YPZ3_0002 SM00344 helix_turn_helix ASNC type YPZ3_0004 SM00327 von Willebrand factor (vWF) type A domain YPZ3_0005 SM00382 ATPases associated with a variety of cellular activities YPZ3_0010 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPZ3_0010 SM00895 YPZ3_0010 YPZ3_0016 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPZ3_0016 SM00474 3'-5' exonuclease YPZ3_0016 SM00475 5'-3' exonuclease YPZ3_0016 SM00482 DNA polymerase A domain YPZ3_0017 SM01321 YPZ3_0017 YPZ3_0020 SM00729 Elongator protein 3, MiaB family, Radical SAM YPZ3_0021 SM00382 ATPases associated with a variety of cellular activities YPZ3_0021 SM00448 cheY-homologous receiver domain YPZ3_0022 SM00091 PAS domain YPZ3_0022 SM00387 Histidine kinase-like ATPases YPZ3_0022 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_0023 SM01230 YPZ3_0023 YPZ3_0028 SM00382 ATPases associated with a variety of cellular activities YPZ3_0034 SM00487 DEAD-like helicases superfamily YPZ3_0034 SM00490 helicase superfamily c-terminal domain YPZ3_0036 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPZ3_0036 SM00954 Region found in RelA / SpoT proteins YPZ3_0037 SM00072 Guanylate kinase homologues. YPZ3_0038 SM00532 Ligase N family YPZ3_0047 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain YPZ3_0047 SM01232 YPZ3_0047 YPZ3_0055 SM00829 Enoylreductase YPZ3_0060 SM00450 Rhodanese Homology Domain YPZ3_0063 SM00971 Serine acetyltransferase, N-terminal YPZ3_0065 SM00342 helix_turn_helix, arabinose operon control protein YPZ3_0066 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPZ3_0066 SM00387 Histidine kinase-like ATPases YPZ3_0066 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_0067 SM00448 cheY-homologous receiver domain YPZ3_0067 SM00862 Transcriptional regulatory protein, C terminal YPZ3_0085 SM01321 YPZ3_0085 YPZ3_0086 SM00382 ATPases associated with a variety of cellular activities YPZ3_0091 SM00382 ATPases associated with a variety of cellular activities YPZ3_0091 SM01086 C-terminal, D2-small domain, of ClpB protein YPZ3_0094 SM00354 helix_turn _helix lactose operon repressor YPZ3_0095 SM00487 DEAD-like helicases superfamily YPZ3_0095 SM00490 helicase superfamily c-terminal domain YPZ3_0103 SM00420 helix_turn_helix, Deoxyribose operon repressor YPZ3_0103 SM01134 YPZ3_0103 YPZ3_0105 SM00450 Rhodanese Homology Domain YPZ3_0106 SM00421 helix_turn_helix, Lux Regulon YPZ3_0114 SM00316 Ribosomal protein S1-like RNA-binding domain YPZ3_0114 SM00732 Likely ribonuclease with RNase H fold. YPZ3_0116 SM00448 cheY-homologous receiver domain YPZ3_0116 SM00862 Transcriptional regulatory protein, C terminal YPZ3_0117 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPZ3_0117 SM00387 Histidine kinase-like ATPases YPZ3_0117 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_0120 SM00363 S4 RNA-binding domain YPZ3_0144 SM00354 helix_turn _helix lactose operon repressor YPZ3_0151 SM00100 Cyclic nucleotide-monophosphate binding domain YPZ3_0151 SM00419 helix_turn_helix, cAMP Regulatory protein YPZ3_0157 SM00062 Bacterial periplasmic substrate-binding proteins YPZ3_0158 SM00382 ATPases associated with a variety of cellular activities YPZ3_0163 SM00382 ATPases associated with a variety of cellular activities YPZ3_0174 SM00838 Elongation factor G C-terminus YPZ3_0174 SM00889 Elongation factor G, domain IV YPZ3_0176 SM01321 YPZ3_0176 YPZ3_0178 SM01403 YPZ3_0178 YPZ3_0182 SM01382 YPZ3_0182 YPZ3_0182 SM01383 YPZ3_0182 YPZ3_0184 SM00322 K homology RNA-binding domain YPZ3_0186 SM01374 YPZ3_0186 YPZ3_0187 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPZ3_0198 SM00363 S4 RNA-binding domain YPZ3_0198 SM01390 YPZ3_0198 YPZ3_0199 SM00662 RNA polymerases D YPZ3_0201 SM00422 helix_turn_helix, mercury resistance YPZ3_0213 SM00382 ATPases associated with a variety of cellular activities YPZ3_0220 SM00421 helix_turn_helix, Lux Regulon YPZ3_0220 SM00448 cheY-homologous receiver domain YPZ3_0221 SM00387 Histidine kinase-like ATPases YPZ3_0221 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_0221 SM00448 cheY-homologous receiver domain YPZ3_0224 SM00342 helix_turn_helix, arabinose operon control protein YPZ3_0229 SM00382 ATPases associated with a variety of cellular activities YPZ3_0240 SM00382 ATPases associated with a variety of cellular activities YPZ3_0247 SM00729 Elongator protein 3, MiaB family, Radical SAM YPZ3_0265 SM00060 Fibronectin type 3 domain YPZ3_0266 SM00869 Autotransporter beta-domain YPZ3_0269 SM00563 Phosphate acyltransferases YPZ3_0274 SM00829 Enoylreductase YPZ3_0275 SM00382 ATPases associated with a variety of cellular activities YPZ3_0276 SM01005 Alanine racemase, C-terminal domain YPZ3_0283 SM01007 Class II Aldolase and Adducin N-terminal domain YPZ3_0286 SM00342 helix_turn_helix, arabinose operon control protein YPZ3_0287 SM00342 helix_turn_helix, arabinose operon control protein YPZ3_0290 SM01276 YPZ3_0290 YPZ3_0299 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPZ3_0299 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPZ3_0299 SM00493 YPZ3_0299 YPZ3_0338 SM00822 YPZ3_0338 YPZ3_0346 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_0355 SM00841 Elongation factor P, C-terminal YPZ3_0355 SM01185 YPZ3_0355 YPZ3_0365 SM00479 YPZ3_0365 YPZ3_0369 SM00257 Lysin motif YPZ3_0369 SM00646 YPZ3_0369 YPZ3_0370 SM00853 MutL C terminal dimerisation domain YPZ3_0370 SM01340 YPZ3_0370 YPZ3_0374 SM00244 prohibitin homologues YPZ3_0375 SM00244 prohibitin homologues YPZ3_0376 SM00788 Adenylosuccinate synthetase YPZ3_0378 SM00316 Ribosomal protein S1-like RNA-binding domain YPZ3_0378 SM00357 Cold shock protein domain YPZ3_0378 SM00955 YPZ3_0378 YPZ3_0379 SM00967 RNA 2'-O ribose methyltransferase substrate binding YPZ3_0382 SM00382 ATPases associated with a variety of cellular activities YPZ3_0384 SM00382 ATPases associated with a variety of cellular activities YPZ3_0394 SM00342 helix_turn_helix, arabinose operon control protein YPZ3_0400 SM01133 YPZ3_0400 YPZ3_0404 SM00382 ATPases associated with a variety of cellular activities YPZ3_0413 SM00267 diguanylate cyclase YPZ3_0419 SM00749 bacterial OsmY and nodulation domain YPZ3_0423 SM01133 YPZ3_0423 YPZ3_0425 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain YPZ3_0430 SM00382 ATPases associated with a variety of cellular activities YPZ3_0431 SM00530 Helix-turn-helix XRE-family like proteins YPZ3_0433 SM00382 ATPases associated with a variety of cellular activities YPZ3_0436 SM00267 diguanylate cyclase YPZ3_0438 SM00831 Cation transporter/ATPase, N-terminus YPZ3_0442 SM00855 Phosphoglycerate mutase family YPZ3_0443 SM00342 helix_turn_helix, arabinose operon control protein YPZ3_0443 SM00871 Bacterial transcription activator, effector binding domain YPZ3_0445 SM00448 cheY-homologous receiver domain YPZ3_0445 SM00862 Transcriptional regulatory protein, C terminal YPZ3_0451 SM00852 Probable molybdopterin binding domain YPZ3_0456 SM00271 DnaJ molecular chaperone homology domain YPZ3_0460 SM00904 Riboflavin kinase YPZ3_0465 SM01321 YPZ3_0465 YPZ3_0467 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain YPZ3_0468 SM00851 MGS-like domain YPZ3_0468 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPZ3_0473 SM01321 YPZ3_0473 YPZ3_0477 SM00650 Ribosomal RNA adenine dimethylases YPZ3_0481 SM00271 DnaJ molecular chaperone homology domain YPZ3_0491 SM00382 ATPases associated with a variety of cellular activities YPZ3_0491 SM01086 C-terminal, D2-small domain, of ClpB protein YPZ3_0502 SM00487 DEAD-like helicases superfamily YPZ3_0502 SM00490 helicase superfamily c-terminal domain YPZ3_0503 SM00486 DNA polymerase type-B family YPZ3_0505 SM00382 ATPases associated with a variety of cellular activities YPZ3_0510 SM00382 ATPases associated with a variety of cellular activities YPZ3_0514 SM01329 YPZ3_0514 YPZ3_0515 SM00917 LeuA allosteric (dimerisation) domain YPZ3_0516 SM01321 YPZ3_0516 YPZ3_0521 SM01321 YPZ3_0521 YPZ3_0522 SM00354 helix_turn _helix lactose operon repressor YPZ3_0537 SM00842 Cell division protein FtsA YPZ3_0538 SM00864 Tubulin/FtsZ family, GTPase domain YPZ3_0538 SM00865 Tubulin/FtsZ family, C-terminal domain YPZ3_0542 SM00957 SecA DEAD-like domain YPZ3_0542 SM00958 SecA preprotein cross-linking domain YPZ3_0544 SM00382 ATPases associated with a variety of cellular activities YPZ3_0553 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPZ3_0553 SM00895 YPZ3_0553 YPZ3_0557 SM00858 YPZ3_0557 YPZ3_0559 SM01321 YPZ3_0559 YPZ3_0563 SM00869 Autotransporter beta-domain YPZ3_0567 SM00220 Serine/Threonine protein kinases, catalytic domain YPZ3_0569 SM00327 von Willebrand factor (vWF) type A domain YPZ3_0570 SM00327 von Willebrand factor (vWF) type A domain YPZ3_0572 SM00327 von Willebrand factor (vWF) type A domain YPZ3_0574 SM00912 haemagglutination activity domain YPZ3_0576 SM00869 Autotransporter beta-domain YPZ3_0580 SM00382 ATPases associated with a variety of cellular activities YPZ3_0582 SM00354 helix_turn _helix lactose operon repressor YPZ3_0587 SM01217 YPZ3_0587 YPZ3_0605 SM00493 YPZ3_0605 YPZ3_0605 SM00766 DNA primase DnaG DnaB-binding YPZ3_0607 SM01207 YPZ3_0607 YPZ3_0608 SM00905 Dihydroneopterin aldolase YPZ3_0610 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPZ3_0611 SM00287 Bacterial SH3 domain homologues YPZ3_0612 SM01118 YPZ3_0612 YPZ3_0625 SM00387 Histidine kinase-like ATPases YPZ3_0625 SM00433 TopoisomeraseII YPZ3_0628 SM00434 DNA Topoisomerase IV YPZ3_0629 SM00563 Phosphate acyltransferases YPZ3_0635 SM00342 helix_turn_helix, arabinose operon control protein YPZ3_0652 SM01321 YPZ3_0652 YPZ3_0653 SM01321 YPZ3_0653 YPZ3_0666 SM00382 ATPases associated with a variety of cellular activities YPZ3_0671 SM00382 ATPases associated with a variety of cellular activities YPZ3_0674 SM00858 YPZ3_0674 YPZ3_0679 SM01321 YPZ3_0679 YPZ3_0688 SM00862 Transcriptional regulatory protein, C terminal YPZ3_0704 SM00052 Putative diguanylate phosphodiesterase YPZ3_0704 SM00091 PAS domain YPZ3_0704 SM00267 diguanylate cyclase YPZ3_0709 SM00869 Autotransporter beta-domain YPZ3_0710 SM00364 Leucine-rich repeats, bacterial type YPZ3_0711 SM00364 Leucine-rich repeats, bacterial type YPZ3_0712 SM00364 Leucine-rich repeats, bacterial type YPZ3_0712 SM00369 Leucine-rich repeats, typical (most populated) subfamily YPZ3_0716 SM00823 Phosphopantetheine attachment site YPZ3_0716 SM00825 Beta-ketoacyl synthase YPZ3_0717 SM00825 Beta-ketoacyl synthase YPZ3_0719 SM00382 ATPases associated with a variety of cellular activities YPZ3_0727 SM00382 ATPases associated with a variety of cellular activities YPZ3_0728 SM00382 ATPases associated with a variety of cellular activities YPZ3_0733 SM00869 Autotransporter beta-domain YPZ3_0734 SM00869 Autotransporter beta-domain YPZ3_0740 SM00354 helix_turn _helix lactose operon repressor YPZ3_0747 SM01006 Siderophore biosynthesis protein domain YPZ3_0753 SM00421 helix_turn_helix, Lux Regulon YPZ3_0762 SM00382 ATPases associated with a variety of cellular activities YPZ3_0762 SM01086 C-terminal, D2-small domain, of ClpB protein YPZ3_0770 SM00382 ATPases associated with a variety of cellular activities YPZ3_0775 SM00478 endonuclease III YPZ3_0775 SM00525 YPZ3_0775 YPZ3_0781 SM00729 Elongator protein 3, MiaB family, Radical SAM YPZ3_0783 SM01152 YPZ3_0783 YPZ3_0787 SM00382 ATPases associated with a variety of cellular activities YPZ3_0790 SM00732 Likely ribonuclease with RNase H fold. YPZ3_0795 SM00731 SprT homologues. YPZ3_0800 SM00861 Transketolase, pyrimidine binding domain YPZ3_0801 SM01321 YPZ3_0801 YPZ3_0802 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPZ3_0814 SM01011 Aminopeptidase P, N-terminal domain YPZ3_0827 SM00448 cheY-homologous receiver domain YPZ3_0827 SM00862 Transcriptional regulatory protein, C terminal YPZ3_0828 SM00387 Histidine kinase-like ATPases YPZ3_0828 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_0834 SM00937 YPZ3_0834 YPZ3_0837 SM00530 Helix-turn-helix XRE-family like proteins YPZ3_0838 SM00530 Helix-turn-helix XRE-family like proteins YPZ3_0839 SM00778 Zinc-binding domain of primase-helicase YPZ3_0839 SM00885 D5 N terminal like YPZ3_0855 SM00382 ATPases associated with a variety of cellular activities YPZ3_0856 SM00382 ATPases associated with a variety of cellular activities YPZ3_0864 SM00354 helix_turn _helix lactose operon repressor YPZ3_0867 SM00354 helix_turn _helix lactose operon repressor YPZ3_0882 SM00420 helix_turn_helix, Deoxyribose operon repressor YPZ3_0882 SM01134 YPZ3_0882 YPZ3_0884 SM01321 YPZ3_0884 YPZ3_0886 SM00382 ATPases associated with a variety of cellular activities YPZ3_0888 SM00869 Autotransporter beta-domain YPZ3_0890 SM00947 Carbonic anhydrase YPZ3_0894 SM00382 ATPases associated with a variety of cellular activities YPZ3_0902 SM00862 Transcriptional regulatory protein, C terminal YPZ3_0903 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPZ3_0903 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPZ3_0903 SM00319 Homologues of the ligand binding domain of Tar YPZ3_0905 SM00849 Metallo-beta-lactamase superfamily YPZ3_0910 SM00354 helix_turn _helix lactose operon repressor YPZ3_0912 SM00563 Phosphate acyltransferases YPZ3_0915 SM00927 DNA mismatch repair enzyme MutH YPZ3_0917 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. YPZ3_0922 SM00382 ATPases associated with a variety of cellular activities YPZ3_0931 SM00646 YPZ3_0931 YPZ3_0932 SM00925 MltA specific insert domain YPZ3_0939 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPZ3_0939 SM00475 5'-3' exonuclease YPZ3_0943 SM01321 YPZ3_0943 YPZ3_0949 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPZ3_0958 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPZ3_0960 SM00935 Outer membrane protein (OmpH-like) YPZ3_0966 SM00481 DNA polymerase alpha chain like domain YPZ3_0969 SM00977 TilS substrate C-terminal domain YPZ3_0971 SM01322 YPZ3_0971 YPZ3_0979 SM00382 ATPases associated with a variety of cellular activities YPZ3_0979 SM00930 YPZ3_0979 YPZ3_0984 SM00257 Lysin motif YPZ3_0985 SM00849 Metallo-beta-lactamase superfamily YPZ3_0988 SM00479 YPZ3_0988 YPZ3_0990 SM00382 ATPases associated with a variety of cellular activities YPZ3_0999 SM01321 YPZ3_0999 YPZ3_1010 SM00861 Transketolase, pyrimidine binding domain YPZ3_1013 SM00881 CoA binding domain YPZ3_1026 SM00382 ATPases associated with a variety of cellular activities YPZ3_1028 SM00855 Phosphoglycerate mutase family YPZ3_1035 SM00382 ATPases associated with a variety of cellular activities YPZ3_1039 SM00382 ATPases associated with a variety of cellular activities YPZ3_1043 SM00729 Elongator protein 3, MiaB family, Radical SAM YPZ3_1043 SM00876 Biotin and Thiamin Synthesis associated domain YPZ3_1047 SM00382 ATPases associated with a variety of cellular activities YPZ3_1048 SM00487 DEAD-like helicases superfamily YPZ3_1048 SM00490 helicase superfamily c-terminal domain YPZ3_1054 SM01321 YPZ3_1054 YPZ3_1063 SM01321 YPZ3_1063 YPZ3_1066 SM00091 PAS domain YPZ3_1066 SM00387 Histidine kinase-like ATPases YPZ3_1066 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_1067 SM00382 ATPases associated with a variety of cellular activities YPZ3_1067 SM00448 cheY-homologous receiver domain YPZ3_1073 SM00382 ATPases associated with a variety of cellular activities YPZ3_1076 SM00487 DEAD-like helicases superfamily YPZ3_1076 SM00490 helicase superfamily c-terminal domain YPZ3_1080 SM00490 helicase superfamily c-terminal domain YPZ3_1081 SM01321 YPZ3_1081 YPZ3_1086 SM01118 YPZ3_1086 YPZ3_1087 SM00507 HNH nucleases YPZ3_1089 SM00382 ATPases associated with a variety of cellular activities YPZ3_1098 SM00382 ATPases associated with a variety of cellular activities YPZ3_1101 SM00450 Rhodanese Homology Domain YPZ3_1105 SM00382 ATPases associated with a variety of cellular activities YPZ3_1111 SM00487 DEAD-like helicases superfamily YPZ3_1111 SM00488 YPZ3_1111 YPZ3_1111 SM00491 YPZ3_1111 YPZ3_1112 SM01060 YPZ3_1112 YPZ3_1115 SM00852 Probable molybdopterin binding domain YPZ3_1120 SM00434 DNA Topoisomerase IV YPZ3_1121 SM00387 Histidine kinase-like ATPases YPZ3_1121 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_1121 SM00448 cheY-homologous receiver domain YPZ3_1122 SM00421 helix_turn_helix, Lux Regulon YPZ3_1122 SM00448 cheY-homologous receiver domain YPZ3_1127 SM01321 YPZ3_1127 YPZ3_1131 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPZ3_1131 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPZ3_1133 SM00530 Helix-turn-helix XRE-family like proteins YPZ3_1136 SM01007 Class II Aldolase and Adducin N-terminal domain YPZ3_1137 SM00420 helix_turn_helix, Deoxyribose operon repressor YPZ3_1137 SM01134 YPZ3_1137 YPZ3_1158 SM01321 YPZ3_1158 YPZ3_1159 SM00487 DEAD-like helicases superfamily YPZ3_1159 SM00490 helicase superfamily c-terminal domain YPZ3_1160 SM00363 S4 RNA-binding domain YPZ3_1163 SM00382 ATPases associated with a variety of cellular activities YPZ3_1167 SM00052 Putative diguanylate phosphodiesterase YPZ3_1169 SM00014 Acid phosphatase homologues YPZ3_1170 SM00833 Cobalamin synthesis protein cobW C-terminal domain YPZ3_1171 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPZ3_1171 SM00895 YPZ3_1171 YPZ3_1174 SM00841 Elongation factor P, C-terminal YPZ3_1174 SM01185 YPZ3_1174 YPZ3_1183 SM00382 ATPases associated with a variety of cellular activities YPZ3_1189 SM00862 Transcriptional regulatory protein, C terminal YPZ3_1194 SM00518 AP endonuclease family 2 YPZ3_1200 SM00382 ATPases associated with a variety of cellular activities YPZ3_1206 SM00382 ATPases associated with a variety of cellular activities YPZ3_1206 SM00930 YPZ3_1206 YPZ3_1208 SM00936 Penicillin-binding protein 5, C-terminal domain YPZ3_1210 SM00420 helix_turn_helix, Deoxyribose operon repressor YPZ3_1210 SM01134 YPZ3_1210 YPZ3_1211 SM01133 YPZ3_1211 YPZ3_1212 SM00014 Acid phosphatase homologues YPZ3_1217 SM00382 ATPases associated with a variety of cellular activities YPZ3_1222 SM00062 Bacterial periplasmic substrate-binding proteins YPZ3_1222 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPZ3_1223 SM00244 prohibitin homologues YPZ3_1227 SM00382 ATPases associated with a variety of cellular activities YPZ3_1233 SM00062 Bacterial periplasmic substrate-binding proteins YPZ3_1233 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPZ3_1234 SM00382 ATPases associated with a variety of cellular activities YPZ3_1235 SM00830 Chorismate mutase type II YPZ3_1247 SM00382 ATPases associated with a variety of cellular activities YPZ3_1249 SM00382 ATPases associated with a variety of cellular activities YPZ3_1249 SM01086 C-terminal, D2-small domain, of ClpB protein YPZ3_1250 SM01321 YPZ3_1250 YPZ3_1252 SM00382 ATPases associated with a variety of cellular activities YPZ3_1253 SM00382 ATPases associated with a variety of cellular activities YPZ3_1255 SM00344 helix_turn_helix ASNC type YPZ3_1256 SM00843 YPZ3_1256 YPZ3_1258 SM00382 ATPases associated with a variety of cellular activities YPZ3_1266 SM00870 YPZ3_1266 YPZ3_1272 SM00316 Ribosomal protein S1-like RNA-binding domain YPZ3_1273 SM00849 Metallo-beta-lactamase superfamily YPZ3_1274 SM00382 ATPases associated with a variety of cellular activities YPZ3_1276 SM01150 YPZ3_1276 YPZ3_1283 SM01321 YPZ3_1283 YPZ3_1286 SM00849 Metallo-beta-lactamase superfamily YPZ3_1295 SM00981 YPZ3_1295 YPZ3_1296 SM00382 ATPases associated with a variety of cellular activities YPZ3_1300 SM01321 YPZ3_1300 YPZ3_1301 SM00825 Beta-ketoacyl synthase YPZ3_1302 SM00382 ATPases associated with a variety of cellular activities YPZ3_1308 SM01321 YPZ3_1308 YPZ3_1315 SM00851 MGS-like domain YPZ3_1317 SM00881 CoA binding domain YPZ3_1318 SM00992 Hemimethylated DNA-binding protein YccV like YPZ3_1319 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YPZ3_1326 SM00825 Beta-ketoacyl synthase YPZ3_1333 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPZ3_1340 SM00382 ATPases associated with a variety of cellular activities YPZ3_1340 SM01086 C-terminal, D2-small domain, of ClpB protein YPZ3_1359 SM00382 ATPases associated with a variety of cellular activities YPZ3_1363 SM00852 Probable molybdopterin binding domain YPZ3_1365 SM00382 ATPases associated with a variety of cellular activities YPZ3_1369 SM00829 Enoylreductase YPZ3_1375 SM00382 ATPases associated with a variety of cellular activities YPZ3_1378 SM00919 Malic enzyme, NAD binding domain YPZ3_1378 SM01274 YPZ3_1378 YPZ3_1386 SM01321 YPZ3_1386 YPZ3_1392 SM01091 Transporter associated domain YPZ3_1396 SM01006 Siderophore biosynthesis protein domain YPZ3_1398 SM00382 ATPases associated with a variety of cellular activities YPZ3_1406 SM01350 YPZ3_1406 YPZ3_1418 SM00382 ATPases associated with a variety of cellular activities YPZ3_1419 SM00382 ATPases associated with a variety of cellular activities YPZ3_1426 SM00634 Bacterial Ig-like domain (group 1) YPZ3_1431 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPZ3_1439 SM00421 helix_turn_helix, Lux Regulon YPZ3_1439 SM00448 cheY-homologous receiver domain YPZ3_1452 SM00382 ATPases associated with a variety of cellular activities YPZ3_1456 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YPZ3_1460 SM00873 B3/4 domain YPZ3_1460 SM00874 tRNA synthetase B5 domain YPZ3_1460 SM00896 Ferredoxin-fold anticodon binding domain YPZ3_1464 SM00382 ATPases associated with a variety of cellular activities YPZ3_1484 SM00382 ATPases associated with a variety of cellular activities YPZ3_1489 SM00382 ATPases associated with a variety of cellular activities YPZ3_1491 SM01321 YPZ3_1491 YPZ3_1498 SM00354 helix_turn _helix lactose operon repressor YPZ3_1502 SM00479 YPZ3_1502 YPZ3_1509 SM00347 helix_turn_helix multiple antibiotic resistance protein YPZ3_1514 SM00363 S4 RNA-binding domain YPZ3_1520 SM00382 ATPases associated with a variety of cellular activities YPZ3_1521 SM00382 ATPases associated with a variety of cellular activities YPZ3_1525 SM01321 YPZ3_1525 YPZ3_1526 SM00382 ATPases associated with a variety of cellular activities YPZ3_1531 SM00953 YPZ3_1531 YPZ3_1533 SM00091 PAS domain YPZ3_1533 SM00382 ATPases associated with a variety of cellular activities YPZ3_1534 SM01321 YPZ3_1534 YPZ3_1536 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPZ3_1540 SM00422 helix_turn_helix, mercury resistance YPZ3_1543 SM00890 Domain of unknown function YPZ3_1554 SM00382 ATPases associated with a variety of cellular activities YPZ3_1554 SM00487 DEAD-like helicases superfamily YPZ3_1554 SM00490 helicase superfamily c-terminal domain YPZ3_1554 SM00847 Helicase associated domain (HA2) Add an annotation YPZ3_1555 SM00530 Helix-turn-helix XRE-family like proteins YPZ3_1556 SM00020 Trypsin-like serine protease YPZ3_1558 SM00867 YceI-like domain YPZ3_1561 SM01321 YPZ3_1561 YPZ3_1563 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPZ3_1563 SM00387 Histidine kinase-like ATPases YPZ3_1563 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_1564 SM00448 cheY-homologous receiver domain YPZ3_1564 SM00862 Transcriptional regulatory protein, C terminal YPZ3_1568 SM01002 Alanine dehydrogenase/PNT, C-terminal domain YPZ3_1568 SM01003 Alanine dehydrogenase/PNT, N-terminal domain YPZ3_1571 SM00100 Cyclic nucleotide-monophosphate binding domain YPZ3_1571 SM00419 helix_turn_helix, cAMP Regulatory protein YPZ3_1573 SM00098 Alkaline phosphatase homologues YPZ3_1587 SM00354 helix_turn _helix lactose operon repressor YPZ3_1600 SM00342 helix_turn_helix, arabinose operon control protein YPZ3_1602 SM00382 ATPases associated with a variety of cellular activities YPZ3_1606 SM00382 ATPases associated with a variety of cellular activities YPZ3_1614 SM00342 helix_turn_helix, arabinose operon control protein YPZ3_1616 SM00900 YPZ3_1616 YPZ3_1618 SM00478 endonuclease III YPZ3_1618 SM00525 YPZ3_1618 YPZ3_1621 SM00357 Cold shock protein domain YPZ3_1621 SM00955 YPZ3_1621 YPZ3_1625 SM01007 Class II Aldolase and Adducin N-terminal domain YPZ3_1627 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family YPZ3_1628 SM00028 Tetratricopeptide repeats YPZ3_1630 SM00014 Acid phosphatase homologues YPZ3_1635 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPZ3_1635 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPZ3_1635 SM00493 YPZ3_1635 YPZ3_1637 SM00822 YPZ3_1637 YPZ3_1639 SM00363 S4 RNA-binding domain YPZ3_1641 SM00481 DNA polymerase alpha chain like domain YPZ3_1648 SM00749 bacterial OsmY and nodulation domain YPZ3_1658 SM00155 Phospholipase D. Active site motifs. YPZ3_1660 SM00382 ATPases associated with a variety of cellular activities YPZ3_1661 SM00382 ATPases associated with a variety of cellular activities YPZ3_1668 SM00382 ATPases associated with a variety of cellular activities YPZ3_1670 SM00528 Domain in histone-like proteins of HNS family YPZ3_1671 SM00984 UDP binding domain YPZ3_1672 SM00448 cheY-homologous receiver domain YPZ3_1679 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPZ3_1679 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPZ3_1679 SM00493 YPZ3_1679 YPZ3_1683 SM00870 YPZ3_1683 YPZ3_1687 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPZ3_1690 SM00763 PrkA AAA domain YPZ3_1698 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPZ3_1709 SM00060 Fibronectin type 3 domain YPZ3_1711 SM01040 BRO family, N-terminal domain YPZ3_1713 SM00232 JAB/MPN domain YPZ3_1715 SM01321 YPZ3_1715 YPZ3_1719 SM00635 Bacterial Ig-like domain 2 YPZ3_1724 SM00635 Bacterial Ig-like domain 2 YPZ3_1737 SM01040 BRO family, N-terminal domain YPZ3_1741 SM00382 ATPases associated with a variety of cellular activities YPZ3_1749 SM00341 Helicase and RNase D C-terminal YPZ3_1749 SM00474 3'-5' exonuclease YPZ3_1753 SM00487 DEAD-like helicases superfamily YPZ3_1753 SM00491 YPZ3_1753 YPZ3_1762 SM00257 Lysin motif YPZ3_1764 SM00382 ATPases associated with a variety of cellular activities YPZ3_1766 SM00382 ATPases associated with a variety of cellular activities YPZ3_1767 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPZ3_1778 SM00836 DALR anticodon binding domain YPZ3_1778 SM01016 Arginyl tRNA synthetase N terminal dom YPZ3_1779 SM00912 haemagglutination activity domain YPZ3_1787 SM00481 DNA polymerase alpha chain like domain YPZ3_1791 SM01321 YPZ3_1791 YPZ3_1802 SM00937 YPZ3_1802 YPZ3_1806 SM01400 YPZ3_1806 YPZ3_1810 SM00450 Rhodanese Homology Domain YPZ3_1817 SM00448 cheY-homologous receiver domain YPZ3_1817 SM00862 Transcriptional regulatory protein, C terminal YPZ3_1818 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPZ3_1818 SM00387 Histidine kinase-like ATPases YPZ3_1818 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_1828 SM00671 Sel1-like repeats. YPZ3_1829 SM00671 Sel1-like repeats. YPZ3_1845 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPZ3_1845 SM00866 YPZ3_1845 YPZ3_1848 SM00382 ATPases associated with a variety of cellular activities YPZ3_1850 SM00382 ATPases associated with a variety of cellular activities YPZ3_1855 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPZ3_1855 SM00866 YPZ3_1855 YPZ3_1866 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPZ3_1866 SM00465 GIY-YIG type nucleases (URI domain) YPZ3_1867 SM00421 helix_turn_helix, Lux Regulon YPZ3_1867 SM00448 cheY-homologous receiver domain YPZ3_1879 SM00382 ATPases associated with a variety of cellular activities YPZ3_1881 SM00062 Bacterial periplasmic substrate-binding proteins YPZ3_1881 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPZ3_1888 SM00342 helix_turn_helix, arabinose operon control protein YPZ3_1891 SM00478 endonuclease III YPZ3_1896 SM00382 ATPases associated with a variety of cellular activities YPZ3_1908 SM00382 ATPases associated with a variety of cellular activities YPZ3_1911 SM01007 Class II Aldolase and Adducin N-terminal domain YPZ3_1915 SM00047 Lysozyme subfamily 2 YPZ3_1924 SM00858 YPZ3_1924 YPZ3_1927 SM00634 Bacterial Ig-like domain (group 1) YPZ3_1928 SM01321 YPZ3_1928 YPZ3_1941 SM01022 YPZ3_1941 YPZ3_1943 SM00487 DEAD-like helicases superfamily YPZ3_1943 SM00490 helicase superfamily c-terminal domain YPZ3_1948 SM00903 Flavin reductase like domain YPZ3_1958 SM00347 helix_turn_helix multiple antibiotic resistance protein YPZ3_1959 SM01091 Transporter associated domain YPZ3_1966 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPZ3_1966 SM00091 PAS domain YPZ3_1966 SM00267 diguanylate cyclase YPZ3_1971 SM00342 helix_turn_helix, arabinose operon control protein YPZ3_1972 SM00382 ATPases associated with a variety of cellular activities YPZ3_1973 SM00090 RIO-like kinase YPZ3_1975 SM00382 ATPases associated with a variety of cellular activities YPZ3_1977 SM00354 helix_turn _helix lactose operon repressor YPZ3_1985 SM00382 ATPases associated with a variety of cellular activities YPZ3_1990 SM00644 YPZ3_1990 YPZ3_1991 SM00346 helix_turn_helix isocitrate lyase regulation YPZ3_2000 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPZ3_2000 SM00245 tail specific protease YPZ3_2001 SM00945 ProQ/FINO family YPZ3_2005 SM00972 Spore Coat Protein U domain YPZ3_2006 SM00972 Spore Coat Protein U domain YPZ3_2009 SM00972 Spore Coat Protein U domain YPZ3_2010 SM01022 YPZ3_2010 YPZ3_2012 SM00382 ATPases associated with a variety of cellular activities YPZ3_2014 SM01005 Alanine racemase, C-terminal domain YPZ3_2018 SM00644 YPZ3_2018 YPZ3_2020 SM00448 cheY-homologous receiver domain YPZ3_2021 SM00448 cheY-homologous receiver domain YPZ3_2022 SM00138 Methyltransferase, chemotaxis proteins YPZ3_2023 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPZ3_2023 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPZ3_2023 SM00319 Homologues of the ligand binding domain of Tar YPZ3_2024 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPZ3_2024 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPZ3_2024 SM00319 Homologues of the ligand binding domain of Tar YPZ3_2027 SM00869 Autotransporter beta-domain YPZ3_2032 SM00260 Two component signalling adaptor domain YPZ3_2033 SM00073 Histidine Phosphotransfer domain YPZ3_2033 SM00260 Two component signalling adaptor domain YPZ3_2033 SM00387 Histidine kinase-like ATPases YPZ3_2033 SM01231 YPZ3_2033 YPZ3_2037 SM00831 Cation transporter/ATPase, N-terminus YPZ3_2039 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPZ3_2039 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPZ3_2039 SM00319 Homologues of the ligand binding domain of Tar YPZ3_2041 SM01038 Beta galactosidase small chain YPZ3_2042 SM00829 Enoylreductase YPZ3_2044 SM00344 helix_turn_helix ASNC type YPZ3_2049 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPZ3_2049 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPZ3_2050 SM00354 helix_turn _helix lactose operon repressor YPZ3_2051 SM01329 YPZ3_2051 YPZ3_2058 SM00448 cheY-homologous receiver domain YPZ3_2058 SM00862 Transcriptional regulatory protein, C terminal YPZ3_2059 SM00387 Histidine kinase-like ATPases YPZ3_2059 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_2060 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. YPZ3_2065 SM00382 ATPases associated with a variety of cellular activities YPZ3_2067 SM00487 DEAD-like helicases superfamily YPZ3_2067 SM00490 helicase superfamily c-terminal domain YPZ3_2067 SM00982 YPZ3_2067 YPZ3_2067 SM01058 CarD-like/TRCF domain YPZ3_2080 SM01321 YPZ3_2080 YPZ3_2087 SM01321 YPZ3_2087 YPZ3_2088 SM00825 Beta-ketoacyl synthase YPZ3_2089 SM00822 YPZ3_2089 YPZ3_2090 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPZ3_2095 SM01321 YPZ3_2095 YPZ3_2096 SM00363 S4 RNA-binding domain YPZ3_2097 SM00316 Ribosomal protein S1-like RNA-binding domain YPZ3_2102 SM00421 helix_turn_helix, Lux Regulon YPZ3_2104 SM00450 Rhodanese Homology Domain YPZ3_2107 SM00421 helix_turn_helix, Lux Regulon YPZ3_2126 SM00354 helix_turn _helix lactose operon repressor YPZ3_2128 SM00382 ATPases associated with a variety of cellular activities YPZ3_2133 SM00912 haemagglutination activity domain YPZ3_2138 SM01329 YPZ3_2138 YPZ3_2140 SM00354 helix_turn _helix lactose operon repressor YPZ3_2142 SM00382 ATPases associated with a variety of cellular activities YPZ3_2144 SM00829 Enoylreductase YPZ3_2154 SM00062 Bacterial periplasmic substrate-binding proteins YPZ3_2154 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPZ3_2156 SM00382 ATPases associated with a variety of cellular activities YPZ3_2157 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPZ3_2157 SM00091 PAS domain YPZ3_2157 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPZ3_2159 SM00382 ATPases associated with a variety of cellular activities YPZ3_2160 SM00387 Histidine kinase-like ATPases YPZ3_2162 SM00912 haemagglutination activity domain YPZ3_2167 SM00382 ATPases associated with a variety of cellular activities YPZ3_2168 SM00382 ATPases associated with a variety of cellular activities YPZ3_2170 SM00052 Putative diguanylate phosphodiesterase YPZ3_2170 SM00267 diguanylate cyclase YPZ3_2177 SM00052 Putative diguanylate phosphodiesterase YPZ3_2181 SM00869 Autotransporter beta-domain YPZ3_2192 SM00235 Zinc-dependent metalloprotease YPZ3_2193 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPZ3_2196 SM01321 YPZ3_2196 YPZ3_2199 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPZ3_2199 SM00387 Histidine kinase-like ATPases YPZ3_2199 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_2199 SM00448 cheY-homologous receiver domain YPZ3_2200 SM00382 ATPases associated with a variety of cellular activities YPZ3_2206 SM00448 cheY-homologous receiver domain YPZ3_2206 SM00862 Transcriptional regulatory protein, C terminal YPZ3_2208 SM00354 helix_turn _helix lactose operon repressor YPZ3_2213 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPZ3_2214 SM00257 Lysin motif YPZ3_2214 SM00634 Bacterial Ig-like domain (group 1) YPZ3_2216 SM00642 Alpha-amylase domain YPZ3_2217 SM00642 Alpha-amylase domain YPZ3_2226 SM00382 ATPases associated with a variety of cellular activities YPZ3_2230 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPZ3_2241 SM00354 helix_turn _helix lactose operon repressor YPZ3_2254 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_2254 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPZ3_2255 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPZ3_2262 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPZ3_2269 SM00354 helix_turn _helix lactose operon repressor YPZ3_2273 SM01359 YPZ3_2273 YPZ3_2273 SM01360 YPZ3_2273 YPZ3_2281 SM00382 ATPases associated with a variety of cellular activities YPZ3_2288 SM00382 ATPases associated with a variety of cellular activities YPZ3_2290 SM00421 helix_turn_helix, Lux Regulon YPZ3_2293 SM00729 Elongator protein 3, MiaB family, Radical SAM YPZ3_2295 SM00936 Penicillin-binding protein 5, C-terminal domain YPZ3_2306 SM00382 ATPases associated with a variety of cellular activities YPZ3_2309 SM00062 Bacterial periplasmic substrate-binding proteins YPZ3_2311 SM00116 Domain in cystathionine beta-synthase and other proteins. YPZ3_2311 SM01091 Transporter associated domain YPZ3_2314 SM00729 Elongator protein 3, MiaB family, Radical SAM YPZ3_2322 SM01321 YPZ3_2322 YPZ3_2325 SM01081 Putative carbohydrate binding domain YPZ3_2331 SM00382 ATPases associated with a variety of cellular activities YPZ3_2336 SM00382 ATPases associated with a variety of cellular activities YPZ3_2347 SM00382 ATPases associated with a variety of cellular activities YPZ3_2348 SM00382 ATPases associated with a variety of cellular activities YPZ3_2352 SM00988 UreE urease accessory protein, N-terminal domain YPZ3_2365 SM00342 helix_turn_helix, arabinose operon control protein YPZ3_2370 SM00448 cheY-homologous receiver domain YPZ3_2370 SM00862 Transcriptional regulatory protein, C terminal YPZ3_2371 SM00387 Histidine kinase-like ATPases YPZ3_2371 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_2379 SM00796 Allophanate hydrolase subunit 1 YPZ3_2380 SM00797 Allophanate hydrolase subunit 2 YPZ3_2385 SM00986 Uracil DNA glycosylase superfamily YPZ3_2385 SM00987 UreE urease accessory protein, C-terminal domain YPZ3_2388 SM00248 ankyrin repeats YPZ3_2389 SM00487 DEAD-like helicases superfamily YPZ3_2389 SM00490 helicase superfamily c-terminal domain YPZ3_2399 SM00358 Double-stranded RNA binding motif YPZ3_2399 SM00535 Ribonuclease III family YPZ3_2403 SM00382 ATPases associated with a variety of cellular activities YPZ3_2406 SM01321 YPZ3_2406 YPZ3_2411 SM00062 Bacterial periplasmic substrate-binding proteins YPZ3_2412 SM01211 YPZ3_2412 YPZ3_2415 SM01321 YPZ3_2415 YPZ3_2416 SM00387 Histidine kinase-like ATPases YPZ3_2416 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_2418 SM00382 ATPases associated with a variety of cellular activities YPZ3_2418 SM00448 cheY-homologous receiver domain YPZ3_2420 SM00938 Nitrogen regulatory protein P-II YPZ3_2430 SM01321 YPZ3_2430 YPZ3_2436 SM00271 DnaJ molecular chaperone homology domain YPZ3_2443 SM00869 Autotransporter beta-domain YPZ3_2444 SM00247 Beta/gamma crystallins YPZ3_2445 SM00562 YPZ3_2445 YPZ3_2447 SM00028 Tetratricopeptide repeats YPZ3_2448 SM00530 Helix-turn-helix XRE-family like proteins YPZ3_2452 SM00564 beta-propeller repeat YPZ3_2456 SM00116 Domain in cystathionine beta-synthase and other proteins. YPZ3_2456 SM01240 YPZ3_2456 YPZ3_2458 SM01321 YPZ3_2458 YPZ3_2468 SM00046 Diacylglycerol kinase catalytic domain (presumed) YPZ3_2471 SM00448 cheY-homologous receiver domain YPZ3_2471 SM00862 Transcriptional regulatory protein, C terminal YPZ3_2472 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPZ3_2472 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_2477 SM00382 ATPases associated with a variety of cellular activities YPZ3_2478 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPZ3_2484 SM00924 MgtE intracellular N domain YPZ3_2489 SM00382 ATPases associated with a variety of cellular activities YPZ3_2496 SM01321 YPZ3_2496 YPZ3_2501 SM00563 Phosphate acyltransferases YPZ3_2503 SM00195 Dual specificity phosphatase, catalytic domain YPZ3_2503 SM00404 Protein tyrosine phosphatase, catalytic domain motif YPZ3_2506 SM00382 ATPases associated with a variety of cellular activities YPZ3_2512 SM01217 YPZ3_2512 YPZ3_2518 SM00869 Autotransporter beta-domain YPZ3_2526 SM00052 Putative diguanylate phosphodiesterase YPZ3_2528 SM00382 ATPases associated with a variety of cellular activities YPZ3_2531 SM00062 Bacterial periplasmic substrate-binding proteins YPZ3_2540 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPZ3_2542 SM00342 helix_turn_helix, arabinose operon control protein YPZ3_2547 SM00825 Beta-ketoacyl synthase YPZ3_2554 SM00463 Small MutS-related domain YPZ3_2555 SM00855 Phosphoglycerate mutase family YPZ3_2568 SM00382 ATPases associated with a variety of cellular activities YPZ3_2580 SM00382 ATPases associated with a variety of cellular activities YPZ3_2594 SM00382 ATPases associated with a variety of cellular activities YPZ3_2594 SM01086 C-terminal, D2-small domain, of ClpB protein YPZ3_2603 SM00421 helix_turn_helix, Lux Regulon YPZ3_2607 SM00382 ATPases associated with a variety of cellular activities YPZ3_2610 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_2630 SM01321 YPZ3_2630 YPZ3_2633 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPZ3_2633 SM00292 breast cancer carboxy-terminal domain YPZ3_2633 SM00532 Ligase N family YPZ3_2634 SM00771 ZipA, C-terminal domain (FtsZ-binding) YPZ3_2639 SM01321 YPZ3_2639 YPZ3_2640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPZ3_2640 SM00387 Histidine kinase-like ATPases YPZ3_2640 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_2641 SM00448 cheY-homologous receiver domain YPZ3_2641 SM00862 Transcriptional regulatory protein, C terminal YPZ3_2643 SM00382 ATPases associated with a variety of cellular activities YPZ3_2644 SM00450 Rhodanese Homology Domain YPZ3_2648 SM00327 von Willebrand factor (vWF) type A domain YPZ3_2649 SM00387 Histidine kinase-like ATPases YPZ3_2649 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_2650 SM00448 cheY-homologous receiver domain YPZ3_2650 SM00862 Transcriptional regulatory protein, C terminal YPZ3_2653 SM00382 ATPases associated with a variety of cellular activities YPZ3_2661 SM00364 Leucine-rich repeats, bacterial type YPZ3_2664 SM01130 YPZ3_2664 YPZ3_2668 SM00869 Autotransporter beta-domain YPZ3_2673 SM00919 Malic enzyme, NAD binding domain YPZ3_2673 SM01274 YPZ3_2673 YPZ3_2677 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_2679 SM00421 helix_turn_helix, Lux Regulon YPZ3_2679 SM00448 cheY-homologous receiver domain YPZ3_2685 SM00382 ATPases associated with a variety of cellular activities YPZ3_2696 SM01321 YPZ3_2696 YPZ3_2698 SM01130 YPZ3_2698 YPZ3_2706 SM01321 YPZ3_2706 YPZ3_2707 SM00840 YPZ3_2707 YPZ3_2710 SM01001 AIR carboxylase YPZ3_2713 SM00382 ATPases associated with a variety of cellular activities YPZ3_2715 SM00822 YPZ3_2715 YPZ3_2717 SM00244 prohibitin homologues YPZ3_2719 SM00422 helix_turn_helix, mercury resistance YPZ3_2748 SM00387 Histidine kinase-like ATPases YPZ3_2749 SM00493 YPZ3_2749 YPZ3_2751 SM00382 ATPases associated with a variety of cellular activities YPZ3_2765 SM00938 Nitrogen regulatory protein P-II YPZ3_2766 SM00382 ATPases associated with a variety of cellular activities YPZ3_2767 SM00382 ATPases associated with a variety of cellular activities YPZ3_2768 SM00344 helix_turn_helix ASNC type YPZ3_2776 SM00382 ATPases associated with a variety of cellular activities YPZ3_2776 SM00464 Found in ATP-dependent protease La (LON) YPZ3_2777 SM00382 ATPases associated with a variety of cellular activities YPZ3_2777 SM00994 ClpX C4-type zinc finger YPZ3_2777 SM01086 C-terminal, D2-small domain, of ClpB protein YPZ3_2793 SM00981 YPZ3_2793 YPZ3_2795 SM00861 Transketolase, pyrimidine binding domain YPZ3_2796 SM01321 YPZ3_2796 YPZ3_2805 SM01321 YPZ3_2805 YPZ3_2808 SM01323 YPZ3_2808 YPZ3_2813 SM01321 YPZ3_2813 YPZ3_2816 SM00642 Alpha-amylase domain YPZ3_2820 SM00091 PAS domain YPZ3_2820 SM00387 Histidine kinase-like ATPases YPZ3_2820 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_2821 SM00448 cheY-homologous receiver domain YPZ3_2821 SM00862 Transcriptional regulatory protein, C terminal YPZ3_2831 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YPZ3_2835 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins YPZ3_2844 SM00900 YPZ3_2844 YPZ3_2853 SM00710 Parallel beta-helix repeats YPZ3_2853 SM00912 haemagglutination activity domain YPZ3_2858 SM00382 ATPases associated with a variety of cellular activities YPZ3_2860 SM00382 ATPases associated with a variety of cellular activities YPZ3_2863 SM00062 Bacterial periplasmic substrate-binding proteins YPZ3_2870 SM00347 helix_turn_helix multiple antibiotic resistance protein YPZ3_2873 SM00967 RNA 2'-O ribose methyltransferase substrate binding YPZ3_2875 SM01144 YPZ3_2875 YPZ3_2876 SM00881 CoA binding domain YPZ3_2877 SM00155 Phospholipase D. Active site motifs. YPZ3_2880 SM00382 ATPases associated with a variety of cellular activities YPZ3_2880 SM01086 C-terminal, D2-small domain, of ClpB protein YPZ3_2882 SM00363 S4 RNA-binding domain YPZ3_2885 SM01321 YPZ3_2885 YPZ3_2886 SM00830 Chorismate mutase type II YPZ3_2888 SM00382 ATPases associated with a variety of cellular activities YPZ3_2890 SM00830 Chorismate mutase type II YPZ3_2892 SM00448 cheY-homologous receiver domain YPZ3_2892 SM00850 LytTr DNA-binding domain YPZ3_2896 SM01321 YPZ3_2896 YPZ3_2900 SM00382 ATPases associated with a variety of cellular activities YPZ3_2900 SM00962 SRP54-type protein, GTPase domain YPZ3_2900 SM00963 SRP54-type protein, helical bundle domain YPZ3_2902 SM01091 Transporter associated domain YPZ3_2903 SM01321 YPZ3_2903 YPZ3_2908 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YPZ3_2910 SM00382 ATPases associated with a variety of cellular activities YPZ3_2916 SM00861 Transketolase, pyrimidine binding domain YPZ3_2919 SM00382 ATPases associated with a variety of cellular activities YPZ3_2927 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_2928 SM01007 Class II Aldolase and Adducin N-terminal domain YPZ3_2929 SM00420 helix_turn_helix, Deoxyribose operon repressor YPZ3_2929 SM01134 YPZ3_2929 YPZ3_2931 SM01321 YPZ3_2931 YPZ3_2932 SM00382 ATPases associated with a variety of cellular activities YPZ3_2942 SM01235 YPZ3_2942 YPZ3_2943 SM00062 Bacterial periplasmic substrate-binding proteins YPZ3_2944 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor YPZ3_2948 SM01120 YPZ3_2948 YPZ3_2951 SM00829 Enoylreductase YPZ3_2953 SM00533 DNA-binding domain of DNA mismatch repair MUTS family YPZ3_2953 SM00534 ATPase domain of DNA mismatch repair MUTS family YPZ3_2955 SM00257 Lysin motif YPZ3_2974 SM01192 YPZ3_2974 YPZ3_2974 SM01193 YPZ3_2974 YPZ3_2977 SM00954 Region found in RelA / SpoT proteins YPZ3_2978 SM00073 Histidine Phosphotransfer domain YPZ3_2978 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPZ3_2978 SM00387 Histidine kinase-like ATPases YPZ3_2978 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_2978 SM00448 cheY-homologous receiver domain YPZ3_2979 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPZ3_2980 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPZ3_2989 SM00382 ATPases associated with a variety of cellular activities YPZ3_2991 SM00487 DEAD-like helicases superfamily YPZ3_2991 SM00490 helicase superfamily c-terminal domain YPZ3_2991 SM00847 Helicase associated domain (HA2) Add an annotation YPZ3_3003 SM00382 ATPases associated with a variety of cellular activities YPZ3_3004 SM00947 Carbonic anhydrase YPZ3_3013 SM01321 YPZ3_3013 YPZ3_3017 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPZ3_3017 SM00895 YPZ3_3017 YPZ3_3020 SM00644 YPZ3_3020 YPZ3_3025 SM01240 YPZ3_3025 YPZ3_3028 SM01321 YPZ3_3028 YPZ3_3030 SM00382 ATPases associated with a variety of cellular activities YPZ3_3047 SM00382 ATPases associated with a variety of cellular activities YPZ3_3048 SM00382 ATPases associated with a variety of cellular activities YPZ3_3051 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPZ3_3051 SM00866 YPZ3_3051 YPZ3_3056 SM00382 ATPases associated with a variety of cellular activities YPZ3_3057 SM00382 ATPases associated with a variety of cellular activities YPZ3_3059 SM00072 Guanylate kinase homologues. YPZ3_3060 SM00849 Metallo-beta-lactamase superfamily YPZ3_3061 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPZ3_3064 SM00382 ATPases associated with a variety of cellular activities YPZ3_3078 SM00530 Helix-turn-helix XRE-family like proteins YPZ3_3079 SM00487 DEAD-like helicases superfamily YPZ3_3079 SM00490 helicase superfamily c-terminal domain YPZ3_3080 SM00028 Tetratricopeptide repeats YPZ3_3081 SM00316 Ribosomal protein S1-like RNA-binding domain YPZ3_3081 SM00322 K homology RNA-binding domain YPZ3_3090 SM00382 ATPases associated with a variety of cellular activities YPZ3_3090 SM01086 C-terminal, D2-small domain, of ClpB protein YPZ3_3101 SM00860 SMI1 / KNR4 family YPZ3_3102 SM00530 Helix-turn-helix XRE-family like proteins YPZ3_3109 SM00342 helix_turn_helix, arabinose operon control protein YPZ3_3112 SM01133 YPZ3_3112 YPZ3_3114 SM00062 Bacterial periplasmic substrate-binding proteins YPZ3_3117 SM00382 ATPases associated with a variety of cellular activities YPZ3_3123 SM00382 ATPases associated with a variety of cellular activities YPZ3_3131 SM01321 YPZ3_3131 YPZ3_3133 SM00849 Metallo-beta-lactamase superfamily YPZ3_3137 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPZ3_3137 SM00895 YPZ3_3137 YPZ3_3142 SM00878 Biotin carboxylase C-terminal domain YPZ3_3147 SM00829 Enoylreductase YPZ3_3148 SM00052 Putative diguanylate phosphodiesterase YPZ3_3148 SM00267 diguanylate cyclase YPZ3_3153 SM00316 Ribosomal protein S1-like RNA-binding domain YPZ3_3178 SM00642 Alpha-amylase domain YPZ3_3180 SM00354 helix_turn _helix lactose operon repressor YPZ3_3188 SM00382 ATPases associated with a variety of cellular activities YPZ3_3192 SM00116 Domain in cystathionine beta-synthase and other proteins. YPZ3_3194 SM00382 ATPases associated with a variety of cellular activities YPZ3_3200 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPZ3_3201 SM01321 YPZ3_3201 YPZ3_3202 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPZ3_3212 SM00729 Elongator protein 3, MiaB family, Radical SAM YPZ3_3213 SM00073 Histidine Phosphotransfer domain YPZ3_3213 SM00091 PAS domain YPZ3_3213 SM00387 Histidine kinase-like ATPases YPZ3_3213 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_3213 SM00448 cheY-homologous receiver domain YPZ3_3216 SM00749 bacterial OsmY and nodulation domain YPZ3_3224 SM00382 ATPases associated with a variety of cellular activities YPZ3_3229 SM01321 YPZ3_3229 YPZ3_3237 SM00116 Domain in cystathionine beta-synthase and other proteins. YPZ3_3237 SM01091 Transporter associated domain YPZ3_3252 SM00387 Histidine kinase-like ATPases YPZ3_3252 SM00388 His Kinase A (phosphoacceptor) domain YPZ3_3253 SM00448 cheY-homologous receiver domain YPZ3_3253 SM00862 Transcriptional regulatory protein, C terminal YPZ3_3257 SM00382 ATPases associated with a variety of cellular activities YPZ3_3261 SM00316 Ribosomal protein S1-like RNA-binding domain YPZ3_3261 SM00322 K homology RNA-binding domain YPZ3_3273 SM00382 ATPases associated with a variety of cellular activities YPZ3_3282 SM00912 haemagglutination activity domain YPZ3_3283 SM01018 B12 binding domain YPZ3_3284 SM00346 helix_turn_helix isocitrate lyase regulation YPZ3_3290 SM00798 AICARFT/IMPCHase bienzyme YPZ3_3290 SM00851 MGS-like domain YPZ3_3291 SM01209 YPZ3_3291 YPZ3_3291 SM01210 YPZ3_3291 YPZ3_3303 SM00876 Biotin and Thiamin Synthesis associated domain YPZ3_3304 SM01321 YPZ3_3304 YPZ3_3305 SM00663 RNA polymerase I subunit A N-terminus YPZ3_3310 SM00649 Ribosomal protein L11/L12 YPZ3_3311 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YPZ3_3311 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPZ3_3314 SM00382 ATPases associated with a variety of cellular activities YPZ3_3322 SM01321 YPZ3_3322 YPZ3_3328 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YPZ3_3328 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPZ3_3329 SM01004 Delta-aminolevulinic acid dehydratase YPZ3_3331 SM00382 ATPases associated with a variety of cellular activities YPZ3_3349 SM00382 ATPases associated with a variety of cellular activities YPZ3_3360 SM00382 ATPases associated with a variety of cellular activities YPZ3_3361 SM00382 ATPases associated with a variety of cellular activities YPZ3_3366 SM01321 YPZ3_3366 YPZ3_3369 SM00382 ATPases associated with a variety of cellular activities YPZ3_3370 SM00382 ATPases associated with a variety of cellular activities YPZ3_3370 SM00962 SRP54-type protein, GTPase domain YPZ3_3370 SM00963 SRP54-type protein, helical bundle domain YPZ3_3388 SM00341 Helicase and RNase D C-terminal YPZ3_3388 SM00487 DEAD-like helicases superfamily YPZ3_3388 SM00490 helicase superfamily c-terminal domain YPZ3_3388 SM00956 YPZ3_3388 YPZ3_3401 SM01219 YPZ3_3401 YPZ3_3407 SM01321 YPZ3_3407 YPZ3_3417 SM00984 UDP binding domain YPZ3_3421 SM00357 Cold shock protein domain YPZ3_3421 SM00382 ATPases associated with a variety of cellular activities YPZ3_3421 SM00959 Rho termination factor, N-terminal domain YPZ3_3423 SM00487 DEAD-like helicases superfamily YPZ3_3423 SM00490 helicase superfamily c-terminal domain YPZ3_3443 SM00382 ATPases associated with a variety of cellular activities YPZ3_3448 SM00382 ATPases associated with a variety of cellular activities YPZ3_3461 SM00382 ATPases associated with a variety of cellular activities YPZ3_3466 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPZ3_3481 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_3484 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPZ3_3484 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPZ3_3484 SM01358 YPZ3_3484 YPZ3_3499 SM00642 Alpha-amylase domain YPZ3_3513 SM00387 Histidine kinase-like ATPases YPZ3_3513 SM00433 TopoisomeraseII YPZ3_3515 SM00480 DNA polymerase III beta subunit YPZ3_3516 SM00382 ATPases associated with a variety of cellular activities YPZ3_3516 SM00760 Bacterial dnaA protein helix-turn-helix domain YPZ3_3525 SM00062 Bacterial periplasmic substrate-binding proteins YPZ3_3528 SM00382 ATPases associated with a variety of cellular activities YPZ3_3535 SM00382 ATPases associated with a variety of cellular activities YPZ3_3543 SM01228 YPZ3_3543 YPZ3_pCD0005 SM00470 ParB-like nuclease domain YPZ3_pCD0015 SM00364 Leucine-rich repeats, bacterial type YPZ3_pCD0027 SM00382 ATPases associated with a variety of cellular activities YPZ3_pCD0035 SM00342 helix_turn_helix, arabinose operon control protein YPZ3_pCD0049 SM00194 Protein tyrosine phosphatase, catalytic domain YPZ3_pCD0049 SM00404 Protein tyrosine phosphatase, catalytic domain motif YPZ3_pCD0052 SM00220 Serine/Threonine protein kinases, catalytic domain YPZ3_pCD0061 SM00857 Resolvase, N terminal domain YPZ3_pMT0002 SM00382 ATPases associated with a variety of cellular activities YPZ3_pMT0008 SM00232 JAB/MPN domain YPZ3_pMT0013 SM00635 Bacterial Ig-like domain 2 YPZ3_pMT0019 SM00635 Bacterial Ig-like domain 2 YPZ3_pMT0026 SM00382 ATPases associated with a variety of cellular activities YPZ3_pMT0027 SM00470 ParB-like nuclease domain YPZ3_pMT0028 SM00470 ParB-like nuclease domain YPZ3_pMT0029 SM00487 DEAD-like helicases superfamily YPZ3_pMT0029 SM00490 helicase superfamily c-terminal domain YPZ3_pMT0034 SM01321 YPZ3_pMT0034 YPZ3_pMT0039 SM00062 Bacterial periplasmic substrate-binding proteins YPZ3_pMT0045 SM00244 prohibitin homologues YPZ3_pMT0047 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPZ3_pMT0047 SM00475 5'-3' exonuclease YPZ3_pMT0052 SM00481 DNA polymerase alpha chain like domain YPZ3_pMT0060 SM00342 helix_turn_helix, arabinose operon control protein YPZ3_pMT0065 SM00155 Phospholipase D. Active site motifs. YPZ3_pMT0068 SM00857 Resolvase, N terminal domain YPZ3_pMT0070 SM00470 ParB-like nuclease domain YPZ3_pMT0071 SM00382 ATPases associated with a variety of cellular activities YPZ3_pMT0076 SM00470 ParB-like nuclease domain YPZ3_pPCP0002 SM00382 ATPases associated with a variety of cellular activities