YPZ3_0001	PF00258	Flavodoxin
YPZ3_0002	PF01037	AsnC family
YPZ3_0002	PF13412	Winged helix-turn-helix DNA-binding
YPZ3_0003	PF03590	Aspartate-ammonia ligase
YPZ3_0004	PF05762	VWA domain containing CoxE-like protein
YPZ3_0005	PF07728	AAA domain (dynein-related subfamily)
YPZ3_0005	PF12592	Protein of unknown function (DUF3763)
YPZ3_0006	PF02705	YPZ3_0006
YPZ3_0007	PF05025	RbsD / FucU transport protein family
YPZ3_0008	PF00294	pfkB family carbohydrate kinase
YPZ3_0009	PF07690	Major Facilitator Superfamily
YPZ3_0010	PF00392	Bacterial regulatory proteins, gntR family
YPZ3_0010	PF07729	FCD domain
YPZ3_0011	PF00872	YPZ3_0011
YPZ3_0012	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
YPZ3_0013	PF12804	MobA-like NTP transferase domain
YPZ3_0014	PF01636	Phosphotransferase enzyme family
YPZ3_0015	PF01323	DSBA-like thioredoxin domain
YPZ3_0016	PF00476	DNA polymerase family A
YPZ3_0016	PF01367	5'-3' exonuclease, C-terminal SAM fold
YPZ3_0016	PF01612	3'-5' exonuclease
YPZ3_0016	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
YPZ3_0017	PF01797	Transposase IS200 like
YPZ3_0018	PF01926	50S ribosome-binding GTPase
YPZ3_0019	PF04220	YPZ3_0019
YPZ3_0020	PF04055	Radical SAM superfamily
YPZ3_0020	PF06969	HemN C-terminal domain
YPZ3_0021	PF00072	Response regulator receiver domain
YPZ3_0021	PF00158	Sigma-54 interaction domain
YPZ3_0021	PF02954	Bacterial regulatory protein, Fis family
YPZ3_0022	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_0022	PF00989	PAS fold
YPZ3_0022	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_0023	PF00120	Glutamine synthetase, catalytic domain
YPZ3_0023	PF03951	Glutamine synthetase, beta-Grasp domain
YPZ3_0024	PF00009	Elongation factor Tu GTP binding domain
YPZ3_0024	PF00679	Elongation factor G C-terminus
YPZ3_0024	PF03144	Elongation factor Tu domain 2
YPZ3_0025	PF13419	Haloacid dehalogenase-like hydrolase
YPZ3_0026	PF03631	YPZ3_0026
YPZ3_0027	PF02580	D-Tyr-tRNA(Tyr) deacylase
YPZ3_0028	PF01695	IstB-like ATP binding protein
YPZ3_0029	PF00665	Integrase core domain
YPZ3_0029	PF02796	Helix-turn-helix domain of resolvase
YPZ3_0030	PF00583	Acetyltransferase (GNAT) family
YPZ3_0030	PF09500	Putative thioesterase (yiiD_Cterm)
YPZ3_0032	PF00860	Permease family
YPZ3_0033	PF03616	YPZ3_0033
YPZ3_0034	PF00270	DEAD/DEAH box helicase
YPZ3_0034	PF00271	Helicase conserved C-terminal domain
YPZ3_0034	PF17191	YPZ3_0034
YPZ3_0035	PF00588	SpoU rRNA Methylase family
YPZ3_0035	PF12105	SpoU, rRNA methylase, C-terminal
YPZ3_0036	PF02824	TGS domain
YPZ3_0036	PF04607	Region found in RelA / SpoT proteins
YPZ3_0036	PF13291	ACT domain
YPZ3_0036	PF13328	HD domain
YPZ3_0037	PF00625	Guanylate kinase
YPZ3_0038	PF01653	NAD-dependent DNA ligase adenylation domain
YPZ3_0038	PF03120	NAD-dependent DNA ligase OB-fold domain
YPZ3_0039	PF03458	YPZ3_0039
YPZ3_0040	PF03755	YPZ3_0040
YPZ3_0040	PF08340	YPZ3_0040
YPZ3_0041	PF01138	3' exoribonuclease family, domain 1
YPZ3_0041	PF03725	3' exoribonuclease family, domain 2
YPZ3_0042	PF00156	Phosphoribosyl transferase domain
YPZ3_0043	PF00440	Bacterial regulatory proteins, tetR family
YPZ3_0044	PF00692	dUTPase
YPZ3_0045	PF02441	Flavoprotein
YPZ3_0045	PF04127	DNA / pantothenate metabolism flavoprotein
YPZ3_0046	PF04002	RadC-like JAB domain
YPZ3_0047	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
YPZ3_0047	PF06827	Zinc finger found in FPG and IleRS
YPZ3_0047	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
YPZ3_0048	PF01467	Cytidylyltransferase
YPZ3_0049	PF00535	Glycosyl transferase family 2
YPZ3_0050	PF00534	Glycosyl transferases group 1
YPZ3_0050	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
YPZ3_0051	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YPZ3_0052	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YPZ3_0053	PF01370	NAD dependent epimerase/dehydratase family
YPZ3_0054	PF00155	Aminotransferase class I and II
YPZ3_0055	PF00107	Zinc-binding dehydrogenase
YPZ3_0055	PF08240	Alcohol dehydrogenase GroES-like domain
YPZ3_0056	PF04748	Divergent polysaccharide deacetylase
YPZ3_0057	PF04748	Divergent polysaccharide deacetylase
YPZ3_0058	PF01551	Peptidase family M23
YPZ3_0059	PF01676	Metalloenzyme superfamily
YPZ3_0059	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
YPZ3_0060	PF00581	Rhodanese-like domain
YPZ3_0061	PF02556	Preprotein translocase subunit SecB
YPZ3_0062	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
YPZ3_0062	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
YPZ3_0063	PF00132	Bacterial transferase hexapeptide (six repeats)
YPZ3_0063	PF06426	Serine acetyltransferase, N-terminal
YPZ3_0064	PF00588	SpoU rRNA Methylase family
YPZ3_0065	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
YPZ3_0065	PF02805	Metal binding domain of Ada
YPZ3_0065	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
YPZ3_0065	PF12833	Helix-turn-helix domain
YPZ3_0066	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_0066	PF00672	HAMP domain
YPZ3_0066	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_0066	PF16527	YPZ3_0066
YPZ3_0067	PF00072	Response regulator receiver domain
YPZ3_0067	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_0068	PF07813	LTXXQ motif family protein
YPZ3_0069	PF04754	YPZ3_0069
YPZ3_0070	PF01545	Cation efflux family
YPZ3_0070	PF16916	YPZ3_0070
YPZ3_0071	PF00365	Phosphofructokinase
YPZ3_0072	PF13531	Bacterial extracellular solute-binding protein
YPZ3_0073	PF13531	Bacterial extracellular solute-binding protein
YPZ3_0074	PF00939	Sodium:sulfate symporter transmembrane region
YPZ3_0075	PF03737	Demethylmenaquinone methyltransferase
YPZ3_0076	PF02585	GlcNAc-PI de-N-acetylase
YPZ3_0077	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_0077	PF03466	LysR substrate binding domain
YPZ3_0078	PF00121	Triosephosphate isomerase
YPZ3_0079	PF07305	YPZ3_0079
YPZ3_0080	PF05656	YPZ3_0080
YPZ3_0081	PF00175	Oxidoreductase NAD-binding domain
YPZ3_0081	PF00970	Oxidoreductase FAD-binding domain
YPZ3_0082	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
YPZ3_0083	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPZ3_0083	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPZ3_0084	PF00230	Major intrinsic protein
YPZ3_0085	PF01797	Transposase IS200 like
YPZ3_0086	PF00005	ABC transporter
YPZ3_0086	PF00664	ABC transporter transmembrane region
YPZ3_0086	PF03412	Peptidase C39 family
YPZ3_0087	PF13437	HlyD family secretion protein
YPZ3_0088	PF14016	YPZ3_0088
YPZ3_0089	PF03737	Demethylmenaquinone methyltransferase
YPZ3_0090	PF01040	UbiA prenyltransferase family
YPZ3_0091	PF00004	ATPase family associated with various cellular activities (AAA)
YPZ3_0091	PF07724	AAA domain (Cdc48 subfamily)
YPZ3_0091	PF10431	C-terminal, D2-small domain, of ClpB protein
YPZ3_0092	PF00227	Proteasome subunit
YPZ3_0093	PF05036	Sporulation related domain
YPZ3_0094	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_0094	PF13377	Periplasmic binding protein-like domain
YPZ3_0095	PF00270	DEAD/DEAH box helicase
YPZ3_0095	PF00271	Helicase conserved C-terminal domain
YPZ3_0096	PF05360	YPZ3_0096
YPZ3_0097	PF01340	Met Apo-repressor, MetJ
YPZ3_0098	PF01053	Cys/Met metabolism PLP-dependent enzyme
YPZ3_0099	PF00696	Amino acid kinase family
YPZ3_0099	PF00742	Homoserine dehydrogenase
YPZ3_0099	PF03447	Homoserine dehydrogenase, NAD binding domain
YPZ3_0100	PF02219	Methylenetetrahydrofolate reductase
YPZ3_0101	PF00665	Integrase core domain
YPZ3_0101	PF13276	YPZ3_0101
YPZ3_0102	PF13518	Helix-turn-helix domain
YPZ3_0103	PF00455	YPZ3_0103
YPZ3_0103	PF08220	DeoR-like helix-turn-helix domain
YPZ3_0104	PF01694	Rhomboid family
YPZ3_0104	PF12122	Protein of unknown function (DUF3582)
YPZ3_0105	PF00581	Rhodanese-like domain
YPZ3_0106	PF00196	Bacterial regulatory proteins, luxR family
YPZ3_0108	PF00343	Carbohydrate phosphorylase
YPZ3_0109	PF02446	4-alpha-glucanotransferase
YPZ3_0110	PF01106	NifU-like domain
YPZ3_0110	PF01521	Iron-sulphur cluster biosynthesis
YPZ3_0111	PF00156	Phosphoribosyl transferase domain
YPZ3_0112	PF00561	alpha/beta hydrolase fold
YPZ3_0113	PF02421	Ferrous iron transport protein B
YPZ3_0113	PF07664	YPZ3_0113
YPZ3_0113	PF07670	Nucleoside recognition
YPZ3_0114	PF00575	S1 RNA binding domain
YPZ3_0114	PF09371	Tex-like protein N-terminal domain
YPZ3_0114	PF12836	Helix-hairpin-helix motif
YPZ3_0114	PF16921	YPZ3_0114
YPZ3_0115	PF01272	Transcription elongation factor, GreA/GreB, C-term
YPZ3_0115	PF03449	Transcription elongation factor, N-terminal
YPZ3_0116	PF00072	Response regulator receiver domain
YPZ3_0116	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_0117	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_0117	PF00672	HAMP domain
YPZ3_0117	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_0118	PF01293	Phosphoenolpyruvate carboxykinase
YPZ3_0119	PF01430	Hsp33 protein
YPZ3_0120	PF01479	S4 domain
YPZ3_0121	PF13419	Haloacid dehalogenase-like hydrolase
YPZ3_0122	PF07095	Intracellular growth attenuator protein IgaA
YPZ3_0123	PF00293	NUDIX domain
YPZ3_0124	PF00905	Penicillin binding protein transpeptidase domain
YPZ3_0124	PF00912	Transglycosylase
YPZ3_0124	PF17092	YPZ3_0124
YPZ3_0125	PF11104	Type IV pilus assembly protein PilM;
YPZ3_0126	PF05137	YPZ3_0126
YPZ3_0129	PF00263	YPZ3_0129
YPZ3_0129	PF03958	Bacterial type II/III secretion system short domain
YPZ3_0130	PF01202	Shikimate kinase
YPZ3_0131	PF01761	3-dehydroquinate synthase
YPZ3_0132	PF05036	Sporulation related domain
YPZ3_0133	PF02086	D12 class N6 adenine-specific DNA methyltransferase
YPZ3_0134	PF00834	Ribulose-phosphate 3 epimerase family
YPZ3_0135	PF13419	Haloacid dehalogenase-like hydrolase
YPZ3_0136	PF00579	tRNA synthetases class I (W and Y)
YPZ3_0137	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
YPZ3_0137	PF10414	Sirohaem synthase dimerisation region
YPZ3_0137	PF13241	Putative NAD(P)-binding
YPZ3_0137	PF14824	Sirohaem biosynthesis protein central
YPZ3_0138	PF01226	Formate/nitrite transporter
YPZ3_0139	PF13806	Rieske-like [2Fe-2S] domain
YPZ3_0140	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
YPZ3_0140	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
YPZ3_0140	PF04324	BFD-like [2Fe-2S] binding domain
YPZ3_0140	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPZ3_0141	PF07969	Amidohydrolase family
YPZ3_0142	PF07690	Major Facilitator Superfamily
YPZ3_0143	PF00593	TonB dependent receptor
YPZ3_0143	PF07715	TonB-dependent Receptor Plug Domain
YPZ3_0144	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_0144	PF13377	Periplasmic binding protein-like domain
YPZ3_0145	PF02056	Family 4 glycosyl hydrolase
YPZ3_0145	PF11975	Family 4 glycosyl hydrolase C-terminal domain
YPZ3_0146	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YPZ3_0147	PF05872	YPZ3_0147
YPZ3_0148	PF00117	Glutamine amidotransferase class-I
YPZ3_0149	PF00202	Aminotransferase class-III
YPZ3_0150	PF12805	YPZ3_0150
YPZ3_0150	PF13515	YPZ3_0150
YPZ3_0151	PF00027	Cyclic nucleotide-binding domain
YPZ3_0151	PF00325	Bacterial regulatory proteins, crp family
YPZ3_0152	PF02566	OsmC-like protein
YPZ3_0153	PF06836	YPZ3_0153
YPZ3_0154	PF00485	Phosphoribulokinase / Uridine kinase family
YPZ3_0155	PF00561	alpha/beta hydrolase fold
YPZ3_0156	PF01810	YPZ3_0156
YPZ3_0157	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YPZ3_0158	PF00005	ABC transporter
YPZ3_0159	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_0160	PF02668	Taurine catabolism dioxygenase TauD, TfdA family
YPZ3_0161	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YPZ3_0162	PF00535	Glycosyl transferase family 2
YPZ3_0163	PF00005	ABC transporter
YPZ3_0163	PF12848	ABC transporter
YPZ3_0164	PF00005	ABC transporter
YPZ3_0165	PF02525	Flavodoxin-like fold
YPZ3_0166	PF00999	Sodium/hydrogen exchanger family
YPZ3_0166	PF02254	TrkA-N domain
YPZ3_0167	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPZ3_0168	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPZ3_0168	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
YPZ3_0169	PF08348	YPZ3_0169
YPZ3_0169	PF13309	YPZ3_0169
YPZ3_0170	PF02635	DsrE/DsrF-like family
YPZ3_0171	PF02635	DsrE/DsrF-like family
YPZ3_0172	PF00164	Ribosomal protein S12/S23
YPZ3_0173	PF00177	Ribosomal protein S7p/S5e
YPZ3_0174	PF00009	Elongation factor Tu GTP binding domain
YPZ3_0174	PF00679	Elongation factor G C-terminus
YPZ3_0174	PF03144	Elongation factor Tu domain 2
YPZ3_0174	PF03764	Elongation factor G, domain IV
YPZ3_0174	PF14492	Elongation Factor G, domain II
YPZ3_0175	PF00009	Elongation factor Tu GTP binding domain
YPZ3_0175	PF03143	Elongation factor Tu C-terminal domain
YPZ3_0175	PF03144	Elongation factor Tu domain 2
YPZ3_0176	PF01797	Transposase IS200 like
YPZ3_0177	PF00210	Ferritin-like domain
YPZ3_0178	PF00338	Ribosomal protein S10p/S20e
YPZ3_0179	PF00297	Ribosomal protein L3
YPZ3_0180	PF00573	Ribosomal protein L4/L1 family
YPZ3_0181	PF00276	Ribosomal protein L23
YPZ3_0182	PF00181	Ribosomal Proteins L2, RNA binding domain
YPZ3_0182	PF03947	Ribosomal Proteins L2, C-terminal domain
YPZ3_0183	PF00237	Ribosomal protein L22p/L17e
YPZ3_0184	PF00189	Ribosomal protein S3, C-terminal domain
YPZ3_0184	PF07650	KH domain
YPZ3_0185	PF00252	Ribosomal protein L16p/L10e
YPZ3_0186	PF00238	Ribosomal protein L14p/L23e
YPZ3_0187	PF00467	KOW motif
YPZ3_0187	PF17136	YPZ3_0187
YPZ3_0188	PF00281	Ribosomal protein L5
YPZ3_0188	PF00673	ribosomal L5P family C-terminus
YPZ3_0189	PF00253	Ribosomal protein S14p/S29e
YPZ3_0190	PF00410	Ribosomal protein S8
YPZ3_0191	PF00347	Ribosomal protein L6
YPZ3_0192	PF00861	Ribosomal L18p/L5e family
YPZ3_0193	PF00333	Ribosomal protein S5, N-terminal domain
YPZ3_0193	PF03719	Ribosomal protein S5, C-terminal domain
YPZ3_0194	PF00828	Ribosomal protein L18e/L15
YPZ3_0195	PF00344	SecY translocase
YPZ3_0196	PF00416	Ribosomal protein S13/S18
YPZ3_0197	PF00411	Ribosomal protein S11
YPZ3_0198	PF00163	Ribosomal protein S4/S9 N-terminal domain
YPZ3_0198	PF01479	S4 domain
YPZ3_0199	PF01000	RNA polymerase Rpb3/RpoA insert domain
YPZ3_0199	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
YPZ3_0199	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
YPZ3_0200	PF01196	Ribosomal protein L17
YPZ3_0201	PF13411	MerR HTH family regulatory protein
YPZ3_0202	PF01741	Large-conductance mechanosensitive channel, MscL
YPZ3_0203	PF02080	TrkA-C domain
YPZ3_0203	PF02254	TrkA-N domain
YPZ3_0204	PF01029	NusB family
YPZ3_0204	PF01189	NOL1/NOP2/sun family
YPZ3_0205	PF00551	Formyl transferase
YPZ3_0205	PF02911	Formyl transferase, C-terminal domain
YPZ3_0206	PF01327	Polypeptide deformylase
YPZ3_0207	PF02481	DNA recombination-mediator protein A
YPZ3_0208	PF04361	YPZ3_0208
YPZ3_0209	PF01396	YPZ3_0209
YPZ3_0210	PF01300	Telomere recombination
YPZ3_0211	PF01488	Shikimate / quinate 5-dehydrogenase
YPZ3_0211	PF08501	Shikimate dehydrogenase substrate binding domain
YPZ3_0212	PF00132	Bacterial transferase hexapeptide (six repeats)
YPZ3_0213	PF01695	IstB-like ATP binding protein
YPZ3_0214	PF00665	Integrase core domain
YPZ3_0214	PF02796	Helix-turn-helix domain of resolvase
YPZ3_0215	PF12715	Abhydrolase family
YPZ3_0216	PF00474	Sodium:solute symporter family
YPZ3_0217	PF04341	YPZ3_0217
YPZ3_0218	PF00501	AMP-binding enzyme
YPZ3_0218	PF13193	AMP-binding enzyme C-terminal domain
YPZ3_0218	PF16177	YPZ3_0218
YPZ3_0219	PF00375	Sodium:dicarboxylate symporter family
YPZ3_0220	PF00072	Response regulator receiver domain
YPZ3_0220	PF00196	Bacterial regulatory proteins, luxR family
YPZ3_0221	PF00072	Response regulator receiver domain
YPZ3_0221	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_0221	PF01627	Hpt domain
YPZ3_0221	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_0222	PF00263	YPZ3_0222
YPZ3_0222	PF03958	Bacterial type II/III secretion system short domain
YPZ3_0223	PF16693	YPZ3_0223
YPZ3_0224	PF12833	Helix-turn-helix domain
YPZ3_0225	PF01514	Secretory protein of YscJ/FliF family
YPZ3_0226	PF13327	YPZ3_0226
YPZ3_0227	PF06188	YPZ3_0227
YPZ3_0228	PF00771	FHIPEP family
YPZ3_0229	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPZ3_0229	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YPZ3_0232	PF01052	Surface presentation of antigens (SPOA)
YPZ3_0233	PF00813	YPZ3_0233
YPZ3_0234	PF01311	YPZ3_0234
YPZ3_0235	PF01312	FlhB HrpN YscU SpaS Family
YPZ3_0236	PF04143	YPZ3_0236
YPZ3_0237	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_0237	PF03466	LysR substrate binding domain
YPZ3_0239	PF01053	Cys/Met metabolism PLP-dependent enzyme
YPZ3_0240	PF00005	ABC transporter
YPZ3_0241	PF01032	FecCD transport family
YPZ3_0242	PF01497	Periplasmic binding protein
YPZ3_0243	PF05171	Haemin-degrading HemS
YPZ3_0244	PF00593	TonB dependent receptor
YPZ3_0244	PF07715	TonB-dependent Receptor Plug Domain
YPZ3_0245	PF13460	NADH(P)-binding
YPZ3_0246	PF06228	Haem utilisation ChuX/HutX
YPZ3_0247	PF04055	Radical SAM superfamily
YPZ3_0248	PF02219	Methylenetetrahydrofolate reductase
YPZ3_0250	PF15617	YPZ3_0250
YPZ3_0251	PF11202	YPZ3_0251
YPZ3_0251	PF15608	YPZ3_0251
YPZ3_0253	PF12500	YPZ3_0253
YPZ3_0253	PF15609	YPZ3_0253
YPZ3_0254	PF15632	YPZ3_0254
YPZ3_0255	PF02342	TerD domain
YPZ3_0256	PF02342	TerD domain
YPZ3_0257	PF05099	Tellurite resistance protein TerB
YPZ3_0258	PF03741	YPZ3_0258
YPZ3_0259	PF02342	TerD domain
YPZ3_0260	PF02342	TerD domain
YPZ3_0261	PF06551	YPZ3_0261
YPZ3_0262	PF00577	Outer membrane usher protein
YPZ3_0262	PF13953	PapC C-terminal domain
YPZ3_0262	PF13954	PapC N-terminal domain
YPZ3_0263	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPZ3_0265	PF01565	FAD binding domain
YPZ3_0265	PF08031	Berberine and berberine like
YPZ3_0266	PF03797	Autotransporter beta-domain
YPZ3_0267	PF04345	Chorismate lyase
YPZ3_0268	PF01040	UbiA prenyltransferase family
YPZ3_0269	PF01553	Acyltransferase
YPZ3_0270	PF01219	Prokaryotic diacylglycerol kinase
YPZ3_0271	PF00717	Peptidase S24-like
YPZ3_0271	PF01726	LexA DNA binding domain
YPZ3_0272	PF01475	Ferric uptake regulator family
YPZ3_0273	PF01207	Dihydrouridine synthase (Dus)
YPZ3_0274	PF00107	Zinc-binding dehydrogenase
YPZ3_0274	PF08240	Alcohol dehydrogenase GroES-like domain
YPZ3_0275	PF00772	DnaB-like helicase N terminal domain
YPZ3_0275	PF03796	DnaB-like helicase C terminal domain
YPZ3_0276	PF00842	Alanine racemase, C-terminal domain
YPZ3_0276	PF01168	Alanine racemase, N-terminal domain
YPZ3_0277	PF00155	Aminotransferase class I and II
YPZ3_0278	PF04237	YjbR
YPZ3_0279	PF00005	ABC transporter
YPZ3_0280	PF00436	Single-strand binding protein family
YPZ3_0281	PF05336	Domain of unknown function (DUF718)
YPZ3_0282	PF00465	Iron-containing alcohol dehydrogenase
YPZ3_0283	PF00596	Class II Aldolase and Adducin N-terminal domain
YPZ3_0284	PF06134	L-rhamnose isomerase (RhaA)
YPZ3_0285	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPZ3_0285	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPZ3_0286	PF02311	AraC-like ligand binding domain
YPZ3_0286	PF12833	Helix-turn-helix domain
YPZ3_0287	PF02311	AraC-like ligand binding domain
YPZ3_0287	PF12833	Helix-turn-helix domain
YPZ3_0288	PF06379	YPZ3_0288
YPZ3_0290	PF03272	YPZ3_0290
YPZ3_0290	PF13402	Peptidase M60-like family
YPZ3_0291	PF13614	AAA domain
YPZ3_0292	PF00772	DnaB-like helicase N terminal domain
YPZ3_0292	PF03796	DnaB-like helicase C terminal domain
YPZ3_0294	PF10979	YPZ3_0294
YPZ3_0295	PF11198	YPZ3_0295
YPZ3_0296	PF13730	YPZ3_0296
YPZ3_0297	PF08900	YPZ3_0297
YPZ3_0299	PF01131	DNA topoisomerase
YPZ3_0299	PF01396	YPZ3_0299
YPZ3_0299	PF01751	Toprim domain
YPZ3_0300	PF12101	YPZ3_0300
YPZ3_0301	PF00436	Single-strand binding protein family
YPZ3_0302	PF01724	Domain of unknown function DUF29
YPZ3_0306	PF01464	Transglycosylase SLT domain
YPZ3_0307	PF11072	YPZ3_0307
YPZ3_0308	PF04471	Restriction endonuclease
YPZ3_0310	PF12696	TraM recognition site of TraD and TraG
YPZ3_0311	PF14348	YPZ3_0311
YPZ3_0312	PF09686	YPZ3_0312
YPZ3_0313	PF11190	YPZ3_0313
YPZ3_0314	PF11990	YPZ3_0314
YPZ3_0315	PF11444	YPZ3_0315
YPZ3_0316	PF11920	YPZ3_0316
YPZ3_0319	PF11130	YPZ3_0319
YPZ3_0321	PF07511	YPZ3_0321
YPZ3_0322	PF06834	YPZ3_0322
YPZ3_0324	PF07916	YPZ3_0324
YPZ3_0328	PF12834	YPZ3_0328
YPZ3_0328	PF12835	Integrase
YPZ3_0332	PF11284	YPZ3_0332
YPZ3_0333	PF08401	YPZ3_0333
YPZ3_0334	PF06924	Protein of unknown function (DUF1281)
YPZ3_0335	PF01527	Transposase
YPZ3_0336	PF05717	YPZ3_0336
YPZ3_0337	PF03050	YPZ3_0337
YPZ3_0337	PF13005	YPZ3_0337
YPZ3_0337	PF13007	YPZ3_0337
YPZ3_0337	PF13817	YPZ3_0337
YPZ3_0338	PF13561	Enoyl-(Acyl carrier protein) reductase
YPZ3_0339	PF00196	Bacterial regulatory proteins, luxR family
YPZ3_0340	PF13245	Part of AAA domain
YPZ3_0340	PF13361	UvrD-like helicase C-terminal domain
YPZ3_0341	PF07514	Putative helicase
YPZ3_0341	PF07515	Protein of unknown function (DUF1528)
YPZ3_0342	PF00589	Phage integrase family
YPZ3_0342	PF13495	Phage integrase, N-terminal SAM-like domain
YPZ3_0343	PF00440	Bacterial regulatory proteins, tetR family
YPZ3_0344	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPZ3_0344	PF13247	4Fe-4S dicluster domain
YPZ3_0344	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
YPZ3_0345	PF12800	4Fe-4S binding domain
YPZ3_0345	PF13187	4Fe-4S dicluster domain
YPZ3_0346	PF00384	Molybdopterin oxidoreductase
YPZ3_0346	PF01568	Molydopterin dinucleotide binding domain
YPZ3_0346	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPZ3_0347	PF02683	YPZ3_0347
YPZ3_0347	PF11412	Disulphide bond corrector protein DsbC
YPZ3_0347	PF13899	Thioredoxin-like
YPZ3_0348	PF03091	CutA1 divalent ion tolerance protein
YPZ3_0349	PF03605	YPZ3_0349
YPZ3_0350	PF00206	Lyase
YPZ3_0350	PF10415	Fumarase C C-terminus
YPZ3_0351	PF04186	YPZ3_0351
YPZ3_0352	PF00118	TCP-1/cpn60 chaperonin family
YPZ3_0353	PF13698	YPZ3_0353
YPZ3_0354	PF04055	Radical SAM superfamily
YPZ3_0354	PF13353	4Fe-4S single cluster domain
YPZ3_0355	PF01132	Elongation factor P (EF-P) OB domain
YPZ3_0355	PF08207	Elongation factor P (EF-P) KOW-like domain
YPZ3_0355	PF09285	Elongation factor P, C-terminal
YPZ3_0356	PF00893	Small Multidrug Resistance protein
YPZ3_0357	PF02313	Fumarate reductase subunit D
YPZ3_0358	PF02300	Fumarate reductase subunit C
YPZ3_0359	PF13085	2Fe-2S iron-sulfur cluster binding domain
YPZ3_0359	PF13183	4Fe-4S dicluster domain
YPZ3_0360	PF00890	FAD binding domain
YPZ3_0360	PF02910	Fumarate reductase flavoprotein C-term
YPZ3_0361	PF00152	tRNA synthetases class II (D, K and N)
YPZ3_0362	PF00924	Mechanosensitive ion channel
YPZ3_0362	PF12794	YPZ3_0362
YPZ3_0362	PF12795	YPZ3_0362
YPZ3_0363	PF02666	YPZ3_0363
YPZ3_0364	PF03193	Protein of unknown function, DUF258
YPZ3_0365	PF00929	Exonuclease
YPZ3_0366	PF08331	YPZ3_0366
YPZ3_0366	PF13484	YPZ3_0366
YPZ3_0367	PF01256	Carbohydrate kinase
YPZ3_0367	PF03853	YjeF-related protein N-terminus
YPZ3_0368	PF02367	Uncharacterised P-loop hydrolase UPF0079
YPZ3_0369	PF01476	LysM domain
YPZ3_0369	PF01520	N-acetylmuramoyl-L-alanine amidase
YPZ3_0369	PF11741	AMIN domain
YPZ3_0370	PF01119	DNA mismatch repair protein, C-terminal domain
YPZ3_0370	PF08676	MutL C terminal dimerisation domain
YPZ3_0370	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_0371	PF01715	IPP transferase
YPZ3_0372	PF17209	YPZ3_0372
YPZ3_0373	PF01926	50S ribosome-binding GTPase
YPZ3_0373	PF13167	YPZ3_0373
YPZ3_0373	PF16360	YPZ3_0373
YPZ3_0374	PF01145	SPFH domain / Band 7 family
YPZ3_0374	PF12221	YPZ3_0374
YPZ3_0375	PF01145	SPFH domain / Band 7 family
YPZ3_0376	PF00709	Adenylosuccinate synthetase
YPZ3_0377	PF02082	Transcriptional regulator
YPZ3_0378	PF00575	S1 RNA binding domain
YPZ3_0378	PF00773	RNB domain
YPZ3_0378	PF08206	Ribonuclease B OB domain
YPZ3_0378	PF08461	Ribonuclease R winged-helix domain
YPZ3_0379	PF00588	SpoU rRNA Methylase family
YPZ3_0379	PF08032	RNA 2'-O ribose methyltransferase substrate binding
YPZ3_0380	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
YPZ3_0380	PF02770	Acyl-CoA dehydrogenase, middle domain
YPZ3_0381	PF07338	Protein of unknown function (DUF1471)
YPZ3_0382	PF01695	IstB-like ATP binding protein
YPZ3_0383	PF00665	Integrase core domain
YPZ3_0383	PF02796	Helix-turn-helix domain of resolvase
YPZ3_0384	PF07728	AAA domain (dynein-related subfamily)
YPZ3_0385	PF10117	YPZ3_0385
YPZ3_0386	PF01555	DNA methylase
YPZ3_0387	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_0389	PF13558	Putative exonuclease SbcCD, C subunit
YPZ3_0390	PF09983	YPZ3_0390
YPZ3_0390	PF11795	YPZ3_0390
YPZ3_0391	PF01435	Peptidase family M48
YPZ3_0392	PF05987	YPZ3_0392
YPZ3_0394	PF12833	Helix-turn-helix domain
YPZ3_0395	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPZ3_0396	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPZ3_0397	PF02378	Phosphotransferase system, EIIC
YPZ3_0398	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPZ3_0398	PF00381	PTS HPr component phosphorylation site
YPZ3_0398	PF00391	PEP-utilising enzyme, mobile domain
YPZ3_0398	PF02896	PEP-utilising enzyme, TIM barrel domain
YPZ3_0398	PF05524	PEP-utilising enzyme, N-terminal
YPZ3_0399	PF10696	YPZ3_0399
YPZ3_0400	PF01791	DeoC/LacD family aldolase
YPZ3_0401	PF13407	Periplasmic binding protein domain
YPZ3_0402	PF02653	YPZ3_0402
YPZ3_0403	PF02653	YPZ3_0403
YPZ3_0404	PF00005	ABC transporter
YPZ3_0406	PF04198	Putative sugar-binding domain
YPZ3_0407	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPZ3_0407	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPZ3_0408	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YPZ3_0409	PF04932	YPZ3_0409
YPZ3_0410	PF16576	YPZ3_0410
YPZ3_0411	PF00873	AcrB/AcrD/AcrF family
YPZ3_0412	PF01095	Pectinesterase
YPZ3_0413	PF00990	GGDEF domain
YPZ3_0414	PF07256	YPZ3_0414
YPZ3_0415	PF05175	Methyltransferase small domain
YPZ3_0415	PF08468	Methyltransferase small domain N-terminal
YPZ3_0416	PF03603	DNA polymerase III psi subunit
YPZ3_0417	PF00583	Acetyltransferase (GNAT) family
YPZ3_0418	PF00009	Elongation factor Tu GTP binding domain
YPZ3_0418	PF03144	Elongation factor Tu domain 2
YPZ3_0418	PF16658	YPZ3_0418
YPZ3_0419	PF04972	BON domain
YPZ3_0420	PF01734	Patatin-like phospholipase
YPZ3_0421	PF01026	TatD related DNase
YPZ3_0422	PF01773	Na+ dependent nucleoside transporter N-terminus
YPZ3_0422	PF07662	Na+ dependent nucleoside transporter C-terminus
YPZ3_0422	PF07670	Nucleoside recognition
YPZ3_0423	PF01791	DeoC/LacD family aldolase
YPZ3_0424	PF00591	Glycosyl transferase family, a/b domain
YPZ3_0424	PF02885	Glycosyl transferase family, helical bundle domain
YPZ3_0425	PF00591	Glycosyl transferase family, a/b domain
YPZ3_0425	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
YPZ3_0426	PF01676	Metalloenzyme superfamily
YPZ3_0427	PF01048	Phosphorylase superfamily
YPZ3_0428	PF10144	YPZ3_0428
YPZ3_0429	PF12710	haloacid dehalogenase-like hydrolase
YPZ3_0430	PF13481	AAA domain
YPZ3_0430	PF13541	Subunit ChlI of Mg-chelatase
YPZ3_0431	PF01381	Helix-turn-helix
YPZ3_0431	PF13521	AAA domain
YPZ3_0432	PF02661	Fic/DOC family
YPZ3_0432	PF13776	YPZ3_0432
YPZ3_0433	PF00005	ABC transporter
YPZ3_0433	PF12848	ABC transporter
YPZ3_0434	PF00005	ABC transporter
YPZ3_0435	PF00691	OmpA family
YPZ3_0436	PF00990	GGDEF domain
YPZ3_0436	PF17152	YPZ3_0436
YPZ3_0437	PF13689	YPZ3_0437
YPZ3_0438	PF00122	E1-E2 ATPase
YPZ3_0438	PF00689	Cation transporting ATPase, C-terminus
YPZ3_0438	PF00690	Cation transporter/ATPase, N-terminus
YPZ3_0438	PF00702	haloacid dehalogenase-like hydrolase
YPZ3_0439	PF01464	Transglycosylase SLT domain
YPZ3_0439	PF14718	Soluble lytic murein transglycosylase L domain
YPZ3_0440	PF01371	Trp repressor protein
YPZ3_0441	PF01931	Protein of unknown function DUF84
YPZ3_0442	PF00300	Histidine phosphatase superfamily (branch 1)
YPZ3_0443	PF06445	GyrI-like small molecule binding domain
YPZ3_0443	PF12833	Helix-turn-helix domain
YPZ3_0444	PF05981	YPZ3_0444
YPZ3_0445	PF00072	Response regulator receiver domain
YPZ3_0445	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_0446	PF00696	Amino acid kinase family
YPZ3_0446	PF00742	Homoserine dehydrogenase
YPZ3_0446	PF01842	ACT domain
YPZ3_0446	PF03447	Homoserine dehydrogenase, NAD binding domain
YPZ3_0446	PF13840	ACT domain
YPZ3_0447	PF00288	GHMP kinases N terminal domain
YPZ3_0447	PF08544	GHMP kinases C terminal
YPZ3_0448	PF00291	Pyridoxal-phosphate dependent enzyme
YPZ3_0448	PF14821	Threonine synthase N terminus
YPZ3_0449	PF03883	YPZ3_0449
YPZ3_0450	PF00923	Transaldolase
YPZ3_0451	PF00994	Probable molybdopterin binding domain
YPZ3_0452	PF07690	Major Facilitator Superfamily
YPZ3_0454	PF01184	YPZ3_0454
YPZ3_0455	PF00012	Hsp70 protein
YPZ3_0456	PF00226	DnaJ domain
YPZ3_0456	PF00684	DnaJ central domain
YPZ3_0456	PF01556	DnaJ C terminal domain
YPZ3_0457	PF06965	Na+/H+ antiporter 1
YPZ3_0458	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_0458	PF03466	LysR substrate binding domain
YPZ3_0459	PF06574	FAD synthetase
YPZ3_0460	PF01687	Riboflavin kinase
YPZ3_0461	PF00133	tRNA synthetases class I (I, L, M and V)
YPZ3_0461	PF06827	Zinc finger found in FPG and IleRS
YPZ3_0461	PF08264	Anticodon-binding domain of tRNA
YPZ3_0462	PF01252	YPZ3_0462
YPZ3_0463	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPZ3_0464	PF02401	LytB protein
YPZ3_0465	PF01797	Transposase IS200 like
YPZ3_0466	PF01113	Dihydrodipicolinate reductase, N-terminus
YPZ3_0466	PF05173	Dihydrodipicolinate reductase, C-terminus
YPZ3_0467	PF00117	Glutamine amidotransferase class-I
YPZ3_0467	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
YPZ3_0468	PF02142	MGS-like domain
YPZ3_0468	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
YPZ3_0468	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
YPZ3_0469	PF01810	YPZ3_0469
YPZ3_0470	PF06738	YPZ3_0470
YPZ3_0471	PF12821	YPZ3_0471
YPZ3_0472	PF00186	Dihydrofolate reductase
YPZ3_0473	PF01797	Transposase IS200 like
YPZ3_0474	PF12582	YPZ3_0474
YPZ3_0475	PF00149	Calcineurin-like phosphoesterase
YPZ3_0476	PF04379	Protein of unknown function (DUF525)
YPZ3_0477	PF00398	Ribosomal RNA adenine dimethylase
YPZ3_0478	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
YPZ3_0479	PF00639	PPIC-type PPIASE domain
YPZ3_0479	PF09312	SurA N-terminal domain
YPZ3_0480	PF03968	OstA-like protein
YPZ3_0480	PF04453	Organic solvent tolerance protein
YPZ3_0481	PF00226	DnaJ domain
YPZ3_0481	PF05099	Tellurite resistance protein TerB
YPZ3_0482	PF00849	RNA pseudouridylate synthase
YPZ3_0483	PF10074	YPZ3_0483
YPZ3_0484	PF06812	YPZ3_0484
YPZ3_0485	PF05591	YPZ3_0485
YPZ3_0486	PF05943	YPZ3_0486
YPZ3_0487	PF05638	Protein of unknown function (DUF796)
YPZ3_0488	PF04965	Gene 25-like lysozyme
YPZ3_0489	PF05947	YPZ3_0489
YPZ3_0490	PF06996	YPZ3_0490
YPZ3_0491	PF00004	ATPase family associated with various cellular activities (AAA)
YPZ3_0491	PF02861	Clp amino terminal domain
YPZ3_0491	PF07724	AAA domain (Cdc48 subfamily)
YPZ3_0492	PF05954	Phage late control gene D protein (GPD)
YPZ3_0493	PF09937	YPZ3_0493
YPZ3_0494	PF09937	YPZ3_0494
YPZ3_0494	PF13599	Pentapeptide repeats (9 copies)
YPZ3_0495	PF00805	Pentapeptide repeats (8 copies)
YPZ3_0495	PF13599	Pentapeptide repeats (9 copies)
YPZ3_0496	PF12059	YPZ3_0496
YPZ3_0497	PF12790	Type VI secretion lipoprotein
YPZ3_0498	PF05936	YPZ3_0498
YPZ3_0499	PF00691	OmpA family
YPZ3_0499	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPZ3_0500	PF06744	YPZ3_0500
YPZ3_0500	PF06761	YPZ3_0500
YPZ3_0500	PF14331	YPZ3_0500
YPZ3_0502	PF00176	SNF2 family N-terminal domain
YPZ3_0502	PF00271	Helicase conserved C-terminal domain
YPZ3_0502	PF12137	RNA polymerase recycling family C-terminal
YPZ3_0503	PF00136	DNA polymerase family B
YPZ3_0503	PF03104	DNA polymerase family B, exonuclease domain
YPZ3_0504	PF09335	YPZ3_0504
YPZ3_0505	PF00005	ABC transporter
YPZ3_0506	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_0507	PF13343	Bacterial extracellular solute-binding protein
YPZ3_0508	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPZ3_0508	PF12793	YPZ3_0508
YPZ3_0509	PF07690	Major Facilitator Superfamily
YPZ3_0510	PF01695	IstB-like ATP binding protein
YPZ3_0511	PF00665	Integrase core domain
YPZ3_0511	PF02796	Helix-turn-helix domain of resolvase
YPZ3_0512	PF00694	Aconitase C-terminal domain
YPZ3_0513	PF00330	Aconitase family (aconitate hydratase)
YPZ3_0514	PF00180	Isocitrate/isopropylmalate dehydrogenase
YPZ3_0515	PF00682	HMGL-like
YPZ3_0515	PF08502	LeuA allosteric (dimerisation) domain
YPZ3_0516	PF01797	Transposase IS200 like
YPZ3_0517	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_0517	PF03466	LysR substrate binding domain
YPZ3_0518	PF00501	AMP-binding enzyme
YPZ3_0519	PF00205	Thiamine pyrophosphate enzyme, central domain
YPZ3_0519	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPZ3_0519	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPZ3_0520	PF01842	ACT domain
YPZ3_0520	PF10369	Small subunit of acetolactate synthase
YPZ3_0521	PF01797	Transposase IS200 like
YPZ3_0522	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_0522	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPZ3_0523	PF06610	YPZ3_0523
YPZ3_0524	PF02381	MraZ protein
YPZ3_0525	PF01795	MraW methylase family
YPZ3_0526	PF04999	YPZ3_0526
YPZ3_0527	PF00905	Penicillin binding protein transpeptidase domain
YPZ3_0527	PF03717	Penicillin-binding Protein dimerisation domain
YPZ3_0528	PF01225	Mur ligase family, catalytic domain
YPZ3_0528	PF02875	Mur ligase family, glutamate ligase domain
YPZ3_0528	PF08245	Mur ligase middle domain
YPZ3_0529	PF01225	Mur ligase family, catalytic domain
YPZ3_0529	PF02875	Mur ligase family, glutamate ligase domain
YPZ3_0529	PF08245	Mur ligase middle domain
YPZ3_0530	PF00953	Glycosyl transferase family 4
YPZ3_0530	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
YPZ3_0531	PF02875	Mur ligase family, glutamate ligase domain
YPZ3_0531	PF08245	Mur ligase middle domain
YPZ3_0532	PF01098	YPZ3_0532
YPZ3_0533	PF03033	Glycosyltransferase family 28 N-terminal domain
YPZ3_0533	PF04101	Glycosyltransferase family 28 C-terminal domain
YPZ3_0534	PF01225	Mur ligase family, catalytic domain
YPZ3_0534	PF02875	Mur ligase family, glutamate ligase domain
YPZ3_0534	PF08245	Mur ligase middle domain
YPZ3_0535	PF01820	D-ala D-ala ligase N-terminus
YPZ3_0535	PF07478	D-ala D-ala ligase C-terminus
YPZ3_0536	PF03799	Cell division protein FtsQ
YPZ3_0536	PF08478	POTRA domain, FtsQ-type
YPZ3_0537	PF02491	SHS2 domain inserted in FTSA
YPZ3_0537	PF14450	Cell division protein FtsA
YPZ3_0538	PF00091	Tubulin/FtsZ family, GTPase domain
YPZ3_0538	PF12327	FtsZ family, C-terminal domain
YPZ3_0539	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
YPZ3_0540	PF05258	YPZ3_0540
YPZ3_0541	PF06558	YPZ3_0541
YPZ3_0542	PF01043	SecA preprotein cross-linking domain
YPZ3_0542	PF02810	SEC-C motif
YPZ3_0542	PF07516	SecA Wing and Scaffold domain
YPZ3_0542	PF07517	SecA DEAD-like domain
YPZ3_0543	PF00293	NUDIX domain
YPZ3_0544	PF01695	IstB-like ATP binding protein
YPZ3_0545	PF00665	Integrase core domain
YPZ3_0545	PF02796	Helix-turn-helix domain of resolvase
YPZ3_0546	PF07681	YPZ3_0546
YPZ3_0547	PF07332	YPZ3_0547
YPZ3_0548	PF05957	YPZ3_0548
YPZ3_0549	PF06476	YPZ3_0549
YPZ3_0550	PF13721	SecD export protein N-terminal TM region
YPZ3_0551	PF09335	YPZ3_0551
YPZ3_0553	PF00392	Bacterial regulatory proteins, gntR family
YPZ3_0553	PF07729	FCD domain
YPZ3_0554	PF07690	Major Facilitator Superfamily
YPZ3_0555	PF02614	Glucuronate isomerase
YPZ3_0556	PF01232	Mannitol dehydrogenase Rossmann domain
YPZ3_0556	PF08125	Mannitol dehydrogenase C-terminal domain
YPZ3_0557	PF04295	YPZ3_0557
YPZ3_0557	PF08666	SAF domain
YPZ3_0558	PF10688	YPZ3_0558
YPZ3_0559	PF01797	Transposase IS200 like
YPZ3_0560	PF00375	Sodium:dicarboxylate symporter family
YPZ3_0561	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPZ3_0562	PF01863	Protein of unknown function DUF45
YPZ3_0563	PF03212	Pertactin
YPZ3_0563	PF03797	Autotransporter beta-domain
YPZ3_0564	PF05175	Methyltransferase small domain
YPZ3_0565	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
YPZ3_0565	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPZ3_0566	PF03729	YPZ3_0566
YPZ3_0567	PF00069	Protein kinase domain
YPZ3_0568	PF13672	Protein phosphatase 2C
YPZ3_0569	PF00092	von Willebrand factor type A domain
YPZ3_0569	PF15616	YPZ3_0569
YPZ3_0570	PF00092	von Willebrand factor type A domain
YPZ3_0571	PF02342	TerD domain
YPZ3_0572	PF00092	von Willebrand factor type A domain
YPZ3_0573	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPZ3_0573	PF08479	POTRA domain, ShlB-type
YPZ3_0573	PF17287	YPZ3_0573
YPZ3_0574	PF04829	YPZ3_0574
YPZ3_0574	PF05860	haemagglutination activity domain
YPZ3_0574	PF13018	YPZ3_0574
YPZ3_0574	PF13332	YPZ3_0574
YPZ3_0576	PF03797	Autotransporter beta-domain
YPZ3_0577	PF13557	YPZ3_0577
YPZ3_0579	PF10091	Putative glucoamylase
YPZ3_0580	PF00005	ABC transporter
YPZ3_0580	PF08402	TOBE domain
YPZ3_0582	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_0582	PF13377	Periplasmic binding protein-like domain
YPZ3_0583	PF01547	Bacterial extracellular solute-binding protein
YPZ3_0584	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_0585	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_0587	PF00933	Glycosyl hydrolase family 3 N terminal domain
YPZ3_0587	PF01915	Glycosyl hydrolase family 3 C-terminal domain
YPZ3_0587	PF14310	Fibronectin type III-like domain
YPZ3_0588	PF02321	Outer membrane efflux protein
YPZ3_0589	PF04632	YPZ3_0589
YPZ3_0590	PF13437	HlyD family secretion protein
YPZ3_0590	PF13533	Biotin-lipoyl like
YPZ3_0591	PF00155	Aminotransferase class I and II
YPZ3_0592	PF03553	YPZ3_0592
YPZ3_0593	PF10604	Polyketide cyclase / dehydrase and lipid transport
YPZ3_0594	PF08348	YPZ3_0594
YPZ3_0595	PF01042	Endoribonuclease L-PSP
YPZ3_0596	PF01042	Endoribonuclease L-PSP
YPZ3_0597	PF08803	Putative mono-oxygenase ydhR
YPZ3_0599	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_0599	PF03466	LysR substrate binding domain
YPZ3_0604	PF00140	Sigma-70 factor, region 1
YPZ3_0604	PF03979	Sigma-70 factor, region 1
YPZ3_0604	PF04539	Sigma-70 region 3
YPZ3_0604	PF04542	Sigma-70 region 2
YPZ3_0604	PF04545	Sigma-70, region 4
YPZ3_0604	PF04546	Sigma-70, non-essential region
YPZ3_0605	PF08275	DNA primase catalytic core, N-terminal domain
YPZ3_0605	PF08278	DNA primase DnaG DnaB-binding
YPZ3_0605	PF10410	DnaB-helicase binding domain of primase
YPZ3_0605	PF13155	Toprim-like
YPZ3_0606	PF00814	Glycoprotease family
YPZ3_0607	PF02660	YPZ3_0607
YPZ3_0608	PF02152	Dihydroneopterin aldolase
YPZ3_0609	PF02673	YPZ3_0609
YPZ3_0610	PF01743	Poly A polymerase head domain
YPZ3_0610	PF01966	HD domain
YPZ3_0610	PF12627	Probable RNA and SrmB- binding site of polymerase A
YPZ3_0611	PF08239	Bacterial SH3 domain
YPZ3_0612	PF01928	CYTH domain
YPZ3_0613	PF03710	Glutamate-ammonia ligase adenylyltransferase
YPZ3_0613	PF08335	GlnD PII-uridylyltransferase
YPZ3_0614	PF00294	pfkB family carbohydrate kinase
YPZ3_0614	PF01467	Cytidylyltransferase
YPZ3_0615	PF13520	Amino acid permease
YPZ3_0616	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
YPZ3_0617	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
YPZ3_0618	PF03738	Glutathionylspermidine synthase preATP-grasp
YPZ3_0619	PF06693	YPZ3_0619
YPZ3_0620	PF02321	Outer membrane efflux protein
YPZ3_0621	PF00293	NUDIX domain
YPZ3_0622	PF06853	YPZ3_0622
YPZ3_0623	PF00149	Calcineurin-like phosphoesterase
YPZ3_0624	PF05728	Uncharacterised protein family (UPF0227)
YPZ3_0625	PF00204	DNA gyrase B
YPZ3_0625	PF00986	DNA gyrase B subunit, carboxyl terminus
YPZ3_0625	PF01751	Toprim domain
YPZ3_0625	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_0626	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_0626	PF03466	LysR substrate binding domain
YPZ3_0627	PF02525	Flavodoxin-like fold
YPZ3_0628	PF00521	DNA gyrase/topoisomerase IV, subunit A
YPZ3_0628	PF03989	DNA gyrase C-terminal domain, beta-propeller
YPZ3_0629	PF01553	Acyltransferase
YPZ3_0630	PF07731	Multicopper oxidase
YPZ3_0630	PF07732	Multicopper oxidase
YPZ3_0631	PF04055	Radical SAM superfamily
YPZ3_0631	PF08497	YPZ3_0631
YPZ3_0632	PF11842	YPZ3_0632
YPZ3_0633	PF00248	Aldo/keto reductase family
YPZ3_0634	PF00465	Iron-containing alcohol dehydrogenase
YPZ3_0635	PF06719	YPZ3_0635
YPZ3_0635	PF12833	Helix-turn-helix domain
YPZ3_0636	PF09335	YPZ3_0636
YPZ3_0637	PF01053	Cys/Met metabolism PLP-dependent enzyme
YPZ3_0638	PF01618	YPZ3_0638
YPZ3_0639	PF02472	Biopolymer transport protein ExbD/TolR
YPZ3_0641	PF16964	YPZ3_0641
YPZ3_0642	PF07811	YPZ3_0642
YPZ3_0644	PF00482	Type II secretion system (T2SS), protein F
YPZ3_0645	PF00482	Type II secretion system (T2SS), protein F
YPZ3_0646	PF00437	Type II/IV secretion system protein
YPZ3_0648	PF00263	YPZ3_0648
YPZ3_0649	PF13629	YPZ3_0649
YPZ3_0651	PF01478	Type IV leader peptidase family
YPZ3_0652	PF01797	Transposase IS200 like
YPZ3_0653	PF01797	Transposase IS200 like
YPZ3_0654	PF00577	Outer membrane usher protein
YPZ3_0654	PF13953	PapC C-terminal domain
YPZ3_0654	PF13954	PapC N-terminal domain
YPZ3_0655	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPZ3_0655	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPZ3_0656	PF00419	Fimbrial protein
YPZ3_0657	PF01497	Periplasmic binding protein
YPZ3_0659	PF00771	FHIPEP family
YPZ3_0660	PF00771	FHIPEP family
YPZ3_0661	PF01312	FlhB HrpN YscU SpaS Family
YPZ3_0662	PF01311	YPZ3_0662
YPZ3_0663	PF00813	YPZ3_0663
YPZ3_0664	PF01052	Surface presentation of antigens (SPOA)
YPZ3_0665	PF01052	Surface presentation of antigens (SPOA)
YPZ3_0666	PF00158	Sigma-54 interaction domain
YPZ3_0666	PF02954	Bacterial regulatory protein, Fis family
YPZ3_0667	PF02049	YPZ3_0667
YPZ3_0668	PF01514	Secretory protein of YscJ/FliF family
YPZ3_0668	PF08345	YPZ3_0668
YPZ3_0669	PF01706	FliG C-terminal domain
YPZ3_0669	PF14841	FliG middle domain
YPZ3_0669	PF14842	FliG N-terminal domain
YPZ3_0670	PF02108	YPZ3_0670
YPZ3_0670	PF09811	YPZ3_0670
YPZ3_0671	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPZ3_0672	PF02050	Flagellar FliJ protein
YPZ3_0673	PF05130	FlgN protein
YPZ3_0674	PF13144	SAF-like
YPZ3_0675	PF00460	Flagella basal body rod protein
YPZ3_0676	PF00460	Flagella basal body rod protein
YPZ3_0676	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPZ3_0677	PF03963	YPZ3_0677
YPZ3_0677	PF13860	FlgD Ig-like domain
YPZ3_0677	PF13861	FlgD Tudor-like domain
YPZ3_0678	PF00460	Flagella basal body rod protein
YPZ3_0678	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPZ3_0678	PF07559	Flagellar basal body protein FlaE
YPZ3_0679	PF01797	Transposase IS200 like
YPZ3_0680	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPZ3_0681	PF00460	Flagella basal body rod protein
YPZ3_0681	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPZ3_0682	PF02107	YPZ3_0682
YPZ3_0683	PF02119	YPZ3_0683
YPZ3_0684	PF00460	Flagella basal body rod protein
YPZ3_0684	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPZ3_0685	PF00669	Bacterial flagellin N-terminal helical region
YPZ3_0688	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_0689	PF00669	Bacterial flagellin N-terminal helical region
YPZ3_0689	PF00700	Bacterial flagellin C-terminal helical region
YPZ3_0690	PF00669	Bacterial flagellin N-terminal helical region
YPZ3_0690	PF00700	Bacterial flagellin C-terminal helical region
YPZ3_0691	PF00669	Bacterial flagellin N-terminal helical region
YPZ3_0691	PF00700	Bacterial flagellin C-terminal helical region
YPZ3_0692	PF02465	YPZ3_0692
YPZ3_0692	PF07195	YPZ3_0692
YPZ3_0692	PF07196	Flagellin hook IN motif
YPZ3_0693	PF02561	Flagellar protein FliS
YPZ3_0695	PF02120	Flagellar hook-length control protein FliK
YPZ3_0696	PF03748	YPZ3_0696
YPZ3_0697	PF04539	Sigma-70 region 3
YPZ3_0697	PF04542	Sigma-70 region 2
YPZ3_0697	PF04545	Sigma-70, region 4
YPZ3_0698	PF01618	YPZ3_0698
YPZ3_0699	PF00691	OmpA family
YPZ3_0699	PF13677	YPZ3_0699
YPZ3_0702	PF13518	Helix-turn-helix domain
YPZ3_0703	PF00665	Integrase core domain
YPZ3_0703	PF13276	YPZ3_0703
YPZ3_0704	PF00563	EAL domain
YPZ3_0704	PF00989	PAS fold
YPZ3_0704	PF00990	GGDEF domain
YPZ3_0704	PF05228	YPZ3_0704
YPZ3_0705	PF16576	YPZ3_0705
YPZ3_0706	PF00873	AcrB/AcrD/AcrF family
YPZ3_0707	PF07906	YPZ3_0707
YPZ3_0709	PF13018	YPZ3_0709
YPZ3_0710	PF12468	Type III secretion system leucine rich repeat protein
YPZ3_0710	PF14496	C-terminal novel E3 ligase, LRR-interacting
YPZ3_0711	PF12468	Type III secretion system leucine rich repeat protein
YPZ3_0712	PF12468	Type III secretion system leucine rich repeat protein
YPZ3_0712	PF14496	C-terminal novel E3 ligase, LRR-interacting
YPZ3_0713	PF03806	YPZ3_0713
YPZ3_0714	PF01546	Peptidase family M20/M25/M40
YPZ3_0714	PF07687	Peptidase dimerisation domain
YPZ3_0715	PF00593	TonB dependent receptor
YPZ3_0715	PF07715	TonB-dependent Receptor Plug Domain
YPZ3_0716	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPZ3_0716	PF00501	AMP-binding enzyme
YPZ3_0716	PF00550	Phosphopantetheine attachment site
YPZ3_0717	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPZ3_0718	PF00665	Integrase core domain
YPZ3_0718	PF02796	Helix-turn-helix domain of resolvase
YPZ3_0719	PF01695	IstB-like ATP binding protein
YPZ3_0720	PF00501	AMP-binding enzyme
YPZ3_0720	PF00550	Phosphopantetheine attachment site
YPZ3_0720	PF00668	Condensation domain
YPZ3_0721	PF00501	AMP-binding enzyme
YPZ3_0721	PF00550	Phosphopantetheine attachment site
YPZ3_0722	PF00501	AMP-binding enzyme
YPZ3_0722	PF00550	Phosphopantetheine attachment site
YPZ3_0722	PF00668	Condensation domain
YPZ3_0722	PF00975	Thioesterase domain
YPZ3_0722	PF08242	Methyltransferase domain
YPZ3_0723	PF01370	NAD dependent epimerase/dehydratase family
YPZ3_0724	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPZ3_0725	PF00975	Thioesterase domain
YPZ3_0726	PF07690	Major Facilitator Superfamily
YPZ3_0727	PF00005	ABC transporter
YPZ3_0727	PF00664	ABC transporter transmembrane region
YPZ3_0728	PF00005	ABC transporter
YPZ3_0728	PF00664	ABC transporter transmembrane region
YPZ3_0731	PF02447	YPZ3_0731
YPZ3_0733	PF03797	Autotransporter beta-domain
YPZ3_0734	PF03797	Autotransporter beta-domain
YPZ3_0735	PF05954	Phage late control gene D protein (GPD)
YPZ3_0735	PF06715	Gp5 C-terminal repeat (3 copies)
YPZ3_0737	PF03527	YPZ3_0737
YPZ3_0737	PF05593	YPZ3_0737
YPZ3_0739	PF00939	Sodium:sulfate symporter transmembrane region
YPZ3_0740	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_0740	PF13377	Periplasmic binding protein-like domain
YPZ3_0741	PF00665	Integrase core domain
YPZ3_0741	PF13276	YPZ3_0741
YPZ3_0742	PF13518	Helix-turn-helix domain
YPZ3_0743	PF13347	MFS/sugar transport protein
YPZ3_0744	PF00593	TonB dependent receptor
YPZ3_0744	PF07715	TonB-dependent Receptor Plug Domain
YPZ3_0745	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
YPZ3_0746	PF04183	IucA / IucC family
YPZ3_0746	PF06276	Ferric iron reductase FhuF-like transporter
YPZ3_0747	PF13523	Acetyltransferase (GNAT) domain
YPZ3_0748	PF04183	IucA / IucC family
YPZ3_0748	PF06276	Ferric iron reductase FhuF-like transporter
YPZ3_0749	PF04183	IucA / IucC family
YPZ3_0750	PF07690	Major Facilitator Superfamily
YPZ3_0751	PF00775	Dioxygenase
YPZ3_0752	PF10503	Esterase PHB depolymerase
YPZ3_0753	PF00196	Bacterial regulatory proteins, luxR family
YPZ3_0753	PF03472	Autoinducer binding domain
YPZ3_0754	PF00765	Autoinducer synthetase
YPZ3_0755	PF02517	CAAX protease self-immunity
YPZ3_0756	PF05591	YPZ3_0756
YPZ3_0757	PF05943	YPZ3_0757
YPZ3_0758	PF05936	YPZ3_0758
YPZ3_0759	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPZ3_0760	PF00691	OmpA family
YPZ3_0761	PF05638	Protein of unknown function (DUF796)
YPZ3_0762	PF00004	ATPase family associated with various cellular activities (AAA)
YPZ3_0762	PF07724	AAA domain (Cdc48 subfamily)
YPZ3_0762	PF10431	C-terminal, D2-small domain, of ClpB protein
YPZ3_0763	PF05954	Phage late control gene D protein (GPD)
YPZ3_0763	PF10106	YPZ3_0763
YPZ3_0763	PF13296	YPZ3_0763
YPZ3_0764	PF01551	Peptidase family M23
YPZ3_0766	PF03400	YPZ3_0766
YPZ3_0767	PF10106	YPZ3_0767
YPZ3_0768	PF01276	Orn/Lys/Arg decarboxylase, major domain
YPZ3_0768	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
YPZ3_0768	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
YPZ3_0769	PF13407	Periplasmic binding protein domain
YPZ3_0770	PF00005	ABC transporter
YPZ3_0771	PF02653	YPZ3_0771
YPZ3_0772	PF00593	TonB dependent receptor
YPZ3_0772	PF07715	TonB-dependent Receptor Plug Domain
YPZ3_0773	PF01497	Periplasmic binding protein
YPZ3_0774	PF01464	Transglycosylase SLT domain
YPZ3_0774	PF11873	Domain of unknown function (DUF3393)
YPZ3_0775	PF00633	Helix-hairpin-helix motif
YPZ3_0775	PF00730	HhH-GPD superfamily base excision DNA repair protein
YPZ3_0775	PF10576	Iron-sulfur binding domain of endonuclease III
YPZ3_0775	PF14815	NUDIX domain
YPZ3_0776	PF02390	Putative methyltransferase
YPZ3_0777	PF04320	YPZ3_0777
YPZ3_0778	PF04960	Glutaminase
YPZ3_0779	PF11101	YPZ3_0779
YPZ3_0780	PF11713	Peptidase C80 family
YPZ3_0781	PF04055	Radical SAM superfamily
YPZ3_0781	PF06969	HemN C-terminal domain
YPZ3_0782	PF01725	Ham1 family
YPZ3_0783	PF02594	Uncharacterised ACR, YggU family COG1872
YPZ3_0784	PF02325	YPZ3_0784
YPZ3_0785	PF03807	NADP oxidoreductase coenzyme F420-dependent
YPZ3_0785	PF14748	Pyrroline-5-carboxylate reductase dimerisation
YPZ3_0786	PF01168	Alanine racemase, N-terminal domain
YPZ3_0787	PF00437	Type II/IV secretion system protein
YPZ3_0788	PF04371	Porphyromonas-type peptidyl-arginine deiminase
YPZ3_0789	PF00795	Carbon-nitrogen hydrolase
YPZ3_0790	PF03652	Uncharacterised protein family (UPF0081)
YPZ3_0791	PF02622	Uncharacterized ACR, COG1678
YPZ3_0792	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
YPZ3_0792	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
YPZ3_0793	PF04452	RNA methyltransferase
YPZ3_0794	PF04231	Endonuclease I
YPZ3_0795	PF10263	YPZ3_0795
YPZ3_0795	PF17283	YPZ3_0795
YPZ3_0796	PF00438	S-adenosylmethionine synthetase, N-terminal domain
YPZ3_0796	PF02772	S-adenosylmethionine synthetase, central domain
YPZ3_0796	PF02773	S-adenosylmethionine synthetase, C-terminal domain
YPZ3_0797	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
YPZ3_0798	PF00355	Rieske [2Fe-2S] domain
YPZ3_0799	PF01435	Peptidase family M48
YPZ3_0800	PF00456	Transketolase, thiamine diphosphate binding domain
YPZ3_0800	PF02779	Transketolase, pyrimidine binding domain
YPZ3_0800	PF02780	Transketolase, C-terminal domain
YPZ3_0801	PF01797	Transposase IS200 like
YPZ3_0802	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
YPZ3_0802	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
YPZ3_0803	PF00162	Phosphoglycerate kinase
YPZ3_0804	PF01116	Fructose-bisphosphate aldolase class-II
YPZ3_0805	PF00924	Mechanosensitive ion channel
YPZ3_0805	PF05552	Conserved TM helix
YPZ3_0806	PF01810	YPZ3_0806
YPZ3_0807	PF04402	Protein of unknown function (DUF541)
YPZ3_0808	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_0808	PF03466	LysR substrate binding domain
YPZ3_0809	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
YPZ3_0810	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPZ3_0810	PF01842	ACT domain
YPZ3_0810	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPZ3_0811	PF01812	5-formyltetrahydrofolate cyclo-ligase family
YPZ3_0812	PF05164	Cell division protein ZapA
YPZ3_0813	PF03695	Uncharacterised protein family (UPF0149)
YPZ3_0814	PF00557	Metallopeptidase family M24
YPZ3_0814	PF05195	Aminopeptidase P, N-terminal domain
YPZ3_0815	PF01494	FAD binding domain
YPZ3_0816	PF01494	FAD binding domain
YPZ3_0817	PF01571	Aminomethyltransferase folate-binding domain
YPZ3_0817	PF08669	Glycine cleavage T-protein C-terminal barrel domain
YPZ3_0818	PF01597	Glycine cleavage H-protein
YPZ3_0819	PF02347	Glycine cleavage system P-protein
YPZ3_0820	PF13924	YPZ3_0820
YPZ3_0821	PF03895	YadA-like C-terminal region
YPZ3_0821	PF05658	Head domain of trimeric autotransporter adhesin
YPZ3_0821	PF05662	Coiled stalk of trimeric autotransporter adhesin
YPZ3_0823	PF03006	YPZ3_0823
YPZ3_0824	PF09933	YPZ3_0824
YPZ3_0825	PF01571	Aminomethyltransferase folate-binding domain
YPZ3_0826	PF07254	YPZ3_0826
YPZ3_0827	PF00072	Response regulator receiver domain
YPZ3_0827	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_0828	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_0828	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_0828	PF14827	Sensory domain of two-component sensor kinase
YPZ3_0829	PF06123	YPZ3_0829
YPZ3_0830	PF00258	Flavodoxin
YPZ3_0831	PF00589	Phage integrase family
YPZ3_0831	PF02899	Phage integrase, N-terminal SAM-like domain
YPZ3_0832	PF10411	Disulfide bond isomerase protein N-terminus
YPZ3_0832	PF13098	Thioredoxin-like domain
YPZ3_0833	PF01368	DHH family
YPZ3_0833	PF02272	DHHA1 domain
YPZ3_0834	PF00472	RF-1 domain
YPZ3_0834	PF03462	PCRF domain
YPZ3_0835	PF00152	tRNA synthetases class II (D, K and N)
YPZ3_0835	PF01336	OB-fold nucleic acid binding domain
YPZ3_0836	PF00589	Phage integrase family
YPZ3_0836	PF13356	Domain of unknown function (DUF4102)
YPZ3_0837	PF01381	Helix-turn-helix
YPZ3_0838	PF15731	YPZ3_0838
YPZ3_0839	PF03288	Poxvirus D5 protein-like
YPZ3_0839	PF08273	Zinc-binding domain of primase-helicase
YPZ3_0839	PF08706	YPZ3_0839
YPZ3_0839	PF13362	Toprim domain
YPZ3_0840	PF05973	YPZ3_0840
YPZ3_0843	PF02661	Fic/DOC family
YPZ3_0844	PF05488	PAAR motif
YPZ3_0844	PF06958	S-type Pyocin
YPZ3_0846	PF11340	YPZ3_0846
YPZ3_0848	PF05488	PAAR motif
YPZ3_0849	PF12977	Domain of Unknown Function with PDB structure (DUF3861)
YPZ3_0850	PF03551	Transcriptional regulator PadR-like family
YPZ3_0851	PF05708	Orthopoxvirus protein of unknown function (DUF830)
YPZ3_0853	PF13407	Periplasmic binding protein domain
YPZ3_0854	PF02653	YPZ3_0854
YPZ3_0855	PF00005	ABC transporter
YPZ3_0856	PF00005	ABC transporter
YPZ3_0856	PF08402	TOBE domain
YPZ3_0857	PF13416	Bacterial extracellular solute-binding protein
YPZ3_0858	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_0859	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_0860	PF07745	Glycosyl hydrolase family 53
YPZ3_0861	PF02449	Beta-galactosidase
YPZ3_0861	PF08532	Beta-galactosidase trimerisation domain
YPZ3_0861	PF08533	Beta-galactosidase C-terminal domain
YPZ3_0862	PF00367	phosphotransferase system, EIIB
YPZ3_0863	PF02264	LamB porin
YPZ3_0864	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_0864	PF13377	Periplasmic binding protein-like domain
YPZ3_0865	PF01055	Glycosyl hydrolases family 31
YPZ3_0865	PF13802	Galactose mutarotase-like
YPZ3_0865	PF17137	YPZ3_0865
YPZ3_0866	PF07690	Major Facilitator Superfamily
YPZ3_0867	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_0867	PF13377	Periplasmic binding protein-like domain
YPZ3_0868	PF01965	DJ-1/PfpI family
YPZ3_0869	PF01116	Fructose-bisphosphate aldolase class-II
YPZ3_0870	PF10022	YPZ3_0870
YPZ3_0871	PF00884	Sulfatase
YPZ3_0872	PF04055	Radical SAM superfamily
YPZ3_0872	PF13186	Iron-sulfur cluster-binding domain
YPZ3_0873	PF07470	Glycosyl Hydrolase Family 88
YPZ3_0874	PF13561	Enoyl-(Acyl carrier protein) reductase
YPZ3_0875	PF01979	Amidohydrolase family
YPZ3_0876	PF03610	PTS system fructose IIA component
YPZ3_0877	PF03613	YPZ3_0877
YPZ3_0878	PF03609	YPZ3_0878
YPZ3_0879	PF03830	PTS system sorbose subfamily IIB component
YPZ3_0880	PF01380	SIS domain
YPZ3_0881	PF08013	Tagatose 6 phosphate kinase
YPZ3_0882	PF00455	YPZ3_0882
YPZ3_0882	PF08220	DeoR-like helix-turn-helix domain
YPZ3_0883	PF00884	Sulfatase
YPZ3_0884	PF01797	Transposase IS200 like
YPZ3_0885	PF00665	Integrase core domain
YPZ3_0885	PF02796	Helix-turn-helix domain of resolvase
YPZ3_0886	PF01695	IstB-like ATP binding protein
YPZ3_0887	PF02278	Polysaccharide lyase family 8, super-sandwich domain
YPZ3_0887	PF02884	Polysaccharide lyase family 8, C-terminal beta-sandwich domain
YPZ3_0887	PF09092	Lyase, N terminal
YPZ3_0887	PF09093	Lyase, catalytic
YPZ3_0888	PF03797	Autotransporter beta-domain
YPZ3_0889	PF16946	YPZ3_0889
YPZ3_0890	PF00484	Carbonic anhydrase
YPZ3_0892	PF11356	Type IV pilus biogenesis
YPZ3_0893	PF00263	YPZ3_0893
YPZ3_0893	PF03958	Bacterial type II/III secretion system short domain
YPZ3_0894	PF00437	Type II/IV secretion system protein
YPZ3_0895	PF00482	Type II secretion system (T2SS), protein F
YPZ3_0896	PF07963	Prokaryotic N-terminal methylation motif
YPZ3_0896	PF08334	Type II secretion system (T2SS), protein G
YPZ3_0897	PF11612	Type II secretion system (T2SS), protein J
YPZ3_0898	PF03934	Type II secretion system (T2SS), protein K
YPZ3_0899	PF05134	Type II secretion system (T2SS), protein L
YPZ3_0899	PF12693	GspL periplasmic domain
YPZ3_0900	PF01478	Type IV leader peptidase family
YPZ3_0900	PF06750	YPZ3_0900
YPZ3_0901	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
YPZ3_0902	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_0903	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPZ3_0903	PF02203	Tar ligand binding domain homologue
YPZ3_0904	PF01323	DSBA-like thioredoxin domain
YPZ3_0905	PF00753	Metallo-beta-lactamase superfamily
YPZ3_0906	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_0906	PF03466	LysR substrate binding domain
YPZ3_0907	PF07690	Major Facilitator Superfamily
YPZ3_0908	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_0908	PF03466	LysR substrate binding domain
YPZ3_0909	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
YPZ3_0909	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
YPZ3_0910	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_0910	PF13377	Periplasmic binding protein-like domain
YPZ3_0911	PF00384	Molybdopterin oxidoreductase
YPZ3_0911	PF01568	Molydopterin dinucleotide binding domain
YPZ3_0912	PF00501	AMP-binding enzyme
YPZ3_0912	PF01553	Acyltransferase
YPZ3_0912	PF13193	AMP-binding enzyme C-terminal domain
YPZ3_0913	PF07690	Major Facilitator Superfamily
YPZ3_0914	PF00248	Aldo/keto reductase family
YPZ3_0915	PF02976	DNA mismatch repair enzyme MutH
YPZ3_0916	PF00293	NUDIX domain
YPZ3_0917	PF00391	PEP-utilising enzyme, mobile domain
YPZ3_0917	PF01590	GAF domain
YPZ3_0917	PF02896	PEP-utilising enzyme, TIM barrel domain
YPZ3_0917	PF05524	PEP-utilising enzyme, N-terminal
YPZ3_0918	PF01790	YPZ3_0918
YPZ3_0919	PF00303	Thymidylate synthase
YPZ3_0920	PF00665	Integrase core domain
YPZ3_0920	PF02796	Helix-turn-helix domain of resolvase
YPZ3_0921	PF00665	Integrase core domain
YPZ3_0922	PF01695	IstB-like ATP binding protein
YPZ3_0924	PF10713	YPZ3_0924
YPZ3_0925	PF07963	Prokaryotic N-terminal methylation motif
YPZ3_0925	PF12528	YPZ3_0925
YPZ3_0926	PF04257	Exodeoxyribonuclease V, gamma subunit
YPZ3_0927	PF00675	Insulinase (Peptidase family M16)
YPZ3_0927	PF05193	Peptidase M16 inactive domain
YPZ3_0927	PF16187	YPZ3_0927
YPZ3_0928	PF00580	UvrD/REP helicase N-terminal domain
YPZ3_0928	PF13361	UvrD-like helicase C-terminal domain
YPZ3_0929	PF13538	UvrD-like helicase C-terminal domain
YPZ3_0929	PF13604	AAA domain
YPZ3_0930	PF00583	Acetyltransferase (GNAT) family
YPZ3_0930	PF00696	Amino acid kinase family
YPZ3_0931	PF01520	N-acetylmuramoyl-L-alanine amidase
YPZ3_0931	PF11741	AMIN domain
YPZ3_0932	PF03562	MltA specific insert domain
YPZ3_0932	PF06725	3D domain
YPZ3_0933	PF00899	ThiF family
YPZ3_0934	PF02657	Fe-S metabolism associated domain
YPZ3_0935	PF00266	Aminotransferase class-V
YPZ3_0936	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_0936	PF03466	LysR substrate binding domain
YPZ3_0937	PF04241	YPZ3_0937
YPZ3_0938	PF01728	FtsJ-like methyltransferase
YPZ3_0939	PF01367	5'-3' exonuclease, C-terminal SAM fold
YPZ3_0939	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
YPZ3_0940	PF03641	Possible lysine decarboxylase
YPZ3_0940	PF11892	Domain of unknown function (DUF3412)
YPZ3_0940	PF14793	Domain of unknown function (DUF4478)
YPZ3_0941	PF14489	QueF-like protein
YPZ3_0941	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
YPZ3_0942	PF07348	Syd protein (SUKH-2)
YPZ3_0943	PF01797	Transposase IS200 like
YPZ3_0944	PF04287	tRNA pseudouridine synthase C
YPZ3_0945	PF00849	RNA pseudouridylate synthase
YPZ3_0946	PF00258	Flavodoxin
YPZ3_0947	PF11944	YPZ3_0947
YPZ3_0948	PF00132	Bacterial transferase hexapeptide (six repeats)
YPZ3_0948	PF14602	Hexapeptide repeat of succinyl-transferase
YPZ3_0948	PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal
YPZ3_0949	PF01842	ACT domain
YPZ3_0949	PF01909	Nucleotidyltransferase domain
YPZ3_0949	PF01966	HD domain
YPZ3_0949	PF08335	GlnD PII-uridylyltransferase
YPZ3_0950	PF00557	Metallopeptidase family M24
YPZ3_0951	PF00318	Ribosomal protein S2
YPZ3_0952	PF00889	Elongation factor TS
YPZ3_0953	PF00696	Amino acid kinase family
YPZ3_0954	PF01765	Ribosome recycling factor
YPZ3_0955	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
YPZ3_0955	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
YPZ3_0955	PF13288	DXP reductoisomerase C-terminal domain
YPZ3_0956	PF01255	Putative undecaprenyl diphosphate synthase
YPZ3_0957	PF01148	Cytidylyltransferase family
YPZ3_0958	PF00595	PDZ domain (Also known as DHR or GLGF)
YPZ3_0958	PF02163	Peptidase family M50
YPZ3_0959	PF01103	Surface antigen
YPZ3_0959	PF07244	Surface antigen variable number repeat
YPZ3_0960	PF03938	Outer membrane protein (OmpH-like)
YPZ3_0961	PF00132	Bacterial transferase hexapeptide (six repeats)
YPZ3_0961	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
YPZ3_0962	PF07977	FabA-like domain
YPZ3_0963	PF00132	Bacterial transferase hexapeptide (six repeats)
YPZ3_0963	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
YPZ3_0964	PF02684	YPZ3_0964
YPZ3_0965	PF01351	Ribonuclease HII
YPZ3_0966	PF01336	OB-fold nucleic acid binding domain
YPZ3_0966	PF02811	PHP domain
YPZ3_0966	PF07733	Bacterial DNA polymerase III alpha subunit
YPZ3_0966	PF14579	Helix-hairpin-helix motif
YPZ3_0967	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
YPZ3_0968	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YPZ3_0969	PF01171	PP-loop family
YPZ3_0969	PF09179	TilS substrate binding domain
YPZ3_0969	PF11734	TilS substrate C-terminal domain
YPZ3_0970	PF00034	Cytochrome c
YPZ3_0971	PF07152	YaeQ protein
YPZ3_0972	PF00472	RF-1 domain
YPZ3_0973	PF04170	NlpE N-terminal domain
YPZ3_0973	PF17185	YPZ3_0973
YPZ3_0974	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
YPZ3_0974	PF03129	Anticodon binding domain
YPZ3_0974	PF04073	Aminoacyl-tRNA editing domain
YPZ3_0975	PF01980	Uncharacterised protein family UPF0066
YPZ3_0976	PF16358	YPZ3_0976
YPZ3_0977	PF03180	NLPA lipoprotein
YPZ3_0978	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_0979	PF00005	ABC transporter
YPZ3_0979	PF09383	NIL domain
YPZ3_0980	PF13242	HAD-hyrolase-like
YPZ3_0981	PF00248	Aldo/keto reductase family
YPZ3_0983	PF03372	Endonuclease/Exonuclease/phosphatase family
YPZ3_0984	PF01464	Transglycosylase SLT domain
YPZ3_0984	PF01476	LysM domain
YPZ3_0985	PF00753	Metallo-beta-lactamase superfamily
YPZ3_0985	PF16123	YPZ3_0985
YPZ3_0986	PF08241	Methyltransferase domain
YPZ3_0987	PF00075	RNase H
YPZ3_0988	PF00929	Exonuclease
YPZ3_0989	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
YPZ3_0990	PF01695	IstB-like ATP binding protein
YPZ3_0991	PF00665	Integrase core domain
YPZ3_0991	PF02796	Helix-turn-helix domain of resolvase
YPZ3_0993	PF13481	AAA domain
YPZ3_0994	PF13362	Toprim domain
YPZ3_0995	PF12834	YPZ3_0995
YPZ3_0995	PF12835	Integrase
YPZ3_0997	PF14130	YPZ3_0997
YPZ3_0998	PF00589	Phage integrase family
YPZ3_0998	PF13356	Domain of unknown function (DUF4102)
YPZ3_0999	PF01797	Transposase IS200 like
YPZ3_1000	PF01668	SmpB protein
YPZ3_1001	PF03364	Polyketide cyclase / dehydrase and lipid transport
YPZ3_1002	PF04355	SmpA / OmlA family
YPZ3_1003	PF02463	RecF/RecN/SMC N terminal domain
YPZ3_1004	PF01513	ATP-NAD kinase
YPZ3_1005	PF01025	GrpE
YPZ3_1006	PF00285	Citrate synthase
YPZ3_1008	PF00890	FAD binding domain
YPZ3_1008	PF02910	Fumarate reductase flavoprotein C-term
YPZ3_1009	PF13085	2Fe-2S iron-sulfur cluster binding domain
YPZ3_1009	PF13534	4Fe-4S dicluster domain
YPZ3_1010	PF00676	Dehydrogenase E1 component
YPZ3_1010	PF02779	Transketolase, pyrimidine binding domain
YPZ3_1010	PF16078	YPZ3_1010
YPZ3_1010	PF16870	YPZ3_1010
YPZ3_1011	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
YPZ3_1011	PF00364	Biotin-requiring enzyme
YPZ3_1011	PF02817	e3 binding domain
YPZ3_1012	PF00549	CoA-ligase
YPZ3_1012	PF08442	ATP-grasp domain
YPZ3_1013	PF00549	CoA-ligase
YPZ3_1013	PF02629	CoA binding domain
YPZ3_1014	PF01654	YPZ3_1014
YPZ3_1015	PF02322	YPZ3_1015
YPZ3_1016	PF01618	YPZ3_1016
YPZ3_1017	PF02472	Biopolymer transport protein ExbD/TolR
YPZ3_1018	PF06519	TolA C-terminal
YPZ3_1019	PF04052	TolB amino-terminal domain
YPZ3_1019	PF07676	WD40-like Beta Propeller Repeat
YPZ3_1020	PF00691	OmpA family
YPZ3_1021	PF13174	Tetratricopeptide repeat
YPZ3_1021	PF13432	Tetratricopeptide repeat
YPZ3_1021	PF16331	YPZ3_1021
YPZ3_1022	PF02445	Quinolinate synthetase A protein
YPZ3_1023	PF04973	YPZ3_1023
YPZ3_1024	PF01545	Cation efflux family
YPZ3_1025	PF00793	DAHP synthetase I family
YPZ3_1026	PF01695	IstB-like ATP binding protein
YPZ3_1027	PF00665	Integrase core domain
YPZ3_1027	PF02796	Helix-turn-helix domain of resolvase
YPZ3_1028	PF00300	Histidine phosphatase superfamily (branch 1)
YPZ3_1029	PF07769	YPZ3_1029
YPZ3_1030	PF01263	Aldose 1-epimerase
YPZ3_1031	PF00288	GHMP kinases N terminal domain
YPZ3_1031	PF08544	GHMP kinases C terminal
YPZ3_1031	PF10509	Galactokinase galactose-binding signature
YPZ3_1032	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
YPZ3_1032	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
YPZ3_1033	PF16363	YPZ3_1033
YPZ3_1034	PF02517	CAAX protease self-immunity
YPZ3_1035	PF00005	ABC transporter
YPZ3_1036	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_1036	PF03459	TOBE domain
YPZ3_1037	PF13531	Bacterial extracellular solute-binding protein
YPZ3_1038	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1039	PF00005	ABC transporter
YPZ3_1039	PF03459	TOBE domain
YPZ3_1040	PF08282	haloacid dehalogenase-like hydrolase
YPZ3_1041	PF10282	Lactonase, 7-bladed beta-propeller
YPZ3_1042	PF00202	Aminotransferase class-III
YPZ3_1043	PF04055	Radical SAM superfamily
YPZ3_1043	PF06968	Biotin and Thiamin Synthesis associated domain
YPZ3_1044	PF00155	Aminotransferase class I and II
YPZ3_1045	PF08241	Methyltransferase domain
YPZ3_1046	PF13500	AAA domain
YPZ3_1047	PF00005	ABC transporter
YPZ3_1048	PF00271	Helicase conserved C-terminal domain
YPZ3_1048	PF02151	UvrB/uvrC motif
YPZ3_1048	PF04851	Type III restriction enzyme, res subunit
YPZ3_1048	PF12344	Ultra-violet resistance protein B
YPZ3_1049	PF01933	Uncharacterised protein family UPF0052
YPZ3_1050	PF04055	Radical SAM superfamily
YPZ3_1050	PF06463	Molybdenum Cofactor Synthesis C
YPZ3_1051	PF01967	MoaC family
YPZ3_1052	PF02391	MoaE protein
YPZ3_1053	PF01027	Inhibitor of apoptosis-promoting Bax1
YPZ3_1054	PF01797	Transposase IS200 like
YPZ3_1055	PF00732	GMC oxidoreductase
YPZ3_1055	PF05199	GMC oxidoreductase
YPZ3_1056	PF00171	Aldehyde dehydrogenase family
YPZ3_1057	PF00440	Bacterial regulatory proteins, tetR family
YPZ3_1057	PF13977	Bacterial transcriptional repressor
YPZ3_1058	PF02028	BCCT family transporter
YPZ3_1059	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_1059	PF03466	LysR substrate binding domain
YPZ3_1060	PF00892	EamA-like transporter family
YPZ3_1061	PF01048	Phosphorylase superfamily
YPZ3_1062	PF03825	YPZ3_1062
YPZ3_1063	PF01797	Transposase IS200 like
YPZ3_1064	PF03825	YPZ3_1064
YPZ3_1065	PF13801	Heavy-metal resistance
YPZ3_1066	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_1066	PF00989	PAS fold
YPZ3_1066	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_1066	PF17203	YPZ3_1066
YPZ3_1067	PF00072	Response regulator receiver domain
YPZ3_1067	PF00158	Sigma-54 interaction domain
YPZ3_1067	PF02954	Bacterial regulatory protein, Fis family
YPZ3_1068	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
YPZ3_1069	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_1069	PF03466	LysR substrate binding domain
YPZ3_1070	PF07110	EthD domain
YPZ3_1071	PF12698	ABC-2 family transporter protein
YPZ3_1072	PF12698	ABC-2 family transporter protein
YPZ3_1073	PF00005	ABC transporter
YPZ3_1074	PF16576	YPZ3_1074
YPZ3_1075	PF00440	Bacterial regulatory proteins, tetR family
YPZ3_1075	PF09209	Domain of unknown function (DUF1956)
YPZ3_1076	PF00270	DEAD/DEAH box helicase
YPZ3_1076	PF00271	Helicase conserved C-terminal domain
YPZ3_1078	PF00872	YPZ3_1078
YPZ3_1079	PF01548	YPZ3_1079
YPZ3_1080	PF00270	DEAD/DEAH box helicase
YPZ3_1080	PF00271	Helicase conserved C-terminal domain
YPZ3_1081	PF01797	Transposase IS200 like
YPZ3_1083	PF01207	Dihydrouridine synthase (Dus)
YPZ3_1084	PF00768	D-alanyl-D-alanine carboxypeptidase
YPZ3_1085	PF01565	FAD binding domain
YPZ3_1085	PF09330	D-lactate dehydrogenase, membrane binding
YPZ3_1086	PF01928	CYTH domain
YPZ3_1087	PF01844	HNH endonuclease
YPZ3_1088	PF05076	Suppressor of fused protein (SUFU)
YPZ3_1089	PF00005	ABC transporter
YPZ3_1090	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
YPZ3_1091	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1092	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1093	PF07308	YPZ3_1093
YPZ3_1094	PF13433	Periplasmic binding protein domain
YPZ3_1095	PF02653	YPZ3_1095
YPZ3_1095	PF13646	HEAT repeats
YPZ3_1096	PF02653	YPZ3_1096
YPZ3_1097	PF00005	ABC transporter
YPZ3_1097	PF12399	Branched-chain amino acid ATP-binding cassette transporter
YPZ3_1098	PF00005	ABC transporter
YPZ3_1099	PF13640	2OG-Fe(II) oxygenase superfamily
YPZ3_1100	PF00282	Pyridoxal-dependent decarboxylase conserved domain
YPZ3_1101	PF00581	Rhodanese-like domain
YPZ3_1102	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YPZ3_1103	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YPZ3_1104	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1105	PF00005	ABC transporter
YPZ3_1106	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1107	PF13520	Amino acid permease
YPZ3_1108	PF01276	Orn/Lys/Arg decarboxylase, major domain
YPZ3_1108	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
YPZ3_1108	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
YPZ3_1109	PF00892	EamA-like transporter family
YPZ3_1110	PF00267	Gram-negative porin
YPZ3_1111	PF06733	DEAD_2
YPZ3_1111	PF13307	Helicase C-terminal domain
YPZ3_1112	PF00199	Catalase
YPZ3_1112	PF06628	Catalase-related immune-responsive
YPZ3_1113	PF07437	YPZ3_1113
YPZ3_1114	PF03222	Tryptophan/tyrosine permease family
YPZ3_1115	PF00994	Probable molybdopterin binding domain
YPZ3_1116	PF03974	Ecotin
YPZ3_1117	PF00268	Ribonucleotide reductase, small chain
YPZ3_1118	PF00317	Ribonucleotide reductase, all-alpha domain
YPZ3_1118	PF02867	Ribonucleotide reductase, barrel domain
YPZ3_1118	PF03477	ATP cone domain
YPZ3_1119	PF13489	Methyltransferase domain
YPZ3_1120	PF00521	DNA gyrase/topoisomerase IV, subunit A
YPZ3_1120	PF03989	DNA gyrase C-terminal domain, beta-propeller
YPZ3_1121	PF00072	Response regulator receiver domain
YPZ3_1121	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_1121	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_1121	PF09456	RcsC Alpha-Beta-Loop (ABL)
YPZ3_1122	PF00072	Response regulator receiver domain
YPZ3_1122	PF00196	Bacterial regulatory proteins, luxR family
YPZ3_1123	PF01627	Hpt domain
YPZ3_1123	PF16359	YPZ3_1123
YPZ3_1124	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_1125	PF07690	Major Facilitator Superfamily
YPZ3_1126	PF00267	Gram-negative porin
YPZ3_1127	PF01797	Transposase IS200 like
YPZ3_1128	PF00144	Beta-lactamase
YPZ3_1129	PF13347	MFS/sugar transport protein
YPZ3_1130	PF12706	Beta-lactamase superfamily domain
YPZ3_1131	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPZ3_1131	PF00672	HAMP domain
YPZ3_1131	PF02743	Cache domain
YPZ3_1132	PF01278	Omptin family
YPZ3_1133	PF00717	Peptidase S24-like
YPZ3_1133	PF01381	Helix-turn-helix
YPZ3_1134	PF06530	YPZ3_1134
YPZ3_1135	PF07005	Protein of unknown function, DUF1537
YPZ3_1135	PF17042	YPZ3_1135
YPZ3_1136	PF00596	Class II Aldolase and Adducin N-terminal domain
YPZ3_1137	PF00455	YPZ3_1137
YPZ3_1137	PF08220	DeoR-like helix-turn-helix domain
YPZ3_1138	PF01261	Xylose isomerase-like TIM barrel
YPZ3_1140	PF04984	Phage tail sheath protein
YPZ3_1140	PF17482	YPZ3_1140
YPZ3_1141	PF10618	YPZ3_1141
YPZ3_1143	PF07157	YPZ3_1143
YPZ3_1144	PF05954	Phage late control gene D protein (GPD)
YPZ3_1145	PF06890	Bacteriophage Mu Gp45 protein
YPZ3_1146	PF07409	YPZ3_1146
YPZ3_1147	PF04865	YPZ3_1147
YPZ3_1148	PF10076	YPZ3_1148
YPZ3_1149	PF07484	Phage Tail Collar Domain
YPZ3_1150	PF01380	SIS domain
YPZ3_1150	PF01418	Helix-turn-helix domain, rpiR family
YPZ3_1151	PF00232	Glycosyl hydrolase family 1
YPZ3_1154	PF12639	DNase/tRNase domain of colicin-like bacteriocin
YPZ3_1156	PF00884	Sulfatase
YPZ3_1156	PF11893	YPZ3_1156
YPZ3_1157	PF04245	YPZ3_1157
YPZ3_1158	PF01797	Transposase IS200 like
YPZ3_1159	PF00271	Helicase conserved C-terminal domain
YPZ3_1159	PF04851	Type III restriction enzyme, res subunit
YPZ3_1160	PF00849	RNA pseudouridylate synthase
YPZ3_1160	PF01479	S4 domain
YPZ3_1161	PF07690	Major Facilitator Superfamily
YPZ3_1162	PF13989	YPZ3_1162
YPZ3_1163	PF00005	ABC transporter
YPZ3_1163	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPZ3_1164	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1164	PF12911	YPZ3_1164
YPZ3_1165	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1166	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPZ3_1167	PF00563	EAL domain
YPZ3_1167	PF12792	YPZ3_1167
YPZ3_1168	PF00877	NlpC/P60 family
YPZ3_1169	PF01569	PAP2 superfamily
YPZ3_1170	PF02492	CobW/HypB/UreG, nucleotide-binding domain
YPZ3_1170	PF07683	Cobalamin synthesis protein cobW C-terminal domain
YPZ3_1171	PF00392	Bacterial regulatory proteins, gntR family
YPZ3_1171	PF07729	FCD domain
YPZ3_1172	PF01232	Mannitol dehydrogenase Rossmann domain
YPZ3_1172	PF08125	Mannitol dehydrogenase C-terminal domain
YPZ3_1173	PF03786	D-mannonate dehydratase (UxuA)
YPZ3_1174	PF01132	Elongation factor P (EF-P) OB domain
YPZ3_1174	PF08207	Elongation factor P (EF-P) KOW-like domain
YPZ3_1174	PF09285	Elongation factor P, C-terminal
YPZ3_1175	PF03222	Tryptophan/tyrosine permease family
YPZ3_1176	PF13561	Enoyl-(Acyl carrier protein) reductase
YPZ3_1177	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPZ3_1177	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPZ3_1178	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPZ3_1179	PF00171	Aldehyde dehydrogenase family
YPZ3_1180	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPZ3_1180	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPZ3_1181	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
YPZ3_1182	PF13407	Periplasmic binding protein domain
YPZ3_1183	PF00005	ABC transporter
YPZ3_1184	PF02653	YPZ3_1184
YPZ3_1185	PF00293	NUDIX domain
YPZ3_1186	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPZ3_1186	PF00381	PTS HPr component phosphorylation site
YPZ3_1187	PF00294	pfkB family carbohydrate kinase
YPZ3_1188	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPZ3_1188	PF02378	Phosphotransferase system, EIIC
YPZ3_1189	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_1190	PF17550	YPZ3_1190
YPZ3_1192	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPZ3_1192	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPZ3_1193	PF00577	Outer membrane usher protein
YPZ3_1193	PF13953	PapC C-terminal domain
YPZ3_1193	PF13954	PapC N-terminal domain
YPZ3_1194	PF01261	Xylose isomerase-like TIM barrel
YPZ3_1195	PF03601	YPZ3_1195
YPZ3_1196	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_1196	PF03466	LysR substrate binding domain
YPZ3_1197	PF00324	Amino acid permease
YPZ3_1198	PF01497	Periplasmic binding protein
YPZ3_1199	PF01032	FecCD transport family
YPZ3_1200	PF00005	ABC transporter
YPZ3_1201	PF00593	TonB dependent receptor
YPZ3_1201	PF07715	TonB-dependent Receptor Plug Domain
YPZ3_1202	PF00043	Glutathione S-transferase, C-terminal domain
YPZ3_1202	PF13417	Glutathione S-transferase, N-terminal domain
YPZ3_1203	PF12710	haloacid dehalogenase-like hydrolase
YPZ3_1204	PF03171	2OG-Fe(II) oxygenase superfamily
YPZ3_1204	PF14226	non-haem dioxygenase in morphine synthesis N-terminal
YPZ3_1205	PF03180	NLPA lipoprotein
YPZ3_1206	PF00005	ABC transporter
YPZ3_1206	PF09383	NIL domain
YPZ3_1207	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1208	PF00768	D-alanyl-D-alanine carboxypeptidase
YPZ3_1208	PF07943	Penicillin-binding protein 5, C-terminal domain
YPZ3_1209	PF03222	Tryptophan/tyrosine permease family
YPZ3_1210	PF00455	YPZ3_1210
YPZ3_1210	PF08220	DeoR-like helix-turn-helix domain
YPZ3_1211	PF01791	DeoC/LacD family aldolase
YPZ3_1212	PF01569	PAP2 superfamily
YPZ3_1214	PF02080	TrkA-C domain
YPZ3_1214	PF06826	YPZ3_1214
YPZ3_1215	PF10722	Putative bacterial sensory transduction regulator
YPZ3_1216	PF13416	Bacterial extracellular solute-binding protein
YPZ3_1217	PF00005	ABC transporter
YPZ3_1217	PF08402	TOBE domain
YPZ3_1218	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1219	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1220	PF10767	YPZ3_1220
YPZ3_1221	PF05958	tRNA (Uracil-5-)-methyltransferase
YPZ3_1222	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPZ3_1223	PF01145	SPFH domain / Band 7 family
YPZ3_1224	PF01497	Periplasmic binding protein
YPZ3_1225	PF01032	FecCD transport family
YPZ3_1226	PF01032	FecCD transport family
YPZ3_1227	PF00005	ABC transporter
YPZ3_1228	PF03059	Nicotianamine synthase protein
YPZ3_1229	PF10100	YPZ3_1229
YPZ3_1230	PF00892	EamA-like transporter family
YPZ3_1231	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1232	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1233	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPZ3_1234	PF00005	ABC transporter
YPZ3_1235	PF01817	Chorismate mutase type II
YPZ3_1236	PF12883	Protein of unknown function (DUF3828)
YPZ3_1237	PF01370	NAD dependent epimerase/dehydratase family
YPZ3_1238	PF11066	YPZ3_1238
YPZ3_1238	PF13460	NADH(P)-binding
YPZ3_1239	PF01212	Beta-eliminating lyase
YPZ3_1240	PF00205	Thiamine pyrophosphate enzyme, central domain
YPZ3_1240	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPZ3_1240	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPZ3_1241	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPZ3_1241	PF00175	Oxidoreductase NAD-binding domain
YPZ3_1241	PF00970	Oxidoreductase FAD-binding domain
YPZ3_1242	PF03063	Prismane/CO dehydrogenase family
YPZ3_1243	PF03956	YPZ3_1243
YPZ3_1244	PF11398	Protein of unknown function (DUF2813)
YPZ3_1245	PF04393	YPZ3_1245
YPZ3_1246	PF16576	YPZ3_1246
YPZ3_1247	PF00005	ABC transporter
YPZ3_1247	PF02687	YPZ3_1247
YPZ3_1247	PF12704	MacB-like periplasmic core domain
YPZ3_1248	PF02617	ATP-dependent Clp protease adaptor protein ClpS
YPZ3_1249	PF00004	ATPase family associated with various cellular activities (AAA)
YPZ3_1249	PF02861	Clp amino terminal domain
YPZ3_1249	PF07724	AAA domain (Cdc48 subfamily)
YPZ3_1249	PF10431	C-terminal, D2-small domain, of ClpB protein
YPZ3_1250	PF01797	Transposase IS200 like
YPZ3_1251	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
YPZ3_1252	PF00005	ABC transporter
YPZ3_1252	PF00664	ABC transporter transmembrane region
YPZ3_1253	PF00005	ABC transporter
YPZ3_1253	PF00664	ABC transporter transmembrane region
YPZ3_1254	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPZ3_1255	PF01037	AsnC family
YPZ3_1255	PF13412	Winged helix-turn-helix DNA-binding
YPZ3_1256	PF01580	FtsK/SpoIIIE family
YPZ3_1256	PF09397	Ftsk gamma domain
YPZ3_1256	PF13491	YPZ3_1256
YPZ3_1257	PF03548	Outer membrane lipoprotein carrier protein LolA
YPZ3_1258	PF00004	ATPase family associated with various cellular activities (AAA)
YPZ3_1258	PF12002	MgsA AAA+ ATPase C terminal
YPZ3_1258	PF16193	YPZ3_1258
YPZ3_1259	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
YPZ3_1259	PF02403	Seryl-tRNA synthetase N-terminal domain
YPZ3_1260	PF07690	Major Facilitator Superfamily
YPZ3_1261	PF04055	Radical SAM superfamily
YPZ3_1261	PF13353	4Fe-4S single cluster domain
YPZ3_1262	PF01755	YPZ3_1262
YPZ3_1263	PF01228	Glycine radical
YPZ3_1263	PF02901	Pyruvate formate lyase
YPZ3_1264	PF01226	Formate/nitrite transporter
YPZ3_1265	PF02624	YcaO-like family
YPZ3_1266	PF00710	Asparaginase
YPZ3_1267	PF03895	YadA-like C-terminal region
YPZ3_1268	PF03895	YadA-like C-terminal region
YPZ3_1269	PF00266	Aminotransferase class-V
YPZ3_1270	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
YPZ3_1271	PF02224	Cytidylate kinase
YPZ3_1272	PF00575	S1 RNA binding domain
YPZ3_1273	PF00753	Metallo-beta-lactamase superfamily
YPZ3_1273	PF03772	YPZ3_1273
YPZ3_1273	PF13567	YPZ3_1273
YPZ3_1274	PF00005	ABC transporter
YPZ3_1274	PF00664	ABC transporter transmembrane region
YPZ3_1275	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
YPZ3_1276	PF07063	Domain of unknown function (DUF1338)
YPZ3_1277	PF02348	Cytidylyltransferase
YPZ3_1278	PF03881	Fructosamine kinase
YPZ3_1279	PF13847	Methyltransferase domain
YPZ3_1280	PF03882	KicB killing factor
YPZ3_1280	PF17192	YPZ3_1280
YPZ3_1280	PF17193	YPZ3_1280
YPZ3_1281	PF04288	MukE-like family
YPZ3_1282	PF04310	MukB N-terminal
YPZ3_1282	PF13558	Putative exonuclease SbcCD, C subunit
YPZ3_1282	PF16330	YPZ3_1282
YPZ3_1283	PF01797	Transposase IS200 like
YPZ3_1284	PF01471	Putative peptidoglycan binding domain
YPZ3_1284	PF03734	L,D-transpeptidase catalytic domain
YPZ3_1285	PF05951	YPZ3_1285
YPZ3_1286	PF00753	Metallo-beta-lactamase superfamily
YPZ3_1287	PF00155	Aminotransferase class I and II
YPZ3_1288	PF00267	Gram-negative porin
YPZ3_1289	PF00152	tRNA synthetases class II (D, K and N)
YPZ3_1289	PF01336	OB-fold nucleic acid binding domain
YPZ3_1290	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
YPZ3_1291	PF01433	Peptidase family M1
YPZ3_1291	PF11940	Domain of unknown function (DUF3458)
YPZ3_1291	PF17432	YPZ3_1291
YPZ3_1292	PF01180	Dihydroorotate dehydrogenase
YPZ3_1293	PF07126	YPZ3_1293
YPZ3_1294	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPZ3_1294	PF03473	MOSC domain
YPZ3_1294	PF03476	MOSC N-terminal beta barrel domain
YPZ3_1295	PF01170	Putative RNA methylase family UPF0020
YPZ3_1295	PF02926	THUMP domain
YPZ3_1295	PF10672	S-adenosylmethionine-dependent methyltransferase
YPZ3_1296	PF00005	ABC transporter
YPZ3_1296	PF12848	ABC transporter
YPZ3_1296	PF16326	YPZ3_1296
YPZ3_1297	PF04403	YPZ3_1297
YPZ3_1298	PF02470	YPZ3_1298
YPZ3_1299	PF03886	Protein of unknown function (DUF330)
YPZ3_1300	PF01797	Transposase IS200 like
YPZ3_1301	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPZ3_1301	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPZ3_1302	PF01695	IstB-like ATP binding protein
YPZ3_1303	PF00665	Integrase core domain
YPZ3_1303	PF02796	Helix-turn-helix domain of resolvase
YPZ3_1304	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPZ3_1305	PF07977	FabA-like domain
YPZ3_1306	PF05362	Lon protease (S16) C-terminal proteolytic domain
YPZ3_1306	PF13654	AAA domain
YPZ3_1307	PF06303	Organiser of macrodomain of Terminus of chromosome
YPZ3_1307	PF17414	YPZ3_1307
YPZ3_1308	PF01797	Transposase IS200 like
YPZ3_1309	PF00691	OmpA family
YPZ3_1309	PF01389	OmpA-like transmembrane domain
YPZ3_1310	PF03846	Cell division inhibitor SulA
YPZ3_1311	PF04993	TfoX N-terminal domain
YPZ3_1311	PF04994	TfoX C-terminal domain
YPZ3_1312	PF12805	YPZ3_1312
YPZ3_1312	PF13515	YPZ3_1312
YPZ3_1313	PF03733	YPZ3_1313
YPZ3_1314	PF00580	UvrD/REP helicase N-terminal domain
YPZ3_1314	PF12462	YPZ3_1314
YPZ3_1314	PF13361	UvrD-like helicase C-terminal domain
YPZ3_1315	PF02142	MGS-like domain
YPZ3_1316	PF09829	YPZ3_1316
YPZ3_1317	PF13380	CoA binding domain
YPZ3_1318	PF08755	Hemimethylated DNA-binding protein YccV like
YPZ3_1319	PF10672	S-adenosylmethionine-dependent methyltransferase
YPZ3_1320	PF04358	DsrC like protein
YPZ3_1323	PF01565	FAD binding domain
YPZ3_1323	PF13480	Acetyltransferase (GNAT) domain
YPZ3_1324	PF13561	Enoyl-(Acyl carrier protein) reductase
YPZ3_1325	PF07977	FabA-like domain
YPZ3_1326	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPZ3_1326	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPZ3_1327	PF13561	Enoyl-(Acyl carrier protein) reductase
YPZ3_1328	PF01154	Hydroxymethylglutaryl-coenzyme A synthase N terminal
YPZ3_1328	PF08540	Hydroxymethylglutaryl-coenzyme A synthase C terminal
YPZ3_1329	PF00378	Enoyl-CoA hydratase/isomerase family
YPZ3_1330	PF00378	Enoyl-CoA hydratase/isomerase family
YPZ3_1331	PF13561	Enoyl-(Acyl carrier protein) reductase
YPZ3_1332	PF13924	YPZ3_1332
YPZ3_1333	PF00698	Acyl transferase domain
YPZ3_1334	PF05591	YPZ3_1334
YPZ3_1335	PF05943	YPZ3_1335
YPZ3_1336	PF05936	YPZ3_1336
YPZ3_1337	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPZ3_1338	PF00691	OmpA family
YPZ3_1339	PF05638	Protein of unknown function (DUF796)
YPZ3_1340	PF00004	ATPase family associated with various cellular activities (AAA)
YPZ3_1340	PF07724	AAA domain (Cdc48 subfamily)
YPZ3_1340	PF10431	C-terminal, D2-small domain, of ClpB protein
YPZ3_1341	PF05954	Phage late control gene D protein (GPD)
YPZ3_1341	PF10106	YPZ3_1341
YPZ3_1341	PF13296	YPZ3_1341
YPZ3_1343	PF10106	YPZ3_1343
YPZ3_1344	PF01551	Peptidase family M23
YPZ3_1346	PF01551	Peptidase family M23
YPZ3_1349	PF06744	YPZ3_1349
YPZ3_1349	PF06761	YPZ3_1349
YPZ3_1350	PF06812	YPZ3_1350
YPZ3_1350	PF16989	YPZ3_1350
YPZ3_1351	PF05488	PAAR motif
YPZ3_1351	PF15607	YPZ3_1351
YPZ3_1353	PF05947	YPZ3_1353
YPZ3_1354	PF06996	YPZ3_1354
YPZ3_1355	PF12790	Type VI secretion lipoprotein
YPZ3_1356	PF04965	Gene 25-like lysozyme
YPZ3_1357	PF06812	YPZ3_1357
YPZ3_1357	PF12486	YPZ3_1357
YPZ3_1358	PF16809	YPZ3_1358
YPZ3_1359	PF00005	ABC transporter
YPZ3_1359	PF12848	ABC transporter
YPZ3_1360	PF16809	YPZ3_1360
YPZ3_1361	PF00872	YPZ3_1361
YPZ3_1362	PF00899	ThiF family
YPZ3_1363	PF00994	Probable molybdopterin binding domain
YPZ3_1363	PF03453	MoeA N-terminal region (domain I and II)
YPZ3_1363	PF03454	MoeA C-terminal region (domain IV)
YPZ3_1364	PF04055	Radical SAM superfamily
YPZ3_1365	PF00005	ABC transporter
YPZ3_1366	PF13437	HlyD family secretion protein
YPZ3_1368	PF00756	Putative esterase
YPZ3_1369	PF00107	Zinc-binding dehydrogenase
YPZ3_1369	PF08240	Alcohol dehydrogenase GroES-like domain
YPZ3_1370	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_1370	PF03466	LysR substrate binding domain
YPZ3_1371	PF06779	YPZ3_1371
YPZ3_1372	PF01227	GTP cyclohydrolase I
YPZ3_1373	PF04235	YPZ3_1373
YPZ3_1374	PF13407	Periplasmic binding protein domain
YPZ3_1375	PF00005	ABC transporter
YPZ3_1376	PF02653	YPZ3_1376
YPZ3_1377	PF02698	DUF218 domain
YPZ3_1378	PF00390	Malic enzyme, N-terminal domain
YPZ3_1378	PF03949	Malic enzyme, NAD binding domain
YPZ3_1379	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
YPZ3_1379	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region
YPZ3_1380	PF04172	YPZ3_1380
YPZ3_1381	PF03788	YPZ3_1381
YPZ3_1382	PF07690	Major Facilitator Superfamily
YPZ3_1383	PF08309	YPZ3_1383
YPZ3_1384	PF13407	Periplasmic binding protein domain
YPZ3_1386	PF01797	Transposase IS200 like
YPZ3_1387	PF01588	Putative tRNA binding domain
YPZ3_1387	PF09334	tRNA synthetases class I (M)
YPZ3_1388	PF10609	ParA/MinD ATPase like
YPZ3_1389	PF00485	Phosphoribulokinase / Uridine kinase family
YPZ3_1390	PF00692	dUTPase
YPZ3_1391	PF05170	YPZ3_1391
YPZ3_1391	PF13502	YPZ3_1391
YPZ3_1392	PF00571	CBS domain
YPZ3_1392	PF03471	Transporter associated domain
YPZ3_1392	PF03741	YPZ3_1392
YPZ3_1393	PF06276	Ferric iron reductase FhuF-like transporter
YPZ3_1393	PF11575	YPZ3_1393
YPZ3_1394	PF00282	Pyridoxal-dependent decarboxylase conserved domain
YPZ3_1395	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
YPZ3_1396	PF13523	Acetyltransferase (GNAT) domain
YPZ3_1397	PF04183	IucA / IucC family
YPZ3_1397	PF06276	Ferric iron reductase FhuF-like transporter
YPZ3_1398	PF00005	ABC transporter
YPZ3_1399	PF01032	FecCD transport family
YPZ3_1400	PF01032	FecCD transport family
YPZ3_1401	PF01497	Periplasmic binding protein
YPZ3_1402	PF00593	TonB dependent receptor
YPZ3_1402	PF07715	TonB-dependent Receptor Plug Domain
YPZ3_1403	PF04183	IucA / IucC family
YPZ3_1403	PF06276	Ferric iron reductase FhuF-like transporter
YPZ3_1404	PF00483	Nucleotidyl transferase
YPZ3_1405	PF00483	Nucleotidyl transferase
YPZ3_1406	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
YPZ3_1406	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
YPZ3_1407	PF01502	Phosphoribosyl-AMP cyclohydrolase
YPZ3_1407	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
YPZ3_1408	PF00977	Histidine biosynthesis protein
YPZ3_1409	PF00977	Histidine biosynthesis protein
YPZ3_1410	PF00117	Glutamine amidotransferase class-I
YPZ3_1411	PF00475	Imidazoleglycerol-phosphate dehydratase
YPZ3_1411	PF13242	HAD-hyrolase-like
YPZ3_1412	PF00155	Aminotransferase class I and II
YPZ3_1413	PF00815	Histidinol dehydrogenase
YPZ3_1414	PF01634	ATP phosphoribosyltransferase
YPZ3_1414	PF08029	HisG, C-terminal domain
YPZ3_1415	PF01370	NAD dependent epimerase/dehydratase family
YPZ3_1416	PF16695	YPZ3_1416
YPZ3_1417	PF02653	YPZ3_1417
YPZ3_1418	PF00005	ABC transporter
YPZ3_1419	PF00005	ABC transporter
YPZ3_1420	PF00465	Iron-containing alcohol dehydrogenase
YPZ3_1421	PF13520	Amino acid permease
YPZ3_1422	PF00929	Exonuclease
YPZ3_1422	PF08411	Exonuclease C-terminal
YPZ3_1423	PF07993	Male sterility protein
YPZ3_1424	PF04363	YPZ3_1424
YPZ3_1425	PF00872	YPZ3_1425
YPZ3_1426	PF02369	Bacterial Ig-like domain (group 1)
YPZ3_1426	PF09134	Invasin, domain 3
YPZ3_1426	PF11924	Protein of unknown function (DUF3442)
YPZ3_1427	PF07690	Major Facilitator Superfamily
YPZ3_1428	PF04134	YPZ3_1428
YPZ3_1429	PF13561	Enoyl-(Acyl carrier protein) reductase
YPZ3_1430	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPZ3_1431	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
YPZ3_1431	PF13378	Enolase C-terminal domain-like
YPZ3_1432	PF01070	FMN-dependent dehydrogenase
YPZ3_1433	PF00764	Arginosuccinate synthase
YPZ3_1434	PF01554	MatE
YPZ3_1435	PF07690	Major Facilitator Superfamily
YPZ3_1436	PF01522	Polysaccharide deacetylase
YPZ3_1438	PF09831	YPZ3_1438
YPZ3_1439	PF00072	Response regulator receiver domain
YPZ3_1439	PF00196	Bacterial regulatory proteins, luxR family
YPZ3_1440	PF06808	YPZ3_1440
YPZ3_1441	PF04290	YPZ3_1441
YPZ3_1442	PF03480	Bacterial extracellular solute-binding protein, family 7
YPZ3_1443	PF01648	4'-phosphopantetheinyl transferase superfamily
YPZ3_1444	PF02065	Melibiase
YPZ3_1444	PF16875	YPZ3_1444
YPZ3_1445	PF01306	LacY proton/sugar symporter
YPZ3_1446	PF00872	YPZ3_1446
YPZ3_1447	PF13419	Haloacid dehalogenase-like hydrolase
YPZ3_1448	PF14002	YPZ3_1448
YPZ3_1449	PF03881	Fructosamine kinase
YPZ3_1450	PF00950	YPZ3_1450
YPZ3_1451	PF00950	YPZ3_1451
YPZ3_1452	PF00005	ABC transporter
YPZ3_1453	PF01297	Periplasmic solute binding protein family
YPZ3_1454	PF01464	Transglycosylase SLT domain
YPZ3_1455	PF01914	YPZ3_1455
YPZ3_1456	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
YPZ3_1456	PF02824	TGS domain
YPZ3_1456	PF03129	Anticodon binding domain
YPZ3_1456	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
YPZ3_1457	PF00707	Translation initiation factor IF-3, C-terminal domain
YPZ3_1458	PF00453	Ribosomal protein L20
YPZ3_1459	PF01409	tRNA synthetases class II core domain (F)
YPZ3_1459	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
YPZ3_1460	PF01588	Putative tRNA binding domain
YPZ3_1460	PF03147	Ferredoxin-fold anticodon binding domain
YPZ3_1460	PF03483	B3/4 domain
YPZ3_1460	PF03484	tRNA synthetase B5 domain
YPZ3_1461	PF10697	YPZ3_1461
YPZ3_1462	PF01032	FecCD transport family
YPZ3_1463	PF00255	Glutathione peroxidase
YPZ3_1464	PF00005	ABC transporter
YPZ3_1465	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
YPZ3_1466	PF00535	Glycosyl transferase family 2
YPZ3_1467	PF00551	Formyl transferase
YPZ3_1467	PF01370	NAD dependent epimerase/dehydratase family
YPZ3_1467	PF02911	Formyl transferase, C-terminal domain
YPZ3_1468	PF01522	Polysaccharide deacetylase
YPZ3_1469	PF02366	YPZ3_1469
YPZ3_1470	PF00892	EamA-like transporter family
YPZ3_1472	PF00877	NlpC/P60 family
YPZ3_1473	PF03099	Biotin/lipoate A/B protein ligase family
YPZ3_1473	PF10437	Bacterial lipoate protein ligase C-terminus
YPZ3_1474	PF02696	YPZ3_1474
YPZ3_1475	PF02696	YPZ3_1475
YPZ3_1476	PF00793	DAHP synthetase I family
YPZ3_1477	PF03618	YPZ3_1477
YPZ3_1478	PF00391	PEP-utilising enzyme, mobile domain
YPZ3_1478	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
YPZ3_1478	PF02896	PEP-utilising enzyme, TIM barrel domain
YPZ3_1479	PF01594	YPZ3_1479
YPZ3_1480	PF01565	FAD binding domain
YPZ3_1480	PF02913	FAD linked oxidases, C-terminal domain
YPZ3_1480	PF13183	4Fe-4S dicluster domain
YPZ3_1481	PF03061	Thioesterase superfamily
YPZ3_1482	PF01521	Iron-sulphur cluster biosynthesis
YPZ3_1483	PF01458	Uncharacterized protein family (UPF0051)
YPZ3_1484	PF00005	ABC transporter
YPZ3_1485	PF01458	Uncharacterized protein family (UPF0051)
YPZ3_1486	PF00266	Aminotransferase class-V
YPZ3_1487	PF02657	Fe-S metabolism associated domain
YPZ3_1488	PF03734	L,D-transpeptidase catalytic domain
YPZ3_1489	PF01695	IstB-like ATP binding protein
YPZ3_1490	PF00665	Integrase core domain
YPZ3_1490	PF02796	Helix-turn-helix domain of resolvase
YPZ3_1491	PF01797	Transposase IS200 like
YPZ3_1492	PF00224	Pyruvate kinase, barrel domain
YPZ3_1492	PF02887	Pyruvate kinase, alpha/beta domain
YPZ3_1493	PF01554	MatE
YPZ3_1494	PF00677	Lumazine binding domain
YPZ3_1495	PF02353	Mycolic acid cyclopropane synthetase
YPZ3_1496	PF07690	Major Facilitator Superfamily
YPZ3_1497	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_1497	PF03466	LysR substrate binding domain
YPZ3_1498	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_1498	PF13377	Periplasmic binding protein-like domain
YPZ3_1499	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
YPZ3_1499	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
YPZ3_1500	PF00877	NlpC/P60 family
YPZ3_1501	PF00462	Glutaredoxin
YPZ3_1502	PF00929	Exonuclease
YPZ3_1503	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YPZ3_1505	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
YPZ3_1506	PF00440	Bacterial regulatory proteins, tetR family
YPZ3_1506	PF16925	YPZ3_1506
YPZ3_1507	PF00884	Sulfatase
YPZ3_1507	PF08019	YPZ3_1507
YPZ3_1508	PF00248	Aldo/keto reductase family
YPZ3_1509	PF01047	MarR family
YPZ3_1510	PF05433	YPZ3_1510
YPZ3_1511	PF03702	Uncharacterised protein family (UPF0075)
YPZ3_1512	PF09864	Membrane-bound lysozyme-inhibitor of c-type lysozyme
YPZ3_1513	PF01243	Pyridoxamine 5'-phosphate oxidase
YPZ3_1513	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
YPZ3_1514	PF00579	tRNA synthetases class I (W and Y)
YPZ3_1514	PF01479	S4 domain
YPZ3_1515	PF08543	Phosphomethylpyrimidine kinase
YPZ3_1516	PF00043	Glutathione S-transferase, C-terminal domain
YPZ3_1516	PF02798	Glutathione S-transferase, N-terminal domain
YPZ3_1517	PF06930	YPZ3_1517
YPZ3_1518	PF00854	POT family
YPZ3_1520	PF00005	ABC transporter
YPZ3_1521	PF00005	ABC transporter
YPZ3_1521	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPZ3_1522	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1522	PF12911	YPZ3_1522
YPZ3_1523	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1524	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPZ3_1525	PF01797	Transposase IS200 like
YPZ3_1526	PF00158	Sigma-54 interaction domain
YPZ3_1526	PF02954	Bacterial regulatory protein, Fis family
YPZ3_1527	PF04012	YPZ3_1527
YPZ3_1528	PF04024	YPZ3_1528
YPZ3_1529	PF04317	YPZ3_1529
YPZ3_1530	PF05128	YPZ3_1530
YPZ3_1531	PF08808	YPZ3_1531
YPZ3_1532	PF09722	YPZ3_1532
YPZ3_1533	PF00158	Sigma-54 interaction domain
YPZ3_1533	PF00989	PAS fold
YPZ3_1534	PF01797	Transposase IS200 like
YPZ3_1535	PF08534	Redoxin
YPZ3_1536	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
YPZ3_1536	PF13378	Enolase C-terminal domain-like
YPZ3_1537	PF00246	Zinc carboxypeptidase
YPZ3_1538	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPZ3_1539	PF01544	CorA-like Mg2+ transporter protein
YPZ3_1540	PF13411	MerR HTH family regulatory protein
YPZ3_1541	PF07859	alpha/beta hydrolase fold
YPZ3_1542	PF01171	PP-loop family
YPZ3_1543	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
YPZ3_1543	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
YPZ3_1543	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPZ3_1543	PF10371	Domain of unknown function
YPZ3_1543	PF12838	4Fe-4S dicluster domain
YPZ3_1543	PF17147	YPZ3_1543
YPZ3_1544	PF00893	Small Multidrug Resistance protein
YPZ3_1545	PF02308	YPZ3_1545
YPZ3_1546	PF03891	YPZ3_1546
YPZ3_1547	PF03724	META domain
YPZ3_1548	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPZ3_1548	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPZ3_1549	PF11739	YPZ3_1549
YPZ3_1550	PF07027	YPZ3_1550
YPZ3_1551	PF01232	Mannitol dehydrogenase Rossmann domain
YPZ3_1551	PF08125	Mannitol dehydrogenase C-terminal domain
YPZ3_1552	PF04198	Putative sugar-binding domain
YPZ3_1553	PF02525	Flavodoxin-like fold
YPZ3_1554	PF00270	DEAD/DEAH box helicase
YPZ3_1554	PF00271	Helicase conserved C-terminal domain
YPZ3_1554	PF04408	Helicase associated domain (HA2)
YPZ3_1554	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
YPZ3_1554	PF11898	YPZ3_1554
YPZ3_1555	PF01381	Helix-turn-helix
YPZ3_1556	PF00089	Trypsin
YPZ3_1557	PF01292	Prokaryotic cytochrome b561
YPZ3_1558	PF04264	YceI-like domain
YPZ3_1560	PF03497	Anthrax toxin LF subunit
YPZ3_1561	PF01797	Transposase IS200 like
YPZ3_1562	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
YPZ3_1563	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_1563	PF00672	HAMP domain
YPZ3_1563	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_1564	PF00072	Response regulator receiver domain
YPZ3_1564	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_1566	PF13520	Amino acid permease
YPZ3_1567	PF07338	Protein of unknown function (DUF1471)
YPZ3_1568	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
YPZ3_1568	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
YPZ3_1568	PF12769	Domain of unknown function (DUF3814)
YPZ3_1569	PF02233	NAD(P) transhydrogenase beta subunit
YPZ3_1570	PF00582	Universal stress protein family
YPZ3_1571	PF00027	Cyclic nucleotide-binding domain
YPZ3_1571	PF13545	Crp-like helix-turn-helix domain
YPZ3_1572	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
YPZ3_1572	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
YPZ3_1573	PF00245	Alkaline phosphatase
YPZ3_1574	PF13208	YPZ3_1574
YPZ3_1575	PF15615	YPZ3_1575
YPZ3_1576	PF13419	Haloacid dehalogenase-like hydrolase
YPZ3_1577	PF13710	ACT domain
YPZ3_1578	PF00205	Thiamine pyrophosphate enzyme, central domain
YPZ3_1578	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPZ3_1578	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPZ3_1579	PF07313	Protein of unknown function (DUF1460)
YPZ3_1580	PF10139	YPZ3_1580
YPZ3_1581	PF07520	YPZ3_1581
YPZ3_1582	PF07520	YPZ3_1582
YPZ3_1584	PF01048	Phosphorylase superfamily
YPZ3_1584	PF10423	Bacterial AMP nucleoside phosphorylase N-terminus
YPZ3_1585	PF13407	Periplasmic binding protein domain
YPZ3_1587	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_1587	PF13377	Periplasmic binding protein-like domain
YPZ3_1588	PF00654	Voltage gated chloride channel
YPZ3_1589	PF13500	AAA domain
YPZ3_1590	PF00480	ROK family
YPZ3_1591	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_1591	PF03466	LysR substrate binding domain
YPZ3_1592	PF07690	Major Facilitator Superfamily
YPZ3_1593	PF05472	DNA replication terminus site-binding protein (Ter protein)
YPZ3_1594	PF00206	Lyase
YPZ3_1594	PF10415	Fumarase C C-terminus
YPZ3_1595	PF01238	Phosphomannose isomerase type I
YPZ3_1596	PF06097	YPZ3_1596
YPZ3_1598	PF13593	SBF-like CPA transporter family (DUF4137)
YPZ3_1599	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPZ3_1599	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
YPZ3_1600	PF02311	AraC-like ligand binding domain
YPZ3_1600	PF12833	Helix-turn-helix domain
YPZ3_1601	PF02653	YPZ3_1601
YPZ3_1602	PF00005	ABC transporter
YPZ3_1603	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPZ3_1604	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPZ3_1604	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPZ3_1605	PF02610	L-arabinose isomerase
YPZ3_1605	PF11762	L-arabinose isomerase C-terminal domain
YPZ3_1606	PF00005	ABC transporter
YPZ3_1606	PF00664	ABC transporter transmembrane region
YPZ3_1606	PF03412	Peptidase C39 family
YPZ3_1607	PF00529	HlyD family secretion protein
YPZ3_1608	PF13533	Biotin-lipoyl like
YPZ3_1609	PF00005	ABC transporter
YPZ3_1609	PF00664	ABC transporter transmembrane region
YPZ3_1610	PF10754	YPZ3_1610
YPZ3_1611	PF02508	YPZ3_1611
YPZ3_1612	PF04060	Putative Fe-S cluster
YPZ3_1612	PF14697	4Fe-4S dicluster domain
YPZ3_1613	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
YPZ3_1613	PF10531	SLBB domain
YPZ3_1613	PF13237	4Fe-4S dicluster domain
YPZ3_1613	PF13375	RnfC Barrel sandwich hybrid domain
YPZ3_1614	PF06445	GyrI-like small molecule binding domain
YPZ3_1614	PF12833	Helix-turn-helix domain
YPZ3_1615	PF03116	YPZ3_1615
YPZ3_1616	PF04205	FMN-binding domain
YPZ3_1617	PF02508	YPZ3_1617
YPZ3_1618	PF00633	Helix-hairpin-helix motif
YPZ3_1618	PF00730	HhH-GPD superfamily base excision DNA repair protein
YPZ3_1618	PF10576	Iron-sulfur binding domain of endonuclease III
YPZ3_1619	PF01370	NAD dependent epimerase/dehydratase family
YPZ3_1620	PF07690	Major Facilitator Superfamily
YPZ3_1621	PF00575	S1 RNA binding domain
YPZ3_1621	PF00773	RNB domain
YPZ3_1621	PF08206	Ribonuclease B OB domain
YPZ3_1622	PF02554	YPZ3_1622
YPZ3_1622	PF13722	YPZ3_1622
YPZ3_1623	PF04328	YPZ3_1623
YPZ3_1624	PF00923	Transaldolase
YPZ3_1625	PF00596	Class II Aldolase and Adducin N-terminal domain
YPZ3_1626	PF01253	Translation initiation factor SUI1
YPZ3_1627	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
YPZ3_1628	PF13176	Tetratricopeptide repeat
YPZ3_1628	PF13432	Tetratricopeptide repeat
YPZ3_1629	PF06305	YPZ3_1629
YPZ3_1630	PF01569	PAP2 superfamily
YPZ3_1631	PF00925	GTP cyclohydrolase II
YPZ3_1632	PF00330	Aconitase family (aconitate hydratase)
YPZ3_1632	PF00694	Aconitase C-terminal domain
YPZ3_1634	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_1634	PF03466	LysR substrate binding domain
YPZ3_1635	PF01131	DNA topoisomerase
YPZ3_1635	PF01396	YPZ3_1635
YPZ3_1635	PF01751	Toprim domain
YPZ3_1635	PF08272	Topoisomerase I zinc-ribbon-like
YPZ3_1636	PF01343	Peptidase family S49
YPZ3_1636	PF08496	YPZ3_1636
YPZ3_1637	PF00106	short chain dehydrogenase
YPZ3_1638	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
YPZ3_1638	PF12557	Cob(I)alamin adenosyltransferase N terminal
YPZ3_1639	PF00849	RNA pseudouridylate synthase
YPZ3_1639	PF01479	S4 domain
YPZ3_1640	PF01300	Telomere recombination
YPZ3_1641	PF02811	PHP domain
YPZ3_1642	PF00425	chorismate binding enzyme
YPZ3_1642	PF04715	Anthranilate synthase component I, N terminal region
YPZ3_1643	PF00117	Glutamine amidotransferase class-I
YPZ3_1644	PF00591	Glycosyl transferase family, a/b domain
YPZ3_1644	PF02885	Glycosyl transferase family, helical bundle domain
YPZ3_1645	PF00218	Indole-3-glycerol phosphate synthase
YPZ3_1645	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
YPZ3_1646	PF00291	Pyridoxal-phosphate dependent enzyme
YPZ3_1647	PF00290	Tryptophan synthase alpha chain
YPZ3_1648	PF04972	BON domain
YPZ3_1649	PF03922	OmpW family
YPZ3_1650	PF06790	YPZ3_1650
YPZ3_1651	PF01740	STAS domain
YPZ3_1652	PF00916	YPZ3_1652
YPZ3_1653	PF04279	YPZ3_1653
YPZ3_1654	PF03061	Thioesterase superfamily
YPZ3_1655	PF00872	YPZ3_1655
YPZ3_1656	PF03544	Gram-negative bacterial TonB protein C-terminal
YPZ3_1656	PF16031	YPZ3_1656
YPZ3_1657	PF13505	Outer membrane protein beta-barrel domain
YPZ3_1658	PF13091	PLD-like domain
YPZ3_1658	PF13396	YPZ3_1658
YPZ3_1659	PF04269	Protein of unknown function, DUF440
YPZ3_1660	PF00005	ABC transporter
YPZ3_1660	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPZ3_1661	PF00005	ABC transporter
YPZ3_1661	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPZ3_1662	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1662	PF12911	YPZ3_1662
YPZ3_1663	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1664	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPZ3_1665	PF01914	YPZ3_1665
YPZ3_1666	PF00171	Aldehyde dehydrogenase family
YPZ3_1666	PF00465	Iron-containing alcohol dehydrogenase
YPZ3_1667	PF00665	Integrase core domain
YPZ3_1667	PF02796	Helix-turn-helix domain of resolvase
YPZ3_1668	PF01695	IstB-like ATP binding protein
YPZ3_1669	PF00265	Thymidine kinase
YPZ3_1670	PF00816	H-NS histone family
YPZ3_1671	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
YPZ3_1671	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
YPZ3_1671	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
YPZ3_1672	PF00072	Response regulator receiver domain
YPZ3_1673	PF02810	SEC-C motif
YPZ3_1674	PF00551	Formyl transferase
YPZ3_1674	PF01842	ACT domain
YPZ3_1675	PF00872	YPZ3_1675
YPZ3_1676	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_1677	PF03372	Endonuclease/Exonuclease/phosphatase family
YPZ3_1678	PF00293	NUDIX domain
YPZ3_1679	PF01131	DNA topoisomerase
YPZ3_1679	PF01751	Toprim domain
YPZ3_1680	PF00586	AIR synthase related protein, N-terminal domain
YPZ3_1680	PF02769	AIR synthase related protein, C-terminal domain
YPZ3_1681	PF00881	Nitroreductase family
YPZ3_1682	PF01343	Peptidase family S49
YPZ3_1683	PF00710	Asparaginase
YPZ3_1684	PF00857	Isochorismatase family
YPZ3_1685	PF07023	YPZ3_1685
YPZ3_1686	PF01641	SelR domain
YPZ3_1687	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
YPZ3_1687	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
YPZ3_1688	PF01263	Aldose 1-epimerase
YPZ3_1689	PF06629	YPZ3_1689
YPZ3_1690	PF06798	YPZ3_1690
YPZ3_1690	PF08298	PrkA AAA domain
YPZ3_1691	PF04285	YPZ3_1691
YPZ3_1692	PF00892	EamA-like transporter family
YPZ3_1693	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_1693	PF03466	LysR substrate binding domain
YPZ3_1694	PF02678	Pirin
YPZ3_1694	PF05726	Pirin C-terminal cupin domain
YPZ3_1695	PF07690	Major Facilitator Superfamily
YPZ3_1696	PF01266	FAD dependent oxidoreductase
YPZ3_1697	PF04293	YPZ3_1697
YPZ3_1698	PF00392	Bacterial regulatory proteins, gntR family
YPZ3_1698	PF07840	FadR C-terminal domain
YPZ3_1699	PF06450	YPZ3_1699
YPZ3_1700	PF02600	Disulfide bond formation protein DsbB
YPZ3_1703	PF00266	Aminotransferase class-V
YPZ3_1704	PF07690	Major Facilitator Superfamily
YPZ3_1705	PF00872	YPZ3_1705
YPZ3_1706	PF02413	YPZ3_1706
YPZ3_1709	PF09327	YPZ3_1709
YPZ3_1709	PF13550	YPZ3_1709
YPZ3_1710	PF06805	YPZ3_1710
YPZ3_1711	PF02498	YPZ3_1711
YPZ3_1713	PF00877	NlpC/P60 family
YPZ3_1713	PF14464	Prokaryotic homologs of the JAB domain
YPZ3_1714	PF05100	YPZ3_1714
YPZ3_1715	PF01797	Transposase IS200 like
YPZ3_1716	PF05939	YPZ3_1716
YPZ3_1717	PF06791	YPZ3_1717
YPZ3_1717	PF09718	YPZ3_1717
YPZ3_1718	PF08748	YPZ3_1718
YPZ3_1719	PF02368	Bacterial Ig-like domain (group 2)
YPZ3_1719	PF08813	YPZ3_1719
YPZ3_1720	PF13554	Bacteriophage related domain of unknown function
YPZ3_1724	PF02368	Bacterial Ig-like domain (group 2)
YPZ3_1727	PF13264	YPZ3_1727
YPZ3_1730	PF00872	YPZ3_1730
YPZ3_1732	PF10045	YPZ3_1732
YPZ3_1734	PF03374	YPZ3_1734
YPZ3_1735	PF03245	YPZ3_1735
YPZ3_1736	PF00959	Phage lysozyme
YPZ3_1737	PF02498	YPZ3_1737
YPZ3_1738	PF05766	YPZ3_1738
YPZ3_1739	PF05772	NinB protein
YPZ3_1740	PF02086	D12 class N6 adenine-specific DNA methyltransferase
YPZ3_1741	PF01695	IstB-like ATP binding protein
YPZ3_1742	PF00665	Integrase core domain
YPZ3_1742	PF02796	Helix-turn-helix domain of resolvase
YPZ3_1743	PF00589	Phage integrase family
YPZ3_1743	PF12167	YPZ3_1743
YPZ3_1744	PF03692	YPZ3_1744
YPZ3_1745	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPZ3_1746	PF13406	Transglycosylase SLT domain
YPZ3_1747	PF03775	Septum formation inhibitor MinC, C-terminal domain
YPZ3_1747	PF05209	Septum formation inhibitor MinC, N-terminal domain
YPZ3_1748	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
YPZ3_1749	PF00570	HRDC domain
YPZ3_1749	PF01612	3'-5' exonuclease
YPZ3_1750	PF00501	AMP-binding enzyme
YPZ3_1750	PF13193	AMP-binding enzyme C-terminal domain
YPZ3_1751	PF03843	YPZ3_1751
YPZ3_1752	PF00814	Glycoprotease family
YPZ3_1753	PF06733	DEAD_2
YPZ3_1753	PF13307	Helicase C-terminal domain
YPZ3_1754	PF01042	Endoribonuclease L-PSP
YPZ3_1755	PF00893	Small Multidrug Resistance protein
YPZ3_1756	PF00893	Small Multidrug Resistance protein
YPZ3_1757	PF01081	KDPG and KHG aldolase
YPZ3_1758	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
YPZ3_1758	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
YPZ3_1759	PF01380	SIS domain
YPZ3_1759	PF01418	Helix-turn-helix domain, rpiR family
YPZ3_1760	PF00224	Pyruvate kinase, barrel domain
YPZ3_1760	PF02887	Pyruvate kinase, alpha/beta domain
YPZ3_1761	PF03279	YPZ3_1761
YPZ3_1762	PF01551	Peptidase family M23
YPZ3_1762	PF04225	Opacity-associated protein A LysM-like domain
YPZ3_1763	PF01297	Periplasmic solute binding protein family
YPZ3_1764	PF00005	ABC transporter
YPZ3_1765	PF00950	YPZ3_1765
YPZ3_1766	PF05491	Holliday junction DNA helicase ruvB C-terminus
YPZ3_1766	PF05496	Holliday junction DNA helicase ruvB N-terminus
YPZ3_1767	PF01330	RuvA N terminal domain
YPZ3_1767	PF07499	RuvA, C-terminal domain
YPZ3_1767	PF14520	Helix-hairpin-helix domain
YPZ3_1768	PF02075	Crossover junction endodeoxyribonuclease RuvC
YPZ3_1769	PF01709	Transcriptional regulator
YPZ3_1770	PF00293	NUDIX domain
YPZ3_1771	PF00152	tRNA synthetases class II (D, K and N)
YPZ3_1771	PF01336	OB-fold nucleic acid binding domain
YPZ3_1771	PF02938	GAD domain
YPZ3_1772	PF01904	Protein of unknown function DUF72
YPZ3_1773	PF01124	MAPEG family
YPZ3_1774	PF13649	Methyltransferase domain
YPZ3_1775	PF08003	Protein of unknown function (DUF1698)
YPZ3_1776	PF03932	CutC family
YPZ3_1777	PF06185	YecM protein
YPZ3_1778	PF00750	tRNA synthetases class I (R)
YPZ3_1778	PF03485	Arginyl tRNA synthetase N terminal domain
YPZ3_1778	PF05746	DALR anticodon binding domain
YPZ3_1779	PF05860	haemagglutination activity domain
YPZ3_1779	PF13332	YPZ3_1779
YPZ3_1780	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPZ3_1780	PF08479	POTRA domain, ShlB-type
YPZ3_1780	PF17287	YPZ3_1780
YPZ3_1781	PF03023	YPZ3_1781
YPZ3_1782	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPZ3_1782	PF04337	Protein of unknown function, DUF480
YPZ3_1783	PF13302	Acetyltransferase (GNAT) domain
YPZ3_1784	PF07690	Major Facilitator Superfamily
YPZ3_1785	PF07273	Protein of unknown function (DUF1439)
YPZ3_1786	PF02613	Nitrate reductase delta subunit
YPZ3_1787	PF02811	PHP domain
YPZ3_1788	PF00480	ROK family
YPZ3_1788	PF13412	Winged helix-turn-helix DNA-binding
YPZ3_1789	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPZ3_1790	PF00005	ABC transporter
YPZ3_1791	PF01797	Transposase IS200 like
YPZ3_1792	PF00005	ABC transporter
YPZ3_1793	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1794	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1795	PF13416	Bacterial extracellular solute-binding protein
YPZ3_1796	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPZ3_1797	PF00916	YPZ3_1797
YPZ3_1797	PF01740	STAS domain
YPZ3_1798	PF00793	DAHP synthetase I family
YPZ3_1799	PF13369	YPZ3_1799
YPZ3_1799	PF13371	Tetratricopeptide repeat
YPZ3_1800	PF04247	YPZ3_1800
YPZ3_1801	PF13847	Methyltransferase domain
YPZ3_1802	PF00472	RF-1 domain
YPZ3_1802	PF03462	PCRF domain
YPZ3_1803	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
YPZ3_1803	PF01488	Shikimate / quinate 5-dehydrogenase
YPZ3_1803	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
YPZ3_1804	PF03550	Outer membrane lipoprotein LolB
YPZ3_1805	PF00288	GHMP kinases N terminal domain
YPZ3_1805	PF08544	GHMP kinases C terminal
YPZ3_1806	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
YPZ3_1806	PF14572	Phosphoribosyl synthetase-associated domain
YPZ3_1807	PF01195	Peptidyl-tRNA hydrolase
YPZ3_1808	PF01926	50S ribosome-binding GTPase
YPZ3_1808	PF06071	Protein of unknown function (DUF933)
YPZ3_1809	PF13683	YPZ3_1809
YPZ3_1810	PF00581	Rhodanese-like domain
YPZ3_1811	PF07859	alpha/beta hydrolase fold
YPZ3_1813	PF13316	YPZ3_1813
YPZ3_1814	PF14358	YPZ3_1814
YPZ3_1815	PF12682	Flavodoxin
YPZ3_1816	PF01738	Dienelactone hydrolase family
YPZ3_1817	PF00072	Response regulator receiver domain
YPZ3_1817	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_1818	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_1818	PF00672	HAMP domain
YPZ3_1818	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_1819	PF02627	Carboxymuconolactone decarboxylase family
YPZ3_1820	PF07883	Cupin domain
YPZ3_1821	PF12697	Alpha/beta hydrolase family
YPZ3_1822	PF13646	HEAT repeats
YPZ3_1825	PF00106	short chain dehydrogenase
YPZ3_1826	PF08242	Methyltransferase domain
YPZ3_1827	PF02502	Ribose/Galactose Isomerase
YPZ3_1827	PF12408	Ribose-5-phosphate isomerase
YPZ3_1828	PF13226	YPZ3_1828
YPZ3_1829	PF07661	YPZ3_1829
YPZ3_1829	PF08238	Sel1 repeat
YPZ3_1830	PF00872	YPZ3_1830
YPZ3_1833	PF04101	Glycosyltransferase family 28 C-terminal domain
YPZ3_1835	PF13506	Glycosyl transferase family 21
YPZ3_1836	PF01370	NAD dependent epimerase/dehydratase family
YPZ3_1838	PF00753	Metallo-beta-lactamase superfamily
YPZ3_1839	PF01370	NAD dependent epimerase/dehydratase family
YPZ3_1840	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
YPZ3_1841	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YPZ3_1842	PF00425	chorismate binding enzyme
YPZ3_1843	PF05962	HutD
YPZ3_1844	PF01979	Amidohydrolase family
YPZ3_1845	PF00392	Bacterial regulatory proteins, gntR family
YPZ3_1845	PF07702	UTRA domain
YPZ3_1846	PF01979	Amidohydrolase family
YPZ3_1847	PF05013	N-formylglutamate amidohydrolase
YPZ3_1848	PF01695	IstB-like ATP binding protein
YPZ3_1849	PF00665	Integrase core domain
YPZ3_1849	PF02796	Helix-turn-helix domain of resolvase
YPZ3_1850	PF00005	ABC transporter
YPZ3_1851	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1852	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1853	PF01547	Bacterial extracellular solute-binding protein
YPZ3_1854	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPZ3_1855	PF00392	Bacterial regulatory proteins, gntR family
YPZ3_1855	PF07702	UTRA domain
YPZ3_1858	PF00872	YPZ3_1858
YPZ3_1859	PF00872	YPZ3_1859
YPZ3_1860	PF13676	TIR domain
YPZ3_1861	PF10908	YPZ3_1861
YPZ3_1862	PF01527	Transposase
YPZ3_1863	PF00665	Integrase core domain
YPZ3_1864	PF05638	Protein of unknown function (DUF796)
YPZ3_1865	PF01066	CDP-alcohol phosphatidyltransferase
YPZ3_1866	PF01541	GIY-YIG catalytic domain
YPZ3_1866	PF02151	UvrB/uvrC motif
YPZ3_1866	PF08459	UvrC Helix-hairpin-helix N-terminal
YPZ3_1866	PF14520	Helix-hairpin-helix domain
YPZ3_1867	PF00072	Response regulator receiver domain
YPZ3_1867	PF00196	Bacterial regulatory proteins, luxR family
YPZ3_1868	PF06942	YPZ3_1868
YPZ3_1869	PF13505	Outer membrane protein beta-barrel domain
YPZ3_1870	PF00324	Amino acid permease
YPZ3_1871	PF01344	Kelch motif
YPZ3_1872	PF03358	NADPH-dependent FMN reductase
YPZ3_1873	PF04261	Dyp-type peroxidase family
YPZ3_1874	PF09375	Imelysin
YPZ3_1874	PF13473	Cupredoxin-like domain
YPZ3_1875	PF03239	YPZ3_1875
YPZ3_1876	PF00474	Sodium:solute symporter family
YPZ3_1877	PF00171	Aldehyde dehydrogenase family
YPZ3_1877	PF01619	Proline dehydrogenase
YPZ3_1877	PF14850	DNA-binding domain of Proline dehydrogenase
YPZ3_1879	PF00005	ABC transporter
YPZ3_1880	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1881	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPZ3_1882	PF00291	Pyridoxal-phosphate dependent enzyme
YPZ3_1883	PF02899	Phage integrase, N-terminal SAM-like domain
YPZ3_1884	PF04539	Sigma-70 region 3
YPZ3_1884	PF04542	Sigma-70 region 2
YPZ3_1884	PF04545	Sigma-70, region 4
YPZ3_1885	PF00669	Bacterial flagellin N-terminal helical region
YPZ3_1885	PF00700	Bacterial flagellin C-terminal helical region
YPZ3_1886	PF02465	YPZ3_1886
YPZ3_1886	PF07195	YPZ3_1886
YPZ3_1886	PF07196	Flagellin hook IN motif
YPZ3_1887	PF02561	Flagellar protein FliS
YPZ3_1888	PF12833	Helix-turn-helix domain
YPZ3_1890	PF13487	HD domain
YPZ3_1891	PF00730	HhH-GPD superfamily base excision DNA repair protein
YPZ3_1892	PF02049	YPZ3_1892
YPZ3_1893	PF01514	Secretory protein of YscJ/FliF family
YPZ3_1893	PF08345	YPZ3_1893
YPZ3_1894	PF01706	FliG C-terminal domain
YPZ3_1894	PF14841	FliG middle domain
YPZ3_1894	PF14842	FliG N-terminal domain
YPZ3_1895	PF02108	YPZ3_1895
YPZ3_1896	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPZ3_1897	PF02050	Flagellar FliJ protein
YPZ3_1898	PF02120	Flagellar hook-length control protein FliK
YPZ3_1899	PF03748	YPZ3_1899
YPZ3_1900	PF01052	Surface presentation of antigens (SPOA)
YPZ3_1900	PF02154	Flagellar motor switch protein FliM
YPZ3_1901	PF01052	Surface presentation of antigens (SPOA)
YPZ3_1901	PF16973	YPZ3_1901
YPZ3_1902	PF04347	YPZ3_1902
YPZ3_1903	PF00813	YPZ3_1903
YPZ3_1904	PF01311	YPZ3_1904
YPZ3_1905	PF15919	YPZ3_1905
YPZ3_1906	PF00294	pfkB family carbohydrate kinase
YPZ3_1907	PF02653	YPZ3_1907
YPZ3_1908	PF00005	ABC transporter
YPZ3_1909	PF13407	Periplasmic binding protein domain
YPZ3_1910	PF02653	YPZ3_1910
YPZ3_1911	PF00596	Class II Aldolase and Adducin N-terminal domain
YPZ3_1911	PF13561	Enoyl-(Acyl carrier protein) reductase
YPZ3_1912	PF04198	Putative sugar-binding domain
YPZ3_1913	PF00669	Bacterial flagellin N-terminal helical region
YPZ3_1914	PF00460	Flagella basal body rod protein
YPZ3_1914	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPZ3_1915	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
YPZ3_1915	PF10135	YPZ3_1915
YPZ3_1916	PF02119	YPZ3_1916
YPZ3_1917	PF02107	YPZ3_1917
YPZ3_1918	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPZ3_1919	PF00460	Flagella basal body rod protein
YPZ3_1920	PF00460	Flagella basal body rod protein
YPZ3_1920	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPZ3_1920	PF07559	Flagellar basal body protein FlaE
YPZ3_1921	PF03963	YPZ3_1921
YPZ3_1921	PF13860	FlgD Ig-like domain
YPZ3_1921	PF13861	FlgD Tudor-like domain
YPZ3_1922	PF00460	Flagella basal body rod protein
YPZ3_1922	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPZ3_1923	PF00460	Flagella basal body rod protein
YPZ3_1924	PF13144	SAF-like
YPZ3_1925	PF04316	Anti-sigma-28 factor, FlgM
YPZ3_1926	PF05130	FlgN protein
YPZ3_1927	PF02369	Bacterial Ig-like domain (group 1)
YPZ3_1927	PF07979	Intimin C-type lectin domain
YPZ3_1927	PF09134	Invasin, domain 3
YPZ3_1927	PF11924	Protein of unknown function (DUF3442)
YPZ3_1928	PF01797	Transposase IS200 like
YPZ3_1929	PF06366	YPZ3_1929
YPZ3_1930	PF00771	FHIPEP family
YPZ3_1931	PF01312	FlhB HrpN YscU SpaS Family
YPZ3_1933	PF07377	Protein of unknown function (DUF1493)
YPZ3_1934	PF10709	YPZ3_1934
YPZ3_1935	PF05425	YPZ3_1935
YPZ3_1936	PF04234	CopC domain
YPZ3_1937	PF00210	Ferritin-like domain
YPZ3_1938	PF00561	alpha/beta hydrolase fold
YPZ3_1939	PF00326	Prolyl oligopeptidase family
YPZ3_1939	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
YPZ3_1940	PF13995	YebF-like protein
YPZ3_1941	PF04266	ASCH domain
YPZ3_1942	PF07130	YebG protein
YPZ3_1943	PF00270	DEAD/DEAH box helicase
YPZ3_1943	PF00271	Helicase conserved C-terminal domain
YPZ3_1943	PF03880	DbpA RNA binding domain
YPZ3_1944	PF02222	ATP-grasp domain
YPZ3_1945	PF00425	chorismate binding enzyme
YPZ3_1945	PF04715	Anthranilate synthase component I, N terminal region
YPZ3_1946	PF00293	NUDIX domain
YPZ3_1947	PF03313	YPZ3_1947
YPZ3_1947	PF03315	Serine dehydratase beta chain
YPZ3_1948	PF01613	Flavin reductase like domain
YPZ3_1949	PF03241	4-hydroxyphenylacetate 3-hydroxylase C terminal
YPZ3_1949	PF11794	4-hydroxyphenylacetate 3-hydroxylase N terminal
YPZ3_1950	PF07690	Major Facilitator Superfamily
YPZ3_1950	PF11700	YPZ3_1950
YPZ3_1951	PF03328	HpcH/HpaI aldolase/citrate lyase family
YPZ3_1953	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase
YPZ3_1954	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
YPZ3_1955	PF00171	Aldehyde dehydrogenase family
YPZ3_1956	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPZ3_1957	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPZ3_1958	PF01047	MarR family
YPZ3_1959	PF00571	CBS domain
YPZ3_1959	PF03471	Transporter associated domain
YPZ3_1959	PF03741	YPZ3_1959
YPZ3_1960	PF03610	PTS system fructose IIA component
YPZ3_1960	PF03830	PTS system sorbose subfamily IIB component
YPZ3_1961	PF03609	YPZ3_1961
YPZ3_1962	PF03613	YPZ3_1962
YPZ3_1963	PF06173	YPZ3_1963
YPZ3_1964	PF02659	YPZ3_1964
YPZ3_1965	PF00593	TonB dependent receptor
YPZ3_1965	PF07715	TonB-dependent Receptor Plug Domain
YPZ3_1966	PF00989	PAS fold
YPZ3_1966	PF00990	GGDEF domain
YPZ3_1966	PF13426	PAS domain
YPZ3_1967	PF13847	Methyltransferase domain
YPZ3_1968	PF02578	Multi-copper polyphenol oxidoreductase laccase
YPZ3_1969	PF07017	Antimicrobial peptide resistance and lipid A acylation protein PagP
YPZ3_1970	PF00324	Amino acid permease
YPZ3_1971	PF12833	Helix-turn-helix domain
YPZ3_1972	PF00005	ABC transporter
YPZ3_1972	PF00664	ABC transporter transmembrane region
YPZ3_1973	PF01163	RIO1 family
YPZ3_1974	PF06167	Glucose-regulated metallo-peptidase M90
YPZ3_1975	PF01695	IstB-like ATP binding protein
YPZ3_1976	PF00665	Integrase core domain
YPZ3_1976	PF02796	Helix-turn-helix domain of resolvase
YPZ3_1977	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_1977	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPZ3_1978	PF00872	YPZ3_1978
YPZ3_1979	PF07883	Cupin domain
YPZ3_1980	PF04962	KduI/IolB family
YPZ3_1981	PF13561	Enoyl-(Acyl carrier protein) reductase
YPZ3_1982	PF06917	Periplasmic pectate lyase
YPZ3_1983	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1984	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_1985	PF00005	ABC transporter
YPZ3_1986	PF01547	Bacterial extracellular solute-binding protein
YPZ3_1987	PF06178	Oligogalacturonate-specific porin protein (KdgM)
YPZ3_1988	PF04307	YPZ3_1988
YPZ3_1989	PF00375	Sodium:dicarboxylate symporter family
YPZ3_1990	PF01471	Putative peptidoglycan binding domain
YPZ3_1990	PF01510	N-acetylmuramoyl-L-alanine amidase
YPZ3_1991	PF01614	Bacterial transcriptional regulator
YPZ3_1991	PF09339	IclR helix-turn-helix domain
YPZ3_1992	PF14583	Oligogalacturonate lyase
YPZ3_1993	PF07690	Major Facilitator Superfamily
YPZ3_1994	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPZ3_1994	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPZ3_1995	PF00419	Fimbrial protein
YPZ3_1996	PF00577	Outer membrane usher protein
YPZ3_1996	PF13953	PapC C-terminal domain
YPZ3_1996	PF13954	PapC N-terminal domain
YPZ3_1997	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPZ3_1997	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPZ3_1998	PF16970	YPZ3_1998
YPZ3_1999	PF01435	Peptidase family M48
YPZ3_2000	PF00595	PDZ domain (Also known as DHR or GLGF)
YPZ3_2000	PF03572	Peptidase family S41
YPZ3_2000	PF11818	YPZ3_2000
YPZ3_2001	PF04352	ProQ/FINO family
YPZ3_2001	PF17516	YPZ3_2001
YPZ3_2002	PF13185	GAF domain
YPZ3_2003	PF04403	YPZ3_2003
YPZ3_2004	PF02470	YPZ3_2004
YPZ3_2005	PF05229	YPZ3_2005
YPZ3_2006	PF05229	YPZ3_2006
YPZ3_2007	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPZ3_2008	PF00577	Outer membrane usher protein
YPZ3_2008	PF13953	PapC C-terminal domain
YPZ3_2009	PF05229	YPZ3_2009
YPZ3_2010	PF04266	ASCH domain
YPZ3_2011	PF00665	Integrase core domain
YPZ3_2011	PF02796	Helix-turn-helix domain of resolvase
YPZ3_2012	PF01695	IstB-like ATP binding protein
YPZ3_2013	PF01734	Patatin-like phospholipase
YPZ3_2014	PF00842	Alanine racemase, C-terminal domain
YPZ3_2014	PF01168	Alanine racemase, N-terminal domain
YPZ3_2016	PF03895	YadA-like C-terminal region
YPZ3_2016	PF05662	Coiled stalk of trimeric autotransporter adhesin
YPZ3_2017	PF05658	Head domain of trimeric autotransporter adhesin
YPZ3_2017	PF05662	Coiled stalk of trimeric autotransporter adhesin
YPZ3_2018	PF01510	N-acetylmuramoyl-L-alanine amidase
YPZ3_2019	PF04344	Chemotaxis phosphatase, CheZ
YPZ3_2020	PF00072	Response regulator receiver domain
YPZ3_2021	PF00072	Response regulator receiver domain
YPZ3_2021	PF01339	CheB methylesterase
YPZ3_2022	PF01739	CheR methyltransferase, SAM binding domain
YPZ3_2022	PF03705	CheR methyltransferase, all-alpha domain
YPZ3_2023	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPZ3_2023	PF00672	HAMP domain
YPZ3_2023	PF02203	Tar ligand binding domain homologue
YPZ3_2024	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPZ3_2024	PF00672	HAMP domain
YPZ3_2024	PF02203	Tar ligand binding domain homologue
YPZ3_2026	PF10101	YPZ3_2026
YPZ3_2027	PF03797	Autotransporter beta-domain
YPZ3_2028	PF08348	YPZ3_2028
YPZ3_2028	PF13309	YPZ3_2028
YPZ3_2029	PF01261	Xylose isomerase-like TIM barrel
YPZ3_2030	PF01042	Endoribonuclease L-PSP
YPZ3_2031	PF07690	Major Facilitator Superfamily
YPZ3_2032	PF01584	CheW-like domain
YPZ3_2033	PF01584	CheW-like domain
YPZ3_2033	PF01627	Hpt domain
YPZ3_2033	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_2033	PF02895	Signal transducing histidine kinase, homodimeric domain
YPZ3_2033	PF09078	CheY binding
YPZ3_2034	PF00691	OmpA family
YPZ3_2034	PF13677	YPZ3_2034
YPZ3_2035	PF01618	YPZ3_2035
YPZ3_2036	PF05280	Flagellar transcriptional activator (FlhC)
YPZ3_2037	PF00122	E1-E2 ATPase
YPZ3_2037	PF00689	Cation transporting ATPase, C-terminus
YPZ3_2037	PF00690	Cation transporter/ATPase, N-terminus
YPZ3_2037	PF00702	haloacid dehalogenase-like hydrolase
YPZ3_2038	PF02308	YPZ3_2038
YPZ3_2039	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPZ3_2039	PF02203	Tar ligand binding domain homologue
YPZ3_2040	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPZ3_2041	PF00703	Glycosyl hydrolases family 2
YPZ3_2041	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
YPZ3_2041	PF02837	Glycosyl hydrolases family 2, sugar binding domain
YPZ3_2041	PF02929	Beta galactosidase small chain
YPZ3_2041	PF16353	YPZ3_2041
YPZ3_2042	PF00107	Zinc-binding dehydrogenase
YPZ3_2042	PF08240	Alcohol dehydrogenase GroES-like domain
YPZ3_2043	PF10777	YPZ3_2043
YPZ3_2044	PF01037	AsnC family
YPZ3_2044	PF13412	Winged helix-turn-helix DNA-binding
YPZ3_2045	PF11004	YPZ3_2045
YPZ3_2046	PF00328	Histidine phosphatase superfamily (branch 2)
YPZ3_2047	PF01638	HxlR-like helix-turn-helix
YPZ3_2048	PF05368	NmrA-like family
YPZ3_2049	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPZ3_2049	PF08447	PAS fold
YPZ3_2050	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_2050	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPZ3_2051	PF00180	Isocitrate/isopropylmalate dehydrogenase
YPZ3_2052	PF00849	RNA pseudouridylate synthase
YPZ3_2053	PF00293	NUDIX domain
YPZ3_2054	PF03054	tRNA methyl transferase
YPZ3_2055	PF04356	Protein of unknown function (DUF489)
YPZ3_2056	PF00206	Lyase
YPZ3_2056	PF08328	Adenylosuccinate lyase C-terminal
YPZ3_2057	PF13505	Outer membrane protein beta-barrel domain
YPZ3_2058	PF00072	Response regulator receiver domain
YPZ3_2058	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_2059	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_2059	PF08918	PhoQ Sensor
YPZ3_2060	PF08007	Cupin superfamily protein
YPZ3_2061	PF01546	Peptidase family M20/M25/M40
YPZ3_2061	PF07687	Peptidase dimerisation domain
YPZ3_2062	PF02146	Sir2 family
YPZ3_2063	PF00480	ROK family
YPZ3_2064	PF02687	YPZ3_2064
YPZ3_2064	PF12704	MacB-like periplasmic core domain
YPZ3_2065	PF00005	ABC transporter
YPZ3_2066	PF02687	YPZ3_2066
YPZ3_2066	PF12704	MacB-like periplasmic core domain
YPZ3_2067	PF00270	DEAD/DEAH box helicase
YPZ3_2067	PF00271	Helicase conserved C-terminal domain
YPZ3_2067	PF02559	CarD-like/TRCF domain
YPZ3_2067	PF03461	TRCF domain
YPZ3_2068	PF05433	YPZ3_2068
YPZ3_2069	PF00872	YPZ3_2069
YPZ3_2072	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPZ3_2073	PF05728	Uncharacterised protein family (UPF0227)
YPZ3_2074	PF00933	Glycosyl hydrolase family 3 N terminal domain
YPZ3_2075	PF01636	Phosphotransferase enzyme family
YPZ3_2076	PF13036	Protein of unknown function (DUF3897)
YPZ3_2077	PF07233	Protein of unknown function (DUF1425)
YPZ3_2078	PF01230	HIT domain
YPZ3_2079	PF08501	Shikimate dehydrogenase substrate binding domain
YPZ3_2080	PF01797	Transposase IS200 like
YPZ3_2081	PF00367	phosphotransferase system, EIIB
YPZ3_2081	PF02378	Phosphotransferase system, EIIC
YPZ3_2082	PF01026	TatD related DNase
YPZ3_2083	PF09115	DNA polymerase III, delta subunit, C terminal
YPZ3_2083	PF13177	DNA polymerase III, delta subunit
YPZ3_2084	PF02223	Thymidylate kinase
YPZ3_2085	PF02618	YceG-like family
YPZ3_2086	PF01063	Aminotransferase class IV
YPZ3_2087	PF01797	Transposase IS200 like
YPZ3_2088	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPZ3_2088	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPZ3_2089	PF13561	Enoyl-(Acyl carrier protein) reductase
YPZ3_2090	PF00698	Acyl transferase domain
YPZ3_2091	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
YPZ3_2091	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YPZ3_2092	PF02504	Fatty acid synthesis protein
YPZ3_2093	PF02620	YPZ3_2093
YPZ3_2094	PF02545	Maf-like protein
YPZ3_2095	PF01797	Transposase IS200 like
YPZ3_2096	PF00849	RNA pseudouridylate synthase
YPZ3_2096	PF01479	S4 domain
YPZ3_2097	PF00575	S1 RNA binding domain
YPZ3_2097	PF10150	Ribonuclease E/G family
YPZ3_2097	PF12111	Polyribonucleotide phosphorylase C terminal
YPZ3_2098	PF00872	YPZ3_2098
YPZ3_2099	PF01979	Amidohydrolase family
YPZ3_2100	PF00872	YPZ3_2100
YPZ3_2101	PF01266	FAD dependent oxidoreductase
YPZ3_2102	PF00196	Bacterial regulatory proteins, luxR family
YPZ3_2103	PF01594	YPZ3_2103
YPZ3_2104	PF00581	Rhodanese-like domain
YPZ3_2104	PF12368	YPZ3_2104
YPZ3_2105	PF00892	EamA-like transporter family
YPZ3_2106	PF00765	Autoinducer synthetase
YPZ3_2107	PF00196	Bacterial regulatory proteins, luxR family
YPZ3_2107	PF03472	Autoinducer binding domain
YPZ3_2108	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_2108	PF03466	LysR substrate binding domain
YPZ3_2109	PF00083	Sugar (and other) transporter
YPZ3_2110	PF08714	Formaldehyde-activating enzyme (Fae)
YPZ3_2111	PF00248	Aldo/keto reductase family
YPZ3_2112	PF09618	CRISPR-associated protein (Cas_Csy4)
YPZ3_2113	PF09615	YPZ3_2113
YPZ3_2114	PF09614	YPZ3_2114
YPZ3_2115	PF09611	YPZ3_2115
YPZ3_2117	PF01867	CRISPR associated protein Cas1
YPZ3_2118	PF00924	Mechanosensitive ion channel
YPZ3_2121	PF08950	Protein of unknown function (DUF1861)
YPZ3_2122	PF04041	Domain of unknown function (DUF377)
YPZ3_2123	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2124	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2125	PF13416	Bacterial extracellular solute-binding protein
YPZ3_2126	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_2126	PF13377	Periplasmic binding protein-like domain
YPZ3_2127	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YPZ3_2127	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YPZ3_2127	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YPZ3_2127	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YPZ3_2128	PF00005	ABC transporter
YPZ3_2128	PF08402	TOBE domain
YPZ3_2131	PF04829	YPZ3_2131
YPZ3_2132	PF10004	YPZ3_2132
YPZ3_2133	PF04829	YPZ3_2133
YPZ3_2133	PF05594	YPZ3_2133
YPZ3_2133	PF05860	haemagglutination activity domain
YPZ3_2133	PF13332	YPZ3_2133
YPZ3_2134	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPZ3_2134	PF08479	POTRA domain, ShlB-type
YPZ3_2134	PF17287	YPZ3_2134
YPZ3_2135	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPZ3_2135	PF00175	Oxidoreductase NAD-binding domain
YPZ3_2135	PF00970	Oxidoreductase FAD-binding domain
YPZ3_2136	PF00355	Rieske [2Fe-2S] domain
YPZ3_2136	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
YPZ3_2137	PF02028	BCCT family transporter
YPZ3_2138	PF00180	Isocitrate/isopropylmalate dehydrogenase
YPZ3_2139	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_2139	PF03466	LysR substrate binding domain
YPZ3_2140	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_2140	PF13407	Periplasmic binding protein domain
YPZ3_2141	PF02653	YPZ3_2141
YPZ3_2142	PF00005	ABC transporter
YPZ3_2143	PF13407	Periplasmic binding protein domain
YPZ3_2144	PF00107	Zinc-binding dehydrogenase
YPZ3_2144	PF08240	Alcohol dehydrogenase GroES-like domain
YPZ3_2145	PF16809	YPZ3_2145
YPZ3_2146	PF16809	YPZ3_2146
YPZ3_2147	PF01545	Cation efflux family
YPZ3_2148	PF13505	Outer membrane protein beta-barrel domain
YPZ3_2149	PF00892	EamA-like transporter family
YPZ3_2150	PF00583	Acetyltransferase (GNAT) family
YPZ3_2151	PF13649	Methyltransferase domain
YPZ3_2152	PF00210	Ferritin-like domain
YPZ3_2153	PF02698	DUF218 domain
YPZ3_2154	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPZ3_2155	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2156	PF00005	ABC transporter
YPZ3_2157	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPZ3_2157	PF08448	PAS fold
YPZ3_2157	PF13426	PAS domain
YPZ3_2158	PF00665	Integrase core domain
YPZ3_2158	PF02796	Helix-turn-helix domain of resolvase
YPZ3_2159	PF01695	IstB-like ATP binding protein
YPZ3_2160	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_2160	PF07730	Histidine kinase
YPZ3_2161	PF07690	Major Facilitator Superfamily
YPZ3_2162	PF05860	haemagglutination activity domain
YPZ3_2163	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPZ3_2163	PF08479	POTRA domain, ShlB-type
YPZ3_2163	PF17287	YPZ3_2163
YPZ3_2164	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPZ3_2165	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2166	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2166	PF12911	YPZ3_2166
YPZ3_2167	PF00005	ABC transporter
YPZ3_2167	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPZ3_2168	PF00005	ABC transporter
YPZ3_2168	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPZ3_2169	PF01270	Glycosyl hydrolases family 8
YPZ3_2170	PF00563	EAL domain
YPZ3_2170	PF00990	GGDEF domain
YPZ3_2170	PF17154	YPZ3_2170
YPZ3_2171	PF06178	Oligogalacturonate-specific porin protein (KdgM)
YPZ3_2172	PF06917	Periplasmic pectate lyase
YPZ3_2173	PF00754	F5/8 type C domain
YPZ3_2174	PF00375	Sodium:dicarboxylate symporter family
YPZ3_2175	PF00675	Insulinase (Peptidase family M16)
YPZ3_2175	PF05193	Peptidase M16 inactive domain
YPZ3_2176	PF00294	pfkB family carbohydrate kinase
YPZ3_2177	PF00563	EAL domain
YPZ3_2178	PF05170	YPZ3_2178
YPZ3_2179	PF02611	CDP-diacylglycerol pyrophosphatase
YPZ3_2180	PF03631	YPZ3_2180
YPZ3_2181	PF03212	Pertactin
YPZ3_2181	PF03797	Autotransporter beta-domain
YPZ3_2182	PF11692	YPZ3_2182
YPZ3_2183	PF06092	YPZ3_2183
YPZ3_2184	PF06092	YPZ3_2184
YPZ3_2185	PF02595	Glycerate kinase family
YPZ3_2186	PF02447	YPZ3_2186
YPZ3_2187	PF05651	YPZ3_2187
YPZ3_2187	PF13556	PucR C-terminal helix-turn-helix domain
YPZ3_2188	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPZ3_2188	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPZ3_2189	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
YPZ3_2190	PF01432	Peptidase family M3
YPZ3_2191	PF04445	Putative SAM-dependent methyltransferase
YPZ3_2192	PF08548	Peptidase M10 serralysin C terminal
YPZ3_2193	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
YPZ3_2193	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YPZ3_2194	PF00582	Universal stress protein family
YPZ3_2195	PF10625	YPZ3_2195
YPZ3_2196	PF01797	Transposase IS200 like
YPZ3_2197	PF01384	YPZ3_2197
YPZ3_2198	PF03486	HI0933-like protein
YPZ3_2199	PF00072	Response regulator receiver domain
YPZ3_2199	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_2199	PF00672	HAMP domain
YPZ3_2199	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_2199	PF12860	YPZ3_2199
YPZ3_2200	PF00005	ABC transporter
YPZ3_2201	PF02653	YPZ3_2201
YPZ3_2202	PF13407	Periplasmic binding protein domain
YPZ3_2203	PF07385	Protein of unknown function (DUF1498)
YPZ3_2204	PF01116	Fructose-bisphosphate aldolase class-II
YPZ3_2205	PF00294	pfkB family carbohydrate kinase
YPZ3_2206	PF00072	Response regulator receiver domain
YPZ3_2206	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_2207	PF02678	Pirin
YPZ3_2208	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_2208	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPZ3_2209	PF02447	YPZ3_2209
YPZ3_2210	PF01202	Shikimate kinase
YPZ3_2212	PF01914	YPZ3_2212
YPZ3_2213	PF01118	Semialdehyde dehydrogenase, NAD binding domain
YPZ3_2213	PF02774	Semialdehyde dehydrogenase, dimerisation domain
YPZ3_2214	PF01476	LysM domain
YPZ3_2214	PF02369	Bacterial Ig-like domain (group 1)
YPZ3_2214	PF11924	Protein of unknown function (DUF3442)
YPZ3_2215	PF06580	YPZ3_2215
YPZ3_2215	PF07694	5TMR of 5TMR-LYT
YPZ3_2216	PF00128	Alpha amylase, catalytic domain
YPZ3_2216	PF02806	Alpha amylase, C-terminal all-beta domain
YPZ3_2216	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
YPZ3_2217	PF00128	Alpha amylase, catalytic domain
YPZ3_2217	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
YPZ3_2218	PF00483	Nucleotidyl transferase
YPZ3_2219	PF00534	Glycosyl transferases group 1
YPZ3_2219	PF08323	Starch synthase catalytic domain
YPZ3_2220	PF00343	Carbohydrate phosphorylase
YPZ3_2221	PF01266	FAD dependent oxidoreductase
YPZ3_2221	PF16901	YPZ3_2221
YPZ3_2222	PF06092	YPZ3_2222
YPZ3_2223	PF00665	Integrase core domain
YPZ3_2223	PF13276	YPZ3_2223
YPZ3_2224	PF13518	Helix-turn-helix domain
YPZ3_2225	PF00665	Integrase core domain
YPZ3_2225	PF02796	Helix-turn-helix domain of resolvase
YPZ3_2226	PF01695	IstB-like ATP binding protein
YPZ3_2227	PF05971	Protein of unknown function (DUF890)
YPZ3_2228	PF00591	Glycosyl transferase family, a/b domain
YPZ3_2228	PF02885	Glycosyl transferase family, helical bundle domain
YPZ3_2229	PF00501	AMP-binding enzyme
YPZ3_2230	PF13378	Enolase C-terminal domain-like
YPZ3_2231	PF00378	Enoyl-CoA hydratase/isomerase family
YPZ3_2232	PF12697	Alpha/beta hydrolase family
YPZ3_2233	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPZ3_2233	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPZ3_2233	PF16582	YPZ3_2233
YPZ3_2234	PF00425	chorismate binding enzyme
YPZ3_2236	PF05957	YPZ3_2236
YPZ3_2237	PF00920	Dehydratase family
YPZ3_2238	PF03928	Domain of unknown function (DUF336)
YPZ3_2239	PF07690	Major Facilitator Superfamily
YPZ3_2240	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPZ3_2240	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPZ3_2241	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_2241	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPZ3_2242	PF02638	YPZ3_2242
YPZ3_2243	PF00106	short chain dehydrogenase
YPZ3_2244	PF01202	Shikimate kinase
YPZ3_2245	PF04074	Domain of unknown function (DUF386)
YPZ3_2247	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
YPZ3_2248	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
YPZ3_2249	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
YPZ3_2249	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
YPZ3_2250	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
YPZ3_2251	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
YPZ3_2252	PF12838	4Fe-4S dicluster domain
YPZ3_2253	PF00146	NADH dehydrogenase
YPZ3_2254	PF00384	Molybdopterin oxidoreductase
YPZ3_2254	PF01568	Molydopterin dinucleotide binding domain
YPZ3_2254	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPZ3_2254	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
YPZ3_2254	PF13510	2Fe-2S iron-sulfur cluster binding domain
YPZ3_2255	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
YPZ3_2255	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
YPZ3_2256	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
YPZ3_2257	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
YPZ3_2257	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
YPZ3_2258	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
YPZ3_2259	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YPZ3_2260	PF03466	LysR substrate binding domain
YPZ3_2261	PF00155	Aminotransferase class I and II
YPZ3_2262	PF13023	HD domain
YPZ3_2263	PF02080	TrkA-C domain
YPZ3_2263	PF03600	Citrate transporter
YPZ3_2264	PF13419	Haloacid dehalogenase-like hydrolase
YPZ3_2265	PF03887	YfbU domain
YPZ3_2266	PF04217	YPZ3_2266
YPZ3_2267	PF00871	Acetokinase family
YPZ3_2268	PF01515	Phosphate acetyl/butaryl transferase
YPZ3_2268	PF07085	DRTGG domain
YPZ3_2268	PF13500	AAA domain
YPZ3_2269	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_2269	PF13377	Periplasmic binding protein-like domain
YPZ3_2270	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPZ3_2271	PF00872	YPZ3_2271
YPZ3_2272	PF00912	Transglycosylase
YPZ3_2273	PF00207	Alpha-2-macroglobulin family
YPZ3_2273	PF01835	MG2 domain
YPZ3_2273	PF07703	Alpha-2-macroglobulin family N-terminal region
YPZ3_2273	PF11974	Alpha-2-macroglobulin MG1 domain
YPZ3_2274	PF07274	YPZ3_2274
YPZ3_2275	PF01380	SIS domain
YPZ3_2275	PF01418	Helix-turn-helix domain, rpiR family
YPZ3_2276	PF00171	Aldehyde dehydrogenase family
YPZ3_2277	PF00205	Thiamine pyrophosphate enzyme, central domain
YPZ3_2277	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPZ3_2277	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPZ3_2278	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPZ3_2279	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
YPZ3_2280	PF13407	Periplasmic binding protein domain
YPZ3_2281	PF00005	ABC transporter
YPZ3_2282	PF02653	YPZ3_2282
YPZ3_2283	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPZ3_2283	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
YPZ3_2284	PF00294	pfkB family carbohydrate kinase
YPZ3_2284	PF09863	Uncharacterized protein conserved in bacteria (DUF2090)
YPZ3_2285	PF01261	Xylose isomerase-like TIM barrel
YPZ3_2286	PF04962	KduI/IolB family
YPZ3_2288	PF00005	ABC transporter
YPZ3_2288	PF00664	ABC transporter transmembrane region
YPZ3_2290	PF00196	Bacterial regulatory proteins, luxR family
YPZ3_2292	PF02537	YPZ3_2292
YPZ3_2293	PF04055	Radical SAM superfamily
YPZ3_2293	PF16881	YPZ3_2293
YPZ3_2294	PF03099	Biotin/lipoate A/B protein ligase family
YPZ3_2295	PF00768	D-alanyl-D-alanine carboxypeptidase
YPZ3_2295	PF07943	Penicillin-binding protein 5, C-terminal domain
YPZ3_2296	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
YPZ3_2296	PF05036	Sporulation related domain
YPZ3_2297	PF01098	YPZ3_2297
YPZ3_2298	PF00905	Penicillin binding protein transpeptidase domain
YPZ3_2298	PF03717	Penicillin-binding Protein dimerisation domain
YPZ3_2299	PF02590	Predicted SPOUT methyltransferase
YPZ3_2300	PF02410	Oligomerisation domain
YPZ3_2301	PF01467	Cytidylyltransferase
YPZ3_2302	PF06144	DNA polymerase III, delta subunit
YPZ3_2302	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
YPZ3_2303	PF04390	Lipopolysaccharide-assembly
YPZ3_2304	PF00133	tRNA synthetases class I (I, L, M and V)
YPZ3_2304	PF08264	Anticodon-binding domain of tRNA
YPZ3_2304	PF13603	Leucyl-tRNA synthetase, Domain 2
YPZ3_2305	PF07295	YPZ3_2305
YPZ3_2306	PF00005	ABC transporter
YPZ3_2307	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2308	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2309	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPZ3_2310	PF00795	Carbon-nitrogen hydrolase
YPZ3_2311	PF00571	CBS domain
YPZ3_2311	PF03471	Transporter associated domain
YPZ3_2312	PF02130	Uncharacterized protein family UPF0054
YPZ3_2313	PF02562	PhoH-like protein
YPZ3_2314	PF00919	Uncharacterized protein family UPF0004
YPZ3_2314	PF01938	TRAM domain
YPZ3_2314	PF04055	Radical SAM superfamily
YPZ3_2315	PF01494	FAD binding domain
YPZ3_2316	PF00733	Asparagine synthase
YPZ3_2316	PF13537	Glutamine amidotransferase domain
YPZ3_2317	PF13242	HAD-hyrolase-like
YPZ3_2317	PF13344	Haloacid dehalogenase-like hydrolase
YPZ3_2318	PF00480	ROK family
YPZ3_2318	PF01047	MarR family
YPZ3_2319	PF01979	Amidohydrolase family
YPZ3_2320	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
YPZ3_2321	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
YPZ3_2321	PF00367	phosphotransferase system, EIIB
YPZ3_2321	PF02378	Phosphotransferase system, EIIC
YPZ3_2322	PF01797	Transposase IS200 like
YPZ3_2323	PF00749	tRNA synthetases class I (E and Q), catalytic domain
YPZ3_2323	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
YPZ3_2324	PF03573	outer membrane porin, OprD family
YPZ3_2325	PF03173	Putative carbohydrate binding domain
YPZ3_2326	PF00728	Glycosyl hydrolase family 20, catalytic domain
YPZ3_2326	PF02838	Glycosyl hydrolase family 20, domain 2
YPZ3_2326	PF03174	Chitobiase/beta-hexosaminidase C-terminal domain
YPZ3_2327	PF01475	Ferric uptake regulator family
YPZ3_2328	PF00258	Flavodoxin
YPZ3_2329	PF12697	Alpha/beta hydrolase family
YPZ3_2330	PF13356	Domain of unknown function (DUF4102)
YPZ3_2331	PF01695	IstB-like ATP binding protein
YPZ3_2332	PF00665	Integrase core domain
YPZ3_2332	PF02796	Helix-turn-helix domain of resolvase
YPZ3_2333	PF01522	Polysaccharide deacetylase
YPZ3_2334	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YPZ3_2335	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2336	PF00005	ABC transporter
YPZ3_2336	PF00571	CBS domain
YPZ3_2337	PF00268	Ribonucleotide reductase, small chain
YPZ3_2338	PF00317	Ribonucleotide reductase, all-alpha domain
YPZ3_2338	PF02867	Ribonucleotide reductase, barrel domain
YPZ3_2338	PF08343	Ribonucleotide reductase N-terminal
YPZ3_2339	PF07972	NrdI Flavodoxin like
YPZ3_2340	PF06392	YPZ3_2340
YPZ3_2341	PF09400	Protein of unknown function (DUF2002)
YPZ3_2342	PF06711	YPZ3_2342
YPZ3_2343	PF04899	YPZ3_2343
YPZ3_2344	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPZ3_2345	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2346	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2347	PF00005	ABC transporter
YPZ3_2348	PF00005	ABC transporter
YPZ3_2349	PF00547	Urease, gamma subunit
YPZ3_2350	PF00699	Urease beta subunit
YPZ3_2351	PF00449	Urease alpha-subunit, N-terminal domain
YPZ3_2351	PF01979	Amidohydrolase family
YPZ3_2352	PF02814	UreE urease accessory protein, N-terminal domain
YPZ3_2352	PF05194	UreE urease accessory protein, C-terminal domain
YPZ3_2353	PF01730	UreF
YPZ3_2354	PF02492	CobW/HypB/UreG, nucleotide-binding domain
YPZ3_2355	PF01774	UreD urease accessory protein
YPZ3_2356	PF03253	Urea transporter
YPZ3_2357	PF03824	YPZ3_2357
YPZ3_2358	PF06411	HdeA/HdeB family
YPZ3_2359	PF02254	TrkA-N domain
YPZ3_2359	PF07885	Ion channel
YPZ3_2360	PF02537	YPZ3_2360
YPZ3_2361	PF02537	YPZ3_2361
YPZ3_2362	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPZ3_2363	PF02378	Phosphotransferase system, EIIC
YPZ3_2364	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
YPZ3_2365	PF07883	Cupin domain
YPZ3_2365	PF12833	Helix-turn-helix domain
YPZ3_2366	PF04794	YdjC-like protein
YPZ3_2367	PF03925	SeqA protein
YPZ3_2367	PF17206	YPZ3_2367
YPZ3_2368	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YPZ3_2368	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YPZ3_2368	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YPZ3_2368	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YPZ3_2369	PF00892	EamA-like transporter family
YPZ3_2370	PF00072	Response regulator receiver domain
YPZ3_2370	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_2371	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_2371	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_2371	PF02702	Osmosensitive K+ channel His kinase sensor domain
YPZ3_2371	PF13492	GAF domain
YPZ3_2371	PF13493	Domain of unknown function (DUF4118)
YPZ3_2372	PF02669	YPZ3_2372
YPZ3_2373	PF00122	E1-E2 ATPase
YPZ3_2373	PF00702	haloacid dehalogenase-like hydrolase
YPZ3_2374	PF03814	YPZ3_2374
YPZ3_2375	PF08349	YPZ3_2375
YPZ3_2376	PF00875	DNA photolyase
YPZ3_2376	PF03441	FAD binding domain of DNA photolyase
YPZ3_2377	PF02112	YPZ3_2377
YPZ3_2378	PF01784	NIF3 (NGG1p interacting factor 3)
YPZ3_2379	PF02682	Allophanate hydrolase subunit 1
YPZ3_2380	PF02626	Allophanate hydrolase subunit 2
YPZ3_2381	PF03746	LamB/YcsF family
YPZ3_2382	PF06149	YPZ3_2382
YPZ3_2383	PF06166	YPZ3_2383
YPZ3_2384	PF01470	Pyroglutamyl peptidase
YPZ3_2385	PF03167	Uracil DNA glycosylase superfamily
YPZ3_2386	PF01228	Glycine radical
YPZ3_2387	PF11187	Protein of unknown function (DUF2974)
YPZ3_2389	PF00270	DEAD/DEAH box helicase
YPZ3_2389	PF00271	Helicase conserved C-terminal domain
YPZ3_2390	PF05175	Methyltransferase small domain
YPZ3_2391	PF00890	FAD binding domain
YPZ3_2391	PF02910	Fumarate reductase flavoprotein C-term
YPZ3_2392	PF04542	Sigma-70 region 2
YPZ3_2392	PF08281	Sigma-70, region 4
YPZ3_2393	PF03872	Anti sigma-E protein RseA, N-terminal domain
YPZ3_2393	PF03873	Anti sigma-E protein RseA, C-terminal domain
YPZ3_2394	PF03888	MucB/RseB family
YPZ3_2394	PF17188	YPZ3_2394
YPZ3_2395	PF04246	YPZ3_2395
YPZ3_2397	PF00009	Elongation factor Tu GTP binding domain
YPZ3_2397	PF00679	Elongation factor G C-terminus
YPZ3_2397	PF03144	Elongation factor Tu domain 2
YPZ3_2397	PF06421	GTP-binding protein LepA C-terminus
YPZ3_2398	PF00717	Peptidase S24-like
YPZ3_2398	PF10502	Signal peptidase, peptidase S26
YPZ3_2399	PF00035	Double-stranded RNA binding motif
YPZ3_2399	PF14622	Ribonuclease-III-like
YPZ3_2400	PF01926	50S ribosome-binding GTPase
YPZ3_2400	PF07650	KH domain
YPZ3_2401	PF02565	Recombination protein O C terminal
YPZ3_2401	PF11967	Recombination protein O N terminal
YPZ3_2402	PF00665	Integrase core domain
YPZ3_2402	PF02796	Helix-turn-helix domain of resolvase
YPZ3_2403	PF01695	IstB-like ATP binding protein
YPZ3_2404	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
YPZ3_2405	PF01648	4'-phosphopantetheinyl transferase superfamily
YPZ3_2406	PF01797	Transposase IS200 like
YPZ3_2407	PF01380	SIS domain
YPZ3_2407	PF01418	Helix-turn-helix domain, rpiR family
YPZ3_2408	PF01380	SIS domain
YPZ3_2409	PF12710	haloacid dehalogenase-like hydrolase
YPZ3_2410	PF14437	YPZ3_2410
YPZ3_2411	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPZ3_2411	PF01464	Transglycosylase SLT domain
YPZ3_2412	PF02769	AIR synthase related protein, C-terminal domain
YPZ3_2412	PF13507	CobB/CobQ-like glutamine amidotransferase domain
YPZ3_2415	PF01797	Transposase IS200 like
YPZ3_2416	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_2416	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_2417	PF13942	YPZ3_2417
YPZ3_2418	PF00072	Response regulator receiver domain
YPZ3_2418	PF00158	Sigma-54 interaction domain
YPZ3_2419	PF00795	Carbon-nitrogen hydrolase
YPZ3_2419	PF02540	NAD synthase
YPZ3_2420	PF00543	Nitrogen regulatory protein P-II
YPZ3_2421	PF14503	YhfZ C-terminal domain
YPZ3_2422	PF14502	Helix-turn-helix domain
YPZ3_2422	PF14503	YhfZ C-terminal domain
YPZ3_2423	PF00042	Globin
YPZ3_2423	PF00175	Oxidoreductase NAD-binding domain
YPZ3_2423	PF00970	Oxidoreductase FAD-binding domain
YPZ3_2424	PF00464	Serine hydroxymethyltransferase
YPZ3_2425	PF13505	Outer membrane protein beta-barrel domain
YPZ3_2426	PF12832	MFS_1 like family
YPZ3_2427	PF00874	PRD domain
YPZ3_2428	PF06226	YPZ3_2428
YPZ3_2429	PF03824	YPZ3_2429
YPZ3_2430	PF01797	Transposase IS200 like
YPZ3_2431	PF00459	Inositol monophosphatase family
YPZ3_2432	PF00588	SpoU rRNA Methylase family
YPZ3_2433	PF02082	Transcriptional regulator
YPZ3_2434	PF00266	Aminotransferase class-V
YPZ3_2435	PF01592	NifU-like N terminal domain
YPZ3_2436	PF00226	DnaJ domain
YPZ3_2436	PF07743	HSCB C-terminal oligomerisation domain
YPZ3_2437	PF00012	Hsp70 protein
YPZ3_2438	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPZ3_2439	PF00883	Cytosol aminopeptidase family, catalytic domain
YPZ3_2439	PF12404	YPZ3_2439
YPZ3_2440	PF07179	YPZ3_2440
YPZ3_2440	PF14581	YPZ3_2440
YPZ3_2441	PF03797	Autotransporter beta-domain
YPZ3_2442	PF03212	Pertactin
YPZ3_2442	PF03797	Autotransporter beta-domain
YPZ3_2443	PF03212	Pertactin
YPZ3_2443	PF03797	Autotransporter beta-domain
YPZ3_2444	PF00030	Beta/Gamma crystallin
YPZ3_2444	PF08964	Beta/Gamma crystallin
YPZ3_2444	PF09101	Exotoxin A binding
YPZ3_2445	PF00334	Nucleoside diphosphate kinase
YPZ3_2446	PF04055	Radical SAM superfamily
YPZ3_2447	PF13181	Tetratricopeptide repeat
YPZ3_2447	PF13431	Tetratricopeptide repeat
YPZ3_2448	PF13413	Helix-turn-helix domain
YPZ3_2448	PF13464	YPZ3_2448
YPZ3_2449	PF04551	GcpE protein
YPZ3_2450	PF03129	Anticodon binding domain
YPZ3_2450	PF13393	Histidyl-tRNA synthetase
YPZ3_2451	PF09976	Tetratricopeptide repeat
YPZ3_2452	PF13360	PQQ-like domain
YPZ3_2453	PF01926	50S ribosome-binding GTPase
YPZ3_2453	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
YPZ3_2454	PF03547	YPZ3_2454
YPZ3_2455	PF02601	YPZ3_2455
YPZ3_2455	PF13742	YPZ3_2455
YPZ3_2456	PF00478	IMP dehydrogenase / GMP reductase domain
YPZ3_2456	PF00571	CBS domain
YPZ3_2457	PF00117	Glutamine amidotransferase class-I
YPZ3_2457	PF00958	GMP synthase C terminal domain
YPZ3_2457	PF02540	NAD synthase
YPZ3_2458	PF01797	Transposase IS200 like
YPZ3_2459	PF05638	Protein of unknown function (DUF796)
YPZ3_2460	PF06836	YPZ3_2460
YPZ3_2461	PF06836	YPZ3_2461
YPZ3_2463	PF00872	YPZ3_2463
YPZ3_2464	PF06092	YPZ3_2464
YPZ3_2465	PF08543	Phosphomethylpyrimidine kinase
YPZ3_2467	PF08816	Inhibitor of vertebrate lysozyme (Ivy)
YPZ3_2468	PF00781	Diacylglycerol kinase catalytic domain
YPZ3_2469	PF01136	YPZ3_2469
YPZ3_2469	PF16325	YPZ3_2469
YPZ3_2470	PF07411	Domain of unknown function (DUF1508)
YPZ3_2471	PF00072	Response regulator receiver domain
YPZ3_2471	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_2472	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_2472	PF00672	HAMP domain
YPZ3_2473	PF07690	Major Facilitator Superfamily
YPZ3_2474	PF00873	AcrB/AcrD/AcrF family
YPZ3_2475	PF00873	AcrB/AcrD/AcrF family
YPZ3_2476	PF13437	HlyD family secretion protein
YPZ3_2476	PF13533	Biotin-lipoyl like
YPZ3_2477	PF00005	ABC transporter
YPZ3_2477	PF08402	TOBE domain
YPZ3_2478	PF00155	Aminotransferase class I and II
YPZ3_2478	PF00392	Bacterial regulatory proteins, gntR family
YPZ3_2479	PF00202	Aminotransferase class-III
YPZ3_2480	PF13416	Bacterial extracellular solute-binding protein
YPZ3_2481	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2482	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2483	PF00012	Hsp70 protein
YPZ3_2484	PF00571	CBS domain
YPZ3_2484	PF01769	Divalent cation transporter
YPZ3_2484	PF03448	MgtE intracellular N domain
YPZ3_2485	PF02541	Ppx/GppA phosphatase family
YPZ3_2486	PF02503	Polyphosphate kinase middle domain
YPZ3_2486	PF13089	Polyphosphate kinase N-terminal domain
YPZ3_2486	PF13090	Polyphosphate kinase C-terminal domain
YPZ3_2487	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2488	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2489	PF00005	ABC transporter
YPZ3_2490	PF03692	YPZ3_2490
YPZ3_2492	PF13302	Acetyltransferase (GNAT) domain
YPZ3_2493	PF00551	Formyl transferase
YPZ3_2494	PF00586	AIR synthase related protein, N-terminal domain
YPZ3_2494	PF02769	AIR synthase related protein, C-terminal domain
YPZ3_2495	PF14681	Uracil phosphoribosyltransferase
YPZ3_2496	PF01797	Transposase IS200 like
YPZ3_2497	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YPZ3_2497	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
YPZ3_2499	PF01066	CDP-alcohol phosphatidyltransferase
YPZ3_2500	PF01148	Cytidylyltransferase family
YPZ3_2501	PF01553	Acyltransferase
YPZ3_2502	PF12146	Putative lysophospholipase
YPZ3_2502	PF12147	YPZ3_2502
YPZ3_2503	PF00782	Dual specificity phosphatase, catalytic domain
YPZ3_2503	PF14378	YPZ3_2503
YPZ3_2506	PF01695	IstB-like ATP binding protein
YPZ3_2507	PF00665	Integrase core domain
YPZ3_2507	PF02796	Helix-turn-helix domain of resolvase
YPZ3_2508	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_2508	PF03466	LysR substrate binding domain
YPZ3_2509	PF00248	Aldo/keto reductase family
YPZ3_2510	PF00248	Aldo/keto reductase family
YPZ3_2512	PF00933	Glycosyl hydrolase family 3 N terminal domain
YPZ3_2512	PF01915	Glycosyl hydrolase family 3 C-terminal domain
YPZ3_2512	PF14310	Fibronectin type III-like domain
YPZ3_2513	PF14345	YPZ3_2513
YPZ3_2514	PF09925	YPZ3_2514
YPZ3_2514	PF14351	YPZ3_2514
YPZ3_2515	PF00872	YPZ3_2515
YPZ3_2517	PF11459	YPZ3_2517
YPZ3_2517	PF17194	YPZ3_2517
YPZ3_2518	PF03212	Pertactin
YPZ3_2518	PF03797	Autotransporter beta-domain
YPZ3_2519	PF05638	Protein of unknown function (DUF796)
YPZ3_2521	PF00905	Penicillin binding protein transpeptidase domain
YPZ3_2521	PF06832	YPZ3_2521
YPZ3_2522	PF00872	YPZ3_2522
YPZ3_2523	PF03611	YPZ3_2523
YPZ3_2524	PF00293	NUDIX domain
YPZ3_2525	PF12850	Calcineurin-like phosphoesterase superfamily domain
YPZ3_2526	PF00563	EAL domain
YPZ3_2527	PF01370	NAD dependent epimerase/dehydratase family
YPZ3_2527	PF08338	Domain of unknown function (DUF1731)
YPZ3_2528	PF00005	ABC transporter
YPZ3_2529	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2530	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2531	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPZ3_2532	PF02441	Flavoprotein
YPZ3_2533	PF00156	Phosphoribosyl transferase domain
YPZ3_2533	PF13522	Glutamine amidotransferase domain
YPZ3_2534	PF02674	YPZ3_2534
YPZ3_2535	PF05036	Sporulation related domain
YPZ3_2536	PF02875	Mur ligase family, glutamate ligase domain
YPZ3_2536	PF08245	Mur ligase middle domain
YPZ3_2537	PF01039	Carboxyl transferase domain
YPZ3_2538	PF09335	YPZ3_2538
YPZ3_2539	PF01416	tRNA pseudouridine synthase
YPZ3_2540	PF01118	Semialdehyde dehydrogenase, NAD binding domain
YPZ3_2540	PF02774	Semialdehyde dehydrogenase, dimerisation domain
YPZ3_2541	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPZ3_2541	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPZ3_2541	PF11890	Domain of unknown function (DUF3410)
YPZ3_2542	PF12833	Helix-turn-helix domain
YPZ3_2543	PF00892	EamA-like transporter family
YPZ3_2545	PF00419	Fimbrial protein
YPZ3_2546	PF01177	Asp/Glu/Hydantoin racemase
YPZ3_2547	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPZ3_2547	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPZ3_2548	PF01266	FAD dependent oxidoreductase
YPZ3_2548	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
YPZ3_2549	PF04315	YPZ3_2549
YPZ3_2550	PF01925	YPZ3_2550
YPZ3_2551	PF03411	Penicillin-insensitive murein endopeptidase
YPZ3_2552	PF01264	Chorismate synthase
YPZ3_2553	PF05175	Methyltransferase small domain
YPZ3_2554	PF01713	Smr domain
YPZ3_2555	PF00300	Histidine phosphatase superfamily (branch 1)
YPZ3_2556	PF00378	Enoyl-CoA hydratase/isomerase family
YPZ3_2556	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
YPZ3_2556	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YPZ3_2557	PF00108	Thiolase, N-terminal domain
YPZ3_2557	PF02803	Thiolase, C-terminal domain
YPZ3_2558	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
YPZ3_2559	PF04333	YPZ3_2559
YPZ3_2560	PF14559	Tetratricopeptide repeat
YPZ3_2561	PF03918	Cytochrome C biogenesis protein
YPZ3_2562	PF08534	Redoxin
YPZ3_2563	PF01578	YPZ3_2563
YPZ3_2563	PF16327	YPZ3_2563
YPZ3_2564	PF03100	CcmE
YPZ3_2565	PF04995	YPZ3_2565
YPZ3_2566	PF01578	YPZ3_2566
YPZ3_2567	PF03379	YPZ3_2567
YPZ3_2568	PF00005	ABC transporter
YPZ3_2570	PF04011	LemA family
YPZ3_2571	PF09972	YPZ3_2571
YPZ3_2572	PF03831	PhnA protein
YPZ3_2572	PF08274	PhnA Zinc-Ribbon
YPZ3_2574	PF04965	Gene 25-like lysozyme
YPZ3_2575	PF07024	ImpE protein
YPZ3_2577	PF05954	Phage late control gene D protein (GPD)
YPZ3_2578	PF06744	YPZ3_2578
YPZ3_2578	PF06761	YPZ3_2578
YPZ3_2578	PF14331	YPZ3_2578
YPZ3_2579	PF00691	OmpA family
YPZ3_2580	PF01695	IstB-like ATP binding protein
YPZ3_2581	PF00665	Integrase core domain
YPZ3_2581	PF02796	Helix-turn-helix domain of resolvase
YPZ3_2582	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPZ3_2583	PF05936	YPZ3_2583
YPZ3_2584	PF12790	Type VI secretion lipoprotein
YPZ3_2585	PF05638	Protein of unknown function (DUF796)
YPZ3_2586	PF05943	YPZ3_2586
YPZ3_2587	PF05591	YPZ3_2587
YPZ3_2588	PF00419	Fimbrial protein
YPZ3_2589	PF00577	Outer membrane usher protein
YPZ3_2589	PF13953	PapC C-terminal domain
YPZ3_2590	PF00872	YPZ3_2590
YPZ3_2591	PF00577	Outer membrane usher protein
YPZ3_2591	PF13954	PapC N-terminal domain
YPZ3_2592	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPZ3_2592	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPZ3_2593	PF16970	YPZ3_2593
YPZ3_2594	PF00004	ATPase family associated with various cellular activities (AAA)
YPZ3_2594	PF07724	AAA domain (Cdc48 subfamily)
YPZ3_2594	PF10431	C-terminal, D2-small domain, of ClpB protein
YPZ3_2595	PF05947	YPZ3_2595
YPZ3_2596	PF06996	YPZ3_2596
YPZ3_2597	PF06812	YPZ3_2597
YPZ3_2598	PF00419	Fimbrial protein
YPZ3_2599	PF11397	YPZ3_2599
YPZ3_2601	PF00691	OmpA family
YPZ3_2602	PF08786	Domain of unknown function (DUF1795)
YPZ3_2603	PF00196	Bacterial regulatory proteins, luxR family
YPZ3_2604	PF13406	Transglycosylase SLT domain
YPZ3_2605	PF13343	Bacterial extracellular solute-binding protein
YPZ3_2606	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2607	PF00005	ABC transporter
YPZ3_2608	PF09900	YPZ3_2608
YPZ3_2609	PF13988	YPZ3_2609
YPZ3_2610	PF00384	Molybdopterin oxidoreductase
YPZ3_2610	PF01568	Molydopterin dinucleotide binding domain
YPZ3_2610	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPZ3_2611	PF12800	4Fe-4S binding domain
YPZ3_2611	PF13247	4Fe-4S dicluster domain
YPZ3_2612	PF04976	YPZ3_2612
YPZ3_2613	PF02613	Nitrate reductase delta subunit
YPZ3_2614	PF00037	4Fe-4S binding domain
YPZ3_2614	PF12838	4Fe-4S dicluster domain
YPZ3_2615	PF05643	Putative bacterial lipoprotein (DUF799)
YPZ3_2616	PF16068	YPZ3_2616
YPZ3_2617	PF03783	Curli production assembly/transport component CsgG
YPZ3_2618	PF15970	YPZ3_2618
YPZ3_2619	PF01292	Prokaryotic cytochrome b561
YPZ3_2620	PF00155	Aminotransferase class I and II
YPZ3_2621	PF07350	Protein of unknown function (DUF1479)
YPZ3_2622	PF02685	Glucokinase
YPZ3_2623	PF05232	YPZ3_2623
YPZ3_2624	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_2624	PF03466	LysR substrate binding domain
YPZ3_2625	PF00248	Aldo/keto reductase family
YPZ3_2626	PF10697	YPZ3_2626
YPZ3_2627	PF01566	YPZ3_2627
YPZ3_2628	PF01773	Na+ dependent nucleoside transporter N-terminus
YPZ3_2628	PF07662	Na+ dependent nucleoside transporter C-terminus
YPZ3_2628	PF07670	Nucleoside recognition
YPZ3_2629	PF00749	tRNA synthetases class I (E and Q), catalytic domain
YPZ3_2630	PF01797	Transposase IS200 like
YPZ3_2631	PF06042	Bacterial protein of unknown function (DUF925)
YPZ3_2632	PF14282	YPZ3_2632
YPZ3_2633	PF00533	BRCA1 C Terminus (BRCT) domain
YPZ3_2633	PF01653	NAD-dependent DNA ligase adenylation domain
YPZ3_2633	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
YPZ3_2633	PF03120	NAD-dependent DNA ligase OB-fold domain
YPZ3_2633	PF12826	Helix-hairpin-helix motif
YPZ3_2633	PF14520	Helix-hairpin-helix domain
YPZ3_2634	PF04354	ZipA, C-terminal FtsZ-binding domain
YPZ3_2635	PF07264	Etoposide-induced protein 2
YPZ3_2636	PF00291	Pyridoxal-phosphate dependent enzyme
YPZ3_2637	PF00391	PEP-utilising enzyme, mobile domain
YPZ3_2637	PF02896	PEP-utilising enzyme, TIM barrel domain
YPZ3_2637	PF05524	PEP-utilising enzyme, N-terminal
YPZ3_2638	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
YPZ3_2639	PF01797	Transposase IS200 like
YPZ3_2640	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_2640	PF00672	HAMP domain
YPZ3_2640	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_2641	PF00072	Response regulator receiver domain
YPZ3_2641	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_2642	PF16576	YPZ3_2642
YPZ3_2643	PF00005	ABC transporter
YPZ3_2643	PF02687	YPZ3_2643
YPZ3_2643	PF12704	MacB-like periplasmic core domain
YPZ3_2644	PF00581	Rhodanese-like domain
YPZ3_2644	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPZ3_2644	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPZ3_2646	PF00557	Metallopeptidase family M24
YPZ3_2646	PF01321	Creatinase/Prolidase N-terminal domain
YPZ3_2647	PF00155	Aminotransferase class I and II
YPZ3_2648	PF00092	von Willebrand factor type A domain
YPZ3_2649	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_2649	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_2650	PF00072	Response regulator receiver domain
YPZ3_2650	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_2652	PF00291	Pyridoxal-phosphate dependent enzyme
YPZ3_2653	PF00005	ABC transporter
YPZ3_2654	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2655	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2656	PF13531	Bacterial extracellular solute-binding protein
YPZ3_2657	PF07690	Major Facilitator Superfamily
YPZ3_2658	PF01380	SIS domain
YPZ3_2658	PF01418	Helix-turn-helix domain, rpiR family
YPZ3_2659	PF04074	Domain of unknown function (DUF386)
YPZ3_2660	PF00480	ROK family
YPZ3_2661	PF12468	Type III secretion system leucine rich repeat protein
YPZ3_2661	PF13855	Leucine rich repeat
YPZ3_2663	PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
YPZ3_2664	PF00701	Dihydrodipicolinate synthetase family
YPZ3_2665	PF04261	Dyp-type peroxidase family
YPZ3_2666	PF06572	Protein of unknown function (DUF1131)
YPZ3_2667	PF04076	Bacterial OB fold (BOF) protein
YPZ3_2668	PF03212	Pertactin
YPZ3_2668	PF03797	Autotransporter beta-domain
YPZ3_2670	PF00583	Acetyltransferase (GNAT) family
YPZ3_2671	PF01218	Coproporphyrinogen III oxidase
YPZ3_2672	PF02639	YPZ3_2672
YPZ3_2673	PF00390	Malic enzyme, N-terminal domain
YPZ3_2673	PF01515	Phosphate acetyl/butaryl transferase
YPZ3_2673	PF03949	Malic enzyme, NAD binding domain
YPZ3_2674	PF00293	NUDIX domain
YPZ3_2675	PF03264	NapC/NirT cytochrome c family, N-terminal region
YPZ3_2676	PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
YPZ3_2677	PF00384	Molybdopterin oxidoreductase
YPZ3_2677	PF01568	Molydopterin dinucleotide binding domain
YPZ3_2677	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPZ3_2677	PF10518	TAT (twin-arginine translocation) pathway signal sequence
YPZ3_2678	PF12838	4Fe-4S dicluster domain
YPZ3_2678	PF13187	4Fe-4S dicluster domain
YPZ3_2679	PF00072	Response regulator receiver domain
YPZ3_2679	PF00196	Bacterial regulatory proteins, luxR family
YPZ3_2680	PF00873	AcrB/AcrD/AcrF family
YPZ3_2682	PF04307	YPZ3_2682
YPZ3_2683	PF04055	Radical SAM superfamily
YPZ3_2683	PF13353	4Fe-4S single cluster domain
YPZ3_2684	PF00884	Sulfatase
YPZ3_2685	PF00005	ABC transporter
YPZ3_2686	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2687	PF13416	Bacterial extracellular solute-binding protein
YPZ3_2688	PF12688	Tetratrico peptide repeat
YPZ3_2689	PF03960	ArsC family
YPZ3_2690	PF01546	Peptidase family M20/M25/M40
YPZ3_2690	PF07687	Peptidase dimerisation domain
YPZ3_2691	PF02557	D-alanyl-D-alanine carboxypeptidase
YPZ3_2692	PF05127	Helicase
YPZ3_2692	PF08351	Domain of unknown function (DUF1726)
YPZ3_2692	PF13718	GNAT acetyltransferase 2
YPZ3_2692	PF17176	YPZ3_2692
YPZ3_2693	PF04284	YPZ3_2693
YPZ3_2694	PF04228	YPZ3_2694
YPZ3_2695	PF01259	SAICAR synthetase
YPZ3_2696	PF01797	Transposase IS200 like
YPZ3_2697	PF06804	NlpB/DapX lipoprotein
YPZ3_2698	PF00701	Dihydrodipicolinate synthetase family
YPZ3_2699	PF13740	ACT domain
YPZ3_2700	PF00578	AhpC/TSA family
YPZ3_2702	PF01594	YPZ3_2702
YPZ3_2703	PF01435	Peptidase family M48
YPZ3_2703	PF07720	Tetratricopeptide repeat
YPZ3_2703	PF14559	Tetratricopeptide repeat
YPZ3_2704	PF03960	ArsC family
YPZ3_2705	PF00308	Bacterial dnaA  protein
YPZ3_2706	PF01797	Transposase IS200 like
YPZ3_2707	PF01406	tRNA synthetases class I (C) catalytic domain
YPZ3_2707	PF09190	DALR domain
YPZ3_2708	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YPZ3_2709	PF00149	Calcineurin-like phosphoesterase
YPZ3_2710	PF00731	AIR carboxylase
YPZ3_2711	PF02222	ATP-grasp domain
YPZ3_2712	PF02687	YPZ3_2712
YPZ3_2713	PF00005	ABC transporter
YPZ3_2714	PF13472	GDSL-like Lipase/Acylhydrolase family
YPZ3_2715	PF00106	short chain dehydrogenase
YPZ3_2716	PF00085	Thioredoxin
YPZ3_2716	PF14559	Tetratricopeptide repeat
YPZ3_2716	PF14561	Tetratricopeptide repeat
YPZ3_2717	PF01145	SPFH domain / Band 7 family
YPZ3_2718	PF01957	NfeD-like C-terminal, partner-binding
YPZ3_2719	PF13411	MerR HTH family regulatory protein
YPZ3_2720	PF00122	E1-E2 ATPase
YPZ3_2720	PF00403	Heavy-metal-associated domain
YPZ3_2720	PF00702	haloacid dehalogenase-like hydrolase
YPZ3_2721	PF01963	YPZ3_2721
YPZ3_2722	PF04073	Aminoacyl-tRNA editing domain
YPZ3_2723	PF02872	5'-nucleotidase, C-terminal domain
YPZ3_2724	PF00149	Calcineurin-like phosphoesterase
YPZ3_2725	PF07690	Major Facilitator Superfamily
YPZ3_2726	PF00999	Sodium/hydrogen exchanger family
YPZ3_2726	PF02254	TrkA-N domain
YPZ3_2727	PF00294	pfkB family carbohydrate kinase
YPZ3_2729	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YPZ3_2729	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YPZ3_2729	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YPZ3_2729	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YPZ3_2730	PF00535	Glycosyl transferase family 2
YPZ3_2731	PF00483	Nucleotidyl transferase
YPZ3_2731	PF01050	Mannose-6-phosphate isomerase
YPZ3_2732	PF01370	NAD dependent epimerase/dehydratase family
YPZ3_2733	PF16363	YPZ3_2733
YPZ3_2734	PF16363	YPZ3_2734
YPZ3_2735	PF00534	Glycosyl transferases group 1
YPZ3_2735	PF13439	Glycosyltransferase Family 4
YPZ3_2737	PF13692	Glycosyl transferases group 1
YPZ3_2738	PF00535	Glycosyl transferase family 2
YPZ3_2740	PF13450	NAD(P)-binding Rossmann-like domain
YPZ3_2741	PF01370	NAD dependent epimerase/dehydratase family
YPZ3_2742	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
YPZ3_2743	PF16363	YPZ3_2743
YPZ3_2744	PF00483	Nucleotidyl transferase
YPZ3_2745	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPZ3_2745	PF00175	Oxidoreductase NAD-binding domain
YPZ3_2745	PF00970	Oxidoreductase FAD-binding domain
YPZ3_2746	PF00762	Ferrochelatase
YPZ3_2747	PF00406	Adenylate kinase
YPZ3_2747	PF05191	Adenylate kinase, active site lid
YPZ3_2748	PF00183	Hsp90 protein
YPZ3_2748	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_2749	PF02132	RecR protein
YPZ3_2749	PF13662	Toprim domain
YPZ3_2750	PF02575	YbaB/EbfC DNA-binding family
YPZ3_2751	PF12168	YPZ3_2751
YPZ3_2751	PF12169	DNA polymerase III subunits gamma and tau domain III
YPZ3_2751	PF12170	DNA polymerase III tau subunit V interacting with alpha
YPZ3_2751	PF13177	DNA polymerase III, delta subunit
YPZ3_2752	PF00156	Phosphoribosyl transferase domain
YPZ3_2753	PF07445	Primosomal replication protein priB and priC
YPZ3_2754	PF00924	Mechanosensitive ion channel
YPZ3_2754	PF12794	YPZ3_2754
YPZ3_2754	PF12795	YPZ3_2754
YPZ3_2755	PF02635	DsrE/DsrF-like family
YPZ3_2756	PF00440	Bacterial regulatory proteins, tetR family
YPZ3_2756	PF08361	MAATS-type transcriptional repressor, C-terminal region
YPZ3_2757	PF00529	HlyD family secretion protein
YPZ3_2757	PF16576	YPZ3_2757
YPZ3_2758	PF00873	AcrB/AcrD/AcrF family
YPZ3_2760	PF10757	YPZ3_2760
YPZ3_2761	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
YPZ3_2762	PF09619	Type III secretion system lipoprotein chaperone (YscW)
YPZ3_2763	PF13622	Thioesterase-like superfamily
YPZ3_2764	PF00909	Ammonium Transporter Family
YPZ3_2765	PF00543	Nitrogen regulatory protein P-II
YPZ3_2766	PF00005	ABC transporter
YPZ3_2766	PF00664	ABC transporter transmembrane region
YPZ3_2767	PF00005	ABC transporter
YPZ3_2767	PF00664	ABC transporter transmembrane region
YPZ3_2768	PF01037	AsnC family
YPZ3_2768	PF13412	Winged helix-turn-helix DNA-binding
YPZ3_2769	PF00291	Pyridoxal-phosphate dependent enzyme
YPZ3_2770	PF08282	haloacid dehalogenase-like hydrolase
YPZ3_2771	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPZ3_2771	PF12793	YPZ3_2771
YPZ3_2772	PF06508	Queuosine biosynthesis protein QueC
YPZ3_2773	PF13279	Thioesterase-like superfamily
YPZ3_2774	PF12836	Helix-hairpin-helix motif
YPZ3_2775	PF13145	PPIC-type PPIASE domain
YPZ3_2775	PF13624	SurA N-terminal domain
YPZ3_2776	PF00004	ATPase family associated with various cellular activities (AAA)
YPZ3_2776	PF02190	ATP-dependent protease La (LON) domain
YPZ3_2776	PF05362	Lon protease (S16) C-terminal proteolytic domain
YPZ3_2777	PF06689	ClpX C4-type zinc finger
YPZ3_2777	PF07724	AAA domain (Cdc48 subfamily)
YPZ3_2777	PF10431	C-terminal, D2-small domain, of ClpB protein
YPZ3_2778	PF00574	Clp protease
YPZ3_2779	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPZ3_2779	PF05697	Bacterial trigger factor protein (TF)
YPZ3_2779	PF05698	Bacterial trigger factor protein (TF) C-terminus
YPZ3_2780	PF01722	BolA-like protein
YPZ3_2781	PF03923	YPZ3_2781
YPZ3_2781	PF08139	YPZ3_2781
YPZ3_2782	PF07690	Major Facilitator Superfamily
YPZ3_2783	PF03502	Nucleoside-specific channel-forming protein, Tsx
YPZ3_2784	PF06481	COX Aromatic Rich Motif
YPZ3_2785	PF00115	Cytochrome C and Quinol oxidase polypeptide I
YPZ3_2786	PF00510	Cytochrome c oxidase subunit III
YPZ3_2787	PF03626	YPZ3_2787
YPZ3_2788	PF01040	UbiA prenyltransferase family
YPZ3_2789	PF07690	Major Facilitator Superfamily
YPZ3_2790	PF04461	Protein of unknown function (DUF520)
YPZ3_2791	PF02558	Ketopantoate reductase PanE/ApbA
YPZ3_2791	PF08546	Ketopantoate reductase PanE/ApbA C terminal
YPZ3_2792	PF01965	DJ-1/PfpI family
YPZ3_2793	PF02568	Thiamine biosynthesis protein (ThiI)
YPZ3_2793	PF02926	THUMP domain
YPZ3_2794	PF00348	Polyprenyl synthetase
YPZ3_2795	PF02779	Transketolase, pyrimidine binding domain
YPZ3_2795	PF02780	Transketolase, C-terminal domain
YPZ3_2795	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
YPZ3_2796	PF01797	Transposase IS200 like
YPZ3_2797	PF04608	Phosphatidylglycerophosphatase A
YPZ3_2798	PF00586	AIR synthase related protein, N-terminal domain
YPZ3_2798	PF02769	AIR synthase related protein, C-terminal domain
YPZ3_2799	PF01029	NusB family
YPZ3_2800	PF00885	6,7-dimethyl-8-ribityllumazine synthase
YPZ3_2801	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
YPZ3_2801	PF01872	RibD C-terminal domain
YPZ3_2802	PF03477	ATP cone domain
YPZ3_2805	PF01797	Transposase IS200 like
YPZ3_2806	PF02355	Protein export membrane protein
YPZ3_2806	PF07549	SecD/SecF GG Motif
YPZ3_2807	PF02355	Protein export membrane protein
YPZ3_2807	PF07549	SecD/SecF GG Motif
YPZ3_2807	PF13721	SecD export protein N-terminal TM region
YPZ3_2808	PF02699	Preprotein translocase subunit
YPZ3_2809	PF01702	Queuine tRNA-ribosyltransferase
YPZ3_2810	PF02547	Queuosine biosynthesis protein
YPZ3_2811	PF04336	YPZ3_2811
YPZ3_2812	PF00578	AhpC/TSA family
YPZ3_2812	PF10417	C-terminal domain of 1-Cys peroxiredoxin
YPZ3_2813	PF01797	Transposase IS200 like
YPZ3_2814	PF01019	Gamma-glutamyltranspeptidase
YPZ3_2815	PF00106	short chain dehydrogenase
YPZ3_2816	PF00128	Alpha amylase, catalytic domain
YPZ3_2816	PF02903	Alpha amylase, N-terminal ig-like domain
YPZ3_2817	PF00324	Amino acid permease
YPZ3_2818	PF05525	YPZ3_2818
YPZ3_2819	PF12849	PBP superfamily domain
YPZ3_2820	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_2820	PF00989	PAS fold
YPZ3_2820	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_2820	PF11808	YPZ3_2820
YPZ3_2821	PF00072	Response regulator receiver domain
YPZ3_2821	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_2822	PF00149	Calcineurin-like phosphoesterase
YPZ3_2822	PF12320	Type 5 capsule protein repressor C-terminal domain
YPZ3_2823	PF13476	AAA domain
YPZ3_2823	PF13558	Putative exonuclease SbcCD, C subunit
YPZ3_2824	PF00480	ROK family
YPZ3_2825	PF04381	Putative exonuclease, RdgC
YPZ3_2826	PF01202	Shikimate kinase
YPZ3_2827	PF00398	Ribosomal RNA adenine dimethylase
YPZ3_2828	PF08241	Methyltransferase domain
YPZ3_2829	PF07238	PilZ domain
YPZ3_2829	PF07317	Flagellar regulator YcgR
YPZ3_2830	PF00171	Aldehyde dehydrogenase family
YPZ3_2831	PF00696	Amino acid kinase family
YPZ3_2831	PF01472	PUA domain
YPZ3_2832	PF07417	Transcriptional regulator Crl
YPZ3_2833	PF06500	Alpha/beta hydrolase of unknown function (DUF1100)
YPZ3_2834	PF00156	Phosphoribosyl transferase domain
YPZ3_2835	PF03067	Chitin binding domain
YPZ3_2837	PF01546	Peptidase family M20/M25/M40
YPZ3_2837	PF07687	Peptidase dimerisation domain
YPZ3_2838	PF00817	impB/mucB/samB family
YPZ3_2838	PF11798	IMS family HHH motif
YPZ3_2838	PF11799	impB/mucB/samB family C-terminal domain
YPZ3_2839	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPZ3_2840	PF02424	ApbE family
YPZ3_2841	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPZ3_2841	PF00175	Oxidoreductase NAD-binding domain
YPZ3_2841	PF00970	Oxidoreductase FAD-binding domain
YPZ3_2842	PF02508	YPZ3_2842
YPZ3_2843	PF02508	YPZ3_2843
YPZ3_2844	PF04205	FMN-binding domain
YPZ3_2845	PF03116	YPZ3_2845
YPZ3_2846	PF05896	YPZ3_2846
YPZ3_2846	PF11973	YPZ3_2846
YPZ3_2847	PF03734	L,D-transpeptidase catalytic domain
YPZ3_2848	PF13230	Glutamine amidotransferases class-II
YPZ3_2849	PF13580	SIS domain
YPZ3_2850	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
YPZ3_2850	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
YPZ3_2850	PF09317	YPZ3_2850
YPZ3_2851	PF03333	Adhesin biosynthesis transcription regulatory protein
YPZ3_2853	PF05860	haemagglutination activity domain
YPZ3_2853	PF13018	YPZ3_2853
YPZ3_2854	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPZ3_2854	PF08479	POTRA domain, ShlB-type
YPZ3_2855	PF01546	Peptidase family M20/M25/M40
YPZ3_2857	PF00665	Integrase core domain
YPZ3_2857	PF02796	Helix-turn-helix domain of resolvase
YPZ3_2858	PF01695	IstB-like ATP binding protein
YPZ3_2859	PF00266	Aminotransferase class-V
YPZ3_2860	PF00005	ABC transporter
YPZ3_2861	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2862	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_2863	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPZ3_2864	PF01380	SIS domain
YPZ3_2864	PF01418	Helix-turn-helix domain, rpiR family
YPZ3_2865	PF01425	Amidase
YPZ3_2866	PF11533	Protein of unknown function (DUF3225)
YPZ3_2867	PF07690	Major Facilitator Superfamily
YPZ3_2868	PF03591	YPZ3_2868
YPZ3_2869	PF05437	YPZ3_2869
YPZ3_2870	PF01047	MarR family
YPZ3_2871	PF00529	HlyD family secretion protein
YPZ3_2871	PF16576	YPZ3_2871
YPZ3_2872	PF07690	Major Facilitator Superfamily
YPZ3_2873	PF00588	SpoU rRNA Methylase family
YPZ3_2873	PF08032	RNA 2'-O ribose methyltransferase substrate binding
YPZ3_2874	PF00085	Thioredoxin
YPZ3_2875	PF03942	YPZ3_2875
YPZ3_2876	PF00583	Acetyltransferase (GNAT) family
YPZ3_2876	PF13380	CoA binding domain
YPZ3_2876	PF13549	ATP-grasp domain
YPZ3_2876	PF13607	Succinyl-CoA ligase like flavodoxin domain
YPZ3_2877	PF13091	PLD-like domain
YPZ3_2878	PF10043	YPZ3_2878
YPZ3_2880	PF00004	ATPase family associated with various cellular activities (AAA)
YPZ3_2880	PF02861	Clp amino terminal domain
YPZ3_2880	PF07724	AAA domain (Cdc48 subfamily)
YPZ3_2880	PF10431	C-terminal, D2-small domain, of ClpB protein
YPZ3_2881	PF02578	Multi-copper polyphenol oxidoreductase laccase
YPZ3_2882	PF00849	RNA pseudouridylate synthase
YPZ3_2882	PF01479	S4 domain
YPZ3_2883	PF13525	Outer membrane lipoprotein
YPZ3_2884	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
YPZ3_2885	PF01797	Transposase IS200 like
YPZ3_2886	PF00800	Prephenate dehydratase
YPZ3_2886	PF01817	Chorismate mutase type II
YPZ3_2887	PF00665	Integrase core domain
YPZ3_2887	PF02796	Helix-turn-helix domain of resolvase
YPZ3_2888	PF01695	IstB-like ATP binding protein
YPZ3_2889	PF00800	Prephenate dehydratase
YPZ3_2890	PF01817	Chorismate mutase type II
YPZ3_2890	PF02153	Prephenate dehydrogenase
YPZ3_2891	PF00793	DAHP synthetase I family
YPZ3_2892	PF00072	Response regulator receiver domain
YPZ3_2892	PF04397	LytTr DNA-binding domain
YPZ3_2893	PF03605	YPZ3_2893
YPZ3_2894	PF03605	YPZ3_2894
YPZ3_2895	PF04338	Protein of unknown function, DUF481
YPZ3_2896	PF01797	Transposase IS200 like
YPZ3_2897	PF01245	Ribosomal protein L19
YPZ3_2898	PF01746	tRNA (Guanine-1)-methyltransferase
YPZ3_2899	PF01782	RimM N-terminal domain
YPZ3_2899	PF05239	PRC-barrel domain
YPZ3_2900	PF00448	SRP54-type protein, GTPase domain
YPZ3_2900	PF02881	SRP54-type protein, helical bundle domain
YPZ3_2900	PF02978	Signal peptide binding domain
YPZ3_2901	PF01578	YPZ3_2901
YPZ3_2902	PF00571	CBS domain
YPZ3_2902	PF01595	YPZ3_2902
YPZ3_2902	PF03471	Transporter associated domain
YPZ3_2903	PF01797	Transposase IS200 like
YPZ3_2904	PF02664	S-Ribosylhomocysteinase (LuxS)
YPZ3_2905	PF04262	Glutamate-cysteine ligase
YPZ3_2907	PF13419	Haloacid dehalogenase-like hydrolase
YPZ3_2908	PF01411	tRNA synthetases class II (A)
YPZ3_2908	PF02272	DHHA1 domain
YPZ3_2908	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
YPZ3_2909	PF02631	RecX family
YPZ3_2910	PF00154	recA bacterial DNA recombination protein
YPZ3_2911	PF02464	Competence-damaged protein
YPZ3_2912	PF07690	Major Facilitator Superfamily
YPZ3_2913	PF01047	MarR family
YPZ3_2913	PF04198	Putative sugar-binding domain
YPZ3_2914	PF02952	L-fucose isomerase, C-terminal domain
YPZ3_2915	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPZ3_2915	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPZ3_2916	PF02779	Transketolase, pyrimidine binding domain
YPZ3_2916	PF02780	Transketolase, C-terminal domain
YPZ3_2917	PF00456	Transketolase, thiamine diphosphate binding domain
YPZ3_2918	PF02653	YPZ3_2918
YPZ3_2919	PF00005	ABC transporter
YPZ3_2920	PF10054	Predicted periplasmic lipoprotein (DUF2291)
YPZ3_2921	PF13407	Periplasmic binding protein domain
YPZ3_2922	PF00141	Peroxidase
YPZ3_2923	PF07361	Cytochrome b562
YPZ3_2924	PF02613	Nitrate reductase delta subunit
YPZ3_2925	PF04976	YPZ3_2925
YPZ3_2926	PF12800	4Fe-4S binding domain
YPZ3_2926	PF13247	4Fe-4S dicluster domain
YPZ3_2927	PF00384	Molybdopterin oxidoreductase
YPZ3_2927	PF01568	Molydopterin dinucleotide binding domain
YPZ3_2927	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPZ3_2928	PF00596	Class II Aldolase and Adducin N-terminal domain
YPZ3_2929	PF00455	YPZ3_2929
YPZ3_2929	PF08220	DeoR-like helix-turn-helix domain
YPZ3_2930	PF13407	Periplasmic binding protein domain
YPZ3_2931	PF01797	Transposase IS200 like
YPZ3_2932	PF00005	ABC transporter
YPZ3_2933	PF02653	YPZ3_2933
YPZ3_2934	PF02653	YPZ3_2934
YPZ3_2935	PF01261	Xylose isomerase-like TIM barrel
YPZ3_2936	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPZ3_2936	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPZ3_2937	PF05681	YPZ3_2937
YPZ3_2937	PF05683	Fumarase C-terminus
YPZ3_2938	PF00557	Metallopeptidase family M24
YPZ3_2939	PF07906	YPZ3_2939
YPZ3_2940	PF00593	TonB dependent receptor
YPZ3_2941	PF00593	TonB dependent receptor
YPZ3_2941	PF07715	TonB-dependent Receptor Plug Domain
YPZ3_2942	PF00034	Cytochrome c
YPZ3_2942	PF03150	Di-haem cytochrome c peroxidase
YPZ3_2942	PF14376	YPZ3_2942
YPZ3_2943	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPZ3_2944	PF01022	Bacterial regulatory protein, arsR family
YPZ3_2945	PF02040	YPZ3_2945
YPZ3_2946	PF04198	Putative sugar-binding domain
YPZ3_2946	PF13518	Helix-turn-helix domain
YPZ3_2947	PF04198	Putative sugar-binding domain
YPZ3_2948	PF02734	DAK2 domain
YPZ3_2949	PF02733	Dak1 domain
YPZ3_2950	PF13561	Enoyl-(Acyl carrier protein) reductase
YPZ3_2951	PF00107	Zinc-binding dehydrogenase
YPZ3_2951	PF08240	Alcohol dehydrogenase GroES-like domain
YPZ3_2952	PF02502	Ribose/Galactose Isomerase
YPZ3_2953	PF00488	MutS domain V
YPZ3_2953	PF01624	MutS domain I
YPZ3_2953	PF05188	MutS domain II
YPZ3_2953	PF05190	MutS family domain IV
YPZ3_2953	PF05192	MutS domain III
YPZ3_2954	PF00140	Sigma-70 factor, region 1
YPZ3_2954	PF04539	Sigma-70 region 3
YPZ3_2954	PF04542	Sigma-70 region 2
YPZ3_2954	PF04545	Sigma-70, region 4
YPZ3_2955	PF01476	LysM domain
YPZ3_2955	PF01551	Peptidase family M23
YPZ3_2956	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
YPZ3_2957	PF01975	Survival protein SurE
YPZ3_2958	PF01142	tRNA pseudouridine synthase D (TruD)
YPZ3_2959	PF02542	YgbB family
YPZ3_2960	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
YPZ3_2961	PF04977	Septum formation initiator
YPZ3_2962	PF12084	YPZ3_2962
YPZ3_2963	PF01583	Adenylylsulphate kinase
YPZ3_2964	PF00009	Elongation factor Tu GTP binding domain
YPZ3_2965	PF01507	Phosphoadenosine phosphosulfate reductase family
YPZ3_2966	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
YPZ3_2966	PF10414	Sirohaem synthase dimerisation region
YPZ3_2966	PF13241	Putative NAD(P)-binding
YPZ3_2966	PF14824	Sirohaem biosynthesis protein central
YPZ3_2967	PF15919	YPZ3_2967
YPZ3_2968	PF01507	Phosphoadenosine phosphosulfate reductase family
YPZ3_2969	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
YPZ3_2969	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
YPZ3_2970	PF00175	Oxidoreductase NAD-binding domain
YPZ3_2970	PF00258	Flavodoxin
YPZ3_2970	PF00667	FAD binding domain
YPZ3_2971	PF01242	6-pyruvoyl tetrahydropterin synthase
YPZ3_2972	PF04055	Radical SAM superfamily
YPZ3_2972	PF13394	4Fe-4S single cluster domain
YPZ3_2973	PF00080	Copper/zinc superoxide dismutase (SODC)
YPZ3_2974	PF00113	Enolase, C-terminal TIM barrel domain
YPZ3_2974	PF03952	Enolase, N-terminal domain
YPZ3_2975	PF00117	Glutamine amidotransferase class-I
YPZ3_2975	PF06418	CTP synthase N-terminus
YPZ3_2976	PF03819	MazG nucleotide pyrophosphohydrolase domain
YPZ3_2977	PF02824	TGS domain
YPZ3_2977	PF04607	Region found in RelA / SpoT proteins
YPZ3_2977	PF13291	ACT domain
YPZ3_2977	PF13328	HD domain
YPZ3_2978	PF00072	Response regulator receiver domain
YPZ3_2978	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_2978	PF01627	Hpt domain
YPZ3_2978	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_2978	PF09984	YPZ3_2978
YPZ3_2979	PF00595	PDZ domain (Also known as DHR or GLGF)
YPZ3_2979	PF13180	PDZ domain
YPZ3_2979	PF13365	Trypsin-like peptidase domain
YPZ3_2980	PF01966	HD domain
YPZ3_2980	PF13286	Phosphohydrolase-associated domain
YPZ3_2981	PF01048	Phosphorylase superfamily
YPZ3_2982	PF01497	Periplasmic binding protein
YPZ3_2983	PF03458	YPZ3_2983
YPZ3_2984	PF01521	Iron-sulphur cluster biosynthesis
YPZ3_2985	PF00654	Voltage gated chloride channel
YPZ3_2986	PF00202	Aminotransferase class-III
YPZ3_2987	PF01032	FecCD transport family
YPZ3_2988	PF01497	Periplasmic binding protein
YPZ3_2989	PF00005	ABC transporter
YPZ3_2990	PF00905	Penicillin binding protein transpeptidase domain
YPZ3_2990	PF00912	Transglycosylase
YPZ3_2990	PF14812	YPZ3_2990
YPZ3_2990	PF14814	Bifunctional transglycosylase second domain
YPZ3_2991	PF00270	DEAD/DEAH box helicase
YPZ3_2991	PF00271	Helicase conserved C-terminal domain
YPZ3_2991	PF04408	Helicase associated domain (HA2)
YPZ3_2991	PF08482	YPZ3_2991
YPZ3_2992	PF02834	LigT like Phosphoesterase
YPZ3_2993	PF03749	Sugar fermentation stimulation protein
YPZ3_2994	PF01258	Prokaryotic dksA/traR C4-type zinc finger
YPZ3_2995	PF00749	tRNA synthetases class I (E and Q), catalytic domain
YPZ3_2996	PF01743	Poly A polymerase head domain
YPZ3_2996	PF12626	Polymerase A arginine-rich C-terminus
YPZ3_2996	PF12627	Probable RNA and SrmB- binding site of polymerase A
YPZ3_2997	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
YPZ3_2998	PF02548	Ketopantoate hydroxymethyltransferase
YPZ3_2999	PF02569	Pantoate-beta-alanine ligase
YPZ3_3000	PF02261	Aspartate decarboxylase
YPZ3_3001	PF01522	Polysaccharide deacetylase
YPZ3_3002	PF01061	YPZ3_3002
YPZ3_3003	PF00005	ABC transporter
YPZ3_3004	PF00484	Carbonic anhydrase
YPZ3_3005	PF00156	Phosphoribosyl transferase domain
YPZ3_3006	PF00394	Multicopper oxidase
YPZ3_3006	PF07731	Multicopper oxidase
YPZ3_3006	PF07732	Multicopper oxidase
YPZ3_3006	PF10518	TAT (twin-arginine translocation) pathway signal sequence
YPZ3_3007	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
YPZ3_3008	PF01564	Spermine/spermidine synthase
YPZ3_3008	PF17284	YPZ3_3008
YPZ3_3009	PF02675	S-adenosylmethionine decarboxylase
YPZ3_3010	PF00892	EamA-like transporter family
YPZ3_3011	PF06062	YPZ3_3011
YPZ3_3012	PF00330	Aconitase family (aconitate hydratase)
YPZ3_3012	PF06434	Aconitate hydratase 2 N-terminus
YPZ3_3012	PF11791	Aconitate B N-terminal domain
YPZ3_3013	PF01797	Transposase IS200 like
YPZ3_3014	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPZ3_3014	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPZ3_3015	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
YPZ3_3015	PF00364	Biotin-requiring enzyme
YPZ3_3015	PF02817	e3 binding domain
YPZ3_3016	PF00456	Transketolase, thiamine diphosphate binding domain
YPZ3_3017	PF00392	Bacterial regulatory proteins, gntR family
YPZ3_3017	PF07729	FCD domain
YPZ3_3018	PF00324	Amino acid permease
YPZ3_3019	PF17113	YPZ3_3019
YPZ3_3020	PF01510	N-acetylmuramoyl-L-alanine amidase
YPZ3_3021	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
YPZ3_3021	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
YPZ3_3022	PF07963	Prokaryotic N-terminal methylation motif
YPZ3_3023	PF00437	Type II/IV secretion system protein
YPZ3_3024	PF00482	Type II secretion system (T2SS), protein F
YPZ3_3025	PF00478	IMP dehydrogenase / GMP reductase domain
YPZ3_3026	PF01121	Dephospho-CoA kinase
YPZ3_3027	PF07072	Protein of unknown function (DUF1342)
YPZ3_3028	PF01797	Transposase IS200 like
YPZ3_3029	PF00665	Integrase core domain
YPZ3_3029	PF02796	Helix-turn-helix domain of resolvase
YPZ3_3030	PF01695	IstB-like ATP binding protein
YPZ3_3031	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_3032	PF03235	YPZ3_3032
YPZ3_3032	PF07510	YPZ3_3032
YPZ3_3033	PF00589	Phage integrase family
YPZ3_3033	PF13356	Domain of unknown function (DUF4102)
YPZ3_3034	PF03739	YPZ3_3034
YPZ3_3035	PF03739	YPZ3_3035
YPZ3_3036	PF00883	Cytosol aminopeptidase family, catalytic domain
YPZ3_3036	PF02789	Cytosol aminopeptidase family, N-terminal domain
YPZ3_3037	PF04364	DNA polymerase III chi subunit, HolC
YPZ3_3038	PF00133	tRNA synthetases class I (I, L, M and V)
YPZ3_3038	PF08264	Anticodon-binding domain of tRNA
YPZ3_3038	PF10458	Valyl tRNA synthetase tRNA binding arm
YPZ3_3039	PF00583	Acetyltransferase (GNAT) family
YPZ3_3040	PF06877	Regulator of ribonuclease activity B
YPZ3_3041	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
YPZ3_3041	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
YPZ3_3042	PF04074	Domain of unknown function (DUF386)
YPZ3_3043	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPZ3_3045	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_3046	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_3046	PF12911	YPZ3_3046
YPZ3_3047	PF00005	ABC transporter
YPZ3_3048	PF00005	ABC transporter
YPZ3_3049	PF03477	ATP cone domain
YPZ3_3049	PF13597	Anaerobic ribonucleoside-triphosphate reductase
YPZ3_3050	PF13353	4Fe-4S single cluster domain
YPZ3_3051	PF00392	Bacterial regulatory proteins, gntR family
YPZ3_3051	PF07702	UTRA domain
YPZ3_3052	PF06754	YPZ3_3052
YPZ3_3053	PF05845	Bacterial phosphonate metabolism protein (PhnH)
YPZ3_3054	PF05861	YPZ3_3054
YPZ3_3055	PF06007	YPZ3_3055
YPZ3_3056	PF00005	ABC transporter
YPZ3_3057	PF00005	ABC transporter
YPZ3_3058	PF07969	Amidohydrolase family
YPZ3_3059	PF13238	AAA domain
YPZ3_3060	PF12706	Beta-lactamase superfamily domain
YPZ3_3063	PF05426	Alginate lyase
YPZ3_3064	PF00005	ABC transporter
YPZ3_3064	PF08402	TOBE domain
YPZ3_3065	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_3066	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_3067	PF01547	Bacterial extracellular solute-binding protein
YPZ3_3068	PF05426	Alginate lyase
YPZ3_3069	PF05426	Alginate lyase
YPZ3_3069	PF07940	Heparinase II/III-like protein
YPZ3_3070	PF00583	Acetyltransferase (GNAT) family
YPZ3_3071	PF02036	SCP-2 sterol transfer family
YPZ3_3072	PF01136	YPZ3_3072
YPZ3_3073	PF01136	YPZ3_3073
YPZ3_3074	PF02321	Outer membrane efflux protein
YPZ3_3075	PF00873	AcrB/AcrD/AcrF family
YPZ3_3076	PF16576	YPZ3_3076
YPZ3_3077	PF00296	Luciferase-like monooxygenase
YPZ3_3078	PF01381	Helix-turn-helix
YPZ3_3079	PF00270	DEAD/DEAH box helicase
YPZ3_3079	PF00271	Helicase conserved C-terminal domain
YPZ3_3079	PF03880	DbpA RNA binding domain
YPZ3_3079	PF12343	YPZ3_3079
YPZ3_3080	PF07719	Tetratricopeptide repeat
YPZ3_3080	PF13181	Tetratricopeptide repeat
YPZ3_3081	PF00013	KH domain
YPZ3_3081	PF00575	S1 RNA binding domain
YPZ3_3081	PF01138	3' exoribonuclease family, domain 1
YPZ3_3081	PF03725	3' exoribonuclease family, domain 2
YPZ3_3081	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
YPZ3_3082	PF00665	Integrase core domain
YPZ3_3082	PF13276	YPZ3_3082
YPZ3_3083	PF13518	Helix-turn-helix domain
YPZ3_3084	PF05947	YPZ3_3084
YPZ3_3085	PF06996	YPZ3_3085
YPZ3_3087	PF12790	Type VI secretion lipoprotein
YPZ3_3088	PF05936	YPZ3_3088
YPZ3_3089	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPZ3_3090	PF00004	ATPase family associated with various cellular activities (AAA)
YPZ3_3090	PF07724	AAA domain (Cdc48 subfamily)
YPZ3_3090	PF10431	C-terminal, D2-small domain, of ClpB protein
YPZ3_3091	PF02954	Bacterial regulatory protein, Fis family
YPZ3_3092	PF11319	YPZ3_3092
YPZ3_3093	PF06812	YPZ3_3093
YPZ3_3093	PF16989	YPZ3_3093
YPZ3_3094	PF06744	YPZ3_3094
YPZ3_3094	PF06761	YPZ3_3094
YPZ3_3094	PF14331	YPZ3_3094
YPZ3_3095	PF06812	YPZ3_3095
YPZ3_3096	PF12486	YPZ3_3096
YPZ3_3097	PF05954	Phage late control gene D protein (GPD)
YPZ3_3098	PF08786	Domain of unknown function (DUF1795)
YPZ3_3099	PF05488	PAAR motif
YPZ3_3099	PF05593	YPZ3_3099
YPZ3_3100	PF03527	YPZ3_3100
YPZ3_3100	PF14414	YPZ3_3100
YPZ3_3101	PF09346	SMI1 / KNR4 family (SUKH-1)
YPZ3_3102	PF01381	Helix-turn-helix
YPZ3_3103	PF05954	Phage late control gene D protein (GPD)
YPZ3_3104	PF08786	Domain of unknown function (DUF1795)
YPZ3_3105	PF03527	YPZ3_3105
YPZ3_3105	PF05488	PAAR motif
YPZ3_3105	PF05593	YPZ3_3105
YPZ3_3107	PF01261	Xylose isomerase-like TIM barrel
YPZ3_3108	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPZ3_3109	PF02311	AraC-like ligand binding domain
YPZ3_3109	PF12833	Helix-turn-helix domain
YPZ3_3110	PF05025	RbsD / FucU transport protein family
YPZ3_3111	PF00294	pfkB family carbohydrate kinase
YPZ3_3112	PF01791	DeoC/LacD family aldolase
YPZ3_3113	PF03358	NADPH-dependent FMN reductase
YPZ3_3114	PF09084	NMT1/THI5 like
YPZ3_3115	PF00296	Luciferase-like monooxygenase
YPZ3_3116	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_3117	PF00005	ABC transporter
YPZ3_3118	PF00860	Permease family
YPZ3_3119	PF00999	Sodium/hydrogen exchanger family
YPZ3_3121	PF03279	YPZ3_3121
YPZ3_3122	PF13407	Periplasmic binding protein domain
YPZ3_3123	PF00005	ABC transporter
YPZ3_3124	PF02653	YPZ3_3124
YPZ3_3125	PF02653	YPZ3_3125
YPZ3_3126	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPZ3_3126	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPZ3_3127	PF01380	SIS domain
YPZ3_3128	PF02798	Glutathione S-transferase, N-terminal domain
YPZ3_3128	PF13410	Glutathione S-transferase, C-terminal domain
YPZ3_3129	PF13449	Esterase-like activity of phytase
YPZ3_3131	PF01797	Transposase IS200 like
YPZ3_3132	PF05433	YPZ3_3132
YPZ3_3133	PF00753	Metallo-beta-lactamase superfamily
YPZ3_3134	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
YPZ3_3134	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
YPZ3_3135	PF02627	Carboxymuconolactone decarboxylase family
YPZ3_3136	PF07690	Major Facilitator Superfamily
YPZ3_3137	PF00392	Bacterial regulatory proteins, gntR family
YPZ3_3137	PF07729	FCD domain
YPZ3_3139	PF01207	Dihydrouridine synthase (Dus)
YPZ3_3140	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
YPZ3_3141	PF00474	Sodium:solute symporter family
YPZ3_3142	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
YPZ3_3142	PF02785	Biotin carboxylase C-terminal domain
YPZ3_3142	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
YPZ3_3143	PF00364	Biotin-requiring enzyme
YPZ3_3144	PF01220	Dehydroquinase class II
YPZ3_3145	PF01794	YPZ3_3145
YPZ3_3146	PF00174	Oxidoreductase molybdopterin binding domain
YPZ3_3147	PF00107	Zinc-binding dehydrogenase
YPZ3_3147	PF08240	Alcohol dehydrogenase GroES-like domain
YPZ3_3148	PF00563	EAL domain
YPZ3_3148	PF00990	GGDEF domain
YPZ3_3148	PF17157	YPZ3_3148
YPZ3_3149	PF06723	MreB/Mbl protein
YPZ3_3150	PF04085	rod shape-determining protein MreC
YPZ3_3151	PF04093	YPZ3_3151
YPZ3_3152	PF02545	Maf-like protein
YPZ3_3153	PF00575	S1 RNA binding domain
YPZ3_3153	PF10150	Ribonuclease E/G family
YPZ3_3154	PF13116	YPZ3_3154
YPZ3_3154	PF13502	YPZ3_3154
YPZ3_3155	PF00795	Carbon-nitrogen hydrolase
YPZ3_3156	PF01523	Putative modulator of DNA gyrase
YPZ3_3158	PF00782	Dual specificity phosphatase, catalytic domain
YPZ3_3159	PF10828	YPZ3_3159
YPZ3_3160	PF13539	D-alanyl-D-alanine carboxypeptidase
YPZ3_3161	PF16083	YPZ3_3161
YPZ3_3162	PF03534	Salmonella virulence plasmid 65kDa B protein
YPZ3_3162	PF12255	Insecticide toxin TcdB middle/C-terminal region
YPZ3_3162	PF12256	Insecticide toxin TcdB middle/N-terminal region
YPZ3_3165	PF03538	Salmonella virulence plasmid 28
YPZ3_3167	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_3167	PF03466	LysR substrate binding domain
YPZ3_3168	PF13437	HlyD family secretion protein
YPZ3_3168	PF13533	Biotin-lipoyl like
YPZ3_3169	PF04632	YPZ3_3169
YPZ3_3170	PF00171	Aldehyde dehydrogenase family
YPZ3_3171	PF00171	Aldehyde dehydrogenase family
YPZ3_3172	PF00545	ribonuclease
YPZ3_3173	PF04751	Protein of unknown function (DUF615)
YPZ3_3174	PF01523	Putative modulator of DNA gyrase
YPZ3_3176	PF07361	Cytochrome b562
YPZ3_3177	PF01272	Transcription elongation factor, GreA/GreB, C-term
YPZ3_3177	PF14760	Rnk N-terminus
YPZ3_3178	PF00128	Alpha amylase, catalytic domain
YPZ3_3178	PF11941	Domain of unknown function (DUF3459)
YPZ3_3179	PF00367	phosphotransferase system, EIIB
YPZ3_3179	PF02378	Phosphotransferase system, EIIC
YPZ3_3180	PF00356	Bacterial regulatory proteins, lacI family
YPZ3_3180	PF13377	Periplasmic binding protein-like domain
YPZ3_3181	PF16743	YPZ3_3181
YPZ3_3182	PF01042	Endoribonuclease L-PSP
YPZ3_3183	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
YPZ3_3183	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
YPZ3_3184	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
YPZ3_3184	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
YPZ3_3185	PF03668	YPZ3_3185
YPZ3_3186	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPZ3_3187	PF00309	YPZ3_3187
YPZ3_3187	PF04552	Sigma-54, DNA binding domain
YPZ3_3187	PF04963	Sigma-54 factor, core binding domain
YPZ3_3188	PF00005	ABC transporter
YPZ3_3188	PF12399	Branched-chain amino acid ATP-binding cassette transporter
YPZ3_3189	PF03968	OstA-like protein
YPZ3_3190	PF06835	Lipopolysaccharide-assembly, LptC-related
YPZ3_3191	PF08282	haloacid dehalogenase-like hydrolase
YPZ3_3192	PF00571	CBS domain
YPZ3_3192	PF01380	SIS domain
YPZ3_3193	PF01699	Sodium/calcium exchanger protein
YPZ3_3194	PF00005	ABC transporter
YPZ3_3195	PF02405	YPZ3_3195
YPZ3_3196	PF02470	YPZ3_3196
YPZ3_3197	PF05494	Toluene tolerance, Ttg2
YPZ3_3198	PF13466	STAS domain
YPZ3_3199	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
YPZ3_3200	PF13180	PDZ domain
YPZ3_3200	PF13365	Trypsin-like peptidase domain
YPZ3_3201	PF01797	Transposase IS200 like
YPZ3_3202	PF00595	PDZ domain (Also known as DHR or GLGF)
YPZ3_3202	PF13180	PDZ domain
YPZ3_3202	PF13365	Trypsin-like peptidase domain
YPZ3_3203	PF06295	YPZ3_3203
YPZ3_3204	PF03969	AFG1-like ATPase
YPZ3_3205	PF00572	Ribosomal protein L13
YPZ3_3206	PF00380	Ribosomal protein S9/S16
YPZ3_3207	PF00043	Glutathione S-transferase, C-terminal domain
YPZ3_3207	PF02798	Glutathione S-transferase, N-terminal domain
YPZ3_3208	PF04386	Stringent starvation protein B
YPZ3_3210	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPZ3_3210	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
YPZ3_3211	PF00310	Glutamine amidotransferases class-II
YPZ3_3211	PF01493	GXGXG motif
YPZ3_3211	PF01645	Conserved region in glutamate synthase
YPZ3_3211	PF04898	Glutamate synthase central domain
YPZ3_3212	PF04055	Radical SAM superfamily
YPZ3_3212	PF16199	YPZ3_3212
YPZ3_3213	PF00072	Response regulator receiver domain
YPZ3_3213	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_3213	PF00989	PAS fold
YPZ3_3213	PF01627	Hpt domain
YPZ3_3213	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_3215	PF00912	Transglycosylase
YPZ3_3216	PF04972	BON domain
YPZ3_3217	PF13580	SIS domain
YPZ3_3218	PF02021	Uncharacterised protein family UPF0102
YPZ3_3219	PF04348	LppC putative lipoprotein
YPZ3_3220	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
YPZ3_3221	PF02678	Pirin
YPZ3_3222	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_3222	PF03466	LysR substrate binding domain
YPZ3_3223	PF13409	Glutathione S-transferase, N-terminal domain
YPZ3_3223	PF13410	Glutathione S-transferase, C-terminal domain
YPZ3_3224	PF01695	IstB-like ATP binding protein
YPZ3_3225	PF00665	Integrase core domain
YPZ3_3225	PF02796	Helix-turn-helix domain of resolvase
YPZ3_3226	PF00326	Prolyl oligopeptidase family
YPZ3_3227	PF01250	Ribosomal protein S6
YPZ3_3228	PF01281	Ribosomal protein L9, N-terminal domain
YPZ3_3228	PF03948	Ribosomal protein L9, C-terminal domain
YPZ3_3229	PF01797	Transposase IS200 like
YPZ3_3230	PF12582	YPZ3_3230
YPZ3_3231	PF04225	Opacity-associated protein A LysM-like domain
YPZ3_3231	PF08525	YPZ3_3231
YPZ3_3232	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPZ3_3232	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
YPZ3_3233	PF01814	Hemerythrin HHE cation binding domain
YPZ3_3233	PF04405	YPZ3_3233
YPZ3_3234	PF00149	Calcineurin-like phosphoesterase
YPZ3_3234	PF02872	5'-nucleotidase, C-terminal domain
YPZ3_3235	PF00459	Inositol monophosphatase family
YPZ3_3236	PF09695	YPZ3_3236
YPZ3_3237	PF00571	CBS domain
YPZ3_3237	PF01595	YPZ3_3237
YPZ3_3237	PF03471	Transporter associated domain
YPZ3_3238	PF01625	Peptide methionine sulfoxide reductase
YPZ3_3239	PF01103	Surface antigen
YPZ3_3239	PF07244	Surface antigen variable number repeat
YPZ3_3239	PF17243	YPZ3_3239
YPZ3_3240	PF04357	YPZ3_3240
YPZ3_3241	PF06094	AIG2-like family
YPZ3_3242	PF00719	Inorganic pyrophosphatase
YPZ3_3243	PF00316	Fructose-1-6-bisphosphatase
YPZ3_3244	PF01225	Mur ligase family, catalytic domain
YPZ3_3244	PF02875	Mur ligase family, glutamate ligase domain
YPZ3_3244	PF08245	Mur ligase middle domain
YPZ3_3245	PF01316	Arginine repressor, DNA binding domain
YPZ3_3245	PF02863	Arginine repressor, C-terminal domain
YPZ3_3246	PF00056	lactate/malate dehydrogenase, NAD binding domain
YPZ3_3246	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
YPZ3_3247	PF02316	Mu DNA-binding domain
YPZ3_3248	PF00348	Polyprenyl synthetase
YPZ3_3249	PF00829	Ribosomal prokaryotic L21 protein
YPZ3_3250	PF00892	EamA-like transporter family
YPZ3_3251	PF01018	GTP1/OBG
YPZ3_3251	PF01926	50S ribosome-binding GTPase
YPZ3_3252	PF00512	His Kinase A (phospho-acceptor) domain
YPZ3_3252	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_3253	PF00072	Response regulator receiver domain
YPZ3_3253	PF00486	Transcriptional regulatory protein, C terminal
YPZ3_3254	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
YPZ3_3255	PF01272	Transcription elongation factor, GreA/GreB, C-term
YPZ3_3255	PF03449	Transcription elongation factor, N-terminal
YPZ3_3256	PF01728	FtsJ-like methyltransferase
YPZ3_3257	PF00004	ATPase family associated with various cellular activities (AAA)
YPZ3_3257	PF01434	Peptidase family M41
YPZ3_3258	PF00809	Pterin binding enzyme
YPZ3_3259	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YPZ3_3259	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YPZ3_3259	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YPZ3_3259	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YPZ3_3260	PF02576	Uncharacterised BCR, YhbC family COG0779
YPZ3_3260	PF17384	YPZ3_3260
YPZ3_3261	PF08529	NusA N-terminal domain
YPZ3_3261	PF13184	NusA-like KH domain
YPZ3_3261	PF14520	Helix-hairpin-helix domain
YPZ3_3262	PF00009	Elongation factor Tu GTP binding domain
YPZ3_3262	PF03144	Elongation factor Tu domain 2
YPZ3_3262	PF04760	Translation initiation factor IF-2, N-terminal region
YPZ3_3262	PF08364	YPZ3_3262
YPZ3_3262	PF11987	Translation-initiation factor 2
YPZ3_3263	PF02033	Ribosome-binding factor A
YPZ3_3264	PF01509	TruB family pseudouridylate synthase (N terminal domain)
YPZ3_3264	PF09157	Pseudouridine synthase II TruB, C-terminal
YPZ3_3264	PF16198	YPZ3_3264
YPZ3_3265	PF13518	Helix-turn-helix domain
YPZ3_3266	PF00665	Integrase core domain
YPZ3_3266	PF13276	YPZ3_3266
YPZ3_3267	PF04965	Gene 25-like lysozyme
YPZ3_3268	PF05943	YPZ3_3268
YPZ3_3269	PF05591	YPZ3_3269
YPZ3_3270	PF05638	Protein of unknown function (DUF796)
YPZ3_3271	PF07148	YPZ3_3271
YPZ3_3272	PF02264	LamB porin
YPZ3_3273	PF00005	ABC transporter
YPZ3_3273	PF08402	TOBE domain
YPZ3_3274	PF13416	Bacterial extracellular solute-binding protein
YPZ3_3275	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_3275	PF14785	Maltose transport system permease protein MalF P2 domain
YPZ3_3276	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_3277	PF06146	YPZ3_3277
YPZ3_3278	PF00342	Phosphoglucose isomerase
YPZ3_3279	PF00696	Amino acid kinase family
YPZ3_3281	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPZ3_3281	PF08479	POTRA domain, ShlB-type
YPZ3_3281	PF17287	YPZ3_3281
YPZ3_3282	PF05860	haemagglutination activity domain
YPZ3_3282	PF13332	YPZ3_3282
YPZ3_3283	PF00809	Pterin binding enzyme
YPZ3_3283	PF02310	B12 binding domain
YPZ3_3283	PF02574	Homocysteine S-methyltransferase
YPZ3_3283	PF02607	B12 binding domain
YPZ3_3283	PF02965	Vitamin B12 dependent methionine synthase, activation domain
YPZ3_3284	PF09339	IclR helix-turn-helix domain
YPZ3_3285	PF01614	Bacterial transcriptional regulator
YPZ3_3286	PF06315	Isocitrate dehydrogenase kinase/phosphatase (AceK)
YPZ3_3287	PF00463	Isocitrate lyase family
YPZ3_3288	PF01274	Malate synthase
YPZ3_3289	PF04204	Homoserine O-succinyltransferase
YPZ3_3290	PF01808	AICARFT/IMPCHase bienzyme
YPZ3_3290	PF02142	MGS-like domain
YPZ3_3291	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
YPZ3_3291	PF02843	Phosphoribosylglycinamide synthetase, C domain
YPZ3_3291	PF02844	Phosphoribosylglycinamide synthetase, N domain
YPZ3_3292	PF07356	YPZ3_3292
YPZ3_3293	PF04222	Protein of unknown function (DUF416)
YPZ3_3294	PF04493	Endonuclease V
YPZ3_3295	PF01208	Uroporphyrinogen decarboxylase (URO-D)
YPZ3_3297	PF00293	NUDIX domain
YPZ3_3297	PF09297	NADH pyrophosphatase zinc ribbon domain
YPZ3_3298	PF04353	Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
YPZ3_3299	PF01964	ThiC family
YPZ3_3299	PF13667	ThiC-associated domain
YPZ3_3300	PF02581	Thiamine monophosphate synthase/TENI
YPZ3_3301	PF00899	ThiF family
YPZ3_3302	PF05690	Thiazole biosynthesis protein ThiG
YPZ3_3303	PF04055	Radical SAM superfamily
YPZ3_3303	PF06968	Biotin and Thiamin Synthesis associated domain
YPZ3_3304	PF01797	Transposase IS200 like
YPZ3_3305	PF00623	RNA polymerase Rpb1, domain 2
YPZ3_3305	PF04983	RNA polymerase Rpb1, domain 3
YPZ3_3305	PF04997	RNA polymerase Rpb1, domain 1
YPZ3_3305	PF04998	RNA polymerase Rpb1, domain 5
YPZ3_3305	PF05000	RNA polymerase Rpb1, domain 4
YPZ3_3306	PF00562	RNA polymerase Rpb2, domain 6
YPZ3_3306	PF04560	RNA polymerase Rpb2, domain 7
YPZ3_3306	PF04561	RNA polymerase Rpb2, domain 2
YPZ3_3306	PF04563	RNA polymerase beta subunit
YPZ3_3306	PF04565	RNA polymerase Rpb2, domain 3
YPZ3_3306	PF10385	RNA polymerase beta subunit external 1 domain
YPZ3_3307	PF00542	Ribosomal protein L7/L12 C-terminal domain
YPZ3_3307	PF16320	YPZ3_3307
YPZ3_3308	PF00466	Ribosomal protein L10
YPZ3_3309	PF00687	Ribosomal protein L1p/L10e family
YPZ3_3310	PF00298	Ribosomal protein L11, RNA binding domain
YPZ3_3310	PF03946	Ribosomal protein L11, N-terminal domain
YPZ3_3311	PF00467	KOW motif
YPZ3_3311	PF02357	Transcription termination factor nusG
YPZ3_3312	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
YPZ3_3313	PF00009	Elongation factor Tu GTP binding domain
YPZ3_3313	PF03143	Elongation factor Tu C-terminal domain
YPZ3_3313	PF03144	Elongation factor Tu domain 2
YPZ3_3314	PF01695	IstB-like ATP binding protein
YPZ3_3315	PF00665	Integrase core domain
YPZ3_3315	PF02796	Helix-turn-helix domain of resolvase
YPZ3_3316	PF13673	Acetyltransferase (GNAT) domain
YPZ3_3317	PF00485	Phosphoribulokinase / Uridine kinase family
YPZ3_3318	PF02237	Biotin protein ligase C terminal domain
YPZ3_3318	PF03099	Biotin/lipoate A/B protein ligase family
YPZ3_3318	PF08279	HTH domain
YPZ3_3319	PF01565	FAD binding domain
YPZ3_3319	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
YPZ3_3320	PF02386	Cation transport protein
YPZ3_3321	PF01205	Uncharacterized protein family UPF0029
YPZ3_3321	PF09186	Domain of unknown function (DUF1949)
YPZ3_3322	PF01797	Transposase IS200 like
YPZ3_3323	PF00557	Metallopeptidase family M24
YPZ3_3324	PF00378	Enoyl-CoA hydratase/isomerase family
YPZ3_3324	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
YPZ3_3324	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YPZ3_3325	PF00108	Thiolase, N-terminal domain
YPZ3_3325	PF02803	Thiolase, C-terminal domain
YPZ3_3326	PF00175	Oxidoreductase NAD-binding domain
YPZ3_3326	PF00970	Oxidoreductase FAD-binding domain
YPZ3_3327	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
YPZ3_3328	PF02357	Transcription termination factor nusG
YPZ3_3329	PF00490	Delta-aminolevulinic acid dehydratase
YPZ3_3330	PF01026	TatD related DNase
YPZ3_3331	PF01695	IstB-like ATP binding protein
YPZ3_3332	PF00665	Integrase core domain
YPZ3_3332	PF02796	Helix-turn-helix domain of resolvase
YPZ3_3333	PF01026	TatD related DNase
YPZ3_3334	PF00902	Sec-independent protein translocase protein (TatC)
YPZ3_3336	PF03109	YPZ3_3336
YPZ3_3337	PF02036	SCP-2 sterol transfer family
YPZ3_3338	PF01209	ubiE/COQ5 methyltransferase family
YPZ3_3339	PF02646	YPZ3_3339
YPZ3_3340	PF09335	YPZ3_3340
YPZ3_3341	PF02554	YPZ3_3341
YPZ3_3341	PF13722	YPZ3_3341
YPZ3_3342	PF13350	Tyrosine phosphatase family
YPZ3_3343	PF01048	Phosphorylase superfamily
YPZ3_3344	PF01738	Dienelactone hydrolase family
YPZ3_3345	PF01717	Cobalamin-independent synthase, Catalytic domain
YPZ3_3345	PF08267	Cobalamin-independent synthase, N-terminal domain
YPZ3_3346	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_3346	PF03466	LysR substrate binding domain
YPZ3_3347	PF03547	YPZ3_3347
YPZ3_3348	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPZ3_3349	PF00005	ABC transporter
YPZ3_3349	PF08402	TOBE domain
YPZ3_3350	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_3351	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_3352	PF13416	Bacterial extracellular solute-binding protein
YPZ3_3353	PF04449	CS1 type fimbrial major subunit
YPZ3_3354	PF16967	YPZ3_3354
YPZ3_3360	PF00005	ABC transporter
YPZ3_3361	PF00005	ABC transporter
YPZ3_3361	PF12399	Branched-chain amino acid ATP-binding cassette transporter
YPZ3_3362	PF02653	YPZ3_3362
YPZ3_3362	PF11862	YPZ3_3362
YPZ3_3363	PF02653	YPZ3_3363
YPZ3_3364	PF13458	Periplasmic binding protein
YPZ3_3365	PF12568	Acetyltransferase (GNAT) domain
YPZ3_3366	PF01797	Transposase IS200 like
YPZ3_3367	PF00140	Sigma-70 factor, region 1
YPZ3_3367	PF04542	Sigma-70 region 2
YPZ3_3367	PF04545	Sigma-70, region 4
YPZ3_3368	PF02687	YPZ3_3368
YPZ3_3369	PF00005	ABC transporter
YPZ3_3370	PF00448	SRP54-type protein, GTPase domain
YPZ3_3370	PF02881	SRP54-type protein, helical bundle domain
YPZ3_3371	PF03602	Conserved hypothetical protein 95
YPZ3_3372	PF10694	Protein of unknown function (DUF2500)
YPZ3_3373	PF08850	YPZ3_3373
YPZ3_3374	PF07947	YPZ3_3374
YPZ3_3375	PF00122	E1-E2 ATPase
YPZ3_3375	PF00403	Heavy-metal-associated domain
YPZ3_3375	PF00702	haloacid dehalogenase-like hydrolase
YPZ3_3376	PF01206	Sulfurtransferase TusA
YPZ3_3377	PF02592	YPZ3_3377
YPZ3_3378	PF08786	Domain of unknown function (DUF1795)
YPZ3_3379	PF02754	YPZ3_3379
YPZ3_3380	PF00890	FAD binding domain
YPZ3_3381	PF01266	FAD dependent oxidoreductase
YPZ3_3381	PF04324	BFD-like [2Fe-2S] binding domain
YPZ3_3382	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPZ3_3383	PF03272	YPZ3_3383
YPZ3_3384	PF08282	haloacid dehalogenase-like hydrolase
YPZ3_3385	PF12146	Putative lysophospholipase
YPZ3_3386	PF01810	YPZ3_3386
YPZ3_3387	PF01810	YPZ3_3387
YPZ3_3388	PF00270	DEAD/DEAH box helicase
YPZ3_3388	PF00271	Helicase conserved C-terminal domain
YPZ3_3388	PF00570	HRDC domain
YPZ3_3388	PF09382	RQC domain
YPZ3_3388	PF16124	YPZ3_3388
YPZ3_3389	PF02253	Phospholipase A1
YPZ3_3390	PF03061	Thioesterase superfamily
YPZ3_3391	PF00892	EamA-like transporter family
YPZ3_3392	PF01544	CorA-like Mg2+ transporter protein
YPZ3_3393	PF09370	TIM-barrel signal transduction protein
YPZ3_3394	PF06792	Uncharacterised protein family (UPF0261)
YPZ3_3395	PF00440	Bacterial regulatory proteins, tetR family
YPZ3_3396	PF00580	UvrD/REP helicase N-terminal domain
YPZ3_3396	PF13361	UvrD-like helicase C-terminal domain
YPZ3_3397	PF00702	haloacid dehalogenase-like hydrolase
YPZ3_3398	PF00589	Phage integrase family
YPZ3_3398	PF02899	Phage integrase, N-terminal SAM-like domain
YPZ3_3399	PF04340	Protein of unknown function, DUF484
YPZ3_3400	PF01678	Diaminopimelate epimerase
YPZ3_3401	PF01491	Frataxin-like domain
YPZ3_3402	PF01295	YPZ3_3402
YPZ3_3402	PF12633	YPZ3_3402
YPZ3_3403	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
YPZ3_3403	PF03900	Porphobilinogen deaminase, C-terminal domain
YPZ3_3404	PF02602	Uroporphyrinogen-III synthase HemD
YPZ3_3405	PF04375	YPZ3_3405
YPZ3_3406	PF07219	YPZ3_3406
YPZ3_3407	PF01797	Transposase IS200 like
YPZ3_3408	PF00324	Amino acid permease
YPZ3_3409	PF03808	YPZ3_3409
YPZ3_3410	PF06899	YPZ3_3410
YPZ3_3411	PF07429	YPZ3_3411
YPZ3_3412	PF01943	YPZ3_3412
YPZ3_3413	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
YPZ3_3414	PF00583	Acetyltransferase (GNAT) family
YPZ3_3415	PF00483	Nucleotidyl transferase
YPZ3_3416	PF16363	YPZ3_3416
YPZ3_3417	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
YPZ3_3417	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
YPZ3_3417	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
YPZ3_3418	PF02350	UDP-N-acetylglucosamine 2-epimerase
YPZ3_3419	PF02706	Chain length determinant protein
YPZ3_3420	PF00953	Glycosyl transferase family 4
YPZ3_3421	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPZ3_3421	PF07497	Rho termination factor, RNA-binding domain
YPZ3_3421	PF07498	Rho termination factor, N-terminal domain
YPZ3_3422	PF00085	Thioredoxin
YPZ3_3423	PF00270	DEAD/DEAH box helicase
YPZ3_3423	PF00271	Helicase conserved C-terminal domain
YPZ3_3424	PF02541	Ppx/GppA phosphatase family
YPZ3_3425	PF00580	UvrD/REP helicase N-terminal domain
YPZ3_3425	PF13361	UvrD-like helicase C-terminal domain
YPZ3_3426	PF05096	Glutamine cyclotransferase
YPZ3_3427	PF00872	YPZ3_3427
YPZ3_3428	PF16970	YPZ3_3428
YPZ3_3429	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPZ3_3429	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPZ3_3430	PF00577	Outer membrane usher protein
YPZ3_3430	PF13953	PapC C-terminal domain
YPZ3_3430	PF13954	PapC N-terminal domain
YPZ3_3431	PF00419	Fimbrial protein
YPZ3_3432	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPZ3_3432	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPZ3_3433	PF06958	S-type Pyocin
YPZ3_3434	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
YPZ3_3434	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
YPZ3_3435	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_3435	PF03466	LysR substrate binding domain
YPZ3_3436	PF11692	YPZ3_3436
YPZ3_3437	PF06092	YPZ3_3437
YPZ3_3438	PF06092	YPZ3_3438
YPZ3_3439	PF00291	Pyridoxal-phosphate dependent enzyme
YPZ3_3439	PF00585	C-terminal regulatory domain of Threonine dehydratase
YPZ3_3440	PF00920	Dehydratase family
YPZ3_3441	PF01063	Aminotransferase class IV
YPZ3_3442	PF00205	Thiamine pyrophosphate enzyme, central domain
YPZ3_3442	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPZ3_3442	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPZ3_3443	PF01078	Magnesium chelatase, subunit ChlI
YPZ3_3443	PF13335	YPZ3_3443
YPZ3_3443	PF13541	Subunit ChlI of Mg-chelatase
YPZ3_3444	PF04219	YPZ3_3444
YPZ3_3445	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_3445	PF03466	LysR substrate binding domain
YPZ3_3446	PF02653	YPZ3_3446
YPZ3_3447	PF02653	YPZ3_3447
YPZ3_3448	PF00005	ABC transporter
YPZ3_3449	PF13407	Periplasmic binding protein domain
YPZ3_3450	PF01177	Asp/Glu/Hydantoin racemase
YPZ3_3451	PF00593	TonB dependent receptor
YPZ3_3451	PF07715	TonB-dependent Receptor Plug Domain
YPZ3_3452	PF05958	tRNA (Uracil-5-)-methyltransferase
YPZ3_3453	PF07226	YPZ3_3453
YPZ3_3454	PF00440	Bacterial regulatory proteins, tetR family
YPZ3_3455	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPZ3_3455	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPZ3_3456	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPZ3_3456	PF03466	LysR substrate binding domain
YPZ3_3457	PF00462	Glutaredoxin
YPZ3_3457	PF08534	Redoxin
YPZ3_3458	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPZ3_3458	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPZ3_3459	PF03544	Gram-negative bacterial TonB protein C-terminal
YPZ3_3460	PF13437	HlyD family secretion protein
YPZ3_3460	PF13533	Biotin-lipoyl like
YPZ3_3461	PF00005	ABC transporter
YPZ3_3461	PF00664	ABC transporter transmembrane region
YPZ3_3462	PF06438	Heme-binding protein A (HasA)
YPZ3_3463	PF00593	TonB dependent receptor
YPZ3_3463	PF07715	TonB-dependent Receptor Plug Domain
YPZ3_3464	PF00206	Lyase
YPZ3_3464	PF14698	Argininosuccinate lyase C-terminal
YPZ3_3465	PF00696	Amino acid kinase family
YPZ3_3466	PF01118	Semialdehyde dehydrogenase, NAD binding domain
YPZ3_3466	PF02774	Semialdehyde dehydrogenase, dimerisation domain
YPZ3_3467	PF01546	Peptidase family M20/M25/M40
YPZ3_3467	PF07687	Peptidase dimerisation domain
YPZ3_3468	PF00311	Phosphoenolpyruvate carboxylase
YPZ3_3469	PF13518	Helix-turn-helix domain
YPZ3_3470	PF00665	Integrase core domain
YPZ3_3470	PF13276	YPZ3_3470
YPZ3_3471	PF07690	Major Facilitator Superfamily
YPZ3_3472	PF13988	YPZ3_3472
YPZ3_3474	PF01526	YPZ3_3474
YPZ3_3475	PF00009	Elongation factor Tu GTP binding domain
YPZ3_3475	PF09106	Elongation factor SelB, winged helix
YPZ3_3475	PF09107	Elongation factor SelB, winged helix
YPZ3_3476	PF03841	L-seryl-tRNA selenium transferase
YPZ3_3476	PF12390	YPZ3_3476
YPZ3_3477	PF04216	Protein involved in formate dehydrogenase formation
YPZ3_3478	PF01292	Prokaryotic cytochrome b561
YPZ3_3479	PF09163	Formate dehydrogenase N, transmembrane
YPZ3_3479	PF13247	4Fe-4S dicluster domain
YPZ3_3480	PF00384	Molybdopterin oxidoreductase
YPZ3_3480	PF01568	Molydopterin dinucleotide binding domain
YPZ3_3481	PF00384	Molybdopterin oxidoreductase
YPZ3_3481	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPZ3_3482	PF02634	FdhD/NarQ family
YPZ3_3483	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
YPZ3_3483	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
YPZ3_3484	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPZ3_3484	PF00672	HAMP domain
YPZ3_3484	PF16591	YPZ3_3484
YPZ3_3486	PF10517	YPZ3_3486
YPZ3_3487	PF10928	Protein of unknown function (DUF2810)
YPZ3_3488	PF05068	Mannitol repressor
YPZ3_3489	PF01232	Mannitol dehydrogenase Rossmann domain
YPZ3_3489	PF08125	Mannitol dehydrogenase C-terminal domain
YPZ3_3490	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPZ3_3490	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPZ3_3490	PF02378	Phosphotransferase system, EIIC
YPZ3_3491	PF11254	YPZ3_3491
YPZ3_3492	PF02092	YPZ3_3492
YPZ3_3492	PF05746	DALR anticodon binding domain
YPZ3_3493	PF02091	Glycyl-tRNA synthetase alpha subunit
YPZ3_3494	PF03352	Methyladenine glycosylase
YPZ3_3495	PF13673	Acetyltransferase (GNAT) domain
YPZ3_3496	PF00691	OmpA family
YPZ3_3496	PF13488	YPZ3_3496
YPZ3_3498	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPZ3_3498	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPZ3_3499	PF00128	Alpha amylase, catalytic domain
YPZ3_3501	PF00155	Aminotransferase class I and II
YPZ3_3502	PF02080	TrkA-C domain
YPZ3_3502	PF06826	YPZ3_3502
YPZ3_3503	PF00011	Hsp20/alpha crystallin family
YPZ3_3504	PF00011	Hsp20/alpha crystallin family
YPZ3_3505	PF07119	YPZ3_3505
YPZ3_3506	PF07676	WD40-like Beta Propeller Repeat
YPZ3_3508	PF00291	Pyridoxal-phosphate dependent enzyme
YPZ3_3509	PF02423	Ornithine cyclodeaminase/mu-crystallin family
YPZ3_3510	PF13518	Helix-turn-helix domain
YPZ3_3511	PF00665	Integrase core domain
YPZ3_3511	PF13276	YPZ3_3511
YPZ3_3512	PF08282	haloacid dehalogenase-like hydrolase
YPZ3_3513	PF00204	DNA gyrase B
YPZ3_3513	PF00986	DNA gyrase B subunit, carboxyl terminus
YPZ3_3513	PF01751	Toprim domain
YPZ3_3513	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPZ3_3514	PF02463	RecF/RecN/SMC N terminal domain
YPZ3_3515	PF00712	DNA polymerase III beta subunit, N-terminal domain
YPZ3_3515	PF02767	DNA polymerase III beta subunit, central domain
YPZ3_3515	PF02768	DNA polymerase III beta subunit, C-terminal domain
YPZ3_3516	PF00308	Bacterial dnaA  protein
YPZ3_3516	PF08299	Bacterial dnaA protein helix-turn-helix
YPZ3_3516	PF11638	DnaA N-terminal domain
YPZ3_3517	PF02096	60Kd inner membrane protein
YPZ3_3517	PF14849	YidC periplasmic domain
YPZ3_3518	PF01926	50S ribosome-binding GTPase
YPZ3_3518	PF10396	GTP-binding protein TrmE N-terminus
YPZ3_3518	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
YPZ3_3519	PF07055	Enoyl reductase FAD binding domain
YPZ3_3519	PF12241	Trans-2-enoyl-CoA reductase catalytic region
YPZ3_3519	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
YPZ3_3521	PF00860	Permease family
YPZ3_3522	PF13419	Haloacid dehalogenase-like hydrolase
YPZ3_3523	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_3524	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_3525	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPZ3_3526	PF04519	YPZ3_3526
YPZ3_3527	PF01895	PhoU domain
YPZ3_3528	PF00005	ABC transporter
YPZ3_3529	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_3530	PF00528	Binding-protein-dependent transport system inner membrane component
YPZ3_3531	PF12849	PBP superfamily domain
YPZ3_3532	PF01380	SIS domain
YPZ3_3532	PF13522	Glutamine amidotransferase domain
YPZ3_3533	PF00132	Bacterial transferase hexapeptide (six repeats)
YPZ3_3533	PF12804	MobA-like NTP transferase domain
YPZ3_3534	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
YPZ3_3534	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
YPZ3_3535	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPZ3_3535	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YPZ3_3536	PF00231	ATP synthase
YPZ3_3537	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPZ3_3537	PF00306	ATP synthase alpha/beta chain, C terminal domain
YPZ3_3537	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YPZ3_3538	PF00213	ATP synthase delta (OSCP) subunit
YPZ3_3539	PF00430	ATP synthase B/B' CF(0)
YPZ3_3540	PF00119	ATP synthase A chain
YPZ3_3541	PF03899	YPZ3_3541
YPZ3_3542	PF02527	rRNA small subunit methyltransferase G
YPZ3_3543	PF01134	Glucose inhibited division protein A
YPZ3_3543	PF13932	GidA associated domain 3
YPZ3_pCD0001	PF13683	YPZ3_pCD0001
YPZ3_pCD0002	PF05932	Tir chaperone protein (CesT) family
YPZ3_pCD0003	PF03545	Yersinia virulence determinant (YopE)
YPZ3_pCD0003	PF09020	YopE, N terminal
YPZ3_pCD0005	PF02195	ParB-like nuclease domain
YPZ3_pCD0006	PF00376	MerR family regulatory protein
YPZ3_pCD0006	PF13614	AAA domain
YPZ3_pCD0007	PF13276	YPZ3_pCD0007
YPZ3_pCD0008	PF01527	Transposase
YPZ3_pCD0009	PF05818	YPZ3_pCD0009
YPZ3_pCD0011	PF03543	Yersinia/Haemophilus virulence surface antigen
YPZ3_pCD0012	PF05932	Tir chaperone protein (CesT) family
YPZ3_pCD0015	PF12468	Type III secretion system leucine rich repeat protein
YPZ3_pCD0016	PF13610	YPZ3_pCD0016
YPZ3_pCD0017	PF05844	YopD protein
YPZ3_pCD0018	PF04888	YPZ3_pCD0018
YPZ3_pCD0019	PF07720	Tetratricopeptide repeat
YPZ3_pCD0020	PF04792	V antigen (LcrV) protein
YPZ3_pCD0021	PF09621	YPZ3_pCD0021
YPZ3_pCD0022	PF00771	FHIPEP family
YPZ3_pCD0024	PF09474	YPZ3_pCD0024
YPZ3_pCD0026	PF07201	HrpJ-like domain
YPZ3_pCD0027	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPZ3_pCD0027	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YPZ3_pCD0028	PF07321	Type III secretion protein YscO
YPZ3_pCD0029	PF02120	Flagellar hook-length control protein FliK
YPZ3_pCD0030	PF01052	Surface presentation of antigens (SPOA)
YPZ3_pCD0031	PF00813	YPZ3_pCD0031
YPZ3_pCD0032	PF01311	YPZ3_pCD0032
YPZ3_pCD0033	PF01312	FlhB HrpN YscU SpaS Family
YPZ3_pCD0034	PF09619	Type III secretion system lipoprotein chaperone (YscW)
YPZ3_pCD0035	PF02311	AraC-like ligand binding domain
YPZ3_pCD0035	PF12833	Helix-turn-helix domain
YPZ3_pCD0036	PF05932	Tir chaperone protein (CesT) family
YPZ3_pCD0037	PF00263	YPZ3_pCD0037
YPZ3_pCD0037	PF03958	Bacterial type II/III secretion system short domain
YPZ3_pCD0039	PF16693	YPZ3_pCD0039
YPZ3_pCD0040	PF09477	Bacterial type II secretion system chaperone protein (type_III_yscG)
YPZ3_pCD0041	PF09025	YopR Core
YPZ3_pCD0042	PF17001	YPZ3_pCD0042
YPZ3_pCD0043	PF01514	Secretory protein of YscJ/FliF family
YPZ3_pCD0044	PF06578	YPZ3_pCD0044
YPZ3_pCD0045	PF02108	YPZ3_pCD0045
YPZ3_pCD0046	PF09013	YopH, N-terminal
YPZ3_pCD0048	PF13683	YPZ3_pCD0048
YPZ3_pCD0049	PF00102	Protein-tyrosine phosphatase
YPZ3_pCD0049	PF09013	YopH, N-terminal
YPZ3_pCD0050	PF13683	YPZ3_pCD0050
YPZ3_pCD0051	PF03421	YPZ3_pCD0051
YPZ3_pCD0052	PF00069	Protein kinase domain
YPZ3_pCD0052	PF09632	Rac1-binding domain
YPZ3_pCD0054	PF02387	YPZ3_pCD0054
YPZ3_pCD0055	PF13276	YPZ3_pCD0055
YPZ3_pCD0056	PF01527	Transposase
YPZ3_pCD0058	PF03895	YadA-like C-terminal region
YPZ3_pCD0058	PF05658	Head domain of trimeric autotransporter adhesin
YPZ3_pCD0058	PF05662	Coiled stalk of trimeric autotransporter adhesin
YPZ3_pCD0060	PF01526	YPZ3_pCD0060
YPZ3_pCD0060	PF13700	YPZ3_pCD0060
YPZ3_pCD0061	PF00239	Resolvase, N terminal domain
YPZ3_pCD0061	PF02796	Helix-turn-helix domain of resolvase
YPZ3_pCD0064	PF13276	YPZ3_pCD0064
YPZ3_pCD0064	PF13683	YPZ3_pCD0064
YPZ3_pCD0065	PF05932	Tir chaperone protein (CesT) family
YPZ3_pCD0066	PF01695	IstB-like ATP binding protein
YPZ3_pMT0001	PF00665	Integrase core domain
YPZ3_pMT0001	PF02796	Helix-turn-helix domain of resolvase
YPZ3_pMT0002	PF01695	IstB-like ATP binding protein
YPZ3_pMT0003	PF02413	YPZ3_pMT0003
YPZ3_pMT0004	PF03335	Phage tail fibre repeat
YPZ3_pMT0004	PF03406	YPZ3_pMT0004
YPZ3_pMT0004	PF07484	Phage Tail Collar Domain
YPZ3_pMT0005	PF14301	YPZ3_pMT0005
YPZ3_pMT0006	PF09327	YPZ3_pMT0006
YPZ3_pMT0006	PF12421	YPZ3_pMT0006
YPZ3_pMT0006	PF13550	YPZ3_pMT0006
YPZ3_pMT0008	PF00877	NlpC/P60 family
YPZ3_pMT0008	PF14464	Prokaryotic homologs of the JAB domain
YPZ3_pMT0009	PF05100	YPZ3_pMT0009
YPZ3_pMT0010	PF05939	YPZ3_pMT0010
YPZ3_pMT0011	PF09718	YPZ3_pMT0011
YPZ3_pMT0013	PF02368	Bacterial Ig-like domain (group 2)
YPZ3_pMT0019	PF02368	Bacterial Ig-like domain (group 2)
YPZ3_pMT0023	PF03237	Terminase-like family
YPZ3_pMT0026	PF00005	ABC transporter
YPZ3_pMT0027	PF02195	ParB-like nuclease domain
YPZ3_pMT0028	PF02195	ParB-like nuclease domain
YPZ3_pMT0029	PF00270	DEAD/DEAH box helicase
YPZ3_pMT0029	PF00271	Helicase conserved C-terminal domain
YPZ3_pMT0031	PF03614	YPZ3_pMT0031
YPZ3_pMT0034	PF01797	Transposase IS200 like
YPZ3_pMT0037	PF13476	AAA domain
YPZ3_pMT0038	PF00149	Calcineurin-like phosphoesterase
YPZ3_pMT0039	PF09084	NMT1/THI5 like
YPZ3_pMT0041	PF01051	Initiator Replication protein
YPZ3_pMT0044	PF10765	Protein of unknown function (DUF2591)
YPZ3_pMT0045	PF01145	SPFH domain / Band 7 family
YPZ3_pMT0046	PF00154	recA bacterial DNA recombination protein
YPZ3_pMT0047	PF01367	5'-3' exonuclease, C-terminal SAM fold
YPZ3_pMT0047	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
YPZ3_pMT0052	PF02811	PHP domain
YPZ3_pMT0052	PF07733	Bacterial DNA polymerase III alpha subunit
YPZ3_pMT0052	PF14579	Helix-hairpin-helix motif
YPZ3_pMT0053	PF07728	AAA domain (dynein-related subfamily)
YPZ3_pMT0054	PF06213	YPZ3_pMT0054
YPZ3_pMT0054	PF11775	YPZ3_pMT0054
YPZ3_pMT0056	PF00589	Phage integrase family
YPZ3_pMT0057	PF09255	Caf1 Capsule antigen
YPZ3_pMT0058	PF00577	Outer membrane usher protein
YPZ3_pMT0058	PF13953	PapC C-terminal domain
YPZ3_pMT0058	PF13954	PapC N-terminal domain
YPZ3_pMT0059	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPZ3_pMT0059	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPZ3_pMT0060	PF06445	GyrI-like small molecule binding domain
YPZ3_pMT0060	PF12833	Helix-turn-helix domain
YPZ3_pMT0061	PF00872	YPZ3_pMT0061
YPZ3_pMT0062	PF01548	YPZ3_pMT0062
YPZ3_pMT0062	PF02371	YPZ3_pMT0062
YPZ3_pMT0064	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
YPZ3_pMT0066	PF13091	PLD-like domain
YPZ3_pMT0067	PF04754	YPZ3_pMT0067
YPZ3_pMT0068	PF00239	Resolvase, N terminal domain
YPZ3_pMT0069	PF13614	AAA domain
YPZ3_pMT0070	PF02195	ParB-like nuclease domain
YPZ3_pMT0070	PF08775	ParB family
YPZ3_pMT0071	PF13191	AAA ATPase domain
YPZ3_pMT0072	PF01555	DNA methylase
YPZ3_pMT0073	PF07128	YPZ3_pMT0073
YPZ3_pMT0075	PF07275	Antirestriction protein (ArdA)
YPZ3_pMT0076	PF02195	ParB-like nuclease domain
YPZ3_pPCP0001	PF00665	Integrase core domain
YPZ3_pPCP0001	PF02796	Helix-turn-helix domain of resolvase
YPZ3_pPCP0002	PF01695	IstB-like ATP binding protein
YPZ3_pPCP0004	PF16765	YPZ3_pPCP0004
YPZ3_pPCP0005	PF16754	YPZ3_pPCP0005
YPZ3_pPCP0007	PF01278	Omptin family
YPZ3_pPCP0008	PF05973	YPZ3_pPCP0008