1663 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1664 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPZ3_1665 PF01914 MarC family integral membrane protein YPZ3_1666 PF00171 Aldehyde dehydrogenase family YPZ3_1666 PF00465 Iron-containing alcohol dehydrogenase YPZ3_1667 PF02796 Helix-turn-helix domain of resolvase YPZ3_1667 PF00665 Integrase core domain YPZ3_1668 PF01695 IstB-like ATP binding protein YPZ3_1669 PF00265 Thymidine kinase YPZ3_1670 PF00816 H-NS histone family YPZ3_1671 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPZ3_1671 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPZ3_1671 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPZ3_1672 PF00072 Response regulator receiver domain YPZ3_1673 PF02810 SEC-C motif YPZ3_1674 PF00551 Formyl transferase YPZ3_1674 PF01842 ACT domain YPZ3_1675 PF00872 Transposase, Mutator family YPZ3_1676 PF03466 LysR substrate binding domain YPZ3_1676 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_1677 PF03372 Endonuclease/Exonuclease/phosphatase family YPZ3_1678 PF00293 NUDIX domain YPZ3_1679 PF01131 DNA topoisomerase YPZ3_1679 PF01751 Toprim domain YPZ3_1680 PF00586 AIR synthase related protein, N-terminal domain YPZ3_1680 PF02769 AIR synthase related protein, C-terminal domain YPZ3_1681 PF00881 Nitroreductase family YPZ3_1682 PF01343 Peptidase family S49 YPZ3_1683 PF17763 Glutaminase/Asparaginase C-terminal domain YPZ3_1683 PF00710 Asparaginase, N-terminal YPZ3_1684 PF00857 Isochorismatase family YPZ3_1685 PF07023 Protein of unknown function (DUF1315) YPZ3_1686 PF01641 SelR domain YPZ3_1687 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPZ3_1687 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPZ3_1688 PF01263 Aldose 1-epimerase YPZ3_1689 PF06629 MltA-interacting protein MipA YPZ3_1690 PF06798 PrkA serine protein kinase C-terminal domain YPZ3_1690 PF08298 PrkA AAA domain YPZ3_1691 PF04285 Protein of unknown function (DUF444) YPZ3_1693 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_1693 PF03466 LysR substrate binding domain YPZ3_1694 PF05726 Pirin C-terminal cupin domain YPZ3_1694 PF02678 Pirin YPZ3_1695 PF07690 Major Facilitator Superfamily YPZ3_1696 PF01266 FAD dependent oxidoreductase YPZ3_1697 PF04293 SpoVR like protein YPZ3_1698 PF00392 Bacterial regulatory proteins, gntR family YPZ3_1698 PF07840 FadR C-terminal domain YPZ3_1699 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YPZ3_1700 PF02600 Disulfide bond formation protein DsbB YPZ3_1703 PF00266 Aminotransferase class-V YPZ3_1705 PF00872 Transposase, Mutator family YPZ3_1706 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPZ3_1730 PF00872 Transposase, Mutator family YPZ3_1739 PF05772 NinB protein YPZ3_1741 PF01695 IstB-like ATP binding protein YPZ3_1742 PF02796 Helix-turn-helix domain of resolvase YPZ3_1742 PF00665 Integrase core domain YPZ3_1743 PF12167 Arm DNA-binding domain YPZ3_1743 PF00589 Phage integrase family YPZ3_1744 PF03692 Putative zinc- or iron-chelating domain YPZ3_1745 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPZ3_1746 PF13406 Transglycosylase SLT domain YPZ3_1747 PF03775 Septum formation inhibitor MinC, C-terminal domain YPZ3_1747 PF05209 Septum formation inhibitor MinC, N-terminal domain YPZ3_1748 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YPZ3_1749 PF01612 3'-5' exonuclease YPZ3_1749 PF00570 HRDC domain YPZ3_1750 PF00501 AMP-binding enzyme YPZ3_1750 PF13193 AMP-binding enzyme C-terminal domain YPZ3_1751 PF03843 Outer membrane lipoprotein Slp family YPZ3_1752 PF00814 Glycoprotease family YPZ3_1753 PF04851 Type III restriction enzyme, res subunit YPZ3_1753 PF13307 Helicase C-terminal domain YPZ3_1754 PF01042 Endoribonuclease L-PSP YPZ3_1755 PF00893 Small Multidrug Resistance protein YPZ3_1756 PF00893 Small Multidrug Resistance protein YPZ3_1757 PF01081 KDPG and KHG aldolase YPZ3_1758 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YPZ3_1758 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YPZ3_1759 PF01380 SIS domain YPZ3_1759 PF01418 Helix-turn-helix domain, rpiR family YPZ3_1760 PF00224 Pyruvate kinase, barrel domain YPZ3_1760 PF02887 Pyruvate kinase, alpha/beta domain YPZ3_1761 PF03279 Bacterial lipid A biosynthesis acyltransferase YPZ3_1762 PF01476 LysM domain YPZ3_1762 PF01551 Peptidase family M23 YPZ3_1762 PF08525 Opacity-associated protein A N-terminal motif YPZ3_1763 PF01297 Zinc-uptake complex component A periplasmic YPZ3_1764 PF00005 ABC transporter YPZ3_1765 PF00950 ABC 3 transport family YPZ3_1766 PF05496 Holliday junction DNA helicase RuvB P-loop domain YPZ3_1766 PF05491 RuvB C-terminal winged helix domain YPZ3_1766 PF17864 RuvB AAA lid domain YPZ3_1767 PF07499 RuvA, C-terminal domain YPZ3_1767 PF01330 RuvA N terminal domain YPZ3_1768 PF02075 Crossover junction endodeoxyribonuclease RuvC YPZ3_1769 PF01709 Transcriptional regulator YPZ3_1770 PF00293 NUDIX domain YPZ3_1771 PF02938 GAD domain YPZ3_1771 PF00152 tRNA synthetases class II (D, K and N) YPZ3_1771 PF01336 OB-fold nucleic acid binding domain YPZ3_1772 PF01904 Protein of unknown function DUF72 YPZ3_1773 PF01124 MAPEG family YPZ3_1774 PF13649 Methyltransferase domain YPZ3_1775 PF08003 Protein of unknown function (DUF1698) YPZ3_1776 PF03932 CutC family YPZ3_1777 PF06185 YecM protein YPZ3_1778 PF00750 tRNA synthetases class I (R) YPZ3_1778 PF05746 DALR anticodon binding domain YPZ3_1778 PF03485 Arginyl tRNA synthetase N terminal domain YPZ3_1779 PF13332 Hemagglutinin repeat YPZ3_1779 PF05860 haemagglutination activity domain YPZ3_1780 PF08479 POTRA domain, ShlB-type YPZ3_1780 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPZ3_1780 PF17287 POTRA domain YPZ3_1781 PF03023 Lipid II flippase MurJ YPZ3_1782 PF04337 Protein of unknown function, DUF480 YPZ3_1783 PF13302 Acetyltransferase (GNAT) domain YPZ3_1784 PF07690 Major Facilitator Superfamily YPZ3_1785 PF07273 Protein of unknown function (DUF1439) YPZ3_1786 PF02613 Nitrate reductase delta subunit YPZ3_1787 PF02811 PHP domain YPZ3_1788 PF01325 Iron dependent repressor, N-terminal DNA binding domain YPZ3_1788 PF00480 ROK family YPZ3_1789 PF03009 Glycerophosphoryl diester phosphodiesterase family YPZ3_1790 PF08402 TOBE domain YPZ3_1790 PF00005 ABC transporter YPZ3_1792 PF00005 ABC transporter YPZ3_1792 PF08402 TOBE domain YPZ3_1793 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1794 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1796 PF03009 Glycerophosphoryl diester phosphodiesterase family YPZ3_1797 PF01740 STAS domain YPZ3_1797 PF00916 Sulfate permease family YPZ3_1798 PF00793 DAHP synthetase I family YPZ3_1799 PF13369 Transglutaminase-like superfamily YPZ3_1800 PF04247 Invasion gene expression up-regulator, SirB YPZ3_1801 PF13847 Methyltransferase domain YPZ3_1801 PF17827 PrmC N-terminal domain YPZ3_1802 PF03462 PCRF domain YPZ3_1802 PF00472 RF-1 domain YPZ3_1803 PF01488 Shikimate / quinate 5-dehydrogenase YPZ3_1803 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YPZ3_1803 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YPZ3_1804 PF03550 Outer membrane lipoprotein LolB YPZ3_1805 PF08544 GHMP kinases C terminal YPZ3_1805 PF00288 GHMP kinases N terminal domain YPZ3_1806 PF14572 Phosphoribosyl synthetase-associated domain YPZ3_1806 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YPZ3_1807 PF01195 Peptidyl-tRNA hydrolase YPZ3_1808 PF06071 Protein of unknown function (DUF933) YPZ3_1808 PF01926 50S ribosome-binding GTPase YPZ3_1816 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YPZ3_1817 PF00486 Transcriptional regulatory protein, C terminal YPZ3_1817 PF00072 Response regulator receiver domain YPZ3_1818 PF00672 HAMP domain YPZ3_1818 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_1818 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_1826 PF08242 Methyltransferase domain YPZ3_1830 PF00872 Transposase, Mutator family YPZ3_1839 PF01370 NAD dependent epimerase/dehydratase family YPZ3_1840 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPZ3_1840 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPZ3_1841 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPZ3_1841 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPZ3_1843 PF05962 HutD YPZ3_1844 PF01979 Amidohydrolase family YPZ3_1845 PF00392 Bacterial regulatory proteins, gntR family YPZ3_1845 PF07702 UTRA domain YPZ3_1846 PF01979 Amidohydrolase family YPZ3_1848 PF01695 IstB-like ATP binding protein YPZ3_1849 PF02796 Helix-turn-helix domain of resolvase YPZ3_1849 PF00665 Integrase core domain YPZ3_1850 PF08402 TOBE domain YPZ3_1850 PF00005 ABC transporter YPZ3_1851 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1852 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1854 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPZ3_1854 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPZ3_1858 PF00872 Transposase, Mutator family YPZ3_1859 PF00872 Transposase, Mutator family YPZ3_1864 PF05638 Type VI secretion system effector, Hcp YPZ3_1865 PF01066 CDP-alcohol phosphatidyltransferase YPZ3_1866 PF08459 UvrC Helix-hairpin-helix N-terminal YPZ3_1866 PF02151 UvrB/uvrC motif YPZ3_1866 PF01541 GIY-YIG catalytic domain YPZ3_1867 PF00072 Response regulator receiver domain YPZ3_1867 PF00196 Bacterial regulatory proteins, luxR family YPZ3_1868 PF06942 GlpM protein YPZ3_1869 PF13505 Outer membrane protein beta-barrel domain YPZ3_1870 PF00324 Amino acid permease YPZ3_1871 PF01344 Kelch motif YPZ3_1872 PF03358 NADPH-dependent FMN reductase YPZ3_1873 PF04261 Dyp-type peroxidase family YPZ3_1874 PF13473 Cupredoxin-like domain YPZ3_1874 PF09375 Imelysin YPZ3_1875 PF03239 Iron permease FTR1 family YPZ3_1876 PF00474 Sodium:solute symporter family YPZ3_1877 PF00171 Aldehyde dehydrogenase family YPZ3_1877 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPZ3_1877 PF14850 DNA-binding domain of Proline dehydrogenase YPZ3_1877 PF01619 Proline dehydrogenase YPZ3_1882 PF00291 Pyridoxal-phosphate dependent enzyme YPZ3_1883 PF02899 Phage integrase, N-terminal SAM-like domain YPZ3_1884 PF04542 Sigma-70 region 2 YPZ3_1884 PF04539 Sigma-70 region 3 YPZ3_1884 PF04545 Sigma-70, region 4 YPZ3_1885 PF00669 Bacterial flagellin N-terminal helical region YPZ3_1885 PF08884 Flagellin D3 domain YPZ3_1885 PF00700 Bacterial flagellin C-terminal helical region YPZ3_1886 PF07195 Flagellar hook-associated protein 2 C-terminus YPZ3_1886 PF07196 Flagellin hook IN motif YPZ3_1886 PF02465 Flagellar hook-associated protein 2 N-terminus YPZ3_1887 PF02561 Flagellar protein FliS YPZ3_1888 PF12833 Helix-turn-helix domain YPZ3_1889 PF00672 HAMP domain YPZ3_1889 PF00211 Adenylate and Guanylate cyclase catalytic domain YPZ3_1889 PF02743 Cache domain YPZ3_1890 PF01966 HD domain YPZ3_1891 PF00730 HhH-GPD superfamily base excision DNA repair protein YPZ3_1892 PF02049 Flagellar hook-basal body complex protein FliE YPZ3_1893 PF08345 Flagellar M-ring protein C-terminal YPZ3_1893 PF01514 Secretory protein of YscJ/FliF family YPZ3_1894 PF01706 FliG C-terminal domain YPZ3_1894 PF14842 FliG N-terminal domain YPZ3_1894 PF14841 FliG middle domain YPZ3_1895 PF02108 Flagellar assembly protein FliH YPZ3_1896 PF18269 T3SS EscN ATPase C-terminal domain YPZ3_1896 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPZ3_1897 PF02050 Flagellar FliJ protein YPZ3_1898 PF02120 Flagellar hook-length control protein FliK YPZ3_1899 PF03748 Flagellar basal body-associated protein FliL YPZ3_1900 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPZ3_1900 PF02154 Flagellar motor switch protein FliM YPZ3_1901 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPZ3_1901 PF16973 Flagellar motor switch protein FliN N-terminal YPZ3_1902 PF04347 Flagellar biosynthesis protein, FliO YPZ3_1903 PF00813 FliP family YPZ3_1904 PF01311 Bacterial export proteins, family 1 YPZ3_1906 PF00294 pfkB family carbohydrate kinase YPZ3_1907 PF02653 Branched-chain amino acid transport system / permease component YPZ3_1908 PF00005 ABC transporter YPZ3_1909 PF13407 Periplasmic binding protein domain YPZ3_1910 PF02653 Branched-chain amino acid transport system / permease component YPZ3_1911 PF00596 Class II Aldolase and Adducin N-terminal domain YPZ3_1912 PF04198 Putative sugar-binding domain YPZ3_1913 PF00669 Bacterial flagellin N-terminal helical region YPZ3_1914 PF00460 Flagella basal body rod protein YPZ3_1914 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_1915 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YPZ3_1915 PF10135 Rod binding protein YPZ3_1916 PF02119 Flagellar P-ring protein YPZ3_1917 PF02107 Flagellar L-ring protein YPZ3_1918 PF00460 Flagella basal body rod protein YPZ3_1918 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_1919 PF00460 Flagella basal body rod protein YPZ3_1919 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_1920 PF07559 Flagellar basal body protein FlaE YPZ3_1920 PF00460 Flagella basal body rod protein YPZ3_1920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_1921 PF03963 Flagellar hook capping protein - N-terminal region YPZ3_1921 PF13861 FlgD Tudor-like domain YPZ3_1921 PF13860 FlgD Ig-like domain YPZ3_1922 PF00460 Flagella basal body rod protein YPZ3_1922 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_1923 PF00460 Flagella basal body rod protein YPZ3_1924 PF17656 FlgA N-terminal domain YPZ3_1924 PF13144 Chaperone for flagella basal body P-ring formation YPZ3_1925 PF04316 Anti-sigma-28 factor, FlgM YPZ3_1926 PF05130 FlgN protein YPZ3_1927 PF09134 Invasin, domain 3 YPZ3_1927 PF07979 Intimin C-type lectin domain YPZ3_1927 PF02369 Bacterial Ig-like domain (group 1) YPZ3_1927 PF11924 Inverse autotransporter, beta-domain YPZ3_1929 PF06366 Flagellar protein FlhE YPZ3_1930 PF00771 FHIPEP family YPZ3_1931 PF01312 FlhB HrpN YscU SpaS Family YPZ3_1934 PF10709 Protein of unknown function (DUF2511) YPZ3_1936 PF04234 CopC domain YPZ3_1937 PF00210 Ferritin-like domain YPZ3_1938 PF00561 alpha/beta hydrolase fold YPZ3_1939 PF00326 Prolyl oligopeptidase family YPZ3_1939 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YPZ3_1940 PF13995 YebF-like protein YPZ3_1942 PF07130 YebG protein YPZ3_1943 PF03880 DbpA RNA binding domain YPZ3_1943 PF00270 DEAD/DEAH box helicase YPZ3_1943 PF00271 Helicase conserved C-terminal domain YPZ3_1944 PF02222 ATP-grasp domain YPZ3_1945 PF00425 chorismate binding enzyme YPZ3_1945 PF04715 Anthranilate synthase component I, N terminal region YPZ3_1946 PF00293 NUDIX domain YPZ3_1947 PF03315 Serine dehydratase beta chain YPZ3_1947 PF03313 Serine dehydratase alpha chain YPZ3_1948 PF01613 Flavin reductase like domain YPZ3_1949 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YPZ3_1949 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YPZ3_1950 PF07690 Major Facilitator Superfamily YPZ3_1951 PF03328 HpcH/HpaI aldolase/citrate lyase family YPZ3_1952 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPZ3_1953 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YPZ3_1954 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPZ3_1955 PF00171 Aldehyde dehydrogenase family YPZ3_1956 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPZ3_1957 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPZ3_1958 PF01047 MarR family YPZ3_1959 PF03471 Transporter associated domain YPZ3_1959 PF03741 Integral membrane protein TerC family YPZ3_1960 PF03610 PTS system fructose IIA component YPZ3_1960 PF03830 PTS system sorbose subfamily IIB component YPZ3_1961 PF03609 PTS system sorbose-specific iic component YPZ3_1962 PF03613 PTS system mannose/fructose/sorbose family IID component YPZ3_1963 PF06173 Protein of unknown function (DUF986) YPZ3_1964 PF02659 Putative manganese efflux pump YPZ3_1965 PF07715 TonB-dependent Receptor Plug Domain YPZ3_1965 PF00593 TonB dependent receptor YPZ3_1966 PF05231 MASE1 YPZ3_1966 PF00990 Diguanylate cyclase, GGDEF domain YPZ3_1966 PF13426 PAS domain YPZ3_1966 PF00563 EAL domain YPZ3_1966 PF08447 PAS fold YPZ3_1966 PF08448 PAS fold YPZ3_1967 PF13847 Methyltransferase domain YPZ3_1969 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YPZ3_1970 PF00324 Amino acid permease YPZ3_1971 PF12833 Helix-turn-helix domain YPZ3_1972 PF00005 ABC transporter YPZ3_1972 PF00664 ABC transporter transmembrane region YPZ3_1974 PF06167 Glucose-regulated metallo-peptidase M90 YPZ3_1975 PF01695 IstB-like ATP binding protein YPZ3_1976 PF02796 Helix-turn-helix domain of resolvase YPZ3_1976 PF00665 Integrase core domain YPZ3_1977 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPZ3_1977 PF00356 Bacterial regulatory proteins, lacI family YPZ3_1978 PF00872 Transposase, Mutator family YPZ3_1979 PF07883 Cupin domain YPZ3_1980 PF04962 KduI/IolB family YPZ3_1982 PF06917 Periplasmic pectate lyase YPZ3_1983 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1984 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_1985 PF00005 ABC transporter YPZ3_1985 PF17912 MalK OB fold domain YPZ3_1985 PF03459 TOBE domain YPZ3_1986 PF01547 Bacterial extracellular solute-binding protein YPZ3_1987 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPZ3_1988 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPZ3_1990 PF01510 N-acetylmuramoyl-L-alanine amidase YPZ3_1991 PF09339 IclR helix-turn-helix domain YPZ3_1991 PF01614 Bacterial transcriptional regulator YPZ3_1992 PF14583 Oligogalacturonate lyase YPZ3_1993 PF07690 Major Facilitator Superfamily YPZ3_1994 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_1994 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_1996 PF13954 PapC N-terminal domain YPZ3_1996 PF00577 Outer membrane usher protein YPZ3_1996 PF13953 PapC C-terminal domain YPZ3_1997 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_1997 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_1998 PF00419 Fimbrial protein YPZ3_1999 PF01435 Peptidase family M48 YPZ3_2000 PF17804 Tail specific protease N-terminal domain YPZ3_2000 PF03572 Peptidase family S41 YPZ3_2000 PF11818 C-terminal domain of tail specific protease (DUF3340) YPZ3_2000 PF00595 PDZ domain YPZ3_2001 PF17516 ProQ C-terminal domain YPZ3_2001 PF04352 ProQ/FINO family YPZ3_2002 PF13185 GAF domain YPZ3_2003 PF04403 Paraquat-inducible protein A YPZ3_2004 PF02470 MlaD protein YPZ3_2007 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_2007 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_2011 PF00665 Integrase core domain YPZ3_2011 PF02796 Helix-turn-helix domain of resolvase YPZ3_2012 PF01695 IstB-like ATP binding protein YPZ3_2014 PF00842 Alanine racemase, C-terminal domain YPZ3_2014 PF01168 Alanine racemase, N-terminal domain YPZ3_2016 PF05662 Coiled stalk of trimeric autotransporter adhesin YPZ3_2016 PF05658 Head domain of trimeric autotransporter adhesin YPZ3_2016 PF03895 YadA-like membrane anchor domain YPZ3_2016 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_2017 PF05658 Head domain of trimeric autotransporter adhesin YPZ3_2017 PF05662 Coiled stalk of trimeric autotransporter adhesin YPZ3_2017 PF03895 YadA-like membrane anchor domain YPZ3_2017 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_2018 PF01510 N-acetylmuramoyl-L-alanine amidase YPZ3_2019 PF04344 Chemotaxis phosphatase, CheZ YPZ3_2020 PF00072 Response regulator receiver domain YPZ3_2021 PF00072 Response regulator receiver domain YPZ3_2021 PF01339 CheB methylesterase YPZ3_2022 PF01739 CheR methyltransferase, SAM binding domain YPZ3_2022 PF03705 CheR methyltransferase, all-alpha domain YPZ3_2023 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_2023 PF02203 Tar ligand binding domain homologue YPZ3_2023 PF00672 HAMP domain YPZ3_2024 PF00672 HAMP domain YPZ3_2024 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_2024 PF02203 Tar ligand binding domain homologue YPZ3_2027 PF12951 Passenger-associated-transport-repeat YPZ3_2028 PF08348 YheO-like PAS domain YPZ3_2028 PF13309 HTH domain YPZ3_2030 PF01042 Endoribonuclease L-PSP YPZ3_2031 PF07690 Major Facilitator Superfamily YPZ3_2032 PF01584 CheW-like domain YPZ3_2033 PF01627 Hpt domain YPZ3_2033 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_2033 PF09078 CheY binding YPZ3_2033 PF02895 Signal transducing histidine kinase, homodimeric domain YPZ3_2033 PF01584 CheW-like domain YPZ3_2034 PF00691 OmpA family YPZ3_2034 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPZ3_2035 PF01618 MotA/TolQ/ExbB proton channel family YPZ3_2036 PF05280 Flagellar transcriptional activator (FlhC) YPZ3_2037 PF00690 Cation transporter/ATPase, N-terminus YPZ3_2037 PF00689 Cation transporting ATPase, C-terminus YPZ3_2038 PF02308 MgtC family YPZ3_2039 PF02203 Tar ligand binding domain homologue YPZ3_2039 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_2039 PF00672 HAMP domain YPZ3_2040 PF00672 HAMP domain YPZ3_2040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_2040 PF02203 Tar ligand binding domain homologue YPZ3_2041 PF02837 Glycosyl hydrolases family 2, sugar binding domain YPZ3_2041 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YPZ3_2041 PF00703 Glycosyl hydrolases family 2 YPZ3_2041 PF02929 Beta galactosidase small chain YPZ3_2041 PF16353 Domain of unknown function(DUF4981) YPZ3_2042 PF02801 Beta-ketoacyl synthase, C-terminal domain YPZ3_2042 PF00698 Acyl transferase domain YPZ3_2042 PF08659 KR domain YPZ3_2042 PF00107 Zinc-binding dehydrogenase YPZ3_2042 PF16197 Ketoacyl-synthetase C-terminal extension YPZ3_2042 PF08240 Alcohol dehydrogenase GroES-like domain YPZ3_2042 PF14765 Polyketide synthase dehydratase YPZ3_2042 PF00550 Phosphopantetheine attachment site YPZ3_2042 PF00109 Beta-ketoacyl synthase, N-terminal domain YPZ3_2043 PF10777 Inner membrane protein YlaC YPZ3_2044 PF13404 AsnC-type helix-turn-helix domain YPZ3_2044 PF01037 Lrp/AsnC ligand binding domain YPZ3_2046 PF00328 Histidine phosphatase superfamily (branch 2) YPZ3_2047 PF01638 HxlR-like helix-turn-helix YPZ3_2048 PF05368 NmrA-like family YPZ3_2049 PF08447 PAS fold YPZ3_2049 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_2050 PF00356 Bacterial regulatory proteins, lacI family YPZ3_2050 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPZ3_2051 PF00180 Isocitrate/isopropylmalate dehydrogenase YPZ3_2052 PF00849 RNA pseudouridylate synthase YPZ3_2053 PF00293 NUDIX domain YPZ3_2055 PF04356 Protein of unknown function (DUF489) YPZ3_2056 PF00206 Lyase YPZ3_2056 PF08328 Adenylosuccinate lyase C-terminal YPZ3_2058 PF00072 Response regulator receiver domain YPZ3_2058 PF00486 Transcriptional regulatory protein, C terminal YPZ3_2059 PF08918 PhoQ Sensor YPZ3_2059 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_2060 PF08007 Cupin superfamily protein YPZ3_2061 PF01546 Peptidase family M20/M25/M40 YPZ3_2061 PF07687 Peptidase dimerisation domain YPZ3_2062 PF02146 Sir2 family YPZ3_2063 PF00480 ROK family YPZ3_2064 PF12704 MacB-like periplasmic core domain YPZ3_2064 PF02687 FtsX-like permease family YPZ3_2065 PF00005 ABC transporter YPZ3_2066 PF12704 MacB-like periplasmic core domain YPZ3_2066 PF02687 FtsX-like permease family YPZ3_2067 PF17757 UvrB interaction domain YPZ3_2067 PF00270 DEAD/DEAH box helicase YPZ3_2067 PF02559 CarD-like/TRCF domain YPZ3_2067 PF00271 Helicase conserved C-terminal domain YPZ3_2067 PF03461 TRCF domain YPZ3_2068 PF05433 Glycine zipper 2TM domain YPZ3_2069 PF00872 Transposase, Mutator family YPZ3_2072 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_2073 PF05728 Uncharacterised protein family (UPF0227) YPZ3_2074 PF00933 Glycosyl hydrolase family 3 N terminal domain YPZ3_2075 PF01636 Phosphotransferase enzyme family YPZ3_2076 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPZ3_2076 PF13036 Peptidoglycan-synthase activator LpoB YPZ3_2077 PF07233 Protein of unknown function (DUF1425) YPZ3_2078 PF01230 HIT domain YPZ3_2079 PF08501 Shikimate dehydrogenase substrate binding domain YPZ3_2081 PF00367 phosphotransferase system, EIIB YPZ3_2081 PF02378 Phosphotransferase system, EIIC YPZ3_2082 PF01026 TatD related DNase YPZ3_2083 PF09115 DNA polymerase III, delta subunit, C terminal YPZ3_2084 PF02223 Thymidylate kinase YPZ3_2085 PF02618 YceG-like family YPZ3_2086 PF01063 Amino-transferase class IV YPZ3_2087 PF01797 Transposase IS200 like YPZ3_2088 PF02801 Beta-ketoacyl synthase, C-terminal domain YPZ3_2088 PF00109 Beta-ketoacyl synthase, N-terminal domain YPZ3_2090 PF00698 Acyl transferase domain YPZ3_2091 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPZ3_2091 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPZ3_2092 PF02504 Fatty acid synthesis protein YPZ3_2093 PF02620 Large ribosomal RNA subunit accumulation protein YceD YPZ3_2094 PF02545 Maf-like protein YPZ3_2096 PF01479 S4 domain YPZ3_2096 PF00849 RNA pseudouridylate synthase YPZ3_2097 PF00575 S1 RNA binding domain YPZ3_2097 PF10150 Ribonuclease E/G family YPZ3_2097 PF12111 Polyribonucleotide phosphorylase C terminal YPZ3_2098 PF00872 Transposase, Mutator family YPZ3_2099 PF01979 Amidohydrolase family YPZ3_2100 PF00872 Transposase, Mutator family YPZ3_2101 PF01266 FAD dependent oxidoreductase YPZ3_2102 PF00196 Bacterial regulatory proteins, luxR family YPZ3_2103 PF01594 AI-2E family transporter YPZ3_2106 PF00765 Autoinducer synthase YPZ3_2107 PF00196 Bacterial regulatory proteins, luxR family YPZ3_2107 PF03472 Autoinducer binding domain YPZ3_2108 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_2108 PF03466 LysR substrate binding domain YPZ3_2109 PF00083 Sugar (and other) transporter YPZ3_2111 PF00248 Aldo/keto reductase family YPZ3_2112 PF09618 CRISPR-associated protein (Cas_Csy4) YPZ3_2113 PF09615 CRISPR-associated protein (Cas_Csy3) YPZ3_2114 PF09614 CRISPR-associated protein (Cas_Csy2) YPZ3_2115 PF09611 CRISPR-associated protein (Cas_Csy1) YPZ3_2117 PF01867 CRISPR associated protein Cas1 YPZ3_2118 PF00924 Mechanosensitive ion channel YPZ3_2122 PF04041 beta-1,4-mannooligosaccharide phosphorylase YPZ3_2123 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2124 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2126 PF00356 Bacterial regulatory proteins, lacI family YPZ3_2127 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPZ3_2127 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPZ3_2127 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPZ3_2127 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPZ3_2128 PF00005 ABC transporter YPZ3_2128 PF17912 MalK OB fold domain YPZ3_2130 PF05860 haemagglutination activity domain YPZ3_2130 PF15526 Novel toxin 21 YPZ3_2130 PF05594 Haemagluttinin repeat YPZ3_2130 PF04829 Pre-toxin domain with VENN motif YPZ3_2130 PF13332 Hemagglutinin repeat YPZ3_2131 PF05860 haemagglutination activity domain YPZ3_2131 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_2131 PF13332 Hemagglutinin repeat YPZ3_2131 PF04829 Pre-toxin domain with VENN motif YPZ3_2133 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_2133 PF04829 Pre-toxin domain with VENN motif YPZ3_2133 PF13332 Hemagglutinin repeat YPZ3_2133 PF05860 haemagglutination activity domain YPZ3_2134 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPZ3_2134 PF17287 POTRA domain YPZ3_2134 PF08479 POTRA domain, ShlB-type YPZ3_2135 PF00970 Oxidoreductase FAD-binding domain YPZ3_2135 PF00111 2Fe-2S iron-sulfur cluster binding domain YPZ3_2135 PF00175 Oxidoreductase NAD-binding domain YPZ3_2136 PF00355 Rieske [2Fe-2S] domain YPZ3_2136 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YPZ3_2137 PF02028 BCCT, betaine/carnitine/choline family transporter YPZ3_2138 PF00180 Isocitrate/isopropylmalate dehydrogenase YPZ3_2139 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_2139 PF03466 LysR substrate binding domain YPZ3_2140 PF00356 Bacterial regulatory proteins, lacI family YPZ3_2141 PF02653 Branched-chain amino acid transport system / permease component YPZ3_2142 PF00005 ABC transporter YPZ3_2143 PF13407 Periplasmic binding protein domain YPZ3_2144 PF00107 Zinc-binding dehydrogenase YPZ3_2144 PF08240 Alcohol dehydrogenase GroES-like domain YPZ3_2148 PF13505 Outer membrane protein beta-barrel domain YPZ3_2149 PF00892 EamA-like transporter family YPZ3_2151 PF13649 Methyltransferase domain YPZ3_2152 PF00210 Ferritin-like domain YPZ3_2154 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_2155 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2156 PF00005 ABC transporter YPZ3_2157 PF13426 PAS domain YPZ3_2157 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_2157 PF08447 PAS fold YPZ3_2158 PF02796 Helix-turn-helix domain of resolvase YPZ3_2158 PF00665 Integrase core domain YPZ3_2159 PF01695 IstB-like ATP binding protein YPZ3_2160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_2160 PF07730 Histidine kinase YPZ3_2160 PF05231 MASE1 YPZ3_2161 PF07690 Major Facilitator Superfamily YPZ3_2162 PF04829 Pre-toxin domain with VENN motif YPZ3_2162 PF05594 Haemagluttinin repeat YPZ3_2162 PF13332 Hemagglutinin repeat YPZ3_2162 PF05860 haemagglutination activity domain YPZ3_2163 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPZ3_2163 PF17287 POTRA domain YPZ3_2163 PF08479 POTRA domain, ShlB-type YPZ3_2164 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPZ3_2165 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2166 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2166 PF12911 N-terminal TM domain of oligopeptide transport permease C YPZ3_2167 PF00005 ABC transporter YPZ3_2167 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPZ3_2168 PF00005 ABC transporter YPZ3_2168 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPZ3_2169 PF01270 Glycosyl hydrolases family 8 YPZ3_2170 PF00563 EAL domain YPZ3_2170 PF17154 Gammaproteobacterial periplasmic sensor domain YPZ3_2170 PF00990 Diguanylate cyclase, GGDEF domain YPZ3_2170 PF00672 HAMP domain YPZ3_2171 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPZ3_2172 PF06917 Periplasmic pectate lyase YPZ3_2174 PF00375 Sodium:dicarboxylate symporter family YPZ3_2175 PF00675 Insulinase (Peptidase family M16) YPZ3_2175 PF05193 Peptidase M16 inactive domain YPZ3_2176 PF00294 pfkB family carbohydrate kinase YPZ3_2177 PF00563 EAL domain YPZ3_2178 PF05170 AsmA family YPZ3_2179 PF02611 CDP-diacylglycerol pyrophosphatase YPZ3_2180 PF03631 Virulence factor BrkB YPZ3_2185 PF02595 Glycerate kinase family YPZ3_2186 PF02447 GntP family permease YPZ3_2187 PF13556 PucR C-terminal helix-turn-helix domain YPZ3_2187 PF17853 GGDEF-like domain YPZ3_2187 PF05651 Putative sugar diacid recognition YPZ3_2188 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPZ3_2188 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_2189 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YPZ3_2190 PF01432 Peptidase family M3 YPZ3_2191 PF04445 Putative SAM-dependent methyltransferase YPZ3_2192 PF08548 Peptidase M10 serralysin C terminal YPZ3_2192 PF00413 Matrixin YPZ3_2192 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YPZ3_2193 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPZ3_2193 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YPZ3_2194 PF00582 Universal stress protein family YPZ3_2195 PF10625 Universal stress protein B (UspB) YPZ3_2197 PF01384 Phosphate transporter family YPZ3_2199 PF00072 Response regulator receiver domain YPZ3_2199 PF13188 PAS domain YPZ3_2199 PF08448 PAS fold YPZ3_2199 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_2199 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_2200 PF00005 ABC transporter YPZ3_2201 PF02653 Branched-chain amino acid transport system / permease component YPZ3_2202 PF13407 Periplasmic binding protein domain YPZ3_2204 PF01116 Fructose-bisphosphate aldolase class-II YPZ3_2206 PF00072 Response regulator receiver domain YPZ3_2206 PF00486 Transcriptional regulatory protein, C terminal YPZ3_2207 PF17954 Quercetinase C-terminal cupin domain YPZ3_2207 PF02678 Pirin YPZ3_2208 PF00356 Bacterial regulatory proteins, lacI family YPZ3_2208 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPZ3_2209 PF02447 GntP family permease YPZ3_2210 PF01202 Shikimate kinase YPZ3_2212 PF01914 MarC family integral membrane protein YPZ3_2213 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPZ3_2213 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPZ3_2214 PF09134 Invasin, domain 3 YPZ3_2214 PF02369 Bacterial Ig-like domain (group 1) YPZ3_2214 PF07979 Intimin C-type lectin domain YPZ3_2214 PF11924 Inverse autotransporter, beta-domain YPZ3_2215 PF07694 5TMR of 5TMR-LYT YPZ3_2215 PF06580 Histidine kinase YPZ3_2216 PF02806 Alpha amylase, C-terminal all-beta domain YPZ3_2216 PF00128 Alpha amylase, catalytic domain YPZ3_2216 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPZ3_2217 PF00128 Alpha amylase, catalytic domain YPZ3_2217 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPZ3_2217 PF18390 Glycogen debranching enzyme C-terminal domain YPZ3_2218 PF00483 Nucleotidyl transferase YPZ3_2219 PF08323 Starch synthase catalytic domain YPZ3_2219 PF00534 Glycosyl transferases group 1 YPZ3_2220 PF00343 Carbohydrate phosphorylase YPZ3_2221 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YPZ3_2221 PF01266 FAD dependent oxidoreductase YPZ3_2223 PF13333 Integrase core domain YPZ3_2223 PF00665 Integrase core domain YPZ3_2223 PF13276 HTH-like domain YPZ3_2225 PF00665 Integrase core domain YPZ3_2225 PF02796 Helix-turn-helix domain of resolvase YPZ3_2226 PF01695 IstB-like ATP binding protein YPZ3_2227 PF05971 RNA methyltransferase YPZ3_2228 PF02885 Glycosyl transferase family, helical bundle domain YPZ3_2229 PF13193 AMP-binding enzyme C-terminal domain YPZ3_2229 PF00501 AMP-binding enzyme YPZ3_2230 PF13378 Enolase C-terminal domain-like YPZ3_2231 PF00378 Enoyl-CoA hydratase/isomerase YPZ3_2232 PF12697 Alpha/beta hydrolase family YPZ3_2233 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPZ3_2233 PF16582 Middle domain of thiamine pyrophosphate YPZ3_2233 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPZ3_2234 PF00425 chorismate binding enzyme YPZ3_2236 PF05957 Bacterial protein of unknown function (DUF883) YPZ3_2237 PF00920 Dehydratase family YPZ3_2238 PF03928 Haem-degrading YPZ3_2239 PF07690 Major Facilitator Superfamily YPZ3_2240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPZ3_2240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_2241 PF00356 Bacterial regulatory proteins, lacI family YPZ3_2243 PF00106 short chain dehydrogenase YPZ3_2244 PF01202 Shikimate kinase YPZ3_2245 PF04074 YhcH/YjgK/YiaL YPZ3_2247 PF00361 Proton-conducting membrane transporter YPZ3_2248 PF00361 Proton-conducting membrane transporter YPZ3_2249 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YPZ3_2249 PF00361 Proton-conducting membrane transporter YPZ3_2250 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YPZ3_2251 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YPZ3_2252 PF12838 4Fe-4S dicluster domain YPZ3_2253 PF00146 NADH dehydrogenase YPZ3_2254 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPZ3_2254 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_2254 PF01568 Molydopterin dinucleotide binding domain YPZ3_2254 PF00384 Molybdopterin oxidoreductase YPZ3_2255 PF10531 SLBB domain YPZ3_2255 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPZ3_2255 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPZ3_2257 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YPZ3_2257 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YPZ3_2258 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YPZ3_2259 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YPZ3_2260 PF03466 LysR substrate binding domain YPZ3_2260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_2261 PF00155 Aminotransferase class I and II YPZ3_2263 PF03600 Citrate transporter YPZ3_2263 PF02080 TrkA-C domain YPZ3_2264 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_2265 PF03887 YfbU domain YPZ3_2266 PF04217 Protein of unknown function, DUF412 YPZ3_2267 PF00871 Acetokinase family YPZ3_2268 PF07085 DRTGG domain YPZ3_2268 PF01515 Phosphate acetyl/butaryl transferase YPZ3_2269 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPZ3_2269 PF00356 Bacterial regulatory proteins, lacI family YPZ3_2270 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPZ3_2271 PF00872 Transposase, Mutator family YPZ3_2272 PF06832 Penicillin-Binding Protein C-terminus Family YPZ3_2272 PF00905 Penicillin binding protein transpeptidase domain YPZ3_2272 PF00912 Transglycosylase YPZ3_2273 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YPZ3_2273 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YPZ3_2273 PF07703 Alpha-2-macroglobulin bait region domain YPZ3_2273 PF17962 Bacterial macroglobulin domain 6 YPZ3_2273 PF01835 MG2 domain YPZ3_2273 PF00207 Alpha-2-macroglobulin family YPZ3_2273 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YPZ3_2276 PF00171 Aldehyde dehydrogenase family YPZ3_2277 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPZ3_2277 PF00205 Thiamine pyrophosphate enzyme, central domain YPZ3_2277 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPZ3_2278 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPZ3_2278 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPZ3_2279 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPZ3_2279 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPZ3_2280 PF13407 Periplasmic binding protein domain YPZ3_2281 PF00005 ABC transporter YPZ3_2282 PF02653 Branched-chain amino acid transport system / permease component YPZ3_2283 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPZ3_2283 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPZ3_2284 PF00294 pfkB family carbohydrate kinase YPZ3_2285 PF01261 Xylose isomerase-like TIM barrel YPZ3_2286 PF04962 KduI/IolB family YPZ3_2288 PF00664 ABC transporter transmembrane region YPZ3_2288 PF00005 ABC transporter YPZ3_2290 PF00196 Bacterial regulatory proteins, luxR family YPZ3_2292 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPZ3_2293 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YPZ3_2293 PF04055 Radical SAM superfamily YPZ3_2294 PF03099 Biotin/lipoate A/B protein ligase family YPZ3_2295 PF07943 Penicillin-binding protein 5, C-terminal domain YPZ3_2295 PF00768 D-alanyl-D-alanine carboxypeptidase YPZ3_2296 PF03330 Lytic transglycolase YPZ3_2296 PF05036 Sporulation related domain YPZ3_2297 PF01098 Cell cycle protein YPZ3_2298 PF00905 Penicillin binding protein transpeptidase domain YPZ3_2298 PF03717 Penicillin-binding Protein dimerisation domain YPZ3_2299 PF02590 Predicted SPOUT methyltransferase YPZ3_2301 PF01467 Cytidylyltransferase-like YPZ3_2302 PF06144 DNA polymerase III, delta subunit YPZ3_2302 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YPZ3_2303 PF04390 Lipopolysaccharide-assembly YPZ3_2304 PF00133 tRNA synthetases class I (I, L, M and V) YPZ3_2304 PF08264 Anticodon-binding domain of tRNA YPZ3_2304 PF13603 Leucyl-tRNA synthetase, Domain 2 YPZ3_2305 PF07295 Zinc-ribbon containing domain YPZ3_2306 PF00005 ABC transporter YPZ3_2307 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2308 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2309 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_2310 PF00795 Carbon-nitrogen hydrolase YPZ3_2311 PF03471 Transporter associated domain YPZ3_2311 PF00571 CBS domain YPZ3_2312 PF02130 Uncharacterized protein family UPF0054 YPZ3_2313 PF02562 PhoH-like protein YPZ3_2314 PF04055 Radical SAM superfamily YPZ3_2314 PF00919 Uncharacterized protein family UPF0004 YPZ3_2314 PF01938 TRAM domain YPZ3_2315 PF01494 FAD binding domain YPZ3_2316 PF13537 Glutamine amidotransferase domain YPZ3_2316 PF00733 Asparagine synthase YPZ3_2317 PF13344 Haloacid dehalogenase-like hydrolase YPZ3_2318 PF00480 ROK family YPZ3_2318 PF01047 MarR family YPZ3_2319 PF01979 Amidohydrolase family YPZ3_2320 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YPZ3_2321 PF02378 Phosphotransferase system, EIIC YPZ3_2321 PF00367 phosphotransferase system, EIIB YPZ3_2321 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPZ3_2322 PF01797 Transposase IS200 like YPZ3_2323 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YPZ3_2323 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPZ3_2324 PF03573 outer membrane porin, OprD family YPZ3_2325 PF03173 Putative carbohydrate binding domain YPZ3_2325 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YPZ3_2325 PF02838 Glycosyl hydrolase family 20, domain 2 YPZ3_2325 PF00728 Glycosyl hydrolase family 20, catalytic domain YPZ3_2326 PF03173 Putative carbohydrate binding domain YPZ3_2326 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YPZ3_2326 PF00728 Glycosyl hydrolase family 20, catalytic domain YPZ3_2326 PF02838 Glycosyl hydrolase family 20, domain 2 YPZ3_2327 PF01475 Ferric uptake regulator family YPZ3_2328 PF00258 Flavodoxin YPZ3_2329 PF12697 Alpha/beta hydrolase family YPZ3_2330 PF13356 Arm DNA-binding domain YPZ3_2330 PF00589 Phage integrase family YPZ3_2331 PF01695 IstB-like ATP binding protein YPZ3_2332 PF00665 Integrase core domain YPZ3_2332 PF02796 Helix-turn-helix domain of resolvase YPZ3_2334 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPZ3_2335 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2336 PF00005 ABC transporter YPZ3_2336 PF00571 CBS domain YPZ3_2337 PF00268 Ribonucleotide reductase, small chain YPZ3_2338 PF02867 Ribonucleotide reductase, barrel domain YPZ3_2338 PF08343 Ribonucleotide reductase N-terminal YPZ3_2338 PF00317 Ribonucleotide reductase, all-alpha domain YPZ3_2339 PF07972 NrdI Flavodoxin like YPZ3_2340 PF06392 Acid shock protein repeat YPZ3_2341 PF09400 Protein of unknown function (DUF2002) YPZ3_2342 PF06711 Protein of unknown function (DUF1198) YPZ3_2344 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPZ3_2345 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2346 PF12911 N-terminal TM domain of oligopeptide transport permease C YPZ3_2346 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2347 PF00005 ABC transporter YPZ3_2348 PF00005 ABC transporter YPZ3_2349 PF00547 Urease, gamma subunit YPZ3_2350 PF00699 Urease beta subunit YPZ3_2351 PF00449 Urease alpha-subunit, N-terminal domain YPZ3_2351 PF01979 Amidohydrolase family YPZ3_2352 PF05194 UreE urease accessory protein, C-terminal domain YPZ3_2352 PF02814 UreE urease accessory protein, N-terminal domain YPZ3_2353 PF01730 UreF YPZ3_2354 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPZ3_2355 PF01774 UreD urease accessory protein YPZ3_2356 PF03253 Urea transporter YPZ3_2357 PF03824 High-affinity nickel-transport protein YPZ3_2358 PF06411 HdeA/HdeB family YPZ3_2359 PF07885 Ion channel YPZ3_2359 PF02254 TrkA-N domain YPZ3_2360 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPZ3_2361 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPZ3_2362 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPZ3_2363 PF02378 Phosphotransferase system, EIIC YPZ3_2364 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YPZ3_2365 PF12833 Helix-turn-helix domain YPZ3_2365 PF07883 Cupin domain YPZ3_2366 PF04794 YdjC-like protein YPZ3_2367 PF03925 SeqA protein C-terminal domain YPZ3_2367 PF17206 SeqA protein N-terminal domain YPZ3_2368 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPZ3_2368 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPZ3_2368 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPZ3_2368 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPZ3_2370 PF00486 Transcriptional regulatory protein, C terminal YPZ3_2370 PF00072 Response regulator receiver domain YPZ3_2371 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_2371 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_2371 PF02702 Osmosensitive K+ channel His kinase sensor domain YPZ3_2371 PF13493 Domain of unknown function (DUF4118) YPZ3_2371 PF13492 GAF domain YPZ3_2372 PF02669 K+-transporting ATPase, c chain YPZ3_2374 PF03814 Potassium-transporting ATPase A subunit YPZ3_2375 PF08349 Protein of unknown function (DUF1722) YPZ3_2376 PF00875 DNA photolyase YPZ3_2376 PF03441 FAD binding domain of DNA photolyase YPZ3_2377 PF02112 cAMP phosphodiesterases class-II YPZ3_2378 PF01784 NIF3 (NGG1p interacting factor 3) YPZ3_2379 PF02682 Carboxyltransferase domain, subdomain C and D YPZ3_2380 PF02626 Carboxyltransferase domain, subdomain A and B YPZ3_2381 PF03746 LamB/YcsF family YPZ3_2384 PF01470 Pyroglutamyl peptidase YPZ3_2385 PF03167 Uracil DNA glycosylase superfamily YPZ3_2386 PF01228 Glycine radical YPZ3_2388 PF12796 Ankyrin repeats (3 copies) YPZ3_2389 PF00270 DEAD/DEAH box helicase YPZ3_2389 PF00271 Helicase conserved C-terminal domain YPZ3_2390 PF05175 Methyltransferase small domain YPZ3_2391 PF00890 FAD binding domain YPZ3_2391 PF02910 Fumarate reductase flavoprotein C-term YPZ3_2392 PF04542 Sigma-70 region 2 YPZ3_2392 PF08281 Sigma-70, region 4 YPZ3_2393 PF03872 Anti sigma-E protein RseA, N-terminal domain YPZ3_2393 PF03873 Anti sigma-E protein RseA, C-terminal domain YPZ3_2394 PF03888 MucB/RseB N-terminal domain YPZ3_2394 PF17188 MucB/RseB C-terminal domain YPZ3_2397 PF03144 Elongation factor Tu domain 2 YPZ3_2397 PF06421 GTP-binding protein LepA C-terminus YPZ3_2397 PF00009 Elongation factor Tu GTP binding domain YPZ3_2397 PF00679 Elongation factor G C-terminus YPZ3_2398 PF10502 Signal peptidase, peptidase S26 YPZ3_2399 PF14622 Ribonuclease-III-like YPZ3_2399 PF00035 Double-stranded RNA binding motif YPZ3_2400 PF07650 KH domain YPZ3_2400 PF01926 50S ribosome-binding GTPase YPZ3_2401 PF11967 Recombination protein O N terminal YPZ3_2401 PF02565 Recombination protein O C terminal YPZ3_2402 PF02796 Helix-turn-helix domain of resolvase YPZ3_2402 PF00665 Integrase core domain YPZ3_2403 PF01695 IstB-like ATP binding protein YPZ3_2404 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YPZ3_2405 PF01648 4'-phosphopantetheinyl transferase superfamily YPZ3_2406 PF01797 Transposase IS200 like YPZ3_2407 PF01380 SIS domain YPZ3_2407 PF01418 Helix-turn-helix domain, rpiR family YPZ3_2408 PF01380 SIS domain YPZ3_2410 PF14437 MafB19-like deaminase YPZ3_2411 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_2411 PF01464 Transglycosylase SLT domain YPZ3_2412 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YPZ3_2412 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YPZ3_2412 PF02769 AIR synthase related protein, C-terminal domain YPZ3_2416 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_2416 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_2417 PF13942 YfhG lipoprotein YPZ3_2418 PF00158 Sigma-54 interaction domain YPZ3_2418 PF00072 Response regulator receiver domain YPZ3_2419 PF00795 Carbon-nitrogen hydrolase YPZ3_2419 PF02540 NAD synthase YPZ3_2420 PF00543 Nitrogen regulatory protein P-II YPZ3_2421 PF14502 Helix-turn-helix domain YPZ3_2421 PF14503 YhfZ C-terminal domain YPZ3_2422 PF14502 Helix-turn-helix domain YPZ3_2422 PF14503 YhfZ C-terminal domain YPZ3_2423 PF00175 Oxidoreductase NAD-binding domain YPZ3_2423 PF00970 Oxidoreductase FAD-binding domain YPZ3_2423 PF00042 Globin YPZ3_2424 PF00464 Serine hydroxymethyltransferase YPZ3_2425 PF13505 Outer membrane protein beta-barrel domain YPZ3_2426 PF12832 MFS_1 like family YPZ3_2427 PF00874 PRD domain YPZ3_2428 PF06226 Protein of unknown function (DUF1007) YPZ3_2429 PF03824 High-affinity nickel-transport protein YPZ3_2430 PF01797 Transposase IS200 like YPZ3_2431 PF00459 Inositol monophosphatase family YPZ3_2432 PF00588 SpoU rRNA Methylase family YPZ3_2433 PF02082 Transcriptional regulator YPZ3_2434 PF00266 Aminotransferase class-V YPZ3_2435 PF01592 NifU-like N terminal domain YPZ3_2436 PF00226 DnaJ domain YPZ3_2436 PF07743 HSCB C-terminal oligomerisation domain YPZ3_2437 PF00012 Hsp70 protein YPZ3_2438 PF00111 2Fe-2S iron-sulfur cluster binding domain YPZ3_2439 PF00883 Cytosol aminopeptidase family, catalytic domain YPZ3_2439 PF12404 Peptidase YPZ3_2440 PF14581 SseB protein C-terminal domain YPZ3_2440 PF07179 SseB protein N-terminal domain YPZ3_2442 PF03797 Autotransporter beta-domain YPZ3_2442 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPZ3_2442 PF03212 Pertactin YPZ3_2443 PF03797 Autotransporter beta-domain YPZ3_2443 PF03212 Pertactin YPZ3_2443 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPZ3_2445 PF00334 Nucleoside diphosphate kinase YPZ3_2446 PF04055 Radical SAM superfamily YPZ3_2448 PF13464 Domain of unknown function (DUF4115) YPZ3_2449 PF04551 GcpE protein YPZ3_2450 PF13393 Histidyl-tRNA synthetase YPZ3_2450 PF03129 Anticodon binding domain YPZ3_2451 PF09976 Tetratricopeptide repeat-like domain YPZ3_2452 PF13360 PQQ-like domain YPZ3_2453 PF01926 50S ribosome-binding GTPase YPZ3_2453 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YPZ3_2455 PF13742 OB-fold nucleic acid binding domain YPZ3_2455 PF02601 Exonuclease VII, large subunit YPZ3_2456 PF00478 IMP dehydrogenase / GMP reductase domain YPZ3_2456 PF00571 CBS domain YPZ3_2457 PF00117 Glutamine amidotransferase class-I YPZ3_2457 PF02540 NAD synthase YPZ3_2457 PF00958 GMP synthase C terminal domain YPZ3_2458 PF01797 Transposase IS200 like YPZ3_2459 PF05638 Type VI secretion system effector, Hcp YPZ3_2463 PF00872 Transposase, Mutator family YPZ3_2465 PF08543 Phosphomethylpyrimidine kinase YPZ3_2468 PF00781 Diacylglycerol kinase catalytic domain YPZ3_2470 PF07411 Domain of unknown function (DUF1508) YPZ3_2471 PF00072 Response regulator receiver domain YPZ3_2471 PF00486 Transcriptional regulatory protein, C terminal YPZ3_2472 PF00672 HAMP domain YPZ3_2472 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_2472 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_2473 PF07690 Major Facilitator Superfamily YPZ3_2474 PF00873 AcrB/AcrD/AcrF family YPZ3_2475 PF00873 AcrB/AcrD/AcrF family YPZ3_2476 PF13533 Biotin-lipoyl like YPZ3_2477 PF08402 TOBE domain YPZ3_2477 PF00005 ABC transporter YPZ3_2478 PF00392 Bacterial regulatory proteins, gntR family YPZ3_2478 PF00155 Aminotransferase class I and II YPZ3_2479 PF00202 Aminotransferase class-III YPZ3_2481 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2482 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2483 PF00012 Hsp70 protein YPZ3_2484 PF03448 MgtE intracellular N domain YPZ3_2484 PF01769 Divalent cation transporter YPZ3_2484 PF00571 CBS domain YPZ3_2485 PF02541 Ppx/GppA phosphatase family YPZ3_2486 PF02503 Polyphosphate kinase middle domain YPZ3_2486 PF17941 Polyphosphate kinase C-terminal domain 1 YPZ3_2486 PF13090 Polyphosphate kinase C-terminal domain 2 YPZ3_2486 PF13089 Polyphosphate kinase N-terminal domain YPZ3_2487 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2488 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2489 PF00005 ABC transporter YPZ3_2492 PF13302 Acetyltransferase (GNAT) domain YPZ3_2493 PF00551 Formyl transferase YPZ3_2494 PF02769 AIR synthase related protein, C-terminal domain YPZ3_2494 PF00586 AIR synthase related protein, N-terminal domain YPZ3_2496 PF01797 Transposase IS200 like YPZ3_2497 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPZ3_2497 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPZ3_2499 PF01066 CDP-alcohol phosphatidyltransferase YPZ3_2501 PF01553 Acyltransferase YPZ3_2502 PF12147 Putative methyltransferase YPZ3_2502 PF12146 Serine aminopeptidase, S33 YPZ3_2503 PF00782 Dual specificity phosphatase, catalytic domain YPZ3_2506 PF01695 IstB-like ATP binding protein YPZ3_2507 PF00665 Integrase core domain YPZ3_2507 PF02796 Helix-turn-helix domain of resolvase YPZ3_2508 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_2508 PF03466 LysR substrate binding domain YPZ3_2509 PF00248 Aldo/keto reductase family YPZ3_2510 PF00248 Aldo/keto reductase family YPZ3_2515 PF00872 Transposase, Mutator family YPZ3_2516 PF08007 Cupin superfamily protein YPZ3_2518 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPZ3_2518 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_2518 PF03797 Autotransporter beta-domain YPZ3_2518 PF03212 Pertactin YPZ3_2519 PF05638 Type VI secretion system effector, Hcp YPZ3_2521 PF06832 Penicillin-Binding Protein C-terminus Family YPZ3_2521 PF00905 Penicillin binding protein transpeptidase domain YPZ3_2521 PF00912 Transglycosylase YPZ3_2522 PF00872 Transposase, Mutator family YPZ3_2524 PF00293 NUDIX domain YPZ3_2525 PF12850 Calcineurin-like phosphoesterase superfamily domain YPZ3_2527 PF08338 Domain of unknown function (DUF1731) YPZ3_2527 PF01370 NAD dependent epimerase/dehydratase family YPZ3_2528 PF00005 ABC transporter YPZ3_2529 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2530 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2531 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_2532 PF02441 Flavoprotein YPZ3_2533 PF00156 Phosphoribosyl transferase domain YPZ3_2534 PF02674 Colicin V production protein YPZ3_2535 PF05036 Sporulation related domain YPZ3_2536 PF02875 Mur ligase family, glutamate ligase domain YPZ3_2536 PF08245 Mur ligase middle domain YPZ3_2537 PF17848 Acetyl-coA carboxylase zinc finger domain YPZ3_2537 PF01039 Carboxyl transferase domain YPZ3_2538 PF09335 SNARE associated Golgi protein YPZ3_2539 PF01416 tRNA pseudouridine synthase YPZ3_2540 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPZ3_2540 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPZ3_2541 PF11890 Domain of unknown function (DUF3410) YPZ3_2541 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPZ3_2541 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_2543 PF00892 EamA-like transporter family YPZ3_2545 PF00419 Fimbrial protein YPZ3_2546 PF01177 Asp/Glu/Hydantoin racemase YPZ3_2547 PF02801 Beta-ketoacyl synthase, C-terminal domain YPZ3_2547 PF00109 Beta-ketoacyl synthase, N-terminal domain YPZ3_2548 PF01266 FAD dependent oxidoreductase YPZ3_2548 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_2549 PF04315 Elongation factor P hydroxylase YPZ3_2550 PF01925 Sulfite exporter TauE/SafE YPZ3_2551 PF03411 Penicillin-insensitive murein endopeptidase YPZ3_2552 PF01264 Chorismate synthase YPZ3_2553 PF05175 Methyltransferase small domain YPZ3_2554 PF01713 Smr domain YPZ3_2555 PF00300 Histidine phosphatase superfamily (branch 1) YPZ3_2556 PF00378 Enoyl-CoA hydratase/isomerase YPZ3_2556 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPZ3_2556 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPZ3_2557 PF02803 Thiolase, C-terminal domain YPZ3_2557 PF00108 Thiolase, N-terminal domain YPZ3_2558 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPZ3_2559 PF04333 MlaA lipoprotein YPZ3_2560 PF03918 Cytochrome C biogenesis protein YPZ3_2561 PF03918 Cytochrome C biogenesis protein YPZ3_2562 PF08534 Redoxin YPZ3_2563 PF01578 Cytochrome C assembly protein YPZ3_2563 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YPZ3_2564 PF03100 CcmE YPZ3_2565 PF04995 Heme exporter protein D (CcmD) YPZ3_2566 PF01578 Cytochrome C assembly protein YPZ3_2567 PF03379 CcmB protein YPZ3_2568 PF00005 ABC transporter YPZ3_2570 PF04011 LemA family YPZ3_2572 PF03831 PhnA domain YPZ3_2572 PF08274 PhnA Zinc-Ribbon YPZ3_2577 PF04717 Type VI secretion system, phage-baseplate injector YPZ3_2580 PF01695 IstB-like ATP binding protein YPZ3_2581 PF00665 Integrase core domain YPZ3_2581 PF02796 Helix-turn-helix domain of resolvase YPZ3_2589 PF13953 PapC C-terminal domain YPZ3_2589 PF00577 Outer membrane usher protein YPZ3_2589 PF13954 PapC N-terminal domain YPZ3_2590 PF00872 Transposase, Mutator family YPZ3_2591 PF13953 PapC C-terminal domain YPZ3_2591 PF13954 PapC N-terminal domain YPZ3_2591 PF00577 Outer membrane usher protein YPZ3_2592 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_2592 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_2593 PF16970 Type-1 fimbrial protein, A YPZ3_2594 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_2594 PF07724 AAA domain (Cdc48 subfamily) YPZ3_2594 PF17871 AAA lid domain YPZ3_2594 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_2604 PF13406 Transglycosylase SLT domain YPZ3_2606 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2607 PF00005 ABC transporter YPZ3_2610 PF00384 Molybdopterin oxidoreductase YPZ3_2610 PF01568 Molydopterin dinucleotide binding domain YPZ3_2610 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_2611 PF13247 4Fe-4S dicluster domain YPZ3_2611 PF12800 4Fe-4S binding domain YPZ3_2612 PF04976 DMSO reductase anchor subunit (DmsC) YPZ3_2613 PF02613 Nitrate reductase delta subunit YPZ3_2615 PF05643 Putative bacterial lipoprotein (DUF799) YPZ3_2617 PF03783 Curli production assembly/transport component CsgG YPZ3_2619 PF01292 Prokaryotic cytochrome b561 YPZ3_2620 PF00155 Aminotransferase class I and II YPZ3_2621 PF07350 Protein of unknown function (DUF1479) YPZ3_2622 PF02685 Glucokinase YPZ3_2624 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_2624 PF03466 LysR substrate binding domain YPZ3_2625 PF00248 Aldo/keto reductase family YPZ3_2627 PF01566 Natural resistance-associated macrophage protein YPZ3_2628 PF07662 Na+ dependent nucleoside transporter C-terminus YPZ3_2628 PF07670 Nucleoside recognition YPZ3_2628 PF01773 Na+ dependent nucleoside transporter N-terminus YPZ3_2629 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPZ3_2633 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YPZ3_2633 PF01653 NAD-dependent DNA ligase adenylation domain YPZ3_2633 PF12826 Helix-hairpin-helix motif YPZ3_2633 PF03120 NAD-dependent DNA ligase OB-fold domain YPZ3_2633 PF00533 BRCA1 C Terminus (BRCT) domain YPZ3_2634 PF04354 ZipA, C-terminal FtsZ-binding domain YPZ3_2636 PF00291 Pyridoxal-phosphate dependent enzyme YPZ3_2637 PF00391 PEP-utilising enzyme, mobile domain YPZ3_2637 PF02896 PEP-utilising enzyme, TIM barrel domain YPZ3_2637 PF05524 PEP-utilising enzyme, N-terminal YPZ3_2638 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPZ3_2640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_2640 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_2640 PF00672 HAMP domain YPZ3_2640 PF16527 Two-component sensor protein CpxA, periplasmic domain YPZ3_2641 PF00486 Transcriptional regulatory protein, C terminal YPZ3_2641 PF00072 Response regulator receiver domain YPZ3_2642 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_2643 PF02687 FtsX-like permease family YPZ3_2643 PF00005 ABC transporter YPZ3_2643 PF12704 MacB-like periplasmic core domain YPZ3_2644 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_2644 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPZ3_2645 PF00474 Sodium:solute symporter family YPZ3_2646 PF05195 Aminopeptidase P, N-terminal domain YPZ3_2646 PF00557 Metallopeptidase family M24 YPZ3_2647 PF00155 Aminotransferase class I and II YPZ3_2649 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_2649 PF00672 HAMP domain YPZ3_2649 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_2650 PF00072 Response regulator receiver domain YPZ3_2650 PF00486 Transcriptional regulatory protein, C terminal YPZ3_2652 PF00291 Pyridoxal-phosphate dependent enzyme YPZ3_2653 PF00005 ABC transporter YPZ3_2654 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2655 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2657 PF07690 Major Facilitator Superfamily YPZ3_2658 PF01380 SIS domain YPZ3_2658 PF01418 Helix-turn-helix domain, rpiR family YPZ3_2659 PF04074 YhcH/YjgK/YiaL YPZ3_2660 PF00480 ROK family YPZ3_2661 PF12468 Type III secretion system leucine rich repeat protein YPZ3_2663 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YPZ3_2664 PF00701 Dihydrodipicolinate synthetase family YPZ3_2665 PF04261 Dyp-type peroxidase family YPZ3_2666 PF06572 Protein of unknown function (DUF1131) YPZ3_2667 PF04076 Bacterial OB fold (BOF) protein YPZ3_2668 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPZ3_2668 PF03797 Autotransporter beta-domain YPZ3_2668 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_2668 PF03212 Pertactin YPZ3_2670 PF00583 Acetyltransferase (GNAT) family YPZ3_2671 PF01218 Coproporphyrinogen III oxidase YPZ3_2672 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YPZ3_2673 PF01515 Phosphate acetyl/butaryl transferase YPZ3_2673 PF00390 Malic enzyme, N-terminal domain YPZ3_2673 PF03949 Malic enzyme, NAD binding domain YPZ3_2674 PF00293 NUDIX domain YPZ3_2675 PF03264 NapC/NirT cytochrome c family, N-terminal region YPZ3_2676 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YPZ3_2677 PF01568 Molydopterin dinucleotide binding domain YPZ3_2677 PF00384 Molybdopterin oxidoreductase YPZ3_2677 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_2677 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPZ3_2678 PF12800 4Fe-4S binding domain YPZ3_2678 PF13187 4Fe-4S dicluster domain YPZ3_2678 PF00037 4Fe-4S binding domain YPZ3_2679 PF00196 Bacterial regulatory proteins, luxR family YPZ3_2679 PF00072 Response regulator receiver domain YPZ3_2680 PF00873 AcrB/AcrD/AcrF family YPZ3_2682 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPZ3_2683 PF13186 Iron-sulfur cluster-binding domain YPZ3_2683 PF04055 Radical SAM superfamily YPZ3_2684 PF00884 Sulfatase YPZ3_2685 PF00005 ABC transporter YPZ3_2685 PF08402 TOBE domain YPZ3_2686 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2689 PF03960 ArsC family YPZ3_2690 PF07687 Peptidase dimerisation domain YPZ3_2690 PF01546 Peptidase family M20/M25/M40 YPZ3_2691 PF02557 D-alanyl-D-alanine carboxypeptidase YPZ3_2692 PF05127 Helicase YPZ3_2692 PF13718 GNAT acetyltransferase 2 YPZ3_2692 PF08351 Domain of unknown function (DUF1726) YPZ3_2692 PF17176 tRNA-binding domain YPZ3_2693 PF04284 Protein of unknown function (DUF441) YPZ3_2694 PF04228 Putative neutral zinc metallopeptidase YPZ3_2695 PF01259 SAICAR synthetase YPZ3_2696 PF01797 Transposase IS200 like YPZ3_2697 PF06804 NlpB/DapX lipoprotein YPZ3_2698 PF00701 Dihydrodipicolinate synthetase family YPZ3_2699 PF01842 ACT domain YPZ3_2700 PF00578 AhpC/TSA family YPZ3_2702 PF01594 AI-2E family transporter YPZ3_2703 PF01435 Peptidase family M48 YPZ3_2703 PF07720 Tetratricopeptide repeat YPZ3_2704 PF03960 ArsC family YPZ3_2705 PF00308 Bacterial dnaA protein YPZ3_2706 PF01797 Transposase IS200 like YPZ3_2707 PF09190 DALR domain YPZ3_2707 PF01406 tRNA synthetases class I (C) catalytic domain YPZ3_2708 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPZ3_2709 PF00149 Calcineurin-like phosphoesterase YPZ3_2710 PF00731 AIR carboxylase YPZ3_2711 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YPZ3_2711 PF02222 ATP-grasp domain YPZ3_2713 PF00005 ABC transporter YPZ3_2714 PF13472 GDSL-like Lipase/Acylhydrolase family YPZ3_2715 PF00106 short chain dehydrogenase YPZ3_2716 PF00085 Thioredoxin YPZ3_2717 PF01145 SPFH domain / Band 7 family YPZ3_2717 PF16200 C-terminal region of band_7 YPZ3_2718 PF01957 NfeD-like C-terminal, partner-binding YPZ3_2719 PF13411 MerR HTH family regulatory protein YPZ3_2720 PF00403 Heavy-metal-associated domain YPZ3_2721 PF01963 TraB family YPZ3_2722 PF04073 Aminoacyl-tRNA editing domain YPZ3_2723 PF00149 Calcineurin-like phosphoesterase YPZ3_2723 PF02872 5'-nucleotidase, C-terminal domain YPZ3_2724 PF02872 5'-nucleotidase, C-terminal domain YPZ3_2724 PF00149 Calcineurin-like phosphoesterase YPZ3_2725 PF07690 Major Facilitator Superfamily YPZ3_2726 PF00999 Sodium/hydrogen exchanger family YPZ3_2726 PF02254 TrkA-N domain YPZ3_2727 PF00294 pfkB family carbohydrate kinase YPZ3_2728 PF02706 Chain length determinant protein YPZ3_2729 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPZ3_2729 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPZ3_2729 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPZ3_2729 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPZ3_2730 PF00535 Glycosyl transferase family 2 YPZ3_2731 PF01050 Mannose-6-phosphate isomerase YPZ3_2731 PF00483 Nucleotidyl transferase YPZ3_2732 PF01370 NAD dependent epimerase/dehydratase family YPZ3_2733 PF16363 GDP-mannose 4,6 dehydratase YPZ3_2734 PF16363 GDP-mannose 4,6 dehydratase YPZ3_2735 PF00534 Glycosyl transferases group 1 YPZ3_2735 PF13439 Glycosyltransferase Family 4 YPZ3_2741 PF01370 NAD dependent epimerase/dehydratase family YPZ3_2742 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPZ3_2743 PF16363 GDP-mannose 4,6 dehydratase YPZ3_2744 PF00483 Nucleotidyl transferase YPZ3_2745 PF00175 Oxidoreductase NAD-binding domain YPZ3_2745 PF00111 2Fe-2S iron-sulfur cluster binding domain YPZ3_2745 PF00970 Oxidoreductase FAD-binding domain YPZ3_2746 PF00762 Ferrochelatase YPZ3_2747 PF05191 Adenylate kinase, active site lid YPZ3_2748 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_2748 PF00183 Hsp90 protein YPZ3_2749 PF02132 RecR protein YPZ3_2749 PF13662 Toprim domain YPZ3_2750 PF02575 YbaB/EbfC DNA-binding family YPZ3_2751 PF12169 DNA polymerase III subunits gamma and tau domain III YPZ3_2751 PF12170 DNA polymerase III tau subunit V interacting with alpha YPZ3_2751 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YPZ3_2752 PF00156 Phosphoribosyl transferase domain YPZ3_2754 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPZ3_2754 PF12795 Mechanosensitive ion channel porin domain YPZ3_2754 PF00924 Mechanosensitive ion channel YPZ3_2755 PF02635 DsrE/DsrF-like family YPZ3_2756 PF00440 Bacterial regulatory proteins, tetR family YPZ3_2756 PF08361 MAATS-type transcriptional repressor, C-terminal region YPZ3_2757 PF00529 HlyD membrane-fusion protein of T1SS YPZ3_2757 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_2758 PF00873 AcrB/AcrD/AcrF family YPZ3_2760 PF10757 Biofilm formation regulator YbaJ YPZ3_2761 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPZ3_2762 PF09619 Type III secretion system lipoprotein chaperone (YscW) YPZ3_2764 PF00909 Ammonium Transporter Family YPZ3_2765 PF00543 Nitrogen regulatory protein P-II YPZ3_2766 PF00005 ABC transporter YPZ3_2766 PF00664 ABC transporter transmembrane region YPZ3_2767 PF00005 ABC transporter YPZ3_2767 PF00664 ABC transporter transmembrane region YPZ3_2768 PF13404 AsnC-type helix-turn-helix domain YPZ3_2768 PF01037 Lrp/AsnC ligand binding domain YPZ3_2769 PF00291 Pyridoxal-phosphate dependent enzyme YPZ3_2771 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPZ3_2771 PF12793 Sugar transport-related sRNA regulator N-term YPZ3_2772 PF06508 Queuosine biosynthesis protein QueC YPZ3_2775 PF13145 PPIC-type PPIASE domain YPZ3_2776 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_2776 PF05362 Lon protease (S16) C-terminal proteolytic domain YPZ3_2776 PF02190 ATP-dependent protease La (LON) substrate-binding domain YPZ3_2777 PF06689 ClpX C4-type zinc finger YPZ3_2777 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_2777 PF07724 AAA domain (Cdc48 subfamily) YPZ3_2778 PF00574 Clp protease YPZ3_2779 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPZ3_2779 PF05697 Bacterial trigger factor protein (TF) YPZ3_2779 PF05698 Bacterial trigger factor protein (TF) C-terminus YPZ3_2780 PF01722 BolA-like protein YPZ3_2781 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPZ3_2781 PF03923 Uncharacterized lipoprotein YPZ3_2782 PF07690 Major Facilitator Superfamily YPZ3_2783 PF03502 Nucleoside-specific channel-forming protein, Tsx YPZ3_2784 PF06481 COX Aromatic Rich Motif YPZ3_2784 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YPZ3_2785 PF00115 Cytochrome C and Quinol oxidase polypeptide I YPZ3_2786 PF00510 Cytochrome c oxidase subunit III YPZ3_2787 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YPZ3_2788 PF01040 UbiA prenyltransferase family YPZ3_2789 PF07690 Major Facilitator Superfamily YPZ3_2790 PF04461 Protein of unknown function (DUF520) YPZ3_2791 PF08546 Ketopantoate reductase PanE/ApbA C terminal YPZ3_2791 PF02558 Ketopantoate reductase PanE/ApbA YPZ3_2792 PF01965 DJ-1/PfpI family YPZ3_2793 PF02926 THUMP domain YPZ3_2793 PF02568 Thiamine biosynthesis protein (ThiI) YPZ3_2794 PF00348 Polyprenyl synthetase YPZ3_2795 PF02780 Transketolase, C-terminal domain YPZ3_2795 PF02779 Transketolase, pyrimidine binding domain YPZ3_2795 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YPZ3_2797 PF04608 Phosphatidylglycerophosphatase A YPZ3_2798 PF02769 AIR synthase related protein, C-terminal domain YPZ3_2798 PF00586 AIR synthase related protein, N-terminal domain YPZ3_2799 PF01029 NusB family YPZ3_2800 PF00885 6,7-dimethyl-8-ribityllumazine synthase YPZ3_2801 PF01872 RibD C-terminal domain YPZ3_2801 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPZ3_2802 PF03477 ATP cone domain YPZ3_2806 PF07549 SecD/SecF GG Motif YPZ3_2806 PF02355 Protein export membrane protein YPZ3_2807 PF02355 Protein export membrane protein YPZ3_2807 PF13721 SecD export protein N-terminal TM region YPZ3_2807 PF07549 SecD/SecF GG Motif YPZ3_2808 PF02699 Preprotein translocase subunit YPZ3_2809 PF01702 Queuine tRNA-ribosyltransferase YPZ3_2810 PF02547 Queuosine biosynthesis protein YPZ3_2811 PF04336 Acyl carrier protein phosphodiesterase YPZ3_2812 PF00578 AhpC/TSA family YPZ3_2812 PF10417 C-terminal domain of 1-Cys peroxiredoxin YPZ3_2813 PF01797 Transposase IS200 like YPZ3_2816 PF02903 Alpha amylase, N-terminal ig-like domain YPZ3_2816 PF00128 Alpha amylase, catalytic domain YPZ3_2817 PF00324 Amino acid permease YPZ3_2818 PF05525 Branched-chain amino acid transport protein YPZ3_2819 PF12849 PBP superfamily domain YPZ3_2820 PF11808 Phosphate regulon sensor protein PhoR YPZ3_2820 PF00989 PAS fold YPZ3_2820 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_2820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_2821 PF00072 Response regulator receiver domain YPZ3_2821 PF00486 Transcriptional regulatory protein, C terminal YPZ3_2822 PF12320 Type 5 capsule protein repressor C-terminal domain YPZ3_2822 PF00149 Calcineurin-like phosphoesterase YPZ3_2823 PF13476 AAA domain YPZ3_2824 PF00480 ROK family YPZ3_2825 PF04381 Putative exonuclease, RdgC YPZ3_2826 PF01202 Shikimate kinase YPZ3_2828 PF08241 Methyltransferase domain YPZ3_2829 PF07317 Flagellar regulator YcgR YPZ3_2829 PF07238 PilZ domain YPZ3_2830 PF00171 Aldehyde dehydrogenase family YPZ3_2831 PF01472 PUA domain YPZ3_2831 PF00696 Amino acid kinase family YPZ3_2832 PF07417 Sigma factor-binding transcriptional regulator Crl YPZ3_2834 PF00156 Phosphoribosyl transferase domain YPZ3_2837 PF01546 Peptidase family M20/M25/M40 YPZ3_2837 PF07687 Peptidase dimerisation domain YPZ3_2838 PF11799 impB/mucB/samB family C-terminal domain YPZ3_2838 PF00817 impB/mucB/samB family YPZ3_2838 PF11798 IMS family HHH motif YPZ3_2839 PF03009 Glycerophosphoryl diester phosphodiesterase family YPZ3_2840 PF02424 ApbE family YPZ3_2841 PF00970 Oxidoreductase FAD-binding domain YPZ3_2841 PF00111 2Fe-2S iron-sulfur cluster binding domain YPZ3_2841 PF00175 Oxidoreductase NAD-binding domain YPZ3_2842 PF02508 Rnf-Nqr subunit, membrane protein YPZ3_2843 PF02508 Rnf-Nqr subunit, membrane protein YPZ3_2844 PF04205 FMN-binding domain YPZ3_2845 PF03116 NQR2, RnfD, RnfE family YPZ3_2846 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YPZ3_2846 PF11973 NQRA C-terminal domain YPZ3_2847 PF03734 L,D-transpeptidase catalytic domain YPZ3_2848 PF13230 Glutamine amidotransferases class-II YPZ3_2849 PF13580 SIS domain YPZ3_2850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPZ3_2850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPZ3_2850 PF09317 Domain of unknown function (DUF1974) YPZ3_2852 PF18254 HMW1 domain 2 YPZ3_2852 PF18071 HMW1C N-terminal YPZ3_2853 PF05860 haemagglutination activity domain YPZ3_2854 PF08479 POTRA domain, ShlB-type YPZ3_2854 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPZ3_2855 PF07687 Peptidase dimerisation domain YPZ3_2855 PF01546 Peptidase family M20/M25/M40 YPZ3_2856 PF00266 Aminotransferase class-V YPZ3_2857 PF02796 Helix-turn-helix domain of resolvase YPZ3_2857 PF00665 Integrase core domain YPZ3_2858 PF01695 IstB-like ATP binding protein YPZ3_2859 PF00266 Aminotransferase class-V YPZ3_2860 PF00005 ABC transporter YPZ3_2862 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_2863 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_2865 PF01425 Amidase YPZ3_2867 PF07690 Major Facilitator Superfamily YPZ3_2868 PF03591 AzlC protein YPZ3_2869 PF05437 Branched-chain amino acid transport protein (AzlD) YPZ3_2870 PF01047 MarR family YPZ3_2871 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_2871 PF00529 HlyD membrane-fusion protein of T1SS YPZ3_2872 PF07690 Major Facilitator Superfamily YPZ3_2873 PF00588 SpoU rRNA Methylase family YPZ3_2873 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPZ3_2874 PF00085 Thioredoxin YPZ3_2876 PF13380 CoA binding domain YPZ3_2876 PF00583 Acetyltransferase (GNAT) family YPZ3_2876 PF13607 Succinyl-CoA ligase like flavodoxin domain YPZ3_2877 PF13091 PLD-like domain YPZ3_2878 PF10043 Predicted periplasmic lipoprotein (DUF2279) YPZ3_2880 PF07724 AAA domain (Cdc48 subfamily) YPZ3_2880 PF17871 AAA lid domain YPZ3_2880 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_2880 PF02861 Clp amino terminal domain, pathogenicity island component YPZ3_2880 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_2882 PF01479 S4 domain YPZ3_2882 PF00849 RNA pseudouridylate synthase YPZ3_2883 PF13525 Outer membrane lipoprotein YPZ3_2884 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPZ3_2885 PF01797 Transposase IS200 like YPZ3_2886 PF01817 Chorismate mutase type II YPZ3_2886 PF00800 Prephenate dehydratase YPZ3_2887 PF00665 Integrase core domain YPZ3_2887 PF02796 Helix-turn-helix domain of resolvase YPZ3_2888 PF01695 IstB-like ATP binding protein YPZ3_2889 PF00800 Prephenate dehydratase YPZ3_2889 PF01817 Chorismate mutase type II YPZ3_2890 PF02153 Prephenate dehydrogenase YPZ3_2890 PF01817 Chorismate mutase type II YPZ3_2891 PF00793 DAHP synthetase I family YPZ3_2892 PF04397 LytTr DNA-binding domain YPZ3_2892 PF00072 Response regulator receiver domain YPZ3_2893 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPZ3_2894 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPZ3_2895 PF04338 Protein of unknown function, DUF481 YPZ3_2897 PF01245 Ribosomal protein L19 YPZ3_2898 PF01746 tRNA (Guanine-1)-methyltransferase YPZ3_2899 PF01782 RimM N-terminal domain YPZ3_2899 PF05239 PRC-barrel domain YPZ3_2900 PF00448 SRP54-type protein, GTPase domain YPZ3_2900 PF02978 Signal peptide binding domain YPZ3_2900 PF02881 SRP54-type protein, helical bundle domain YPZ3_2901 PF01578 Cytochrome C assembly protein YPZ3_2902 PF00571 CBS domain YPZ3_2902 PF01595 Cyclin M transmembrane N-terminal domain YPZ3_2902 PF03471 Transporter associated domain YPZ3_2904 PF02664 S-Ribosylhomocysteinase (LuxS) YPZ3_2905 PF04262 Glutamate-cysteine ligase YPZ3_2906 PF09335 SNARE associated Golgi protein YPZ3_2907 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_2908 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPZ3_2908 PF01411 tRNA synthetases class II (A) YPZ3_2908 PF02272 DHHA1 domain YPZ3_2909 PF02631 RecX family YPZ3_2910 PF00154 recA bacterial DNA recombination protein YPZ3_2911 PF02464 Competence-damaged protein YPZ3_2912 PF07690 Major Facilitator Superfamily YPZ3_2915 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPZ3_2915 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPZ3_2916 PF02779 Transketolase, pyrimidine binding domain YPZ3_2916 PF02780 Transketolase, C-terminal domain YPZ3_2917 PF00456 Transketolase, thiamine diphosphate binding domain YPZ3_2918 PF02653 Branched-chain amino acid transport system / permease component YPZ3_2919 PF00005 ABC transporter YPZ3_2922 PF00141 Peroxidase YPZ3_2923 PF07361 Cytochrome b562 YPZ3_2924 PF02613 Nitrate reductase delta subunit YPZ3_2925 PF04976 DMSO reductase anchor subunit (DmsC) YPZ3_2926 PF12800 4Fe-4S binding domain YPZ3_2926 PF13247 4Fe-4S dicluster domain YPZ3_2927 PF00384 Molybdopterin oxidoreductase YPZ3_2927 PF01568 Molydopterin dinucleotide binding domain YPZ3_2927 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_2928 PF00596 Class II Aldolase and Adducin N-terminal domain YPZ3_2929 PF00455 DeoR C terminal sensor domain YPZ3_2929 PF08220 DeoR-like helix-turn-helix domain YPZ3_2931 PF01797 Transposase IS200 like YPZ3_2932 PF00005 ABC transporter YPZ3_2933 PF02653 Branched-chain amino acid transport system / permease component YPZ3_2934 PF02653 Branched-chain amino acid transport system / permease component YPZ3_2935 PF01261 Xylose isomerase-like TIM barrel YPZ3_2936 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPZ3_2936 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPZ3_2937 PF05681 Fumarate hydratase (Fumerase) YPZ3_2937 PF05683 Fumarase C-terminus YPZ3_2938 PF00557 Metallopeptidase family M24 YPZ3_2941 PF00593 TonB dependent receptor YPZ3_2941 PF07715 TonB-dependent Receptor Plug Domain YPZ3_2942 PF03150 Di-haem cytochrome c peroxidase YPZ3_2942 PF00034 Cytochrome c YPZ3_2942 PF14376 Haem-binding domain YPZ3_2943 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_2944 PF01022 Bacterial regulatory protein, arsR family YPZ3_2945 PF02040 Arsenical pump membrane protein YPZ3_2946 PF13936 Helix-turn-helix domain YPZ3_2946 PF04198 Putative sugar-binding domain YPZ3_2947 PF04198 Putative sugar-binding domain YPZ3_2948 PF02734 DAK2 domain YPZ3_2949 PF02733 Dak1 domain YPZ3_2951 PF08240 Alcohol dehydrogenase GroES-like domain YPZ3_2951 PF00107 Zinc-binding dehydrogenase YPZ3_2952 PF02502 Ribose/Galactose Isomerase YPZ3_2953 PF00488 MutS domain V YPZ3_2953 PF05190 MutS family domain IV YPZ3_2953 PF05192 MutS domain III YPZ3_2953 PF05188 MutS domain II YPZ3_2953 PF01624 MutS domain I YPZ3_2954 PF00140 Sigma-70 factor, region 1.2 YPZ3_2954 PF04542 Sigma-70 region 2 YPZ3_2954 PF04539 Sigma-70 region 3 YPZ3_2954 PF04545 Sigma-70, region 4 YPZ3_2955 PF01476 LysM domain YPZ3_2955 PF01551 Peptidase family M23 YPZ3_2957 PF01975 Survival protein SurE YPZ3_2958 PF01142 tRNA pseudouridine synthase D (TruD) YPZ3_2959 PF02542 YgbB family YPZ3_2960 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPZ3_2961 PF04977 Septum formation initiator YPZ3_2962 PF12084 Protein of unknown function (DUF3561) YPZ3_2964 PF00009 Elongation factor Tu GTP binding domain YPZ3_2965 PF01507 Phosphoadenosine phosphosulfate reductase family YPZ3_2966 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPZ3_2966 PF10414 Sirohaem synthase dimerisation region YPZ3_2966 PF14824 Sirohaem biosynthesis protein central YPZ3_2968 PF01507 Phosphoadenosine phosphosulfate reductase family YPZ3_2969 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPZ3_2969 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPZ3_2970 PF00258 Flavodoxin YPZ3_2970 PF00175 Oxidoreductase NAD-binding domain YPZ3_2970 PF00667 FAD binding domain YPZ3_2971 PF01242 6-pyruvoyl tetrahydropterin synthase YPZ3_2972 PF04055 Radical SAM superfamily YPZ3_2973 PF00080 Copper/zinc superoxide dismutase (SODC) YPZ3_2974 PF00113 Enolase, C-terminal TIM barrel domain YPZ3_2974 PF03952 Enolase, N-terminal domain YPZ3_2975 PF00117 Glutamine amidotransferase class-I YPZ3_2975 PF06418 CTP synthase N-terminus YPZ3_2976 PF03819 MazG nucleotide pyrophosphohydrolase domain YPZ3_2977 PF13291 ACT domain YPZ3_2977 PF02824 TGS domain YPZ3_2977 PF04607 Region found in RelA / SpoT proteins YPZ3_2978 PF00072 Response regulator receiver domain YPZ3_2978 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_2978 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPZ3_2978 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_2978 PF00672 HAMP domain YPZ3_2978 PF01627 Hpt domain YPZ3_2979 PF00595 PDZ domain YPZ3_2980 PF13286 Phosphohydrolase-associated domain YPZ3_2980 PF01966 HD domain YPZ3_2981 PF01048 Phosphorylase superfamily YPZ3_2982 PF01497 Periplasmic binding protein YPZ3_2983 PF03458 UPF0126 domain YPZ3_2984 PF01521 Iron-sulphur cluster biosynthesis YPZ3_2985 PF00654 Voltage gated chloride channel YPZ3_2986 PF00202 Aminotransferase class-III YPZ3_2987 PF01032 FecCD transport family YPZ3_2988 PF01497 Periplasmic binding protein YPZ3_2989 PF00005 ABC transporter YPZ3_2990 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YPZ3_2990 PF00912 Transglycosylase YPZ3_2990 PF14814 Bifunctional transglycosylase second domain YPZ3_2990 PF00905 Penicillin binding protein transpeptidase domain YPZ3_2991 PF08482 ATP-dependent helicase C-terminal YPZ3_2991 PF00271 Helicase conserved C-terminal domain YPZ3_2991 PF04408 Helicase associated domain (HA2) YPZ3_2991 PF00270 DEAD/DEAH box helicase YPZ3_2992 PF02834 LigT like Phosphoesterase YPZ3_2993 PF03749 Sugar fermentation stimulation protein RE domain YPZ3_2993 PF17746 SfsA N-terminal OB domain YPZ3_2994 PF01258 Prokaryotic dksA/traR C4-type zinc finger YPZ3_2995 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPZ3_2996 PF12627 Probable RNA and SrmB- binding site of polymerase A YPZ3_2996 PF12626 Polymerase A arginine-rich C-terminus YPZ3_2996 PF01743 Poly A polymerase head domain YPZ3_2997 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YPZ3_2998 PF02548 Ketopantoate hydroxymethyltransferase YPZ3_2999 PF02569 Pantoate-beta-alanine ligase YPZ3_3000 PF02261 Aspartate decarboxylase YPZ3_3001 PF01522 Polysaccharide deacetylase YPZ3_3002 PF01061 ABC-2 type transporter YPZ3_3003 PF00005 ABC transporter YPZ3_3004 PF00484 Carbonic anhydrase YPZ3_3005 PF00156 Phosphoribosyl transferase domain YPZ3_3006 PF07731 Multicopper oxidase YPZ3_3006 PF07732 Multicopper oxidase YPZ3_3006 PF00394 Multicopper oxidase YPZ3_3006 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPZ3_3007 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YPZ3_3008 PF17284 Spermidine synthase tetramerisation domain YPZ3_3009 PF02675 S-adenosylmethionine decarboxylase YPZ3_3010 PF00892 EamA-like transporter family YPZ3_3011 PF06062 Uncharacterised protein family (UPF0231) YPZ3_3012 PF00330 Aconitase family (aconitate hydratase) YPZ3_3012 PF06434 Aconitate hydratase 2 N-terminus YPZ3_3012 PF11791 Aconitate B N-terminal domain YPZ3_3013 PF01797 Transposase IS200 like YPZ3_3014 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPZ3_3014 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_3015 PF02817 e3 binding domain YPZ3_3015 PF00364 Biotin-requiring enzyme YPZ3_3015 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPZ3_3016 PF00456 Transketolase, thiamine diphosphate binding domain YPZ3_3016 PF17831 Pyruvate dehydrogenase E1 component middle domain YPZ3_3017 PF07729 FCD domain YPZ3_3017 PF00392 Bacterial regulatory proteins, gntR family YPZ3_3018 PF00324 Amino acid permease YPZ3_3019 PF17113 Regulatory signalling modulator protein AmpE YPZ3_3020 PF01510 N-acetylmuramoyl-L-alanine amidase YPZ3_3021 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YPZ3_3021 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YPZ3_3022 PF07963 Prokaryotic N-terminal methylation motif YPZ3_3023 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YPZ3_3023 PF00437 Type II/IV secretion system protein YPZ3_3024 PF00482 Type II secretion system (T2SS), protein F YPZ3_3025 PF00478 IMP dehydrogenase / GMP reductase domain YPZ3_3026 PF01121 Dephospho-CoA kinase YPZ3_3027 PF07072 Cell division protein YPZ3_3028 PF01797 Transposase IS200 like YPZ3_3029 PF02796 Helix-turn-helix domain of resolvase YPZ3_3029 PF00665 Integrase core domain YPZ3_3030 PF01695 IstB-like ATP binding protein YPZ3_3031 PF08676 MutL C terminal dimerisation domain YPZ3_3031 PF01119 DNA mismatch repair protein, C-terminal domain YPZ3_3033 PF13356 Arm DNA-binding domain YPZ3_3033 PF00589 Phage integrase family YPZ3_3034 PF03739 Lipopolysaccharide export system permease LptF/LptG YPZ3_3035 PF03739 Lipopolysaccharide export system permease LptF/LptG YPZ3_3036 PF02789 Cytosol aminopeptidase family, N-terminal domain YPZ3_3036 PF00883 Cytosol aminopeptidase family, catalytic domain YPZ3_3037 PF04364 DNA polymerase III chi subunit, HolC YPZ3_3038 PF00133 tRNA synthetases class I (I, L, M and V) YPZ3_3038 PF10458 Valyl tRNA synthetase tRNA binding arm YPZ3_3038 PF08264 Anticodon-binding domain of tRNA YPZ3_3039 PF00583 Acetyltransferase (GNAT) family YPZ3_3040 PF06877 Regulator of ribonuclease activity B YPZ3_3041 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPZ3_3041 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPZ3_3042 PF04074 YhcH/YjgK/YiaL YPZ3_3045 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_3046 PF12911 N-terminal TM domain of oligopeptide transport permease C YPZ3_3046 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_3047 PF00005 ABC transporter YPZ3_3047 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPZ3_3048 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPZ3_3048 PF00005 ABC transporter YPZ3_3049 PF13597 Anaerobic ribonucleoside-triphosphate reductase YPZ3_3049 PF03477 ATP cone domain YPZ3_3051 PF07702 UTRA domain YPZ3_3051 PF00392 Bacterial regulatory proteins, gntR family YPZ3_3052 PF06754 Phosphonate metabolism protein PhnG YPZ3_3053 PF05845 Bacterial phosphonate metabolism protein (PhnH) YPZ3_3054 PF05861 Bacterial phosphonate metabolism protein (PhnI) YPZ3_3055 PF06007 Phosphonate metabolism protein PhnJ YPZ3_3056 PF00005 ABC transporter YPZ3_3057 PF00005 ABC transporter YPZ3_3058 PF07969 Amidohydrolase family YPZ3_3060 PF12706 Beta-lactamase superfamily domain YPZ3_3061 PF13460 NAD(P)H-binding YPZ3_3064 PF17912 MalK OB fold domain YPZ3_3064 PF03459 TOBE domain YPZ3_3064 PF00005 ABC transporter YPZ3_3065 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_3067 PF13416 Bacterial extracellular solute-binding protein YPZ3_3070 PF13508 Acetyltransferase (GNAT) domain YPZ3_3074 PF02321 Outer membrane efflux protein YPZ3_3074 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPZ3_3075 PF00873 AcrB/AcrD/AcrF family YPZ3_3076 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_3076 PF00529 HlyD membrane-fusion protein of T1SS YPZ3_3077 PF00296 Luciferase-like monooxygenase YPZ3_3078 PF01381 Helix-turn-helix YPZ3_3079 PF00270 DEAD/DEAH box helicase YPZ3_3079 PF12343 Cold shock protein DEAD box A YPZ3_3079 PF03880 DbpA RNA binding domain YPZ3_3079 PF00271 Helicase conserved C-terminal domain YPZ3_3080 PF07719 Tetratricopeptide repeat YPZ3_3080 PF13181 Tetratricopeptide repeat YPZ3_3081 PF00013 KH domain YPZ3_3081 PF01138 3' exoribonuclease family, domain 1 YPZ3_3081 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YPZ3_3081 PF03725 3' exoribonuclease family, domain 2 YPZ3_3081 PF00575 S1 RNA binding domain YPZ3_3082 PF13276 HTH-like domain YPZ3_3082 PF13333 Integrase core domain YPZ3_3082 PF00665 Integrase core domain YPZ3_3090 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_3090 PF07724 AAA domain (Cdc48 subfamily) YPZ3_3090 PF17871 AAA lid domain YPZ3_3090 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_3097 PF04717 Type VI secretion system, phage-baseplate injector YPZ3_3100 PF14220 Domain of unknown function (DUF4329) YPZ3_3100 PF03527 RHS protein YPZ3_3100 PF05593 RHS Repeat YPZ3_3103 PF04717 Type VI secretion system, phage-baseplate injector YPZ3_3105 PF05593 RHS Repeat YPZ3_3105 PF03527 RHS protein YPZ3_3108 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPZ3_3108 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPZ3_3109 PF02311 AraC-like ligand binding domain YPZ3_3109 PF12833 Helix-turn-helix domain YPZ3_3110 PF05025 RbsD / FucU transport protein family YPZ3_3111 PF00294 pfkB family carbohydrate kinase YPZ3_3113 PF03358 NADPH-dependent FMN reductase YPZ3_3114 PF09084 NMT1/THI5 like YPZ3_3115 PF00296 Luciferase-like monooxygenase YPZ3_3116 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_3117 PF00005 ABC transporter YPZ3_3118 PF00860 Permease family YPZ3_3119 PF00999 Sodium/hydrogen exchanger family YPZ3_3121 PF03279 Bacterial lipid A biosynthesis acyltransferase YPZ3_3123 PF00005 ABC transporter YPZ3_3124 PF02653 Branched-chain amino acid transport system / permease component YPZ3_3126 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPZ3_3126 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPZ3_3127 PF00571 CBS domain YPZ3_3127 PF01380 SIS domain YPZ3_3128 PF02798 Glutathione S-transferase, N-terminal domain YPZ3_3132 PF05433 Glycine zipper 2TM domain YPZ3_3133 PF00753 Metallo-beta-lactamase superfamily YPZ3_3134 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YPZ3_3134 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPZ3_3135 PF02627 Carboxymuconolactone decarboxylase family YPZ3_3136 PF07690 Major Facilitator Superfamily YPZ3_3139 PF01207 Dihydrouridine synthase (Dus) YPZ3_3141 PF00474 Sodium:solute symporter family YPZ3_3142 PF02785 Biotin carboxylase C-terminal domain YPZ3_3142 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPZ3_3142 PF00289 Biotin carboxylase, N-terminal domain YPZ3_3143 PF00364 Biotin-requiring enzyme YPZ3_3144 PF01220 Dehydroquinase class II YPZ3_3145 PF01794 Ferric reductase like transmembrane component YPZ3_3146 PF00174 Oxidoreductase molybdopterin binding domain YPZ3_3147 PF00107 Zinc-binding dehydrogenase YPZ3_3147 PF08240 Alcohol dehydrogenase GroES-like domain YPZ3_3148 PF00990 Diguanylate cyclase, GGDEF domain YPZ3_3148 PF17157 Gammaproteobacterial periplasmic sensor domain YPZ3_3148 PF00563 EAL domain YPZ3_3150 PF04085 rod shape-determining protein MreC YPZ3_3151 PF04093 rod shape-determining protein MreD YPZ3_3152 PF02545 Maf-like protein YPZ3_3153 PF00575 S1 RNA binding domain YPZ3_3153 PF10150 Ribonuclease E/G family YPZ3_3154 PF13502 AsmA-like C-terminal region YPZ3_3154 PF13116 Protein of unknown function YPZ3_3155 PF00795 Carbon-nitrogen hydrolase YPZ3_3156 PF01523 Putative modulator of DNA gyrase YPZ3_3157 PF14431 YwqJ-like deaminase YPZ3_3157 PF18807 Tripartite Tc toxins repeat YPZ3_3158 PF05785 Rho-activating domain of cytotoxic necrotizing factor YPZ3_3158 PF18807 Tripartite Tc toxins repeat YPZ3_3162 PF12255 Insecticide toxin TcdB middle/C-terminal region YPZ3_3162 PF03534 Salmonella virulence plasmid 65kDa B protein YPZ3_3162 PF12256 Insecticide toxin TcdB middle/N-terminal region YPZ3_3163 PF18413 Neuraminidase-like domain YPZ3_3163 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain YPZ3_3167 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_3167 PF03466 LysR substrate binding domain YPZ3_3168 PF13533 Biotin-lipoyl like YPZ3_3169 PF04632 Fusaric acid resistance protein family YPZ3_3170 PF00171 Aldehyde dehydrogenase family YPZ3_3171 PF00171 Aldehyde dehydrogenase family YPZ3_3173 PF04751 Protein of unknown function (DUF615) YPZ3_3174 PF01523 Putative modulator of DNA gyrase YPZ3_3176 PF07361 Cytochrome b562 YPZ3_3177 PF14760 Rnk N-terminus YPZ3_3177 PF01272 Transcription elongation factor, GreA/GreB, C-term YPZ3_3178 PF11941 Domain of unknown function (DUF3459) YPZ3_3178 PF00128 Alpha amylase, catalytic domain YPZ3_3179 PF00367 phosphotransferase system, EIIB YPZ3_3179 PF02378 Phosphotransferase system, EIIC YPZ3_3180 PF00356 Bacterial regulatory proteins, lacI family YPZ3_3182 PF01042 Endoribonuclease L-PSP YPZ3_3183 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YPZ3_3183 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YPZ3_3184 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPZ3_3184 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPZ3_3185 PF03668 P-loop ATPase protein family YPZ3_3186 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPZ3_3187 PF04552 Sigma-54, DNA binding domain YPZ3_3187 PF00309 Sigma-54 factor, Activator interacting domain (AID) YPZ3_3187 PF04963 Sigma-54 factor, core binding domain YPZ3_3188 PF00005 ABC transporter YPZ3_3188 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPZ3_3189 PF03968 OstA-like protein YPZ3_3190 PF06835 Lipopolysaccharide-assembly, LptC-related YPZ3_3192 PF01380 SIS domain YPZ3_3192 PF00571 CBS domain YPZ3_3193 PF01699 Sodium/calcium exchanger protein YPZ3_3194 PF00005 ABC transporter YPZ3_3195 PF02405 Permease MlaE YPZ3_3196 PF02470 MlaD protein YPZ3_3197 PF05494 MlaC protein YPZ3_3198 PF13466 STAS domain YPZ3_3199 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPZ3_3200 PF13180 PDZ domain YPZ3_3201 PF01797 Transposase IS200 like YPZ3_3202 PF00595 PDZ domain YPZ3_3202 PF13180 PDZ domain YPZ3_3203 PF06295 Protein of unknown function (DUF1043) YPZ3_3204 PF03969 AFG1-like ATPase YPZ3_3205 PF00572 Ribosomal protein L13 YPZ3_3206 PF00380 Ribosomal protein S9/S16 YPZ3_3207 PF00043 Glutathione S-transferase, C-terminal domain YPZ3_3207 PF02798 Glutathione S-transferase, N-terminal domain YPZ3_3208 PF04386 Stringent starvation protein B YPZ3_3210 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_3210 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPZ3_3211 PF00310 Glutamine amidotransferases class-II YPZ3_3211 PF01493 GXGXG motif YPZ3_3211 PF04898 Glutamate synthase central domain YPZ3_3211 PF01645 Conserved region in glutamate synthase YPZ3_3212 PF16199 Radical_SAM C-terminal domain YPZ3_3212 PF04055 Radical SAM superfamily YPZ3_3213 PF00072 Response regulator receiver domain YPZ3_3213 PF18415 Histidine kinase receptor ArcB trans-membrane domain YPZ3_3213 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_3213 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_3213 PF00989 PAS fold YPZ3_3213 PF01627 Hpt domain YPZ3_3215 PF00912 Transglycosylase YPZ3_3216 PF04972 BON domain YPZ3_3217 PF13580 SIS domain YPZ3_3218 PF02021 Uncharacterised protein family UPF0102 YPZ3_3219 PF04348 LppC putative lipoprotein YPZ3_3220 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPZ3_3221 PF02678 Pirin YPZ3_3221 PF17954 Quercetinase C-terminal cupin domain YPZ3_3222 PF03466 LysR substrate binding domain YPZ3_3222 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_3223 PF13409 Glutathione S-transferase, N-terminal domain YPZ3_3224 PF01695 IstB-like ATP binding protein YPZ3_3225 PF00665 Integrase core domain YPZ3_3225 PF02796 Helix-turn-helix domain of resolvase YPZ3_3226 PF00326 Prolyl oligopeptidase family YPZ3_3227 PF01250 Ribosomal protein S6 YPZ3_3228 PF01281 Ribosomal protein L9, N-terminal domain YPZ3_3228 PF03948 Ribosomal protein L9, C-terminal domain YPZ3_3229 PF01797 Transposase IS200 like YPZ3_3231 PF04225 Opacity-associated protein A LysM-like domain YPZ3_3231 PF08525 Opacity-associated protein A N-terminal motif YPZ3_3232 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPZ3_3232 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPZ3_3233 PF04405 Domain of Unknown function (DUF542) YPZ3_3233 PF01814 Hemerythrin HHE cation binding domain YPZ3_3234 PF02872 5'-nucleotidase, C-terminal domain YPZ3_3234 PF00149 Calcineurin-like phosphoesterase YPZ3_3235 PF00459 Inositol monophosphatase family YPZ3_3236 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YPZ3_3237 PF03471 Transporter associated domain YPZ3_3237 PF00571 CBS domain YPZ3_3237 PF01595 Cyclin M transmembrane N-terminal domain YPZ3_3238 PF01625 Peptide methionine sulfoxide reductase YPZ3_3239 PF07244 Surface antigen variable number repeat YPZ3_3239 PF01103 Surface antigen YPZ3_3239 PF17243 POTRA domain TamA domain 1 YPZ3_3240 PF04357 TamB, inner membrane protein subunit of TAM complex YPZ3_3241 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YPZ3_3242 PF00719 Inorganic pyrophosphatase YPZ3_3243 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YPZ3_3244 PF08245 Mur ligase middle domain YPZ3_3244 PF01225 Mur ligase family, catalytic domain YPZ3_3244 PF02875 Mur ligase family, glutamate ligase domain YPZ3_3245 PF02863 Arginine repressor, C-terminal domain YPZ3_3245 PF01316 Arginine repressor, DNA binding domain YPZ3_3246 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YPZ3_3246 PF00056 lactate/malate dehydrogenase, NAD binding domain YPZ3_3248 PF00348 Polyprenyl synthetase YPZ3_3249 PF00829 Ribosomal prokaryotic L21 protein YPZ3_3250 PF00892 EamA-like transporter family YPZ3_3251 PF01926 50S ribosome-binding GTPase YPZ3_3251 PF01018 GTP1/OBG YPZ3_3252 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_3252 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_3252 PF00672 HAMP domain YPZ3_3253 PF00486 Transcriptional regulatory protein, C terminal YPZ3_3253 PF00072 Response regulator receiver domain YPZ3_3254 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YPZ3_3255 PF01272 Transcription elongation factor, GreA/GreB, C-term YPZ3_3255 PF03449 Transcription elongation factor, N-terminal YPZ3_3256 PF01728 FtsJ-like methyltransferase YPZ3_3257 PF17862 AAA+ lid domain YPZ3_3257 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_3257 PF01434 Peptidase family M41 YPZ3_3257 PF06480 FtsH Extracellular YPZ3_3258 PF00809 Pterin binding enzyme YPZ3_3259 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPZ3_3259 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPZ3_3259 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPZ3_3259 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPZ3_3260 PF02576 RimP N-terminal domain YPZ3_3260 PF17384 RimP C-terminal SH3 domain YPZ3_3261 PF08529 NusA N-terminal domain YPZ3_3261 PF13184 NusA-like KH domain YPZ3_3261 PF00575 S1 RNA binding domain YPZ3_3262 PF11987 Translation-initiation factor 2 YPZ3_3262 PF03144 Elongation factor Tu domain 2 YPZ3_3262 PF00009 Elongation factor Tu GTP binding domain YPZ3_3262 PF04760 Translation initiation factor IF-2, N-terminal region YPZ3_3262 PF08364 Bacterial translation initiation factor IF-2 associated region YPZ3_3263 PF02033 Ribosome-binding factor A YPZ3_3264 PF01509 TruB family pseudouridylate synthase (N terminal domain) YPZ3_3264 PF16198 tRNA pseudouridylate synthase B C-terminal domain YPZ3_3264 PF09157 Pseudouridine synthase II TruB, C-terminal YPZ3_3266 PF13333 Integrase core domain YPZ3_3266 PF00665 Integrase core domain YPZ3_3266 PF13276 HTH-like domain YPZ3_3270 PF05638 Type VI secretion system effector, Hcp YPZ3_3271 PF07148 Maltose operon periplasmic protein precursor (MalM) YPZ3_3272 PF02264 LamB porin YPZ3_3273 PF00005 ABC transporter YPZ3_3273 PF17912 MalK OB fold domain YPZ3_3274 PF01547 Bacterial extracellular solute-binding protein YPZ3_3275 PF14785 Maltose transport system permease protein MalF P2 domain YPZ3_3275 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_3276 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_3277 PF06146 Phosphate-starvation-inducible E YPZ3_3278 PF00342 Phosphoglucose isomerase YPZ3_3279 PF01842 ACT domain YPZ3_3279 PF00696 Amino acid kinase family YPZ3_3280 PF08479 POTRA domain, ShlB-type YPZ3_3280 PF17287 POTRA domain YPZ3_3280 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPZ3_3281 PF17287 POTRA domain YPZ3_3281 PF08479 POTRA domain, ShlB-type YPZ3_3281 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPZ3_3282 PF05860 haemagglutination activity domain YPZ3_3282 PF13332 Hemagglutinin repeat YPZ3_3283 PF02574 Homocysteine S-methyltransferase YPZ3_3283 PF00809 Pterin binding enzyme YPZ3_3283 PF02965 Vitamin B12 dependent methionine synthase, activation domain YPZ3_3283 PF02310 B12 binding domain YPZ3_3283 PF02607 B12 binding domain YPZ3_3284 PF09339 IclR helix-turn-helix domain YPZ3_3284 PF01614 Bacterial transcriptional regulator YPZ3_3285 PF01614 Bacterial transcriptional regulator YPZ3_3285 PF09339 IclR helix-turn-helix domain YPZ3_3286 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YPZ3_3287 PF00463 Isocitrate lyase family YPZ3_3288 PF01274 Malate synthase YPZ3_3289 PF04204 Homoserine O-succinyltransferase YPZ3_3290 PF02142 MGS-like domain YPZ3_3290 PF01808 AICARFT/IMPCHase bienzyme YPZ3_3291 PF02843 Phosphoribosylglycinamide synthetase, C domain YPZ3_3291 PF02844 Phosphoribosylglycinamide synthetase, N domain YPZ3_3291 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPZ3_3292 PF07356 Protein of unknown function (DUF1481) YPZ3_3293 PF04222 Protein of unknown function (DUF416) YPZ3_3294 PF04493 Endonuclease V YPZ3_3295 PF01208 Uroporphyrinogen decarboxylase (URO-D) YPZ3_3297 PF00293 NUDIX domain YPZ3_3297 PF09297 NADH pyrophosphatase zinc ribbon domain YPZ3_3298 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPZ3_3299 PF01964 Radical SAM ThiC family YPZ3_3299 PF13667 ThiC-associated domain YPZ3_3300 PF02581 Thiamine monophosphate synthase YPZ3_3301 PF00899 ThiF family YPZ3_3302 PF05690 Thiazole biosynthesis protein ThiG YPZ3_3303 PF06968 Biotin and Thiamin Synthesis associated domain YPZ3_3303 PF04055 Radical SAM superfamily YPZ3_3304 PF01797 Transposase IS200 like YPZ3_3305 PF04998 RNA polymerase Rpb1, domain 5 YPZ3_3305 PF04997 RNA polymerase Rpb1, domain 1 YPZ3_3305 PF00623 RNA polymerase Rpb1, domain 2 YPZ3_3305 PF04983 RNA polymerase Rpb1, domain 3 YPZ3_3305 PF05000 RNA polymerase Rpb1, domain 4 YPZ3_3306 PF04563 RNA polymerase beta subunit YPZ3_3306 PF04565 RNA polymerase Rpb2, domain 3 YPZ3_3306 PF10385 RNA polymerase beta subunit external 1 domain YPZ3_3306 PF00562 RNA polymerase Rpb2, domain 6 YPZ3_3306 PF04560 RNA polymerase Rpb2, domain 7 YPZ3_3306 PF04561 RNA polymerase Rpb2, domain 2 YPZ3_3307 PF00542 Ribosomal protein L7/L12 C-terminal domain YPZ3_3307 PF16320 Ribosomal protein L7/L12 dimerisation domain YPZ3_3308 PF00466 Ribosomal protein L10 YPZ3_3309 PF00687 Ribosomal protein L1p/L10e family YPZ3_3310 PF03946 Ribosomal protein L11, N-terminal domain YPZ3_3310 PF00298 Ribosomal protein L11, RNA binding domain YPZ3_3311 PF02357 Transcription termination factor nusG YPZ3_3311 PF00467 KOW motif YPZ3_3312 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YPZ3_3313 PF03143 Elongation factor Tu C-terminal domain YPZ3_3313 PF00009 Elongation factor Tu GTP binding domain YPZ3_3313 PF03144 Elongation factor Tu domain 2 YPZ3_3314 PF01695 IstB-like ATP binding protein YPZ3_3315 PF00665 Integrase core domain YPZ3_3315 PF02796 Helix-turn-helix domain of resolvase YPZ3_3316 PF13673 Acetyltransferase (GNAT) domain YPZ3_3317 PF00485 Phosphoribulokinase / Uridine kinase family YPZ3_3318 PF08279 HTH domain YPZ3_3318 PF03099 Biotin/lipoate A/B protein ligase family YPZ3_3318 PF02237 Biotin protein ligase C terminal domain YPZ3_3319 PF01565 FAD binding domain YPZ3_3319 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YPZ3_3320 PF02386 Cation transport protein YPZ3_3321 PF09186 Domain of unknown function (DUF1949) YPZ3_3321 PF01205 Uncharacterized protein family UPF0029 YPZ3_3323 PF00557 Metallopeptidase family M24 YPZ3_3324 PF00378 Enoyl-CoA hydratase/isomerase YPZ3_3324 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPZ3_3324 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPZ3_3325 PF02803 Thiolase, C-terminal domain YPZ3_3325 PF00108 Thiolase, N-terminal domain YPZ3_3326 PF00175 Oxidoreductase NAD-binding domain YPZ3_3326 PF00970 Oxidoreductase FAD-binding domain YPZ3_3327 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPZ3_3328 PF02357 Transcription termination factor nusG YPZ3_3329 PF00490 Delta-aminolevulinic acid dehydratase YPZ3_3330 PF01026 TatD related DNase YPZ3_3331 PF01695 IstB-like ATP binding protein YPZ3_3332 PF02796 Helix-turn-helix domain of resolvase YPZ3_3332 PF00665 Integrase core domain YPZ3_3333 PF01026 TatD related DNase YPZ3_3334 PF00902 Sec-independent protein translocase protein (TatC) YPZ3_3336 PF03109 ABC1 family YPZ3_3337 PF02036 SCP-2 sterol transfer family YPZ3_3338 PF01209 ubiE/COQ5 methyltransferase family YPZ3_3339 PF02646 RmuC family YPZ3_3340 PF09335 SNARE associated Golgi protein YPZ3_3341 PF02554 Carbon starvation protein CstA YPZ3_3341 PF13722 5TM C-terminal transporter carbon starvation CstA YPZ3_3343 PF01048 Phosphorylase superfamily YPZ3_3344 PF01738 Dienelactone hydrolase family YPZ3_3345 PF08267 Cobalamin-independent synthase, N-terminal domain YPZ3_3345 PF01717 Cobalamin-independent synthase, Catalytic domain YPZ3_3346 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_3346 PF03466 LysR substrate binding domain YPZ3_3347 PF03547 Membrane transport protein YPZ3_3348 PF03009 Glycerophosphoryl diester phosphodiesterase family YPZ3_3349 PF00005 ABC transporter YPZ3_3349 PF17912 MalK OB fold domain YPZ3_3350 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_3351 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_3352 PF13416 Bacterial extracellular solute-binding protein YPZ3_3360 PF00005 ABC transporter YPZ3_3361 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPZ3_3361 PF00005 ABC transporter YPZ3_3362 PF11862 Domain of unknown function (DUF3382) YPZ3_3362 PF02653 Branched-chain amino acid transport system / permease component YPZ3_3363 PF02653 Branched-chain amino acid transport system / permease component YPZ3_3364 PF13458 Periplasmic binding protein YPZ3_3365 PF12568 Acetyltransferase (GNAT) domain, PanZ YPZ3_3366 PF01797 Transposase IS200 like YPZ3_3367 PF00140 Sigma-70 factor, region 1.2 YPZ3_3367 PF04545 Sigma-70, region 4 YPZ3_3367 PF04542 Sigma-70 region 2 YPZ3_3368 PF18075 FtsX extracellular domain YPZ3_3368 PF02687 FtsX-like permease family YPZ3_3369 PF00005 ABC transporter YPZ3_3370 PF00448 SRP54-type protein, GTPase domain YPZ3_3370 PF02881 SRP54-type protein, helical bundle domain YPZ3_3370 PF00448 SRP54-type protein, GTPase domain YPZ3_3370 PF02881 SRP54-type protein, helical bundle domain YPZ3_3374 PF07947 YhhN family YPZ3_3375 PF00403 Heavy-metal-associated domain YPZ3_3376 PF01206 Sulfurtransferase TusA YPZ3_3377 PF02592 Putative vitamin uptake transporter YPZ3_3378 PF08786 DcrB YPZ3_3379 PF02754 Cysteine-rich domain YPZ3_3379 PF13183 4Fe-4S dicluster domain YPZ3_3380 PF00890 FAD binding domain YPZ3_3381 PF01266 FAD dependent oxidoreductase YPZ3_3381 PF04324 BFD-like [2Fe-2S] binding domain YPZ3_3382 PF03009 Glycerophosphoryl diester phosphodiesterase family YPZ3_3385 PF12146 Serine aminopeptidase, S33 YPZ3_3386 PF01810 LysE type translocator YPZ3_3387 PF01810 LysE type translocator YPZ3_3388 PF00270 DEAD/DEAH box helicase YPZ3_3388 PF00271 Helicase conserved C-terminal domain YPZ3_3388 PF09382 RQC domain YPZ3_3388 PF16124 RecQ zinc-binding YPZ3_3388 PF00570 HRDC domain YPZ3_3389 PF02253 Phospholipase A1 YPZ3_3390 PF03061 Thioesterase superfamily YPZ3_3391 PF00892 EamA-like transporter family YPZ3_3392 PF01544 CorA-like Mg2+ transporter protein YPZ3_3393 PF09370 Phosphoenolpyruvate hydrolase-like YPZ3_3396 PF13361 UvrD-like helicase C-terminal domain YPZ3_3396 PF00580 UvrD/REP helicase N-terminal domain YPZ3_3397 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_3398 PF00589 Phage integrase family YPZ3_3398 PF02899 Phage integrase, N-terminal SAM-like domain YPZ3_3399 PF04340 Protein of unknown function, DUF484 YPZ3_3400 PF01678 Diaminopimelate epimerase YPZ3_3401 PF01491 Frataxin-like domain YPZ3_3402 PF01295 Adenylate cyclase, class-I YPZ3_3402 PF12633 Adenylate cyclase NT domain YPZ3_3403 PF03900 Porphobilinogen deaminase, C-terminal domain YPZ3_3403 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YPZ3_3404 PF02602 Uroporphyrinogen-III synthase HemD YPZ3_3405 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YPZ3_3406 PF07219 HemY protein N-terminus YPZ3_3406 PF07719 Tetratricopeptide repeat YPZ3_3408 PF00324 Amino acid permease YPZ3_3409 PF03808 Glycosyl transferase WecB/TagA/CpsF family YPZ3_3410 PF06899 WzyE protein, O-antigen assembly polymerase YPZ3_3411 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YPZ3_3412 PF01943 Polysaccharide biosynthesis protein YPZ3_3413 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPZ3_3415 PF00483 Nucleotidyl transferase YPZ3_3416 PF16363 GDP-mannose 4,6 dehydratase YPZ3_3417 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPZ3_3417 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPZ3_3417 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPZ3_3418 PF02350 UDP-N-acetylglucosamine 2-epimerase YPZ3_3419 PF02706 Chain length determinant protein YPZ3_3420 PF00953 Glycosyl transferase family 4 YPZ3_3421 PF07498 Rho termination factor, N-terminal domain YPZ3_3421 PF07497 Rho termination factor, RNA-binding domain YPZ3_3421 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPZ3_3422 PF00085 Thioredoxin YPZ3_3423 PF00270 DEAD/DEAH box helicase YPZ3_3423 PF00271 Helicase conserved C-terminal domain YPZ3_3424 PF02541 Ppx/GppA phosphatase family YPZ3_3425 PF00580 UvrD/REP helicase N-terminal domain YPZ3_3425 PF13361 UvrD-like helicase C-terminal domain YPZ3_3427 PF00872 Transposase, Mutator family YPZ3_3429 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_3429 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_3430 PF00577 Outer membrane usher protein YPZ3_3430 PF13954 PapC N-terminal domain YPZ3_3430 PF13953 PapC C-terminal domain YPZ3_3432 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_3432 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_3434 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YPZ3_3434 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YPZ3_3435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_3435 PF03466 LysR substrate binding domain YPZ3_3439 PF00585 C-terminal regulatory domain of Threonine dehydratase YPZ3_3439 PF00291 Pyridoxal-phosphate dependent enzyme YPZ3_3440 PF00920 Dehydratase family YPZ3_3441 PF01063 Amino-transferase class IV YPZ3_3442 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPZ3_3442 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPZ3_3442 PF00205 Thiamine pyrophosphate enzyme, central domain YPZ3_3443 PF01078 Magnesium chelatase, subunit ChlI YPZ3_3443 PF13335 Magnesium chelatase, subunit ChlI C-terminal YPZ3_3444 PF04219 Protein of unknown function, DUF YPZ3_3445 PF03466 LysR substrate binding domain YPZ3_3445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_3446 PF02653 Branched-chain amino acid transport system / permease component YPZ3_3447 PF02653 Branched-chain amino acid transport system / permease component YPZ3_3448 PF00005 ABC transporter YPZ3_3449 PF13407 Periplasmic binding protein domain YPZ3_3450 PF01177 Asp/Glu/Hydantoin racemase YPZ3_3451 PF07715 TonB-dependent Receptor Plug Domain YPZ3_3451 PF00593 TonB dependent receptor YPZ3_3452 PF05958 tRNA (Uracil-5-)-methyltransferase YPZ3_3453 PF07226 Protein of unknown function (DUF1422) YPZ3_3454 PF00440 Bacterial regulatory proteins, tetR family YPZ3_3455 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPZ3_3455 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_3456 PF03466 LysR substrate binding domain YPZ3_3456 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_3457 PF00462 Glutaredoxin YPZ3_3457 PF08534 Redoxin YPZ3_3458 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPZ3_3458 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_3459 PF03544 Gram-negative bacterial TonB protein C-terminal YPZ3_3460 PF00529 HlyD membrane-fusion protein of T1SS YPZ3_3461 PF00005 ABC transporter YPZ3_3461 PF00664 ABC transporter transmembrane region YPZ3_3463 PF00593 TonB dependent receptor YPZ3_3463 PF07715 TonB-dependent Receptor Plug Domain YPZ3_3464 PF00206 Lyase YPZ3_3464 PF14698 Argininosuccinate lyase C-terminal YPZ3_3465 PF00696 Amino acid kinase family YPZ3_3466 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPZ3_3466 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPZ3_3467 PF07687 Peptidase dimerisation domain YPZ3_3467 PF01546 Peptidase family M20/M25/M40 YPZ3_3468 PF00311 Phosphoenolpyruvate carboxylase YPZ3_3470 PF13333 Integrase core domain YPZ3_3470 PF13276 HTH-like domain YPZ3_3470 PF00665 Integrase core domain YPZ3_3471 PF07690 Major Facilitator Superfamily YPZ3_3474 PF01526 Tn3 transposase DDE domain YPZ3_3474 PF13700 Domain of unknown function (DUF4158) YPZ3_3475 PF09106 Elongation factor SelB, winged helix YPZ3_3475 PF09107 Elongation factor SelB, winged helix YPZ3_3475 PF03144 Elongation factor Tu domain 2 YPZ3_3475 PF00009 Elongation factor Tu GTP binding domain YPZ3_3476 PF12390 Selenocysteine synthase N terminal YPZ3_3476 PF03841 L-seryl-tRNA selenium transferase YPZ3_3477 PF04216 Protein involved in formate dehydrogenase formation YPZ3_3478 PF01292 Prokaryotic cytochrome b561 YPZ3_3479 PF09163 Formate dehydrogenase N, transmembrane YPZ3_3479 PF13247 4Fe-4S dicluster domain YPZ3_3480 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_3480 PF00384 Molybdopterin oxidoreductase YPZ3_3480 PF01568 Molydopterin dinucleotide binding domain YPZ3_3481 PF01568 Molydopterin dinucleotide binding domain YPZ3_3481 PF00384 Molybdopterin oxidoreductase YPZ3_3481 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_3482 PF02634 FdhD/NarQ family YPZ3_3483 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPZ3_3483 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPZ3_3484 PF02203 Tar ligand binding domain homologue YPZ3_3484 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_3484 PF00672 HAMP domain YPZ3_3487 PF10928 Protein of unknown function (DUF2810) YPZ3_3488 PF05068 Mannitol repressor YPZ3_3489 PF08125 Mannitol dehydrogenase C-terminal domain YPZ3_3489 PF01232 Mannitol dehydrogenase Rossmann domain YPZ3_3490 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPZ3_3490 PF02378 Phosphotransferase system, EIIC YPZ3_3490 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPZ3_3491 PF11254 Protein of unknown function (DUF3053) YPZ3_3492 PF02092 Glycyl-tRNA synthetase beta subunit YPZ3_3492 PF05746 DALR anticodon binding domain YPZ3_3493 PF02091 Glycyl-tRNA synthetase alpha subunit YPZ3_3494 PF03352 Methyladenine glycosylase YPZ3_3496 PF13488 Glycine zipper YPZ3_3496 PF00691 OmpA family YPZ3_3498 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPZ3_3498 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_3499 PF00128 Alpha amylase, catalytic domain YPZ3_3501 PF00155 Aminotransferase class I and II YPZ3_3502 PF06826 Predicted Permease Membrane Region YPZ3_3502 PF02080 TrkA-C domain YPZ3_3503 PF00011 Hsp20/alpha crystallin family YPZ3_3504 PF00011 Hsp20/alpha crystallin family YPZ3_3505 PF07119 Protein of unknown function (DUF1375) YPZ3_3506 PF07676 WD40-like Beta Propeller Repeat YPZ3_3506 PF12566 Protein of unknown function (DUF3748) YPZ3_3507 PF12566 Protein of unknown function (DUF3748) YPZ3_3507 PF07676 WD40-like Beta Propeller Repeat YPZ3_3508 PF00291 Pyridoxal-phosphate dependent enzyme YPZ3_3508 PF13291 ACT domain YPZ3_3509 PF02423 Ornithine cyclodeaminase/mu-crystallin family YPZ3_3511 PF13333 Integrase core domain YPZ3_3511 PF00665 Integrase core domain YPZ3_3511 PF13276 HTH-like domain YPZ3_3513 PF00204 DNA gyrase B YPZ3_3513 PF00986 DNA gyrase B subunit, carboxyl terminus YPZ3_3513 PF18053 DNA gyrase B subunit insert domain YPZ3_3513 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_3513 PF01751 Toprim domain YPZ3_3514 PF02463 RecF/RecN/SMC N terminal domain YPZ3_3515 PF00712 DNA polymerase III beta subunit, N-terminal domain YPZ3_3515 PF02768 DNA polymerase III beta subunit, C-terminal domain YPZ3_3515 PF02767 DNA polymerase III beta subunit, central domain YPZ3_3516 PF08299 Bacterial dnaA protein helix-turn-helix YPZ3_3516 PF11638 DnaA N-terminal domain YPZ3_3516 PF00308 Bacterial dnaA protein YPZ3_3517 PF02096 60Kd inner membrane protein YPZ3_3517 PF14849 YidC periplasmic domain YPZ3_3518 PF01926 50S ribosome-binding GTPase YPZ3_3518 PF12631 MnmE helical domain YPZ3_3518 PF10396 GTP-binding protein TrmE N-terminus YPZ3_3519 PF07055 Enoyl reductase FAD binding domain YPZ3_3519 PF12241 Trans-2-enoyl-CoA reductase catalytic region YPZ3_3519 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YPZ3_3521 PF00860 Permease family YPZ3_3522 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_3523 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_3524 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_3525 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_3527 PF01895 PhoU domain YPZ3_3528 PF00005 ABC transporter YPZ3_3529 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_3530 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_3531 PF12849 PBP superfamily domain YPZ3_3532 PF01380 SIS domain YPZ3_3533 PF12804 MobA-like NTP transferase domain YPZ3_3533 PF00132 Bacterial transferase hexapeptide (six repeats) YPZ3_3534 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YPZ3_3534 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YPZ3_3535 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPZ3_3535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPZ3_3536 PF00231 ATP synthase YPZ3_3537 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPZ3_3537 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPZ3_3537 PF00306 ATP synthase alpha/beta chain, C terminal domain YPZ3_3538 PF00213 ATP synthase delta (OSCP) subunit YPZ3_3539 PF00430 ATP synthase B/B' CF(0) YPZ3_3540 PF00119 ATP synthase A chain YPZ3_3541 PF03899 ATP synthase I chain YPZ3_3542 PF02527 rRNA small subunit methyltransferase G YPZ3_3543 PF13932 GidA associated domain YPZ3_3543 PF01134 Glucose inhibited division protein A YPZ3_pCD0001 PF13683 Integrase core domain YPZ3_pCD0001 PF13276 HTH-like domain YPZ3_pCD0002 PF05932 Tir chaperone protein (CesT) family YPZ3_pCD0003 PF09020 YopE, N terminal YPZ3_pCD0003 PF03545 Yersinia virulence determinant (YopE) YPZ3_pCD0005 PF18090 Centromere-binding protein HTH domain YPZ3_pCD0005 PF02195 ParB-like nuclease domain YPZ3_pCD0006 PF13614 AAA domain YPZ3_pCD0007 PF00665 Integrase core domain YPZ3_pCD0007 PF13333 Integrase core domain YPZ3_pCD0007 PF13276 HTH-like domain YPZ3_pCD0009 PF05818 Enterobacterial TraT complement resistance protein YPZ3_pCD0011 PF03543 Yersinia/Haemophilus virulence surface antigen YPZ3_pCD0012 PF05932 Tir chaperone protein (CesT) family YPZ3_pCD0015 PF12468 Type III secretion system leucine rich repeat protein YPZ3_pCD0016 PF13610 DDE domain YPZ3_pCD0017 PF05844 YopD protein YPZ3_pCD0018 PF04888 Secretion system effector C (SseC) like family YPZ3_pCD0019 PF07720 Tetratricopeptide repeat YPZ3_pCD0020 PF04792 V antigen (LcrV) protein YPZ3_pCD0021 PF09621 Type III secretion system regulator (LcrR) YPZ3_pCD0022 PF00771 FHIPEP family YPZ3_pCD0024 PF09474 Type III secretion system YscX (type_III_YscX) YPZ3_pCD0026 PF07201 HrpJ-like domain YPZ3_pCD0027 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPZ3_pCD0027 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPZ3_pCD0027 PF18269 T3SS EscN ATPase C-terminal domain YPZ3_pCD0028 PF07321 Type III secretion protein YscO YPZ3_pCD0029 PF02120 Flagellar hook-length control protein FliK YPZ3_pCD0030 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPZ3_pCD0031 PF00813 FliP family YPZ3_pCD0032 PF01311 Bacterial export proteins, family 1 YPZ3_pCD0033 PF01312 FlhB HrpN YscU SpaS Family YPZ3_pCD0035 PF02311 AraC-like ligand binding domain YPZ3_pCD0035 PF12833 Helix-turn-helix domain YPZ3_pCD0036 PF05932 Tir chaperone protein (CesT) family YPZ3_pCD0039 PF16697 Inner membrane component of T3SS, cytoplasmic domain YPZ3_pCD0039 PF16693 Inner membrane component of T3SS, periplasmic domain YPZ3_pCD0040 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) YPZ3_pCD0041 PF09025 YopR, type III needle-polymerisation regulator YPZ3_pCD0042 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI YPZ3_pCD0043 PF01514 Secretory protein of YscJ/FliF family YPZ3_pCD0044 PF06578 YOP proteins translocation protein K (YscK) YPZ3_pCD0045 PF02108 Flagellar assembly protein FliH YPZ3_pCD0046 PF09013 YopH, N-terminal YPZ3_pCD0048 PF13683 Integrase core domain YPZ3_pCD0048 PF13276 HTH-like domain YPZ3_pCD0049 PF09013 YopH, N-terminal YPZ3_pCD0049 PF00102 Protein-tyrosine phosphatase YPZ3_pCD0050 PF13276 HTH-like domain YPZ3_pCD0050 PF13683 Integrase core domain YPZ3_pCD0052 PF00069 Protein kinase domain YPZ3_pCD0052 PF09632 Rac1-binding domain YPZ3_pCD0054 PF02387 IncFII RepA protein family YPZ3_pCD0057 PF07057 DNA helicase TraI YPZ3_pCD0057 PF18272 single-stranded DNA binding TraI N-terminal subdomain YPZ3_pCD0057 PF08751 TrwC relaxase YPZ3_pCD0057 PF18340 DNA relaxase TraI 2B/2B-like domain YPZ3_pCD0058 PF05662 Coiled stalk of trimeric autotransporter adhesin YPZ3_pCD0058 PF03895 YadA-like membrane anchor domain YPZ3_pCD0058 PF05658 Head domain of trimeric autotransporter adhesin YPZ3_pCD0060 PF13700 Domain of unknown function (DUF4158) YPZ3_pCD0060 PF01526 Tn3 transposase DDE domain YPZ3_pCD0061 PF00239 Resolvase, N terminal domain YPZ3_pCD0061 PF02796 Helix-turn-helix domain of resolvase YPZ3_pCD0064 PF13683 Integrase core domain YPZ3_pCD0064 PF13276 HTH-like domain YPZ3_pCD0066 PF01695 IstB-like ATP binding protein YPZ3_pMT0001 PF00665 Integrase core domain YPZ3_pMT0001 PF02796 Helix-turn-helix domain of resolvase YPZ3_pMT0002 PF01695 IstB-like ATP binding protein YPZ3_pMT0003 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPZ3_pMT0004 PF03335 Phage tail fibre repeat YPZ3_pMT0004 PF03335 Phage tail fibre repeat YPZ3_pMT0004 PF07484 Phage Tail Collar Domain YPZ3_pMT0004 PF08400 Prophage tail fibre N-terminal YPZ3_pMT0004 PF07484 Phage Tail Collar Domain YPZ3_pMT0004 PF08400 Prophage tail fibre N-terminal YPZ3_pMT0026 PF00664 ABC transporter transmembrane region YPZ3_pMT0026 PF00005 ABC transporter YPZ3_pMT0026 PF03412 Peptidase C39 family YPZ3_pMT0027 PF02195 ParB-like nuclease domain YPZ3_pMT0027 PF17762 HTH domain found in ParB protein YPZ3_pMT0028 PF17762 HTH domain found in ParB protein YPZ3_pMT0028 PF02195 ParB-like nuclease domain YPZ3_pMT0029 PF17191 RecG wedge domain YPZ3_pMT0029 PF00271 Helicase conserved C-terminal domain YPZ3_pMT0029 PF00270 DEAD/DEAH box helicase YPZ3_pMT0034 PF01797 Transposase IS200 like YPZ3_pMT0041 PF01051 Initiator Replication protein YPZ3_pMT0046 PF00154 recA bacterial DNA recombination protein YPZ3_pMT0047 PF01367 5'-3' exonuclease, C-terminal SAM fold YPZ3_pMT0047 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPZ3_pMT0052 PF14579 Helix-hairpin-helix motif YPZ3_pMT0052 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPZ3_pMT0052 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPZ3_pMT0052 PF02811 PHP domain YPZ3_pMT0054 PF06213 Cobalamin biosynthesis protein CobT YPZ3_pMT0054 PF11775 Cobalamin biosynthesis protein CobT VWA domain YPZ3_pMT0057 PF09255 Caf1 Capsule antigen YPZ3_pMT0058 PF13953 PapC C-terminal domain YPZ3_pMT0058 PF13954 PapC N-terminal domain YPZ3_pMT0058 PF00577 Outer membrane usher protein YPZ3_pMT0059 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_pMT0059 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_pMT0060 PF12833 Helix-turn-helix domain YPZ3_pMT0060 PF06445 GyrI-like small molecule binding domain YPZ3_pMT0061 PF00872 Transposase, Mutator family YPZ3_pMT0062 PF01548 Transposase YPZ3_pMT0062 PF02371 Transposase IS116/IS110/IS902 family YPZ3_pMT0063 PF04754 Putative transposase, YhgA-like YPZ3_pMT0064 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) YPZ3_pMT0066 PF13091 PLD-like domain YPZ3_pMT0067 PF04754 Putative transposase, YhgA-like YPZ3_pMT0068 PF00239 Resolvase, N terminal domain YPZ3_pMT0068 PF02796 Helix-turn-helix domain of resolvase YPZ3_pMT0069 PF13614 AAA domain YPZ3_pMT0069 PF18607 ParA helix turn helix domain YPZ3_pMT0070 PF02195 ParB-like nuclease domain YPZ3_pMT0070 PF08775 ParB family YPZ3_pMT0072 PF01555 DNA methylase YPZ3_pMT0073 PF07128 Protein of unknown function (DUF1380) YPZ3_pMT0076 PF02195 ParB-like nuclease domain YPZ3_pPCP0001 PF00665 Integrase core domain YPZ3_pPCP0001 PF02796 Helix-turn-helix domain of resolvase YPZ3_pPCP0002 PF01695 IstB-like ATP binding protein YPZ3_pPCP0007 PF01278 Omptin family YPZ3_pPCP0008 PF05973 Phage derived protein Gp49-like (DUF891)