locus-tag class description YPC_0001 IPR008254 Flavodoxin/nitric oxide synthase YPC_0001 IPR029039 Flavoprotein-like superfamily YPC_0002 IPR011991 ArsR-like helix-turn-helix domain YPC_0002 IPR000485 AsnC-type HTH domain YPC_0002 IPR036390 Winged helix DNA-binding domain superfamily YPC_0002 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0002 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPC_0002 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPC_0002 IPR011008 Dimeric alpha-beta barrel YPC_0002 IPR019888 Transcription regulator AsnC-type YPC_0003 IPR006195 Aminoacyl-tRNA synthetase, class II YPC_0003 IPR004618 Aspartate--ammonia ligase YPC_0004 IPR023481 Uncharacterised protein family ViaA YPC_0004 IPR008912 Uncharacterised protein family CoxE-like YPC_0004 IPR002035 von Willebrand factor, type A YPC_0004 IPR036465 von Willebrand factor A-like domain superfamily YPC_0005 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0005 IPR041538 ATPase RavA-like, AAA lid domain YPC_0005 IPR003593 AAA+ ATPase domain YPC_0005 IPR023671 ATPase RavA YPC_0005 IPR011704 ATPase, dynein-related, AAA domain YPC_0005 IPR022547 ATPase, RavA, C-terminal YPC_0006 IPR023051 Potassium uptake protein, low affinity, Kup YPC_0006 IPR003855 Potassium transporter YPC_0007 IPR023064 D-ribose pyranase YPC_0007 IPR023750 RbsD-like superfamily YPC_0007 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU YPC_0008 IPR011877 Ribokinase YPC_0008 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPC_0008 IPR002139 Ribokinase/fructokinase YPC_0008 IPR029056 Ribokinase-like YPC_0008 IPR011611 Carbohydrate kinase PfkB YPC_0010 IPR004638 Drug resistance transporter EmrB-like YPC_0010 IPR036259 MFS transporter superfamily YPC_0010 IPR020846 Major facilitator superfamily domain YPC_0010 IPR011701 Major facilitator superfamily YPC_0011 IPR008920 Transcription regulator FadR/GntR, C-terminal YPC_0011 IPR000524 Transcription regulator HTH, GntR YPC_0011 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0011 IPR036390 Winged helix DNA-binding domain superfamily YPC_0011 IPR011711 GntR, C-terminal YPC_0019 IPR033752 MetA family YPC_0019 IPR005697 Homoserine O-succinyltransferase MetA YPC_0019 IPR029062 Class I glutamine amidotransferase-like YPC_0021 IPR006252 Malate synthase A YPC_0021 IPR001465 Malate synthase YPC_0021 IPR019830 Malate synthase, conserved site YPC_0021 IPR011076 Malate synthase-like superfamily YPC_0022 IPR006254 Isocitrate lyase YPC_0022 IPR039556 ICL/PEPM domain YPC_0022 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPC_0022 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site YPC_0022 IPR040442 Pyruvate kinase-like domain superfamily YPC_0024 IPR010452 Isocitrate dehydrogenase kinasephosphatase YPC_0027 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain YPC_0027 IPR006158 Cobalamin (vitamin B12)-binding domain YPC_0027 IPR036724 Cobalamin-binding domain superfamily YPC_0027 IPR011822 Cobalamin-dependent methionine synthase YPC_0027 IPR003726 Homocysteine-binding domain YPC_0027 IPR036589 Homocysteine-binding domain superfamily YPC_0027 IPR033706 Methionine synthase, B12-binding domain YPC_0027 IPR036594 Methionine synthase domain YPC_0027 IPR000489 Pterin-binding domain YPC_0027 IPR004223 Vitamin B12-dependent methionine synthase, activation domain YPC_0027 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily YPC_0027 IPR011005 Dihydropteroate synthase-like YPC_0028 IPR012334 Pectin lyase fold YPC_0028 IPR008638 Filamentous haemagglutinin, N-terminal YPC_0028 IPR025157 Hemagglutinin repeat YPC_0028 IPR011050 Pectin lyase fold/virulence factor YPC_0029 IPR035251 ShlB, POTRA domain YPC_0029 IPR005565 Haemolysin activator HlyB, C-terminal YPC_0029 IPR013686 Polypeptide-transport-associated, ShlB-type YPC_0029 IPR034746 POTRA domain YPC_0029 IPR027282 Two partner secretion pathway transporter YPC_0030 IPR005565 Haemolysin activator HlyB, C-terminal YPC_0030 IPR013686 Polypeptide-transport-associated, ShlB-type YPC_0030 IPR034746 POTRA domain YPC_0030 IPR035251 ShlB, POTRA domain YPC_0030 IPR027282 Two partner secretion pathway transporter YPC_0032 IPR001048 Aspartate/glutamate/uridylate kinase YPC_0032 IPR018042 Aspartate kinase, conserved site YPC_0032 IPR005260 Aspartate kinase, monofunctional class YPC_0032 IPR001341 Aspartate kinase YPC_0032 IPR002912 ACT domain YPC_0032 IPR036393 Acetylglutamate kinase-like superfamily YPC_0032 IPR041745 Lysine-sensitive aspartokinase 3, N-terminal catalytic domain YPC_0033 IPR035476 Phosphoglucose isomerase, SIS domain 1 YPC_0033 IPR018189 Phosphoglucose isomerase, conserved site YPC_0033 IPR023096 Phosphoglucose isomerase, C-terminal YPC_0033 IPR035482 Phosphoglucose isomerase, SIS domain 2 YPC_0033 IPR001672 Phosphoglucose isomerase (PGI) YPC_0034 IPR009315 Phosphate-starvation-induced PsiE YPC_0034 IPR020948 Phosphate-starvation-induced PsiE-like YPC_0035 IPR035906 MetI-like superfamily YPC_0035 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_0036 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_0036 IPR029345 Maltose transport system permease protein MalF, P2 domain YPC_0036 IPR035277 MalF, N-terminal YPC_0036 IPR030156 Maltose/maltodextrin transport system permease protein MalF-like YPC_0036 IPR035906 MetI-like superfamily YPC_0037 IPR006061 Solute-binding family 1, conserved site YPC_0037 IPR006059 Bacterial extracellular solute-binding protein YPC_0037 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein YPC_0039 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0039 IPR015855 ABC transporter, maltose/maltodextrin import, MalK YPC_0039 IPR017871 ABC transporter, conserved site YPC_0039 IPR003439 ABC transporter-like YPC_0039 IPR003593 AAA+ ATPase domain YPC_0039 IPR040582 MalK, OB fold domain YPC_0039 IPR008995 Molybdate/tungstate binding, C-terminal YPC_0040 IPR036998 Porin, LamB-type superfamily YPC_0040 IPR003192 Porin, LamB-type YPC_0040 IPR023738 Maltoporin YPC_0041 IPR010794 Maltose operon periplasmic YPC_0044 IPR036624 Hcp1-like superfamily YPC_0044 IPR008514 Type VI secretion system effector, Hcp YPC_0049 IPR036397 Ribonuclease H superfamily YPC_0049 IPR012337 Ribonuclease H-like superfamily YPC_0049 IPR006120 Resolvase, HTH domain YPC_0049 IPR001584 Integrase, catalytic core YPC_0049 IPR017894 HTH domain, IS21 transposase-type YPC_0050 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0050 IPR002611 IstB-like ATP-binding protein YPC_0050 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_0050 IPR003593 AAA+ ATPase domain YPC_0050 IPR001270 ClpA/B family YPC_0052 IPR001584 Integrase, catalytic core YPC_0052 IPR012337 Ribonuclease H-like superfamily YPC_0052 IPR038965 Transposase InsF-like YPC_0052 IPR025948 HTH-like domain YPC_0052 IPR036397 Ribonuclease H superfamily YPC_0054 IPR001034 DeoR-type HTH domain YPC_0054 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0054 IPR036390 Winged helix DNA-binding domain superfamily YPC_0054 IPR037171 NagB/RpiA transferase-like YPC_0054 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPC_0054 IPR014036 DeoR C-terminal sensor domain YPC_0055 IPR022732 Peptidase S54, GlpG peptidase, N-terminal YPC_0055 IPR022764 Peptidase S54, rhomboid domain YPC_0055 IPR035952 Rhomboid-like superfamily YPC_0055 IPR023662 Rhomboid protease GlpG YPC_0055 IPR038236 GlpG peptidase, N-terminal domain superfamily YPC_0056 IPR001763 Rhodanese-like domain YPC_0056 IPR023695 Thiosulfate sulfurtransferase, bacterial YPC_0056 IPR036873 Rhodanese-like domain superfamily YPC_0057 IPR016032 Signal transduction response regulator, C-terminal effector YPC_0057 IPR011990 Tetratricopeptide-like helical domain superfamily YPC_0057 IPR041617 MalT-like TPR region YPC_0057 IPR023768 Transcriptional regulator HTH-type, MalT YPC_0057 IPR000792 Transcription regulator LuxR, C-terminal YPC_0057 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0057 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0060 IPR003385 Glycoside hydrolase, family 77 YPC_0060 IPR017853 Glycoside hydrolase superfamily YPC_0062 IPR017726 Fe/S biogenesis protein NfuA YPC_0062 IPR000361 FeS cluster biogenesis YPC_0062 IPR034904 Fe-S cluster assembly domain superfamily YPC_0062 IPR035903 HesB-like domain superfamily YPC_0062 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal YPC_0063 IPR029057 Phosphoribosyltransferase-like YPC_0063 IPR005222 Competence protein ComF YPC_0063 IPR000836 Phosphoribosyltransferase domain YPC_0064 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase YPC_0064 IPR000073 Alpha/beta hydrolase fold-1 YPC_0064 IPR029058 Alpha/Beta hydrolase fold YPC_0065 IPR010854 Domain of unknown function DUF1471 YPC_0065 IPR036275 YdgH-like superfamily YPC_0065 IPR025543 Dodecin-like YPC_0066 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0066 IPR015102 Transcriptional regulator HTH-type, FeoC YPC_0066 IPR023732 Probable [Fe-S]-dependent transcriptional repressor YPC_0066 IPR036390 Winged helix DNA-binding domain superfamily YPC_0067 IPR011640 Ferrous iron transport protein B, C-terminal YPC_0067 IPR030389 FeoB-type guanine nucleotide-binding (G) domain YPC_0067 IPR041069 FeoB, cytosolic helical domain YPC_0067 IPR003373 Ferrous iron transport protein B YPC_0067 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain YPC_0067 IPR005225 Small GTP-binding protein domain YPC_0067 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0068 IPR038157 Ferrous iron transporter, core domain YPC_0068 IPR008988 Transcriptional repressor, C-terminal YPC_0068 IPR007167 Ferrous iron transporter FeoA domain YPC_0070 IPR018974 Tex-like protein, N-terminal YPC_0070 IPR037027 YqgF/RNase H-like domain superfamily YPC_0070 IPR041692 HHH domain 9 YPC_0070 IPR003029 S1 domain YPC_0070 IPR023323 Tex-like domain superfamily YPC_0070 IPR023319 Tex-like protein, HTH domain superfamily YPC_0070 IPR032639 Tex protein, YqgF-like domain YPC_0070 IPR006641 YqgF/RNase H-like domain YPC_0070 IPR022967 RNA-binding domain, S1 YPC_0070 IPR010994 RuvA domain 2-like YPC_0070 IPR012340 Nucleic acid-binding, OB-fold YPC_0070 IPR012337 Ribonuclease H-like superfamily YPC_0071 IPR018151 Transcription elongation factor, GreA/GreB, conserved site YPC_0071 IPR028624 Transcription elongation factor GreA/GreB YPC_0071 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPC_0071 IPR023459 Transcription elongation factor GreA/GreB family YPC_0071 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal YPC_0071 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily YPC_0071 IPR006358 Transcription elongation factor GreB YPC_0071 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily YPC_0072 IPR016032 Signal transduction response regulator, C-terminal effector YPC_0072 IPR001789 Signal transduction response regulator, receiver domain YPC_0072 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0072 IPR001867 OmpR/PhoB-type DNA-binding domain YPC_0072 IPR039420 Transcriptional regulatory protein WalR-like YPC_0072 IPR011006 CheY-like superfamily YPC_0073 IPR003660 HAMP domain YPC_0073 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_0073 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_0073 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_0073 IPR003594 Histidine kinase/HSP90-like ATPase YPC_0073 IPR005467 Histidine kinase domain YPC_0073 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_0074 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal YPC_0074 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site YPC_0074 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal YPC_0074 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising YPC_0075 IPR000397 Heat shock protein Hsp33 YPC_0075 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily YPC_0075 IPR016153 Heat shock protein Hsp33, N-terminal YPC_0075 IPR016154 Heat shock protein Hsp33, C-terminal YPC_0076 IPR036986 RNA-binding S4 domain superfamily YPC_0076 IPR002942 RNA-binding S4 domain YPC_0076 IPR025708 Heat shock protein 15 YPC_0077 IPR041492 Haloacid dehalogenase-like hydrolase YPC_0077 IPR036412 HAD-like superfamily YPC_0077 IPR006439 HAD hydrolase, subfamily IA YPC_0077 IPR023214 HAD superfamily YPC_0078 IPR010771 Intracellular growth attenuator IgaA YPC_0079 IPR020084 NUDIX hydrolase, conserved site YPC_0079 IPR000086 NUDIX hydrolase domain YPC_0079 IPR015797 NUDIX hydrolase-like domain superfamily YPC_0080 IPR001460 Penicillin-binding protein, transpeptidase YPC_0080 IPR031376 Penicillin-binding protein, OB-like domain YPC_0080 IPR036950 Penicillin binding protein transglycosylase domain YPC_0080 IPR023346 Lysozyme-like domain superfamily YPC_0080 IPR001264 Glycosyl transferase, family 51 YPC_0080 IPR012338 Beta-lactamase/transpeptidase-like YPC_0086 IPR004846 Type II/III secretion system YPC_0086 IPR004845 Type II secretion system GspD, conserved site YPC_0086 IPR013355 Type IV pilus secretin PilQ YPC_0086 IPR038591 NolW-like superfamily YPC_0086 IPR001775 GspD/PilQ family YPC_0086 IPR005644 NolW-like YPC_0086 IPR011662 Secretin/TonB, short N-terminal domain YPC_0087 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0087 IPR000623 Shikimate kinase/Threonine synthase-like 1 YPC_0087 IPR023000 Shikimate kinase, conserved site YPC_0087 IPR031322 Shikimate kinase/gluconokinase YPC_0088 IPR016037 3-dehydroquinate synthase AroB YPC_0088 IPR030963 3-dehydroquinate synthase family YPC_0088 IPR030960 3-dehydroquinate synthase domain YPC_0089 IPR007730 Sporulation-like domain YPC_0089 IPR036680 Sporulation-like domain superfamily YPC_0090 IPR023095 Adenine-specific methyltransferase, domain 2 YPC_0090 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPC_0090 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_0090 IPR012327 D12 class N6 adenine-specific DNA methyltransferase YPC_0090 IPR012263 Adenine modification methylase, M.EcoRV-type YPC_0091 IPR026019 Ribulose-phosphate 3-epimerase YPC_0091 IPR011060 Ribulose-phosphate binding barrel YPC_0091 IPR013785 Aldolase-type TIM barrel YPC_0091 IPR000056 Ribulose-phosphate 3-epimerase-like YPC_0092 IPR036412 HAD-like superfamily YPC_0092 IPR006439 HAD hydrolase, subfamily IA YPC_0092 IPR041492 Haloacid dehalogenase-like hydrolase YPC_0092 IPR023214 HAD superfamily YPC_0092 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic YPC_0092 IPR037512 Phosphoglycolate phosphatase, prokaryotic YPC_0092 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPC_0093 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPC_0093 IPR002305 Aminoacyl-tRNA synthetase, class Ic YPC_0093 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_0093 IPR002306 Tryptophan-tRNA ligase YPC_0093 IPR024109 Tryptophan-tRNA ligase, bacterial-type YPC_0094 IPR000878 Tetrapyrrole methylase YPC_0094 IPR035996 Tetrapyrrole methylase superfamily YPC_0094 IPR014777 Tetrapyrrole methylase, subdomain 1 YPC_0094 IPR014776 Tetrapyrrole methylase, subdomain 2 YPC_0094 IPR006367 Sirohaem synthase, N-terminal YPC_0094 IPR036291 NAD(P)-binding domain superfamily YPC_0094 IPR037115 Sirohaem synthase, dimerisation domain superfamily YPC_0094 IPR012409 Sirohaem synthase YPC_0094 IPR028281 Siroheme synthase, central domain YPC_0094 IPR006366 Uroporphyrin-III C-methyltransferase YPC_0094 IPR019478 Sirohaem synthase, dimerisation domain YPC_0094 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site YPC_0095 IPR023271 Aquaporin-like YPC_0095 IPR000292 Formate/nitrite transporter YPC_0095 IPR024002 Formate/nitrite transporter, conserved site YPC_0097 IPR012748 Rieske-like [2Fe-2S] domain, NirD-type YPC_0097 IPR017881 Nitrite reductase (NADH) small subunit YPC_0097 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily YPC_0098 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB YPC_0098 IPR007419 BFD-like [2Fe-2S]-binding domain YPC_0098 IPR017121 Nitrite reductase [NAD(P)H], large subunit YPC_0098 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily YPC_0098 IPR023753 FAD/NAD(P)-binding domain YPC_0098 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal YPC_0098 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain YPC_0098 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site YPC_0098 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily YPC_0098 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_0098 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain YPC_0100 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPC_0100 IPR032466 Metal-dependent hydrolase YPC_0100 IPR013108 Amidohydrolase 3 YPC_0101 IPR023528 Major facilitator superfamily transporter, TsgA YPC_0101 IPR036259 MFS transporter superfamily YPC_0101 IPR020846 Major facilitator superfamily domain YPC_0101 IPR011701 Major facilitator superfamily YPC_0103 IPR028082 Periplasmic binding protein-like I YPC_0103 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_0103 IPR000843 LacI-type HTH domain YPC_0104 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal YPC_0104 IPR036291 NAD(P)-binding domain superfamily YPC_0104 IPR019802 Glycoside hydrolase, family 4, conserved site YPC_0104 IPR001088 Glycoside hydrolase, family 4 YPC_0104 IPR022616 Glycosyl hydrolase, family 4, C-terminal YPC_0105 IPR029000 Cyclophilin-like domain superfamily YPC_0105 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain YPC_0105 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site YPC_0106 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0106 IPR033186 Helicase HerA-like C-terminal YPC_0107 IPR029062 Class I glutamine amidotransferase-like YPC_0107 IPR017926 Glutamine amidotransferase YPC_0107 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain YPC_0108 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria YPC_0108 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_0108 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_0108 IPR005814 Aminotransferase class-III YPC_0108 IPR004636 Acetylornithine/Succinylornithine transaminase family YPC_0108 IPR015424 Pyridoxal phosphate-dependent transferase YPC_0110 IPR010020 Integral membrane protein, YccS/YhfK YPC_0110 IPR032692 Integral membrane protein YccS, N-terminal YPC_0111 IPR018490 Cyclic nucleotide-binding-like YPC_0111 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0111 IPR012318 Crp-type HTH domain YPC_0111 IPR036390 Winged helix DNA-binding domain superfamily YPC_0111 IPR000595 Cyclic nucleotide-binding domain YPC_0111 IPR018488 Cyclic nucleotide-binding, conserved site YPC_0111 IPR014710 RmlC-like jelly roll fold YPC_0111 IPR018335 Transcription regulator HTH, Crp-type, conserved site YPC_0112 IPR015946 K homology domain-like, alpha/beta YPC_0112 IPR003718 OsmC/Ohr family YPC_0112 IPR036102 OsmC/Ohr superfamily YPC_0114 IPR006083 Phosphoribulokinase/uridine kinase YPC_0114 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0114 IPR006082 Phosphoribulokinase YPC_0115 IPR036685 YehU-like superfamily YPC_0115 IPR010648 Uncharacterised protein family UPF0270 YPC_0116 IPR000073 Alpha/beta hydrolase fold-1 YPC_0116 IPR000952 AB hydrolase 4, conserved site YPC_0116 IPR012020 AB hydrolase 4 family YPC_0116 IPR029058 Alpha/Beta hydrolase fold YPC_0117 IPR001123 Amino acid exporter protein, LeuE-type YPC_0119 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPC_0119 IPR010068 Taurine ABC transporter, substrate-binding protein TauA YPC_0119 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPC_0120 IPR015859 ABC transporter, taurine import, TauD YPC_0120 IPR003593 AAA+ ATPase domain YPC_0120 IPR003439 ABC transporter-like YPC_0120 IPR017871 ABC transporter, conserved site YPC_0120 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0121 IPR035906 MetI-like superfamily YPC_0121 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_0122 IPR003819 TauD/TfdA-like domain YPC_0122 IPR042098 Taurine dioxygenase TauD-like superfamily YPC_0124 IPR029044 Nucleotide-diphospho-sugar transferases YPC_0124 IPR001173 Glycosyltransferase 2-like YPC_0127 IPR003680 Flavodoxin-like fold YPC_0127 IPR029039 Flavoprotein-like superfamily YPC_0127 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG YPC_0128 IPR020884 Glutathione-regulated potassium-efflux system protein KefB YPC_0128 IPR004771 K+/H+ exchanger YPC_0128 IPR006153 Cation/H+ exchanger YPC_0128 IPR003148 Regulator of K+ conductance, N-terminal YPC_0128 IPR038770 Sodium/solute symporter superfamily YPC_0128 IPR036291 NAD(P)-binding domain superfamily YPC_0129 IPR012658 Conserved hypothetical protein CHP02443 YPC_0130 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPC_0132 IPR007236 SlyX YPC_0133 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YPC_0133 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily YPC_0133 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPC_0134 IPR013559 YheO-like YPC_0134 IPR039446 Transcriptional regulator DauR-like YPC_0134 IPR039445 Transcriptional regulator DauR-like, HTH domain YPC_0135 IPR027396 DsrEFH-like YPC_0135 IPR003787 Sulphur relay, DsrE/F-like protein YPC_0135 IPR017463 Sulphur relay, TusD/DsrE YPC_0136 IPR027396 DsrEFH-like YPC_0136 IPR003787 Sulphur relay, DsrE/F-like protein YPC_0136 IPR037450 Sulphur relay, TusC YPC_0136 IPR017462 Sulphur relay, TusC/DsrF YPC_0137 IPR023526 Sulphur relay, TusB YPC_0137 IPR027396 DsrEFH-like YPC_0137 IPR007215 Sulphur relay, TusB/DsrH YPC_0138 IPR006032 Ribosomal protein S12/S23 YPC_0138 IPR005679 Ribosomal protein S12, bacterial-type YPC_0138 IPR012340 Nucleic acid-binding, OB-fold YPC_0139 IPR036823 Ribosomal protein S7 domain superfamily YPC_0139 IPR023798 Ribosomal protein S7 domain YPC_0139 IPR020606 Ribosomal protein S7, conserved site YPC_0139 IPR000235 Ribosomal protein S5/S7 YPC_0139 IPR005717 Ribosomal protein S7, bacterial/organellar-type YPC_0140 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPC_0140 IPR041095 Elongation Factor G, domain II YPC_0140 IPR009022 Elongation factor G, domain III YPC_0140 IPR035647 EF-G domain III/V-like YPC_0140 IPR035649 EFG, domain V YPC_0140 IPR009000 Translation protein, beta-barrel domain superfamily YPC_0140 IPR004540 Translation elongation factor EFG/EF2 YPC_0140 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_0140 IPR000795 Transcription factor, GTP-binding domain YPC_0140 IPR000640 Elongation factor EFG, domain V-like YPC_0140 IPR004161 Translation elongation factor EFTu-like, domain 2 YPC_0140 IPR031157 Tr-type G domain, conserved site YPC_0140 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0140 IPR005517 Translation elongation factor EFG/EF2, domain IV YPC_0140 IPR005225 Small GTP-binding protein domain YPC_0141 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain YPC_0141 IPR033720 Elongation factor Tu, domain 2 YPC_0141 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YPC_0141 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YPC_0141 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPC_0141 IPR009000 Translation protein, beta-barrel domain superfamily YPC_0141 IPR004161 Translation elongation factor EFTu-like, domain 2 YPC_0141 IPR005225 Small GTP-binding protein domain YPC_0141 IPR000795 Transcription factor, GTP-binding domain YPC_0141 IPR031157 Tr-type G domain, conserved site YPC_0141 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0144 IPR036515 Transposase IS200-like superfamily YPC_0144 IPR002686 Transposase IS200-like YPC_0145 IPR007419 BFD-like [2Fe-2S]-binding domain YPC_0145 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily YPC_0146 IPR002024 Bacterioferritin YPC_0146 IPR012347 Ferritin-like YPC_0146 IPR009040 Ferritin-like diiron domain YPC_0146 IPR009078 Ferritin-like superfamily YPC_0146 IPR008331 Ferritin/DPS protein domain YPC_0147 IPR018268 Ribosomal protein S10, conserved site YPC_0147 IPR027486 Ribosomal protein S10 domain YPC_0147 IPR036838 Ribosomal protein S10 domain superfamily YPC_0147 IPR001848 Ribosomal protein S10 YPC_0148 IPR019927 Ribosomal protein L3, bacterial/organelle-type YPC_0148 IPR009000 Translation protein, beta-barrel domain superfamily YPC_0148 IPR019926 Ribosomal protein L3, conserved site YPC_0148 IPR000597 Ribosomal protein L3 YPC_0149 IPR002136 Ribosomal protein L4/L1e YPC_0149 IPR023574 Ribosomal protein L4 domain superfamily YPC_0149 IPR013005 50S ribosomal protein uL4 YPC_0150 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YPC_0150 IPR012678 Ribosomal protein L23/L15e core domain superfamily YPC_0150 IPR001014 Ribosomal protein L23/L25, conserved site YPC_0150 IPR013025 Ribosomal protein L25/L23 YPC_0151 IPR002171 Ribosomal protein L2 YPC_0151 IPR014726 Ribosomal protein L2, domain 3 YPC_0151 IPR022671 Ribosomal protein L2, conserved site YPC_0151 IPR022669 Ribosomal protein L2, C-terminal YPC_0151 IPR012340 Nucleic acid-binding, OB-fold YPC_0151 IPR022666 Ribosomal Proteins L2, RNA binding domain YPC_0151 IPR014722 Ribosomal protein L2, domain 2 YPC_0151 IPR005880 Ribosomal protein L2, bacterial/organellar-type YPC_0151 IPR008991 Translation protein SH3-like domain superfamily YPC_0152 IPR020934 Ribosomal protein S19 conserved site YPC_0152 IPR005732 Ribosomal protein S19, bacterial-type YPC_0152 IPR002222 Ribosomal protein S19/S15 YPC_0152 IPR023575 Ribosomal protein S19, superfamily YPC_0153 IPR018260 Ribosomal protein L22/L17, conserved site YPC_0153 IPR001063 Ribosomal protein L22/L17 YPC_0153 IPR036394 Ribosomal protein L22/L17 superfamily YPC_0153 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type YPC_0154 IPR004087 K Homology domain YPC_0154 IPR004044 K Homology domain, type 2 YPC_0154 IPR009019 K homology domain superfamily, prokaryotic type YPC_0154 IPR005704 Ribosomal protein S3, bacterial-type YPC_0154 IPR015946 K homology domain-like, alpha/beta YPC_0154 IPR036419 Ribosomal protein S3, C-terminal domain superfamily YPC_0154 IPR018280 Ribosomal protein S3, conserved site YPC_0154 IPR001351 Ribosomal protein S3, C-terminal YPC_0155 IPR020798 Ribosomal protein L16, conserved site YPC_0155 IPR000114 Ribosomal protein L16 YPC_0155 IPR036920 Ribosomal protein L10e/L16 superfamily YPC_0155 IPR016180 Ribosomal protein L10e/L16 YPC_0156 IPR001854 Ribosomal protein L29/L35 YPC_0156 IPR036049 Ribosomal protein L29/L35 superfamily YPC_0156 IPR018254 Ribosomal protein L29, conserved site YPC_0157 IPR012340 Nucleic acid-binding, OB-fold YPC_0157 IPR019984 30S ribosomal protein S17 YPC_0157 IPR000266 Ribosomal protein S17/S11 YPC_0157 IPR019979 Ribosomal protein S17, conserved site YPC_0158 IPR019972 Ribosomal protein L14P, conserved site YPC_0158 IPR005745 Ribosomal protein L14P, bacterial-type YPC_0158 IPR036853 Ribosomal protein L14 superfamily YPC_0158 IPR000218 Ribosomal protein L14P YPC_0159 IPR041988 Ribosomal Protein L26/L24, KOW domain YPC_0159 IPR005825 Ribosomal protein L24/L26, conserved site YPC_0159 IPR003256 Ribosomal protein L24 YPC_0159 IPR008991 Translation protein SH3-like domain superfamily YPC_0159 IPR005824 KOW YPC_0159 IPR014722 Ribosomal protein L2, domain 2 YPC_0160 IPR002132 Ribosomal protein L5 YPC_0160 IPR031310 Ribosomal protein L5, N-terminal YPC_0160 IPR022803 Ribosomal protein L5 domain superfamily YPC_0160 IPR031309 Ribosomal protein L5, C-terminal YPC_0160 IPR020930 Ribosomal protein L5, bacterial-type YPC_0161 IPR001209 Ribosomal protein S14 YPC_0161 IPR023036 Ribosomal protein S14, bacterial/plastid YPC_0161 IPR018271 Ribosomal protein S14, conserved site YPC_0162 IPR035987 Ribosomal protein S8 superfamily YPC_0162 IPR000630 Ribosomal protein S8 YPC_0163 IPR002358 Ribosomal protein L6, conserved site YPC_0163 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily YPC_0163 IPR019906 Ribosomal protein L6, bacterial-type YPC_0163 IPR020040 Ribosomal protein L6, alpha-beta domain YPC_0163 IPR000702 Ribosomal protein L6 YPC_0164 IPR005484 Ribosomal protein L18 YPC_0164 IPR004389 Ribosomal protein L18, bacterial-type YPC_0165 IPR013810 Ribosomal protein S5, N-terminal YPC_0165 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPC_0165 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_0165 IPR000851 Ribosomal protein S5 YPC_0165 IPR005324 Ribosomal protein S5, C-terminal YPC_0165 IPR005712 Ribosomal protein S5, bacterial-type YPC_0165 IPR018192 Ribosomal protein S5, N-terminal, conserved site YPC_0166 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain YPC_0166 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily YPC_0166 IPR005996 Ribosomal protein L30, bacterial-type YPC_0166 IPR018038 Ribosomal protein L30, conserved site YPC_0167 IPR001196 Ribosomal protein L15, conserved site YPC_0167 IPR005749 Ribosomal protein L15, bacterial-type YPC_0167 IPR030878 Ribosomal protein L15 YPC_0167 IPR036227 Ribosomal L18e/L15P superfamily YPC_0167 IPR021131 Ribosomal protein L18e/L15P YPC_0168 IPR030659 SecY conserved site YPC_0168 IPR026593 Protein translocase subunit SecY YPC_0168 IPR002208 SecY/SEC61-alpha family YPC_0168 IPR023201 SecY domain superfamily YPC_0169 IPR000473 Ribosomal protein L36 YPC_0169 IPR035977 Ribosomal protein L36 superfamily YPC_0170 IPR018269 Ribosomal protein S13, conserved site YPC_0170 IPR019980 Ribosomal protein S13, bacterial-type YPC_0170 IPR010979 Ribosomal protein S13-like, H2TH YPC_0170 IPR027437 30s ribosomal protein S13, C-terminal YPC_0170 IPR001892 Ribosomal protein S13 YPC_0171 IPR018102 Ribosomal S11, conserved site YPC_0171 IPR036967 Ribosomal protein S11 superfamily YPC_0171 IPR001971 Ribosomal protein S11 YPC_0171 IPR019981 Ribosomal protein S11, bacterial-type YPC_0172 IPR022801 Ribosomal protein S4/S9 YPC_0172 IPR001912 Ribosomal protein S4/S9, N-terminal YPC_0172 IPR002942 RNA-binding S4 domain YPC_0172 IPR018079 Ribosomal protein S4, conserved site YPC_0172 IPR036986 RNA-binding S4 domain superfamily YPC_0172 IPR005709 Ribosomal protein S4, bacterial-type YPC_0173 IPR011262 DNA-directed RNA polymerase, insert domain YPC_0173 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type YPC_0173 IPR011773 DNA-directed RNA polymerase, alpha subunit YPC_0173 IPR036603 RNA polymerase, RBP11-like subunit YPC_0173 IPR011260 RNA polymerase, alpha subunit, C-terminal YPC_0173 IPR036643 DNA-directed RNA polymerase, insert domain superfamily YPC_0174 IPR036373 Ribosomal protein L17 superfamily YPC_0174 IPR000456 Ribosomal protein L17 YPC_0175 IPR011788 Zn(II)-responsive transcriptional regulator YPC_0175 IPR000551 MerR-type HTH domain YPC_0175 IPR009061 Putative DNA-binding domain superfamily YPC_0176 IPR005589 Alternative ribosome-rescue factor A YPC_0177 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L YPC_0177 IPR001185 Large-conductance mechanosensitive channel YPC_0177 IPR019823 Large-conductance mechanosensitive channel, conserved site YPC_0177 IPR036019 Gated mechanosensitive channel YPC_0178 IPR003148 Regulator of K+ conductance, N-terminal YPC_0178 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YPC_0178 IPR006037 Regulator of K+ conductance, C-terminal YPC_0178 IPR036291 NAD(P)-binding domain superfamily YPC_0178 IPR006036 Potassium uptake protein TrkA YPC_0179 IPR006027 NusB/RsmB/TIM44 YPC_0179 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_0179 IPR023267 RNA (C5-cytosine) methyltransferase YPC_0179 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site YPC_0179 IPR004573 rRNA small subunit methyltransferase B YPC_0179 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type YPC_0179 IPR035926 NusB-like superfamily YPC_0179 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae YPC_0180 IPR005793 Formyl transferase, C-terminal YPC_0180 IPR002376 Formyl transferase, N-terminal YPC_0180 IPR036477 Formyl transferase, N-terminal domain superfamily YPC_0180 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain YPC_0180 IPR001555 Phosphoribosylglycinamide formyltransferase, active site YPC_0180 IPR011034 Formyl transferase-like, C-terminal domain superfamily YPC_0180 IPR037022 Formyl transferase, C-terminal domain superfamily YPC_0180 IPR005794 Methionyl-tRNA formyltransferase YPC_0181 IPR023635 Peptide deformylase YPC_0181 IPR036821 Peptide deformylase superfamily YPC_0182 IPR003488 DNA recombination-mediator protein A YPC_0182 IPR041614 DprA, winged helix domain YPC_0182 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0183 IPR007456 Smg YPC_0184 IPR013498 DNA topoisomerase, type IA, zn finger YPC_0184 IPR000380 DNA topoisomerase, type IA YPC_0185 IPR006070 YrdC-like domain YPC_0185 IPR023535 Threonylcarbamoyl-AMP synthase YPC_0185 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YPC_0186 IPR022893 Shikimate dehydrogenase family YPC_0186 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal YPC_0186 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YPC_0186 IPR036291 NAD(P)-binding domain superfamily YPC_0186 IPR041121 SDH, C-terminal YPC_0186 IPR011342 Shikimate dehydrogenase YPC_0187 IPR011004 Trimeric LpxA-like superfamily YPC_0187 IPR001451 Hexapeptide repeat YPC_0188 IPR003593 AAA+ ATPase domain YPC_0188 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0188 IPR001270 ClpA/B family YPC_0188 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_0188 IPR002611 IstB-like ATP-binding protein YPC_0189 IPR017894 HTH domain, IS21 transposase-type YPC_0189 IPR036397 Ribonuclease H superfamily YPC_0189 IPR006120 Resolvase, HTH domain YPC_0189 IPR001584 Integrase, catalytic core YPC_0189 IPR012337 Ribonuclease H-like superfamily YPC_0190 IPR000182 GNAT domain YPC_0190 IPR012660 Thioesterase, putative YPC_0190 IPR016181 Acyl-CoA N-acyltransferase YPC_0190 IPR029069 HotDog domain superfamily YPC_0191 IPR007844 AsmA YPC_0193 IPR006042 Xanthine/uracil permease YPC_0193 IPR006043 Xanthine/uracil/vitamin C permease YPC_0194 IPR004445 Sodium/glutamate symport carrier protein GltS YPC_0196 IPR012340 Nucleic acid-binding, OB-fold YPC_0196 IPR001650 Helicase, C-terminal YPC_0196 IPR004609 ATP-dependent DNA helicase RecG YPC_0196 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_0196 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0196 IPR033454 RecG, wedge domain YPC_0196 IPR011545 DEAD/DEAH box helicase domain YPC_0197 IPR029028 Alpha/beta knot methyltransferases YPC_0197 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase YPC_0197 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPC_0197 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal YPC_0197 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPC_0198 IPR012675 Beta-grasp domain superfamily YPC_0198 IPR003607 HD/PDEase domain YPC_0198 IPR004811 RelA/SpoT family YPC_0198 IPR007685 RelA/SpoT YPC_0198 IPR004095 TGS YPC_0198 IPR002912 ACT domain YPC_0198 IPR012676 TGS-like YPC_0198 IPR033655 RelA, TGS domain YPC_0199 IPR003716 DNA-directed RNA polymerase, omega subunit YPC_0199 IPR006110 RNA polymerase, subunit omega/K/RPB6 YPC_0199 IPR012293 RNA polymerase subunit, RPB6/omega YPC_0199 IPR036161 RPB6/omega subunit-like superfamily YPC_0200 IPR017665 Guanylate kinase YPC_0200 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0200 IPR020590 Guanylate kinase, conserved site YPC_0200 IPR008144 Guanylate kinase-like domain YPC_0200 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YPC_0201 IPR013840 NAD-dependent DNA ligase, N-terminal YPC_0201 IPR004150 NAD-dependent DNA ligase, OB-fold YPC_0201 IPR020923 DNA ligase B YPC_0201 IPR013839 NAD-dependent DNA ligase, adenylation YPC_0201 IPR010994 RuvA domain 2-like YPC_0201 IPR012340 Nucleic acid-binding, OB-fold YPC_0202 IPR005115 Uncharacterised domain UPF0126 YPC_0203 IPR013527 YicC-like, N-terminal YPC_0203 IPR013551 Domain of unknown function DUF1732 YPC_0203 IPR005229 Conserved hypothetical protein CHP00255 YPC_0204 IPR036345 Exoribonuclease, PH domain 2 superfamily YPC_0204 IPR018336 Ribonuclease PH, conserved site YPC_0204 IPR001247 Exoribonuclease, phosphorolytic domain 1 YPC_0204 IPR027408 PNPase/RNase PH domain superfamily YPC_0204 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_0204 IPR015847 Exoribonuclease, phosphorolytic domain 2 YPC_0204 IPR002381 Ribonuclease PH, bacterial-type YPC_0205 IPR023031 Orotate phosphoribosyltransferase YPC_0205 IPR029057 Phosphoribosyltransferase-like YPC_0205 IPR000836 Phosphoribosyltransferase domain YPC_0205 IPR004467 Orotate phosphoribosyl transferase domain YPC_0206 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPC_0206 IPR001647 DNA-binding HTH domain, TetR-type YPC_0206 IPR009057 Homeobox-like domain superfamily YPC_0206 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPC_0206 IPR023769 Nucleoid occlusion factor SlmA YPC_0207 IPR033704 dUTPase, trimeric YPC_0207 IPR036157 dUTPase-like superfamily YPC_0207 IPR029054 dUTPase-like YPC_0207 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase YPC_0208 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal YPC_0208 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC YPC_0208 IPR035929 CoaB-like superfamily YPC_0208 IPR003382 Flavoprotein YPC_0208 IPR036551 Flavin prenyltransferase-like YPC_0209 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily YPC_0209 IPR025657 RadC-like JAB domain YPC_0209 IPR037518 MPN domain YPC_0209 IPR010994 RuvA domain 2-like YPC_0209 IPR001405 Uncharacterised protein family UPF0758 YPC_0209 IPR020891 Uncharacterised protein family UPF0758, conserved site YPC_0210 IPR026569 Ribosomal protein L28/L24 YPC_0210 IPR037147 Ribosomal protein L28/L24 superfamily YPC_0210 IPR034704 L28p-like YPC_0210 IPR001383 Ribosomal protein L28 YPC_0211 IPR038584 Ribosomal protein L33 superfamily YPC_0211 IPR001705 Ribosomal protein L33 YPC_0211 IPR018264 Ribosomal protein L33, conserved site YPC_0211 IPR011332 Zinc-binding ribosomal protein YPC_0212 IPR010663 Zinc finger, FPG/IleRS-type YPC_0212 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type YPC_0212 IPR035937 MutM-like, N-terminal YPC_0212 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain YPC_0212 IPR020629 Formamidopyrimidine-DNA glycosylase YPC_0212 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site YPC_0212 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding YPC_0212 IPR010979 Ribosomal protein S13-like, H2TH YPC_0213 IPR004821 Cytidyltransferase-like domain YPC_0213 IPR001980 Phosphopantetheine adenylyltransferase YPC_0213 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_0214 IPR029044 Nucleotide-diphospho-sugar transferases YPC_0214 IPR001173 Glycosyltransferase 2-like YPC_0215 IPR039901 3-deoxy-D-manno-octulosonic acid transferase YPC_0215 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal YPC_0215 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily YPC_0216 IPR011908 Lipopolysaccharide heptosyltransferase I YPC_0216 IPR002201 Glycosyl transferase, family 9 YPC_0217 IPR011910 ADP-heptose--LPS heptosyltransferase 2 YPC_0217 IPR002201 Glycosyl transferase, family 9 YPC_0218 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase YPC_0218 IPR036291 NAD(P)-binding domain superfamily YPC_0218 IPR001509 NAD-dependent epimerase/dehydratase YPC_0219 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_0219 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_0219 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase YPC_0219 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPC_0219 IPR004839 Aminotransferase, class I/classII YPC_0219 IPR015424 Pyridoxal phosphate-dependent transferase YPC_0220 IPR020843 Polyketide synthase, enoylreductase domain YPC_0220 IPR036291 NAD(P)-binding domain superfamily YPC_0220 IPR004627 L-threonine 3-dehydrogenase YPC_0220 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site YPC_0220 IPR013149 Alcohol dehydrogenase, C-terminal YPC_0220 IPR011032 GroES-like superfamily YPC_0220 IPR013154 Alcohol dehydrogenase, N-terminal YPC_0223 IPR011055 Duplicated hybrid motif YPC_0223 IPR016047 Peptidase M23 YPC_0224 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent YPC_0224 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily YPC_0224 IPR006124 Metalloenzyme YPC_0224 IPR011258 BPG-independent PGAM, N-terminal YPC_0224 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPC_0225 IPR001763 Rhodanese-like domain YPC_0225 IPR036873 Rhodanese-like domain superfamily YPC_0226 IPR011900 Glutaredoxin, GrxC YPC_0226 IPR014025 Glutaredoxin subgroup YPC_0226 IPR011767 Glutaredoxin active site YPC_0226 IPR036249 Thioredoxin-like superfamily YPC_0226 IPR002109 Glutaredoxin YPC_0227 IPR035958 SecB-like superfamily YPC_0227 IPR003708 Bacterial protein export chaperone SecB YPC_0228 IPR036291 NAD(P)-binding domain superfamily YPC_0228 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal YPC_0228 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal YPC_0228 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent YPC_0228 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPC_0228 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPC_0230 IPR001451 Hexapeptide repeat YPC_0230 IPR010493 Serine acetyltransferase, N-terminal YPC_0230 IPR042122 Serine acetyltransferase, N-terminal domain superfamily YPC_0230 IPR011004 Trimeric LpxA-like superfamily YPC_0230 IPR018357 Hexapeptide transferase, conserved site YPC_0230 IPR005881 Serine O-acetyltransferase YPC_0231 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPC_0231 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase YPC_0231 IPR029028 Alpha/beta knot methyltransferases YPC_0231 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPC_0232 IPR009057 Homeobox-like domain superfamily YPC_0232 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0232 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site YPC_0232 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily YPC_0232 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain YPC_0232 IPR016221 Bifunctional regulatory protein Ada YPC_0232 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain YPC_0232 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPC_0232 IPR004026 Ada DNA repair, metal-binding YPC_0232 IPR018060 DNA binding HTH domain, AraC-type YPC_0232 IPR035451 Ada-like domain superfamily YPC_0232 IPR018062 HTH domain AraC-type, conserved site YPC_0233 IPR003660 HAMP domain YPC_0233 IPR003594 Histidine kinase/HSP90-like ATPase YPC_0233 IPR038515 CpxA, periplasmic domain superfamily YPC_0233 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_0233 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_0233 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_0233 IPR032404 Two-component sensor protein CpxA, periplasmic domain YPC_0233 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_0233 IPR005467 Histidine kinase domain YPC_0234 IPR001789 Signal transduction response regulator, receiver domain YPC_0234 IPR039420 Transcriptional regulatory protein WalR-like YPC_0234 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0234 IPR011006 CheY-like superfamily YPC_0234 IPR001867 OmpR/PhoB-type DNA-binding domain YPC_0235 IPR012899 LTXXQ motif family protein YPC_0237 IPR010106 Recombination-promoting nuclease RpnA YPC_0237 IPR006842 Transposase (putative), YhgA-like YPC_0239 IPR027470 Cation efflux protein, cytoplasmic domain YPC_0239 IPR023783 Cation efflux pump FieF YPC_0239 IPR027469 Cation efflux transmembrane domain superfamily YPC_0239 IPR002524 Cation efflux protein YPC_0239 IPR036837 Cation efflux protein, cytoplasmic domain superfamily YPC_0240 IPR035966 Phosphofructokinase superfamily YPC_0240 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type YPC_0240 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic YPC_0240 IPR015912 Phosphofructokinase, conserved site YPC_0240 IPR000023 Phosphofructokinase domain YPC_0240 IPR022953 ATP-dependent 6-phosphofructokinase YPC_0241 IPR000957 Sulphate/thiosulphate-binding, conserved site YPC_0241 IPR034408 Sulphate/thiosulphate-binding site YPC_0241 IPR005669 Thiosulphate/Sulfate-binding protein YPC_0243 IPR001898 Solute carrier family 13 YPC_0243 IPR030676 Citrate carrier CitT-related YPC_0244 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily YPC_0244 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein YPC_0244 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase YPC_0245 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related YPC_0245 IPR024078 Putative deacetylase LmbE-like domain superfamily YPC_0246 IPR005119 LysR, substrate-binding YPC_0246 IPR000847 Transcription regulator HTH, LysR YPC_0246 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0246 IPR036390 Winged helix DNA-binding domain superfamily YPC_0247 IPR000652 Triosephosphate isomerase YPC_0247 IPR035990 Triosephosphate isomerase superfamily YPC_0247 IPR013785 Aldolase-type TIM barrel YPC_0247 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic YPC_0247 IPR020861 Triosephosphate isomerase, active site YPC_0248 IPR009918 Protein of unknown function DUF1454 YPC_0249 IPR008523 Protein of unknown function DUF805 YPC_0250 IPR017938 Riboflavin synthase-like beta-barrel YPC_0250 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPC_0250 IPR017927 FAD-binding domain, ferredoxin reductase-type YPC_0250 IPR033892 Ferredoxin--NADP reductase, bacteria YPC_0250 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPC_0250 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPC_0251 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase YPC_0252 IPR018483 Carbohydrate kinase, FGGY, conserved site YPC_0252 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPC_0252 IPR000577 Carbohydrate kinase, FGGY YPC_0252 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPC_0252 IPR005999 Glycerol kinase YPC_0256 IPR009252 Cell division protein ZapB YPC_0260 IPR017871 ABC transporter, conserved site YPC_0260 IPR003439 ABC transporter-like YPC_0260 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPC_0260 IPR011527 ABC transporter type 1, transmembrane domain YPC_0260 IPR033838 Colicin V processing peptidase YPC_0260 IPR039421 Type I protein exporter YPC_0260 IPR005074 Peptidase C39, bacteriocin processing YPC_0260 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0260 IPR003593 AAA+ ATPase domain YPC_0261 IPR006144 Secretion protein HlyD, conserved site YPC_0261 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPC_0267 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria YPC_0267 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein YPC_0267 IPR010203 Regulator of ribonuclease activity A YPC_0267 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily YPC_0268 IPR026046 UbiA prenyltransferase domain containing protein 1 YPC_0268 IPR000537 UbiA prenyltransferase family YPC_0268 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase YPC_0269 IPR019489 Clp ATPase, C-terminal YPC_0269 IPR004491 Heat shock protein HslU YPC_0269 IPR003593 AAA+ ATPase domain YPC_0269 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0269 IPR003959 ATPase, AAA-type, core YPC_0270 IPR001353 Proteasome, subunit alpha/beta YPC_0270 IPR022281 ATP-dependent protease, HslV subunit YPC_0270 IPR023333 Proteasome B-type subunit YPC_0270 IPR029055 Nucleophile aminohydrolases, N-terminal YPC_0271 IPR007730 Sporulation-like domain YPC_0271 IPR011930 Cell division protein FtsN YPC_0271 IPR036680 Sporulation-like domain superfamily YPC_0272 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_0272 IPR028082 Periplasmic binding protein-like I YPC_0272 IPR000843 LacI-type HTH domain YPC_0273 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily YPC_0273 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain YPC_0273 IPR011545 DEAD/DEAH box helicase domain YPC_0273 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_0273 IPR001650 Helicase, C-terminal YPC_0273 IPR041222 Primosomal protein N', 3' DNA-binding domain YPC_0273 IPR041236 Primosomal protein N, C-terminal domain YPC_0273 IPR005259 Primosomal protein N' YPC_0273 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0275 IPR002150 Ribosomal protein L31 YPC_0275 IPR027491 Ribosomal protein L31 type A YPC_0275 IPR042105 Ribosomal protein L31 superfamily YPC_0275 IPR034704 L28p-like YPC_0276 IPR038972 Inner membrane protein YiaA-like YPC_0276 IPR008024 YiaAB two helix YPC_0279 IPR002084 Methionine repressor MetJ YPC_0279 IPR010985 Ribbon-helix-helix YPC_0279 IPR023453 Methionine repressor MetJ domain superfamily YPC_0280 IPR015424 Pyridoxal phosphate-dependent transferase YPC_0280 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPC_0280 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_0280 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_0280 IPR011821 O-succinylhomoserine (thiol)-lyase YPC_0281 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPC_0281 IPR011821 O-succinylhomoserine (thiol)-lyase YPC_0281 IPR015424 Pyridoxal phosphate-dependent transferase YPC_0281 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_0281 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_0282 IPR001341 Aspartate kinase YPC_0282 IPR001342 Homoserine dehydrogenase, catalytic YPC_0282 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I YPC_0282 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding YPC_0282 IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain YPC_0282 IPR001048 Aspartate/glutamate/uridylate kinase YPC_0282 IPR018042 Aspartate kinase, conserved site YPC_0282 IPR036291 NAD(P)-binding domain superfamily YPC_0282 IPR019811 Homoserine dehydrogenase, conserved site YPC_0282 IPR036393 Acetylglutamate kinase-like superfamily YPC_0283 IPR029041 FAD-linked oxidoreductase-like YPC_0283 IPR003171 Methylenetetrahydrofolate reductase YPC_0283 IPR004620 5,10-methylenetetrahydrofolate reductase YPC_0284 IPR025948 HTH-like domain YPC_0284 IPR038965 Transposase InsF-like YPC_0284 IPR036397 Ribonuclease H superfamily YPC_0284 IPR001584 Integrase, catalytic core YPC_0284 IPR012337 Ribonuclease H-like superfamily YPC_0287 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type YPC_0287 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site YPC_0287 IPR021135 Phosphoenolpyruvate carboxylase YPC_0287 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPC_0287 IPR033129 Phosphoenolpyruvate carboxylase, His active site YPC_0288 IPR002933 Peptidase M20 YPC_0288 IPR010169 Acetylornithine deacetylase ArgE YPC_0288 IPR036264 Bacterial exopeptidase dimerisation domain YPC_0288 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPC_0288 IPR011650 Peptidase M20, dimerisation domain YPC_0289 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPC_0289 IPR036291 NAD(P)-binding domain superfamily YPC_0289 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 YPC_0289 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site YPC_0289 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPC_0290 IPR037528 Acetylglutamate kinase ArgB YPC_0290 IPR004662 Acetylglutamate kinase family YPC_0290 IPR041731 N-Acetyl-L-glutamate kinase, noncyclic YPC_0290 IPR001048 Aspartate/glutamate/uridylate kinase YPC_0290 IPR036393 Acetylglutamate kinase-like superfamily YPC_0291 IPR022761 Fumarate lyase, N-terminal YPC_0291 IPR008948 L-Aspartase-like YPC_0291 IPR000362 Fumarate lyase family YPC_0291 IPR020557 Fumarate lyase, conserved site YPC_0291 IPR024083 Fumarase/histidase, N-terminal YPC_0291 IPR029419 Argininosuccinate lyase, C-terminal YPC_0291 IPR009049 Argininosuccinate lyase YPC_0295 IPR010128 ATPase, type I secretion system, PrtD YPC_0295 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0295 IPR003593 AAA+ ATPase domain YPC_0295 IPR011527 ABC transporter type 1, transmembrane domain YPC_0295 IPR017871 ABC transporter, conserved site YPC_0295 IPR003439 ABC transporter-like YPC_0295 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPC_0296 IPR010129 Type I secretion membrane fusion protein, HlyD family YPC_0296 IPR006144 Secretion protein HlyD, conserved site YPC_0297 IPR006260 TonB/TolA, C-terminal YPC_0297 IPR037682 TonB, C-terminal YPC_0298 IPR006258 Dihydrolipoamide dehydrogenase YPC_0298 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPC_0298 IPR023753 FAD/NAD(P)-binding domain YPC_0298 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_0298 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPC_0298 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YPC_0298 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YPC_0299 IPR036249 Thioredoxin-like superfamily YPC_0299 IPR013740 Redoxin YPC_0299 IPR037944 Peroxiredoxin-5-like YPC_0299 IPR014025 Glutaredoxin subgroup YPC_0299 IPR011906 Glutaredoxin domain YPC_0299 IPR002109 Glutaredoxin YPC_0299 IPR011767 Glutaredoxin active site YPC_0300 IPR036390 Winged helix DNA-binding domain superfamily YPC_0300 IPR005119 LysR, substrate-binding YPC_0300 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0300 IPR000847 Transcription regulator HTH, LysR YPC_0301 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPC_0301 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_0301 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YPC_0301 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPC_0301 IPR023753 FAD/NAD(P)-binding domain YPC_0301 IPR022962 Soluble pyridine nucleotide transhydrogenase YPC_0302 IPR001647 DNA-binding HTH domain, TetR-type YPC_0302 IPR023764 Transcriptional repressor HTH, FabR YPC_0302 IPR009057 Homeobox-like domain superfamily YPC_0303 IPR009867 Protein of unknown function DUF1422 YPC_0304 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA YPC_0304 IPR030390 RNA methyltransferase TrmA, active site YPC_0304 IPR030391 RNA methyltransferase TrmA, conserved site YPC_0304 IPR010280 (Uracil-5)-methyltransferase family YPC_0304 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_0305 IPR039426 Vitamin B12 transporter BtuB-like YPC_0305 IPR010101 TonB-dependent vitamin B12 transporter BtuB YPC_0305 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPC_0305 IPR012910 TonB-dependent receptor, plug domain YPC_0305 IPR010917 TonB-dependent receptor, conserved site YPC_0305 IPR037066 TonB-dependent receptor, plug domain superfamily YPC_0305 IPR000531 TonB-dependent receptor-like, beta-barrel YPC_0306 IPR015942 Asp/Glu/hydantoin racemase YPC_0306 IPR001920 Asp/Glu racemase YPC_0306 IPR004391 Glutamate racemase YPC_0306 IPR033134 Asp/Glu racemase, active site 2 YPC_0306 IPR018187 Asp/Glu racemase, active site 1 YPC_0315 IPR025997 Periplasmic binding protein YPC_0315 IPR028082 Periplasmic binding protein-like I YPC_0315 IPR033893 ABC transporter periplasmic-binding protein YtfQ YPC_0316 IPR017871 ABC transporter, conserved site YPC_0316 IPR003439 ABC transporter-like YPC_0316 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0316 IPR003593 AAA+ ATPase domain YPC_0319 IPR020890 Transcription regulator HTH, HdfR YPC_0319 IPR000847 Transcription regulator HTH, LysR YPC_0319 IPR005119 LysR, substrate-binding YPC_0319 IPR036390 Winged helix DNA-binding domain superfamily YPC_0319 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0320 IPR007335 Protein of unknown function DUF413 YPC_0321 IPR025158 Mg chelatase-related protein, C-terminal domain YPC_0321 IPR004482 Mg chelatase-related protein YPC_0321 IPR000523 Magnesium chelatase ChlI domain YPC_0321 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0321 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPC_0321 IPR003593 AAA+ ATPase domain YPC_0321 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_0322 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPC_0322 IPR029061 Thiamin diphosphate-binding fold YPC_0322 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPC_0322 IPR000399 TPP-binding enzyme, conserved site YPC_0322 IPR039368 Acetolactate synthase large subunit, TPP binding domain YPC_0322 IPR012000 Thiamine pyrophosphate enzyme, central domain YPC_0322 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPC_0322 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPC_0323 IPR002912 ACT domain YPC_0324 IPR001544 Aminotransferase class IV YPC_0324 IPR018300 Aminotransferase, class IV, conserved site YPC_0324 IPR033939 Branched-chain aminotransferase YPC_0324 IPR036038 Aminotransferase-like, PLP-dependent enzymes YPC_0324 IPR005785 Branched-chain amino acid aminotransferase I YPC_0325 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site YPC_0325 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase YPC_0325 IPR004404 Dihydroxy-acid dehydratase YPC_0325 IPR037237 IlvD/EDD, N-terminal domain YPC_0325 IPR042096 Dihydroxy-acid dehydratase, C-terminal YPC_0326 IPR001926 Pyridoxal-phosphate dependent enzyme YPC_0326 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPC_0326 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPC_0326 IPR001721 Threonine dehydratase, ACT-like domain YPC_0326 IPR038110 Threonine dehydratase, ACT-like domain superfamily YPC_0326 IPR005787 Threonine dehydratase, biosynthetic YPC_0332 IPR036390 Winged helix DNA-binding domain superfamily YPC_0332 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0332 IPR000847 Transcription regulator HTH, LysR YPC_0332 IPR005119 LysR, substrate-binding YPC_0332 IPR037404 HTH-type transcriptional activator IlvY, PBP2 domain YPC_0333 IPR013116 Ketol-acid reductoisomerase, N-terminal YPC_0333 IPR000506 Ketol-acid reductoisomerase, C-terminal YPC_0333 IPR036291 NAD(P)-binding domain superfamily YPC_0333 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPC_0333 IPR013023 Ketol-acid reductoisomerase YPC_0333 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPC_0337 IPR003615 HNH nuclease YPC_0337 IPR037146 Colicin/pyocin, DNase domain superfamily YPC_0338 IPR000290 Colicin immunity protein/pyocin immunity protein YPC_0338 IPR035900 Colicin E immunity protein superfamily YPC_0340 IPR001829 Pili assembly chaperone, bacterial YPC_0340 IPR016147 Pili assembly chaperone, N-terminal YPC_0340 IPR008962 PapD-like superfamily YPC_0340 IPR018046 Pili assembly chaperone, conserved site YPC_0340 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPC_0340 IPR013783 Immunoglobulin-like fold YPC_0340 IPR016148 Pili assembly chaperone, C-terminal YPC_0342 IPR000015 Outer membrane usher protein YPC_0342 IPR042186 Outer membrane usher protein FimD, plug domain YPC_0342 IPR025949 PapC-like, C-terminal domain YPC_0342 IPR025885 PapC, N-terminal domain YPC_0342 IPR037224 PapC, N-terminal domain superfamily YPC_0342 IPR018030 Fimbrial membrane usher, conserved site YPC_0343 IPR013783 Immunoglobulin-like fold YPC_0343 IPR016148 Pili assembly chaperone, C-terminal YPC_0343 IPR018046 Pili assembly chaperone, conserved site YPC_0343 IPR001829 Pili assembly chaperone, bacterial YPC_0343 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPC_0343 IPR016147 Pili assembly chaperone, N-terminal YPC_0343 IPR008962 PapD-like superfamily YPC_0345 IPR001207 Transposase, mutator type YPC_0347 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site YPC_0347 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YPC_0349 IPR014016 UvrD-like helicase, ATP-binding domain YPC_0349 IPR005752 ATP-dependent DNA helicase Rep YPC_0349 IPR000212 DNA helicase, UvrD/REP type YPC_0349 IPR014017 UvrD-like DNA helicase, C-terminal YPC_0349 IPR034739 UvrD/AddA helicase, N-terminal YPC_0349 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0349 IPR013986 DExx box DNA helicase domain superfamily YPC_0353 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPC_0353 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_0353 IPR014014 RNA helicase, DEAD-box type, Q motif YPC_0353 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0353 IPR023554 ATP-dependent RNA helicase RhlB type YPC_0353 IPR001650 Helicase, C-terminal YPC_0353 IPR011545 DEAD/DEAH box helicase domain YPC_0354 IPR005746 Thioredoxin YPC_0354 IPR017937 Thioredoxin, conserved site YPC_0354 IPR013766 Thioredoxin domain YPC_0354 IPR036249 Thioredoxin-like superfamily YPC_0355 IPR011112 Rho termination factor, N-terminal YPC_0355 IPR004665 Transcription termination factor Rho YPC_0355 IPR041703 Transcription termination factor Rho, ATP binding domain YPC_0355 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0355 IPR012340 Nucleic acid-binding, OB-fold YPC_0355 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPC_0355 IPR003593 AAA+ ATPase domain YPC_0355 IPR011113 Rho termination factor, RNA-binding domain YPC_0355 IPR036269 Rho termination factor, N-terminal domain superfamily YPC_0355 IPR011129 Cold shock domain YPC_0356 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YPC_0356 IPR000715 Glycosyl transferase, family 4 YPC_0357 IPR032895 ECA polysaccharide chain length modulation protein WzzE YPC_0357 IPR003856 Polysaccharide chain length determinant N-terminal domain YPC_0358 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like YPC_0358 IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB YPC_0358 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain YPC_0359 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal YPC_0359 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation YPC_0359 IPR032891 UDP-N-acetyl-D-mannosamine dehydrogenase WecC YPC_0359 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPC_0359 IPR036291 NAD(P)-binding domain superfamily YPC_0359 IPR017476 UDP-glucose/GDP-mannose dehydrogenase YPC_0359 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase YPC_0359 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily YPC_0359 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal YPC_0360 IPR016040 NAD(P)-binding domain YPC_0360 IPR005888 dTDP-glucose 4,6-dehydratase YPC_0360 IPR036291 NAD(P)-binding domain superfamily YPC_0361 IPR029044 Nucleotide-diphospho-sugar transferases YPC_0361 IPR005835 Nucleotidyl transferase domain YPC_0361 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form YPC_0362 IPR002110 Ankyrin repeat YPC_0362 IPR020683 Ankyrin repeat-containing domain YPC_0362 IPR016181 Acyl-CoA N-acyltransferase YPC_0362 IPR012752 dTDP-fucosamine acetyltransferase WecD YPC_0362 IPR000182 GNAT domain YPC_0363 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_0363 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like YPC_0363 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE YPC_0363 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPC_0363 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_0363 IPR015424 Pyridoxal phosphate-dependent transferase YPC_0364 IPR002797 Polysaccharide biosynthesis protein YPC_0364 IPR032896 Lipid III flippase WzxE YPC_0365 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase YPC_0366 IPR010691 Probable ECA polymerase WzyE YPC_0367 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase YPC_0367 IPR004629 Glycosyl transferase WecB/TagA/CpsF YPC_0368 IPR004840 Amino acid permease, conserved site YPC_0368 IPR004841 Amino acid permease/ SLC12A domain YPC_0376 IPR005254 Heme biosynthesis-associated TPR protein YPC_0376 IPR010817 HemY, N-terminal YPC_0376 IPR013026 Tetratricopeptide repeat-containing domain YPC_0376 IPR011990 Tetratricopeptide-like helical domain superfamily YPC_0376 IPR013105 Tetratricopeptide repeat 2 YPC_0376 IPR019734 Tetratricopeptide repeat YPC_0377 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX YPC_0378 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase YPC_0378 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily YPC_0378 IPR039793 Uroporphyrinogen-III synthase YPC_0379 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site YPC_0379 IPR000860 Porphobilinogen deaminase YPC_0379 IPR022417 Porphobilinogen deaminase, N-terminal YPC_0379 IPR022418 Porphobilinogen deaminase, C-terminal YPC_0379 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily YPC_0382 IPR024685 Adenylate cyclase class-I, N-terminal domain YPC_0382 IPR024686 Adenylate cyclase class-I, conserved site YPC_0382 IPR000274 Adenylate cyclase, class-I YPC_0384 IPR002908 Frataxin/CyaY YPC_0384 IPR036524 Frataxin/CyaY superfamily YPC_0384 IPR020895 Frataxin conserved site YPC_0385 IPR032831 Prokaryotic lipoprotein-attachment site YPC_0386 IPR001653 Diaminopimelate epimerase, DapF YPC_0386 IPR018510 Diaminopimelate epimerase, active site YPC_0387 IPR029016 GAF-like domain superfamily YPC_0387 IPR007435 Protein of unknown function DUF484 YPC_0388 IPR010998 Integrase/recombinase, N-terminal YPC_0388 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPC_0388 IPR011931 Tyrosine recombinase XerC YPC_0388 IPR013762 Integrase-like, catalytic domain superfamily YPC_0388 IPR023009 Tyrosine recombinase XerC/XerD YPC_0388 IPR004107 Integrase, SAM-like, N-terminal YPC_0388 IPR002104 Integrase, catalytic domain YPC_0389 IPR006439 HAD hydrolase, subfamily IA YPC_0389 IPR023214 HAD superfamily YPC_0389 IPR036412 HAD-like superfamily YPC_0389 IPR041492 Haloacid dehalogenase-like hydrolase YPC_0390 IPR034739 UvrD/AddA helicase, N-terminal YPC_0390 IPR014016 UvrD-like helicase, ATP-binding domain YPC_0390 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0390 IPR000212 DNA helicase, UvrD/REP type YPC_0390 IPR014017 UvrD-like DNA helicase, C-terminal YPC_0390 IPR005753 DNA helicase, ATP-dependent, UvrD type YPC_0390 IPR013986 DExx box DNA helicase domain superfamily YPC_0392 IPR008322 Uncharacterised protein family UPF0261 YPC_0393 IPR013785 Aldolase-type TIM barrel YPC_0393 IPR009215 TIM-barrel domain, IGPS-like YPC_0393 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPC_0395 IPR004488 Magnesium/cobalt transport protein CorA YPC_0395 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB YPC_0396 IPR004626 RarD protein YPC_0396 IPR000620 EamA domain YPC_0397 IPR029069 HotDog domain superfamily YPC_0397 IPR003736 Phenylacetic acid degradation-related domain YPC_0397 IPR006683 Thioesterase domain YPC_0400 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0400 IPR004589 DNA helicase, ATP-dependent, RecQ type YPC_0400 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial YPC_0400 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_0400 IPR001650 Helicase, C-terminal YPC_0400 IPR002121 HRDC domain YPC_0400 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0400 IPR018982 RQC domain YPC_0400 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain YPC_0400 IPR010997 HRDC-like superfamily YPC_0400 IPR011545 DEAD/DEAH box helicase domain YPC_0401 IPR004778 Homoserine/Threonine efflux protein YPC_0401 IPR001123 Amino acid exporter protein, LeuE-type YPC_0402 IPR001123 Amino acid exporter protein, LeuE-type YPC_0402 IPR004778 Homoserine/Threonine efflux protein YPC_0403 IPR022742 Serine aminopeptidase, S33 YPC_0403 IPR029058 Alpha/Beta hydrolase fold YPC_0404 IPR023214 HAD superfamily YPC_0404 IPR000150 Cof family YPC_0404 IPR036412 HAD-like superfamily YPC_0404 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPC_0406 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPC_0406 IPR030395 Glycerophosphodiester phosphodiesterase domain YPC_0411 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YPC_0411 IPR014894 Protein DcrB YPC_0412 IPR003744 Queuosine precursor transporter YPC_0413 IPR022931 Sulfur carrier protein TusA YPC_0413 IPR001455 TusA-like domain YPC_0413 IPR036868 TusA-like domain superfamily YPC_0414 IPR023214 HAD superfamily YPC_0414 IPR018303 P-type ATPase, phosphorylation site YPC_0414 IPR023298 P-type ATPase, transmembrane domain superfamily YPC_0414 IPR036412 HAD-like superfamily YPC_0414 IPR036163 Heavy metal-associated domain superfamily YPC_0414 IPR027256 P-type ATPase, subfamily IB YPC_0414 IPR008250 P-type ATPase, A domain superfamily YPC_0414 IPR023299 P-type ATPase, cytoplasmic domain N YPC_0414 IPR001757 P-type ATPase YPC_0414 IPR017969 Heavy-metal-associated, conserved site YPC_0414 IPR006121 Heavy metal-associated domain, HMA YPC_0415 IPR023299 P-type ATPase, cytoplasmic domain N YPC_0415 IPR018303 P-type ATPase, phosphorylation site YPC_0415 IPR017969 Heavy-metal-associated, conserved site YPC_0415 IPR008250 P-type ATPase, A domain superfamily YPC_0415 IPR036412 HAD-like superfamily YPC_0415 IPR023214 HAD superfamily YPC_0415 IPR006121 Heavy metal-associated domain, HMA YPC_0415 IPR036163 Heavy metal-associated domain superfamily YPC_0415 IPR027256 P-type ATPase, subfamily IB YPC_0415 IPR001757 P-type ATPase YPC_0415 IPR023298 P-type ATPase, transmembrane domain superfamily YPC_0416 IPR012506 YhhN-like YPC_0419 IPR009525 Protein of unknown function DUF1145 YPC_0420 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_0420 IPR004398 RNA methyltransferase, RsmD YPC_0420 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPC_0421 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YPC_0421 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily YPC_0421 IPR036225 SRP/SRP receptor, N-terminal YPC_0421 IPR004390 Signal-recognition particle receptor FtsY YPC_0421 IPR013822 Signal recognition particle SRP54, helical bundle YPC_0421 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0421 IPR003593 AAA+ ATPase domain YPC_0421 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily YPC_0421 IPR036225 SRP/SRP receptor, N-terminal YPC_0421 IPR004390 Signal-recognition particle receptor FtsY YPC_0421 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YPC_0421 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0421 IPR013822 Signal recognition particle SRP54, helical bundle YPC_0421 IPR003593 AAA+ ATPase domain YPC_0422 IPR017871 ABC transporter, conserved site YPC_0422 IPR003593 AAA+ ATPase domain YPC_0422 IPR003439 ABC transporter-like YPC_0422 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0422 IPR005286 Cell division protein FtsE, ATP-binding YPC_0423 IPR004513 Cell division protein FtsX YPC_0423 IPR040690 FtsX, extracellular domain YPC_0423 IPR003838 ABC transporter permease protein domain YPC_0425 IPR013324 RNA polymerase sigma factor, region 3/4-like YPC_0425 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0425 IPR013325 RNA polymerase sigma factor, region 2 YPC_0425 IPR007630 RNA polymerase sigma-70 region 4 YPC_0425 IPR007627 RNA polymerase sigma-70 region 2 YPC_0425 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria YPC_0425 IPR009042 RNA polymerase sigma-70 region 1.2 YPC_0425 IPR000943 RNA polymerase sigma-70 YPC_0425 IPR014284 RNA polymerase sigma-70 like domain YPC_0427 IPR002686 Transposase IS200-like YPC_0427 IPR036515 Transposase IS200-like superfamily YPC_0428 IPR032900 PanD regulatory factor PanZ YPC_0428 IPR040448 PanZ, acetyltransferase (GNAT) domain YPC_0428 IPR016181 Acyl-CoA N-acyltransferase YPC_0428 IPR000182 GNAT domain YPC_0430 IPR000709 Leu/Ile/Val-binding protein YPC_0430 IPR028082 Periplasmic binding protein-like I YPC_0430 IPR028081 Leucine-binding protein domain YPC_0431 IPR001851 ABC transporter, permease YPC_0432 IPR001851 ABC transporter, permease YPC_0432 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal YPC_0433 IPR017871 ABC transporter, conserved site YPC_0433 IPR003439 ABC transporter-like YPC_0433 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal YPC_0433 IPR003593 AAA+ ATPase domain YPC_0433 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0434 IPR017871 ABC transporter, conserved site YPC_0434 IPR003593 AAA+ ATPase domain YPC_0434 IPR003439 ABC transporter-like YPC_0434 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein YPC_0434 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0443 IPR006061 Solute-binding family 1, conserved site YPC_0443 IPR006059 Bacterial extracellular solute-binding protein YPC_0444 IPR035906 MetI-like superfamily YPC_0444 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_0445 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_0445 IPR035906 MetI-like superfamily YPC_0445 IPR030165 sn-Glycerol-3-phosphate transport system permease protein UgpE YPC_0446 IPR003593 AAA+ ATPase domain YPC_0446 IPR017922 sn-Glycerol-3-phosphate import ATP-binding protein UgpC YPC_0446 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0446 IPR040582 MalK, OB fold domain YPC_0446 IPR003439 ABC transporter-like YPC_0446 IPR017871 ABC transporter, conserved site YPC_0446 IPR008995 Molybdate/tungstate binding, C-terminal YPC_0447 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPC_0447 IPR030395 Glycerophosphodiester phosphodiesterase domain YPC_0448 IPR004776 Membrane transport protein YPC_0449 IPR000620 EamA domain YPC_0449 IPR004779 Carboxylate/Amino Acid/Amine Transporter YPC_0450 IPR005119 LysR, substrate-binding YPC_0450 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0450 IPR036390 Winged helix DNA-binding domain superfamily YPC_0450 IPR037406 HTH-type transcriptional regulator MetR, PBP2 domain YPC_0450 IPR000847 Transcription regulator HTH, LysR YPC_0451 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal YPC_0451 IPR006276 Cobalamin-independent methionine synthase YPC_0451 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal YPC_0451 IPR038071 UROD/MetE-like superfamily YPC_0452 IPR029058 Alpha/Beta hydrolase fold YPC_0452 IPR002925 Dienelactone hydrolase YPC_0453 IPR010058 Uridine phosphorylase YPC_0453 IPR035994 Nucleoside phosphorylase superfamily YPC_0453 IPR000845 Nucleoside phosphorylase domain YPC_0453 IPR018016 Nucleoside phosphorylase, conserved site YPC_0455 IPR025299 CstA, C-terminal domain YPC_0455 IPR003706 CstA, N-terminal domain YPC_0456 IPR032816 SNARE associated Golgi protein YPC_0456 IPR032818 DedA family YPC_0457 IPR003798 DNA recombination RmuC YPC_0458 IPR004033 UbiE/COQ5 methyltransferase YPC_0458 IPR023576 UbiE/COQ5 methyltransferase, conserved site YPC_0458 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_0459 IPR036527 SCP2 sterol-binding domain superfamily YPC_0459 IPR038989 Ubiquinone biosynthesis protein UbiJ YPC_0459 IPR003033 SCP2 sterol-binding domain YPC_0460 IPR010232 Probable protein kinase UbiB YPC_0460 IPR004147 UbiB domain YPC_0460 IPR011009 Protein kinase-like domain superfamily YPC_0461 IPR003369 Sec-independent protein translocase protein TatA/B/E YPC_0461 IPR006312 Sec-independent protein translocase protein TatA/E YPC_0462 IPR018448 Twin-arginine translocation protein TatB YPC_0463 IPR019820 Sec-independent periplasmic protein translocase, conserved site YPC_0463 IPR002033 Sec-independent periplasmic protein translocase TatC YPC_0464 IPR032466 Metal-dependent hydrolase YPC_0464 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPC_0464 IPR001130 TatD family YPC_0464 IPR024918 3'-5' ssDNA/RNA exonuclease TatD YPC_0466 IPR001584 Integrase, catalytic core YPC_0466 IPR036397 Ribonuclease H superfamily YPC_0466 IPR006120 Resolvase, HTH domain YPC_0466 IPR012337 Ribonuclease H-like superfamily YPC_0466 IPR017894 HTH domain, IS21 transposase-type YPC_0467 IPR002611 IstB-like ATP-binding protein YPC_0467 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_0467 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0467 IPR003593 AAA+ ATPase domain YPC_0467 IPR001270 ClpA/B family YPC_0468 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPC_0468 IPR001130 TatD family YPC_0468 IPR024918 3'-5' ssDNA/RNA exonuclease TatD YPC_0468 IPR032466 Metal-dependent hydrolase YPC_0469 IPR001731 Delta-aminolevulinic acid dehydratase YPC_0469 IPR030656 Delta-aminolevulinic acid dehydratase, active site YPC_0469 IPR013785 Aldolase-type TIM barrel YPC_0470 IPR010215 Transcription antitermination protein RfaH YPC_0470 IPR006645 NusG, N-terminal YPC_0470 IPR036735 NusG, N-terminal domain superfamily YPC_0471 IPR002830 UbiD decarboxylyase family YPC_0471 IPR023677 UbiD decarboxylyase, bacteria YPC_0472 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPC_0472 IPR017927 FAD-binding domain, ferredoxin reductase-type YPC_0472 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPC_0472 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPC_0472 IPR017938 Riboflavin synthase-like beta-barrel YPC_0473 IPR020617 Thiolase, C-terminal YPC_0473 IPR020616 Thiolase, N-terminal YPC_0473 IPR016039 Thiolase-like YPC_0473 IPR020615 Thiolase, acyl-enzyme intermediate active site YPC_0473 IPR012805 Acetyl-CoA C-acyltransferase FadA YPC_0473 IPR002155 Thiolase YPC_0473 IPR020613 Thiolase, conserved site YPC_0473 IPR020610 Thiolase, active site YPC_0474 IPR029045 ClpP/crotonase-like domain superfamily YPC_0474 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPC_0474 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal YPC_0474 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPC_0474 IPR001753 Enoyl-CoA hydratase/isomerase YPC_0474 IPR012799 Fatty oxidation complex, alpha subunit FadB YPC_0474 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding YPC_0474 IPR036291 NAD(P)-binding domain superfamily YPC_0474 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site YPC_0475 IPR000994 Peptidase M24 YPC_0475 IPR022846 Xaa-Pro dipeptidase YPC_0475 IPR036005 Creatinase/aminopeptidase-like YPC_0475 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPC_0475 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPC_0476 IPR035647 EF-G domain III/V-like YPC_0476 IPR036956 Impact, N-terminal domain superfamily YPC_0476 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_0476 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal YPC_0476 IPR015796 Impact family, bacterial/archaeal YPC_0476 IPR023582 Impact family YPC_0476 IPR001498 Impact, N-terminal YPC_0476 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site YPC_0478 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_0478 IPR023582 Impact family YPC_0478 IPR035647 EF-G domain III/V-like YPC_0478 IPR015796 Impact family, bacterial/archaeal YPC_0478 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site YPC_0478 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal YPC_0478 IPR001498 Impact, N-terminal YPC_0478 IPR036956 Impact, N-terminal domain superfamily YPC_0479 IPR003445 Cation transporter YPC_0479 IPR004772 TrkH potassium transport family YPC_0480 IPR026816 Flavodoxin domain YPC_0480 IPR001226 Flavodoxin, conserved site YPC_0480 IPR008254 Flavodoxin/nitric oxide synthase YPC_0480 IPR029039 Flavoprotein-like superfamily YPC_0489 IPR004566 Pantothenate kinase YPC_0489 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0489 IPR006083 Phosphoribulokinase/uridine kinase YPC_0490 IPR000182 GNAT domain YPC_0490 IPR016181 Acyl-CoA N-acyltransferase YPC_0492 IPR012337 Ribonuclease H-like superfamily YPC_0492 IPR006120 Resolvase, HTH domain YPC_0492 IPR001584 Integrase, catalytic core YPC_0492 IPR017894 HTH domain, IS21 transposase-type YPC_0492 IPR036397 Ribonuclease H superfamily YPC_0493 IPR003593 AAA+ ATPase domain YPC_0493 IPR001270 ClpA/B family YPC_0493 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0493 IPR002611 IstB-like ATP-binding protein YPC_0493 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_0498 IPR004161 Translation elongation factor EFTu-like, domain 2 YPC_0498 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YPC_0498 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YPC_0498 IPR033720 Elongation factor Tu, domain 2 YPC_0498 IPR031157 Tr-type G domain, conserved site YPC_0498 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain YPC_0498 IPR005225 Small GTP-binding protein domain YPC_0498 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0498 IPR000795 Transcription factor, GTP-binding domain YPC_0498 IPR009000 Translation protein, beta-barrel domain superfamily YPC_0498 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPC_0499 IPR038379 SecE superfamily YPC_0499 IPR005807 SecE subunit of protein translocation complex, bacterial-like YPC_0499 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit YPC_0500 IPR008991 Translation protein SH3-like domain superfamily YPC_0500 IPR005824 KOW YPC_0500 IPR006645 NusG, N-terminal YPC_0500 IPR036735 NusG, N-terminal domain superfamily YPC_0500 IPR014722 Ribosomal protein L2, domain 2 YPC_0500 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site YPC_0500 IPR001062 Transcription antitermination protein, NusG YPC_0501 IPR020785 Ribosomal protein L11, conserved site YPC_0501 IPR006519 Ribosomal protein L11, bacterial-type YPC_0501 IPR000911 Ribosomal protein L11/L12 YPC_0501 IPR020784 Ribosomal protein L11, N-terminal YPC_0501 IPR020783 Ribosomal protein L11, C-terminal YPC_0501 IPR036769 Ribosomal protein L11, C-terminal domain superfamily YPC_0501 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily YPC_0502 IPR023674 Ribosomal protein L1-like YPC_0502 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein YPC_0502 IPR002143 Ribosomal protein L1 YPC_0502 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich YPC_0502 IPR023673 Ribosomal protein L1, conserved site YPC_0502 IPR005878 Ribosomal protein L1, bacterial-type YPC_0503 IPR022973 Ribosomal protein L10 YPC_0503 IPR002363 Ribosomal protein L10, eubacterial, conserved site YPC_0503 IPR001790 Ribosomal protein L10P YPC_0504 IPR000206 Ribosomal protein L7/L12 YPC_0504 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YPC_0504 IPR013823 Ribosomal protein L7/L12, C-terminal YPC_0504 IPR008932 Ribosomal protein L7/L12, oligomerisation YPC_0504 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily YPC_0505 IPR015712 DNA-directed RNA polymerase, subunit 2 YPC_0505 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain YPC_0505 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily YPC_0505 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type YPC_0505 IPR007121 RNA polymerase, beta subunit, conserved site YPC_0505 IPR007644 RNA polymerase, beta subunit, protrusion YPC_0505 IPR007642 RNA polymerase Rpb2, domain 2 YPC_0505 IPR037034 RNA polymerase Rpb2, domain 2 superfamily YPC_0505 IPR007645 RNA polymerase Rpb2, domain 3 YPC_0505 IPR007641 RNA polymerase Rpb2, domain 7 YPC_0505 IPR014724 RNA polymerase Rpb2, OB-fold YPC_0505 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain YPC_0506 IPR038120 RNA polymerase Rpb1, funnel domain superfamily YPC_0506 IPR007081 RNA polymerase Rpb1, domain 5 YPC_0506 IPR007083 RNA polymerase Rpb1, domain 4 YPC_0506 IPR007066 RNA polymerase Rpb1, domain 3 YPC_0506 IPR000722 RNA polymerase, alpha subunit YPC_0506 IPR012754 DNA-directed RNA polymerase, subunit beta-prime YPC_0506 IPR042102 RNA polymerase Rpb1, domain 3 superfamily YPC_0506 IPR006592 RNA polymerase, N-terminal YPC_0506 IPR007080 RNA polymerase Rpb1, domain 1 YPC_0507 IPR036515 Transposase IS200-like superfamily YPC_0507 IPR002686 Transposase IS200-like YPC_0514 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B YPC_0514 IPR025747 ThiC-associated domain YPC_0514 IPR037509 Phosphomethylpyrimidine synthase YPC_0514 IPR038521 ThiC/Bza superfamily YPC_0515 IPR038309 Rsd/AlgQ superfamily YPC_0515 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd YPC_0515 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPC_0516 IPR022925 NADH pyrophosphatase NudC YPC_0516 IPR015376 Zinc ribbon, NADH pyrophosphatase YPC_0516 IPR000086 NUDIX hydrolase domain YPC_0516 IPR020084 NUDIX hydrolase, conserved site YPC_0516 IPR015797 NUDIX hydrolase-like domain superfamily YPC_0518 IPR038071 UROD/MetE-like superfamily YPC_0518 IPR006361 Uroporphyrinogen decarboxylase HemE YPC_0518 IPR000257 Uroporphyrinogen decarboxylase (URO-D) YPC_0519 IPR007581 Endonuclease V YPC_0520 IPR007338 Protein of unknown function DUF416 YPC_0520 IPR023381 YP001051499.1-like domain superfamily YPC_0522 IPR020816 Histone-like DNA-binding protein, conserved site YPC_0522 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily YPC_0522 IPR000119 Histone-like DNA-binding protein YPC_0523 IPR016500 Uncharacterised conserved protein UCP006993 YPC_0523 IPR010858 Protein of unknown function DUF1481 YPC_0524 IPR000115 Phosphoribosylglycinamide synthetase YPC_0524 IPR020560 Phosphoribosylglycinamide synthetase, C-domain YPC_0524 IPR020559 Phosphoribosylglycinamide synthetase, conserved site YPC_0524 IPR016185 Pre-ATP-grasp domain superfamily YPC_0524 IPR011054 Rudiment single hybrid motif YPC_0524 IPR011761 ATP-grasp fold YPC_0524 IPR013815 ATP-grasp fold, subdomain 1 YPC_0524 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPC_0524 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal YPC_0524 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily YPC_0525 IPR016193 Cytidine deaminase-like YPC_0525 IPR024051 AICAR transformylase, duplicated domain superfamily YPC_0525 IPR011607 Methylglyoxal synthase-like domain YPC_0525 IPR036914 Methylglyoxal synthase-like domain superfamily YPC_0525 IPR002695 Bifunctional purine biosynthesis protein PurH-like YPC_0532 IPR009057 Homeobox-like domain superfamily YPC_0532 IPR002514 Transposase IS3/IS911family YPC_0533 IPR036397 Ribonuclease H superfamily YPC_0533 IPR025948 HTH-like domain YPC_0533 IPR001584 Integrase, catalytic core YPC_0533 IPR012337 Ribonuclease H-like superfamily YPC_0534 IPR003593 AAA+ ATPase domain YPC_0534 IPR002611 IstB-like ATP-binding protein YPC_0534 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_0534 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0534 IPR001270 ClpA/B family YPC_0535 IPR017894 HTH domain, IS21 transposase-type YPC_0535 IPR036397 Ribonuclease H superfamily YPC_0535 IPR012337 Ribonuclease H-like superfamily YPC_0535 IPR006120 Resolvase, HTH domain YPC_0535 IPR001584 Integrase, catalytic core YPC_0536 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPC_0536 IPR016039 Thiolase-like YPC_0536 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPC_0536 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_0536 IPR032821 Ketoacyl-synthetase, C-terminal extension YPC_0536 IPR014030 Beta-ketoacyl synthase, N-terminal YPC_0536 IPR014031 Beta-ketoacyl synthase, C-terminal YPC_0536 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_0536 IPR001242 Condensation domain YPC_0536 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPC_0536 IPR009081 Phosphopantetheine binding ACP domain YPC_0536 IPR042099 AMP-dependent synthetase-like superfamily YPC_0536 IPR000873 AMP-dependent synthetase/ligase YPC_0536 IPR018201 Beta-ketoacyl synthase, active site YPC_0536 IPR025110 AMP-binding enzyme, C-terminal domain YPC_0536 IPR005814 Aminotransferase class-III YPC_0536 IPR036736 ACP-like superfamily YPC_0536 IPR010071 Amino acid adenylation domain YPC_0536 IPR006162 Phosphopantetheine attachment site YPC_0536 IPR015424 Pyridoxal phosphate-dependent transferase YPC_0536 IPR020845 AMP-binding, conserved site YPC_0537 IPR012910 TonB-dependent receptor, plug domain YPC_0537 IPR000531 TonB-dependent receptor-like, beta-barrel YPC_0537 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPC_0537 IPR010105 TonB-dependent siderophore receptor YPC_0537 IPR039426 Vitamin B12 transporter BtuB-like YPC_0538 IPR002933 Peptidase M20 YPC_0538 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPC_0538 IPR010161 Peptidase M20B, tripeptide aminopeptidase YPC_0538 IPR011650 Peptidase M20, dimerisation domain YPC_0538 IPR036264 Bacterial exopeptidase dimerisation domain YPC_0539 IPR011540 AbgT, Proteobacteria YPC_0539 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT YPC_0541 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPC_0541 IPR029487 Novel E3 ligase domain YPC_0541 IPR032675 Leucine-rich repeat domain superfamily YPC_0542 IPR029487 Novel E3 ligase domain YPC_0542 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPC_0542 IPR032675 Leucine-rich repeat domain superfamily YPC_0542 IPR032675 Leucine-rich repeat domain superfamily YPC_0542 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPC_0542 IPR029487 Novel E3 ligase domain YPC_0544 IPR029487 Novel E3 ligase domain YPC_0544 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPC_0544 IPR032675 Leucine-rich repeat domain superfamily YPC_0548 IPR002110 Ankyrin repeat YPC_0548 IPR036770 Ankyrin repeat-containing domain superfamily YPC_0548 IPR012927 ShET2 enterotoxin, N-terminal YPC_0549 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPC_0549 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPC_0549 IPR001036 Acriflavin resistance protein YPC_0550 IPR006143 RND efflux pump, membrane fusion protein YPC_0550 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPC_0553 IPR000160 GGDEF domain YPC_0553 IPR005330 MHYT domain YPC_0553 IPR035919 EAL domain superfamily YPC_0553 IPR035965 PAS domain superfamily YPC_0553 IPR029787 Nucleotide cyclase YPC_0553 IPR001633 EAL domain YPC_0553 IPR000014 PAS domain YPC_0554 IPR012337 Ribonuclease H-like superfamily YPC_0554 IPR036397 Ribonuclease H superfamily YPC_0554 IPR001584 Integrase, catalytic core YPC_0554 IPR038965 Transposase InsF-like YPC_0554 IPR025948 HTH-like domain YPC_0556 IPR000589 Ribosomal protein S15 YPC_0556 IPR005290 Ribosomal protein S15, bacterial-type YPC_0556 IPR009068 S15/NS1, RNA-binding YPC_0557 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPC_0557 IPR036974 PUA domain superfamily YPC_0557 IPR002501 Pseudouridine synthase II, N-terminal YPC_0557 IPR015947 PUA-like superfamily YPC_0557 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal YPC_0557 IPR014780 tRNA pseudouridine synthase II, TruB YPC_0557 IPR032819 tRNA pseudouridylate synthase B, C-terminal YPC_0558 IPR020053 Ribosome-binding factor A, conserved site YPC_0558 IPR023799 Ribosome-binding factor A domain superfamily YPC_0558 IPR015946 K homology domain-like, alpha/beta YPC_0558 IPR000238 Ribosome-binding factor A YPC_0559 IPR005225 Small GTP-binding protein domain YPC_0559 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0559 IPR000795 Transcription factor, GTP-binding domain YPC_0559 IPR000178 Translation initiation factor aIF-2, bacterial-like YPC_0559 IPR023115 Translation initiation factor IF- 2, domain 3 YPC_0559 IPR006847 Translation initiation factor IF-2, N-terminal YPC_0559 IPR015760 Translation initiation factor IF- 2 YPC_0559 IPR013575 Initiation factor 2 associated domain, bacterial YPC_0559 IPR004161 Translation elongation factor EFTu-like, domain 2 YPC_0559 IPR009000 Translation protein, beta-barrel domain superfamily YPC_0559 IPR009061 Putative DNA-binding domain superfamily YPC_0559 IPR036925 Translation initiation factor IF-2, domain 3 superfamily YPC_0560 IPR022967 RNA-binding domain, S1 YPC_0560 IPR010213 Transcription termination factor NusA YPC_0560 IPR015946 K homology domain-like, alpha/beta YPC_0560 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical YPC_0560 IPR030842 Transcription termination/antitermination protein NusA, bacterial YPC_0560 IPR036555 NusA, N-terminal domain superfamily YPC_0560 IPR013735 Transcription factor NusA, N-terminal YPC_0560 IPR025249 KH domain, NusA-like YPC_0560 IPR009019 K homology domain superfamily, prokaryotic type YPC_0560 IPR003029 S1 domain YPC_0560 IPR012340 Nucleic acid-binding, OB-fold YPC_0560 IPR010214 Transcription termination factor NusA, C-terminal duplication YPC_0561 IPR028998 Ribosome maturation factor RimP, C-terminal YPC_0561 IPR035956 RimP, N-terminal domain superfamily YPC_0561 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily YPC_0561 IPR003728 Ribosome maturation factor RimP YPC_0561 IPR028989 Ribosome maturation factor RimP, N-terminal YPC_0564 IPR004692 Preprotein translocase SecG subunit YPC_0565 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPC_0565 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YPC_0565 IPR016066 Alpha-D-phosphohexomutase, conserved site YPC_0565 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPC_0565 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPC_0565 IPR006352 Phosphoglucosamine mutase, bacterial type YPC_0565 IPR005841 Alpha-D-phosphohexomutase superfamily YPC_0565 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPC_0565 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPC_0566 IPR011005 Dihydropteroate synthase-like YPC_0566 IPR000489 Pterin-binding domain YPC_0566 IPR006390 Dihydropteroate synthase YPC_0567 IPR037219 Peptidase M41-like YPC_0567 IPR005936 Peptidase, FtsH YPC_0567 IPR000642 Peptidase M41 YPC_0567 IPR003959 ATPase, AAA-type, core YPC_0567 IPR003593 AAA+ ATPase domain YPC_0567 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0567 IPR011546 Peptidase M41, FtsH extracellular YPC_0567 IPR003960 ATPase, AAA-type, conserved site YPC_0567 IPR041569 AAA ATPase, AAA+ lid domain YPC_0568 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_0568 IPR015507 Ribosomal RNA large subunit methyltransferase E YPC_0568 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria YPC_0568 IPR002877 Ribosomal RNA methyltransferase FtsJ domain YPC_0569 IPR017924 RNA-binding protein YhbY YPC_0569 IPR001890 RNA-binding, CRM domain YPC_0569 IPR035920 YhbY-like superfamily YPC_0571 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPC_0571 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily YPC_0571 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal YPC_0571 IPR018151 Transcription elongation factor, GreA/GreB, conserved site YPC_0571 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily YPC_0571 IPR028624 Transcription elongation factor GreA/GreB YPC_0571 IPR023459 Transcription elongation factor GreA/GreB family YPC_0571 IPR006359 Transcription elongation factor GreA YPC_0572 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C YPC_0572 IPR012338 Beta-lactamase/transpeptidase-like YPC_0573 IPR001867 OmpR/PhoB-type DNA-binding domain YPC_0573 IPR001789 Signal transduction response regulator, receiver domain YPC_0573 IPR039420 Transcriptional regulatory protein WalR-like YPC_0573 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0573 IPR011006 CheY-like superfamily YPC_0574 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_0574 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_0574 IPR005467 Histidine kinase domain YPC_0574 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_0574 IPR003594 Histidine kinase/HSP90-like ATPase YPC_0574 IPR003660 HAMP domain YPC_0574 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_0575 IPR035101 GTP-binding protein, Obg-type YPC_0575 IPR031167 OBG-type guanine nucleotide-binding (G) domain YPC_0575 IPR006074 GTP1/OBG, conserved site YPC_0575 IPR006169 GTP1/OBG domain YPC_0575 IPR036726 GTP1/OBG domain superfamily YPC_0575 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0575 IPR014100 GTP-binding protein Obg/CgtA YPC_0575 IPR006073 GTP binding domain YPC_0576 IPR000620 EamA domain YPC_0577 IPR001684 Ribosomal protein L27 YPC_0577 IPR018261 Ribosomal protein L27, conserved site YPC_0578 IPR028909 Ribosomal protein L21-like YPC_0578 IPR036164 L21-like superfamily YPC_0578 IPR018258 Ribosomal protein L21, conserved site YPC_0578 IPR001787 Ribosomal protein L21 YPC_0579 IPR033749 Polyprenyl synthetase, conserved site YPC_0579 IPR000092 Polyprenyl synthetase YPC_0579 IPR008949 Isoprenoid synthase domain superfamily YPC_0581 IPR038722 Ner, winged helix-turn-helix DNA-binding domain YPC_0581 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_0582 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal YPC_0582 IPR036291 NAD(P)-binding domain superfamily YPC_0582 IPR023958 Malate dehydrogenase, type 1, bacterial YPC_0582 IPR001236 Lactate/malate dehydrogenase, N-terminal YPC_0582 IPR022383 Lactate/malate dehydrogenase, C-terminal YPC_0582 IPR001252 Malate dehydrogenase, active site YPC_0582 IPR001557 L-lactate/malate dehydrogenase YPC_0582 IPR010097 Malate dehydrogenase, type 1 YPC_0583 IPR036390 Winged helix DNA-binding domain superfamily YPC_0583 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0583 IPR020900 Arginine repressor, DNA-binding domain YPC_0583 IPR020899 Arginine repressor, C-terminal YPC_0583 IPR001669 Arginine repressor YPC_0583 IPR036251 Arginine repressor, C-terminal domain superfamily YPC_0586 IPR000713 Mur ligase, N-terminal catalytic domain YPC_0586 IPR013221 Mur ligase, central YPC_0586 IPR036615 Mur ligase, C-terminal domain superfamily YPC_0586 IPR036565 Mur-like, catalytic domain superfamily YPC_0586 IPR004101 Mur ligase, C-terminal YPC_0586 IPR005757 Murein peptide ligase YPC_0587 IPR028343 Fructose-1,6-bisphosphatase YPC_0587 IPR020548 Fructose-1,6-bisphosphatase, active site YPC_0587 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal YPC_0587 IPR000146 Fructose-1,6-bisphosphatase class 1 YPC_0588 IPR036649 Inorganic pyrophosphatase superfamily YPC_0588 IPR008162 Inorganic pyrophosphatase YPC_0589 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily YPC_0589 IPR039126 Gamma-glutamylaminecyclotransferase YPC_0589 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like YPC_0589 IPR013024 Gamma-glutamyl cyclotransferase-like YPC_0592 IPR000184 Bacterial surface antigen (D15) YPC_0592 IPR035243 TamA, POTRA domain 1 YPC_0592 IPR034746 POTRA domain YPC_0592 IPR039910 Surface antigen D15-like YPC_0592 IPR010827 POTRA domain, BamA/TamA-like YPC_0593 IPR002569 Peptide methionine sulphoxide reductase MsrA YPC_0593 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily YPC_0594 IPR016169 FAD-binding, type PCMH, subdomain 2 YPC_0594 IPR036318 FAD-binding, type PCMH-like superfamily YPC_0594 IPR002550 CNNM, transmembrane domain YPC_0594 IPR000644 CBS domain YPC_0594 IPR005170 Transporter-associated domain YPC_0595 IPR009491 Protein of unknown function DUF1107 YPC_0596 IPR006513 Conserved hypothetical protein CHP01626, YtfJ YPC_0597 IPR000760 Inositol monophosphatase-like YPC_0597 IPR020550 Inositol monophosphatase, conserved site YPC_0597 IPR020583 Inositol monophosphatase, metal-binding site YPC_0597 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ YPC_0598 IPR006179 5'-Nucleotidase/apyrase YPC_0598 IPR029052 Metallo-dependent phosphatase-like YPC_0598 IPR041827 CpdB, N-terminal metallophosphatase domain YPC_0598 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPC_0598 IPR006146 5'-Nucleotidase, conserved site YPC_0598 IPR036907 5'-Nucleotidase, C-terminal domain superfamily YPC_0598 IPR008334 5'-Nucleotidase, C-terminal YPC_0598 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase YPC_0599 IPR019903 Repair of iron centres family YPC_0599 IPR012312 Haemerythrin-like YPC_0599 IPR023742 Iron-sulfur cluster repair protein YftE YPC_0600 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily YPC_0600 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPC_0600 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YPC_0601 IPR007340 Opacity-associated protein A YPC_0601 IPR013731 Opacity-associated protein A, N-terminal YPC_0603 IPR036515 Transposase IS200-like superfamily YPC_0603 IPR002686 Transposase IS200-like YPC_0605 IPR020070 Ribosomal protein L9, N-terminal YPC_0605 IPR036791 Ribosomal protein L9, C-terminal domain superfamily YPC_0605 IPR009027 Ribosomal protein L9/RNase H1, N-terminal YPC_0605 IPR036935 Ribosomal protein L9, N-terminal domain superfamily YPC_0605 IPR000244 Ribosomal protein L9 YPC_0605 IPR020594 Ribosomal protein L9, bacteria/chloroplast YPC_0605 IPR020069 Ribosomal protein L9, C-terminal YPC_0606 IPR036870 Ribosomal protein S18 superfamily YPC_0606 IPR018275 Ribosomal protein S18, conserved site YPC_0606 IPR001648 Ribosomal protein S18 YPC_0607 IPR000424 Primosome PriB/single-strand DNA-binding YPC_0607 IPR012340 Nucleic acid-binding, OB-fold YPC_0607 IPR023646 Primosomal replication protein PriB YPC_0608 IPR000529 Ribosomal protein S6 YPC_0608 IPR020815 Ribosomal protein S6, conserved site YPC_0608 IPR020814 Ribosomal protein S6, plastid/chloroplast YPC_0608 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 YPC_0608 IPR035980 Ribosomal protein S6 superfamily YPC_0610 IPR029058 Alpha/Beta hydrolase fold YPC_0610 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain YPC_0611 IPR017894 HTH domain, IS21 transposase-type YPC_0611 IPR001584 Integrase, catalytic core YPC_0611 IPR036397 Ribonuclease H superfamily YPC_0611 IPR012337 Ribonuclease H-like superfamily YPC_0611 IPR006120 Resolvase, HTH domain YPC_0612 IPR003593 AAA+ ATPase domain YPC_0612 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0612 IPR002611 IstB-like ATP-binding protein YPC_0612 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_0612 IPR001270 ClpA/B family YPC_0614 IPR010854 Domain of unknown function DUF1471 YPC_0614 IPR025543 Dodecin-like YPC_0614 IPR036275 YdgH-like superfamily YPC_0615 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily YPC_0615 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain YPC_0615 IPR034184 Putative acyl-CoA dehydrogenase AidB YPC_0615 IPR006089 Acyl-CoA dehydrogenase, conserved site YPC_0615 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal YPC_0615 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal YPC_0615 IPR041504 Adaptive response protein AidB, N-terminal YPC_0617 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPC_0617 IPR013123 RNA 2-O ribose methyltransferase, substrate binding YPC_0617 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPC_0617 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB YPC_0617 IPR029028 Alpha/beta knot methyltransferases YPC_0617 IPR004441 RNA methyltransferase TrmH family YPC_0617 IPR029064 50S ribosomal protein L30e-like YPC_0619 IPR011129 Cold shock domain YPC_0619 IPR040476 RNase II/RNase R, cold shock domain YPC_0619 IPR012340 Nucleic acid-binding, OB-fold YPC_0619 IPR022967 RNA-binding domain, S1 YPC_0619 IPR011805 Ribonuclease R YPC_0619 IPR004476 Ribonuclease II/ribonuclease R YPC_0619 IPR013223 Ribonuclease B, N-terminal OB domain YPC_0619 IPR013668 Ribonuclease R winged-helix domain YPC_0619 IPR001900 Ribonuclease II/R YPC_0619 IPR022966 Ribonuclease II/R, conserved site YPC_0619 IPR003029 S1 domain YPC_0620 IPR036390 Winged helix DNA-binding domain superfamily YPC_0620 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0620 IPR023761 Transcriptional repressor HTH, NsrR YPC_0620 IPR030489 Transcription regulator Rrf2-type, conserved site YPC_0620 IPR000944 Transcription regulator Rrf2-type YPC_0621 IPR018220 Adenylosuccinate synthase, GTP-binding site YPC_0621 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0621 IPR033128 Adenylosuccinate synthase, active site YPC_0621 IPR001114 Adenylosuccinate synthetase YPC_0621 IPR042111 Adenylosuccinate synthetase, domain 3 YPC_0621 IPR042110 Adenylosuccinate synthetase, domain 2 YPC_0621 IPR042109 Adenylosuccinate synthetase, domain 1 YPC_0622 IPR019201 Protein of unknown function DUF2065 YPC_0623 IPR036013 Band 7/SPFH domain superfamily YPC_0623 IPR010200 HflC YPC_0623 IPR001107 Band 7 domain YPC_0624 IPR010201 HflK YPC_0624 IPR020980 Menbrane protein HflK, N-terminal YPC_0624 IPR036013 Band 7/SPFH domain superfamily YPC_0624 IPR001107 Band 7 domain YPC_0624 IPR001972 Stomatin family YPC_0625 IPR030394 HflX-type guanine nucleotide-binding (G) domain YPC_0625 IPR035647 EF-G domain III/V-like YPC_0625 IPR006073 GTP binding domain YPC_0625 IPR032305 GTP-binding protein, middle domain YPC_0625 IPR016496 GTPase HflX YPC_0625 IPR025121 GTPase HflX, N-terminal YPC_0625 IPR042108 GTPase HflX, N-terminal domain superfamily YPC_0625 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0626 IPR010920 LSM domain superfamily YPC_0626 IPR005001 RNA-binding protein Hfq YPC_0627 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0627 IPR018022 IPP transferase YPC_0627 IPR039657 Dimethylallyltransferase YPC_0628 IPR014762 DNA mismatch repair, conserved site YPC_0628 IPR014790 MutL, C-terminal, dimerisation YPC_0628 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_0628 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPC_0628 IPR037198 MutL, C-terminal domain superfamily YPC_0628 IPR013507 DNA mismatch repair protein, S5 domain 2-like YPC_0628 IPR002099 DNA mismatch repair protein family, N-terminal YPC_0628 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_0628 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms YPC_0628 IPR042120 MutL, C-terminal domain, dimerisation subdomain YPC_0628 IPR042121 MutL, C-terminal domain, regulatory subdomain YPC_0628 IPR020667 DNA mismatch repair protein, MutL YPC_0629 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain YPC_0630 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0630 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE YPC_0631 IPR036652 YjeF N-terminal domain superfamily YPC_0631 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr YPC_0631 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase YPC_0631 IPR017953 Carbohydrate kinase, predicted, conserved site YPC_0631 IPR029056 Ribokinase-like YPC_0631 IPR004443 YjeF N-terminal domain YPC_0632 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_0632 IPR004453 Epoxyqueuosine reductase QueG YPC_0632 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPC_0632 IPR013542 Domain of unknown function DUF1730 YPC_0632 IPR009051 Alpha-helical ferredoxin YPC_0636 IPR022894 Oligoribonuclease YPC_0636 IPR013520 Exonuclease, RNase T/DNA polymerase III YPC_0636 IPR012337 Ribonuclease H-like superfamily YPC_0636 IPR036397 Ribonuclease H superfamily YPC_0637 IPR010914 RsgA GTPase domain YPC_0637 IPR004881 Ribosome biogenesis GTPase RsgA YPC_0637 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0637 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain YPC_0638 IPR003817 Phosphatidylserine decarboxylase-related YPC_0638 IPR033177 Phosphatidylserine decarboxylase YPC_0638 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 YPC_0639 IPR024393 Mechanosensitive ion channel MscS, porin domain YPC_0639 IPR006685 Mechanosensitive ion channel MscS YPC_0639 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPC_0639 IPR006686 Mechanosensitive ion channel MscS, conserved site YPC_0639 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPC_0639 IPR023408 Mechanosensitive ion channel MscS domain superfamily YPC_0639 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YPC_0639 IPR010920 LSM domain superfamily YPC_0640 IPR006195 Aminoacyl-tRNA synthetase, class II YPC_0640 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPC_0640 IPR004525 Elongation factor P--(R)-beta-lysine ligase YPC_0640 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal YPC_0642 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_0642 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPC_0642 IPR005884 Fumarate reductase, flavoprotein subunit YPC_0642 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily YPC_0642 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YPC_0642 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily YPC_0642 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site YPC_0642 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YPC_0643 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPC_0643 IPR036010 2Fe-2S ferredoxin-like superfamily YPC_0643 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPC_0643 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein YPC_0643 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_0643 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPC_0643 IPR012675 Beta-grasp domain superfamily YPC_0643 IPR009051 Alpha-helical ferredoxin YPC_0643 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal YPC_0644 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YPC_0644 IPR003510 Fumarate reductase, subunit C YPC_0645 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YPC_0645 IPR003418 Fumarate reductase, subunit D YPC_0646 IPR000390 Small multidrug resistance protein family YPC_0647 IPR001059 Translation elongation factor P/YeiP, central YPC_0647 IPR015365 Elongation factor P, C-terminal YPC_0647 IPR012340 Nucleic acid-binding, OB-fold YPC_0647 IPR014722 Ribosomal protein L2, domain 2 YPC_0647 IPR020599 Translation elongation factor P/YeiP YPC_0647 IPR013852 Translation elongation factor P/YeiP, conserved site YPC_0647 IPR011768 Translation elongation factor P YPC_0647 IPR008991 Translation protein SH3-like domain superfamily YPC_0647 IPR013185 Translation elongation factor, KOW-like YPC_0648 IPR013785 Aldolase-type TIM barrel YPC_0648 IPR022462 Lysine-2,3-aminomutase-like YPC_0648 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase YPC_0648 IPR007197 Radical SAM YPC_0649 IPR025294 Protein of unknown function DUF4156 YPC_0650 IPR027413 GroEL-like equatorial domain superfamily YPC_0650 IPR027409 GroEL-like apical domain superfamily YPC_0650 IPR002423 Chaperonin Cpn60/TCP-1 family YPC_0650 IPR027410 TCP-1-like chaperonin intermediate domain superfamily YPC_0650 IPR001844 Chaperonin Cpn60 YPC_0650 IPR018370 Chaperonin Cpn60, conserved site YPC_0651 IPR018369 Chaperonin GroES, conserved site YPC_0651 IPR020818 GroES chaperonin family YPC_0651 IPR011032 GroES-like superfamily YPC_0651 IPR037124 GroES chaperonin superfamily YPC_0652 IPR007313 FxsA cytoplasmic membrane protein YPC_0654 IPR008948 L-Aspartase-like YPC_0654 IPR022761 Fumarate lyase, N-terminal YPC_0654 IPR000362 Fumarate lyase family YPC_0654 IPR020557 Fumarate lyase, conserved site YPC_0654 IPR018951 Fumarase C, C-terminal YPC_0654 IPR004708 Aspartate ammonia-lyase YPC_0654 IPR024083 Fumarase/histidase, N-terminal YPC_0655 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPC_0656 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPC_0656 IPR023700 Divalent cation tolerance protein CutA, Enterobacteria YPC_0656 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPC_0656 IPR004323 Divalent ion tolerance protein, CutA YPC_0657 IPR017937 Thioredoxin, conserved site YPC_0657 IPR036249 Thioredoxin-like superfamily YPC_0657 IPR003834 Cytochrome C biogenesis protein, transmembrane domain YPC_0657 IPR035671 DsbD gamma YPC_0657 IPR022910 Thiol:disulphide interchange protein DsbD YPC_0657 IPR013766 Thioredoxin domain YPC_0657 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily YPC_0657 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain YPC_0658 IPR009010 Aspartate decarboxylase-like domain superfamily YPC_0658 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPC_0658 IPR041925 Formate dehydrogenase H, molybdopterin-binding domain YPC_0658 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPC_0658 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPC_0658 IPR006656 Molybdopterin oxidoreductase YPC_0658 IPR041924 Formate dehydrogenase H, N-terminal YPC_0658 IPR006478 Formate dehydrogenase, alpha subunit YPC_0658 IPR006657 Molybdopterin dinucleotide-binding domain YPC_0659 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_0659 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPC_0660 IPR009051 Alpha-helical ferredoxin YPC_0660 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_0660 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPC_0660 IPR028261 Dihydroprymidine dehydrogenase domain II YPC_0660 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_0660 IPR023753 FAD/NAD(P)-binding domain YPC_0660 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 YPC_0661 IPR009057 Homeobox-like domain superfamily YPC_0661 IPR001647 DNA-binding HTH domain, TetR-type YPC_0661 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPC_0665 IPR008992 Enterotoxin YPC_0666 IPR005063 Transposase, IS1 YPC_0668 IPR004673 L-rhamnose-proton symport, RhaT YPC_0670 IPR003313 AraC-type arabinose-binding/dimerisation domain YPC_0670 IPR009057 Homeobox-like domain superfamily YPC_0670 IPR018060 DNA binding HTH domain, AraC-type YPC_0670 IPR023699 Transcription activator HTH, RhaR YPC_0670 IPR011051 RmlC-like cupin domain superfamily YPC_0670 IPR020449 Transcription regulator HTH, AraC- type YPC_0670 IPR018062 HTH domain AraC-type, conserved site YPC_0670 IPR014710 RmlC-like jelly roll fold YPC_0672 IPR020449 Transcription regulator HTH, AraC- type YPC_0672 IPR003313 AraC-type arabinose-binding/dimerisation domain YPC_0672 IPR014710 RmlC-like jelly roll fold YPC_0672 IPR018060 DNA binding HTH domain, AraC-type YPC_0672 IPR023609 Transcription regulator HTH, RhaS YPC_0672 IPR037923 Transcription regulator HTH-like YPC_0672 IPR009057 Homeobox-like domain superfamily YPC_0674 IPR000577 Carbohydrate kinase, FGGY YPC_0674 IPR013449 Rhamnulokinase YPC_0674 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPC_0674 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPC_0675 IPR009308 Rhamnose isomerase YPC_0675 IPR036237 Xylose isomerase-like superfamily YPC_0676 IPR001303 Class II aldolase/adducin N-terminal YPC_0676 IPR013447 Rhamnulose-1-phosphate aldolase YPC_0676 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPC_0677 IPR039697 Iron-type alcohol dehydrogenase-like YPC_0677 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPC_0677 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YPC_0678 IPR011008 Dimeric alpha-beta barrel YPC_0678 IPR013448 L-rhamnose mutarotase YPC_0678 IPR008000 Rhamnose/fucose mutarotase YPC_0679 IPR012340 Nucleic acid-binding, OB-fold YPC_0679 IPR000424 Primosome PriB/single-strand DNA-binding YPC_0679 IPR011344 Single-stranded DNA-binding protein YPC_0680 IPR041102 UvrA, interaction domain YPC_0680 IPR004602 UvrABC system subunit A YPC_0680 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0680 IPR017871 ABC transporter, conserved site YPC_0680 IPR003439 ABC transporter-like YPC_0680 IPR041552 UvrA DNA-binding domain YPC_0681 IPR038056 YjbR-like superfamily YPC_0681 IPR007351 Uncharacterised protein YjbR YPC_0682 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_0682 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YPC_0682 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_0682 IPR000796 Aspartate/other aminotransferase YPC_0682 IPR004839 Aminotransferase, class I/classII YPC_0682 IPR015424 Pyridoxal phosphate-dependent transferase YPC_0683 IPR011079 Alanine racemase, C-terminal YPC_0683 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site YPC_0683 IPR001608 Alanine racemase, N-terminal YPC_0683 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPC_0683 IPR000821 Alanine racemase YPC_0683 IPR029066 PLP-binding barrel YPC_0684 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily YPC_0684 IPR003593 AAA+ ATPase domain YPC_0684 IPR007692 DNA helicase, DnaB type YPC_0684 IPR007694 DNA helicase, DnaB-like, C-terminal YPC_0684 IPR007693 DNA helicase, DnaB-like, N-terminal YPC_0684 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YPC_0684 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0685 IPR013154 Alcohol dehydrogenase, N-terminal YPC_0685 IPR013149 Alcohol dehydrogenase, C-terminal YPC_0685 IPR011032 GroES-like superfamily YPC_0685 IPR036291 NAD(P)-binding domain superfamily YPC_0685 IPR020843 Polyketide synthase, enoylreductase domain YPC_0685 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site YPC_0687 IPR014318 Phage shock protein, PspG YPC_0688 IPR004653 tRNA-dihydrouridine(20/20a) synthase YPC_0688 IPR013785 Aldolase-type TIM barrel YPC_0688 IPR035587 DUS-like, FMN-binding domain YPC_0688 IPR018517 tRNA-dihydrouridine synthase, conserved site YPC_0688 IPR001269 tRNA-dihydrouridine synthase YPC_0689 IPR036390 Winged helix DNA-binding domain superfamily YPC_0689 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0689 IPR002481 Ferric-uptake regulator YPC_0690 IPR036390 Winged helix DNA-binding domain superfamily YPC_0690 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0690 IPR015927 Peptidase S24/S26A/S26B/S26C YPC_0690 IPR006197 Peptidase S24, LexA-like YPC_0690 IPR006200 Transcription regulator LexA YPC_0690 IPR039418 LexA-like YPC_0690 IPR006199 LexA repressor, DNA-binding domain YPC_0690 IPR036286 LexA/Signal peptidase-like superfamily YPC_0691 IPR036945 Diacylglycerol kinase (DAGK) superfamily YPC_0691 IPR000829 DAGK family YPC_0691 IPR033718 Diacylglycerol kinase, prokaryotic YPC_0692 IPR002123 Phospholipid/glycerol acyltransferase YPC_0692 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase YPC_0692 IPR041728 GPAT/DHAPAT, acyltransferase domain YPC_0692 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB YPC_0693 IPR030470 UbiA prenyltransferase conserved site YPC_0693 IPR039653 Prenyltransferase YPC_0693 IPR006370 4-hydroxybenzoate polyprenyltransferase-like YPC_0693 IPR000537 UbiA prenyltransferase family YPC_0694 IPR007440 Chorismate--pyruvate lyase YPC_0694 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPC_0695 IPR011050 Pectin lyase fold/virulence factor YPC_0695 IPR005546 Autotransporter beta-domain YPC_0695 IPR036709 Autotransporter beta-domain superfamily YPC_0695 IPR013425 Autotransporter-associated beta strand repeat YPC_0695 IPR006315 Outer membrane autotransporter barrel YPC_0695 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPC_0697 IPR036318 FAD-binding, type PCMH-like superfamily YPC_0697 IPR012951 Berberine/berberine-like YPC_0697 IPR016166 FAD-binding domain, PCMH-type YPC_0697 IPR006094 FAD linked oxidase, N-terminal YPC_0697 IPR006311 Twin-arginine translocation pathway, signal sequence YPC_0702 IPR016147 Pili assembly chaperone, N-terminal YPC_0702 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPC_0702 IPR013783 Immunoglobulin-like fold YPC_0702 IPR008962 PapD-like superfamily YPC_0703 IPR025885 PapC, N-terminal domain YPC_0703 IPR037224 PapC, N-terminal domain superfamily YPC_0703 IPR025949 PapC-like, C-terminal domain YPC_0703 IPR042186 Outer membrane usher protein FimD, plug domain YPC_0703 IPR000015 Outer membrane usher protein YPC_0705 IPR003325 TerD domain YPC_0706 IPR003325 TerD domain YPC_0707 IPR005496 Integral membrane protein TerC YPC_0707 IPR022369 Integral membrane protein TerC, riboswitch-linked YPC_0708 IPR007791 Co-chaperone DjlA, N-terminal YPC_0708 IPR029024 TerB-like YPC_0709 IPR017115 Tellurite resistance, TerA YPC_0709 IPR003325 TerD domain YPC_0710 IPR003325 TerD domain YPC_0714 IPR028157 PELOTA RNA-binding domain YPC_0714 IPR011215 Phosphoribosyl transferase YPC_0716 IPR011233 Tellurite/Phi/PacB toxicity protection, TerW YPC_0718 IPR006638 Elp3/MiaB/NifB YPC_0718 IPR034505 Anaerobic coproporphyrinogen-III oxidase YPC_0718 IPR026332 Anaerobilin synthase HutW YPC_0718 IPR007197 Radical SAM YPC_0718 IPR023404 Radical SAM, alpha/beta horseshoe YPC_0719 IPR010413 Intracellular heme transport protein HutX-like YPC_0720 IPR036291 NAD(P)-binding domain superfamily YPC_0720 IPR016040 NAD(P)-binding domain YPC_0722 IPR019600 Hemin uptake protein HemP YPC_0723 IPR037066 TonB-dependent receptor, plug domain superfamily YPC_0723 IPR000531 TonB-dependent receptor-like, beta-barrel YPC_0723 IPR012910 TonB-dependent receptor, plug domain YPC_0723 IPR011276 TonB-dependent haem/haemoglobin receptor YPC_0723 IPR039426 Vitamin B12 transporter BtuB-like YPC_0723 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor YPC_0723 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPC_0723 IPR010916 TonB box, conserved site YPC_0724 IPR007845 Haemin-degrading HemS/ChuX domain YPC_0725 IPR002491 ABC transporter periplasmic binding domain YPC_0726 IPR000522 ABC transporter, permease protein, BtuC-like YPC_0726 IPR037294 ABC transporter, BtuC-like YPC_0727 IPR003439 ABC transporter-like YPC_0727 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0727 IPR015863 ABC transporter, hemin import, HmuV YPC_0727 IPR003593 AAA+ ATPase domain YPC_0727 IPR017871 ABC transporter, conserved site YPC_0728 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPC_0728 IPR006233 Cystathionine beta-lyase, bacterial YPC_0728 IPR015424 Pyridoxal phosphate-dependent transferase YPC_0728 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_0728 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_0729 IPR018227 Amino acid/polyamine transporter 2 YPC_0730 IPR036390 Winged helix DNA-binding domain superfamily YPC_0730 IPR005119 LysR, substrate-binding YPC_0730 IPR000847 Transcription regulator HTH, LysR YPC_0730 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0731 IPR036868 TusA-like domain superfamily YPC_0731 IPR001455 TusA-like domain YPC_0732 IPR007272 Sulphur transport domain YPC_0738 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPC_0738 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO YPC_0738 IPR001543 Surface presentation of antigen (SpoA) YPC_0738 IPR036429 SpoA-like superfamily YPC_0741 IPR005714 ATPase, type III secretion system, FliI/YscN YPC_0741 IPR003593 AAA+ ATPase domain YPC_0741 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPC_0741 IPR013380 ATPase, type III secretion system, H+-transporting YPC_0741 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0741 IPR040627 T3SS EscN ATPase, C-terminal YPC_0742 IPR001712 Type III secretion system FHIPEP YPC_0742 IPR025505 FHIPEP conserved site YPC_0742 IPR042196 FHIPEP, domain 4 YPC_0742 IPR042193 FHIPEP, domain 3 YPC_0742 IPR006302 Type III secretion protein HrcV YPC_0745 IPR006182 Secretory protein YscJ/FliF YPC_0745 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ YPC_0749 IPR018062 HTH domain AraC-type, conserved site YPC_0749 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like YPC_0749 IPR009057 Homeobox-like domain superfamily YPC_0749 IPR018060 DNA binding HTH domain, AraC-type YPC_0754 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_0754 IPR001789 Signal transduction response regulator, receiver domain YPC_0754 IPR036641 HPT domain superfamily YPC_0754 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPC_0754 IPR003660 HAMP domain YPC_0754 IPR011006 CheY-like superfamily YPC_0754 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_0754 IPR003594 Histidine kinase/HSP90-like ATPase YPC_0754 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_0754 IPR005467 Histidine kinase domain YPC_0754 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_0754 IPR019247 Histidine kinase BarA, N-terminal YPC_0755 IPR011006 CheY-like superfamily YPC_0755 IPR016032 Signal transduction response regulator, C-terminal effector YPC_0755 IPR001789 Signal transduction response regulator, receiver domain YPC_0755 IPR000792 Transcription regulator LuxR, C-terminal YPC_0756 IPR034703 Proton/glutamate-aspartate symporter GltP YPC_0756 IPR036458 Sodium:dicarboxylate symporter superfamily YPC_0756 IPR018107 Sodium:dicarboxylate symporter, conserved site YPC_0756 IPR001991 Sodium:dicarboxylate symporter YPC_0756 IPR033380 Glutamate-aspartate symport protein GltP/GltT YPC_0757 IPR011904 Acetate-CoA ligase YPC_0757 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain YPC_0757 IPR025110 AMP-binding enzyme, C-terminal domain YPC_0757 IPR020845 AMP-binding, conserved site YPC_0757 IPR000873 AMP-dependent synthetase/ligase YPC_0757 IPR042099 AMP-dependent synthetase-like superfamily YPC_0758 IPR007436 Protein of unknown function DUF485 YPC_0759 IPR014083 Cation/acetate symporter ActP YPC_0759 IPR018212 Sodium/solute symporter, conserved site YPC_0759 IPR001734 Sodium/solute symporter YPC_0759 IPR038377 Sodium/glucose symporter superfamily YPC_0761 IPR036397 Ribonuclease H superfamily YPC_0761 IPR017894 HTH domain, IS21 transposase-type YPC_0761 IPR001584 Integrase, catalytic core YPC_0761 IPR006120 Resolvase, HTH domain YPC_0761 IPR012337 Ribonuclease H-like superfamily YPC_0762 IPR002611 IstB-like ATP-binding protein YPC_0762 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0762 IPR001270 ClpA/B family YPC_0762 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_0762 IPR003593 AAA+ ATPase domain YPC_0763 IPR009081 Phosphopantetheine binding ACP domain YPC_0763 IPR020845 AMP-binding, conserved site YPC_0763 IPR036736 ACP-like superfamily YPC_0763 IPR010071 Amino acid adenylation domain YPC_0763 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPC_0763 IPR001242 Condensation domain YPC_0763 IPR013217 Methyltransferase type 12 YPC_0763 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPC_0763 IPR042099 AMP-dependent synthetase-like superfamily YPC_0763 IPR006162 Phosphopantetheine attachment site YPC_0763 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_0763 IPR000873 AMP-dependent synthetase/ligase YPC_0764 IPR013217 Methyltransferase type 12 YPC_0764 IPR036736 ACP-like superfamily YPC_0764 IPR020845 AMP-binding, conserved site YPC_0764 IPR000873 AMP-dependent synthetase/ligase YPC_0764 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPC_0764 IPR042099 AMP-dependent synthetase-like superfamily YPC_0764 IPR010071 Amino acid adenylation domain YPC_0764 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPC_0764 IPR001242 Condensation domain YPC_0764 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_0764 IPR006162 Phosphopantetheine attachment site YPC_0764 IPR009081 Phosphopantetheine binding ACP domain YPC_0765 IPR009081 Phosphopantetheine binding ACP domain YPC_0765 IPR001242 Condensation domain YPC_0765 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPC_0765 IPR042099 AMP-dependent synthetase-like superfamily YPC_0765 IPR000873 AMP-dependent synthetase/ligase YPC_0765 IPR020845 AMP-binding, conserved site YPC_0765 IPR025110 AMP-binding enzyme, C-terminal domain YPC_0765 IPR036736 ACP-like superfamily YPC_0765 IPR010071 Amino acid adenylation domain YPC_0766 IPR006162 Phosphopantetheine attachment site YPC_0766 IPR009081 Phosphopantetheine binding ACP domain YPC_0766 IPR025110 AMP-binding enzyme, C-terminal domain YPC_0766 IPR010060 Non-ribosomal peptide synthase YPC_0766 IPR001242 Condensation domain YPC_0766 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPC_0766 IPR042099 AMP-dependent synthetase-like superfamily YPC_0766 IPR000873 AMP-dependent synthetase/ligase YPC_0766 IPR020845 AMP-binding, conserved site YPC_0766 IPR036736 ACP-like superfamily YPC_0766 IPR010071 Amino acid adenylation domain YPC_0766 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPC_0767 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPC_0767 IPR042099 AMP-dependent synthetase-like superfamily YPC_0767 IPR001242 Condensation domain YPC_0767 IPR013217 Methyltransferase type 12 YPC_0767 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_0767 IPR009081 Phosphopantetheine binding ACP domain YPC_0767 IPR006162 Phosphopantetheine attachment site YPC_0767 IPR036736 ACP-like superfamily YPC_0767 IPR010071 Amino acid adenylation domain YPC_0767 IPR020845 AMP-binding, conserved site YPC_0767 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPC_0767 IPR000873 AMP-dependent synthetase/ligase YPC_0772 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_0772 IPR001031 Thioesterase YPC_0772 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS YPC_0772 IPR020802 Polyketide synthase, thioesterase domain YPC_0772 IPR029058 Alpha/Beta hydrolase fold YPC_0774 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPC_0774 IPR007037 Siderophore-interacting protein, C-terminal domain YPC_0774 IPR017938 Riboflavin synthase-like beta-barrel YPC_0774 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0774 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPC_0774 IPR017927 FAD-binding domain, ferredoxin reductase-type YPC_0774 IPR013113 FAD-binding 9, siderophore-interacting YPC_0774 IPR017871 ABC transporter, conserved site YPC_0774 IPR003439 ABC transporter-like YPC_0774 IPR011527 ABC transporter type 1, transmembrane domain YPC_0774 IPR003593 AAA+ ATPase domain YPC_0775 IPR011527 ABC transporter type 1, transmembrane domain YPC_0775 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0775 IPR011917 ABC transporter, lipid A export, MsbA YPC_0775 IPR017871 ABC transporter, conserved site YPC_0775 IPR003439 ABC transporter-like YPC_0775 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPC_0775 IPR003593 AAA+ ATPase domain YPC_0775 IPR039421 Type I protein exporter YPC_0779 IPR003474 Gluconate transporter YPC_0784 IPR005546 Autotransporter beta-domain YPC_0784 IPR011050 Pectin lyase fold/virulence factor YPC_0784 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPC_0784 IPR006315 Outer membrane autotransporter barrel YPC_0784 IPR013425 Autotransporter-associated beta strand repeat YPC_0784 IPR036709 Autotransporter beta-domain superfamily YPC_0785 IPR037026 Vgr protein, OB-fold domain superfamily YPC_0785 IPR006531 Gp5 N-terminal YPC_0785 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPC_0785 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPC_0787 IPR031325 RHS repeat YPC_0787 IPR006530 YD repeat YPC_0787 IPR001826 RHS protein YPC_0787 IPR022385 Rhs repeat-associated core YPC_0792 IPR031312 Sodium/sulphate symporter, conserved site YPC_0792 IPR001898 Solute carrier family 13 YPC_0793 IPR000843 LacI-type HTH domain YPC_0793 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_0793 IPR028082 Periplasmic binding protein-like I YPC_0795 IPR036397 Ribonuclease H superfamily YPC_0795 IPR025948 HTH-like domain YPC_0795 IPR038965 Transposase InsF-like YPC_0795 IPR001584 Integrase, catalytic core YPC_0795 IPR012337 Ribonuclease H-like superfamily YPC_0797 IPR039672 Lactose permease-like YPC_0797 IPR020846 Major facilitator superfamily domain YPC_0797 IPR018043 Sodium:galactoside symporter, conserved site YPC_0797 IPR001927 Sodium:galactoside symporter YPC_0797 IPR036259 MFS transporter superfamily YPC_0798 IPR039426 Vitamin B12 transporter BtuB-like YPC_0798 IPR012910 TonB-dependent receptor, plug domain YPC_0798 IPR037066 TonB-dependent receptor, plug domain superfamily YPC_0798 IPR000531 TonB-dependent receptor-like, beta-barrel YPC_0798 IPR010916 TonB box, conserved site YPC_0798 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPC_0798 IPR010917 TonB-dependent receptor, conserved site YPC_0798 IPR010105 TonB-dependent siderophore receptor YPC_0799 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YPC_0799 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_0800 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPC_0800 IPR022770 Ferric iron reductase FhuF domain YPC_0800 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPC_0801 IPR016181 Acyl-CoA N-acyltransferase YPC_0801 IPR019432 Siderophore biosynthesis protein, conserved domain YPC_0802 IPR022770 Ferric iron reductase FhuF domain YPC_0802 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPC_0802 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPC_0803 IPR022770 Ferric iron reductase FhuF domain YPC_0803 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPC_0803 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPC_0810 IPR016032 Signal transduction response regulator, C-terminal effector YPC_0810 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0810 IPR000792 Transcription regulator LuxR, C-terminal YPC_0810 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YPC_0810 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YPC_0811 IPR001690 Autoinducer synthase YPC_0811 IPR018311 Autoinducer synthesis, conserved site YPC_0811 IPR016181 Acyl-CoA N-acyltransferase YPC_0812 IPR003675 CAAX prenyl protease 2 YPC_0815 IPR003220 InsA N-terminal domain YPC_0815 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YPC_0822 IPR028974 TSP type-3 repeat YPC_0822 IPR006690 Outer membrane protein, OmpA-like, conserved site YPC_0822 IPR006665 OmpA-like domain YPC_0822 IPR008722 Outer membrane porin F, N-terminal YPC_0822 IPR036737 OmpA-like domain superfamily YPC_0822 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPC_0822 IPR006664 Outer membrane protein, bacterial YPC_0824 IPR001270 ClpA/B family YPC_0824 IPR003593 AAA+ ATPase domain YPC_0824 IPR003959 ATPase, AAA-type, core YPC_0824 IPR017729 Type VI secretion system, ATPase ClpV1 YPC_0824 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0824 IPR041546 ClpA/ClpB, AAA lid domain YPC_0824 IPR018368 ClpA/B, conserved site 1 YPC_0824 IPR019489 Clp ATPase, C-terminal YPC_0824 IPR004176 Clp, N-terminal YPC_0824 IPR036628 Clp, N-terminal domain superfamily YPC_0828 IPR003220 InsA N-terminal domain YPC_0828 IPR009057 Homeobox-like domain superfamily YPC_0828 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YPC_0833 IPR003220 InsA N-terminal domain YPC_0833 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YPC_0833 IPR009057 Homeobox-like domain superfamily YPC_0834 IPR005063 Transposase, IS1 YPC_0836 IPR002104 Integrase, catalytic domain YPC_0836 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPC_0836 IPR013762 Integrase-like, catalytic domain superfamily YPC_0836 IPR004107 Integrase, SAM-like, N-terminal YPC_0836 IPR010998 Integrase/recombinase, N-terminal YPC_0839 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal YPC_0839 IPR015424 Pyridoxal phosphate-dependent transferase YPC_0839 IPR011193 Ornithine/lysine/arginine decarboxylase YPC_0839 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily YPC_0839 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal YPC_0839 IPR000310 Orn/Lys/Arg decarboxylase, major domain YPC_0839 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_0839 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_0839 IPR027464 Ornithine decarboxylase, N-terminal YPC_0839 IPR011006 CheY-like superfamily YPC_0840 IPR028082 Periplasmic binding protein-like I YPC_0840 IPR025997 Periplasmic binding protein YPC_0841 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0841 IPR015861 ABC transporter, ribose import, RbsA YPC_0841 IPR003593 AAA+ ATPase domain YPC_0841 IPR003439 ABC transporter-like YPC_0841 IPR017871 ABC transporter, conserved site YPC_0842 IPR001851 ABC transporter, permease YPC_0843 IPR039423 TonB-dependent receptor-like YPC_0843 IPR037066 TonB-dependent receptor, plug domain superfamily YPC_0843 IPR012910 TonB-dependent receptor, plug domain YPC_0845 IPR023664 Murein transglycosylase-C YPC_0845 IPR008258 Transglycosylase SLT domain 1 YPC_0845 IPR000189 Prokaryotic transglycosylase, active site YPC_0845 IPR024570 Murein transglycosylase-C, N-terminal YPC_0845 IPR023346 Lysozyme-like domain superfamily YPC_0846 IPR007457 Fe(II) trafficking protein YggX YPC_0846 IPR036766 Fe(II) trafficking protein YggX superfamily YPC_0847 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif YPC_0847 IPR000445 Helix-hairpin-helix motif YPC_0847 IPR005760 A/G-specific adenine glycosylase MutY YPC_0847 IPR011257 DNA glycosylase YPC_0847 IPR004035 Endonuclease III, iron-sulphur binding site YPC_0847 IPR003265 HhH-GPD domain YPC_0847 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal YPC_0847 IPR029119 MutY, C-terminal YPC_0847 IPR015797 NUDIX hydrolase-like domain superfamily YPC_0847 IPR004036 Endonuclease III-like, conserved site-2 YPC_0848 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type YPC_0848 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_0849 IPR007416 Protein of unknown function DUF469 YPC_0850 IPR012338 Beta-lactamase/transpeptidase-like YPC_0850 IPR015868 Glutaminase YPC_0853 IPR011509 RtxA toxin YPC_0853 IPR011049 Serralysin-like metalloprotease, C-terminal YPC_0853 IPR020974 CGT/MARTX, cysteine protease (CPD) domain YPC_0853 IPR020972 Dermonecrotic/RTX toxin, membrane localization domain YPC_0853 IPR022742 Serine aminopeptidase, S33 YPC_0853 IPR032074 Actin cross-linking domain YPC_0853 IPR029058 Alpha/Beta hydrolase fold YPC_0853 IPR038383 CGT/MARTX, cysteine protease (CPD) domain superfamily YPC_0854 IPR023404 Radical SAM, alpha/beta horseshoe YPC_0854 IPR010723 HemN, C-terminal YPC_0854 IPR006638 Elp3/MiaB/NifB YPC_0854 IPR034505 Anaerobic coproporphyrinogen-III oxidase YPC_0854 IPR004559 Heme chaperone HemW-like YPC_0854 IPR007197 Radical SAM YPC_0855 IPR029001 Inosine triphosphate pyrophosphatase-like YPC_0855 IPR002637 Ham1-like protein YPC_0855 IPR020922 dITP/XTP pyrophosphatase YPC_0856 IPR036591 YggU-like superfamily YPC_0856 IPR003746 Protein of unknown function DUF167 YPC_0856 IPR005228 Conserved hypothetical protein CHP00251 YPC_0857 IPR003425 CCB3/YggT YPC_0858 IPR000304 Pyrroline-5-carboxylate reductase YPC_0858 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPC_0858 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal YPC_0858 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain YPC_0858 IPR036291 NAD(P)-binding domain superfamily YPC_0859 IPR011078 Pyridoxal phosphate homeostasis protein YPC_0859 IPR029066 PLP-binding barrel YPC_0859 IPR001608 Alanine racemase, N-terminal YPC_0860 IPR001482 Type II/IV secretion system protein YPC_0860 IPR006321 Pilus retraction protein PilT YPC_0860 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0860 IPR003593 AAA+ ATPase domain YPC_0861 IPR017754 Agmatine deiminase YPC_0861 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type YPC_0862 IPR003010 Carbon-nitrogen hydrolase YPC_0862 IPR023719 Aliphatic amidase YPC_0862 IPR036526 Carbon-nitrogen hydrolase superfamily YPC_0863 IPR005227 Putative pre-16S rRNA nuclease YPC_0863 IPR037027 YqgF/RNase H-like domain superfamily YPC_0863 IPR006641 YqgF/RNase H-like domain YPC_0863 IPR012337 Ribonuclease H-like superfamily YPC_0864 IPR003774 Protein of unknown function UPF0301 YPC_0865 IPR013815 ATP-grasp fold, subdomain 1 YPC_0865 IPR006284 Glutathione synthetase, prokaryotic YPC_0865 IPR004218 Prokaryotic glutathione synthetase, ATP-binding YPC_0865 IPR004215 Prokaryotic glutathione synthetase, N-terminal YPC_0865 IPR011761 ATP-grasp fold YPC_0865 IPR016185 Pre-ATP-grasp domain superfamily YPC_0866 IPR029028 Alpha/beta knot methyltransferases YPC_0866 IPR015947 PUA-like superfamily YPC_0866 IPR006700 Ribosomal RNA small subunit methyltransferase E YPC_0866 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPC_0869 IPR007346 Endonuclease I YPC_0870 IPR006640 SprT-like YPC_0870 IPR035240 SprT-like, zinc ribbon domain YPC_0870 IPR023483 Uncharacterised protein family SprT YPC_0871 IPR022629 S-adenosylmethionine synthetase, central domain YPC_0871 IPR022636 S-adenosylmethionine synthetase superfamily YPC_0871 IPR002133 S-adenosylmethionine synthetase YPC_0871 IPR022631 S-adenosylmethionine synthetase, conserved site YPC_0871 IPR022628 S-adenosylmethionine synthetase, N-terminal YPC_0871 IPR022630 S-adenosylmethionine synthetase, C-terminal YPC_0873 IPR000183 Ornithine/DAP/Arg decarboxylase YPC_0873 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YPC_0873 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal YPC_0873 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YPC_0873 IPR002985 Arginine decarboxylase YPC_0873 IPR029066 PLP-binding barrel YPC_0873 IPR041128 Arginine decarboxylase, C-terminal helical YPC_0873 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPC_0873 IPR040634 Arginine decarboxylase, helical bundle domain YPC_0874 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily YPC_0874 IPR017941 Rieske [2Fe-2S] iron-sulphur domain YPC_0876 IPR001915 Peptidase M48 YPC_0877 IPR033247 Transketolase family YPC_0877 IPR029061 Thiamin diphosphate-binding fold YPC_0877 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPC_0877 IPR005475 Transketolase-like, pyrimidine-binding domain YPC_0877 IPR005474 Transketolase, N-terminal YPC_0877 IPR005478 Transketolase, bacterial-like YPC_0877 IPR020826 Transketolase binding site YPC_0877 IPR033248 Transketolase, C-terminal domain YPC_0880 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YPC_0880 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YPC_0880 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family YPC_0880 IPR006422 D-erythrose-4-phosphate dehydrogenase YPC_0880 IPR036291 NAD(P)-binding domain superfamily YPC_0880 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site YPC_0881 IPR001576 Phosphoglycerate kinase YPC_0881 IPR015911 Phosphoglycerate kinase, conserved site YPC_0881 IPR036043 Phosphoglycerate kinase superfamily YPC_0881 IPR015824 Phosphoglycerate kinase, N-terminal YPC_0882 IPR013785 Aldolase-type TIM barrel YPC_0882 IPR000771 Fructose-bisphosphate aldolase, class-II YPC_0882 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype YPC_0884 IPR008910 Conserved TM helix YPC_0884 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPC_0884 IPR006686 Mechanosensitive ion channel MscS, conserved site YPC_0884 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPC_0884 IPR006685 Mechanosensitive ion channel MscS YPC_0884 IPR010920 LSM domain superfamily YPC_0884 IPR023408 Mechanosensitive ion channel MscS domain superfamily YPC_0885 IPR023445 Arginine exporter protein ArgO, enterobacteria YPC_0885 IPR001123 Amino acid exporter protein, LeuE-type YPC_0885 IPR004777 L-lysine exporter/arginine exporter YPC_0886 IPR007497 Protein of unknown function DUF541 YPC_0887 IPR000847 Transcription regulator HTH, LysR YPC_0887 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria YPC_0887 IPR005119 LysR, substrate-binding YPC_0887 IPR036390 Winged helix DNA-binding domain superfamily YPC_0887 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0887 IPR017685 HTH-type transcriptional regulator ArgP YPC_0888 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup YPC_0888 IPR037171 NagB/RpiA transferase-like YPC_0888 IPR004788 Ribose 5-phosphate isomerase, type A YPC_0889 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPC_0889 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPC_0889 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPC_0889 IPR036291 NAD(P)-binding domain superfamily YPC_0889 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPC_0889 IPR002912 ACT domain YPC_0891 IPR037171 NagB/RpiA transferase-like YPC_0891 IPR002698 5-formyltetrahydrofolate cyclo-ligase YPC_0891 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily YPC_0893 IPR023771 Cell division protein ZapA, eubacteria YPC_0893 IPR007838 Cell division protein ZapA-like YPC_0893 IPR036192 Cell division protein ZapA-like superfamily YPC_0894 IPR036255 YgfB-like superfamily YPC_0894 IPR011978 Uncharacterised protein family UPF0149 YPC_0895 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPC_0895 IPR001714 Peptidase M24, methionine aminopeptidase YPC_0895 IPR000994 Peptidase M24 YPC_0895 IPR036005 Creatinase/aminopeptidase-like YPC_0895 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPC_0895 IPR007865 Aminopeptidase P, N-terminal YPC_0896 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 YPC_0896 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase YPC_0896 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YPC_0896 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_0896 IPR002938 FAD-binding domain YPC_0897 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YPC_0897 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 YPC_0897 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_0897 IPR002938 FAD-binding domain YPC_0898 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 YPC_0898 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal YPC_0898 IPR006222 Aminomethyltransferase, folate-binding domain YPC_0898 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain YPC_0898 IPR028896 Aminomethyltransferase-like YPC_0898 IPR022903 Glycine cleavage system T protein, bacteria YPC_0898 IPR006223 Glycine cleavage system T protein YPC_0899 IPR033753 Glycine cleavage system H-protein/Simiate YPC_0899 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPC_0899 IPR011053 Single hybrid motif YPC_0899 IPR002930 Glycine cleavage system H-protein YPC_0899 IPR000089 Biotin/lipoyl attachment YPC_0899 IPR017453 Glycine cleavage system H-protein, subgroup YPC_0900 IPR003437 Glycine dehydrogenase (decarboxylating) YPC_0900 IPR020581 Glycine cleavage system P protein YPC_0900 IPR015424 Pyridoxal phosphate-dependent transferase YPC_0900 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_0900 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_0905 IPR011049 Serralysin-like metalloprotease, C-terminal YPC_0905 IPR008640 Head domain of trimeric autotransporter adhesin YPC_0905 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPC_0905 IPR024973 ESPR domain YPC_0905 IPR005594 YadA-like, C-terminal YPC_0907 IPR005744 Hly-III YPC_0907 IPR004254 AdipoR/Haemolysin-III-related YPC_0909 IPR017703 YgfZ/GcvT conserved site YPC_0909 IPR023758 tRNA-modifying protein YgfZ YPC_0909 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal YPC_0909 IPR006222 Aminomethyltransferase, folate-binding domain YPC_0910 IPR036714 Flavinator of succinate dehydrogenase superfamily YPC_0910 IPR005631 Flavinator of succinate dehydrogenase YPC_0911 IPR009883 Inner membrane protein YgfX YPC_0912 IPR001867 OmpR/PhoB-type DNA-binding domain YPC_0912 IPR011006 CheY-like superfamily YPC_0912 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0912 IPR001789 Signal transduction response regulator, receiver domain YPC_0912 IPR016032 Signal transduction response regulator, C-terminal effector YPC_0912 IPR039420 Transcriptional regulatory protein WalR-like YPC_0913 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_0913 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_0913 IPR005467 Histidine kinase domain YPC_0913 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_0913 IPR003594 Histidine kinase/HSP90-like ATPase YPC_0913 IPR003660 HAMP domain YPC_0913 IPR029151 Periplasmic sensor-like domain superfamily YPC_0913 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_0914 IPR010364 Uncharacterised protein family, inner membrane CreD YPC_0915 IPR029039 Flavoprotein-like superfamily YPC_0915 IPR001226 Flavodoxin, conserved site YPC_0915 IPR008254 Flavodoxin/nitric oxide synthase YPC_0915 IPR010086 Flavodoxin, long chain YPC_0916 IPR004107 Integrase, SAM-like, N-terminal YPC_0916 IPR010998 Integrase/recombinase, N-terminal YPC_0916 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPC_0916 IPR013762 Integrase-like, catalytic domain superfamily YPC_0916 IPR002104 Integrase, catalytic domain YPC_0916 IPR023009 Tyrosine recombinase XerC/XerD YPC_0916 IPR011932 Tyrosine recombinase XerD YPC_0917 IPR017937 Thioredoxin, conserved site YPC_0917 IPR036249 Thioredoxin-like superfamily YPC_0917 IPR012336 Thioredoxin-like fold YPC_0917 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily YPC_0917 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal YPC_0917 IPR033954 Disulphide bond isomerase, DsbC/G YPC_0917 IPR013766 Thioredoxin domain YPC_0918 IPR041122 RecJ, OB domain YPC_0918 IPR003156 DHHA1 domain YPC_0918 IPR004610 Bacterial RecJ exonuclease YPC_0918 IPR001667 DDH domain YPC_0918 IPR038763 DHH phosphoesterase superfamily YPC_0920 IPR012340 Nucleic acid-binding, OB-fold YPC_0920 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPC_0920 IPR006195 Aminoacyl-tRNA synthetase, class II YPC_0920 IPR002313 Lysine-tRNA ligase, class II YPC_0920 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPC_0920 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II YPC_0920 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal YPC_0922 IPR025166 Integrase, DNA-binding domain YPC_0922 IPR002104 Integrase, catalytic domain YPC_0922 IPR013762 Integrase-like, catalytic domain superfamily YPC_0922 IPR010998 Integrase/recombinase, N-terminal YPC_0922 IPR004107 Integrase, SAM-like, N-terminal YPC_0922 IPR038488 Integrase, DNA-binding domain superfamily YPC_0922 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPC_0927 IPR031451 mRNA interferase toxin MqsR YPC_0927 IPR038493 Toxin MqsR superfamily YPC_0928 IPR001387 Cro/C1-type helix-turn-helix domain YPC_0928 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_0928 IPR022453 Zinc finger, MqsA-type YPC_0928 IPR022452 Antitoxin MqsA YPC_0928 IPR032758 Antitoxin MqsA/HigA-2 YPC_0948 IPR005149 Transcription regulator PadR, N-terminal YPC_0948 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0948 IPR036390 Winged helix DNA-binding domain superfamily YPC_0951 IPR038765 Papain-like cysteine peptidase superfamily YPC_0951 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPC_0953 IPR028082 Periplasmic binding protein-like I YPC_0953 IPR025997 Periplasmic binding protein YPC_0954 IPR001851 ABC transporter, permease YPC_0955 IPR003439 ABC transporter-like YPC_0955 IPR017871 ABC transporter, conserved site YPC_0955 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0955 IPR003593 AAA+ ATPase domain YPC_0955 IPR015861 ABC transporter, ribose import, RbsA YPC_0956 IPR017871 ABC transporter, conserved site YPC_0956 IPR003593 AAA+ ATPase domain YPC_0956 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0956 IPR003439 ABC transporter-like YPC_0956 IPR040582 MalK, OB fold domain YPC_0956 IPR008995 Molybdate/tungstate binding, C-terminal YPC_0957 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein YPC_0957 IPR006059 Bacterial extracellular solute-binding protein YPC_0958 IPR035906 MetI-like superfamily YPC_0958 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_0959 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_0959 IPR035906 MetI-like superfamily YPC_0960 IPR011683 Glycosyl hydrolase family 53 YPC_0960 IPR017853 Glycoside hydrolase superfamily YPC_0961 IPR013529 Glycoside hydrolase, family 42, N-terminal YPC_0961 IPR017853 Glycoside hydrolase superfamily YPC_0961 IPR013780 Glycosyl hydrolase, all-beta YPC_0961 IPR029062 Class I glutamine amidotransferase-like YPC_0961 IPR003476 Glycoside hydrolase, family 42 YPC_0961 IPR013739 Beta-galactosidase C-terminal YPC_0961 IPR013738 Beta-galactosidase trimerisation YPC_0962 IPR036878 Glucose permease domain IIB YPC_0962 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPC_0962 IPR003352 Phosphotransferase system, EIIC YPC_0962 IPR011299 PTS system glucose-specific IIBC component YPC_0962 IPR013013 Phosphotransferase system, EIIC component, type 1 YPC_0962 IPR001996 Phosphotransferase system, IIB component, type 1 YPC_0963 IPR036998 Porin, LamB-type superfamily YPC_0963 IPR023738 Maltoporin YPC_0963 IPR003192 Porin, LamB-type YPC_0964 IPR000843 LacI-type HTH domain YPC_0964 IPR028082 Periplasmic binding protein-like I YPC_0964 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_0967 IPR033403 Domain of unknown function DUF5110 YPC_0967 IPR011013 Galactose mutarotase-like domain superfamily YPC_0967 IPR000322 Glycoside hydrolase family 31 YPC_0967 IPR030458 Glycosyl hydrolases family 31, active site YPC_0967 IPR030459 Glycosyl hydrolases family 31, conserved site YPC_0967 IPR025887 Glycoside hydrolase family 31, N-terminal domain YPC_0967 IPR013780 Glycosyl hydrolase, all-beta YPC_0967 IPR017853 Glycoside hydrolase superfamily YPC_0967 IPR032513 Alpha-glucosidase, domain of unknown function DUF4968 YPC_0971 IPR023588 Transcription regulator HTH, PurR YPC_0971 IPR000843 LacI-type HTH domain YPC_0971 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_0971 IPR028082 Periplasmic binding protein-like I YPC_0973 IPR023955 D-tagatose-bisphosphate aldolase, class II, subunit GatY YPC_0973 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY YPC_0973 IPR013785 Aldolase-type TIM barrel YPC_0973 IPR000771 Fructose-bisphosphate aldolase, class-II YPC_0976 IPR024607 Sulfatase, conserved site YPC_0976 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPC_0976 IPR000917 Sulfatase, N-terminal YPC_0977 IPR023885 4Fe4S-binding SPASM domain YPC_0977 IPR013785 Aldolase-type TIM barrel YPC_0977 IPR034491 Anaerobic Ser-type sulfatase-maturating enzyme YPC_0977 IPR007197 Radical SAM YPC_0981 IPR006680 Amidohydrolase-related YPC_0981 IPR032466 Metal-dependent hydrolase YPC_0981 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPC_0981 IPR003764 N-acetylglucosamine-6-phosphate deacetylase YPC_0982 IPR004701 Phosphotransferase system, mannose-type IIA component YPC_0982 IPR033887 PTS system mannose/sorbose specific IIA subunit YPC_0982 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily YPC_0985 IPR004720 Phosphotransferase system, sorbose subfamily IIB component YPC_0985 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup YPC_0985 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily YPC_0986 IPR035466 GlmS/AgaS, SIS domain 1 YPC_0986 IPR035464 AgaS, SIS domain YPC_0986 IPR014180 Sugar isomerase, AgaS YPC_0986 IPR001347 Sugar isomerase (SIS) YPC_0987 IPR013785 Aldolase-type TIM barrel YPC_0987 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ-like YPC_0987 IPR023435 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit KbaZ YPC_0988 IPR037171 NagB/RpiA transferase-like YPC_0988 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPC_0988 IPR001034 DeoR-type HTH domain YPC_0988 IPR014036 DeoR C-terminal sensor domain YPC_0988 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_0988 IPR036390 Winged helix DNA-binding domain superfamily YPC_0991 IPR000917 Sulfatase, N-terminal YPC_0991 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPC_0992 IPR002686 Transposase IS200-like YPC_0992 IPR036515 Transposase IS200-like superfamily YPC_0993 IPR001584 Integrase, catalytic core YPC_0993 IPR017894 HTH domain, IS21 transposase-type YPC_0993 IPR006120 Resolvase, HTH domain YPC_0993 IPR036397 Ribonuclease H superfamily YPC_0993 IPR012337 Ribonuclease H-like superfamily YPC_0994 IPR002611 IstB-like ATP-binding protein YPC_0994 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_0994 IPR001270 ClpA/B family YPC_0994 IPR003593 AAA+ ATPase domain YPC_0994 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_0996 IPR011013 Galactose mutarotase-like domain superfamily YPC_0996 IPR015176 Lyase, N-terminal YPC_0996 IPR003159 Polysaccharide lyase family 8, central domain YPC_0996 IPR004103 Polysaccharide lyase family 8, C-terminal YPC_0996 IPR039174 Chondroitin sulfate ABC lyase YPC_0996 IPR015177 Lyase, catalytic YPC_0996 IPR024200 Chondroitin sulfate ABC endolyase YPC_0996 IPR011071 Polysaccharide lyase family 8-like, C-terminal YPC_0996 IPR014718 Glycoside hydrolase-type carbohydrate-binding YPC_0996 IPR008979 Galactose-binding-like domain superfamily YPC_0996 IPR008929 Chondroitin AC/alginate lyase YPC_1002 IPR036874 Carbonic anhydrase superfamily YPC_1002 IPR001765 Carbonic anhydrase YPC_1002 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site YPC_1005 IPR004845 Type II secretion system GspD, conserved site YPC_1005 IPR001775 GspD/PilQ family YPC_1005 IPR038591 NolW-like superfamily YPC_1005 IPR004846 Type II/III secretion system YPC_1005 IPR013356 Type II secretion system GspD YPC_1005 IPR005644 NolW-like YPC_1008 IPR042094 Type II secretion system F domain superfamily YPC_1008 IPR011850 General secretion pathway protein F YPC_1008 IPR001992 Type II secretion system conserved site YPC_1008 IPR003004 GspF/PilC family YPC_1008 IPR018076 Type II secretion system F domain YPC_1009 IPR013545 Type II secretion system protein G YPC_1009 IPR012902 Prokaryotic N-terminal methylation site YPC_1009 IPR000983 Bacterial general secretion pathway protein G-type pilin YPC_1009 IPR010054 General secretion pathway protein G YPC_1011 IPR010052 Type II secretion system protein I YPC_1011 IPR003413 Type II secretion system protein I domain YPC_1011 IPR012902 Prokaryotic N-terminal methylation site YPC_1016 IPR000045 Prepilin type IV endopeptidase, peptidase domain YPC_1016 IPR014032 Peptidase A24A, prepilin type IV, bacterial YPC_1016 IPR010627 Peptidase A24A, N-terminal YPC_1021 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPC_1021 IPR003660 HAMP domain YPC_1021 IPR004090 Chemotaxis methyl-accepting receptor YPC_1021 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPC_1021 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPC_1021 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPC_1024 IPR000847 Transcription regulator HTH, LysR YPC_1024 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1024 IPR036390 Winged helix DNA-binding domain superfamily YPC_1024 IPR005119 LysR, substrate-binding YPC_1025 IPR020846 Major facilitator superfamily domain YPC_1025 IPR036259 MFS transporter superfamily YPC_1025 IPR011701 Major facilitator superfamily YPC_1026 IPR000847 Transcription regulator HTH, LysR YPC_1026 IPR036390 Winged helix DNA-binding domain superfamily YPC_1026 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1026 IPR005119 LysR, substrate-binding YPC_1026 IPR037414 Transcriptional activator protein LysR, PBP2 domain YPC_1027 IPR002986 Diaminopimelate decarboxylase, LysA YPC_1027 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal YPC_1027 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPC_1027 IPR000183 Ornithine/DAP/Arg decarboxylase YPC_1027 IPR029066 PLP-binding barrel YPC_1027 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YPC_1027 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal YPC_1027 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YPC_1028 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_1028 IPR028082 Periplasmic binding protein-like I YPC_1028 IPR000843 LacI-type HTH domain YPC_1029 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPC_1029 IPR006656 Molybdopterin oxidoreductase YPC_1029 IPR009010 Aspartate decarboxylase-like domain superfamily YPC_1029 IPR006657 Molybdopterin dinucleotide-binding domain YPC_1029 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase YPC_1033 IPR023727 Lysophospholipid transporter LplT YPC_1033 IPR011701 Major facilitator superfamily YPC_1033 IPR036259 MFS transporter superfamily YPC_1037 IPR036812 NADP-dependent oxidoreductase domain superfamily YPC_1037 IPR023210 NADP-dependent oxidoreductase domain YPC_1037 IPR020471 Aldo/keto reductase YPC_1039 IPR011335 Restriction endonuclease type II-like YPC_1039 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily YPC_1039 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II YPC_1039 IPR004230 DNA mismatch repair protein MutH YPC_1040 IPR000086 NUDIX hydrolase domain YPC_1040 IPR020084 NUDIX hydrolase, conserved site YPC_1040 IPR022927 RNA pyrophosphohydrolase RppH YPC_1040 IPR020476 NUDIX hydrolase YPC_1040 IPR015797 NUDIX hydrolase-like domain superfamily YPC_1041 IPR006318 Phosphotransferase system, enzyme I-like YPC_1041 IPR023151 PEP-utilising enzyme, conserved site YPC_1041 IPR036637 Phosphohistidine domain superfamily YPC_1041 IPR008731 Phosphotransferase system, enzyme I N-terminal YPC_1041 IPR018274 PEP-utilising enzyme, active site YPC_1041 IPR008279 PEP-utilising enzyme, mobile domain YPC_1041 IPR040442 Pyruvate kinase-like domain superfamily YPC_1041 IPR029016 GAF-like domain superfamily YPC_1041 IPR003018 GAF domain YPC_1041 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPC_1041 IPR036618 PtsI, HPr-binding domain superfamily YPC_1041 IPR000121 PEP-utilising enzyme, C-terminal YPC_1042 IPR003018 GAF domain YPC_1042 IPR018274 PEP-utilising enzyme, active site YPC_1042 IPR023151 PEP-utilising enzyme, conserved site YPC_1042 IPR000121 PEP-utilising enzyme, C-terminal YPC_1042 IPR008279 PEP-utilising enzyme, mobile domain YPC_1042 IPR036637 Phosphohistidine domain superfamily YPC_1042 IPR006318 Phosphotransferase system, enzyme I-like YPC_1042 IPR036618 PtsI, HPr-binding domain superfamily YPC_1042 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPC_1042 IPR008731 Phosphotransferase system, enzyme I N-terminal YPC_1042 IPR029016 GAF-like domain superfamily YPC_1042 IPR040442 Pyruvate kinase-like domain superfamily YPC_1043 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt YPC_1044 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain YPC_1044 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily YPC_1044 IPR000398 Thymidylate synthase YPC_1044 IPR020940 Thymidylate synthase, active site YPC_1049 IPR011335 Restriction endonuclease type II-like YPC_1049 IPR041500 RecC, C-terminal YPC_1049 IPR006697 RecBCD enzyme subunit RecC YPC_1049 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1049 IPR013986 DExx box DNA helicase domain superfamily YPC_1050 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPC_1050 IPR001431 Peptidase M16, zinc-binding site YPC_1050 IPR032632 Peptidase M16, middle/third domain YPC_1050 IPR011765 Peptidase M16, N-terminal YPC_1050 IPR007863 Peptidase M16, C-terminal YPC_1053 IPR010167 Amino-acid N-acetyltransferase YPC_1053 IPR036393 Acetylglutamate kinase-like superfamily YPC_1053 IPR016181 Acyl-CoA N-acyltransferase YPC_1053 IPR001048 Aspartate/glutamate/uridylate kinase YPC_1053 IPR000182 GNAT domain YPC_1053 IPR033719 N-acetylglutamate synthase, kinase-like domain YPC_1054 IPR021731 AMIN domain YPC_1054 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain YPC_1054 IPR006311 Twin-arginine translocation pathway, signal sequence YPC_1057 IPR034654 MltA, 3D domain YPC_1057 IPR036908 RlpA-like domain superfamily YPC_1057 IPR005300 Lytic transglycosylase MltA, domain B YPC_1057 IPR026044 Membrane-bound lytic murein transglycosylase A YPC_1057 IPR010611 3D domain YPC_1058 IPR000594 THIF-type NAD/FAD binding fold YPC_1058 IPR035985 Ubiquitin-activating enzyme YPC_1059 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE YPC_1059 IPR003808 Fe-S metabolism associated domain, SufE-like YPC_1060 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_1060 IPR015424 Pyridoxal phosphate-dependent transferase YPC_1060 IPR000192 Aminotransferase class V domain YPC_1060 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA YPC_1060 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_1060 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPC_1063 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1063 IPR005119 LysR, substrate-binding YPC_1063 IPR000847 Transcription regulator HTH, LysR YPC_1063 IPR036390 Winged helix DNA-binding domain superfamily YPC_1064 IPR006696 Protein of unknown function DUF423 YPC_1065 IPR011224 Ribosomal RNA large subunit methyltransferase M YPC_1065 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_1065 IPR002877 Ribosomal RNA methyltransferase FtsJ domain YPC_1065 IPR040739 RlmM ferredoxin-like domain YPC_1066 IPR002421 5'-3' exonuclease, N-terminal YPC_1066 IPR029060 PIN-like domain superfamily YPC_1066 IPR008918 Helix-hairpin-helix motif, class 2 YPC_1066 IPR038969 Flap endonuclease YPC_1066 IPR022895 Flap endonuclease Xni YPC_1066 IPR020045 DNA polymerase I-like, H3TH domain YPC_1066 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPC_1066 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPC_1067 IPR021826 Domain of unknown function DUF3412 YPC_1067 IPR031100 LOG family YPC_1067 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily YPC_1067 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal YPC_1068 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal YPC_1068 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF YPC_1068 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 YPC_1069 IPR009948 Syd YPC_1069 IPR038228 Syd superfamily YPC_1071 IPR002686 Transposase IS200-like YPC_1071 IPR036515 Transposase IS200-like superfamily YPC_1072 IPR036814 YqcC-like superfamily YPC_1072 IPR007384 Protein of unknown function UCP006257 YPC_1072 IPR023376 YqcC-like domain YPC_1073 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPC_1073 IPR006145 Pseudouridine synthase, RsuA/RluA YPC_1073 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPC_1074 IPR029039 Flavoprotein-like superfamily YPC_1074 IPR008254 Flavodoxin/nitric oxide synthase YPC_1074 IPR001094 Flavodoxin-like YPC_1075 IPR020911 Uncharacterised protein family UPF0325 YPC_1079 IPR011004 Trimeric LpxA-like superfamily YPC_1079 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily YPC_1079 IPR001451 Hexapeptide repeat YPC_1079 IPR018357 Hexapeptide transferase, conserved site YPC_1079 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 YPC_1079 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family YPC_1080 IPR006674 HD domain YPC_1080 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YPC_1080 IPR002934 Polymerase, nucleotidyl transferase domain YPC_1080 IPR002912 ACT domain YPC_1080 IPR003607 HD/PDEase domain YPC_1080 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme YPC_1081 IPR001714 Peptidase M24, methionine aminopeptidase YPC_1081 IPR036005 Creatinase/aminopeptidase-like YPC_1081 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 YPC_1081 IPR000994 Peptidase M24 YPC_1083 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid YPC_1083 IPR001865 Ribosomal protein S2 YPC_1083 IPR018130 Ribosomal protein S2, conserved site YPC_1083 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily YPC_1084 IPR036402 Elongation factor Ts, dimerisation domain superfamily YPC_1084 IPR009060 UBA-like superfamily YPC_1084 IPR018101 Translation elongation factor Ts, conserved site YPC_1084 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation YPC_1084 IPR001816 Translation elongation factor EFTs/EF1B YPC_1085 IPR015963 Uridylate kinase, bacteria YPC_1085 IPR011817 Uridylate kinase YPC_1085 IPR001048 Aspartate/glutamate/uridylate kinase YPC_1085 IPR036393 Acetylglutamate kinase-like superfamily YPC_1086 IPR023584 Ribosome recycling factor domain YPC_1086 IPR002661 Ribosome recycling factor YPC_1086 IPR036191 RRF superfamily YPC_1087 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPC_1087 IPR036169 DXP reductoisomerase, C-terminal domain superfamily YPC_1087 IPR026877 DXP reductoisomerase C-terminal domain YPC_1087 IPR036291 NAD(P)-binding domain superfamily YPC_1087 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal YPC_1087 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal YPC_1088 IPR001441 Decaprenyl diphosphate synthase-like YPC_1088 IPR036424 Decaprenyl diphosphate synthase-like superfamily YPC_1088 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site YPC_1089 IPR000374 Phosphatidate cytidylyltransferase YPC_1090 IPR001478 PDZ domain YPC_1090 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase YPC_1090 IPR008915 Peptidase M50 YPC_1090 IPR036034 PDZ superfamily YPC_1090 IPR041489 PDZ domain 6 YPC_1091 IPR039910 Surface antigen D15-like YPC_1091 IPR023707 Outer membrane protein assembly factor BamA YPC_1091 IPR034746 POTRA domain YPC_1091 IPR000184 Bacterial surface antigen (D15) YPC_1091 IPR010827 POTRA domain, BamA/TamA-like YPC_1092 IPR024930 Skp domain superfamily YPC_1092 IPR005632 Chaperone protein Skp YPC_1093 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD YPC_1093 IPR011004 Trimeric LpxA-like superfamily YPC_1093 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region YPC_1093 IPR018357 Hexapeptide transferase, conserved site YPC_1093 IPR001451 Hexapeptide repeat YPC_1094 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPC_1094 IPR029069 HotDog domain superfamily YPC_1094 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YPC_1095 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase YPC_1095 IPR001451 Hexapeptide repeat YPC_1095 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily YPC_1095 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal YPC_1095 IPR011004 Trimeric LpxA-like superfamily YPC_1095 IPR018357 Hexapeptide transferase, conserved site YPC_1096 IPR003835 Glycosyl transferase, family 19 YPC_1097 IPR001352 Ribonuclease HII/HIII YPC_1097 IPR024567 Ribonuclease HII/HIII domain YPC_1097 IPR012337 Ribonuclease H-like superfamily YPC_1097 IPR022898 Ribonuclease HII YPC_1097 IPR036397 Ribonuclease H superfamily YPC_1098 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain YPC_1098 IPR029460 DNA polymerase, helix-hairpin-helix motif YPC_1098 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPC_1098 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPC_1098 IPR004805 DNA polymerase III, alpha subunit YPC_1098 IPR016195 Polymerase/histidinol phosphatase-like YPC_1098 IPR040982 DNA polymerase III alpha subunit finger domain YPC_1098 IPR004013 PHP domain YPC_1098 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain YPC_1099 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal YPC_1099 IPR029045 ClpP/crotonase-like domain superfamily YPC_1099 IPR001095 Acetyl-CoA carboxylase, alpha subunit YPC_1100 IPR037478 YwkD-like domain YPC_1100 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YPC_1100 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPC_1100 IPR037523 Vicinal oxygen chelate (VOC) domain YPC_1101 IPR012094 tRNA(Ile)-lysidine synthase YPC_1101 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal YPC_1101 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal YPC_1101 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_1101 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal YPC_1101 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain YPC_1102 IPR008168 Cytochrome c, class IC YPC_1102 IPR009056 Cytochrome c-like domain YPC_1102 IPR036909 Cytochrome c-like domain superfamily YPC_1103 IPR038626 Rof-like superfamily YPC_1103 IPR023534 Rof/RNase P-like YPC_1103 IPR009778 Modulator of Rho-dependent transcription termination YPC_1104 IPR009624 Uncharacterised protein family UPF0253 YPC_1105 IPR038590 YaeQ superfamily YPC_1105 IPR009822 YaeQ YPC_1105 IPR011335 Restriction endonuclease type II-like YPC_1106 IPR000352 Peptide chain release factor class I YPC_1107 IPR038139 NlpE, C-terminal domain superfamily YPC_1107 IPR033450 NlpE, C-terminal OB domain YPC_1107 IPR007298 Copper resistance lipoprotein NlpE YPC_1108 IPR033730 Prokaryote proline-tRNA ligase core domain YPC_1108 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type YPC_1108 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) YPC_1108 IPR006195 Aminoacyl-tRNA synthetase, class II YPC_1108 IPR002316 Proline-tRNA ligase, class IIa YPC_1108 IPR036621 Anticodon-binding domain superfamily YPC_1108 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 YPC_1108 IPR004154 Anticodon-binding YPC_1108 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain YPC_1108 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily YPC_1109 IPR036414 YaeB, N-terminal domain superfamily YPC_1109 IPR041369 TrmO, C-terminal YPC_1109 IPR023370 TrmO-like, N-terminal domain YPC_1109 IPR023368 Uncharacterised protein family UPF0066, conserved site YPC_1109 IPR036413 YaeB-like superfamily YPC_1109 IPR040372 YaeB-like YPC_1110 IPR030852 Outer membrane lipoprotein RcsF YPC_1111 IPR004872 Lipoprotein NlpA family YPC_1112 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1112 IPR035906 MetI-like superfamily YPC_1113 IPR018449 NIL domain YPC_1113 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1113 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal YPC_1113 IPR017871 ABC transporter, conserved site YPC_1113 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain YPC_1113 IPR003439 ABC transporter-like YPC_1113 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria YPC_1113 IPR026253 Methionine import ATP-binding protein MetN YPC_1113 IPR003593 AAA+ ATPase domain YPC_1114 IPR036412 HAD-like superfamily YPC_1114 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase YPC_1114 IPR023214 HAD superfamily YPC_1114 IPR006549 HAD-superfamily hydrolase,subfamily IIIA YPC_1114 IPR006543 Histidinol-phosphate phosphatase YPC_1121 IPR018170 Aldo/keto reductase, conserved site YPC_1121 IPR020471 Aldo/keto reductase YPC_1121 IPR036812 NADP-dependent oxidoreductase domain superfamily YPC_1121 IPR023210 NADP-dependent oxidoreductase domain YPC_1123 IPR005135 Endonuclease/exonuclease/phosphatase YPC_1123 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YPC_1123 IPR022958 Uncharacterised protein family UPF0294 YPC_1124 IPR036779 LysM domain superfamily YPC_1124 IPR023346 Lysozyme-like domain superfamily YPC_1124 IPR000189 Prokaryotic transglycosylase, active site YPC_1124 IPR008258 Transglycosylase SLT domain 1 YPC_1124 IPR018392 LysM domain YPC_1125 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPC_1125 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain YPC_1125 IPR001279 Metallo-beta-lactamase YPC_1125 IPR017782 Hydroxyacylglutathione hydrolase YPC_1125 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain YPC_1126 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_1126 IPR013216 Methyltransferase type 11 YPC_1126 IPR026669 Arsenite methyltransferase-like YPC_1127 IPR022892 Ribonuclease HI YPC_1127 IPR012337 Ribonuclease H-like superfamily YPC_1127 IPR002156 Ribonuclease H domain YPC_1127 IPR036397 Ribonuclease H superfamily YPC_1128 IPR036397 Ribonuclease H superfamily YPC_1128 IPR006309 DNA polymerase 3, epsilon subunit YPC_1128 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain YPC_1128 IPR013520 Exonuclease, RNase T/DNA polymerase III YPC_1128 IPR012337 Ribonuclease H-like superfamily YPC_1130 IPR012681 Nucleobase cation symporter-1, NCS1 YPC_1130 IPR001248 Purine-cytosine permease YPC_1130 IPR038271 Purine-cytosine permease superfamily YPC_1133 IPR002611 IstB-like ATP-binding protein YPC_1133 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_1133 IPR001270 ClpA/B family YPC_1133 IPR003593 AAA+ ATPase domain YPC_1133 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1134 IPR012337 Ribonuclease H-like superfamily YPC_1134 IPR006120 Resolvase, HTH domain YPC_1134 IPR001584 Integrase, catalytic core YPC_1134 IPR017894 HTH domain, IS21 transposase-type YPC_1134 IPR036397 Ribonuclease H superfamily YPC_1136 IPR009241 Toxin HigB-like YPC_1136 IPR014056 Addiction module killer protein, predicted YPC_1140 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1140 IPR038724 Regulatory protein RepA YPC_1149 IPR038488 Integrase, DNA-binding domain superfamily YPC_1149 IPR002104 Integrase, catalytic domain YPC_1149 IPR013762 Integrase-like, catalytic domain superfamily YPC_1149 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPC_1149 IPR025166 Integrase, DNA-binding domain YPC_1149 IPR010998 Integrase/recombinase, N-terminal YPC_1154 IPR000037 SsrA-binding protein YPC_1154 IPR023620 Small protein B YPC_1154 IPR020081 SsrA-binding protein, conserved site YPC_1155 IPR023393 START-like domain superfamily YPC_1155 IPR005031 Coenzyme Q-binding protein COQ10, START domain YPC_1156 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YPC_1156 IPR005346 RnfH protein YPC_1156 IPR037021 RnfH superfamily YPC_1157 IPR026592 Outer membrane protein assembly factor BamE YPC_1157 IPR037873 BamE-like YPC_1157 IPR007450 Lipoprotein SmpA/OmlA YPC_1158 IPR003395 RecF/RecN/SMC, N-terminal YPC_1158 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1158 IPR004604 DNA recombination/repair protein RecN YPC_1159 IPR002504 NAD kinase YPC_1159 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal YPC_1159 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal YPC_1159 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily YPC_1160 IPR013805 GrpE nucleotide exchange factor, coiled-coil YPC_1160 IPR009012 GrpE nucleotide exchange factor, head YPC_1160 IPR000740 GrpE nucleotide exchange factor YPC_1161 IPR016142 Citrate synthase-like, large alpha subdomain YPC_1161 IPR002020 Citrate synthase YPC_1161 IPR010953 Citrate synthase, type I YPC_1161 IPR036969 Citrate synthase superfamily YPC_1161 IPR016143 Citrate synthase-like, small alpha subdomain YPC_1161 IPR019810 Citrate synthase active site YPC_1161 IPR024176 Citrate synthase, bacterial-type YPC_1163 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YPC_1163 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor YPC_1163 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit YPC_1164 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_1164 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily YPC_1164 IPR011281 Succinate dehydrogenase, flavoprotein subunit YPC_1164 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site YPC_1164 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPC_1164 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YPC_1164 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily YPC_1164 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YPC_1165 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal YPC_1165 IPR009051 Alpha-helical ferredoxin YPC_1165 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein YPC_1165 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPC_1165 IPR036010 2Fe-2S ferredoxin-like superfamily YPC_1165 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPC_1165 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_1165 IPR012675 Beta-grasp domain superfamily YPC_1166 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain YPC_1166 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily YPC_1166 IPR029061 Thiamin diphosphate-binding fold YPC_1166 IPR005475 Transketolase-like, pyrimidine-binding domain YPC_1166 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal YPC_1166 IPR011603 2-oxoglutarate dehydrogenase E1 component YPC_1166 IPR001017 Dehydrogenase, E1 component YPC_1167 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain YPC_1167 IPR000089 Biotin/lipoyl attachment YPC_1167 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPC_1167 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPC_1167 IPR006255 Dihydrolipoamide succinyltransferase YPC_1167 IPR011053 Single hybrid motif YPC_1167 IPR036625 E3-binding domain superfamily YPC_1167 IPR004167 Peripheral subunit-binding domain YPC_1168 IPR013815 ATP-grasp fold, subdomain 1 YPC_1168 IPR005811 ATP-citrate lyase/succinyl-CoA ligase YPC_1168 IPR005809 Succinate--CoA synthetase, beta subunit YPC_1168 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site YPC_1168 IPR016102 Succinyl-CoA synthetase-like YPC_1168 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type YPC_1168 IPR011761 ATP-grasp fold YPC_1169 IPR005811 ATP-citrate lyase/succinyl-CoA ligase YPC_1169 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site YPC_1169 IPR036291 NAD(P)-binding domain superfamily YPC_1169 IPR005810 Succinyl-CoA ligase, alpha subunit YPC_1169 IPR016102 Succinyl-CoA synthetase-like YPC_1169 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site YPC_1169 IPR003781 CoA-binding YPC_1170 IPR002585 Cytochrome ubiquinol oxidase subunit 1 YPC_1171 IPR003317 Cytochrome ubiquinol oxidase subunit 2 YPC_1172 IPR012994 Membrane bound YbgT-like YPC_1172 IPR011724 Cyd operon protein YbgT YPC_1173 IPR011846 Cyd operon protein YbgE YPC_1174 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family YPC_1174 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase YPC_1174 IPR006683 Thioesterase domain YPC_1174 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site YPC_1174 IPR029069 HotDog domain superfamily YPC_1175 IPR014163 Tol-Pal system, TolQ YPC_1175 IPR002898 MotA/TolQ/ExbB proton channel YPC_1176 IPR014168 Tol-Pal system protein TolR YPC_1176 IPR003400 Biopolymer transport protein ExbD/TolR YPC_1177 IPR014161 Tol-Pal system, TolA YPC_1177 IPR014161 Tol-Pal system, TolA YPC_1178 IPR036752 TolB, N-terminal domain superfamily YPC_1178 IPR011042 Six-bladed beta-propeller, TolB-like YPC_1178 IPR014167 Tol-Pal system protein TolB YPC_1178 IPR011659 WD40-like Beta Propeller YPC_1178 IPR007195 TolB, N-terminal YPC_1179 IPR006664 Outer membrane protein, bacterial YPC_1179 IPR039001 Peptidoglycan-associated lipoprotein YPC_1179 IPR006665 OmpA-like domain YPC_1179 IPR006690 Outer membrane protein, OmpA-like, conserved site YPC_1179 IPR036737 OmpA-like domain superfamily YPC_1179 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal YPC_1180 IPR032519 YbgF, trimerisation domain YPC_1180 IPR011990 Tetratricopeptide-like helical domain superfamily YPC_1180 IPR014162 Cell division coordinator CpoB, C-terminal YPC_1180 IPR013026 Tetratricopeptide repeat-containing domain YPC_1180 IPR019734 Tetratricopeptide repeat YPC_1180 IPR034706 Cell division coordinator CpoB YPC_1184 IPR036094 Quinolinate synthetase A superfamily YPC_1184 IPR023513 Quinolinate synthase A, type 1 YPC_1184 IPR003473 Quinolinate synthetase A YPC_1185 IPR006419 Nicotinamide mononucleotide transporter PnuC YPC_1186 IPR036837 Cation efflux protein, cytoplasmic domain superfamily YPC_1186 IPR027469 Cation efflux transmembrane domain superfamily YPC_1186 IPR023500 Zinc transporter ZitB YPC_1186 IPR002524 Cation efflux protein YPC_1187 IPR013785 Aldolase-type TIM barrel YPC_1187 IPR006218 DAHP synthetase I/KDSA YPC_1187 IPR006219 DHAP synthase, class 1 YPC_1188 IPR005952 Phosphoglycerate mutase 1 YPC_1188 IPR013078 Histidine phosphatase superfamily, clade-1 YPC_1188 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site YPC_1188 IPR029033 Histidine phosphatase superfamily YPC_1190 IPR011013 Galactose mutarotase-like domain superfamily YPC_1190 IPR013458 Aldose 1-epimerase, bacterial YPC_1190 IPR015443 Aldose 1-epimerase YPC_1190 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase YPC_1190 IPR014718 Glycoside hydrolase-type carbohydrate-binding YPC_1190 IPR018052 Aldose 1-epimerase, conserved site YPC_1192 IPR000705 Galactokinase YPC_1192 IPR022963 Galactokinase, bacterial YPC_1192 IPR019741 Galactokinase, conserved site YPC_1192 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPC_1192 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_1192 IPR006206 Mevalonate/galactokinase YPC_1192 IPR019539 Galactokinase galactose-binding domain YPC_1192 IPR013750 GHMP kinase, C-terminal domain YPC_1192 IPR036554 GHMP kinase, C-terminal domain superfamily YPC_1192 IPR006204 GHMP kinase N-terminal domain YPC_1192 IPR006203 GHMP kinase, ATP-binding, conserved site YPC_1193 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site YPC_1193 IPR001937 Galactose-1-phosphate uridyl transferase, class I YPC_1193 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal YPC_1193 IPR036265 HIT-like superfamily YPC_1193 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal YPC_1194 IPR036291 NAD(P)-binding domain superfamily YPC_1194 IPR005886 UDP-glucose 4-epimerase YPC_1194 IPR016040 NAD(P)-binding domain YPC_1197 IPR003593 AAA+ ATPase domain YPC_1197 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1197 IPR003439 ABC transporter-like YPC_1198 IPR008995 Molybdate/tungstate binding, C-terminal YPC_1198 IPR036390 Winged helix DNA-binding domain superfamily YPC_1198 IPR004606 Molybdenum-pterin binding YPC_1198 IPR005116 Transport-associated OB, type 1 YPC_1198 IPR003725 Molybdenum-binding protein ModE, N-terminal YPC_1198 IPR000847 Transcription regulator HTH, LysR YPC_1198 IPR016462 Molybdate-dependent transcriptional regulator ModE YPC_1198 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1200 IPR019702 Multidrug efflux pump accessory protein AcrZ YPC_1201 IPR005950 Molybdate ABC transporter, substrate-binding protein YPC_1202 IPR011867 Molybdate ABC transporter, permease protein YPC_1202 IPR035906 MetI-like superfamily YPC_1202 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1203 IPR008995 Molybdate/tungstate binding, C-terminal YPC_1203 IPR005116 Transport-associated OB, type 1 YPC_1203 IPR003593 AAA+ ATPase domain YPC_1203 IPR003439 ABC transporter-like YPC_1203 IPR017871 ABC transporter, conserved site YPC_1203 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1203 IPR015852 ABC transporter, molybdenum import, ModC YPC_1203 IPR004606 Molybdenum-pterin binding YPC_1203 IPR011868 Molybdate ABC transporter, ATP-binding protein YPC_1204 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPC_1204 IPR036412 HAD-like superfamily YPC_1204 IPR000150 Cof family YPC_1204 IPR023214 HAD superfamily YPC_1205 IPR022528 6-phosphogluconolactonase, YbhE-type YPC_1205 IPR019405 Lactonase, 7-bladed beta propeller YPC_1205 IPR015943 WD40/YVTN repeat-like-containing domain superfamily YPC_1205 IPR011045 Nitrous oxide reductase, N-terminal YPC_1206 IPR005814 Aminotransferase class-III YPC_1206 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_1206 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_1206 IPR015424 Pyridoxal phosphate-dependent transferase YPC_1206 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA YPC_1207 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB YPC_1207 IPR024177 Biotin synthase YPC_1207 IPR013785 Aldolase-type TIM barrel YPC_1207 IPR010722 Biotin and thiamin synthesis-associated domain YPC_1207 IPR006638 Elp3/MiaB/NifB YPC_1207 IPR007197 Radical SAM YPC_1208 IPR015424 Pyridoxal phosphate-dependent transferase YPC_1208 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria YPC_1208 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type YPC_1208 IPR004839 Aminotransferase, class I/classII YPC_1208 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPC_1208 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_1208 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_1209 IPR013216 Methyltransferase type 11 YPC_1209 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_1209 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC YPC_1210 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1210 IPR004472 Dethiobiotin synthase BioD YPC_1212 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_1212 IPR004807 UvrABC system, subunit B YPC_1212 IPR001650 Helicase, C-terminal YPC_1212 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1212 IPR024759 UvrB, YAD/RRR-motif-containing domain YPC_1212 IPR036876 UVR domain superfamily YPC_1212 IPR001943 UVR domain YPC_1212 IPR006935 Helicase/UvrB, N-terminal YPC_1212 IPR041471 UvrB, interaction domain YPC_1214 IPR018668 DNA-binding protein VF530-like YPC_1214 IPR036361 SAP domain superfamily YPC_1215 IPR010119 Gluconeogenesis factor YPC_1215 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 YPC_1215 IPR038136 Gluconeogenesis factor superfamily YPC_1216 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site YPC_1216 IPR013483 Molybdenum cofactor biosynthesis protein A YPC_1216 IPR006638 Elp3/MiaB/NifB YPC_1216 IPR013785 Aldolase-type TIM barrel YPC_1216 IPR007197 Radical SAM YPC_1216 IPR010505 Molybdenum cofactor synthesis C-terminal YPC_1217 IPR023045 Molybdenum cofactor biosynthesis C YPC_1217 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain YPC_1217 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily YPC_1218 IPR003749 Sulfur carrier ThiS/MoaD-like YPC_1218 IPR012675 Beta-grasp domain superfamily YPC_1218 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YPC_1219 IPR003448 Molybdopterin biosynthesis MoaE YPC_1219 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily YPC_1220 IPR006214 Bax inhibitor 1-related YPC_1223 IPR036515 Transposase IS200-like superfamily YPC_1223 IPR002686 Transposase IS200-like YPC_1226 IPR016162 Aldehyde dehydrogenase, N-terminal YPC_1226 IPR016161 Aldehyde/histidinol dehydrogenase YPC_1226 IPR016163 Aldehyde dehydrogenase, C-terminal YPC_1226 IPR016160 Aldehyde dehydrogenase, cysteine active site YPC_1226 IPR015590 Aldehyde dehydrogenase domain YPC_1226 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPC_1226 IPR011264 Betaine aldehyde dehydrogenase YPC_1227 IPR039538 BetI-type transcriptional repressor, C-terminal YPC_1227 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPC_1227 IPR001647 DNA-binding HTH domain, TetR-type YPC_1227 IPR009057 Homeobox-like domain superfamily YPC_1227 IPR017757 Transcriptional repressor BetI YPC_1227 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPC_1228 IPR018093 BCCT transporter, conserved site YPC_1228 IPR000060 BCCT transporter family YPC_1230 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1230 IPR000847 Transcription regulator HTH, LysR YPC_1230 IPR036390 Winged helix DNA-binding domain superfamily YPC_1230 IPR005119 LysR, substrate-binding YPC_1230 IPR037409 HTH-type transcriptional regulator XapR, PBP2 domain YPC_1232 IPR000845 Nucleoside phosphorylase domain YPC_1232 IPR018099 Purine phosphorylase, family 2, conserved site YPC_1232 IPR010943 Xanthosine phosphorylase YPC_1232 IPR035994 Nucleoside phosphorylase superfamily YPC_1232 IPR011268 Purine nucleoside phosphorylase YPC_1236 IPR025961 Heavy-metal resistance protein YPC_1237 IPR029151 Periplasmic sensor-like domain superfamily YPC_1237 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_1237 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_1237 IPR005467 Histidine kinase domain YPC_1237 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_1237 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_1237 IPR003594 Histidine kinase/HSP90-like ATPase YPC_1238 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1238 IPR003593 AAA+ ATPase domain YPC_1238 IPR011006 CheY-like superfamily YPC_1238 IPR009057 Homeobox-like domain superfamily YPC_1238 IPR002197 DNA binding HTH domain, Fis-type YPC_1238 IPR001789 Signal transduction response regulator, receiver domain YPC_1238 IPR025944 Sigma-54 interaction domain, conserved site YPC_1238 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPC_1238 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPC_1238 IPR002078 RNA polymerase sigma factor 54 interaction domain YPC_1239 IPR013785 Aldolase-type TIM barrel YPC_1239 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPC_1240 IPR005119 LysR, substrate-binding YPC_1240 IPR000847 Transcription regulator HTH, LysR YPC_1240 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1240 IPR036390 Winged helix DNA-binding domain superfamily YPC_1244 IPR000412 ABC-2 transporter YPC_1245 IPR000412 ABC-2 transporter YPC_1246 IPR003593 AAA+ ATPase domain YPC_1246 IPR017871 ABC transporter, conserved site YPC_1246 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1246 IPR003439 ABC transporter-like YPC_1247 IPR022936 Uncharacterised protein family UPF0194, membrane protein YbhG YPC_1247 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPC_1248 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPC_1248 IPR009057 Homeobox-like domain superfamily YPC_1248 IPR001647 DNA-binding HTH domain, TetR-type YPC_1248 IPR015292 Transcription regulator YbiH, C-terminal YPC_1248 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPC_1249 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1249 IPR014014 RNA helicase, DEAD-box type, Q motif YPC_1249 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_1249 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPC_1249 IPR028622 ATP-dependent RNA helicase RhlE YPC_1249 IPR011545 DEAD/DEAH box helicase domain YPC_1249 IPR001650 Helicase, C-terminal YPC_1250 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal YPC_1250 IPR003346 Transposase, IS116/IS110/IS902 YPC_1251 IPR009057 Homeobox-like domain superfamily YPC_1251 IPR012337 Ribonuclease H-like superfamily YPC_1251 IPR038717 Tc1-like transposase, DDE domain YPC_1251 IPR025959 Winged helix-turn helix domain YPC_1258 IPR001207 Transposase, mutator type YPC_1261 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase YPC_1261 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase YPC_1261 IPR029056 Ribokinase-like YPC_1264 IPR036501 Inhibitor of vertebrate lysozyme superfamily YPC_1264 IPR014453 Inhibitor of vertebrate lysozyme YPC_1265 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal YPC_1265 IPR005218 Diacylglycerol/lipid kinase YPC_1265 IPR001206 Diacylglycerol kinase, catalytic domain YPC_1265 IPR022433 Lipid kinase YegS YPC_1265 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily YPC_1268 IPR036913 YegP-like superfamily YPC_1268 IPR010879 Domain of unknown function DUF1508 YPC_1269 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1269 IPR039420 Transcriptional regulatory protein WalR-like YPC_1269 IPR001789 Signal transduction response regulator, receiver domain YPC_1269 IPR016032 Signal transduction response regulator, C-terminal effector YPC_1269 IPR011006 CheY-like superfamily YPC_1269 IPR001867 OmpR/PhoB-type DNA-binding domain YPC_1270 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_1270 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_1270 IPR005467 Histidine kinase domain YPC_1270 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_1270 IPR003594 Histidine kinase/HSP90-like ATPase YPC_1270 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_1270 IPR003660 HAMP domain YPC_1271 IPR004638 Drug resistance transporter EmrB-like YPC_1271 IPR011701 Major facilitator superfamily YPC_1271 IPR020846 Major facilitator superfamily domain YPC_1271 IPR023721 Multidrug resistance protein MdtD YPC_1271 IPR036259 MFS transporter superfamily YPC_1274 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPC_1274 IPR022824 Multidrug resistance protein MdtA YPC_1274 IPR006143 RND efflux pump, membrane fusion protein YPC_1275 IPR003593 AAA+ ATPase domain YPC_1275 IPR003439 ABC transporter-like YPC_1275 IPR017871 ABC transporter, conserved site YPC_1275 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1275 IPR013611 Transport-associated OB, type 2 YPC_1275 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPC_1275 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YPC_1275 IPR008995 Molybdate/tungstate binding, C-terminal YPC_1276 IPR004839 Aminotransferase, class I/classII YPC_1276 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1276 IPR000524 Transcription regulator HTH, GntR YPC_1276 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_1276 IPR015424 Pyridoxal phosphate-dependent transferase YPC_1276 IPR036390 Winged helix DNA-binding domain superfamily YPC_1277 IPR005814 Aminotransferase class-III YPC_1277 IPR004632 4-aminobutyrate aminotransferase, bacterial YPC_1277 IPR015424 Pyridoxal phosphate-dependent transferase YPC_1277 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_1277 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_1279 IPR035906 MetI-like superfamily YPC_1279 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1280 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1280 IPR035906 MetI-like superfamily YPC_1281 IPR042054 YegD-like YPC_1281 IPR013126 Heat shock protein 70 family YPC_1281 IPR018181 Heat shock protein 70, conserved site YPC_1282 IPR000644 CBS domain YPC_1282 IPR006667 SLC41 divalent cation transporters, integral membrane domain YPC_1282 IPR006669 Magnesium transporter MgtE YPC_1282 IPR038048 Magnesium transporter MgtE, transmembrane domain YPC_1282 IPR006668 Magnesium transporter, MgtE intracellular domain YPC_1282 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily YPC_1282 IPR038076 MgtE, N-terminal domain superfamily YPC_1284 IPR030673 Pyrophosphatase, GppA/Ppx-type YPC_1284 IPR022371 Exopolyphosphatase YPC_1284 IPR003695 Ppx/GppA phosphatase YPC_1285 IPR001736 Phospholipase D/Transphosphatidylase YPC_1285 IPR041108 Polyphosphate kinase, C-terminal domain 1 YPC_1285 IPR024953 Polyphosphate kinase middle domain YPC_1285 IPR036832 Polyphosphate kinase N-terminal domain superfamily YPC_1285 IPR025198 Polyphosphate kinase N-terminal domain YPC_1285 IPR003414 Polyphosphate kinase YPC_1285 IPR036830 Polyphosphate kinase middle domain superfamily YPC_1285 IPR025200 Polyphosphate kinase C-terminal domain 2 YPC_1289 IPR015850 ABC transporter, phosphate import, PstB YPC_1289 IPR005670 Phosphate transport system permease protein 1 YPC_1289 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1289 IPR003439 ABC transporter-like YPC_1289 IPR003593 AAA+ ATPase domain YPC_1289 IPR017871 ABC transporter, conserved site YPC_1293 IPR016181 Acyl-CoA N-acyltransferase YPC_1293 IPR000182 GNAT domain YPC_1294 IPR036477 Formyl transferase, N-terminal domain superfamily YPC_1294 IPR004607 Phosphoribosylglycinamide formyltransferase YPC_1294 IPR002376 Formyl transferase, N-terminal YPC_1294 IPR001555 Phosphoribosylglycinamide formyltransferase, active site YPC_1295 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase YPC_1295 IPR036676 PurM-like, C-terminal domain superfamily YPC_1295 IPR016188 PurM-like, N-terminal domain YPC_1295 IPR036921 PurM-like, N-terminal domain superfamily YPC_1295 IPR010918 PurM-like, C-terminal domain YPC_1296 IPR005765 Uracil phosphoribosyl transferase YPC_1296 IPR034332 Uracil phosphoribosyltransferase, bacterial-type YPC_1296 IPR000836 Phosphoribosyltransferase domain YPC_1296 IPR029057 Phosphoribosyltransferase-like YPC_1298 IPR002686 Transposase IS200-like YPC_1298 IPR036515 Transposase IS200-like superfamily YPC_1299 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1299 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae YPC_1299 IPR013317 Chromosomal replication initiator protein DnaA YPC_1299 IPR017788 DnaA regulatory inactivator Hda YPC_1299 IPR020591 Chromosomal replication control, initiator DnaA-like YPC_1300 IPR006659 Arsenate reductase YPC_1300 IPR036249 Thioredoxin-like superfamily YPC_1300 IPR006660 Arsenate reductase-like YPC_1301 IPR011990 Tetratricopeptide-like helical domain superfamily YPC_1301 IPR030873 Beta-barrel assembly-enhancing protease YPC_1301 IPR001915 Peptidase M48 YPC_1301 IPR011716 Tetratricopeptide TPR-3 YPC_1302 IPR002549 Transmembrane protein TqsA-like YPC_1307 IPR013766 Thioredoxin domain YPC_1307 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YPC_1307 IPR036249 Thioredoxin-like superfamily YPC_1307 IPR024706 Peroxiredoxin, AhpC-type YPC_1308 IPR016867 Glycine cleavage system transcriptional repressor YPC_1308 IPR002912 ACT domain YPC_1309 IPR013785 Aldolase-type TIM barrel YPC_1309 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA YPC_1309 IPR002220 DapA-like YPC_1309 IPR020625 Schiff base-forming aldolase, active site YPC_1309 IPR020624 Schiff base-forming aldolase, conserved site YPC_1310 IPR010653 NlpB/DapX lipoprotein YPC_1310 IPR042268 Outer membrane protein assembly factor BamC, C-terminal YPC_1310 IPR014524 Outer membrane protein assembly factor BamC YPC_1312 IPR002686 Transposase IS200-like YPC_1312 IPR036515 Transposase IS200-like superfamily YPC_1313 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase YPC_1313 IPR018236 SAICAR synthetase, conserved site YPC_1313 IPR028923 SAICAR synthetase/ADE2, N-terminal YPC_1313 IPR033934 Bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide synthase YPC_1314 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative YPC_1315 IPR007382 Uncharacterised protein family UPF0756, transmembrame YPC_1316 IPR016181 Acyl-CoA N-acyltransferase YPC_1316 IPR038321 TmcA, C-terminal domain superfamily YPC_1316 IPR032672 TmcA/NAT10/Kre33 YPC_1316 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1316 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA YPC_1316 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain YPC_1316 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal YPC_1316 IPR000182 GNAT domain YPC_1316 IPR007807 Helicase domain YPC_1317 IPR020910 Uncharacterised protein family UPF0370 YPC_1318 IPR003709 Peptidase M15B YPC_1318 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily YPC_1319 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPC_1319 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria YPC_1319 IPR002933 Peptidase M20 YPC_1319 IPR011650 Peptidase M20, dimerisation domain YPC_1319 IPR036264 Bacterial exopeptidase dimerisation domain YPC_1320 IPR006660 Arsenate reductase-like YPC_1320 IPR036249 Thioredoxin-like superfamily YPC_1320 IPR006504 Transcriptional regulator Spx/MgsR YPC_1324 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1324 IPR035906 MetI-like superfamily YPC_1325 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YPC_1325 IPR003439 ABC transporter-like YPC_1325 IPR003593 AAA+ ATPase domain YPC_1325 IPR008995 Molybdate/tungstate binding, C-terminal YPC_1325 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1325 IPR017871 ABC transporter, conserved site YPC_1325 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPC_1325 IPR013611 Transport-associated OB, type 2 YPC_1326 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPC_1326 IPR024607 Sulfatase, conserved site YPC_1326 IPR000917 Sulfatase, N-terminal YPC_1327 IPR013785 Aldolase-type TIM barrel YPC_1327 IPR023885 4Fe4S-binding SPASM domain YPC_1327 IPR007197 Radical SAM YPC_1327 IPR034491 Anaerobic Ser-type sulfatase-maturating enzyme YPC_1329 IPR007404 LexA-binding, inner membrane-associated putative hydrolase YPC_1333 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPC_1333 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPC_1333 IPR001036 Acriflavin resistance protein YPC_1336 IPR016032 Signal transduction response regulator, C-terminal effector YPC_1336 IPR000792 Transcription regulator LuxR, C-terminal YPC_1336 IPR011006 CheY-like superfamily YPC_1336 IPR001789 Signal transduction response regulator, receiver domain YPC_1337 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_1337 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPC_1337 IPR004496 Ferredoxin-type protein NapF YPC_1338 IPR005623 Chaperone NapD, nitrate reductase assembly YPC_1339 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPC_1339 IPR006657 Molybdopterin dinucleotide-binding domain YPC_1339 IPR041957 Nitrate reductase NapA-like, molybdopterin-binding domain YPC_1339 IPR009010 Aspartate decarboxylase-like domain superfamily YPC_1339 IPR006311 Twin-arginine translocation pathway, signal sequence YPC_1339 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPC_1339 IPR010051 Periplasmic nitrate reductase, large subunit YPC_1339 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPC_1339 IPR006656 Molybdopterin oxidoreductase YPC_1341 IPR036280 Multiheme cytochrome superfamily YPC_1341 IPR005591 Nitrate reductase cytochrome c-type subunit NapB YPC_1341 IPR011031 Multihaem cytochrome YPC_1342 IPR011031 Multihaem cytochrome YPC_1342 IPR024717 Denitrification system component NapC/NirT/NrfH YPC_1342 IPR036280 Multiheme cytochrome superfamily YPC_1342 IPR005126 NapC/NirT cytochrome c, N-terminal YPC_1342 IPR038266 NapC/NirT cytochrome c superfamily YPC_1342 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT YPC_1343 IPR000086 NUDIX hydrolase domain YPC_1343 IPR015797 NUDIX hydrolase-like domain superfamily YPC_1343 IPR004385 Nucleoside diphosphate pyrophosphatase YPC_1344 IPR012188 NAD(P)-dependent malic enzyme YPC_1344 IPR042112 Phosphate acetyltransferase, domain 2 YPC_1344 IPR042113 Phosphate acetyltransferase, domain 1 YPC_1344 IPR036291 NAD(P)-binding domain superfamily YPC_1344 IPR002505 Phosphate acetyl/butaryl transferase YPC_1344 IPR012302 Malic enzyme, NAD-binding YPC_1344 IPR037062 Malic enzyme, N-terminal domain superfamily YPC_1344 IPR015884 Malic enzyme, conserved site YPC_1344 IPR012301 Malic enzyme, N-terminal domain YPC_1345 IPR003791 Protein of unknown function UPF0178 YPC_1346 IPR018375 Coproporphyrinogen III oxidase, conserved site YPC_1346 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily YPC_1346 IPR001260 Coproporphyrinogen III oxidase, aerobic YPC_1347 IPR000182 GNAT domain YPC_1347 IPR016181 Acyl-CoA N-acyltransferase YPC_1347 IPR023072 Acetyltransferase, YpeA YPC_1350 IPR005546 Autotransporter beta-domain YPC_1350 IPR036709 Autotransporter beta-domain superfamily YPC_1350 IPR006315 Outer membrane autotransporter barrel YPC_1350 IPR024973 ESPR domain YPC_1350 IPR030930 Adhesin of bacterial autotransporter system YPC_1350 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPC_1350 IPR011050 Pectin lyase fold/virulence factor YPC_1350 IPR004899 Pertactin, central region YPC_1350 IPR003991 Pertactin virulence factor family YPC_1352 IPR036700 Bacterial OB-fold superfamily YPC_1352 IPR005220 Bacterial OB-fold YPC_1352 IPR016052 Bacteriophage 933W, L0136 YPC_1353 IPR010938 Protein of unknown function DUF1131 YPC_1353 IPR038714 YfeY-like superfamily YPC_1354 IPR011008 Dimeric alpha-beta barrel YPC_1354 IPR006314 Dyp-type peroxidase YPC_1355 IPR020625 Schiff base-forming aldolase, active site YPC_1355 IPR005264 N-acetylneuraminate lyase YPC_1355 IPR002220 DapA-like YPC_1355 IPR013785 Aldolase-type TIM barrel YPC_1356 IPR011060 Ribulose-phosphate binding barrel YPC_1356 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase YPC_1356 IPR013785 Aldolase-type TIM barrel YPC_1357 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPC_1357 IPR001611 Leucine-rich repeat YPC_1357 IPR032675 Leucine-rich repeat domain superfamily YPC_1358 IPR000600 ROK family YPC_1358 IPR023945 N-acetylmannosamine kinase, bacterial YPC_1359 IPR037012 YhcH/YjgK/YiaL superfamily YPC_1359 IPR004375 YhcH/YjgK/YiaL family YPC_1361 IPR001347 Sugar isomerase (SIS) YPC_1361 IPR009057 Homeobox-like domain superfamily YPC_1361 IPR000281 Helix-turn-helix protein RpiR YPC_1361 IPR035472 RpiR-like, SIS domain YPC_1361 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1362 IPR020846 Major facilitator superfamily domain YPC_1362 IPR036259 MFS transporter superfamily YPC_1362 IPR004742 Sialic acid transporter YPC_1362 IPR011701 Major facilitator superfamily YPC_1363 IPR034408 Sulphate/thiosulphate-binding site YPC_1363 IPR000957 Sulphate/thiosulphate-binding, conserved site YPC_1363 IPR005669 Thiosulphate/Sulfate-binding protein YPC_1364 IPR000957 Sulphate/thiosulphate-binding, conserved site YPC_1364 IPR034408 Sulphate/thiosulphate-binding site YPC_1364 IPR005669 Thiosulphate/Sulfate-binding protein YPC_1365 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1365 IPR011865 Sulphate ABC transporter, permease protein CysT YPC_1365 IPR035906 MetI-like superfamily YPC_1365 IPR005667 Sulphate ABC transporter permease protein 2 YPC_1366 IPR035906 MetI-like superfamily YPC_1366 IPR011866 Sulphate ABC transporter, permease protein CysW YPC_1366 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1366 IPR005667 Sulphate ABC transporter permease protein 2 YPC_1367 IPR005666 Sulphate transport system permease protein 1 YPC_1367 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1367 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal YPC_1367 IPR017871 ABC transporter, conserved site YPC_1367 IPR003439 ABC transporter-like YPC_1367 IPR003593 AAA+ ATPase domain YPC_1367 IPR008995 Molybdate/tungstate binding, C-terminal YPC_1368 IPR001926 Pyridoxal-phosphate dependent enzyme YPC_1368 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPC_1368 IPR005858 Cysteine synthase CysM YPC_1368 IPR005856 Cysteine synthase YPC_1368 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPC_1370 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1370 IPR011006 CheY-like superfamily YPC_1370 IPR001867 OmpR/PhoB-type DNA-binding domain YPC_1370 IPR039420 Transcriptional regulatory protein WalR-like YPC_1370 IPR016032 Signal transduction response regulator, C-terminal effector YPC_1370 IPR001789 Signal transduction response regulator, receiver domain YPC_1371 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_1371 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_1371 IPR005467 Histidine kinase domain YPC_1371 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_1371 IPR003594 Histidine kinase/HSP90-like ATPase YPC_1371 IPR003660 HAMP domain YPC_1371 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_1374 IPR015424 Pyridoxal phosphate-dependent transferase YPC_1374 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_1374 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_1374 IPR004839 Aminotransferase, class I/classII YPC_1374 IPR027619 Putative C-S lyase YPC_1376 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPC_1376 IPR007865 Aminopeptidase P, N-terminal YPC_1376 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPC_1376 IPR036005 Creatinase/aminopeptidase-like YPC_1376 IPR000994 Peptidase M24 YPC_1378 IPR001734 Sodium/solute symporter YPC_1378 IPR038377 Sodium/glucose symporter superfamily YPC_1379 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_1379 IPR023753 FAD/NAD(P)-binding domain YPC_1379 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPC_1379 IPR017758 Coenzyme A disulphide reductase YPC_1379 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPC_1379 IPR023536 Coenzyme A disulphide reductase, staphyolococci YPC_1380 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1380 IPR003439 ABC transporter-like YPC_1380 IPR017911 ABC transporter, macrolide export, ATP-binding domain YPC_1380 IPR017871 ABC transporter, conserved site YPC_1380 IPR025857 MacB-like periplasmic core domain YPC_1380 IPR003593 AAA+ ATPase domain YPC_1380 IPR003838 ABC transporter permease protein domain YPC_1381 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPC_1381 IPR030190 Macrolide export protein MacA YPC_1381 IPR006143 RND efflux pump, membrane fusion protein YPC_1382 IPR011006 CheY-like superfamily YPC_1382 IPR001867 OmpR/PhoB-type DNA-binding domain YPC_1382 IPR001789 Signal transduction response regulator, receiver domain YPC_1382 IPR039420 Transcriptional regulatory protein WalR-like YPC_1382 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1383 IPR032404 Two-component sensor protein CpxA, periplasmic domain YPC_1383 IPR003660 HAMP domain YPC_1383 IPR003594 Histidine kinase/HSP90-like ATPase YPC_1383 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_1383 IPR005467 Histidine kinase domain YPC_1383 IPR038515 CpxA, periplasmic domain superfamily YPC_1383 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_1383 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_1383 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_1387 IPR002611 IstB-like ATP-binding protein YPC_1387 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_1387 IPR001270 ClpA/B family YPC_1387 IPR003593 AAA+ ATPase domain YPC_1387 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1388 IPR036397 Ribonuclease H superfamily YPC_1388 IPR012337 Ribonuclease H-like superfamily YPC_1388 IPR006120 Resolvase, HTH domain YPC_1388 IPR017894 HTH domain, IS21 transposase-type YPC_1388 IPR001584 Integrase, catalytic core YPC_1390 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 YPC_1390 IPR011055 Duplicated hybrid motif YPC_1391 IPR006318 Phosphotransferase system, enzyme I-like YPC_1391 IPR036618 PtsI, HPr-binding domain superfamily YPC_1391 IPR018274 PEP-utilising enzyme, active site YPC_1391 IPR008279 PEP-utilising enzyme, mobile domain YPC_1391 IPR023151 PEP-utilising enzyme, conserved site YPC_1391 IPR036637 Phosphohistidine domain superfamily YPC_1391 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPC_1391 IPR000121 PEP-utilising enzyme, C-terminal YPC_1391 IPR008731 Phosphotransferase system, enzyme I N-terminal YPC_1391 IPR024692 Phosphotransferase system, enzyme I YPC_1391 IPR040442 Pyruvate kinase-like domain superfamily YPC_1392 IPR035895 HPr-like superfamily YPC_1392 IPR000032 Phosphocarrier protein HPr-like YPC_1392 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPC_1392 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YPC_1393 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPC_1393 IPR005856 Cysteine synthase YPC_1393 IPR001926 Pyridoxal-phosphate dependent enzyme YPC_1393 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPC_1393 IPR005859 Cysteine synthase CysK YPC_1394 IPR022985 Sulfate transporter CysZ YPC_1395 IPR007449 ZipA, C-terminal FtsZ-binding domain YPC_1395 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily YPC_1395 IPR011919 Cell division protein ZipA YPC_1396 IPR041663 DisA/LigA, helix-hairpin-helix motif YPC_1396 IPR018239 NAD-dependent DNA ligase, active site YPC_1396 IPR033136 NAD-dependent DNA ligase, conserved site YPC_1396 IPR001679 NAD-dependent DNA ligase YPC_1396 IPR013839 NAD-dependent DNA ligase, adenylation YPC_1396 IPR013840 NAD-dependent DNA ligase, N-terminal YPC_1396 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type YPC_1396 IPR036420 BRCT domain superfamily YPC_1396 IPR001357 BRCT domain YPC_1396 IPR012340 Nucleic acid-binding, OB-fold YPC_1396 IPR004150 NAD-dependent DNA ligase, OB-fold YPC_1396 IPR010994 RuvA domain 2-like YPC_1396 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPC_1397 IPR024530 Putative quorum-sensing-regulated virulence factor YPC_1403 IPR002686 Transposase IS200-like YPC_1403 IPR036515 Transposase IS200-like superfamily YPC_1405 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding YPC_1405 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPC_1405 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial YPC_1405 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPC_1405 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 YPC_1405 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPC_1405 IPR033910 Glutamyl-tRNA synthetase YPC_1405 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_1409 IPR008276 Concentrative nucleoside transporter YPC_1409 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain YPC_1409 IPR002668 Concentrative nucleoside transporter N-terminal domain YPC_1409 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial YPC_1409 IPR011657 Concentrative nucleoside transporter C-terminal domain YPC_1410 IPR001046 NRAMP family YPC_1414 IPR023210 NADP-dependent oxidoreductase domain YPC_1414 IPR036812 NADP-dependent oxidoreductase domain superfamily YPC_1416 IPR005119 LysR, substrate-binding YPC_1416 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1416 IPR036390 Winged helix DNA-binding domain superfamily YPC_1416 IPR000847 Transcription regulator HTH, LysR YPC_1418 IPR003836 Glucokinase YPC_1419 IPR010856 Protein of unknown function DUF1479 YPC_1419 IPR027443 Isopenicillin N synthase-like YPC_1420 IPR004839 Aminotransferase, class I/classII YPC_1420 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_1420 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_1420 IPR015424 Pyridoxal phosphate-dependent transferase YPC_1421 IPR016174 Di-haem cytochrome, transmembrane YPC_1421 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPC_1428 IPR020945 DMSO/Nitrate reductase chaperone YPC_1428 IPR036411 TorD-like superfamily YPC_1428 IPR028611 Tat proofreading chaperone DmsD YPC_1428 IPR026269 Tat proofreading chaperone DmsD-type YPC_1429 IPR007059 DMSO reductase anchor subunit (DmsC) YPC_1430 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_1430 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPC_1430 IPR014297 Dimethylsulphoxide reductase, chain B YPC_1431 IPR006311 Twin-arginine translocation pathway, signal sequence YPC_1431 IPR009010 Aspartate decarboxylase-like domain superfamily YPC_1431 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPC_1431 IPR006657 Molybdopterin dinucleotide-binding domain YPC_1431 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE YPC_1431 IPR006656 Molybdopterin oxidoreductase YPC_1431 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPC_1436 IPR003439 ABC transporter-like YPC_1436 IPR003593 AAA+ ATPase domain YPC_1436 IPR015853 ABC transporter, ferric cation import, FbpC YPC_1436 IPR030287 Fe(3+) ions import ATP-binding protein FbpC YPC_1436 IPR008995 Molybdate/tungstate binding, C-terminal YPC_1436 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1436 IPR017871 ABC transporter, conserved site YPC_1437 IPR035906 MetI-like superfamily YPC_1437 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1438 IPR035906 MetI-like superfamily YPC_1438 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1439 IPR026045 Ferric binding protein YPC_1439 IPR006061 Solute-binding family 1, conserved site YPC_1440 IPR023346 Lysozyme-like domain superfamily YPC_1440 IPR011757 Lytic transglycosylase MltB YPC_1440 IPR031304 Transglycosylase SLT domain 2 YPC_1452 IPR041546 ClpA/ClpB, AAA lid domain YPC_1452 IPR003593 AAA+ ATPase domain YPC_1452 IPR003959 ATPase, AAA-type, core YPC_1452 IPR017729 Type VI secretion system, ATPase ClpV1 YPC_1452 IPR036628 Clp, N-terminal domain superfamily YPC_1452 IPR004176 Clp, N-terminal YPC_1452 IPR001270 ClpA/B family YPC_1452 IPR018368 ClpA/B, conserved site 1 YPC_1452 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1452 IPR028299 ClpA/B, conserved site 2 YPC_1452 IPR019489 Clp ATPase, C-terminal YPC_1453 IPR008966 Adhesion domain superfamily YPC_1453 IPR036937 Fimbrial-type adhesion domain superfamily YPC_1453 IPR039458 FimA-like YPC_1454 IPR016147 Pili assembly chaperone, N-terminal YPC_1454 IPR008962 PapD-like superfamily YPC_1454 IPR018046 Pili assembly chaperone, conserved site YPC_1454 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPC_1454 IPR013783 Immunoglobulin-like fold YPC_1454 IPR001829 Pili assembly chaperone, bacterial YPC_1454 IPR016148 Pili assembly chaperone, C-terminal YPC_1455 IPR042186 Outer membrane usher protein FimD, plug domain YPC_1455 IPR018030 Fimbrial membrane usher, conserved site YPC_1455 IPR000015 Outer membrane usher protein YPC_1455 IPR037224 PapC, N-terminal domain superfamily YPC_1455 IPR025885 PapC, N-terminal domain YPC_1455 IPR025949 PapC-like, C-terminal domain YPC_1456 IPR001207 Transposase, mutator type YPC_1457 IPR018030 Fimbrial membrane usher, conserved site YPC_1457 IPR000015 Outer membrane usher protein YPC_1457 IPR042186 Outer membrane usher protein FimD, plug domain YPC_1457 IPR025949 PapC-like, C-terminal domain YPC_1457 IPR025885 PapC, N-terminal domain YPC_1457 IPR037224 PapC, N-terminal domain superfamily YPC_1465 IPR006120 Resolvase, HTH domain YPC_1465 IPR012337 Ribonuclease H-like superfamily YPC_1465 IPR001584 Integrase, catalytic core YPC_1465 IPR017894 HTH domain, IS21 transposase-type YPC_1465 IPR036397 Ribonuclease H superfamily YPC_1466 IPR003593 AAA+ ATPase domain YPC_1466 IPR002611 IstB-like ATP-binding protein YPC_1466 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_1466 IPR001270 ClpA/B family YPC_1466 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1471 IPR037026 Vgr protein, OB-fold domain superfamily YPC_1471 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPC_1471 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPC_1471 IPR006531 Gp5 N-terminal YPC_1477 IPR004624 PhnA protein YPC_1477 IPR013988 PhnA protein, C-terminal YPC_1477 IPR013987 PhnA protein, N-terminal YPC_1480 IPR007156 LemA YPC_1480 IPR023353 LemA-like domain superfamily YPC_1485 IPR003439 ABC transporter-like YPC_1485 IPR003593 AAA+ ATPase domain YPC_1485 IPR017871 ABC transporter, conserved site YPC_1485 IPR005895 ABC transporter, haem export, CcmA YPC_1485 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1486 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria YPC_1486 IPR003544 Cytochrome c-type biogenesis protein CcmB YPC_1487 IPR002541 Cytochrome c assembly protein YPC_1487 IPR003557 Cytochrome c-type biogenesis protein CcmC YPC_1488 IPR007078 Haem exporter protein D (CcmD) YPC_1491 IPR013766 Thioredoxin domain YPC_1491 IPR017937 Thioredoxin, conserved site YPC_1491 IPR036249 Thioredoxin-like superfamily YPC_1491 IPR013740 Redoxin YPC_1491 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE YPC_1494 IPR007428 MlaA lipoprotein YPC_1495 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPC_1495 IPR042117 OMPP1/FadL/TodX superfamily YPC_1496 IPR035571 UPF0234-like, C-terminal YPC_1496 IPR005272 Conserved hypothetical protein CHP00743 YPC_1497 IPR002155 Thiolase YPC_1497 IPR016039 Thiolase-like YPC_1497 IPR020615 Thiolase, acyl-enzyme intermediate active site YPC_1497 IPR020610 Thiolase, active site YPC_1497 IPR020617 Thiolase, C-terminal YPC_1497 IPR020616 Thiolase, N-terminal YPC_1497 IPR012806 Acetyl-CoA C-acyltransferase FadI YPC_1497 IPR020613 Thiolase, conserved site YPC_1498 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding YPC_1498 IPR036291 NAD(P)-binding domain superfamily YPC_1498 IPR012802 Fatty oxidation complex, alpha subunit FadJ YPC_1498 IPR001753 Enoyl-CoA hydratase/isomerase YPC_1498 IPR029045 ClpP/crotonase-like domain superfamily YPC_1498 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPC_1498 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal YPC_1498 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site YPC_1499 IPR013078 Histidine phosphatase superfamily, clade-1 YPC_1499 IPR004449 Phosphohistidine phosphatase SixA YPC_1499 IPR029033 Histidine phosphatase superfamily YPC_1500 IPR036063 Smr domain superfamily YPC_1500 IPR002625 Smr domain YPC_1500 IPR022990 Uncharacterised protein family UPF0115 YPC_1501 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPC_1501 IPR004556 Methyltransferase HemK-like YPC_1501 IPR007848 Methyltransferase small domain YPC_1501 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_1501 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase YPC_1502 IPR020541 Chorismate synthase, conserved site YPC_1502 IPR035904 Chorismate synthase AroC superfamily YPC_1502 IPR000453 Chorismate synthase YPC_1503 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily YPC_1503 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase YPC_1504 IPR002781 Transmembrane protein TauE-like YPC_1506 IPR007411 Elongation factor P hydroxylase YPC_1507 IPR014987 Uncharacterised protein family YfcL YPC_1508 IPR006076 FAD dependent oxidoreductase YPC_1508 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_1508 IPR008471 MnmC-like methyltransferase YPC_1508 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal YPC_1508 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_1508 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC YPC_1509 IPR000794 Beta-ketoacyl synthase YPC_1509 IPR016039 Thiolase-like YPC_1509 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPC_1509 IPR014030 Beta-ketoacyl synthase, N-terminal YPC_1509 IPR014031 Beta-ketoacyl synthase, C-terminal YPC_1509 IPR018201 Beta-ketoacyl synthase, active site YPC_1511 IPR001920 Asp/Glu racemase YPC_1511 IPR004380 Aspartate racemase YPC_1511 IPR033134 Asp/Glu racemase, active site 2 YPC_1511 IPR018187 Asp/Glu racemase, active site 1 YPC_1511 IPR015942 Asp/Glu/hydantoin racemase YPC_1513 IPR008966 Adhesion domain superfamily YPC_1513 IPR000259 Fimbrial-type adhesion domain YPC_1513 IPR036937 Fimbrial-type adhesion domain superfamily YPC_1514 IPR023597 Flagellar regulator Flk YPC_1515 IPR000620 EamA domain YPC_1517 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPC_1517 IPR020921 Erythronate-4-phosphate dehydrogenase YPC_1517 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPC_1517 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPC_1517 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPC_1517 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain YPC_1517 IPR036291 NAD(P)-binding domain superfamily YPC_1517 IPR038251 PdxB, dimerisation domain superfamily YPC_1518 IPR036291 NAD(P)-binding domain superfamily YPC_1518 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPC_1518 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPC_1519 IPR020095 Pseudouridine synthase I, TruA, C-terminal YPC_1519 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPC_1519 IPR001406 Pseudouridine synthase I, TruA YPC_1519 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain YPC_1520 IPR032816 SNARE associated Golgi protein YPC_1520 IPR032818 DedA family YPC_1521 IPR041010 Acetyl-coA carboxylase zinc finger domain YPC_1521 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal YPC_1521 IPR029045 ClpP/crotonase-like domain superfamily YPC_1521 IPR034733 Acetyl-CoA carboxylase YPC_1521 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit YPC_1522 IPR013221 Mur ligase, central YPC_1522 IPR036615 Mur ligase, C-terminal domain superfamily YPC_1522 IPR004101 Mur ligase, C-terminal YPC_1522 IPR036565 Mur-like, catalytic domain superfamily YPC_1522 IPR018109 Folylpolyglutamate synthetase, conserved site YPC_1522 IPR001645 Folylpolyglutamate synthetase YPC_1523 IPR032898 Cell division protein DedD YPC_1523 IPR007730 Sporulation-like domain YPC_1523 IPR036680 Sporulation-like domain superfamily YPC_1524 IPR003825 Colicin V production, CvpA YPC_1525 IPR029055 Nucleophile aminohydrolases, N-terminal YPC_1525 IPR000836 Phosphoribosyltransferase domain YPC_1525 IPR017932 Glutamine amidotransferase type 2 domain YPC_1525 IPR035584 Amidophosphoribosyltransferase, N-terminal YPC_1525 IPR005854 Amidophosphoribosyltransferase YPC_1525 IPR029057 Phosphoribosyltransferase-like YPC_1526 IPR003382 Flavoprotein YPC_1526 IPR004507 Flavin prenyltransferase UbiX-like YPC_1526 IPR036551 Flavin prenyltransferase-like YPC_1529 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPC_1529 IPR018313 Solute-binding protein family 3, conserved site YPC_1529 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPC_1530 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPC_1530 IPR030199 Histidine transport system permease protein HisQ YPC_1530 IPR035906 MetI-like superfamily YPC_1530 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1531 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPC_1531 IPR035906 MetI-like superfamily YPC_1531 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1532 IPR003439 ABC transporter-like YPC_1532 IPR017871 ABC transporter, conserved site YPC_1532 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1532 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPC_1532 IPR003593 AAA+ ATPase domain YPC_1533 IPR036291 NAD(P)-binding domain superfamily YPC_1533 IPR010099 Epimerase family protein SDR39U1 YPC_1533 IPR013549 Domain of unknown function DUF1731 YPC_1533 IPR001509 NAD-dependent epimerase/dehydratase YPC_1535 IPR000979 Phosphodiesterase MJ0936/Vps29 YPC_1535 IPR020935 Phosphodiesterase YfcE, conserved site YPC_1535 IPR024654 Calcineurin-like phosphoesterase domain, lpxH-type YPC_1535 IPR041802 YfcE-like, metallophosphatase domain YPC_1535 IPR029052 Metallo-dependent phosphatase-like YPC_1537 IPR024195 NUDIX hydrolase, YfcD, predicted YPC_1537 IPR000086 NUDIX hydrolase domain YPC_1537 IPR015797 NUDIX hydrolase-like domain superfamily YPC_1538 IPR004703 Phosphotransferase system, sugar-specific permease component YPC_1539 IPR001207 Transposase, mutator type YPC_1542 IPR002178 PTS EIIA type-2 domain YPC_1542 IPR016152 Phosphotransferase/anion transporter YPC_1543 IPR000843 LacI-type HTH domain YPC_1543 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_1543 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPC_1543 IPR028082 Periplasmic binding protein-like I YPC_1545 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily YPC_1545 IPR042113 Phosphate acetyltransferase, domain 1 YPC_1545 IPR002505 Phosphate acetyl/butaryl transferase YPC_1545 IPR042112 Phosphate acetyltransferase, domain 2 YPC_1545 IPR010766 DRTGG YPC_1545 IPR016475 Phosphate acetyltransferase, bacteria YPC_1545 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1545 IPR004614 Phosphate acetyltransferase YPC_1547 IPR000890 Aliphatic acid kinase, short-chain YPC_1547 IPR004372 Acetate/propionate kinase YPC_1547 IPR023865 Aliphatic acid kinase, short-chain, conserved site YPC_1549 IPR007334 Uncharacterised protein family UPF0208 YPC_1550 IPR005587 Uncharacterised protein family UPF0304, YfbU YPC_1550 IPR023146 YfbU, alpha-helical bundle domain superfamily YPC_1550 IPR023145 YfbU, helix-hairpin domain superfamily YPC_1551 IPR006439 HAD hydrolase, subfamily IA YPC_1551 IPR036412 HAD-like superfamily YPC_1551 IPR023214 HAD superfamily YPC_1551 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPC_1551 IPR041492 Haloacid dehalogenase-like hydrolase YPC_1552 IPR004680 Citrate transporter-like domain YPC_1552 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YPC_1552 IPR006037 Regulator of K+ conductance, C-terminal YPC_1552 IPR031312 Sodium/sulphate symporter, conserved site YPC_1554 IPR022971 5'-deoxynucleotidase YfbR YPC_1554 IPR039356 Metal-dependent nucleoside 5'-monophosphatase YPC_1554 IPR003607 HD/PDEase domain YPC_1556 IPR015424 Pyridoxal phosphate-dependent transferase YPC_1556 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_1556 IPR004839 Aminotransferase, class I/classII YPC_1556 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_1558 IPR036390 Winged helix DNA-binding domain superfamily YPC_1558 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1558 IPR005119 LysR, substrate-binding YPC_1558 IPR000847 Transcription regulator HTH, LysR YPC_1560 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 YPC_1560 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily YPC_1560 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid YPC_1561 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit YPC_1561 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit YPC_1562 IPR010218 NADH dehydrogenase, subunit C YPC_1562 IPR023062 NADH dehydrogenase, subunit CD YPC_1562 IPR001135 NADH-quinone oxidoreductase, subunit D YPC_1562 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily YPC_1562 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily YPC_1562 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit YPC_1562 IPR029014 [NiFe]-hydrogenase, large subunit YPC_1562 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H YPC_1562 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site YPC_1563 IPR042128 NuoE domain YPC_1563 IPR002023 NADH-quinone oxidoreductase subunit E-like YPC_1563 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal YPC_1563 IPR036249 Thioredoxin-like superfamily YPC_1564 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site YPC_1564 IPR011537 NADH ubiquinone oxidoreductase, F subunit YPC_1564 IPR019554 Soluble ligand binding domain YPC_1564 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily YPC_1564 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain YPC_1564 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain YPC_1564 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily YPC_1565 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding YPC_1565 IPR010228 NADH:ubiquinone oxidoreductase, subunit G YPC_1565 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPC_1565 IPR006657 Molybdopterin dinucleotide-binding domain YPC_1565 IPR009010 Aspartate decarboxylase-like domain superfamily YPC_1565 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPC_1565 IPR036010 2Fe-2S ferredoxin-like superfamily YPC_1565 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site YPC_1565 IPR006656 Molybdopterin oxidoreductase YPC_1566 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site YPC_1566 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H YPC_1567 IPR010226 NADH-quinone oxidoreductase, chain I YPC_1567 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPC_1567 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_1568 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 YPC_1568 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ YPC_1569 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like YPC_1569 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K YPC_1570 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup YPC_1570 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 YPC_1570 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal YPC_1570 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit YPC_1571 IPR010227 NADH-quinone oxidoreductase, chain M/4 YPC_1571 IPR003918 NADH:ubiquinone oxidoreductase YPC_1571 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit YPC_1572 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 YPC_1572 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit YPC_1574 IPR037012 YhcH/YjgK/YiaL superfamily YPC_1574 IPR004375 YhcH/YjgK/YiaL family YPC_1575 IPR031322 Shikimate kinase/gluconokinase YPC_1575 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1575 IPR006001 Carbohydrate kinase, thermoresistant glucokinase YPC_1576 IPR002347 Short-chain dehydrogenase/reductase SDR YPC_1576 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPC_1576 IPR036291 NAD(P)-binding domain superfamily YPC_1580 IPR000843 LacI-type HTH domain YPC_1580 IPR028082 Periplasmic binding protein-like I YPC_1580 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_1582 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPC_1582 IPR036291 NAD(P)-binding domain superfamily YPC_1582 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPC_1584 IPR020846 Major facilitator superfamily domain YPC_1584 IPR011701 Major facilitator superfamily YPC_1584 IPR036259 MFS transporter superfamily YPC_1585 IPR038084 GlcG-like domain superfamily YPC_1585 IPR010371 Uncharacterised protein family UPF0303 YPC_1585 IPR005624 Haem-degrading YPC_1586 IPR037237 IlvD/EDD, N-terminal domain YPC_1586 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site YPC_1586 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase YPC_1586 IPR004786 6-phosphogluconate dehydratase YPC_1586 IPR042096 Dihydroxy-acid dehydratase, C-terminal YPC_1590 IPR010279 Inner membrane protein YqjD/ElaB YPC_1593 IPR005801 ADC synthase YPC_1593 IPR015890 Chorismate-utilising enzyme, C-terminal YPC_1593 IPR004561 Isochorismate synthase YPC_1593 IPR034681 Isochorismate synthase MenF YPC_1594 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPC_1594 IPR029061 Thiamin diphosphate-binding fold YPC_1594 IPR032264 Menaquinone biosynthesis protein MenD, middle domain YPC_1594 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPC_1594 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase YPC_1595 IPR029058 Alpha/Beta hydrolase fold YPC_1595 IPR000073 Alpha/beta hydrolase fold-1 YPC_1595 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase YPC_1596 IPR001753 Enoyl-CoA hydratase/isomerase YPC_1596 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPC_1596 IPR014748 Enoyl-CoA hydratase, C-terminal YPC_1596 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB YPC_1596 IPR029045 ClpP/crotonase-like domain superfamily YPC_1597 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPC_1597 IPR010196 o-Succinylbenzoate synthase, MenC type1 YPC_1597 IPR029065 Enolase C-terminal domain-like YPC_1597 IPR036849 Enolase-like, C-terminal domain superfamily YPC_1597 IPR029017 Enolase-like, N-terminal YPC_1598 IPR000873 AMP-dependent synthetase/ligase YPC_1598 IPR020845 AMP-binding, conserved site YPC_1598 IPR025110 AMP-binding enzyme, C-terminal domain YPC_1598 IPR010192 2-succinylbenzoate--CoA ligase YPC_1598 IPR042099 AMP-dependent synthetase-like superfamily YPC_1599 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily YPC_1599 IPR017459 Glycosyl transferase family 3, N-terminal domain YPC_1599 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily YPC_1602 IPR025543 Dodecin-like YPC_1602 IPR010854 Domain of unknown function DUF1471 YPC_1602 IPR036275 YdgH-like superfamily YPC_1603 IPR016909 Ribosomal RNA large subunit methyltransferase F YPC_1603 IPR010286 METTL16/RlmF family YPC_1603 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_1606 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_1606 IPR002611 IstB-like ATP-binding protein YPC_1606 IPR003593 AAA+ ATPase domain YPC_1606 IPR001270 ClpA/B family YPC_1606 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1607 IPR017894 HTH domain, IS21 transposase-type YPC_1607 IPR001584 Integrase, catalytic core YPC_1607 IPR006120 Resolvase, HTH domain YPC_1607 IPR012337 Ribonuclease H-like superfamily YPC_1607 IPR036397 Ribonuclease H superfamily YPC_1608 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPC_1608 IPR000700 PAS-associated, C-terminal YPC_1608 IPR004090 Chemotaxis methyl-accepting receptor YPC_1608 IPR035965 PAS domain superfamily YPC_1608 IPR013655 PAS fold-3 YPC_1608 IPR001610 PAC motif YPC_1608 IPR000014 PAS domain YPC_1609 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPC_1609 IPR003439 ABC transporter-like YPC_1609 IPR017871 ABC transporter, conserved site YPC_1609 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1609 IPR003593 AAA+ ATPase domain YPC_1610 IPR035906 MetI-like superfamily YPC_1610 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPC_1610 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1611 IPR001320 Ionotropic glutamate receptor YPC_1611 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPC_1611 IPR018313 Solute-binding protein family 3, conserved site YPC_1613 IPR008331 Ferritin/DPS protein domain YPC_1613 IPR009078 Ferritin-like superfamily YPC_1613 IPR012347 Ferritin-like YPC_1613 IPR023067 DNA protection during starvation protein, gammaproteobacteria YPC_1613 IPR002177 DNA-binding protein Dps YPC_1613 IPR023188 DNA-binding protein Dps, conserved site YPC_1617 IPR000620 EamA domain YPC_1619 IPR000758 Virulence-related outer membrane protein YPC_1619 IPR027385 Outer membrane protein beta-barrel domain YPC_1619 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPC_1623 IPR013154 Alcohol dehydrogenase, N-terminal YPC_1623 IPR011032 GroES-like superfamily YPC_1623 IPR036291 NAD(P)-binding domain superfamily YPC_1623 IPR013149 Alcohol dehydrogenase, C-terminal YPC_1623 IPR020843 Polyketide synthase, enoylreductase domain YPC_1624 IPR025997 Periplasmic binding protein YPC_1624 IPR028082 Periplasmic binding protein-like I YPC_1625 IPR003439 ABC transporter-like YPC_1625 IPR015861 ABC transporter, ribose import, RbsA YPC_1625 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1625 IPR003593 AAA+ ATPase domain YPC_1625 IPR017871 ABC transporter, conserved site YPC_1626 IPR001851 ABC transporter, permease YPC_1627 IPR000843 LacI-type HTH domain YPC_1627 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_1627 IPR028082 Periplasmic binding protein-like I YPC_1628 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1628 IPR036390 Winged helix DNA-binding domain superfamily YPC_1628 IPR000847 Transcription regulator HTH, LysR YPC_1628 IPR005119 LysR, substrate-binding YPC_1629 IPR024084 Isopropylmalate dehydrogenase-like domain YPC_1629 IPR011829 Tartrate dehydrogenase YPC_1629 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPC_1631 IPR000060 BCCT transporter family YPC_1631 IPR018093 BCCT transporter, conserved site YPC_1634 IPR036010 2Fe-2S ferredoxin-like superfamily YPC_1634 IPR039003 Carnitine monooxygenase reductase subunit YPC_1634 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPC_1634 IPR012675 Beta-grasp domain superfamily YPC_1634 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPC_1634 IPR017927 FAD-binding domain, ferredoxin reductase-type YPC_1634 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPC_1634 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPC_1634 IPR000951 Phthalate dioxygenase reductase YPC_1634 IPR017938 Riboflavin synthase-like beta-barrel YPC_1634 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPC_1635 IPR005565 Haemolysin activator HlyB, C-terminal YPC_1635 IPR027282 Two partner secretion pathway transporter YPC_1635 IPR013686 Polypeptide-transport-associated, ShlB-type YPC_1635 IPR035251 ShlB, POTRA domain YPC_1635 IPR034746 POTRA domain YPC_1636 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPC_1636 IPR024973 ESPR domain YPC_1636 IPR025157 Hemagglutinin repeat YPC_1636 IPR006914 VENN motif-containing domain YPC_1636 IPR012334 Pectin lyase fold YPC_1636 IPR008638 Filamentous haemagglutinin, N-terminal YPC_1636 IPR011050 Pectin lyase fold/virulence factor YPC_1637 IPR025157 Hemagglutinin repeat YPC_1637 IPR012334 Pectin lyase fold YPC_1637 IPR011050 Pectin lyase fold/virulence factor YPC_1637 IPR006914 VENN motif-containing domain YPC_1637 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPC_1637 IPR024973 ESPR domain YPC_1637 IPR008638 Filamentous haemagglutinin, N-terminal YPC_1640 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPC_1640 IPR012334 Pectin lyase fold YPC_1640 IPR006914 VENN motif-containing domain YPC_1640 IPR024973 ESPR domain YPC_1640 IPR011050 Pectin lyase fold/virulence factor YPC_1640 IPR025157 Hemagglutinin repeat YPC_1640 IPR008638 Filamentous haemagglutinin, N-terminal YPC_1645 IPR011050 Pectin lyase fold/virulence factor YPC_1645 IPR008638 Filamentous haemagglutinin, N-terminal YPC_1645 IPR025157 Hemagglutinin repeat YPC_1645 IPR028190 Novel toxin 21 YPC_1645 IPR008619 Filamentous haemagglutinin repeat YPC_1645 IPR038181 Novel toxin 21 superfamily YPC_1645 IPR012334 Pectin lyase fold YPC_1645 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPC_1645 IPR006914 VENN motif-containing domain YPC_1646 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPC_1646 IPR008619 Filamentous haemagglutinin repeat YPC_1646 IPR025157 Hemagglutinin repeat YPC_1646 IPR028190 Novel toxin 21 YPC_1646 IPR038181 Novel toxin 21 superfamily YPC_1646 IPR008638 Filamentous haemagglutinin, N-terminal YPC_1646 IPR011050 Pectin lyase fold/virulence factor YPC_1646 IPR006914 VENN motif-containing domain YPC_1646 IPR012334 Pectin lyase fold YPC_1648 IPR017871 ABC transporter, conserved site YPC_1648 IPR015855 ABC transporter, maltose/maltodextrin import, MalK YPC_1648 IPR003593 AAA+ ATPase domain YPC_1648 IPR003439 ABC transporter-like YPC_1648 IPR008995 Molybdate/tungstate binding, C-terminal YPC_1648 IPR040582 MalK, OB fold domain YPC_1648 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1649 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPC_1649 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPC_1649 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPC_1649 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPC_1649 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPC_1649 IPR005841 Alpha-D-phosphohexomutase superfamily YPC_1649 IPR016066 Alpha-D-phosphohexomutase, conserved site YPC_1649 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YPC_1650 IPR000843 LacI-type HTH domain YPC_1650 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_1650 IPR028082 Periplasmic binding protein-like I YPC_1652 IPR035906 MetI-like superfamily YPC_1652 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1653 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1653 IPR035906 MetI-like superfamily YPC_1654 IPR007184 Mannoside phosphorylase YPC_1654 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily YPC_1654 IPR028583 4-O-beta-D-mannosyl-D-glucose phosphorylase YPC_1658 IPR010920 LSM domain superfamily YPC_1658 IPR006685 Mechanosensitive ion channel MscS YPC_1658 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPC_1658 IPR030192 Miniconductance mechanosensitive channel YbdG YPC_1659 IPR019857 CRISPR-associated protein Cas1, YPEST subtype YPC_1659 IPR042211 CRISPR-associated endonuclease Cas1, N-terminal domain YPC_1659 IPR042206 CRISPR-associated endonuclease Cas1, C-terminal domain YPC_1659 IPR002729 CRISPR-associated protein Cas1 YPC_1660 IPR038257 CRISPR-associated Cas3-type HD domain superfamily YPC_1660 IPR013395 Helicase Cas3, CRISPR-associated, Yersinia-type YPC_1660 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1660 IPR006483 CRISPR-associated Cas3-type HD domain YPC_1661 IPR013397 CRISPR-associated protein Csy1 YPC_1662 IPR013398 CRISPR-associated protein Csy2 YPC_1663 IPR013399 CRISPR-associated protein Csy3 YPC_1664 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST YPC_1665 IPR020471 Aldo/keto reductase YPC_1665 IPR023210 NADP-dependent oxidoreductase domain YPC_1665 IPR036812 NADP-dependent oxidoreductase domain superfamily YPC_1668 IPR005829 Sugar transporter, conserved site YPC_1668 IPR005828 Major facilitator, sugar transporter-like YPC_1668 IPR020846 Major facilitator superfamily domain YPC_1668 IPR036259 MFS transporter superfamily YPC_1669 IPR036390 Winged helix DNA-binding domain superfamily YPC_1669 IPR000847 Transcription regulator HTH, LysR YPC_1669 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1669 IPR005119 LysR, substrate-binding YPC_1670 IPR016032 Signal transduction response regulator, C-terminal effector YPC_1670 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YPC_1670 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YPC_1670 IPR000792 Transcription regulator LuxR, C-terminal YPC_1670 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1671 IPR001690 Autoinducer synthase YPC_1671 IPR016181 Acyl-CoA N-acyltransferase YPC_1671 IPR018311 Autoinducer synthesis, conserved site YPC_1678 IPR002549 Transmembrane protein TqsA-like YPC_1680 IPR016032 Signal transduction response regulator, C-terminal effector YPC_1680 IPR001789 Signal transduction response regulator, receiver domain YPC_1680 IPR000792 Transcription regulator LuxR, C-terminal YPC_1681 IPR023493 N-methyl-L-tryptophan oxidase MTOX YPC_1681 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_1681 IPR006076 FAD dependent oxidoreductase YPC_1682 IPR001207 Transposase, mutator type YPC_1683 IPR025730 Biofilm regulator BssS YPC_1684 IPR036687 DinI-like superfamily YPC_1684 IPR010391 DNA damage-inducible protein DinI-like YPC_1685 IPR002195 Dihydroorotase, conserved site YPC_1685 IPR032466 Metal-dependent hydrolase YPC_1685 IPR004721 Dihydroorotase homodimeric type YPC_1685 IPR006680 Amidohydrolase-related YPC_1686 IPR011008 Dimeric alpha-beta barrel YPC_1686 IPR007138 Antibiotic biosynthesis monooxygenase domain YPC_1687 IPR001207 Transposase, mutator type YPC_1688 IPR004659 Ribonuclease E/G YPC_1688 IPR028878 Ribonuclease E YPC_1688 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G YPC_1688 IPR021968 Polyribonucleotide phosphorylase C-terminal YPC_1688 IPR012340 Nucleic acid-binding, OB-fold YPC_1688 IPR022967 RNA-binding domain, S1 YPC_1688 IPR003029 S1 domain YPC_1689 IPR006225 Pseudouridine synthase, RluC/RluD YPC_1689 IPR036986 RNA-binding S4 domain superfamily YPC_1689 IPR006145 Pseudouridine synthase, RsuA/RluA YPC_1689 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPC_1689 IPR002942 RNA-binding S4 domain YPC_1689 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPC_1690 IPR029001 Inosine triphosphate pyrophosphatase-like YPC_1690 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein YPC_1691 IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria YPC_1691 IPR003772 Large ribosomal RNA subunit accumulation protein YceD YPC_1692 IPR011332 Zinc-binding ribosomal protein YPC_1692 IPR002677 Ribosomal protein L32p YPC_1693 IPR003664 Fatty acid synthesis PlsX protein YPC_1693 IPR012281 Phospholipid biosynthesis protein, PlsX-like YPC_1694 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal YPC_1694 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPC_1694 IPR016039 Thiolase-like YPC_1694 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 YPC_1695 IPR024925 Malonyl CoA-acyl carrier protein transacylase YPC_1695 IPR001227 Acyl transferase domain superfamily YPC_1695 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPC_1695 IPR014043 Acyl transferase YPC_1695 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPC_1695 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type YPC_1696 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPC_1696 IPR002347 Short-chain dehydrogenase/reductase SDR YPC_1696 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YPC_1696 IPR036291 NAD(P)-binding domain superfamily YPC_1697 IPR003231 Acyl carrier protein (ACP) YPC_1697 IPR006162 Phosphopantetheine attachment site YPC_1697 IPR009081 Phosphopantetheine binding ACP domain YPC_1697 IPR036736 ACP-like superfamily YPC_1698 IPR018201 Beta-ketoacyl synthase, active site YPC_1698 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPC_1698 IPR016039 Thiolase-like YPC_1698 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPC_1698 IPR014030 Beta-ketoacyl synthase, N-terminal YPC_1698 IPR014031 Beta-ketoacyl synthase, C-terminal YPC_1698 IPR000794 Beta-ketoacyl synthase YPC_1701 IPR017824 Aminodeoxychorismate lyase, class IV YPC_1701 IPR036038 Aminotransferase-like, PLP-dependent enzymes YPC_1701 IPR018300 Aminotransferase, class IV, conserved site YPC_1701 IPR001544 Aminotransferase class IV YPC_1703 IPR003770 Endolytic murein transglycosylase YPC_1704 IPR018095 Thymidylate kinase, conserved site YPC_1704 IPR039430 Thymidylate kinase-like domain YPC_1704 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1704 IPR018094 Thymidylate kinase YPC_1705 IPR004622 DNA polymerase III, delta prime subunit YPC_1705 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPC_1705 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1705 IPR015199 DNA polymerase III, delta subunit, C-terminal YPC_1706 IPR032466 Metal-dependent hydrolase YPC_1706 IPR001130 TatD family YPC_1706 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPC_1706 IPR015991 Uncharacterised hydrolase TatD-type YPC_1707 IPR011299 PTS system glucose-specific IIBC component YPC_1707 IPR036878 Glucose permease domain IIB YPC_1707 IPR001996 Phosphotransferase system, IIB component, type 1 YPC_1707 IPR013013 Phosphotransferase system, EIIC component, type 1 YPC_1707 IPR003352 Phosphotransferase system, EIIC YPC_1707 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPC_1707 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component YPC_1710 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal YPC_1710 IPR036291 NAD(P)-binding domain superfamily YPC_1711 IPR019808 Histidine triad, conserved site YPC_1711 IPR001310 Histidine triad (HIT) protein YPC_1711 IPR011146 HIT-like domain YPC_1711 IPR036265 HIT-like superfamily YPC_1712 IPR038483 YcfL-like superfamily YPC_1712 IPR010824 Protein of unknown function DUF1425 YPC_1713 IPR014094 Penicillin-binding protein activator LpoB YPC_1713 IPR012640 Membrane lipoprotein, lipid attachment site YPC_1714 IPR014093 Thiamine kinase YPC_1714 IPR002575 Aminoglycoside phosphotransferase YPC_1714 IPR011009 Protein kinase-like domain superfamily YPC_1715 IPR019800 Glycoside hydrolase, family 3, active site YPC_1715 IPR001764 Glycoside hydrolase, family 3, N-terminal YPC_1715 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily YPC_1715 IPR017853 Glycoside hydrolase superfamily YPC_1715 IPR022956 Beta-hexosaminidase, bacterial YPC_1716 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YPC_1716 IPR022987 Uncharacterised protein family UPF0227 YPC_1716 IPR029058 Alpha/Beta hydrolase fold YPC_1717 IPR023753 FAD/NAD(P)-binding domain YPC_1717 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_1722 IPR001207 Transposase, mutator type YPC_1723 IPR008816 Glycine zipper 2TM domain YPC_1724 IPR011545 DEAD/DEAH box helicase domain YPC_1724 IPR003711 CarD-like/TRCF domain YPC_1724 IPR005118 Transcription-repair-coupling factor, C-terminal domain YPC_1724 IPR001650 Helicase, C-terminal YPC_1724 IPR004576 Transcription-repair coupling factor YPC_1724 IPR036101 CarD-like/TRCF domain superfamily YPC_1724 IPR041471 UvrB, interaction domain YPC_1724 IPR037235 TRCF-like, C-terminal domain YPC_1724 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_1724 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1726 IPR003838 ABC transporter permease protein domain YPC_1726 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E YPC_1726 IPR025857 MacB-like periplasmic core domain YPC_1727 IPR017871 ABC transporter, conserved site YPC_1727 IPR003593 AAA+ ATPase domain YPC_1727 IPR003439 ABC transporter-like YPC_1727 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1727 IPR015854 ABC transporter, lipoprotein release, LolD YPC_1727 IPR011924 Lipoprotein releasing system, ATP-binding protein YPC_1728 IPR025857 MacB-like periplasmic core domain YPC_1728 IPR011926 Lipoprotein-releasing system transmembrane protein LolE, gammaproteobacteria type YPC_1728 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E YPC_1728 IPR003838 ABC transporter permease protein domain YPC_1729 IPR000600 ROK family YPC_1730 IPR023505 N-acetyl-D-glucosamine kinase YPC_1730 IPR000600 ROK family YPC_1732 IPR026590 Sirtuin family, catalytic core domain YPC_1732 IPR026591 Sirtuin, catalytic core small domain superfamily YPC_1732 IPR003000 Sirtuin family YPC_1732 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPC_1732 IPR027546 Sirtuin, class III YPC_1733 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPC_1733 IPR036264 Bacterial exopeptidase dimerisation domain YPC_1733 IPR010161 Peptidase M20B, tripeptide aminopeptidase YPC_1733 IPR002933 Peptidase M20 YPC_1733 IPR011650 Peptidase M20, dimerisation domain YPC_1734 IPR003347 JmjC domain YPC_1734 IPR039994 JmjC domain-containing YPC_1735 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_1735 IPR015014 PhoQ Sensor YPC_1735 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_1735 IPR038429 PhoQ Sensor superfamily YPC_1735 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_1735 IPR003594 Histidine kinase/HSP90-like ATPase YPC_1735 IPR003660 HAMP domain YPC_1735 IPR005467 Histidine kinase domain YPC_1736 IPR001867 OmpR/PhoB-type DNA-binding domain YPC_1736 IPR001789 Signal transduction response regulator, receiver domain YPC_1736 IPR039420 Transcriptional regulatory protein WalR-like YPC_1736 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1736 IPR011006 CheY-like superfamily YPC_1738 IPR020557 Fumarate lyase, conserved site YPC_1738 IPR000362 Fumarate lyase family YPC_1738 IPR024083 Fumarase/histidase, N-terminal YPC_1738 IPR022761 Fumarate lyase, N-terminal YPC_1738 IPR008948 L-Aspartase-like YPC_1738 IPR004769 Adenylosuccinate lyase YPC_1738 IPR013539 Adenylosuccinate lyase PurB, C-terminal YPC_1739 IPR007451 High frequency lysogenization protein HflD YPC_1739 IPR035932 HflD-like superfamily YPC_1740 IPR004506 tRNA-specific 2-thiouridylase YPC_1740 IPR023382 Adenine nucleotide alpha hydrolase-like domains YPC_1740 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_1741 IPR015797 NUDIX hydrolase-like domain superfamily YPC_1741 IPR020476 NUDIX hydrolase YPC_1741 IPR000086 NUDIX hydrolase domain YPC_1741 IPR033713 Phosphatase NudJ YPC_1741 IPR020084 NUDIX hydrolase, conserved site YPC_1742 IPR006145 Pseudouridine synthase, RsuA/RluA YPC_1742 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPC_1742 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain YPC_1742 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPC_1742 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPC_1743 IPR024084 Isopropylmalate dehydrogenase-like domain YPC_1743 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPC_1743 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic YPC_1744 IPR028082 Periplasmic binding protein-like I YPC_1744 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPC_1744 IPR000843 LacI-type HTH domain YPC_1744 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_1746 IPR000014 PAS domain YPC_1746 IPR013655 PAS fold-3 YPC_1746 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPC_1746 IPR003660 HAMP domain YPC_1746 IPR004090 Chemotaxis methyl-accepting receptor YPC_1746 IPR035965 PAS domain superfamily YPC_1746 IPR001610 PAC motif YPC_1747 IPR008030 NmrA-like domain YPC_1747 IPR036291 NAD(P)-binding domain superfamily YPC_1748 IPR002577 Helix-turn-helix, HxlR type YPC_1748 IPR036390 Winged helix DNA-binding domain superfamily YPC_1748 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1752 IPR000560 Histidine phosphatase superfamily, clade-2 YPC_1752 IPR033379 Histidine acid phosphatase active site YPC_1752 IPR029033 Histidine phosphatase superfamily YPC_1753 IPR033379 Histidine acid phosphatase active site YPC_1753 IPR000560 Histidine phosphatase superfamily, clade-2 YPC_1753 IPR029033 Histidine phosphatase superfamily YPC_1755 IPR017704 Putative selenium-binding protein YdfZ YPC_1757 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPC_1757 IPR036390 Winged helix DNA-binding domain superfamily YPC_1757 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1757 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPC_1757 IPR011991 ArsR-like helix-turn-helix domain YPC_1757 IPR019888 Transcription regulator AsnC-type YPC_1757 IPR000485 AsnC-type HTH domain YPC_1757 IPR011008 Dimeric alpha-beta barrel YPC_1759 IPR019713 Inner membrane protein YlaC YPC_1760 IPR013968 Polyketide synthase, ketoreductase domain YPC_1760 IPR014030 Beta-ketoacyl synthase, N-terminal YPC_1760 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPC_1760 IPR032821 Ketoacyl-synthetase, C-terminal extension YPC_1760 IPR014031 Beta-ketoacyl synthase, C-terminal YPC_1760 IPR020843 Polyketide synthase, enoylreductase domain YPC_1760 IPR042104 Polyketide synthase, dehydratase domain superfamily YPC_1760 IPR020807 Polyketide synthase, dehydratase domain YPC_1760 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPC_1760 IPR036291 NAD(P)-binding domain superfamily YPC_1760 IPR018201 Beta-ketoacyl synthase, active site YPC_1760 IPR036736 ACP-like superfamily YPC_1760 IPR013154 Alcohol dehydrogenase, N-terminal YPC_1760 IPR013149 Alcohol dehydrogenase, C-terminal YPC_1760 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPC_1760 IPR014043 Acyl transferase YPC_1760 IPR009081 Phosphopantetheine binding ACP domain YPC_1760 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPC_1760 IPR011032 GroES-like superfamily YPC_1760 IPR016039 Thiolase-like YPC_1761 IPR008979 Galactose-binding-like domain superfamily YPC_1761 IPR011013 Galactose mutarotase-like domain superfamily YPC_1761 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily YPC_1761 IPR004199 Beta galactosidase small chain/ domain 5 YPC_1761 IPR032312 Beta-galactosidase, domain 4 YPC_1761 IPR017853 Glycoside hydrolase superfamily YPC_1761 IPR006104 Glycosyl hydrolases family 2, sugar binding domain YPC_1761 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich YPC_1761 IPR023230 Glycoside hydrolase, family 2, conserved site YPC_1761 IPR006103 Glycoside hydrolase family 2, catalytic domain YPC_1761 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase YPC_1761 IPR023232 Glycoside hydrolase, family 2, active site YPC_1761 IPR013783 Immunoglobulin-like fold YPC_1761 IPR014718 Glycoside hydrolase-type carbohydrate-binding YPC_1761 IPR006101 Glycoside hydrolase, family 2 YPC_1762 IPR012156 Cold shock, CspA YPC_1762 IPR011129 Cold shock domain YPC_1762 IPR019844 Cold-shock (CSD) domain YPC_1762 IPR002059 Cold-shock protein, DNA-binding YPC_1762 IPR012340 Nucleic acid-binding, OB-fold YPC_1763 IPR019717 Dextransucrase DSRB YPC_1766 IPR003416 MgtC/SapB/SrpB/YhiD family YPC_1767 IPR023299 P-type ATPase, cytoplasmic domain N YPC_1767 IPR008250 P-type ATPase, A domain superfamily YPC_1767 IPR036412 HAD-like superfamily YPC_1767 IPR023214 HAD superfamily YPC_1767 IPR006415 P-type ATPase, subfamily IIIB YPC_1767 IPR004014 Cation-transporting P-type ATPase, N-terminal YPC_1767 IPR001757 P-type ATPase YPC_1767 IPR006068 Cation-transporting P-type ATPase, C-terminal YPC_1767 IPR023298 P-type ATPase, transmembrane domain superfamily YPC_1767 IPR018303 P-type ATPase, phosphorylation site YPC_1768 IPR018303 P-type ATPase, phosphorylation site YPC_1768 IPR023299 P-type ATPase, cytoplasmic domain N YPC_1768 IPR004014 Cation-transporting P-type ATPase, N-terminal YPC_1768 IPR006068 Cation-transporting P-type ATPase, C-terminal YPC_1768 IPR023298 P-type ATPase, transmembrane domain superfamily YPC_1768 IPR008250 P-type ATPase, A domain superfamily YPC_1768 IPR036412 HAD-like superfamily YPC_1768 IPR023214 HAD superfamily YPC_1768 IPR006415 P-type ATPase, subfamily IIIB YPC_1768 IPR001757 P-type ATPase YPC_1771 IPR007944 Flagellar transcriptional activator FlhC YPC_1772 IPR002898 MotA/TolQ/ExbB proton channel YPC_1772 IPR022522 Flagellar motor stator, MotA YPC_1772 IPR000540 Flagellar motor protein MotA, conserved site YPC_1773 IPR025713 Motility protein B, N-terminal domain YPC_1773 IPR006665 OmpA-like domain YPC_1773 IPR036737 OmpA-like domain superfamily YPC_1774 IPR015162 CheY binding YPC_1774 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPC_1774 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_1774 IPR036641 HPT domain superfamily YPC_1774 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_1774 IPR005467 Histidine kinase domain YPC_1774 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_1774 IPR003594 Histidine kinase/HSP90-like ATPase YPC_1774 IPR035891 CheY-binding domain of CheA YPC_1774 IPR002545 CheW-like domain YPC_1774 IPR036061 CheW-like domain superfamily YPC_1774 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily YPC_1774 IPR004105 Histidine kinase CheA-like, homodimeric domain YPC_1775 IPR002545 CheW-like domain YPC_1775 IPR039315 Chemotaxis protein CheW YPC_1775 IPR036061 CheW-like domain superfamily YPC_1776 IPR011701 Major facilitator superfamily YPC_1776 IPR020846 Major facilitator superfamily domain YPC_1776 IPR036259 MFS transporter superfamily YPC_1777 IPR019897 RidA, conserved site YPC_1777 IPR006056 RidA family YPC_1777 IPR035959 RutC-like superfamily YPC_1777 IPR006175 YjgF/YER057c/UK114 family YPC_1779 IPR039446 Transcriptional regulator DauR-like YPC_1779 IPR013559 YheO-like YPC_1779 IPR039445 Transcriptional regulator DauR-like, HTH domain YPC_1780 IPR005546 Autotransporter beta-domain YPC_1780 IPR013425 Autotransporter-associated beta strand repeat YPC_1780 IPR006315 Outer membrane autotransporter barrel YPC_1780 IPR036709 Autotransporter beta-domain superfamily YPC_1780 IPR011050 Pectin lyase fold/virulence factor YPC_1780 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPC_1783 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPC_1783 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPC_1783 IPR003660 HAMP domain YPC_1783 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPC_1783 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPC_1783 IPR004090 Chemotaxis methyl-accepting receptor YPC_1784 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPC_1784 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPC_1784 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPC_1784 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPC_1784 IPR004090 Chemotaxis methyl-accepting receptor YPC_1784 IPR003660 HAMP domain YPC_1785 IPR000780 MCP methyltransferase, CheR-type YPC_1785 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal YPC_1785 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal YPC_1785 IPR026024 Chemotaxis protein methyltransferase CheR YPC_1785 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_1785 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily YPC_1786 IPR001789 Signal transduction response regulator, receiver domain YPC_1786 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type YPC_1786 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase YPC_1786 IPR011006 CheY-like superfamily YPC_1786 IPR035909 Methylesterase CheB, C-terminal YPC_1787 IPR011006 CheY-like superfamily YPC_1787 IPR001789 Signal transduction response regulator, receiver domain YPC_1788 IPR007439 Chemotaxis phosphatase, CheZ YPC_1791 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPC_1791 IPR036365 PGBD-like superfamily YPC_1791 IPR036366 PGBD superfamily YPC_1791 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily YPC_1792 IPR008640 Head domain of trimeric autotransporter adhesin YPC_1792 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPC_1792 IPR011049 Serralysin-like metalloprotease, C-terminal YPC_1792 IPR005594 YadA-like, C-terminal YPC_1792 IPR024973 ESPR domain YPC_1793 IPR008640 Head domain of trimeric autotransporter adhesin YPC_1793 IPR005594 YadA-like, C-terminal YPC_1793 IPR011049 Serralysin-like metalloprotease, C-terminal YPC_1793 IPR024973 ESPR domain YPC_1793 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPC_1795 IPR029066 PLP-binding barrel YPC_1795 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site YPC_1795 IPR001608 Alanine racemase, N-terminal YPC_1795 IPR011079 Alanine racemase, C-terminal YPC_1795 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPC_1795 IPR000821 Alanine racemase YPC_1800 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_1800 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1800 IPR003593 AAA+ ATPase domain YPC_1800 IPR002611 IstB-like ATP-binding protein YPC_1800 IPR001270 ClpA/B family YPC_1801 IPR036397 Ribonuclease H superfamily YPC_1801 IPR001584 Integrase, catalytic core YPC_1801 IPR006120 Resolvase, HTH domain YPC_1801 IPR012337 Ribonuclease H-like superfamily YPC_1801 IPR017894 HTH domain, IS21 transposase-type YPC_1802 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPC_1802 IPR039697 Iron-type alcohol dehydrogenase-like YPC_1802 IPR016161 Aldehyde/histidinol dehydrogenase YPC_1802 IPR016163 Aldehyde dehydrogenase, C-terminal YPC_1802 IPR016162 Aldehyde dehydrogenase, N-terminal YPC_1802 IPR015590 Aldehyde dehydrogenase domain YPC_1802 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase YPC_1802 IPR034789 Bifunctional aldehyde-alcohol dehydrogenase, C-terminal domain YPC_1802 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YPC_1803 IPR002771 Multiple antibiotic resistance (MarC)-related YPC_1804 IPR030678 Peptide/nickel binding protein, MppA-type YPC_1804 IPR000914 Solute-binding protein family 5 domain YPC_1804 IPR023765 Solute-binding protein family 5, conserved site YPC_1804 IPR039424 Solute-binding protein family 5 YPC_1805 IPR035906 MetI-like superfamily YPC_1805 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1806 IPR035906 MetI-like superfamily YPC_1806 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPC_1806 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1807 IPR003439 ABC transporter-like YPC_1807 IPR003593 AAA+ ATPase domain YPC_1807 IPR017871 ABC transporter, conserved site YPC_1807 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPC_1807 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1808 IPR003593 AAA+ ATPase domain YPC_1808 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1808 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPC_1808 IPR017871 ABC transporter, conserved site YPC_1808 IPR003439 ABC transporter-like YPC_1810 IPR036763 Putative dsDNA mimic superfamily YPC_1810 IPR007376 dsDNA mimic, putative YPC_1811 IPR022924 Cardiolipin synthase YPC_1811 IPR030840 Cardiolipin synthase A YPC_1811 IPR001736 Phospholipase D/Transphosphatidylase YPC_1811 IPR027379 Cardiolipin synthase N-terminal YPC_1811 IPR025202 Phospholipase D-like domain YPC_1814 IPR000758 Virulence-related outer membrane protein YPC_1814 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPC_1814 IPR027385 Outer membrane protein beta-barrel domain YPC_1818 IPR011008 Dimeric alpha-beta barrel YPC_1818 IPR005545 YCII-related YPC_1819 IPR037682 TonB, C-terminal YPC_1819 IPR006260 TonB/TolA, C-terminal YPC_1819 IPR003538 Gram-negative bacterial TonB protein YPC_1820 IPR001207 Transposase, mutator type YPC_1821 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain YPC_1821 IPR029069 HotDog domain superfamily YPC_1821 IPR006683 Thioesterase domain YPC_1821 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase YPC_1822 IPR006008 Intracellular septation protein A YPC_1826 IPR009627 Uncharacterised protein family UPF0259 YPC_1828 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPC_1828 IPR005618 Outer membrane protein, OmpW YPC_1831 IPR013785 Aldolase-type TIM barrel YPC_1831 IPR011060 Ribulose-phosphate binding barrel YPC_1831 IPR018204 Tryptophan synthase, alpha chain, active site YPC_1831 IPR002028 Tryptophan synthase, alpha chain YPC_1832 IPR023026 Tryptophan synthase beta chain/beta chain-like YPC_1832 IPR001926 Pyridoxal-phosphate dependent enzyme YPC_1832 IPR006654 Tryptophan synthase, beta chain YPC_1832 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPC_1832 IPR006653 Tryptophan synthase, beta chain, conserved site YPC_1833 IPR011060 Ribulose-phosphate binding barrel YPC_1833 IPR013785 Aldolase-type TIM barrel YPC_1833 IPR013798 Indole-3-glycerol phosphate synthase YPC_1833 IPR001468 Indole-3-glycerol phosphate synthase, conserved site YPC_1833 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) YPC_1834 IPR005940 Anthranilate phosphoribosyl transferase YPC_1834 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily YPC_1834 IPR000312 Glycosyl transferase, family 3 YPC_1834 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily YPC_1834 IPR017459 Glycosyl transferase family 3, N-terminal domain YPC_1835 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain YPC_1835 IPR029062 Class I glutamine amidotransferase-like YPC_1835 IPR017926 Glutamine amidotransferase YPC_1836 IPR015890 Chorismate-utilising enzyme, C-terminal YPC_1836 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial YPC_1836 IPR006805 Anthranilate synthase component I, N-terminal YPC_1836 IPR019999 Anthranilate synthase component I-like YPC_1836 IPR005801 ADC synthase YPC_1838 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPC_1838 IPR004013 PHP domain YPC_1838 IPR016195 Polymerase/histidinol phosphatase-like YPC_1840 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YPC_1840 IPR006070 YrdC-like domain YPC_1841 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPC_1841 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPC_1841 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPC_1841 IPR002942 RNA-binding S4 domain YPC_1841 IPR036986 RNA-binding S4 domain superfamily YPC_1841 IPR006145 Pseudouridine synthase, RsuA/RluA YPC_1842 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR YPC_1842 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1843 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPC_1843 IPR002347 Short-chain dehydrogenase/reductase SDR YPC_1843 IPR036291 NAD(P)-binding domain superfamily YPC_1844 IPR013703 Peptidase S49, N-terminal proteobacteria YPC_1844 IPR002142 Peptidase S49 YPC_1844 IPR029045 ClpP/crotonase-like domain superfamily YPC_1846 IPR019633 Protein of unknown function DUF2498 YPC_1846 IPR038191 YciN superfamily YPC_1848 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YPC_1848 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YPC_1848 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YPC_1848 IPR023405 DNA topoisomerase, type IA, core domain YPC_1848 IPR034149 DNA topoisomerase 1, TOPRIM domain YPC_1848 IPR006171 TOPRIM domain YPC_1848 IPR005733 DNA topoisomerase I, bacterial-type YPC_1848 IPR003602 DNA topoisomerase, type IA, DNA-binding domain YPC_1848 IPR013497 DNA topoisomerase, type IA, central YPC_1848 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type YPC_1848 IPR028612 DNA topoisomerase I, type IA YPC_1848 IPR000380 DNA topoisomerase, type IA YPC_1848 IPR023406 DNA topoisomerase, type IA, active site YPC_1848 IPR013498 DNA topoisomerase, type IA, zn finger YPC_1848 IPR003601 DNA topoisomerase, type IA, domain 2 YPC_1849 IPR036390 Winged helix DNA-binding domain superfamily YPC_1849 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1849 IPR000847 Transcription regulator HTH, LysR YPC_1849 IPR005119 LysR, substrate-binding YPC_1851 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain YPC_1851 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain YPC_1851 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPC_1851 IPR036008 Aconitase, iron-sulfur domain YPC_1851 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPC_1851 IPR006249 Aconitase/Iron-responsive element-binding protein 2 YPC_1851 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPC_1852 IPR032677 GTP cyclohydrolase II YPC_1852 IPR036144 RibA-like superfamily YPC_1852 IPR000926 GTP cyclohydrolase II, RibA YPC_1853 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPC_1853 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YPC_1854 IPR010445 Lipopolysaccharide assembly protein A domain YPC_1854 IPR032906 Lipopolysaccharide assembly protein A YPC_1855 IPR030865 Lipopolysaccharide assembly protein B YPC_1855 IPR041166 LapB, rubredoxin metal binding domain YPC_1855 IPR013026 Tetratricopeptide repeat-containing domain YPC_1855 IPR011990 Tetratricopeptide-like helical domain superfamily YPC_1855 IPR019734 Tetratricopeptide repeat YPC_1857 IPR013785 Aldolase-type TIM barrel YPC_1857 IPR014732 Orotidine 5'-phosphate decarboxylase YPC_1857 IPR018089 Orotidine 5'-phosphate decarboxylase, active site YPC_1857 IPR001754 Orotidine 5'-phosphate decarboxylase domain YPC_1857 IPR011060 Ribulose-phosphate binding barrel YPC_1858 IPR005872 Archaeal/bacterial translation initiation factor SUI1 YPC_1858 IPR036877 SUI1 domain superfamily YPC_1858 IPR001950 SUI1 domain YPC_1859 IPR008816 Glycine zipper 2TM domain YPC_1860 IPR001303 Class II aldolase/adducin N-terminal YPC_1860 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPC_1860 IPR033748 L-ribulose-5-phosphate 4-epimerase AraD YPC_1860 IPR004661 L-ribulose-5-phosphate 4-epimerase YPC_1862 IPR013785 Aldolase-type TIM barrel YPC_1862 IPR023001 Fructose-6-phosphate aldolase YPC_1862 IPR001585 Transaldolase/Fructose-6-phosphate aldolase YPC_1862 IPR033919 Transaldolase/Fructose-6-phosphate aldolase, archaeal/bacterial YPC_1862 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase YPC_1862 IPR018225 Transaldolase, active site YPC_1863 IPR007423 Selenoprotein, putative YPC_1864 IPR003706 CstA, N-terminal domain YPC_1864 IPR025299 CstA, C-terminal domain YPC_1865 IPR012340 Nucleic acid-binding, OB-fold YPC_1865 IPR001900 Ribonuclease II/R YPC_1865 IPR011804 Ribonuclease II YPC_1865 IPR013223 Ribonuclease B, N-terminal OB domain YPC_1865 IPR011129 Cold shock domain YPC_1865 IPR004476 Ribonuclease II/ribonuclease R YPC_1865 IPR040476 RNase II/RNase R, cold shock domain YPC_1865 IPR003029 S1 domain YPC_1865 IPR022966 Ribonuclease II/R, conserved site YPC_1866 IPR011701 Major facilitator superfamily YPC_1866 IPR020846 Major facilitator superfamily domain YPC_1866 IPR036259 MFS transporter superfamily YPC_1867 IPR036291 NAD(P)-binding domain superfamily YPC_1867 IPR001509 NAD-dependent epimerase/dehydratase YPC_1868 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif YPC_1868 IPR000445 Helix-hairpin-helix motif YPC_1868 IPR004035 Endonuclease III, iron-sulphur binding site YPC_1868 IPR011257 DNA glycosylase YPC_1868 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal YPC_1868 IPR005759 Endonuclease III YPC_1868 IPR003265 HhH-GPD domain YPC_1868 IPR004036 Endonuclease III-like, conserved site-2 YPC_1871 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D YPC_1871 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD YPC_1872 IPR009057 Homeobox-like domain superfamily YPC_1872 IPR018060 DNA binding HTH domain, AraC-type YPC_1872 IPR010499 Bacterial transcription activator, effector binding YPC_1872 IPR020449 Transcription regulator HTH, AraC- type YPC_1872 IPR011256 Regulatory factor, effector binding domain superfamily YPC_1872 IPR029442 GyrI-like small molecule binding domain YPC_1872 IPR018062 HTH domain AraC-type, conserved site YPC_1873 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_1873 IPR026902 RnfC Barrel sandwich hybrid domain YPC_1873 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPC_1873 IPR009051 Alpha-helical ferredoxin YPC_1873 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily YPC_1873 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain YPC_1873 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC YPC_1873 IPR019554 Soluble ligand binding domain YPC_1875 IPR007202 4Fe-4S domain YPC_1875 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPC_1875 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_1875 IPR011005 Dihydropteroate synthase-like YPC_1875 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria YPC_1875 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB YPC_1876 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA YPC_1876 IPR003667 NqrDE/RnfAE YPC_1877 IPR019690 Protein of unknown function DUF2569 YPC_1879 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1879 IPR003593 AAA+ ATPase domain YPC_1879 IPR039421 Type I protein exporter YPC_1879 IPR010132 ATPase, type I secretion system, HlyB YPC_1879 IPR011527 ABC transporter type 1, transmembrane domain YPC_1879 IPR003439 ABC transporter-like YPC_1879 IPR017871 ABC transporter, conserved site YPC_1879 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPC_1879 IPR039395 Peptidase C39-like A YPC_1879 IPR005074 Peptidase C39, bacteriocin processing YPC_1880 IPR039421 Type I protein exporter YPC_1880 IPR010132 ATPase, type I secretion system, HlyB YPC_1880 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1880 IPR005074 Peptidase C39, bacteriocin processing YPC_1880 IPR039395 Peptidase C39-like A YPC_1880 IPR017871 ABC transporter, conserved site YPC_1880 IPR003439 ABC transporter-like YPC_1880 IPR003593 AAA+ ATPase domain YPC_1880 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPC_1880 IPR011527 ABC transporter type 1, transmembrane domain YPC_1881 IPR006144 Secretion protein HlyD, conserved site YPC_1881 IPR010129 Type I secretion membrane fusion protein, HlyD family YPC_1881 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPC_1882 IPR006144 Secretion protein HlyD, conserved site YPC_1882 IPR010129 Type I secretion membrane fusion protein, HlyD family YPC_1883 IPR005074 Peptidase C39, bacteriocin processing YPC_1883 IPR039421 Type I protein exporter YPC_1883 IPR039395 Peptidase C39-like A YPC_1883 IPR003439 ABC transporter-like YPC_1883 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPC_1883 IPR017871 ABC transporter, conserved site YPC_1883 IPR003593 AAA+ ATPase domain YPC_1883 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1883 IPR010132 ATPase, type I secretion system, HlyB YPC_1883 IPR011527 ABC transporter type 1, transmembrane domain YPC_1884 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily YPC_1884 IPR003762 L-arabinose isomerase YPC_1884 IPR024664 L-arabinose isomerase, C-terminal YPC_1884 IPR038583 L-arabinose isomerase, N-terminal domain superfamily YPC_1884 IPR004216 L-fucose/L-arabinose isomerase, C-terminal YPC_1885 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPC_1885 IPR005929 Ribulokinase YPC_1886 IPR028082 Periplasmic binding protein-like I YPC_1886 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPC_1886 IPR026266 L-arabinose-binding periplasmic protein YPC_1887 IPR003593 AAA+ ATPase domain YPC_1887 IPR003439 ABC transporter-like YPC_1887 IPR017871 ABC transporter, conserved site YPC_1887 IPR017917 ABC transporter, arabinose import, ATP-binding protein, AraG YPC_1887 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1888 IPR001851 ABC transporter, permease YPC_1889 IPR003313 AraC-type arabinose-binding/dimerisation domain YPC_1889 IPR009057 Homeobox-like domain superfamily YPC_1889 IPR037923 Transcription regulator HTH-like YPC_1889 IPR018060 DNA binding HTH domain, AraC-type YPC_1889 IPR018062 HTH domain AraC-type, conserved site YPC_1889 IPR020449 Transcription regulator HTH, AraC- type YPC_1890 IPR004104 Oxidoreductase, C-terminal YPC_1890 IPR000683 Oxidoreductase, N-terminal YPC_1890 IPR036291 NAD(P)-binding domain superfamily YPC_1891 IPR016833 Putative sodium bile acid cotransporter YPC_1891 IPR038770 Sodium/solute symporter superfamily YPC_1894 IPR010352 Protein of unknown function DUF945 YPC_1895 IPR018050 Phosphomannose isomerase, type I, conserved site YPC_1895 IPR001250 Mannose-6-phosphate isomerase, type I YPC_1895 IPR016305 Mannose-6-phosphate isomerase YPC_1895 IPR014710 RmlC-like jelly roll fold YPC_1895 IPR011051 RmlC-like cupin domain superfamily YPC_1896 IPR022761 Fumarate lyase, N-terminal YPC_1896 IPR000362 Fumarate lyase family YPC_1896 IPR020557 Fumarate lyase, conserved site YPC_1896 IPR008948 L-Aspartase-like YPC_1896 IPR005677 Fumarate hydratase, class II YPC_1896 IPR018951 Fumarase C, C-terminal YPC_1896 IPR024083 Fumarase/histidase, N-terminal YPC_1897 IPR036384 Replication terminator Tus superfamily YPC_1897 IPR036381 Replication terminator Tus, domain 1 YPC_1897 IPR008865 DNA replication terminus site-binding protein YPC_1898 IPR005829 Sugar transporter, conserved site YPC_1898 IPR020846 Major facilitator superfamily domain YPC_1898 IPR036259 MFS transporter superfamily YPC_1898 IPR011701 Major facilitator superfamily YPC_1899 IPR036390 Winged helix DNA-binding domain superfamily YPC_1899 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1899 IPR000847 Transcription regulator HTH, LysR YPC_1899 IPR005119 LysR, substrate-binding YPC_1900 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1900 IPR000600 ROK family YPC_1900 IPR036390 Winged helix DNA-binding domain superfamily YPC_1902 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1902 IPR004472 Dethiobiotin synthase BioD YPC_1903 IPR023790 Chloride channel, voltage-gated, ClcB YPC_1903 IPR001807 Chloride channel, voltage gated YPC_1903 IPR014743 Chloride channel, core YPC_1904 IPR028082 Periplasmic binding protein-like I YPC_1904 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_1904 IPR000843 LacI-type HTH domain YPC_1906 IPR028082 Periplasmic binding protein-like I YPC_1906 IPR025997 Periplasmic binding protein YPC_1907 IPR015168 SsuA/THI5-like YPC_1907 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPC_1907 IPR010067 Aliphatic sulfonates-binding protein YPC_1908 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1908 IPR035906 MetI-like superfamily YPC_1909 IPR013283 RLI1 YPC_1909 IPR003593 AAA+ ATPase domain YPC_1909 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1909 IPR003439 ABC transporter-like YPC_1910 IPR011271 AMP nucleosidase YPC_1910 IPR018953 AMP nucleoside phosphorylase, N-terminal YPC_1910 IPR000845 Nucleoside phosphorylase domain YPC_1910 IPR035994 Nucleoside phosphorylase superfamily YPC_1910 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily YPC_1919 IPR039557 AHAS, ACT domain YPC_1919 IPR004789 Acetolactate synthase, small subunit YPC_1919 IPR002912 ACT domain YPC_1920 IPR041492 Haloacid dehalogenase-like hydrolase YPC_1920 IPR036412 HAD-like superfamily YPC_1920 IPR006439 HAD hydrolase, subfamily IA YPC_1920 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB YPC_1920 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPC_1920 IPR023214 HAD superfamily YPC_1922 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPC_1922 IPR018299 Alkaline phosphatase, active site YPC_1922 IPR001952 Alkaline phosphatase YPC_1923 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPC_1923 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain YPC_1923 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain YPC_1923 IPR023546 Methylated-DNA--protein-cysteine methyltransferase YPC_1923 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily YPC_1923 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1923 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site YPC_1924 IPR012318 Crp-type HTH domain YPC_1924 IPR018490 Cyclic nucleotide-binding-like YPC_1924 IPR014710 RmlC-like jelly roll fold YPC_1924 IPR018335 Transcription regulator HTH, Crp-type, conserved site YPC_1924 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1924 IPR036390 Winged helix DNA-binding domain superfamily YPC_1924 IPR000595 Cyclic nucleotide-binding domain YPC_1925 IPR006016 UspA YPC_1928 IPR034300 NADP transhydrogenase beta-like domain YPC_1928 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPC_1928 IPR012136 NADP transhydrogenase, beta subunit YPC_1929 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 YPC_1929 IPR036291 NAD(P)-binding domain superfamily YPC_1929 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain YPC_1929 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal YPC_1929 IPR026255 NAD(P) transhydrogenase, alpha subunit YPC_1929 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 YPC_1929 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal YPC_1931 IPR036275 YdgH-like superfamily YPC_1931 IPR025539 YdgH protein YPC_1931 IPR025543 Dodecin-like YPC_1931 IPR010854 Domain of unknown function DUF1471 YPC_1932 IPR004754 Amino acid antiporter YPC_1932 IPR002293 Amino acid/polyamine transporter I YPC_1934 IPR011006 CheY-like superfamily YPC_1934 IPR001867 OmpR/PhoB-type DNA-binding domain YPC_1934 IPR016032 Signal transduction response regulator, C-terminal effector YPC_1934 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1934 IPR039420 Transcriptional regulatory protein WalR-like YPC_1934 IPR001789 Signal transduction response regulator, receiver domain YPC_1935 IPR003594 Histidine kinase/HSP90-like ATPase YPC_1935 IPR003660 HAMP domain YPC_1935 IPR005467 Histidine kinase domain YPC_1935 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_1935 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_1935 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_1935 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_1936 IPR001333 Peptidase M32, carboxypeptidase Taq YPC_1939 IPR041508 Toxin complex C-like repeat YPC_1939 IPR025968 YwqJ-like deaminase YPC_1939 IPR022385 Rhs repeat-associated core YPC_1943 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPC_1943 IPR016174 Di-haem cytochrome, transmembrane YPC_1948 IPR008256 Peptidase S1B YPC_1948 IPR009003 Peptidase S1, PA clan YPC_1948 IPR001254 Serine proteases, trypsin domain YPC_1948 IPR033116 Serine proteases, trypsin family, serine active site YPC_1948 IPR018114 Serine proteases, trypsin family, histidine active site YPC_1951 IPR011545 DEAD/DEAH box helicase domain YPC_1951 IPR011709 Domain of unknown function DUF1605 YPC_1951 IPR007502 Helicase-associated domain YPC_1951 IPR003593 AAA+ ATPase domain YPC_1951 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_1951 IPR010222 RNA helicase HrpA YPC_1951 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1951 IPR001650 Helicase, C-terminal YPC_1951 IPR024590 RNA helicase HrpA, C-terminal YPC_1952 IPR023048 NADH-azoreductase, FMN-dependent YPC_1952 IPR029039 Flavoprotein-like superfamily YPC_1952 IPR003680 Flavodoxin-like fold YPC_1953 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_1953 IPR007324 Sugar-binding domain, putative YPC_1953 IPR012318 Crp-type HTH domain YPC_1953 IPR037171 NagB/RpiA transferase-like YPC_1954 IPR013131 Mannitol dehydrogenase, N-terminal YPC_1954 IPR013118 Mannitol dehydrogenase, C-terminal YPC_1954 IPR000669 Mannitol dehydrogenase YPC_1954 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPC_1954 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPC_1954 IPR036291 NAD(P)-binding domain superfamily YPC_1955 IPR008309 Uncharacterised conserved protein UCP025560 YPC_1956 IPR025985 YnbE-like lipoprotein YPC_1957 IPR021730 Dicarboxylate transport YPC_1958 IPR036291 NAD(P)-binding domain superfamily YPC_1958 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPC_1958 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPC_1958 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPC_1958 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPC_1959 IPR038670 HslJ-like superfamily YPC_1959 IPR005184 Domain of unknown function DUF306, Meta/HslJ YPC_1960 IPR005590 Protein of unknown function DUF333 YPC_1961 IPR003416 MgtC/SapB/SrpB/YhiD family YPC_1962 IPR000390 Small multidrug resistance protein family YPC_1963 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain YPC_1963 IPR011895 Pyruvate-flavodoxin oxidoreductase YPC_1963 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain YPC_1963 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily YPC_1963 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II YPC_1963 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain YPC_1963 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPC_1963 IPR029061 Thiamin diphosphate-binding fold YPC_1963 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPC_1963 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal YPC_1963 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_1963 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPC_1964 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_1964 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal YPC_1964 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase YPC_1964 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type YPC_1965 IPR013830 SGNH hydrolase-type esterase domain YPC_1965 IPR029058 Alpha/Beta hydrolase fold YPC_1965 IPR036514 SGNH hydrolase superfamily YPC_1965 IPR013094 Alpha/beta hydrolase fold-3 YPC_1968 IPR023714 Zinc transport protein ZntB YPC_1968 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB YPC_1969 IPR030678 Peptide/nickel binding protein, MppA-type YPC_1969 IPR039424 Solute-binding protein family 5 YPC_1969 IPR023765 Solute-binding protein family 5, conserved site YPC_1969 IPR000914 Solute-binding protein family 5 domain YPC_1970 IPR000834 Peptidase M14, carboxypeptidase A YPC_1971 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site YPC_1971 IPR029065 Enolase C-terminal domain-like YPC_1971 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YPC_1971 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPC_1971 IPR029017 Enolase-like, N-terminal YPC_1971 IPR036849 Enolase-like, C-terminal domain superfamily YPC_1971 IPR034603 Dipeptide epimerase YPC_1972 IPR013740 Redoxin YPC_1972 IPR018219 Thiol peroxidase conserved site YPC_1972 IPR036249 Thioredoxin-like superfamily YPC_1972 IPR002065 Thiol peroxidase Tpx YPC_1972 IPR013766 Thioredoxin domain YPC_1974 IPR002686 Transposase IS200-like YPC_1974 IPR036515 Transposase IS200-like superfamily YPC_1975 IPR025944 Sigma-54 interaction domain, conserved site YPC_1975 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1975 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPC_1975 IPR000014 PAS domain YPC_1975 IPR035965 PAS domain superfamily YPC_1975 IPR003593 AAA+ ATPase domain YPC_1975 IPR002912 ACT domain YPC_1975 IPR009057 Homeobox-like domain superfamily YPC_1975 IPR030828 TyrR family, helix-turn-helix domain YPC_1975 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPC_1975 IPR002078 RNA polymerase sigma factor 54 interaction domain YPC_1978 IPR006507 Uncharacterised protein family UPF0283 YPC_1978 IPR021147 Protein of unknown function DUF697 YPC_1979 IPR007413 Protein of unknown function DUF463, YcjX-like protein YPC_1981 IPR007168 Phage shock protein, PspC, N-terminal YPC_1981 IPR014320 Phage shock protein, PspC YPC_1982 IPR009554 Phage shock protein B YPC_1983 IPR014319 Phage shock protein, PspA YPC_1983 IPR007157 PspA/IM30 YPC_1984 IPR003593 AAA+ ATPase domain YPC_1984 IPR014317 Transcription activator PspF YPC_1984 IPR025944 Sigma-54 interaction domain, conserved site YPC_1984 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPC_1984 IPR002078 RNA polymerase sigma factor 54 interaction domain YPC_1984 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_1984 IPR002197 DNA binding HTH domain, Fis-type YPC_1984 IPR009057 Homeobox-like domain superfamily YPC_1987 IPR039424 Solute-binding protein family 5 YPC_1987 IPR023765 Solute-binding protein family 5, conserved site YPC_1987 IPR000914 Solute-binding protein family 5 domain YPC_1987 IPR030678 Peptide/nickel binding protein, MppA-type YPC_1988 IPR035906 MetI-like superfamily YPC_1988 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1989 IPR035906 MetI-like superfamily YPC_1989 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPC_1989 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_1992 IPR029032 AhpD-like YPC_1994 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A YPC_1994 IPR005279 Dipeptide/tripeptide permease YPC_1994 IPR036259 MFS transporter superfamily YPC_1994 IPR000109 Proton-dependent oligopeptide transporter family YPC_1994 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site YPC_1995 IPR006977 Yip1 domain YPC_1996 IPR020317 Uncharacterised protein family YjbD YPC_1997 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPC_1997 IPR040079 Glutathione Transferase family YPC_1997 IPR004045 Glutathione S-transferase, N-terminal YPC_1997 IPR004046 Glutathione S-transferase, C-terminal YPC_1997 IPR010987 Glutathione S-transferase, C-terminal-like YPC_1997 IPR036249 Thioredoxin-like superfamily YPC_1998 IPR004625 Pyridoxine kinase YPC_1998 IPR023685 Pyridoxal kinase PdxY YPC_1998 IPR029056 Ribokinase-like YPC_1998 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase YPC_1999 IPR024088 Tyrosine-tRNA ligase, bacterial-type YPC_1999 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 YPC_1999 IPR002307 Tyrosine-tRNA ligase YPC_1999 IPR036986 RNA-binding S4 domain superfamily YPC_1999 IPR002942 RNA-binding S4 domain YPC_1999 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_1999 IPR002305 Aminoacyl-tRNA synthetase, class Ic YPC_1999 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPC_2000 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal YPC_2000 IPR000659 Pyridoxamine 5'-phosphate oxidase YPC_2000 IPR012349 FMN-binding split barrel YPC_2000 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative YPC_2000 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site YPC_2001 IPR036328 C-type lysozyme inhibitor superfamily YPC_2001 IPR018660 C-type lysozyme inhibitor YPC_2002 IPR005338 Anhydro-N-acetylmuramic acid kinase YPC_2004 IPR008816 Glycine zipper 2TM domain YPC_2005 IPR000835 MarR-type HTH domain YPC_2005 IPR023071 Transcriptional regulator, SlyA YPC_2005 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2005 IPR036390 Winged helix DNA-binding domain superfamily YPC_2005 IPR023187 Transcriptional regulator MarR-type, conserved site YPC_2006 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPC_2006 IPR012549 Phosphoethanolamine transferase, N-terminal YPC_2006 IPR040423 Phosphoethanolamine transferase YPC_2006 IPR000917 Sulfatase, N-terminal YPC_2007 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPC_2007 IPR011075 Tetracyclin repressor-like, C-terminal domain YPC_2007 IPR001647 DNA-binding HTH domain, TetR-type YPC_2007 IPR009057 Homeobox-like domain superfamily YPC_2009 IPR013785 Aldolase-type TIM barrel YPC_2009 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPC_2010 IPR025968 YwqJ-like deaminase YPC_2010 IPR041508 Toxin complex C-like repeat YPC_2010 IPR022385 Rhs repeat-associated core YPC_2011 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YPC_2011 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPC_2011 IPR037523 Vicinal oxygen chelate (VOC) domain YPC_2011 IPR018146 Glyoxalase I, conserved site YPC_2011 IPR004361 Glyoxalase I YPC_2012 IPR012337 Ribonuclease H-like superfamily YPC_2012 IPR005987 Ribonuclease T YPC_2012 IPR013520 Exonuclease, RNase T/DNA polymerase III YPC_2012 IPR036397 Ribonuclease H superfamily YPC_2014 IPR014434 Monothiol glutaredoxin YPC_2014 IPR002109 Glutaredoxin YPC_2014 IPR036249 Thioredoxin-like superfamily YPC_2014 IPR033658 Glutaredoxin, PICOT-like YPC_2014 IPR004480 Monothiol glutaredoxin-related YPC_2016 IPR000064 Endopeptidase, NLPC/P60 domain YPC_2016 IPR038765 Papain-like cysteine peptidase superfamily YPC_2017 IPR001189 Manganese/iron superoxide dismutase YPC_2017 IPR019833 Manganese/iron superoxide dismutase, binding site YPC_2017 IPR019832 Manganese/iron superoxide dismutase, C-terminal YPC_2017 IPR019831 Manganese/iron superoxide dismutase, N-terminal YPC_2017 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily YPC_2017 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily YPC_2018 IPR036390 Winged helix DNA-binding domain superfamily YPC_2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2018 IPR000847 Transcription regulator HTH, LysR YPC_2018 IPR005119 LysR, substrate-binding YPC_2019 IPR036259 MFS transporter superfamily YPC_2019 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YPC_2019 IPR020846 Major facilitator superfamily domain YPC_2019 IPR011701 Major facilitator superfamily YPC_2020 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_2020 IPR003333 Mycolic acid cyclopropane synthase YPC_2021 IPR026017 Lumazine-binding domain YPC_2021 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily YPC_2021 IPR001783 Lumazine-binding protein YPC_2021 IPR017938 Riboflavin synthase-like beta-barrel YPC_2022 IPR022913 Multidrug resistance protein MdtK YPC_2022 IPR002528 Multi antimicrobial extrusion protein YPC_2025 IPR001697 Pyruvate kinase YPC_2025 IPR011037 Pyruvate kinase-like, insert domain superfamily YPC_2025 IPR015793 Pyruvate kinase, barrel YPC_2025 IPR015795 Pyruvate kinase, C-terminal YPC_2025 IPR015806 Pyruvate kinase, insert domain superfamily YPC_2025 IPR040442 Pyruvate kinase-like domain superfamily YPC_2025 IPR036918 Pyruvate kinase, C-terminal domain superfamily YPC_2025 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPC_2025 IPR018209 Pyruvate kinase, active site YPC_2026 IPR006817 Lipoprotein leucine-zipper YPC_2026 IPR016367 Murein-lipoprotein YPC_2028 IPR038969 Flap endonuclease YPC_2028 IPR029060 PIN-like domain superfamily YPC_2028 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPC_2028 IPR002421 5'-3' exonuclease, N-terminal YPC_2028 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPC_2028 IPR020045 DNA polymerase I-like, H3TH domain YPC_2028 IPR008918 Helix-hairpin-helix motif, class 2 YPC_2029 IPR006120 Resolvase, HTH domain YPC_2029 IPR001584 Integrase, catalytic core YPC_2029 IPR036397 Ribonuclease H superfamily YPC_2029 IPR017894 HTH domain, IS21 transposase-type YPC_2029 IPR012337 Ribonuclease H-like superfamily YPC_2030 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2030 IPR002611 IstB-like ATP-binding protein YPC_2030 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_2030 IPR001270 ClpA/B family YPC_2030 IPR003593 AAA+ ATPase domain YPC_2032 IPR018392 LysM domain YPC_2032 IPR005490 L,D-transpeptidase catalytic domain YPC_2032 IPR041597 L,D-transpeptidase C-terminal domain YPC_2032 IPR038063 L,D-transpeptidase catalytic domain-like YPC_2033 IPR023939 Cysteine desulfuration protein SufE YPC_2033 IPR003808 Fe-S metabolism associated domain, SufE-like YPC_2034 IPR000192 Aminotransferase class V domain YPC_2034 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPC_2034 IPR010970 Cysteine desulfurase, SufS YPC_2034 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_2034 IPR015424 Pyridoxal phosphate-dependent transferase YPC_2034 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_2035 IPR000825 SUF system FeS cluster assembly, SufBD YPC_2035 IPR037284 SUF system FeS cluster assembly, SufBD superfamily YPC_2035 IPR011542 SUF system FeS cluster assembly, SufD YPC_2036 IPR010230 FeS cluster assembly SUF system, ATPase SufC YPC_2036 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2036 IPR017871 ABC transporter, conserved site YPC_2036 IPR003439 ABC transporter-like YPC_2036 IPR003593 AAA+ ATPase domain YPC_2037 IPR010231 SUF system FeS cluster assembly, SufB YPC_2037 IPR000825 SUF system FeS cluster assembly, SufBD YPC_2037 IPR037284 SUF system FeS cluster assembly, SufBD superfamily YPC_2038 IPR035903 HesB-like domain superfamily YPC_2038 IPR011298 FeS assembly scaffold SufA YPC_2038 IPR000361 FeS cluster biogenesis YPC_2038 IPR016092 FeS cluster insertion protein YPC_2038 IPR017870 FeS cluster insertion, C-terminal, conserved site YPC_2039 IPR029069 HotDog domain superfamily YPC_2039 IPR030863 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, MenI YPC_2039 IPR003736 Phenylacetic acid degradation-related domain YPC_2039 IPR006683 Thioesterase domain YPC_2040 IPR009051 Alpha-helical ferredoxin YPC_2040 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_2040 IPR016166 FAD-binding domain, PCMH-type YPC_2040 IPR036318 FAD-binding, type PCMH-like superfamily YPC_2040 IPR006094 FAD linked oxidase, N-terminal YPC_2040 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPC_2040 IPR016164 FAD-linked oxidase-like, C-terminal YPC_2040 IPR004113 FAD-linked oxidase, C-terminal YPC_2041 IPR002549 Transmembrane protein TqsA-like YPC_2043 IPR040442 Pyruvate kinase-like domain superfamily YPC_2043 IPR018274 PEP-utilising enzyme, active site YPC_2043 IPR006319 Phosphoenolpyruvate synthase YPC_2043 IPR008279 PEP-utilising enzyme, mobile domain YPC_2043 IPR013815 ATP-grasp fold, subdomain 1 YPC_2043 IPR036637 Phosphohistidine domain superfamily YPC_2043 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding YPC_2043 IPR000121 PEP-utilising enzyme, C-terminal YPC_2043 IPR023151 PEP-utilising enzyme, conserved site YPC_2043 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPC_2044 IPR005177 Bifunctional kinase-pyrophosphorylase YPC_2044 IPR026530 Phosphoenolpyruvate synthase regulatory protein YPC_2044 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain superfamily YPC_2045 IPR013785 Aldolase-type TIM barrel YPC_2045 IPR006219 DHAP synthase, class 1 YPC_2045 IPR006218 DAHP synthetase I/KDSA YPC_2046 IPR003846 Protein adenylyltransferase SelO YPC_2047 IPR003846 Protein adenylyltransferase SelO YPC_2048 IPR019491 Lipoate protein ligase, C-terminal YPC_2048 IPR004562 Lipoyltransferase/lipoate-protein ligase YPC_2048 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain YPC_2048 IPR023741 Lipoate-protein ligase A YPC_2049 IPR000064 Endopeptidase, NLPC/P60 domain YPC_2049 IPR038765 Papain-like cysteine peptidase superfamily YPC_2051 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF YPC_2051 IPR000390 Small multidrug resistance protein family YPC_2052 IPR000620 EamA domain YPC_2052 IPR000390 Small multidrug resistance protein family YPC_2052 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE YPC_2053 IPR003342 Glycosyl transferase family 39/83 YPC_2053 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase YPC_2054 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPC_2054 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable YPC_2054 IPR002509 NodB homology domain YPC_2055 IPR036477 Formyl transferase, N-terminal domain superfamily YPC_2055 IPR002376 Formyl transferase, N-terminal YPC_2055 IPR021168 Bifunctional polymyxin resistance protein, ArnA YPC_2055 IPR036291 NAD(P)-binding domain superfamily YPC_2055 IPR011034 Formyl transferase-like, C-terminal domain superfamily YPC_2055 IPR005793 Formyl transferase, C-terminal YPC_2055 IPR001509 NAD-dependent epimerase/dehydratase YPC_2056 IPR001173 Glycosyltransferase 2-like YPC_2056 IPR029044 Nucleotide-diphospho-sugar transferases YPC_2056 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase YPC_2057 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPC_2057 IPR015424 Pyridoxal phosphate-dependent transferase YPC_2057 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_2057 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_2057 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB YPC_2058 IPR017871 ABC transporter, conserved site YPC_2058 IPR003593 AAA+ ATPase domain YPC_2058 IPR023693 ABC transporter, vitamin B12, BtuD YPC_2058 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2058 IPR003439 ABC transporter-like YPC_2059 IPR029760 Glutathione peroxidase conserved site YPC_2059 IPR036249 Thioredoxin-like superfamily YPC_2059 IPR000889 Glutathione peroxidase YPC_2059 IPR033674 Thioredoxin/glutathione peroxidase BtuE YPC_2059 IPR029759 Glutathione peroxidase active site YPC_2060 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC YPC_2060 IPR000522 ABC transporter, permease protein, BtuC-like YPC_2060 IPR037294 ABC transporter, BtuC-like YPC_2062 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily YPC_2062 IPR000119 Histone-like DNA-binding protein YPC_2062 IPR020816 Histone-like DNA-binding protein, conserved site YPC_2062 IPR005684 Integration host factor, alpha subunit YPC_2063 IPR005121 Ferrodoxin-fold anticodon-binding domain YPC_2063 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain YPC_2063 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain YPC_2063 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 YPC_2063 IPR005146 B3/B4 tRNA-binding domain YPC_2063 IPR009061 Putative DNA-binding domain superfamily YPC_2063 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit YPC_2063 IPR012340 Nucleic acid-binding, OB-fold YPC_2063 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily YPC_2063 IPR005147 tRNA synthetase, B5-domain YPC_2063 IPR002547 tRNA-binding domain YPC_2064 IPR006195 Aminoacyl-tRNA synthetase, class II YPC_2064 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial YPC_2064 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit YPC_2064 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal YPC_2064 IPR002319 Phenylalanyl-tRNA synthetase YPC_2064 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm YPC_2067 IPR005813 Ribosomal protein L20 YPC_2067 IPR035566 Ribosomal protein L20, C-terminal YPC_2068 IPR021137 Ribosomal protein L35 YPC_2068 IPR018265 Ribosomal protein L35, conserved site YPC_2068 IPR001706 Ribosomal protein L35, non-mitochondrial YPC_2068 IPR037229 Ribosomal protein L35 superfamily YPC_2069 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily YPC_2069 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily YPC_2069 IPR019813 Translation initiation factor 3, conserved site YPC_2069 IPR001288 Translation initiation factor 3 YPC_2069 IPR019814 Translation initiation factor 3, N-terminal YPC_2069 IPR019815 Translation initiation factor 3, C-terminal YPC_2070 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily YPC_2070 IPR012947 Threonyl/alanyl tRNA synthetase, SAD YPC_2070 IPR033728 Threonine-tRNA ligase catalytic core domain YPC_2070 IPR006195 Aminoacyl-tRNA synthetase, class II YPC_2070 IPR004154 Anticodon-binding YPC_2070 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) YPC_2070 IPR012675 Beta-grasp domain superfamily YPC_2070 IPR004095 TGS YPC_2070 IPR012676 TGS-like YPC_2070 IPR002320 Threonine-tRNA ligase, class IIa YPC_2070 IPR036621 Anticodon-binding domain superfamily YPC_2073 IPR025309 KTSC domain YPC_2078 IPR002771 Multiple antibiotic resistance (MarC)-related YPC_2079 IPR008258 Transglycosylase SLT domain 1 YPC_2079 IPR023346 Lysozyme-like domain superfamily YPC_2079 IPR000189 Prokaryotic transglycosylase, active site YPC_2079 IPR023946 Endo-type membrane-bound lytic murein transglycosylase A YPC_2080 IPR006129 Adhesin B YPC_2080 IPR006127 Periplasmic solute binding protein, ZnuA-like YPC_2080 IPR006128 Adhesion lipoprotein YPC_2081 IPR003593 AAA+ ATPase domain YPC_2081 IPR003439 ABC transporter-like YPC_2081 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2081 IPR017871 ABC transporter, conserved site YPC_2086 IPR025229 YniB-like protein YPC_2087 IPR036412 HAD-like superfamily YPC_2087 IPR006439 HAD hydrolase, subfamily IA YPC_2087 IPR041492 Haloacid dehalogenase-like hydrolase YPC_2087 IPR023214 HAD superfamily YPC_2087 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPC_2089 IPR001207 Transposase, mutator type YPC_2090 IPR025499 Pectin degradation protein KdgF YPC_2090 IPR013096 Cupin 2, conserved barrel YPC_2090 IPR014710 RmlC-like jelly roll fold YPC_2090 IPR011051 RmlC-like cupin domain superfamily YPC_2091 IPR021120 KduI/IolB isomerase YPC_2091 IPR011051 RmlC-like cupin domain superfamily YPC_2091 IPR007045 5-keto 4-deoxyuronate isomerase YPC_2091 IPR014710 RmlC-like jelly roll fold YPC_2091 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal YPC_2092 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase YPC_2092 IPR036291 NAD(P)-binding domain superfamily YPC_2092 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPC_2092 IPR002347 Short-chain dehydrogenase/reductase SDR YPC_2093 IPR010702 Periplasmic pectate lyase YPC_2096 IPR003593 AAA+ ATPase domain YPC_2096 IPR003439 ABC transporter-like YPC_2096 IPR017871 ABC transporter, conserved site YPC_2096 IPR040582 MalK, OB fold domain YPC_2096 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2096 IPR005116 Transport-associated OB, type 1 YPC_2096 IPR008995 Molybdate/tungstate binding, C-terminal YPC_2097 IPR006059 Bacterial extracellular solute-binding protein YPC_2098 IPR009331 Oligogalacturonate-specific porin YPC_2099 IPR007404 LexA-binding, inner membrane-associated putative hydrolase YPC_2099 IPR016956 Inner membrane protein YdjM YPC_2102 IPR036365 PGBD-like superfamily YPC_2102 IPR036366 PGBD superfamily YPC_2102 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPC_2102 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily YPC_2103 IPR005471 Transcription regulator IclR, N-terminal YPC_2103 IPR029016 GAF-like domain superfamily YPC_2103 IPR014757 Transcription regulator IclR, C-terminal YPC_2103 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2103 IPR036390 Winged helix DNA-binding domain superfamily YPC_2103 IPR011991 ArsR-like helix-turn-helix domain YPC_2104 IPR027946 Oligogalacturonate lyase domain YPC_2104 IPR015943 WD40/YVTN repeat-like-containing domain superfamily YPC_2105 IPR036259 MFS transporter superfamily YPC_2105 IPR011701 Major facilitator superfamily YPC_2105 IPR020846 Major facilitator superfamily domain YPC_2106 IPR016148 Pili assembly chaperone, C-terminal YPC_2106 IPR018046 Pili assembly chaperone, conserved site YPC_2106 IPR008962 PapD-like superfamily YPC_2106 IPR016147 Pili assembly chaperone, N-terminal YPC_2106 IPR013783 Immunoglobulin-like fold YPC_2106 IPR001829 Pili assembly chaperone, bacterial YPC_2106 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPC_2108 IPR018030 Fimbrial membrane usher, conserved site YPC_2108 IPR000015 Outer membrane usher protein YPC_2108 IPR037224 PapC, N-terminal domain superfamily YPC_2108 IPR042186 Outer membrane usher protein FimD, plug domain YPC_2108 IPR025949 PapC-like, C-terminal domain YPC_2108 IPR025885 PapC, N-terminal domain YPC_2109 IPR018046 Pili assembly chaperone, conserved site YPC_2109 IPR001829 Pili assembly chaperone, bacterial YPC_2109 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPC_2109 IPR008962 PapD-like superfamily YPC_2109 IPR016148 Pili assembly chaperone, C-terminal YPC_2109 IPR013783 Immunoglobulin-like fold YPC_2109 IPR016147 Pili assembly chaperone, N-terminal YPC_2110 IPR008966 Adhesion domain superfamily YPC_2110 IPR036937 Fimbrial-type adhesion domain superfamily YPC_2110 IPR000259 Fimbrial-type adhesion domain YPC_2111 IPR022919 Peptidase M48, protease HtpX, putative YPC_2111 IPR001915 Peptidase M48 YPC_2112 IPR040573 Tail specific protease, N-terminal domain YPC_2112 IPR020992 Tail specific protease, C-terminal YPC_2112 IPR005151 Tail specific protease YPC_2112 IPR029045 ClpP/crotonase-like domain superfamily YPC_2112 IPR036034 PDZ superfamily YPC_2112 IPR001478 PDZ domain YPC_2112 IPR004447 C-terminal-processing peptidase S41A YPC_2113 IPR016103 ProQ/FinO domain YPC_2113 IPR023529 RNA chaperone ProQ YPC_2113 IPR036442 ProQ/FinO domain superfamily YPC_2113 IPR035236 RNA chaperone ProQ, C-terminal YPC_2115 IPR029016 GAF-like domain superfamily YPC_2115 IPR000614 Free Met sulfoxide reductase conserved site YPC_2115 IPR003018 GAF domain YPC_2116 IPR007498 Intermembrane transport protein PqiA-like YPC_2116 IPR011031 Multihaem cytochrome YPC_2116 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type YPC_2122 IPR001829 Pili assembly chaperone, bacterial YPC_2122 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPC_2122 IPR013783 Immunoglobulin-like fold YPC_2122 IPR008962 PapD-like superfamily YPC_2122 IPR016148 Pili assembly chaperone, C-terminal YPC_2122 IPR016147 Pili assembly chaperone, N-terminal YPC_2122 IPR018046 Pili assembly chaperone, conserved site YPC_2126 IPR009950 Protein of unknown function DUF1480 YPC_2129 IPR036397 Ribonuclease H superfamily YPC_2129 IPR012337 Ribonuclease H-like superfamily YPC_2129 IPR006120 Resolvase, HTH domain YPC_2129 IPR001584 Integrase, catalytic core YPC_2129 IPR017894 HTH domain, IS21 transposase-type YPC_2130 IPR003593 AAA+ ATPase domain YPC_2130 IPR001270 ClpA/B family YPC_2130 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2130 IPR002611 IstB-like ATP-binding protein YPC_2130 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_2131 IPR001267 Thymidine kinase YPC_2131 IPR020633 Thymidine kinase, conserved site YPC_2131 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2133 IPR001801 Histone-like protein H-NS YPC_2133 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily YPC_2133 IPR027444 Histone-like protein H-NS, C-terminal domain YPC_2133 IPR027454 Histone-like protein H-NS, N-terminal YPC_2136 IPR028616 Regulator of RpoS YPC_2136 IPR039420 Transcriptional regulatory protein WalR-like YPC_2136 IPR001789 Signal transduction response regulator, receiver domain YPC_2136 IPR011006 CheY-like superfamily YPC_2136 IPR036457 PPM-type phosphatase domain superfamily YPC_2137 IPR032710 NTF2-like domain superfamily YPC_2137 IPR023006 Uncharacterised protein family UPF0225 YPC_2137 IPR004027 SEC-C motif YPC_2138 IPR004810 Formyltetrahydrofolate deformylase YPC_2138 IPR036477 Formyl transferase, N-terminal domain superfamily YPC_2138 IPR002376 Formyl transferase, N-terminal YPC_2138 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain YPC_2138 IPR002912 ACT domain YPC_2139 IPR001207 Transposase, mutator type YPC_2141 IPR036390 Winged helix DNA-binding domain superfamily YPC_2141 IPR005119 LysR, substrate-binding YPC_2141 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2141 IPR000847 Transcription regulator HTH, LysR YPC_2143 IPR005135 Endonuclease/exonuclease/phosphatase YPC_2143 IPR004808 AP endonuclease 1 YPC_2143 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YPC_2143 IPR037493 Exodeoxyribonuclease III-like YPC_2143 IPR020848 AP endonuclease 1, conserved site YPC_2143 IPR020847 AP endonuclease 1, binding site YPC_2144 IPR015797 NUDIX hydrolase-like domain superfamily YPC_2144 IPR020084 NUDIX hydrolase, conserved site YPC_2144 IPR020476 NUDIX hydrolase YPC_2144 IPR000086 NUDIX hydrolase domain YPC_2145 IPR009971 Protein of unknown function DUF1496 YPC_2147 IPR006171 TOPRIM domain YPC_2147 IPR003601 DNA topoisomerase, type IA, domain 2 YPC_2147 IPR023406 DNA topoisomerase, type IA, active site YPC_2147 IPR013497 DNA topoisomerase, type IA, central YPC_2147 IPR034144 DNA topoisomerase 3-like, TOPRIM domain YPC_2147 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YPC_2147 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YPC_2147 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YPC_2147 IPR000380 DNA topoisomerase, type IA YPC_2147 IPR003602 DNA topoisomerase, type IA, DNA-binding domain YPC_2147 IPR005738 DNA topoisomerase III YPC_2147 IPR023405 DNA topoisomerase, type IA, core domain YPC_2148 IPR036676 PurM-like, C-terminal domain superfamily YPC_2148 IPR010918 PurM-like, C-terminal domain YPC_2148 IPR036921 PurM-like, N-terminal domain superfamily YPC_2148 IPR016188 PurM-like, N-terminal domain YPC_2148 IPR023061 Selenophosphate synthetase, class I YPC_2148 IPR004536 Selenophosphate synthetase YPC_2150 IPR026021 Putative NAD(P)H nitroreductase YdjA-like YPC_2150 IPR029479 Nitroreductase YPC_2150 IPR000415 Nitroreductase-like YPC_2153 IPR027473 L-asparaginase, C-terminal YPC_2153 IPR006033 Type I L-asparaginase family YPC_2153 IPR036152 Asparaginase/glutaminase-like superfamily YPC_2153 IPR006034 Asparaginase/glutaminase-like YPC_2153 IPR020827 Asparaginase/glutaminase, active site 1 YPC_2153 IPR041725 Type I (cytosolic) L-asparaginase YPC_2153 IPR037152 L-asparaginase, N-terminal domain superfamily YPC_2153 IPR027474 L-asparaginase, N-terminal YPC_2153 IPR027475 Asparaginase/glutaminase, active site 2 YPC_2153 IPR040919 Asparaginase/glutaminase, C-terminal YPC_2154 IPR036380 Isochorismatase-like superfamily YPC_2154 IPR000868 Isochorismatase-like YPC_2155 IPR009749 Protein of unknown function DUF1315 YPC_2156 IPR028427 Peptide methionine sulfoxide reductase YPC_2156 IPR002579 Peptide methionine sulphoxide reductase MrsB YPC_2156 IPR011057 Mss4-like superfamily YPC_2157 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YPC_2157 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YPC_2157 IPR036291 NAD(P)-binding domain superfamily YPC_2157 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site YPC_2157 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I YPC_2157 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family YPC_2158 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase YPC_2158 IPR025532 Glucose-6-phosphate 1-epimerase YPC_2158 IPR011013 Galactose mutarotase-like domain superfamily YPC_2158 IPR014718 Glycoside hydrolase-type carbohydrate-binding YPC_2159 IPR010583 MltA-interacting MipA YPC_2160 IPR010650 PrkA C-terminal domain YPC_2160 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2160 IPR016230 Serine-protein kinase, PrkA YPC_2160 IPR013153 PrkA AAA domain YPC_2161 IPR006698 Uncharacterised protein family UPF0229 YPC_2163 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2163 IPR000847 Transcription regulator HTH, LysR YPC_2163 IPR005119 LysR, substrate-binding YPC_2163 IPR036390 Winged helix DNA-binding domain superfamily YPC_2164 IPR008778 Pirin, C-terminal domain YPC_2164 IPR003829 Pirin, N-terminal domain YPC_2164 IPR012093 Pirin YPC_2164 IPR011051 RmlC-like cupin domain superfamily YPC_2164 IPR014710 RmlC-like jelly roll fold YPC_2166 IPR011701 Major facilitator superfamily YPC_2166 IPR020846 Major facilitator superfamily domain YPC_2166 IPR036259 MFS transporter superfamily YPC_2166 IPR023697 Multidrug resistance protein MdtL YPC_2167 IPR006076 FAD dependent oxidoreductase YPC_2167 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_2167 IPR023080 D-amino acid dehydrogenase DadA YPC_2168 IPR007390 Sporulation stage V, protein R YPC_2169 IPR014178 Fatty acid response transcription factor FadR YPC_2169 IPR028374 FadR, C-terminal domain YPC_2169 IPR008920 Transcription regulator FadR/GntR, C-terminal YPC_2169 IPR000524 Transcription regulator HTH, GntR YPC_2169 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2169 IPR036390 Winged helix DNA-binding domain superfamily YPC_2170 IPR004671 Na+/H+ antiporter NhaB YPC_2171 IPR023380 DsbB-like superfamily YPC_2171 IPR022920 Disulphide bond formation protein DsbB YPC_2171 IPR003752 Disulphide bond formation protein DsbB/BdbC YPC_2174 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPC_2174 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_2174 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_2174 IPR015424 Pyridoxal phosphate-dependent transferase YPC_2174 IPR016454 Cysteine desulfurase YPC_2174 IPR010240 Cysteine desulfurase IscS YPC_2174 IPR000192 Aminotransferase class V domain YPC_2176 IPR001207 Transposase, mutator type YPC_2178 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPC_2208 IPR001207 Transposase, mutator type YPC_2220 IPR010534 Bacteriophage 933W, GpQ YPC_2222 IPR008711 Recombinase NinB YPC_2222 IPR036619 NinB superfamily YPC_2225 IPR001270 ClpA/B family YPC_2225 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_2225 IPR002611 IstB-like ATP-binding protein YPC_2225 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2225 IPR003593 AAA+ ATPase domain YPC_2226 IPR017894 HTH domain, IS21 transposase-type YPC_2226 IPR006120 Resolvase, HTH domain YPC_2226 IPR012337 Ribonuclease H-like superfamily YPC_2226 IPR036397 Ribonuclease H superfamily YPC_2226 IPR001584 Integrase, catalytic core YPC_2227 IPR002104 Integrase, catalytic domain YPC_2227 IPR013762 Integrase-like, catalytic domain superfamily YPC_2227 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPC_2227 IPR010998 Integrase/recombinase, N-terminal YPC_2227 IPR022000 Min27-like integrase, DNA-binding domain YPC_2228 IPR008228 Uncharacterised conserved protein UCP006173 YPC_2228 IPR005358 Putative zinc- or iron-chelating domain containing protein YPC_2229 IPR011234 Fumarylacetoacetase-like, C-terminal YPC_2229 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPC_2230 IPR023346 Lysozyme-like domain superfamily YPC_2230 IPR011757 Lytic transglycosylase MltB YPC_2230 IPR031304 Transglycosylase SLT domain 2 YPC_2233 IPR027354 YcgL domain YPC_2233 IPR038068 YcgL-like superfamily YPC_2234 IPR005526 Septum formation inhibitor MinC, C-terminal YPC_2234 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal YPC_2234 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily YPC_2234 IPR007874 Septum formation inhibitor MinC, N-terminal YPC_2234 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily YPC_2234 IPR013033 Septum formation inhibitor MinC YPC_2235 IPR025501 ATP binding protein MinD YPC_2235 IPR010223 ATP binding protein MinD, bacterial-type YPC_2235 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain YPC_2235 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2236 IPR005527 Cell division topological specificity factor MinE YPC_2236 IPR036707 Cell division topological specificity factor MinE superfamily YPC_2237 IPR012337 Ribonuclease H-like superfamily YPC_2237 IPR002121 HRDC domain YPC_2237 IPR010997 HRDC-like superfamily YPC_2237 IPR002562 3'-5' exonuclease domain YPC_2237 IPR036397 Ribonuclease H superfamily YPC_2237 IPR006292 Ribonuclease D YPC_2238 IPR000873 AMP-dependent synthetase/ligase YPC_2238 IPR042099 AMP-dependent synthetase-like superfamily YPC_2238 IPR025110 AMP-binding enzyme, C-terminal domain YPC_2238 IPR020845 AMP-binding, conserved site YPC_2240 IPR004658 Outer membrane lipoprotein Slp YPC_2241 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB YPC_2241 IPR000905 Gcp-like domain YPC_2243 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_2243 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2243 IPR006555 ATP-dependent helicase, C-terminal YPC_2243 IPR006935 Helicase/UvrB, N-terminal YPC_2243 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type YPC_2244 IPR019897 RidA, conserved site YPC_2244 IPR035959 RutC-like superfamily YPC_2244 IPR006175 YjgF/YER057c/UK114 family YPC_2244 IPR035709 RutC family, YoaB-like YPC_2247 IPR031338 KDPG/KHG aldolase, active site 2 YPC_2247 IPR000887 KDPG/KHG aldolase YPC_2247 IPR013785 Aldolase-type TIM barrel YPC_2247 IPR031337 KDPG/KHG aldolase, active site 1 YPC_2248 IPR001282 Glucose-6-phosphate dehydrogenase YPC_2248 IPR019796 Glucose-6-phosphate dehydrogenase, active site YPC_2248 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal YPC_2248 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding YPC_2248 IPR036291 NAD(P)-binding domain superfamily YPC_2249 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2249 IPR035472 RpiR-like, SIS domain YPC_2249 IPR000281 Helix-turn-helix protein RpiR YPC_2249 IPR009057 Homeobox-like domain superfamily YPC_2249 IPR001347 Sugar isomerase (SIS) YPC_2250 IPR011037 Pyruvate kinase-like, insert domain superfamily YPC_2250 IPR015793 Pyruvate kinase, barrel YPC_2250 IPR018209 Pyruvate kinase, active site YPC_2250 IPR015795 Pyruvate kinase, C-terminal YPC_2250 IPR036918 Pyruvate kinase, C-terminal domain superfamily YPC_2250 IPR015806 Pyruvate kinase, insert domain superfamily YPC_2250 IPR001697 Pyruvate kinase YPC_2250 IPR040442 Pyruvate kinase-like domain superfamily YPC_2250 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPC_2252 IPR011921 Lipid A biosynthesis myristoyltransferase YPC_2252 IPR004960 Bacterial lipid A biosynthesis acyltransferase YPC_2253 IPR016047 Peptidase M23 YPC_2253 IPR013731 Opacity-associated protein A, N-terminal YPC_2253 IPR018392 LysM domain YPC_2253 IPR011055 Duplicated hybrid motif YPC_2254 IPR006127 Periplasmic solute binding protein, ZnuA-like YPC_2254 IPR035520 High-affinity zinc uptake system protein ZnuA YPC_2255 IPR017882 Zinc import ATP-binding protein ZnuC YPC_2255 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2255 IPR003439 ABC transporter-like YPC_2255 IPR003593 AAA+ ATPase domain YPC_2256 IPR037294 ABC transporter, BtuC-like YPC_2256 IPR001626 ABC transporter, TroCD-like YPC_2257 IPR041445 RuvB, AAA lid domain YPC_2257 IPR008823 RuvB C-terminal winged helix domain YPC_2257 IPR003593 AAA+ ATPase domain YPC_2257 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2257 IPR036390 Winged helix DNA-binding domain superfamily YPC_2257 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2257 IPR008824 RuvB-like P-loop domain YPC_2257 IPR004605 DNA helicase, Holliday junction RuvB-type YPC_2258 IPR010994 RuvA domain 2-like YPC_2258 IPR011114 Holliday junction DNA helicase RuvA, C-terminal YPC_2258 IPR000085 Bacterial DNA recombination protein RuvA YPC_2258 IPR036267 RuvA, C-terminal domain superfamily YPC_2258 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPC_2258 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial YPC_2258 IPR012340 Nucleic acid-binding, OB-fold YPC_2259 IPR012337 Ribonuclease H-like superfamily YPC_2259 IPR036397 Ribonuclease H superfamily YPC_2259 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site YPC_2259 IPR002176 Crossover junction endodeoxyribonuclease RuvC YPC_2260 IPR026564 Transcriptional regulator TACO1-like, domain 3 YPC_2260 IPR002876 Transcriptional regulator TACO1-like YPC_2260 IPR029072 YebC-like YPC_2260 IPR017856 Integrase-like, N-terminal YPC_2261 IPR000086 NUDIX hydrolase domain YPC_2261 IPR020084 NUDIX hydrolase, conserved site YPC_2261 IPR003564 Dihydroneopterin triphosphate diphosphatase YPC_2261 IPR015797 NUDIX hydrolase-like domain superfamily YPC_2262 IPR004524 Aspartate-tRNA ligase, type 1 YPC_2262 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb YPC_2262 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPC_2262 IPR006195 Aminoacyl-tRNA synthetase, class II YPC_2262 IPR004115 GAD-like domain superfamily YPC_2262 IPR029351 GAD domain YPC_2262 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPC_2262 IPR012340 Nucleic acid-binding, OB-fold YPC_2263 IPR036520 UPF0759 superfamily YPC_2263 IPR002763 Protein of unknown function DUF72 YPC_2264 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein YPC_2264 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily YPC_2267 IPR036822 Copper homeostasis (CutC) domain superfamily YPC_2267 IPR023648 Copper homeostasis CutC domain YPC_2267 IPR005627 Copper homeostasis protein CutC YPC_2269 IPR010393 Protein of unknown function DUF991 YPC_2269 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPC_2272 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily YPC_2272 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPC_2272 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPC_2272 IPR005148 Arginyl tRNA synthetase N-terminal domain YPC_2272 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_2272 IPR001278 Arginine-tRNA ligase YPC_2272 IPR035684 Arginyl-tRNA synthetase, catalytic core domain YPC_2272 IPR008909 DALR anticodon binding YPC_2273 IPR008638 Filamentous haemagglutinin, N-terminal YPC_2273 IPR011050 Pectin lyase fold/virulence factor YPC_2273 IPR012334 Pectin lyase fold YPC_2273 IPR025157 Hemagglutinin repeat YPC_2274 IPR027282 Two partner secretion pathway transporter YPC_2274 IPR035251 ShlB, POTRA domain YPC_2274 IPR034746 POTRA domain YPC_2274 IPR013686 Polypeptide-transport-associated, ShlB-type YPC_2274 IPR005565 Haemolysin activator HlyB, C-terminal YPC_2275 IPR004268 Peptidoglycan biosynthesis protein MurJ YPC_2276 IPR036291 NAD(P)-binding domain superfamily YPC_2276 IPR000683 Oxidoreductase, N-terminal YPC_2277 IPR007432 Protein of unknown function DUF480 YPC_2277 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2277 IPR036390 Winged helix DNA-binding domain superfamily YPC_2278 IPR000182 GNAT domain YPC_2278 IPR016181 Acyl-CoA N-acyltransferase YPC_2279 IPR036259 MFS transporter superfamily YPC_2279 IPR011701 Major facilitator superfamily YPC_2279 IPR020846 Major facilitator superfamily domain YPC_2279 IPR022855 Multidrug resistance protein MdtH YPC_2281 IPR010835 Protein of unknown function DUF1439 YPC_2285 IPR026269 Tat proofreading chaperone DmsD-type YPC_2285 IPR036411 TorD-like superfamily YPC_2285 IPR020945 DMSO/Nitrate reductase chaperone YPC_2286 IPR023710 Probable phosphatase YcdX YPC_2286 IPR016195 Polymerase/histidinol phosphatase-like YPC_2286 IPR004013 PHP domain YPC_2286 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPC_2288 IPR022687 DTXR-type HTH domain YPC_2288 IPR000600 ROK family YPC_2288 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2288 IPR036390 Winged helix DNA-binding domain superfamily YPC_2289 IPR030395 Glycerophosphodiester phosphodiesterase domain YPC_2289 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPC_2290 IPR013611 Transport-associated OB, type 2 YPC_2290 IPR008995 Molybdate/tungstate binding, C-terminal YPC_2290 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2290 IPR017871 ABC transporter, conserved site YPC_2290 IPR003439 ABC transporter-like YPC_2290 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YPC_2290 IPR003593 AAA+ ATPase domain YPC_2290 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPC_2291 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_2291 IPR035906 MetI-like superfamily YPC_2292 IPR035906 MetI-like superfamily YPC_2292 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_2294 IPR030395 Glycerophosphodiester phosphodiesterase domain YPC_2294 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPC_2296 IPR036513 STAS domain superfamily YPC_2296 IPR002645 STAS domain YPC_2296 IPR001902 SLC26A/SulP transporter YPC_2296 IPR011547 SLC26A/SulP transporter domain YPC_2296 IPR018045 Sulphate anion transporter, conserved site YPC_2298 IPR006218 DAHP synthetase I/KDSA YPC_2298 IPR013785 Aldolase-type TIM barrel YPC_2298 IPR006269 3-deoxy-8-phosphooctulonate synthase YPC_2299 IPR032698 Protein SirB1, N-terminal YPC_2300 IPR007360 Invasion gene expression up-regulator, SirB YPC_2301 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_2301 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific YPC_2301 IPR040758 Release factor glutamine methyltransferase, N-terminal domain YPC_2301 IPR025714 Methyltransferase domain YPC_2301 IPR004556 Methyltransferase HemK-like YPC_2301 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPC_2302 IPR005139 Peptide chain release factor YPC_2302 IPR000352 Peptide chain release factor class I YPC_2302 IPR004373 Peptide chain release factor 1 YPC_2303 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YPC_2303 IPR036291 NAD(P)-binding domain superfamily YPC_2303 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily YPC_2303 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily YPC_2303 IPR018214 Glutamyl-tRNA reductase, conserved site YPC_2303 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal YPC_2303 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain YPC_2303 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase YPC_2304 IPR004565 Outer membrane lipoprotein LolB YPC_2304 IPR029046 Lipoprotein localisation LolA/LolB/LppX YPC_2305 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YPC_2305 IPR036554 GHMP kinase, C-terminal domain superfamily YPC_2305 IPR006204 GHMP kinase N-terminal domain YPC_2305 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_2305 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPC_2305 IPR013750 GHMP kinase, C-terminal domain YPC_2306 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain YPC_2306 IPR005946 Ribose-phosphate pyrophosphokinase YPC_2306 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type YPC_2306 IPR029057 Phosphoribosyltransferase-like YPC_2306 IPR000836 Phosphoribosyltransferase domain YPC_2306 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site YPC_2308 IPR019698 Protein of unknown function DUF2583 YPC_2310 IPR018171 Peptidyl-tRNA hydrolase, conserved site YPC_2310 IPR036416 Peptidyl-tRNA hydrolase superfamily YPC_2310 IPR001328 Peptidyl-tRNA hydrolase YPC_2311 IPR012675 Beta-grasp domain superfamily YPC_2311 IPR013029 YchF, C-terminal domain YPC_2311 IPR004095 TGS YPC_2311 IPR031167 OBG-type guanine nucleotide-binding (G) domain YPC_2311 IPR006073 GTP binding domain YPC_2311 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 YPC_2311 IPR041706 YchF, N-terminal YPC_2311 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2311 IPR012676 TGS-like YPC_2311 IPR023192 TGS-like domain superfamily YPC_2319 IPR029058 Alpha/Beta hydrolase fold YPC_2319 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain YPC_2320 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2320 IPR039420 Transcriptional regulatory protein WalR-like YPC_2320 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response YPC_2320 IPR001789 Signal transduction response regulator, receiver domain YPC_2320 IPR001867 OmpR/PhoB-type DNA-binding domain YPC_2320 IPR011006 CheY-like superfamily YPC_2321 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_2321 IPR005467 Histidine kinase domain YPC_2321 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_2321 IPR003594 Histidine kinase/HSP90-like ATPase YPC_2321 IPR003660 HAMP domain YPC_2321 IPR006290 Heavy metal sensor kinase YPC_2321 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_2321 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_2329 IPR036291 NAD(P)-binding domain superfamily YPC_2329 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPC_2329 IPR002347 Short-chain dehydrogenase/reductase SDR YPC_2330 IPR013217 Methyltransferase type 12 YPC_2330 IPR016584 Methyltransferase VrtF-like YPC_2330 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_2334 IPR001207 Transposase, mutator type YPC_2344 IPR001509 NAD-dependent epimerase/dehydratase YPC_2344 IPR036291 NAD(P)-binding domain superfamily YPC_2348 IPR014710 RmlC-like jelly roll fold YPC_2348 IPR011051 RmlC-like cupin domain superfamily YPC_2348 IPR010282 Uncharacterised protein family HutD/Ves YPC_2348 IPR023482 Uncharacterised protein family Ves YPC_2349 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPC_2349 IPR032466 Metal-dependent hydrolase YPC_2349 IPR006680 Amidohydrolase-related YPC_2349 IPR023512 Deaminase MtaD/DadD YPC_2350 IPR036390 Winged helix DNA-binding domain superfamily YPC_2350 IPR000524 Transcription regulator HTH, GntR YPC_2350 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2350 IPR010248 Histidine utilization repressor YPC_2350 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPC_2350 IPR011663 UbiC transcription regulator-associated YPC_2351 IPR032466 Metal-dependent hydrolase YPC_2351 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPC_2351 IPR005920 Imidazolonepropionase YPC_2351 IPR006680 Amidohydrolase-related YPC_2353 IPR033900 Porin domain, Gram-negative type YPC_2353 IPR023614 Porin domain superfamily YPC_2353 IPR001897 Porin, gammaproteobacterial YPC_2353 IPR001702 Porin, Gram-negative type YPC_2354 IPR003593 AAA+ ATPase domain YPC_2354 IPR001270 ClpA/B family YPC_2354 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_2354 IPR002611 IstB-like ATP-binding protein YPC_2354 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2355 IPR036397 Ribonuclease H superfamily YPC_2355 IPR006120 Resolvase, HTH domain YPC_2355 IPR012337 Ribonuclease H-like superfamily YPC_2355 IPR017894 HTH domain, IS21 transposase-type YPC_2355 IPR001584 Integrase, catalytic core YPC_2360 IPR015855 ABC transporter, maltose/maltodextrin import, MalK YPC_2360 IPR008995 Molybdate/tungstate binding, C-terminal YPC_2360 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2360 IPR013611 Transport-associated OB, type 2 YPC_2360 IPR003593 AAA+ ATPase domain YPC_2360 IPR003439 ABC transporter-like YPC_2360 IPR017871 ABC transporter, conserved site YPC_2364 IPR000683 Oxidoreductase, N-terminal YPC_2364 IPR036291 NAD(P)-binding domain superfamily YPC_2364 IPR004104 Oxidoreductase, C-terminal YPC_2364 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase YPC_2365 IPR023945 N-acetylmannosamine kinase, bacterial YPC_2365 IPR000600 ROK family YPC_2372 IPR001207 Transposase, mutator type YPC_2373 IPR001207 Transposase, mutator type YPC_2386 IPR036624 Hcp1-like superfamily YPC_2386 IPR008514 Type VI secretion system effector, Hcp YPC_2395 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YPC_2395 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial YPC_2395 IPR000462 CDP-alcohol phosphatidyltransferase YPC_2396 IPR004791 UvrABC system, subunit C YPC_2396 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPC_2396 IPR010994 RuvA domain 2-like YPC_2396 IPR035901 GIY-YIG endonuclease superfamily YPC_2396 IPR000305 GIY-YIG endonuclease YPC_2396 IPR001943 UVR domain YPC_2396 IPR001162 UvrC family homology region YPC_2396 IPR036876 UVR domain superfamily YPC_2396 IPR038476 UvrC homology region 2 superfamily YPC_2397 IPR011006 CheY-like superfamily YPC_2397 IPR001789 Signal transduction response regulator, receiver domain YPC_2397 IPR016032 Signal transduction response regulator, C-terminal effector YPC_2397 IPR000792 Transcription regulator LuxR, C-terminal YPC_2400 IPR009707 Membrane protein GlpM/YdgC YPC_2402 IPR027385 Outer membrane protein beta-barrel domain YPC_2402 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPC_2402 IPR000758 Virulence-related outer membrane protein YPC_2404 IPR004840 Amino acid permease, conserved site YPC_2404 IPR004841 Amino acid permease/ SLC12A domain YPC_2405 IPR006652 Kelch repeat type 1 YPC_2405 IPR015915 Kelch-type beta propeller YPC_2405 IPR019936 Mutatrotase, YjhT-like YPC_2406 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic YPC_2406 IPR010089 Flavoprotein WrbA-like YPC_2406 IPR029039 Flavoprotein-like superfamily YPC_2406 IPR008254 Flavodoxin/nitric oxide synthase YPC_2406 IPR005025 NADPH-dependent FMN reductase-like YPC_2407 IPR006314 Dyp-type peroxidase YPC_2407 IPR006313 Deferrochelatase/peroxidase EfeB YPC_2407 IPR011008 Dimeric alpha-beta barrel YPC_2407 IPR006311 Twin-arginine translocation pathway, signal sequence YPC_2408 IPR034981 EfeO/Algp7, imelysin-like domain YPC_2408 IPR018976 Imelysin-like domain YPC_2408 IPR028096 EfeO-type cupredoxin-like domain YPC_2408 IPR008972 Cupredoxin YPC_2408 IPR038352 Imelysin-like domain superfamily YPC_2409 IPR004923 Iron permease FTR1/Fip1/EfeU YPC_2410 IPR018212 Sodium/solute symporter, conserved site YPC_2410 IPR001734 Sodium/solute symporter YPC_2410 IPR038377 Sodium/glucose symporter superfamily YPC_2410 IPR011851 Sodium/proline symporter YPC_2412 IPR029041 FAD-linked oxidoreductase-like YPC_2412 IPR010985 Ribbon-helix-helix YPC_2412 IPR002872 Proline dehydrogenase domain YPC_2412 IPR024082 Proline dehydrogenase PutA, domain II YPC_2412 IPR024090 Proline dehydrogenase PutA, domain I YPC_2412 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain YPC_2412 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 YPC_2412 IPR024089 Proline dehydrogenase PutA, domain I/II YPC_2412 IPR013321 Arc-type ribbon-helix-helix YPC_2412 IPR016161 Aldehyde/histidinol dehydrogenase YPC_2412 IPR025703 Bifunctional protein PutA YPC_2412 IPR016160 Aldehyde dehydrogenase, cysteine active site YPC_2412 IPR016163 Aldehyde dehydrogenase, C-terminal YPC_2412 IPR016162 Aldehyde dehydrogenase, N-terminal YPC_2412 IPR015590 Aldehyde dehydrogenase domain YPC_2412 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPC_2419 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase YPC_2419 IPR005966 D-cysteine desulfhydrase YPC_2419 IPR023702 D-cysteine desulphhydrase, bacterial YPC_2419 IPR001926 Pyridoxal-phosphate dependent enzyme YPC_2419 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPC_2420 IPR022523 Flagellar regulator, FliZ YPC_2420 IPR004107 Integrase, SAM-like, N-terminal YPC_2422 IPR028617 RNA polymerase sigma factor FliA YPC_2422 IPR013324 RNA polymerase sigma factor, region 3/4-like YPC_2422 IPR000943 RNA polymerase sigma-70 YPC_2422 IPR012845 RNA polymerase sigma factor, FliA/WhiG YPC_2422 IPR007630 RNA polymerase sigma-70 region 4 YPC_2422 IPR007624 RNA polymerase sigma-70 region 3 YPC_2422 IPR007627 RNA polymerase sigma-70 region 2 YPC_2422 IPR014284 RNA polymerase sigma-70 like domain YPC_2422 IPR013325 RNA polymerase sigma factor, region 2 YPC_2424 IPR001492 Flagellin YPC_2424 IPR014981 Flagellin D3 YPC_2424 IPR001029 Flagellin, D0/D1 domain YPC_2425 IPR040026 Flagellar hook-associated protein 2 YPC_2425 IPR003481 Flagellar hook-associated protein 2, N-terminal YPC_2425 IPR010809 Flagellar hook-associated protein 2, C-terminal YPC_2425 IPR010810 Flagellin hook, IN motif YPC_2426 IPR036584 Flagellar protein FliS superfamily YPC_2426 IPR003713 Flagellar protein FliS YPC_2427 IPR008622 Flagellar protein FliT YPC_2428 IPR018060 DNA binding HTH domain, AraC-type YPC_2428 IPR009057 Homeobox-like domain superfamily YPC_2428 IPR018062 HTH domain AraC-type, conserved site YPC_2428 IPR020449 Transcription regulator HTH, AraC- type YPC_2429 IPR003660 HAMP domain YPC_2429 IPR029787 Nucleotide cyclase YPC_2429 IPR033479 Double Cache domain 1 YPC_2429 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase YPC_2429 IPR029151 Periplasmic sensor-like domain superfamily YPC_2431 IPR006675 HDIG domain YPC_2431 IPR003607 HD/PDEase domain YPC_2431 IPR006674 HD domain YPC_2431 IPR037522 HD-GYP domain YPC_2432 IPR003265 HhH-GPD domain YPC_2432 IPR011257 DNA glycosylase YPC_2435 IPR001624 Flagellar hook-basal body complex protein FliE YPC_2436 IPR006182 Secretory protein YscJ/FliF YPC_2436 IPR013556 Flagellar M-ring C-terminal YPC_2436 IPR000067 Flagellar M-ring protein FliF YPC_2437 IPR032779 Flagellar motor switch protein FliG, middle domain YPC_2437 IPR000090 Flagellar motor switch protein FliG YPC_2437 IPR023087 Flagellar motor switch protein FliG, C-terminal YPC_2437 IPR011002 Flagellar motor switch protein FliG, alpha-helical YPC_2437 IPR028263 Flagellar motor switch protein FliG, N-terminal domain YPC_2438 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YPC_2438 IPR000563 Flagellar assembly protein FliH YPC_2439 IPR040627 T3SS EscN ATPase, C-terminal YPC_2439 IPR020005 Flagellar export ATPase FliI, clade 1 YPC_2439 IPR005714 ATPase, type III secretion system, FliI/YscN YPC_2439 IPR032463 ATPase, type III secretion system, FliI YPC_2439 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPC_2439 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPC_2439 IPR003593 AAA+ ATPase domain YPC_2439 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2440 IPR012823 Flagellar export FliJ YPC_2440 IPR018006 Flagellar FliJ, proteobacteria YPC_2441 IPR021136 Flagellar hook-length control protein-like, C-terminal YPC_2441 IPR038610 FliK-like, C-terminal domain superfamily YPC_2441 IPR001635 Flagellar hook-length control protein FliK YPC_2443 IPR005503 Flagellar basal body-associated protein FliL YPC_2444 IPR028976 CheC-like superfamily YPC_2444 IPR001689 Flagellar motor switch protein FliM YPC_2444 IPR001543 Surface presentation of antigen (SpoA) YPC_2444 IPR036429 SpoA-like superfamily YPC_2445 IPR031576 Flagellar motor switch protein FliN, N-terminal YPC_2445 IPR036429 SpoA-like superfamily YPC_2445 IPR012826 Flagellar motor switch FliN YPC_2445 IPR001543 Surface presentation of antigen (SpoA) YPC_2445 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPC_2446 IPR022781 Flagellar biosynthesis protein, FliO YPC_2447 IPR005838 Type III secretion system inner membrane P protein YPC_2447 IPR005837 Flagellar transport protein FliP YPC_2448 IPR002191 Bacterial export protein family 3 YPC_2448 IPR006305 Flagellar biosynthesis protein FliQ YPC_2449 IPR002010 Type III secretion system inner membrane R protein YPC_2449 IPR006303 Flagellar biosynthesis protein FliR YPC_2452 IPR030877 Sulfofructose kinase YPC_2452 IPR029056 Ribokinase-like YPC_2452 IPR002139 Ribokinase/fructokinase YPC_2452 IPR011611 Carbohydrate kinase PfkB YPC_2452 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPC_2453 IPR001851 ABC transporter, permease YPC_2454 IPR001851 ABC transporter, permease YPC_2455 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2455 IPR015861 ABC transporter, ribose import, RbsA YPC_2455 IPR003593 AAA+ ATPase domain YPC_2455 IPR003439 ABC transporter-like YPC_2455 IPR017871 ABC transporter, conserved site YPC_2456 IPR025997 Periplasmic binding protein YPC_2456 IPR028082 Periplasmic binding protein-like I YPC_2456 IPR030159 Autoinducer 2 ABC transporter, substrate-binding protein LsrB YPC_2458 IPR001851 ABC transporter, permease YPC_2459 IPR002347 Short-chain dehydrogenase/reductase SDR YPC_2459 IPR036291 NAD(P)-binding domain superfamily YPC_2459 IPR013454 Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase YPC_2459 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPC_2459 IPR001303 Class II aldolase/adducin N-terminal YPC_2460 IPR037171 NagB/RpiA transferase-like YPC_2460 IPR007324 Sugar-binding domain, putative YPC_2460 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2460 IPR013324 RNA polymerase sigma factor, region 3/4-like YPC_2461 IPR001029 Flagellin, D0/D1 domain YPC_2461 IPR013384 Flagellar hook-associated protein 3 YPC_2462 IPR002371 Flagellar hook-associated protein 1 YPC_2462 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPC_2462 IPR001444 Flagellar basal body rod protein, N-terminal YPC_2467 IPR019301 Flagellar protein FlgJ, N-terminal YPC_2467 IPR013377 Peptidoglycan hydrolase FlgJ YPC_2467 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain YPC_2468 IPR001782 Flagellar P-ring protein YPC_2469 IPR000527 Flagellar L-ring protein YPC_2470 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPC_2470 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPC_2470 IPR001444 Flagellar basal body rod protein, N-terminal YPC_2470 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPC_2470 IPR012834 Flagellar basal-body rod FlgG YPC_2470 IPR019776 Flagellar basal body rod protein, conserved site YPC_2471 IPR019776 Flagellar basal body rod protein, conserved site YPC_2471 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPC_2471 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPC_2471 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPC_2471 IPR001444 Flagellar basal body rod protein, N-terminal YPC_2472 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPC_2472 IPR001444 Flagellar basal body rod protein, N-terminal YPC_2472 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPC_2472 IPR037058 Flagellar hook protein FlgE superfamily YPC_2472 IPR011491 Flagellar hook protein FlgE YPC_2472 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPC_2472 IPR019776 Flagellar basal body rod protein, conserved site YPC_2473 IPR005648 Flagellar hook capping protein YPC_2473 IPR025965 FlgD Ig-like domain YPC_2473 IPR025963 FlgD Tudor-like domain YPC_2474 IPR019776 Flagellar basal body rod protein, conserved site YPC_2474 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPC_2474 IPR006299 Flagellar basal-body rod protein FlgC YPC_2474 IPR001444 Flagellar basal body rod protein, N-terminal YPC_2475 IPR006300 Flagellar basal-body rod protein FlgB YPC_2475 IPR001444 Flagellar basal body rod protein, N-terminal YPC_2475 IPR019776 Flagellar basal body rod protein, conserved site YPC_2476 IPR039246 Flagellar protein FlgA YPC_2476 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YPC_2476 IPR013974 SAF domain YPC_2476 IPR041231 FlgA, N-terminal YPC_2477 IPR007412 Anti-sigma-28 factor, FlgM YPC_2477 IPR035890 Anti-sigma-28 factor FlgM superfamily YPC_2477 IPR031316 Anti-sigma-28 factor FlgM, C-terminal YPC_2478 IPR007809 FlgN-like protein YPC_2478 IPR036679 FlgN-like superfamily YPC_2483 IPR009420 Flagellar protein FlhE YPC_2486 IPR029025 Type III secretion system substrate exporter, C-terminal YPC_2486 IPR006135 Type III secretion system substrate exporter YPC_2486 IPR006136 Flagellar biosynthetic protein FlhB YPC_2487 IPR006136 Flagellar biosynthetic protein FlhB YPC_2487 IPR029025 Type III secretion system substrate exporter, C-terminal YPC_2487 IPR006135 Type III secretion system substrate exporter YPC_2492 IPR019648 Protein of unknown function DUF2511 YPC_2494 IPR007348 CopC domain YPC_2494 IPR014756 Immunoglobulin E-set YPC_2494 IPR032694 Copper transport protein C/D YPC_2495 IPR008331 Ferritin/DPS protein domain YPC_2495 IPR001519 Ferritin YPC_2495 IPR041719 Ferritin, prokaryotic-type YPC_2495 IPR009078 Ferritin-like superfamily YPC_2495 IPR009040 Ferritin-like diiron domain YPC_2495 IPR012347 Ferritin-like YPC_2497 IPR009052 DNA polymerase III-theta, bacterial YPC_2497 IPR036745 DNA polymerase III-theta superfamily YPC_2498 IPR029058 Alpha/Beta hydrolase fold YPC_2498 IPR002410 Peptidase S33 YPC_2498 IPR000073 Alpha/beta hydrolase fold-1 YPC_2498 IPR005944 Proline iminopeptidase YPC_2499 IPR005944 Proline iminopeptidase YPC_2499 IPR029058 Alpha/Beta hydrolase fold YPC_2499 IPR000073 Alpha/beta hydrolase fold-1 YPC_2499 IPR002410 Peptidase S33 YPC_2501 IPR029058 Alpha/Beta hydrolase fold YPC_2501 IPR002471 Peptidase S9, serine active site YPC_2501 IPR023302 Peptidase S9A, N-terminal domain YPC_2501 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain YPC_2501 IPR002470 Peptidase S9A, prolyl oligopeptidase YPC_2502 IPR020236 Uncharacterised protein family YebF YPC_2502 IPR038703 YebF/Cmi superfamily YPC_2502 IPR025603 YebF/Colicin-M immunity protein YPC_2504 IPR038627 YebG-like superfamily YPC_2504 IPR009813 Uncharacterised protein family YebG YPC_2505 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPC_2505 IPR011545 DEAD/DEAH box helicase domain YPC_2505 IPR028619 ATP-dependent RNA helicase DbpA YPC_2505 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain YPC_2505 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_2505 IPR001650 Helicase, C-terminal YPC_2505 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YPC_2505 IPR014014 RNA helicase, DEAD-box type, Q motif YPC_2505 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2506 IPR013815 ATP-grasp fold, subdomain 1 YPC_2506 IPR011761 ATP-grasp fold YPC_2506 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YPC_2506 IPR011054 Rudiment single hybrid motif YPC_2506 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase YPC_2506 IPR016185 Pre-ATP-grasp domain superfamily YPC_2507 IPR005371 Uncharacterised protein family UPF0181 YPC_2508 IPR006805 Anthranilate synthase component I, N-terminal YPC_2508 IPR015890 Chorismate-utilising enzyme, C-terminal YPC_2508 IPR005802 Aminodeoxychorismate synthase, component I YPC_2508 IPR005801 ADC synthase YPC_2508 IPR019999 Anthranilate synthase component I-like YPC_2509 IPR015797 NUDIX hydrolase-like domain superfamily YPC_2509 IPR000086 NUDIX hydrolase domain YPC_2509 IPR000059 NUDIX hydrolase, NudL, conserved site YPC_2509 IPR023735 Uncharacterised nudix hydrolase NudL YPC_2510 IPR029009 Allosteric substrate binding domain superfamily YPC_2510 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form YPC_2510 IPR005130 Serine dehydratase-like, alpha subunit YPC_2510 IPR005131 Serine dehydratase beta chain YPC_2511 IPR002563 Flavin reductase like domain YPC_2511 IPR011982 4-hydroxyphenylacetate 3-monooxygenase, reductase component YPC_2511 IPR012349 FMN-binding split barrel YPC_2512 IPR024719 HpaB/PvcC/4-BUDH C-terminal YPC_2512 IPR012688 4-HPA 3-monooxygenase large component, gammaproteobacteria YPC_2512 IPR024674 HpaB/PvcC/4-BUDH N-terminal YPC_2512 IPR004925 HpaB/PvcC/4-BUDH YPC_2512 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein YPC_2512 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily YPC_2512 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal YPC_2515 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPC_2515 IPR023701 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, Enterobacteriales YPC_2515 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YPC_2515 IPR040442 Pyruvate kinase-like domain superfamily YPC_2515 IPR005000 HpcH/HpaI aldolase/citrate lyase domain YPC_2516 IPR011234 Fumarylacetoacetase-like, C-terminal YPC_2516 IPR012690 2-oxo-hepta-4-ene-1,7-dioic acid hydratase YPC_2516 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPC_2517 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase YPC_2517 IPR014347 Tautomerase/MIF superfamily YPC_2518 IPR011984 3,4-dihydroxyphenylacetate 2,3-dioxygenase YPC_2518 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YPC_2519 IPR016163 Aldehyde dehydrogenase, C-terminal YPC_2519 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPC_2519 IPR016160 Aldehyde dehydrogenase, cysteine active site YPC_2519 IPR016162 Aldehyde dehydrogenase, N-terminal YPC_2519 IPR016161 Aldehyde/histidinol dehydrogenase YPC_2519 IPR015590 Aldehyde dehydrogenase domain YPC_2519 IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YPC_2520 IPR011234 Fumarylacetoacetase-like, C-terminal YPC_2520 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit YPC_2520 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit YPC_2520 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPC_2521 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit YPC_2521 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit YPC_2521 IPR011234 Fumarylacetoacetase-like, C-terminal YPC_2521 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPC_2522 IPR000835 MarR-type HTH domain YPC_2522 IPR023187 Transcriptional regulator MarR-type, conserved site YPC_2522 IPR012712 HTH-type transcriptional regulator HpaR/FarR YPC_2522 IPR036390 Winged helix DNA-binding domain superfamily YPC_2522 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2523 IPR000644 CBS domain YPC_2523 IPR036318 FAD-binding, type PCMH-like superfamily YPC_2523 IPR005496 Integral membrane protein TerC YPC_2523 IPR005170 Transporter-associated domain YPC_2523 IPR016169 FAD-binding, type PCMH, subdomain 2 YPC_2524 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily YPC_2524 IPR004720 Phosphotransferase system, sorbose subfamily IIB component YPC_2524 IPR013789 Phosphotransferase system, mannose family IIA component YPC_2524 IPR004701 Phosphotransferase system, mannose-type IIA component YPC_2524 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily YPC_2524 IPR033887 PTS system mannose/sorbose specific IIA subunit YPC_2524 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup YPC_2525 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit YPC_2526 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component YPC_2527 IPR009328 Protein of unknown function DUF986 YPC_2528 IPR022929 Putative manganese efflux pump MntP YPC_2528 IPR003810 Putative manganese efflux pump YPC_2529 IPR010916 TonB box, conserved site YPC_2529 IPR012910 TonB-dependent receptor, plug domain YPC_2529 IPR000531 TonB-dependent receptor-like, beta-barrel YPC_2529 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPC_2529 IPR010917 TonB-dependent receptor, conserved site YPC_2529 IPR039423 TonB-dependent receptor-like YPC_2529 IPR010105 TonB-dependent siderophore receptor YPC_2529 IPR030149 TonB-dependent siderophore receptor FcuA/FatA YPC_2529 IPR037066 TonB-dependent receptor, plug domain superfamily YPC_2531 IPR000160 GGDEF domain YPC_2531 IPR035965 PAS domain superfamily YPC_2531 IPR013656 PAS fold-4 YPC_2531 IPR007895 MASE1 YPC_2531 IPR013655 PAS fold-3 YPC_2531 IPR029787 Nucleotide cyclase YPC_2531 IPR001610 PAC motif YPC_2531 IPR001633 EAL domain YPC_2531 IPR000014 PAS domain YPC_2531 IPR000700 PAS-associated, C-terminal YPC_2531 IPR035919 EAL domain superfamily YPC_2533 IPR025714 Methyltransferase domain YPC_2533 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted YPC_2533 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_2535 IPR012340 Nucleic acid-binding, OB-fold YPC_2535 IPR002059 Cold-shock protein, DNA-binding YPC_2535 IPR019844 Cold-shock (CSD) domain YPC_2535 IPR012156 Cold shock, CspA YPC_2535 IPR011129 Cold shock domain YPC_2536 IPR019672 Protein of unknown function DUF2627 YPC_2537 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPC_2537 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP YPC_2538 IPR004841 Amino acid permease/ SLC12A domain YPC_2538 IPR004840 Amino acid permease, conserved site YPC_2541 IPR025594 YebO-like protein YPC_2542 IPR025611 YobH-like protein YPC_2543 IPR020262 Uncharacterised protein family YecJ YPC_2544 IPR009057 Homeobox-like domain superfamily YPC_2544 IPR018060 DNA binding HTH domain, AraC-type YPC_2544 IPR018062 HTH domain AraC-type, conserved site YPC_2544 IPR020449 Transcription regulator HTH, AraC- type YPC_2546 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPC_2546 IPR011527 ABC transporter type 1, transmembrane domain YPC_2546 IPR003439 ABC transporter-like YPC_2546 IPR039421 Type I protein exporter YPC_2546 IPR017871 ABC transporter, conserved site YPC_2546 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2546 IPR003593 AAA+ ATPase domain YPC_2549 IPR024079 Metallopeptidase, catalytic domain superfamily YPC_2549 IPR010384 MtfA family YPC_2549 IPR042252 MtfA, N-terminal YPC_2551 IPR028082 Periplasmic binding protein-like I YPC_2551 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_2551 IPR000843 LacI-type HTH domain YPC_2551 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPC_2552 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2552 IPR002611 IstB-like ATP-binding protein YPC_2552 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_2552 IPR001270 ClpA/B family YPC_2552 IPR003593 AAA+ ATPase domain YPC_2553 IPR017894 HTH domain, IS21 transposase-type YPC_2553 IPR036397 Ribonuclease H superfamily YPC_2553 IPR006120 Resolvase, HTH domain YPC_2553 IPR001584 Integrase, catalytic core YPC_2553 IPR012337 Ribonuclease H-like superfamily YPC_2554 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPC_2554 IPR028082 Periplasmic binding protein-like I YPC_2554 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_2554 IPR000843 LacI-type HTH domain YPC_2556 IPR001207 Transposase, mutator type YPC_2557 IPR036259 MFS transporter superfamily YPC_2557 IPR000576 LacY/RafB permease family YPC_2557 IPR018457 LacY/RafB permease family, conserved site YPC_2557 IPR020846 Major facilitator superfamily domain YPC_2558 IPR031705 Glycosyl hydrolase family 36, C-terminal YPC_2558 IPR017853 Glycoside hydrolase superfamily YPC_2558 IPR013785 Aldolase-type TIM barrel YPC_2558 IPR002252 Glycoside hydrolase family 36 YPC_2558 IPR000111 Glycoside hydrolase family 27/36, conserved site YPC_2558 IPR031704 Glycosyl hydrolase family 36, N-terminal YPC_2558 IPR038417 Alpha-galactosidase, N-terminal domain superfamily YPC_2561 IPR041354 4'-phosphopantetheinyl transferase, N-terminal domain YPC_2561 IPR003542 Enterobactin synthetase-like, component D YPC_2561 IPR037143 4'-phosphopantetheinyl transferase domain superfamily YPC_2561 IPR008278 4'-phosphopantetheinyl transferase domain YPC_2562 IPR004682 TRAP transporter solute receptor, DctP family YPC_2562 IPR018389 TRAP transporter solute receptor DctP/TeaA YPC_2562 IPR038404 TRAP transporter solute receptor DctP superfamily YPC_2565 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit YPC_2565 IPR004681 TRAP transporter large membrane protein DctM YPC_2566 IPR011006 CheY-like superfamily YPC_2566 IPR016032 Signal transduction response regulator, C-terminal effector YPC_2566 IPR001789 Signal transduction response regulator, receiver domain YPC_2566 IPR000792 Transcription regulator LuxR, C-terminal YPC_2570 IPR018636 Protein of unknown function DUF2058 YPC_2576 IPR002528 Multi antimicrobial extrusion protein YPC_2577 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body YPC_2577 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_2577 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail YPC_2577 IPR018223 Argininosuccinate synthase, conserved site YPC_2577 IPR023437 Argininosuccinate synthase, type 2 subfamily YPC_2577 IPR001518 Argininosuccinate synthase YPC_2578 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent YPC_2578 IPR013785 Aldolase-type TIM barrel YPC_2578 IPR020920 L-lactate dehydrogenase, bacterial YPC_2578 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site YPC_2578 IPR037396 FMN hydroxy acid dehydrogenase domain YPC_2578 IPR000262 FMN-dependent dehydrogenase YPC_2580 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YPC_2580 IPR036849 Enolase-like, C-terminal domain superfamily YPC_2580 IPR029017 Enolase-like, N-terminal YPC_2580 IPR029065 Enolase C-terminal domain-like YPC_2580 IPR034610 L-fuconate dehydratase YPC_2580 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPC_2581 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPC_2581 IPR011234 Fumarylacetoacetase-like, C-terminal YPC_2582 IPR036291 NAD(P)-binding domain superfamily YPC_2582 IPR002347 Short-chain dehydrogenase/reductase SDR YPC_2582 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPC_2583 IPR007263 Protein of unknown function DUF393 YPC_2584 IPR036259 MFS transporter superfamily YPC_2584 IPR020846 Major facilitator superfamily domain YPC_2584 IPR011701 Major facilitator superfamily YPC_2586 IPR008964 Invasin/intimin cell-adhesion fragments YPC_2586 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPC_2586 IPR013783 Immunoglobulin-like fold YPC_2586 IPR038177 Inverse autotransporter, beta-domain superfamily YPC_2586 IPR015217 Invasin, domain 3 YPC_2586 IPR024519 Inverse autotransporter, beta-domain YPC_2586 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPC_2586 IPR022409 PKD/Chitinase domain YPC_2586 IPR018392 LysM domain YPC_2587 IPR001207 Transposase, mutator type YPC_2588 IPR007458 Protein of unknown function DUF496 YPC_2591 IPR036397 Ribonuclease H superfamily YPC_2591 IPR012337 Ribonuclease H-like superfamily YPC_2591 IPR013520 Exonuclease, RNase T/DNA polymerase III YPC_2591 IPR013620 Exodeoxyribonuclease I, C-terminal YPC_2591 IPR038649 Exonuclease I, SH3-like domain superfamily YPC_2591 IPR034747 Exonuclease I, SH3-like domain YPC_2591 IPR034748 Exonuclease I, C-terminal alpha-helical domain YPC_2591 IPR023607 Exodeoxyribonuclease I YPC_2592 IPR002293 Amino acid/polyamine transporter I YPC_2594 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YPC_2594 IPR016205 Glycerol dehydrogenase YPC_2594 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPC_2595 IPR003439 ABC transporter-like YPC_2595 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2595 IPR003593 AAA+ ATPase domain YPC_2595 IPR015861 ABC transporter, ribose import, RbsA YPC_2595 IPR017871 ABC transporter, conserved site YPC_2596 IPR003439 ABC transporter-like YPC_2596 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2596 IPR015861 ABC transporter, ribose import, RbsA YPC_2596 IPR003593 AAA+ ATPase domain YPC_2596 IPR017871 ABC transporter, conserved site YPC_2597 IPR001851 ABC transporter, permease YPC_2599 IPR036291 NAD(P)-binding domain superfamily YPC_2599 IPR001509 NAD-dependent epimerase/dehydratase YPC_2601 IPR020621 ATP phosphoribosyltransferase HisG, long form YPC_2601 IPR013115 Histidine biosynthesis HisG, C-terminal YPC_2601 IPR001348 ATP phosphoribosyltransferase HisG YPC_2601 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPC_2601 IPR018198 ATP phosphoribosyltransferase, conserved site YPC_2601 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPC_2601 IPR013820 ATP phosphoribosyltransferase, catalytic domain YPC_2602 IPR022695 Histidinol dehydrogenase, monofunctional YPC_2602 IPR016161 Aldehyde/histidinol dehydrogenase YPC_2602 IPR001692 Histidinol dehydrogenase, conserved site YPC_2602 IPR012131 Histidinol dehydrogenase YPC_2603 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPC_2603 IPR004839 Aminotransferase, class I/classII YPC_2603 IPR005861 Histidinol-phosphate aminotransferase family YPC_2603 IPR015424 Pyridoxal phosphate-dependent transferase YPC_2603 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_2603 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_2604 IPR023214 HAD superfamily YPC_2604 IPR036412 HAD-like superfamily YPC_2604 IPR020566 Histidine biosynthesis bifunctional protein HisB YPC_2604 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily YPC_2604 IPR006543 Histidinol-phosphate phosphatase YPC_2604 IPR000807 Imidazoleglycerol-phosphate dehydratase YPC_2604 IPR005954 Histidinol-phosphatase YPC_2604 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site YPC_2604 IPR006549 HAD-superfamily hydrolase,subfamily IIIA YPC_2604 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_2605 IPR017926 Glutamine amidotransferase YPC_2605 IPR029062 Class I glutamine amidotransferase-like YPC_2605 IPR010139 Imidazole glycerol phosphate synthase, subunit H YPC_2606 IPR013785 Aldolase-type TIM barrel YPC_2606 IPR006062 Histidine biosynthesis YPC_2606 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA YPC_2606 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YPC_2606 IPR011060 Ribulose-phosphate binding barrel YPC_2607 IPR004651 Histidine biosynthesis, HisF YPC_2607 IPR006062 Histidine biosynthesis YPC_2607 IPR013785 Aldolase-type TIM barrel YPC_2607 IPR011060 Ribulose-phosphate binding barrel YPC_2608 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily YPC_2608 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain YPC_2608 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like YPC_2608 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase YPC_2608 IPR023019 Histidine biosynthesis bifunctional protein HisIE YPC_2609 IPR036291 NAD(P)-binding domain superfamily YPC_2609 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating YPC_2609 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding YPC_2609 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPC_2609 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPC_2609 IPR006184 6-phosphogluconate-binding site YPC_2609 IPR006114 6-phosphogluconate dehydrogenase, C-terminal YPC_2609 IPR006183 6-phosphogluconate dehydrogenase YPC_2610 IPR029044 Nucleotide-diphospho-sugar transferases YPC_2610 IPR005835 Nucleotidyl transferase domain YPC_2610 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type YPC_2611 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type YPC_2611 IPR005835 Nucleotidyl transferase domain YPC_2611 IPR029044 Nucleotide-diphospho-sugar transferases YPC_2613 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPC_2613 IPR022770 Ferric iron reductase FhuF domain YPC_2613 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPC_2614 IPR037066 TonB-dependent receptor, plug domain superfamily YPC_2614 IPR010917 TonB-dependent receptor, conserved site YPC_2614 IPR000531 TonB-dependent receptor-like, beta-barrel YPC_2614 IPR039423 TonB-dependent receptor-like YPC_2614 IPR011662 Secretin/TonB, short N-terminal domain YPC_2614 IPR012910 TonB-dependent receptor, plug domain YPC_2614 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPC_2614 IPR010105 TonB-dependent siderophore receptor YPC_2615 IPR002491 ABC transporter periplasmic binding domain YPC_2618 IPR037294 ABC transporter, BtuC-like YPC_2618 IPR000522 ABC transporter, permease protein, BtuC-like YPC_2619 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2619 IPR017871 ABC transporter, conserved site YPC_2619 IPR003439 ABC transporter-like YPC_2619 IPR003593 AAA+ ATPase domain YPC_2623 IPR002129 Pyridoxal phosphate-dependent decarboxylase YPC_2623 IPR015424 Pyridoxal phosphate-dependent transferase YPC_2623 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_2623 IPR021115 Pyridoxal-phosphate binding site YPC_2624 IPR008090 Ferric iron reductase YPC_2624 IPR024726 Ferric iron reductase, C-terminal YPC_2624 IPR022770 Ferric iron reductase FhuF domain YPC_2625 IPR005496 Integral membrane protein TerC YPC_2625 IPR036318 FAD-binding, type PCMH-like superfamily YPC_2625 IPR000644 CBS domain YPC_2625 IPR005170 Transporter-associated domain YPC_2625 IPR016169 FAD-binding, type PCMH, subdomain 2 YPC_2626 IPR007844 AsmA YPC_2627 IPR011962 dCTP deaminase YPC_2627 IPR029054 dUTPase-like YPC_2627 IPR036157 dUTPase-like superfamily YPC_2627 IPR033704 dUTPase, trimeric YPC_2628 IPR000764 Uridine kinase-like YPC_2628 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2628 IPR006083 Phosphoribulokinase/uridine kinase YPC_2628 IPR026008 Uridine kinase YPC_2629 IPR034904 Fe-S cluster assembly domain superfamily YPC_2629 IPR019591 Mrp/NBP35 ATP-binding protein YPC_2629 IPR000808 Mrp, conserved site YPC_2629 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 YPC_2629 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2630 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPC_2630 IPR023458 Methionine-tRNA ligase, type 1 YPC_2630 IPR014758 Methionyl-tRNA synthetase YPC_2630 IPR015413 Methionyl/Leucyl tRNA synthetase YPC_2630 IPR012340 Nucleic acid-binding, OB-fold YPC_2630 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_2630 IPR002547 tRNA-binding domain YPC_2630 IPR033911 Methioninyl-tRNA synthetase core domain YPC_2630 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPC_2630 IPR029038 Methionyl-tRNA synthetase, Zn-domain YPC_2630 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain YPC_2630 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal YPC_2631 IPR036515 Transposase IS200-like superfamily YPC_2631 IPR002686 Transposase IS200-like YPC_2637 IPR011701 Major facilitator superfamily YPC_2637 IPR036259 MFS transporter superfamily YPC_2637 IPR020846 Major facilitator superfamily domain YPC_2638 IPR022957 Uncharacterised protein family UPF0299 YPC_2638 IPR005538 LrgA/CidA family YPC_2639 IPR007300 CidB/LrgB family YPC_2639 IPR005261 Conserved hypothetical protein CHP00659 YPC_2641 IPR020797 Cytidine deaminase, bacteria YPC_2641 IPR016193 Cytidine deaminase-like YPC_2641 IPR016192 APOBEC/CMP deaminase, zinc-binding YPC_2641 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain YPC_2641 IPR002125 Cytidine and deoxycytidylate deaminase domain YPC_2641 IPR006263 Cytidine deaminase, homodimeric YPC_2642 IPR012301 Malic enzyme, N-terminal domain YPC_2642 IPR015884 Malic enzyme, conserved site YPC_2642 IPR037062 Malic enzyme, N-terminal domain superfamily YPC_2642 IPR012302 Malic enzyme, NAD-binding YPC_2642 IPR036291 NAD(P)-binding domain superfamily YPC_2642 IPR023667 NAD-dependent malic enzyme, proteobacteria YPC_2642 IPR001891 Malic oxidoreductase YPC_2643 IPR023604 Uncharacterised protein family SanA YPC_2643 IPR003848 Domain of unknown function DUF218 YPC_2644 IPR030158 Galactoside transport system permease protein MglC YPC_2644 IPR001851 ABC transporter, permease YPC_2645 IPR003593 AAA+ ATPase domain YPC_2645 IPR017871 ABC transporter, conserved site YPC_2645 IPR003439 ABC transporter-like YPC_2645 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2645 IPR015862 ABC transporter, galactose import, MglA YPC_2646 IPR025997 Periplasmic binding protein YPC_2646 IPR028082 Periplasmic binding protein-like I YPC_2648 IPR007349 Domain of unknown function DUF418 YPC_2649 IPR020602 GTP cyclohydrolase I domain YPC_2649 IPR018234 GTP cyclohydrolase I, conserved site YPC_2649 IPR001474 GTP cyclohydrolase I YPC_2650 IPR036259 MFS transporter superfamily YPC_2650 IPR010645 Uncharacterised MFS-type transporter YbfB YPC_2651 IPR005119 LysR, substrate-binding YPC_2651 IPR000847 Transcription regulator HTH, LysR YPC_2651 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2651 IPR036390 Winged helix DNA-binding domain superfamily YPC_2652 IPR013154 Alcohol dehydrogenase, N-terminal YPC_2652 IPR020843 Polyketide synthase, enoylreductase domain YPC_2652 IPR036291 NAD(P)-binding domain superfamily YPC_2652 IPR014183 Alcohol dehydrogenase class III YPC_2652 IPR011032 GroES-like superfamily YPC_2652 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site YPC_2652 IPR013149 Alcohol dehydrogenase, C-terminal YPC_2653 IPR014186 S-formylglutathione hydrolase YPC_2653 IPR000801 Putative esterase YPC_2653 IPR029058 Alpha/Beta hydrolase fold YPC_2656 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPC_2656 IPR022824 Multidrug resistance protein MdtA YPC_2656 IPR006143 RND efflux pump, membrane fusion protein YPC_2657 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2657 IPR017871 ABC transporter, conserved site YPC_2657 IPR003439 ABC transporter-like YPC_2657 IPR003593 AAA+ ATPase domain YPC_2659 IPR036425 MoaB/Mog-like domain superfamily YPC_2659 IPR036688 MoeA, C-terminal, domain IV superfamily YPC_2659 IPR005110 MoeA, N-terminal and linker domain YPC_2659 IPR038987 Molybdopterin biosynthesis protein MoeA-like YPC_2659 IPR008284 Molybdenum cofactor biosynthesis, conserved site YPC_2659 IPR036135 MoeA, N-terminal and linker domain superfamily YPC_2659 IPR001453 MoaB/Mog domain YPC_2659 IPR005111 MoeA, C-terminal, domain IV YPC_2660 IPR000594 THIF-type NAD/FAD binding fold YPC_2660 IPR012730 Molybdopterin synthase sulfurylase MoeB YPC_2660 IPR035985 Ubiquitin-activating enzyme YPC_2661 IPR001207 Transposase, mutator type YPC_2663 IPR003439 ABC transporter-like YPC_2663 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2663 IPR003593 AAA+ ATPase domain YPC_2663 IPR032781 ABC-transporter extension domain YPC_2675 IPR025959 Winged helix-turn helix domain YPC_2675 IPR038717 Tc1-like transposase, DDE domain YPC_2675 IPR009057 Homeobox-like domain superfamily YPC_2675 IPR012337 Ribonuclease H-like superfamily YPC_2676 IPR012337 Ribonuclease H-like superfamily YPC_2676 IPR025959 Winged helix-turn helix domain YPC_2676 IPR038717 Tc1-like transposase, DDE domain YPC_2676 IPR009057 Homeobox-like domain superfamily YPC_2677 IPR038717 Tc1-like transposase, DDE domain YPC_2677 IPR009057 Homeobox-like domain superfamily YPC_2677 IPR025959 Winged helix-turn helix domain YPC_2677 IPR012337 Ribonuclease H-like superfamily YPC_2686 IPR017729 Type VI secretion system, ATPase ClpV1 YPC_2686 IPR019489 Clp ATPase, C-terminal YPC_2686 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2686 IPR041546 ClpA/ClpB, AAA lid domain YPC_2686 IPR018368 ClpA/B, conserved site 1 YPC_2686 IPR001270 ClpA/B family YPC_2686 IPR004176 Clp, N-terminal YPC_2686 IPR036628 Clp, N-terminal domain superfamily YPC_2686 IPR003959 ATPase, AAA-type, core YPC_2686 IPR003593 AAA+ ATPase domain YPC_2688 IPR006665 OmpA-like domain YPC_2688 IPR008722 Outer membrane porin F, N-terminal YPC_2688 IPR028974 TSP type-3 repeat YPC_2688 IPR036737 OmpA-like domain superfamily YPC_2688 IPR006690 Outer membrane protein, OmpA-like, conserved site YPC_2688 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPC_2688 IPR006664 Outer membrane protein, bacterial YPC_2693 IPR001227 Acyl transferase domain superfamily YPC_2693 IPR014043 Acyl transferase YPC_2693 IPR024925 Malonyl CoA-acyl carrier protein transacylase YPC_2693 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type YPC_2693 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPC_2693 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPC_2694 IPR036736 ACP-like superfamily YPC_2694 IPR009081 Phosphopantetheine binding ACP domain YPC_2697 IPR002347 Short-chain dehydrogenase/reductase SDR YPC_2697 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPC_2697 IPR036291 NAD(P)-binding domain superfamily YPC_2700 IPR016039 Thiolase-like YPC_2700 IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain YPC_2700 IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal YPC_2701 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YPC_2701 IPR036291 NAD(P)-binding domain superfamily YPC_2701 IPR002347 Short-chain dehydrogenase/reductase SDR YPC_2701 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPC_2702 IPR000794 Beta-ketoacyl synthase YPC_2702 IPR018201 Beta-ketoacyl synthase, active site YPC_2702 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPC_2702 IPR016039 Thiolase-like YPC_2702 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPC_2702 IPR014030 Beta-ketoacyl synthase, N-terminal YPC_2702 IPR014031 Beta-ketoacyl synthase, C-terminal YPC_2703 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YPC_2703 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPC_2703 IPR029069 HotDog domain superfamily YPC_2705 IPR011294 3-hydroxybutyrate dehydrogenase YPC_2705 IPR036291 NAD(P)-binding domain superfamily YPC_2705 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPC_2705 IPR002347 Short-chain dehydrogenase/reductase SDR YPC_2706 IPR006094 FAD linked oxidase, N-terminal YPC_2706 IPR006093 Oxygen oxidoreductase covalent FAD-binding site YPC_2706 IPR016164 FAD-linked oxidase-like, C-terminal YPC_2706 IPR012951 Berberine/berberine-like YPC_2706 IPR016166 FAD-binding domain, PCMH-type YPC_2706 IPR036318 FAD-binding, type PCMH-like superfamily YPC_2706 IPR016167 FAD-binding, type PCMH, subdomain 1 YPC_2706 IPR016169 FAD-binding, type PCMH, subdomain 2 YPC_2710 IPR032874 DDE domain YPC_2710 IPR001584 Integrase, catalytic core YPC_2710 IPR036397 Ribonuclease H superfamily YPC_2710 IPR012337 Ribonuclease H-like superfamily YPC_2712 IPR042072 DsrC-like protein, C-terminal domain YPC_2712 IPR007453 Sulphur transfer protein DsrC/TusE YPC_2712 IPR025526 DsrC-like domain superfamily YPC_2713 IPR020456 Acylphosphatase YPC_2713 IPR001792 Acylphosphatase-like domain YPC_2713 IPR036046 Acylphosphatase-like domain superfamily YPC_2713 IPR028627 Acylphosphatase, bacteria YPC_2713 IPR017968 Acylphosphatase, conserved site YPC_2714 IPR002478 PUA domain YPC_2714 IPR015947 PUA-like superfamily YPC_2714 IPR036974 PUA domain superfamily YPC_2714 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_2714 IPR041532 RlmI, PUA-like domain YPC_2714 IPR023542 rRNA large subunit methyltransferase I YPC_2714 IPR019614 S-adenosylmethionine-dependent methyltransferase YPC_2715 IPR022866 Heat shock protein HspQ YPC_2715 IPR036623 Hemimethylated DNA-binding domain superfamily YPC_2715 IPR011722 Hemimethylated DNA-binding domain YPC_2717 IPR036291 NAD(P)-binding domain superfamily YPC_2717 IPR003781 CoA-binding YPC_2719 IPR018635 Uncharacterised protein family UPF0319 YPC_2720 IPR036914 Methylglyoxal synthase-like domain superfamily YPC_2720 IPR018148 Methylglyoxal synthase, active site YPC_2720 IPR004363 Methylglyoxal synthase YPC_2720 IPR011607 Methylglyoxal synthase-like domain YPC_2721 IPR014016 UvrD-like helicase, ATP-binding domain YPC_2721 IPR014017 UvrD-like DNA helicase, C-terminal YPC_2721 IPR000212 DNA helicase, UvrD/REP type YPC_2721 IPR022161 DNA helicase IV, N-terminal domain YPC_2721 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2721 IPR034739 UvrD/AddA helicase, N-terminal YPC_2722 IPR031308 Uncharacterised conserved protein UCP028777 YPC_2722 IPR005185 Inner membrane component domain YPC_2723 IPR010020 Integral membrane protein, YccS/YhfK YPC_2723 IPR010019 Integral membrane protein, YccS YPC_2723 IPR032692 Integral membrane protein YccS, N-terminal YPC_2724 IPR026256 Transcriptional regulator, TfoX/Sxy-type YPC_2724 IPR007076 TfoX, N-terminal YPC_2724 IPR007077 TfoX, C-terminal YPC_2725 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2725 IPR004596 Cell division suppressor protein, SulA YPC_2726 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPC_2726 IPR000498 Outer membrane protein OmpA-like, transmembrane domain YPC_2726 IPR036737 OmpA-like domain superfamily YPC_2726 IPR006664 Outer membrane protein, bacterial YPC_2726 IPR006665 OmpA-like domain YPC_2726 IPR002368 Outer membrane protein, OmpA YPC_2726 IPR006690 Outer membrane protein, OmpA-like, conserved site YPC_2728 IPR002686 Transposase IS200-like YPC_2728 IPR036515 Transposase IS200-like superfamily YPC_2729 IPR035087 MatP, N-terminal YPC_2729 IPR038339 MatP, N-terminal domain superfamily YPC_2729 IPR009390 Macrodomain Ter protein, MatP YPC_2729 IPR013321 Arc-type ribbon-helix-helix YPC_2729 IPR035375 MatP, C-terminal ribbon-helix-helix domain YPC_2730 IPR027065 Lon protease YPC_2730 IPR041699 Lon protease, AAA domain YPC_2730 IPR008269 Peptidase S16, Lon proteolytic domain YPC_2730 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPC_2730 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_2731 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPC_2731 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA YPC_2731 IPR029069 HotDog domain superfamily YPC_2732 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPC_2732 IPR000794 Beta-ketoacyl synthase YPC_2732 IPR018201 Beta-ketoacyl synthase, active site YPC_2732 IPR014031 Beta-ketoacyl synthase, C-terminal YPC_2732 IPR014030 Beta-ketoacyl synthase, N-terminal YPC_2732 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPC_2732 IPR016039 Thiolase-like YPC_2733 IPR036397 Ribonuclease H superfamily YPC_2733 IPR012337 Ribonuclease H-like superfamily YPC_2733 IPR006120 Resolvase, HTH domain YPC_2733 IPR001584 Integrase, catalytic core YPC_2733 IPR017894 HTH domain, IS21 transposase-type YPC_2734 IPR002611 IstB-like ATP-binding protein YPC_2734 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_2734 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2734 IPR001270 ClpA/B family YPC_2734 IPR003593 AAA+ ATPase domain YPC_2735 IPR016039 Thiolase-like YPC_2735 IPR014031 Beta-ketoacyl synthase, C-terminal YPC_2735 IPR014030 Beta-ketoacyl synthase, N-terminal YPC_2735 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPC_2735 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPC_2735 IPR000794 Beta-ketoacyl synthase YPC_2735 IPR018201 Beta-ketoacyl synthase, active site YPC_2736 IPR036515 Transposase IS200-like superfamily YPC_2736 IPR002686 Transposase IS200-like YPC_2738 IPR023200 Ribosome modulation factor domain superfamily YPC_2738 IPR007040 Ribosome modulation factor YPC_2740 IPR005586 ABC-type transport auxiliary lipoprotein component YPC_2741 IPR003399 Mce/MlaD YPC_2742 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type YPC_2742 IPR007498 Intermembrane transport protein PqiA-like YPC_2743 IPR032524 ABC transporter Uup, C-terminal YPC_2743 IPR003439 ABC transporter-like YPC_2743 IPR017871 ABC transporter, conserved site YPC_2743 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2743 IPR003593 AAA+ ATPase domain YPC_2743 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily YPC_2743 IPR032781 ABC-transporter extension domain YPC_2744 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_2744 IPR019614 S-adenosylmethionine-dependent methyltransferase YPC_2744 IPR000241 Putative RNA methylase domain YPC_2744 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPC_2744 IPR017244 Ribosomal RNA large subunit methyltransferase K/L YPC_2744 IPR004114 THUMP domain YPC_2745 IPR011037 Pyruvate kinase-like, insert domain superfamily YPC_2745 IPR012675 Beta-grasp domain superfamily YPC_2745 IPR005303 MOSC, N-terminal beta barrel YPC_2745 IPR036010 2Fe-2S ferredoxin-like superfamily YPC_2745 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPC_2745 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPC_2745 IPR005302 Molybdenum cofactor sulfurase, C-terminal YPC_2746 IPR009809 Cell division protein ZapC YPC_2747 IPR013785 Aldolase-type TIM barrel YPC_2747 IPR001295 Dihydroorotate dehydrogenase, conserved site YPC_2747 IPR005719 Dihydroorotate dehydrogenase, class 2 YPC_2747 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 YPC_2747 IPR005720 Dihydroorotate dehydrogenase domain YPC_2749 IPR012779 Peptidase M1, alanyl aminopeptidase YPC_2749 IPR014782 Peptidase M1, membrane alanine aminopeptidase YPC_2749 IPR027268 Peptidase M4/M1, CTD superfamily YPC_2749 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily YPC_2749 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal YPC_2749 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily YPC_2749 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold YPC_2749 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase YPC_2749 IPR042097 Aminopeptidase N-like , N-terminal YPC_2752 IPR007229 Nicotinate phosphoribosyltransferase family YPC_2752 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase YPC_2752 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal YPC_2752 IPR006406 Nicotinate phosphoribosyltransferase YPC_2752 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain YPC_2753 IPR006195 Aminoacyl-tRNA synthetase, class II YPC_2753 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPC_2753 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb YPC_2753 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPC_2753 IPR004522 Asparagine-tRNA ligase YPC_2753 IPR012340 Nucleic acid-binding, OB-fold YPC_2755 IPR013793 Porin, Gram-negative type, conserved site YPC_2755 IPR001702 Porin, Gram-negative type YPC_2755 IPR001897 Porin, gammaproteobacterial YPC_2755 IPR033900 Porin domain, Gram-negative type YPC_2755 IPR023614 Porin domain superfamily YPC_2756 IPR004839 Aminotransferase, class I/classII YPC_2756 IPR000796 Aspartate/other aminotransferase YPC_2756 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YPC_2756 IPR015424 Pyridoxal phosphate-dependent transferase YPC_2756 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_2756 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_2758 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPC_2758 IPR001279 Metallo-beta-lactamase YPC_2759 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily YPC_2759 IPR006311 Twin-arginine translocation pathway, signal sequence YPC_2759 IPR010275 Protein of unknown function DUF882 YPC_2760 IPR002477 Peptidoglycan binding-like YPC_2760 IPR005490 L,D-transpeptidase catalytic domain YPC_2760 IPR038063 L,D-transpeptidase catalytic domain-like YPC_2760 IPR036365 PGBD-like superfamily YPC_2763 IPR007406 MukB, N-terminal domain YPC_2763 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2763 IPR012090 Chromosome partition protein MukB YPC_2763 IPR032520 MukB, hinge domain YPC_2764 IPR042038 MukE, N-terminal domain YPC_2764 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE YPC_2764 IPR042037 MukE, C-terminal domain YPC_2765 IPR033441 Chromosome partition protein MukF, C-terminal domain YPC_2765 IPR036141 MukF, middle domain superfamily YPC_2765 IPR005582 Chromosome partition protein MukF YPC_2765 IPR036390 Winged helix DNA-binding domain superfamily YPC_2765 IPR038198 MukF, C-terminal domain superfamily YPC_2765 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2765 IPR033440 Chromosome partition protein MukF, middle domain YPC_2765 IPR033439 Chromosome partition protein MukF, winged-helix domain YPC_2765 IPR010916 TonB box, conserved site YPC_2766 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_2766 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase YPC_2768 IPR002575 Aminoglycoside phosphotransferase YPC_2768 IPR011009 Protein kinase-like domain superfamily YPC_2769 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase YPC_2769 IPR003329 Acylneuraminate cytidylyltransferase YPC_2769 IPR029044 Nucleotide-diphospho-sugar transferases YPC_2770 IPR005651 Trm112-like YPC_2772 IPR012156 Cold shock, CspA YPC_2772 IPR011129 Cold shock domain YPC_2772 IPR019844 Cold-shock (CSD) domain YPC_2772 IPR012340 Nucleic acid-binding, OB-fold YPC_2772 IPR002059 Cold-shock protein, DNA-binding YPC_2773 IPR009770 Domain of unknown function DUF1338 YPC_2774 IPR003758 Tetraacyldisaccharide 4'-kinase YPC_2774 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2775 IPR003593 AAA+ ATPase domain YPC_2775 IPR011917 ABC transporter, lipid A export, MsbA YPC_2775 IPR017871 ABC transporter, conserved site YPC_2775 IPR003439 ABC transporter-like YPC_2775 IPR039421 Type I protein exporter YPC_2775 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPC_2775 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2775 IPR011527 ABC transporter type 1, transmembrane domain YPC_2776 IPR035681 ComA-like, MBL domain YPC_2776 IPR004477 ComEC/Rec2-related protein YPC_2776 IPR004797 Competence protein ComEC/Rec2 YPC_2776 IPR001279 Metallo-beta-lactamase YPC_2776 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPC_2778 IPR000119 Histone-like DNA-binding protein YPC_2778 IPR020816 Histone-like DNA-binding protein, conserved site YPC_2778 IPR005685 Integration host factor, beta subunit YPC_2778 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily YPC_2779 IPR003029 S1 domain YPC_2779 IPR022967 RNA-binding domain, S1 YPC_2779 IPR000110 Ribosomal protein S1 YPC_2779 IPR012340 Nucleic acid-binding, OB-fold YPC_2780 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2780 IPR011994 Cytidylate kinase domain YPC_2780 IPR003136 Cytidylate kinase YPC_2781 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YPC_2781 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site YPC_2781 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase YPC_2781 IPR001986 Enolpyruvate transferase domain YPC_2781 IPR036968 Enolpyruvate transferase domain superfamily YPC_2782 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPC_2782 IPR000192 Aminotransferase class V domain YPC_2782 IPR022278 Phosphoserine aminotransferase YPC_2782 IPR015424 Pyridoxal phosphate-dependent transferase YPC_2782 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_2782 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_2785 IPR006034 Asparaginase/glutaminase-like YPC_2785 IPR004550 L-asparaginase, type II YPC_2785 IPR040919 Asparaginase/glutaminase, C-terminal YPC_2785 IPR027473 L-asparaginase, C-terminal YPC_2785 IPR027474 L-asparaginase, N-terminal YPC_2785 IPR037152 L-asparaginase, N-terminal domain superfamily YPC_2785 IPR027475 Asparaginase/glutaminase, active site 2 YPC_2785 IPR020827 Asparaginase/glutaminase, active site 1 YPC_2785 IPR036152 Asparaginase/glutaminase-like superfamily YPC_2786 IPR003776 YcaO-like domain YPC_2786 IPR041080 YcaO cyclodehydratase, C-terminal YPC_2788 IPR000292 Formate/nitrite transporter YPC_2788 IPR024002 Formate/nitrite transporter, conserved site YPC_2788 IPR023271 Aquaporin-like YPC_2788 IPR023999 Formate transporter FocA, putative YPC_2789 IPR005949 Formate acetyltransferase YPC_2789 IPR004184 Pyruvate formate lyase domain YPC_2789 IPR001150 Glycine radical domain YPC_2789 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPC_2791 IPR001989 Radical-activating enzyme, conserved site YPC_2791 IPR013785 Aldolase-type TIM barrel YPC_2791 IPR007197 Radical SAM YPC_2791 IPR034457 Organic radical-activating enzymes YPC_2791 IPR012838 Pyruvate formate-lyase 1 activating enzyme YPC_2791 IPR034465 Pyruvate formate-lyase activase YPC_2791 IPR012839 Organic radical enzyme activase YPC_2792 IPR011701 Major facilitator superfamily YPC_2792 IPR023745 MSF-type transporter, YcaD YPC_2792 IPR036259 MFS transporter superfamily YPC_2792 IPR020846 Major facilitator superfamily domain YPC_2793 IPR017894 HTH domain, IS21 transposase-type YPC_2793 IPR001584 Integrase, catalytic core YPC_2793 IPR036397 Ribonuclease H superfamily YPC_2793 IPR012337 Ribonuclease H-like superfamily YPC_2793 IPR006120 Resolvase, HTH domain YPC_2794 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_2794 IPR001270 ClpA/B family YPC_2794 IPR002611 IstB-like ATP-binding protein YPC_2794 IPR003593 AAA+ ATPase domain YPC_2794 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2795 IPR011701 Major facilitator superfamily YPC_2795 IPR020846 Major facilitator superfamily domain YPC_2795 IPR036259 MFS transporter superfamily YPC_2795 IPR023745 MSF-type transporter, YcaD YPC_2796 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm YPC_2796 IPR033729 Serine-tRNA ligase catalytic core domain YPC_2796 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily YPC_2796 IPR015866 Serine-tRNA synthetase, type1, N-terminal YPC_2796 IPR006195 Aminoacyl-tRNA synthetase, class II YPC_2796 IPR002317 Serine-tRNA ligase, type1 YPC_2796 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) YPC_2797 IPR021886 MgsA AAA+ ATPase C-terminal YPC_2797 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2797 IPR003593 AAA+ ATPase domain YPC_2797 IPR032423 AAA C-terminal domain YPC_2797 IPR003959 ATPase, AAA-type, core YPC_2797 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPC_2798 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria YPC_2798 IPR004564 Outer membrane lipoprotein carrier protein LolA-like YPC_2798 IPR029046 Lipoprotein localisation LolA/LolB/LppX YPC_2799 IPR041027 FtsK alpha domain YPC_2799 IPR002543 FtsK domain YPC_2799 IPR018541 FtsK gamma domain YPC_2799 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2799 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2799 IPR025199 DNA translocase FtsK, 4TM region YPC_2799 IPR036390 Winged helix DNA-binding domain superfamily YPC_2801 IPR011991 ArsR-like helix-turn-helix domain YPC_2801 IPR000485 AsnC-type HTH domain YPC_2801 IPR011008 Dimeric alpha-beta barrel YPC_2801 IPR019888 Transcription regulator AsnC-type YPC_2801 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPC_2801 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPC_2801 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2801 IPR036390 Winged helix DNA-binding domain superfamily YPC_2802 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_2802 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site YPC_2802 IPR023753 FAD/NAD(P)-binding domain YPC_2802 IPR005982 Thioredoxin reductase YPC_2804 IPR003593 AAA+ ATPase domain YPC_2804 IPR011527 ABC transporter type 1, transmembrane domain YPC_2804 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPC_2804 IPR003439 ABC transporter-like YPC_2804 IPR017871 ABC transporter, conserved site YPC_2804 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2804 IPR039421 Type I protein exporter YPC_2804 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD YPC_2805 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2805 IPR017871 ABC transporter, conserved site YPC_2805 IPR003439 ABC transporter-like YPC_2805 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC YPC_2805 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPC_2805 IPR011527 ABC transporter type 1, transmembrane domain YPC_2805 IPR003593 AAA+ ATPase domain YPC_2809 IPR004368 Translation initiation factor IF-1 YPC_2809 IPR022967 RNA-binding domain, S1 YPC_2809 IPR006196 RNA-binding domain, S1, IF1 type YPC_2809 IPR012340 Nucleic acid-binding, OB-fold YPC_2814 IPR022935 ATP-dependent Clp protease adaptor protein ClpS YPC_2814 IPR003769 Adaptor protein ClpS, core YPC_2814 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YPC_2816 IPR012751 CspD, cold shock YPC_2816 IPR002059 Cold-shock protein, DNA-binding YPC_2816 IPR019844 Cold-shock (CSD) domain YPC_2816 IPR011129 Cold shock domain YPC_2816 IPR012156 Cold shock, CspA YPC_2816 IPR012340 Nucleic acid-binding, OB-fold YPC_2817 IPR003593 AAA+ ATPase domain YPC_2817 IPR003838 ABC transporter permease protein domain YPC_2817 IPR003439 ABC transporter-like YPC_2817 IPR017871 ABC transporter, conserved site YPC_2817 IPR017911 ABC transporter, macrolide export, ATP-binding domain YPC_2817 IPR025857 MacB-like periplasmic core domain YPC_2817 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2818 IPR006143 RND efflux pump, membrane fusion protein YPC_2818 IPR030190 Macrolide export protein MacA YPC_2818 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPC_2821 IPR007488 Protein of unknown function DUF535 YPC_2822 IPR022602 Protein of unknown function DUF2813 YPC_2822 IPR006171 TOPRIM domain YPC_2822 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2822 IPR034139 OLD protein-like, TOPRIM domain YPC_2823 IPR005642 Lysine exporter LysO YPC_2824 IPR010048 Hydroxylamine reductase YPC_2824 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase YPC_2824 IPR016100 Prismane, alpha-bundle YPC_2824 IPR016099 Prismane-like, alpha/beta-sandwich YPC_2824 IPR011254 Prismane-like superfamily YPC_2825 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPC_2825 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPC_2825 IPR036010 2Fe-2S ferredoxin-like superfamily YPC_2825 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPC_2825 IPR012675 Beta-grasp domain superfamily YPC_2825 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPC_2825 IPR017927 FAD-binding domain, ferredoxin reductase-type YPC_2825 IPR017938 Riboflavin synthase-like beta-barrel YPC_2825 IPR000951 Phthalate dioxygenase reductase YPC_2826 IPR012000 Thiamine pyrophosphate enzyme, central domain YPC_2826 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPC_2826 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPC_2826 IPR000399 TPP-binding enzyme, conserved site YPC_2826 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPC_2826 IPR029061 Thiamin diphosphate-binding fold YPC_2828 IPR023603 Threonine aldolase YPC_2828 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_2828 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_2828 IPR015424 Pyridoxal phosphate-dependent transferase YPC_2828 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase YPC_2829 IPR016040 NAD(P)-binding domain YPC_2829 IPR036291 NAD(P)-binding domain superfamily YPC_2829 IPR021295 Protein of unknown function DUF2867 YPC_2830 IPR001509 NAD-dependent epimerase/dehydratase YPC_2830 IPR036291 NAD(P)-binding domain superfamily YPC_2831 IPR024289 Domain of unknown function DUF3828 YPC_2833 IPR008240 Chorismate mutase, periplasmic YPC_2833 IPR002701 Chorismate mutase II, prokaryotic-type YPC_2833 IPR036263 Chorismate mutase type II superfamily YPC_2834 IPR003439 ABC transporter-like YPC_2834 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPC_2834 IPR017871 ABC transporter, conserved site YPC_2834 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2834 IPR003593 AAA+ ATPase domain YPC_2835 IPR001320 Ionotropic glutamate receptor YPC_2835 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPC_2835 IPR018313 Solute-binding protein family 3, conserved site YPC_2835 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPC_2836 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_2836 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPC_2836 IPR035906 MetI-like superfamily YPC_2837 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_2837 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPC_2837 IPR035906 MetI-like superfamily YPC_2839 IPR000620 EamA domain YPC_2840 IPR016935 Opine metallophore dehydrogenase YPC_2840 IPR036291 NAD(P)-binding domain superfamily YPC_2841 IPR036291 NAD(P)-binding domain superfamily YPC_2841 IPR004298 Nicotianamine synthase YPC_2842 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2842 IPR017871 ABC transporter, conserved site YPC_2842 IPR003439 ABC transporter-like YPC_2842 IPR003593 AAA+ ATPase domain YPC_2849 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPC_2849 IPR018313 Solute-binding protein family 3, conserved site YPC_2849 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPC_2849 IPR001320 Ionotropic glutamate receptor YPC_2850 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC YPC_2850 IPR030390 RNA methyltransferase TrmA, active site YPC_2850 IPR030391 RNA methyltransferase TrmA, conserved site YPC_2850 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_2850 IPR010280 (Uracil-5)-methyltransferase family YPC_2851 IPR019703 Protein of unknown function DUF2593 YPC_2852 IPR035906 MetI-like superfamily YPC_2852 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_2853 IPR035906 MetI-like superfamily YPC_2853 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_2854 IPR003593 AAA+ ATPase domain YPC_2854 IPR003439 ABC transporter-like YPC_2854 IPR017871 ABC transporter, conserved site YPC_2854 IPR008995 Molybdate/tungstate binding, C-terminal YPC_2854 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2854 IPR013611 Transport-associated OB, type 2 YPC_2854 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPC_2855 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein YPC_2855 IPR006059 Bacterial extracellular solute-binding protein YPC_2856 IPR019660 Putative sensory transduction regulator YbjN YPC_2857 IPR010815 Protein of unknown function DUF1418 YPC_2858 IPR011767 Glutaredoxin active site YPC_2858 IPR002109 Glutaredoxin YPC_2858 IPR014025 Glutaredoxin subgroup YPC_2858 IPR011902 Glutaredoxin, GrxA YPC_2858 IPR036249 Thioredoxin-like superfamily YPC_2859 IPR006512 YidE/YbjL duplication YPC_2859 IPR023017 Transport protein YbjL, putative YPC_2859 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YPC_2859 IPR006037 Regulator of K+ conductance, C-terminal YPC_2862 IPR033879 Undecaprenyl-diphosphatase YPC_2862 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YPC_2862 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPC_2863 IPR011343 Deoxyribose-phosphate aldolase YPC_2863 IPR013785 Aldolase-type TIM barrel YPC_2863 IPR028581 Deoxyribose-phosphate aldolase type I YPC_2863 IPR002915 DeoC/FbaB/ lacD aldolase YPC_2864 IPR014036 DeoR C-terminal sensor domain YPC_2864 IPR037171 NagB/RpiA transferase-like YPC_2864 IPR001034 DeoR-type HTH domain YPC_2864 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPC_2867 IPR004694 Hydroxy amino acid transporter YPC_2868 IPR004694 Hydroxy amino acid transporter YPC_2870 IPR015956 Penicillin-binding protein, C-terminal domain superfamily YPC_2870 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPC_2870 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YPC_2870 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily YPC_2870 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPC_2870 IPR012338 Beta-lactamase/transpeptidase-like YPC_2871 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_2871 IPR035906 MetI-like superfamily YPC_2872 IPR003439 ABC transporter-like YPC_2872 IPR017871 ABC transporter, conserved site YPC_2872 IPR018449 NIL domain YPC_2872 IPR003593 AAA+ ATPase domain YPC_2872 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain YPC_2872 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal YPC_2872 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2872 IPR026253 Methionine import ATP-binding protein MetN YPC_2873 IPR004872 Lipoprotein NlpA family YPC_2875 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like YPC_2875 IPR036412 HAD-like superfamily YPC_2875 IPR023214 HAD superfamily YPC_2877 IPR004046 Glutathione S-transferase, C-terminal YPC_2877 IPR004045 Glutathione S-transferase, N-terminal YPC_2877 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPC_2877 IPR010987 Glutathione S-transferase, C-terminal-like YPC_2877 IPR036249 Thioredoxin-like superfamily YPC_2878 IPR000531 TonB-dependent receptor-like, beta-barrel YPC_2878 IPR037066 TonB-dependent receptor, plug domain superfamily YPC_2878 IPR010917 TonB-dependent receptor, conserved site YPC_2878 IPR012910 TonB-dependent receptor, plug domain YPC_2878 IPR039426 Vitamin B12 transporter BtuB-like YPC_2878 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPC_2878 IPR010916 TonB box, conserved site YPC_2879 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2879 IPR015863 ABC transporter, hemin import, HmuV YPC_2879 IPR003439 ABC transporter-like YPC_2879 IPR003593 AAA+ ATPase domain YPC_2880 IPR000522 ABC transporter, permease protein, BtuC-like YPC_2880 IPR037294 ABC transporter, BtuC-like YPC_2884 IPR005119 LysR, substrate-binding YPC_2884 IPR036390 Winged helix DNA-binding domain superfamily YPC_2884 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2884 IPR000847 Transcription regulator HTH, LysR YPC_2885 IPR018383 Uncharacterised protein family UPF0324, prokaryote YPC_2885 IPR004630 Uncharacterised protein family UPF0324, bacteria YPC_2886 IPR013022 Xylose isomerase-like, TIM barrel domain YPC_2886 IPR036237 Xylose isomerase-like superfamily YPC_2886 IPR018246 AP endonuclease 2, zinc binding site YPC_2886 IPR001719 AP endonuclease 2 YPC_2887 IPR025885 PapC, N-terminal domain YPC_2887 IPR037224 PapC, N-terminal domain superfamily YPC_2887 IPR018030 Fimbrial membrane usher, conserved site YPC_2887 IPR000015 Outer membrane usher protein YPC_2887 IPR025949 PapC-like, C-terminal domain YPC_2887 IPR042186 Outer membrane usher protein FimD, plug domain YPC_2888 IPR001829 Pili assembly chaperone, bacterial YPC_2888 IPR016147 Pili assembly chaperone, N-terminal YPC_2888 IPR008962 PapD-like superfamily YPC_2888 IPR018046 Pili assembly chaperone, conserved site YPC_2888 IPR013783 Immunoglobulin-like fold YPC_2888 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPC_2888 IPR016148 Pili assembly chaperone, C-terminal YPC_2890 IPR035182 Protein of unknown function PsaF YPC_2891 IPR001867 OmpR/PhoB-type DNA-binding domain YPC_2891 IPR016032 Signal transduction response regulator, C-terminal effector YPC_2891 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2892 IPR036095 PTS system IIB component-like superfamily YPC_2892 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPC_2892 IPR013011 Phosphotransferase system, EIIB component, type 2 YPC_2892 IPR013014 Phosphotransferase system, EIIC component, type 2 YPC_2892 IPR003352 Phosphotransferase system, EIIC YPC_2892 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPC_2892 IPR006327 Phosphotransferase system, fructose IIC component YPC_2893 IPR022463 Fructose 1-phosphate kinase YPC_2893 IPR011611 Carbohydrate kinase PfkB YPC_2893 IPR029056 Ribokinase-like YPC_2893 IPR017583 Tagatose/fructose phosphokinase YPC_2893 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPC_2894 IPR016152 Phosphotransferase/anion transporter YPC_2894 IPR002178 PTS EIIA type-2 domain YPC_2894 IPR035895 HPr-like superfamily YPC_2894 IPR000032 Phosphocarrier protein HPr-like YPC_2894 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YPC_2894 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPC_2896 IPR015797 NUDIX hydrolase-like domain superfamily YPC_2896 IPR020476 NUDIX hydrolase YPC_2896 IPR000086 NUDIX hydrolase domain YPC_2896 IPR020084 NUDIX hydrolase, conserved site YPC_2897 IPR001851 ABC transporter, permease YPC_2898 IPR003593 AAA+ ATPase domain YPC_2898 IPR017871 ABC transporter, conserved site YPC_2898 IPR015861 ABC transporter, ribose import, RbsA YPC_2898 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2898 IPR003439 ABC transporter-like YPC_2899 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2899 IPR003593 AAA+ ATPase domain YPC_2899 IPR017871 ABC transporter, conserved site YPC_2899 IPR017917 ABC transporter, arabinose import, ATP-binding protein, AraG YPC_2899 IPR003439 ABC transporter-like YPC_2902 IPR037171 NagB/RpiA transferase-like YPC_2902 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup YPC_2902 IPR004788 Ribose 5-phosphate isomerase, type A YPC_2903 IPR018483 Carbohydrate kinase, FGGY, conserved site YPC_2903 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPC_2903 IPR006000 Xylulokinase YPC_2903 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPC_2903 IPR000577 Carbohydrate kinase, FGGY YPC_2904 IPR015590 Aldehyde dehydrogenase domain YPC_2904 IPR010102 Succinate semialdehyde dehydrogenase YPC_2904 IPR016162 Aldehyde dehydrogenase, N-terminal YPC_2904 IPR016160 Aldehyde dehydrogenase, cysteine active site YPC_2904 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPC_2904 IPR016163 Aldehyde dehydrogenase, C-terminal YPC_2904 IPR016161 Aldehyde/histidinol dehydrogenase YPC_2906 IPR006236 D-3-phosphoglycerate dehydrogenase YPC_2906 IPR036291 NAD(P)-binding domain superfamily YPC_2906 IPR002912 ACT domain YPC_2906 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPC_2906 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPC_2906 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPC_2906 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPC_2906 IPR029009 Allosteric substrate binding domain superfamily YPC_2907 IPR002347 Short-chain dehydrogenase/reductase SDR YPC_2907 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPC_2907 IPR036291 NAD(P)-binding domain superfamily YPC_2908 IPR005358 Putative zinc- or iron-chelating domain containing protein YPC_2909 IPR018227 Amino acid/polyamine transporter 2 YPC_2909 IPR013059 Tryptophan/tyrosine transporter YPC_2910 IPR012340 Nucleic acid-binding, OB-fold YPC_2910 IPR014722 Ribosomal protein L2, domain 2 YPC_2910 IPR008991 Translation protein SH3-like domain superfamily YPC_2910 IPR020599 Translation elongation factor P/YeiP YPC_2910 IPR013185 Translation elongation factor, KOW-like YPC_2910 IPR013852 Translation elongation factor P/YeiP, conserved site YPC_2910 IPR001059 Translation elongation factor P/YeiP, central YPC_2910 IPR015365 Elongation factor P, C-terminal YPC_2910 IPR011897 Translation elongation factor P-like, YeiP YPC_2911 IPR036237 Xylose isomerase-like superfamily YPC_2911 IPR004628 Mannonate dehydratase YPC_2913 IPR023027 Mannitol dehydrogenase, conserved site YPC_2913 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPC_2913 IPR000669 Mannitol dehydrogenase YPC_2913 IPR036291 NAD(P)-binding domain superfamily YPC_2913 IPR013131 Mannitol dehydrogenase, N-terminal YPC_2913 IPR013118 Mannitol dehydrogenase, C-terminal YPC_2913 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPC_2914 IPR036390 Winged helix DNA-binding domain superfamily YPC_2914 IPR011711 GntR, C-terminal YPC_2914 IPR000524 Transcription regulator HTH, GntR YPC_2914 IPR008920 Transcription regulator FadR/GntR, C-terminal YPC_2914 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2917 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2917 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YPC_2917 IPR003495 CobW/HypB/UreG, nucleotide-binding domain YPC_2918 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPC_2918 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YPC_2918 IPR032908 Lipid A 1-diphosphate synthase YPC_2920 IPR000064 Endopeptidase, NLPC/P60 domain YPC_2920 IPR038765 Papain-like cysteine peptidase superfamily YPC_2924 IPR001633 EAL domain YPC_2924 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain YPC_2924 IPR035919 EAL domain superfamily YPC_2925 IPR039424 Solute-binding protein family 5 YPC_2925 IPR030678 Peptide/nickel binding protein, MppA-type YPC_2925 IPR000914 Solute-binding protein family 5 domain YPC_2926 IPR035906 MetI-like superfamily YPC_2926 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_2927 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPC_2927 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_2927 IPR035906 MetI-like superfamily YPC_2928 IPR003593 AAA+ ATPase domain YPC_2928 IPR003439 ABC transporter-like YPC_2928 IPR017871 ABC transporter, conserved site YPC_2928 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2928 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPC_2929 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2929 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPC_2929 IPR017871 ABC transporter, conserved site YPC_2929 IPR003439 ABC transporter-like YPC_2929 IPR003593 AAA+ ATPase domain YPC_2930 IPR020489 Uncharacterised protein family YejG YPC_2932 IPR004734 Multidrug resistance protein YPC_2932 IPR011701 Major facilitator superfamily YPC_2932 IPR020846 Major facilitator superfamily domain YPC_2932 IPR036259 MFS transporter superfamily YPC_2932 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YPC_2933 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPC_2933 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain YPC_2933 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPC_2933 IPR036986 RNA-binding S4 domain superfamily YPC_2933 IPR006145 Pseudouridine synthase, RsuA/RluA YPC_2933 IPR002942 RNA-binding S4 domain YPC_2933 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPC_2934 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_2934 IPR001650 Helicase, C-terminal YPC_2934 IPR011332 Zinc-binding ribosomal protein YPC_2934 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_2934 IPR006935 Helicase/UvrB, N-terminal YPC_2935 IPR029751 Ribosomal protein L25 YPC_2935 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal YPC_2935 IPR020055 Ribosomal protein L25, short-form YPC_2935 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily YPC_2936 IPR002686 Transposase IS200-like YPC_2936 IPR036515 Transposase IS200-like superfamily YPC_2938 IPR007358 Nucleoid-associated protein NdpA YPC_2939 IPR023202 YejL-like superfamily YPC_2939 IPR009857 Uncharacterised protein family UPF0352 YPC_2940 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPC_2940 IPR000917 Sulfatase, N-terminal YPC_2940 IPR012159 Inner membrane protein YejM YPC_2940 IPR024588 Inner membrane protein YejM, N-terminal YPC_2942 IPR036624 Hcp1-like superfamily YPC_2942 IPR003615 HNH nuclease YPC_2942 IPR008514 Type VI secretion system effector, Hcp YPC_2947 IPR001360 Glycoside hydrolase family 1 YPC_2947 IPR018120 Glycoside hydrolase family 1, active site YPC_2947 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site YPC_2947 IPR017853 Glycoside hydrolase superfamily YPC_2948 IPR035472 RpiR-like, SIS domain YPC_2948 IPR009057 Homeobox-like domain superfamily YPC_2948 IPR000281 Helix-turn-helix protein RpiR YPC_2948 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2948 IPR001347 Sugar isomerase (SIS) YPC_2949 IPR011083 Phage tail collar domain YPC_2949 IPR037053 Phage tail collar domain superfamily YPC_2952 IPR006949 Baseplate protein J-like YPC_2962 IPR020287 Tail sheath protein, C-terminal domain YPC_2962 IPR007067 Tail sheath protein YPC_2962 IPR035089 Tail sheath protein, subtilisin-like domain YPC_2966 IPR013022 Xylose isomerase-like, TIM barrel domain YPC_2966 IPR036237 Xylose isomerase-like superfamily YPC_2966 IPR026040 Hydroxypyruvate isomerase-like YPC_2967 IPR037171 NagB/RpiA transferase-like YPC_2967 IPR014036 DeoR C-terminal sensor domain YPC_2967 IPR001034 DeoR-type HTH domain YPC_2967 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPC_2967 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2967 IPR036390 Winged helix DNA-binding domain superfamily YPC_2968 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPC_2968 IPR001303 Class II aldolase/adducin N-terminal YPC_2969 IPR031475 Nucleotide-binding C-terminal domain YPC_2969 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily YPC_2969 IPR042213 Nucleotide-binding, C-terminal domain superfamily YPC_2969 IPR010737 Four-carbon acid sugar kinase, N-terminal domain YPC_2970 IPR010534 Bacteriophage 933W, GpQ YPC_2971 IPR015927 Peptidase S24/S26A/S26B/S26C YPC_2971 IPR001387 Cro/C1-type helix-turn-helix domain YPC_2971 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_2971 IPR039418 LexA-like YPC_2971 IPR036286 LexA/Signal peptidase-like superfamily YPC_2973 IPR036687 DinI-like superfamily YPC_2973 IPR010391 DNA damage-inducible protein DinI-like YPC_2974 IPR020079 Peptidase A26, omptin, conserved site YPC_2974 IPR000036 Peptidase A26, omptin YPC_2974 IPR020080 Outer membrane adhesin/peptidase omptin YPC_2975 IPR004090 Chemotaxis methyl-accepting receptor YPC_2975 IPR000727 Target SNARE coiled-coil homology domain YPC_2975 IPR033479 Double Cache domain 1 YPC_2975 IPR003660 HAMP domain YPC_2975 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPC_2975 IPR029151 Periplasmic sensor-like domain superfamily YPC_2976 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPC_2976 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D YPC_2976 IPR001279 Metallo-beta-lactamase YPC_2977 IPR018043 Sodium:galactoside symporter, conserved site YPC_2977 IPR001927 Sodium:galactoside symporter YPC_2977 IPR036259 MFS transporter superfamily YPC_2977 IPR039672 Lactose permease-like YPC_2979 IPR012338 Beta-lactamase/transpeptidase-like YPC_2979 IPR001466 Beta-lactamase-related YPC_2985 IPR001897 Porin, gammaproteobacterial YPC_2985 IPR001702 Porin, Gram-negative type YPC_2985 IPR023614 Porin domain superfamily YPC_2985 IPR013793 Porin, Gram-negative type, conserved site YPC_2987 IPR020846 Major facilitator superfamily domain YPC_2987 IPR011701 Major facilitator superfamily YPC_2987 IPR036259 MFS transporter superfamily YPC_2988 IPR036641 HPT domain superfamily YPC_2988 IPR030861 Phosphotransferase RcsD YPC_2988 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_2988 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain YPC_2988 IPR038616 Phosphotransferase RcsD, RcsD-ABL domain superfamily YPC_2988 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPC_2988 IPR003594 Histidine kinase/HSP90-like ATPase YPC_2988 IPR005467 Histidine kinase domain YPC_2989 IPR003594 Histidine kinase/HSP90-like ATPase YPC_2989 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_2989 IPR005467 Histidine kinase domain YPC_2989 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain YPC_2989 IPR038616 Phosphotransferase RcsD, RcsD-ABL domain superfamily YPC_2989 IPR030861 Phosphotransferase RcsD YPC_2989 IPR036641 HPT domain superfamily YPC_2989 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPC_2990 IPR030864 Transcriptional regulatory protein RcsB YPC_2990 IPR000792 Transcription regulator LuxR, C-terminal YPC_2990 IPR001789 Signal transduction response regulator, receiver domain YPC_2990 IPR016032 Signal transduction response regulator, C-terminal effector YPC_2990 IPR011006 CheY-like superfamily YPC_2990 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_2991 IPR001789 Signal transduction response regulator, receiver domain YPC_2991 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_2991 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_2991 IPR038388 RcsC, C-terminal domain superfamily YPC_2991 IPR003594 Histidine kinase/HSP90-like ATPase YPC_2991 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_2991 IPR011006 CheY-like superfamily YPC_2991 IPR005467 Histidine kinase domain YPC_2991 IPR030856 Sensor histidine kinase RcsC YPC_2991 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal YPC_2991 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_2993 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat YPC_2993 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YPC_2993 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YPC_2993 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal YPC_2993 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta YPC_2993 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily YPC_2993 IPR005743 DNA gyrase, subunit A YPC_2994 IPR010233 Ubiquinone biosynthesis O-methyltransferase YPC_2994 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_2995 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YPC_2995 IPR013346 Ribonucleotide reductase, class I , alpha subunit YPC_2995 IPR005144 ATP-cone domain YPC_2995 IPR039718 Ribonucleoside-diphosphate reductase large subunit YPC_2995 IPR000788 Ribonucleotide reductase large subunit, C-terminal YPC_2995 IPR013509 Ribonucleotide reductase large subunit, N-terminal YPC_2996 IPR030475 Ribonucleotide reductase small subunit, acitve site YPC_2996 IPR000358 Ribonucleotide reductase small subunit family YPC_2996 IPR012348 Ribonucleotide reductase-like YPC_2996 IPR033909 Ribonucleotide reductase small subunit YPC_2996 IPR009078 Ferritin-like superfamily YPC_2997 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPC_2997 IPR036010 2Fe-2S ferredoxin-like superfamily YPC_2997 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPC_2997 IPR012675 Beta-grasp domain superfamily YPC_2999 IPR036198 Ecotin superfamily YPC_2999 IPR005658 Proteinase inhibitor I11, ecotin YPC_2999 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria YPC_3000 IPR036425 MoaB/Mog-like domain superfamily YPC_3000 IPR001453 MoaB/Mog domain YPC_3000 IPR036653 CinA-like, C-terminal YPC_3000 IPR008135 Competence-induced protein CinA YPC_3002 IPR018227 Amino acid/polyamine transporter 2 YPC_3002 IPR013061 Tryptophan/tryrosine permease, conserved site YPC_3002 IPR013059 Tryptophan/tyrosine transporter YPC_3003 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPC_3003 IPR009998 YfaZ YPC_3003 IPR023614 Porin domain superfamily YPC_3004 IPR011614 Catalase core domain YPC_3004 IPR037060 Catalase core domain superfamily YPC_3004 IPR010582 Catalase immune-responsive domain YPC_3004 IPR020835 Catalase superfamily YPC_3004 IPR040333 Catalase, clade 3 YPC_3004 IPR024708 Catalase active site YPC_3004 IPR002226 Catalase haem-binding site YPC_3004 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 YPC_3004 IPR018028 Catalase, mono-functional, haem-containing YPC_3005 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type YPC_3005 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3005 IPR011545 DEAD/DEAH box helicase domain YPC_3005 IPR001650 Helicase, C-terminal YPC_3005 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_3005 IPR006554 Helicase-like, DEXD box c2 type YPC_3005 IPR010614 DEAD2 YPC_3005 IPR006555 ATP-dependent helicase, C-terminal YPC_3005 IPR039000 ATP-dependent DNA helicase DinG YPC_3006 IPR001702 Porin, Gram-negative type YPC_3006 IPR001897 Porin, gammaproteobacterial YPC_3006 IPR033900 Porin domain, Gram-negative type YPC_3006 IPR013793 Porin, Gram-negative type, conserved site YPC_3006 IPR023614 Porin domain superfamily YPC_3007 IPR000620 EamA domain YPC_3007 IPR004779 Carboxylate/Amino Acid/Amine Transporter YPC_3009 IPR011193 Ornithine/lysine/arginine decarboxylase YPC_3009 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal YPC_3009 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily YPC_3009 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal YPC_3009 IPR015424 Pyridoxal phosphate-dependent transferase YPC_3009 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_3009 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_3009 IPR000310 Orn/Lys/Arg decarboxylase, major domain YPC_3010 IPR002293 Amino acid/polyamine transporter I YPC_3011 IPR002293 Amino acid/polyamine transporter I YPC_3012 IPR035906 MetI-like superfamily YPC_3012 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_3013 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3013 IPR017871 ABC transporter, conserved site YPC_3013 IPR003439 ABC transporter-like YPC_3013 IPR003593 AAA+ ATPase domain YPC_3014 IPR035906 MetI-like superfamily YPC_3014 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_3015 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPC_3016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPC_3017 IPR036873 Rhodanese-like domain superfamily YPC_3017 IPR001307 Thiosulphate sulfurtransferase, conserved site YPC_3017 IPR001763 Rhodanese-like domain YPC_3020 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3020 IPR017871 ABC transporter, conserved site YPC_3020 IPR003439 ABC transporter-like YPC_3020 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein YPC_3020 IPR003593 AAA+ ATPase domain YPC_3021 IPR003593 AAA+ ATPase domain YPC_3021 IPR003439 ABC transporter-like YPC_3021 IPR017871 ABC transporter, conserved site YPC_3021 IPR005876 Cobalt transport protein ATP-binding subunit YPC_3021 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3023 IPR001851 ABC transporter, permease YPC_3024 IPR003593 AAA+ ATPase domain YPC_3024 IPR002197 DNA binding HTH domain, Fis-type YPC_3024 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3024 IPR000014 PAS domain YPC_3024 IPR028082 Periplasmic binding protein-like I YPC_3024 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPC_3024 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPC_3024 IPR009057 Homeobox-like domain superfamily YPC_3024 IPR002078 RNA polymerase sigma factor 54 interaction domain YPC_3024 IPR025944 Sigma-54 interaction domain, conserved site YPC_3025 IPR009921 Domain of unknown function DUF1456 YPC_3026 IPR005769 ABC transporter, permease PhnE/PtxC YPC_3026 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_3026 IPR035906 MetI-like superfamily YPC_3028 IPR035906 MetI-like superfamily YPC_3028 IPR005769 ABC transporter, permease PhnE/PtxC YPC_3028 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_3029 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein YPC_3030 IPR017871 ABC transporter, conserved site YPC_3030 IPR003439 ABC transporter-like YPC_3030 IPR003593 AAA+ ATPase domain YPC_3030 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3030 IPR012693 ABC transporter, phosphonate import, PhnC YPC_3031 IPR007341 Transglycosylase-associated protein YPC_3034 IPR003615 HNH nuclease YPC_3034 IPR002711 HNH endonuclease YPC_3035 IPR023577 CYTH domain YPC_3035 IPR033469 CYTH-like domain superfamily YPC_3035 IPR008173 Adenylyl cyclase CyaB YPC_3037 IPR036318 FAD-binding, type PCMH-like superfamily YPC_3037 IPR012256 D-lactate dehydrogenase YPC_3037 IPR016167 FAD-binding, type PCMH, subdomain 1 YPC_3037 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 YPC_3037 IPR016164 FAD-linked oxidase-like, C-terminal YPC_3037 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal YPC_3037 IPR006094 FAD linked oxidase, N-terminal YPC_3037 IPR016166 FAD-binding domain, PCMH-type YPC_3037 IPR016169 FAD-binding, type PCMH, subdomain 2 YPC_3037 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 YPC_3038 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPC_3038 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPC_3038 IPR012338 Beta-lactamase/transpeptidase-like YPC_3041 IPR018517 tRNA-dihydrouridine synthase, conserved site YPC_3041 IPR013785 Aldolase-type TIM barrel YPC_3041 IPR042270 tRNA-dihydrouridine(16) synthase, C-terminal YPC_3041 IPR032886 tRNA-dihydrouridine(16) synthase YPC_3041 IPR035587 DUS-like, FMN-binding domain YPC_3041 IPR001269 tRNA-dihydrouridine synthase YPC_3045 IPR028622 ATP-dependent RNA helicase RhlE YPC_3045 IPR011545 DEAD/DEAH box helicase domain YPC_3045 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3045 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPC_3045 IPR014014 RNA helicase, DEAD-box type, Q motif YPC_3045 IPR001650 Helicase, C-terminal YPC_3045 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_3046 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal YPC_3046 IPR003346 Transposase, IS116/IS110/IS902 YPC_3047 IPR001207 Transposase, mutator type YPC_3053 IPR036624 Hcp1-like superfamily YPC_3053 IPR008514 Type VI secretion system effector, Hcp YPC_3054 IPR002686 Transposase IS200-like YPC_3054 IPR036515 Transposase IS200-like superfamily YPC_3056 IPR001674 GMP synthase, C-terminal YPC_3056 IPR022310 NAD/GMP synthase YPC_3056 IPR025777 GMP synthetase ATP pyrophosphatase domain YPC_3056 IPR022955 GMP synthase YPC_3056 IPR017926 Glutamine amidotransferase YPC_3056 IPR004739 GMP synthase, glutamine amidotransferase YPC_3056 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_3056 IPR029062 Class I glutamine amidotransferase-like YPC_3058 IPR013785 Aldolase-type TIM barrel YPC_3058 IPR000644 CBS domain YPC_3058 IPR005990 Inosine-5'-monophosphate dehydrogenase YPC_3058 IPR015875 IMP dehydrogenase / GMP reductase, conserved site YPC_3058 IPR001093 IMP dehydrogenase/GMP reductase YPC_3059 IPR025824 OB-fold nucleic acid binding domain YPC_3059 IPR020579 Exonuclease VII, large subunit, C-terminal YPC_3059 IPR003753 Exonuclease VII, large subunit YPC_3060 IPR029037 YfgJ-like YPC_3060 IPR010807 Protein of unknown function DUF1407 YPC_3064 IPR006073 GTP binding domain YPC_3064 IPR005225 Small GTP-binding protein domain YPC_3064 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3064 IPR016484 GTP-binding protein EngA YPC_3064 IPR032859 GTPase Der, C-terminal KH-domain-like YPC_3064 IPR031166 EngA-type guanine nucleotide-binding (G) domain YPC_3064 IPR015946 K homology domain-like, alpha/beta YPC_3065 IPR017687 Outer membrane protein assembly factor BamB YPC_3065 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YPC_3065 IPR002372 Pyrrolo-quinoline quinone repeat YPC_3065 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily YPC_3065 IPR015943 WD40/YVTN repeat-like-containing domain superfamily YPC_3066 IPR011990 Tetratricopeptide-like helical domain superfamily YPC_3066 IPR018704 Tetratricopeptide repeat-like domain YPC_3066 IPR026039 Uncharacterised protein family UPF0070 YPC_3067 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit YPC_3067 IPR033656 Histidyl-anticodon-binding YPC_3067 IPR036621 Anticodon-binding domain superfamily YPC_3067 IPR004154 Anticodon-binding YPC_3067 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain YPC_3067 IPR015807 Histidine-tRNA ligase YPC_3067 IPR006195 Aminoacyl-tRNA synthetase, class II YPC_3069 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial YPC_3069 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YPC_3069 IPR036849 Enolase-like, C-terminal domain superfamily YPC_3069 IPR011005 Dihydropteroate synthase-like YPC_3070 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_3070 IPR025194 Domain of unknown function DUF4115 YPC_3070 IPR001387 Cro/C1-type helix-turn-helix domain YPC_3070 IPR023690 Cytoskeleton protein RodZ YPC_3072 IPR007197 Radical SAM YPC_3072 IPR013785 Aldolase-type TIM barrel YPC_3072 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr YPC_3072 IPR040072 Methyltransferase (Class A) YPC_3072 IPR027492 Dual-specificity RNA methyltransferase RlmN YPC_3073 IPR023005 Nucleoside diphosphate kinase, active site YPC_3073 IPR001564 Nucleoside diphosphate kinase YPC_3073 IPR036850 Nucleoside diphosphate kinase-like domain superfamily YPC_3073 IPR034907 Nucleoside diphosphate kinase-like domain YPC_3077 IPR004899 Pertactin, central region YPC_3077 IPR006315 Outer membrane autotransporter barrel YPC_3077 IPR005546 Autotransporter beta-domain YPC_3077 IPR030930 Adhesin of bacterial autotransporter system YPC_3077 IPR011050 Pectin lyase fold/virulence factor YPC_3077 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPC_3077 IPR036709 Autotransporter beta-domain superfamily YPC_3077 IPR003991 Pertactin virulence factor family YPC_3080 IPR030930 Adhesin of bacterial autotransporter system YPC_3080 IPR005546 Autotransporter beta-domain YPC_3080 IPR004899 Pertactin, central region YPC_3080 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPC_3080 IPR011050 Pectin lyase fold/virulence factor YPC_3080 IPR036709 Autotransporter beta-domain superfamily YPC_3080 IPR003991 Pertactin virulence factor family YPC_3080 IPR006315 Outer membrane autotransporter barrel YPC_3083 IPR009839 SseB protein N-terminal domain YPC_3083 IPR027945 SseB protein, C-terminal YPC_3084 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal YPC_3084 IPR008330 Peptidase M17, peptidase B YPC_3084 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B YPC_3084 IPR001346 Interferon regulatory factor DNA-binding domain YPC_3086 IPR036762 IscX-like superfamily YPC_3086 IPR007479 ISC system FeS cluster assembly, IscX YPC_3087 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria YPC_3087 IPR018298 Adrenodoxin, iron-sulphur binding site YPC_3087 IPR001055 Adrenodoxin YPC_3087 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPC_3087 IPR036010 2Fe-2S ferredoxin-like superfamily YPC_3087 IPR012675 Beta-grasp domain superfamily YPC_3088 IPR013126 Heat shock protein 70 family YPC_3088 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily YPC_3088 IPR042039 HscA chaperone, nucleotide-binding domain YPC_3088 IPR018181 Heat shock protein 70, conserved site YPC_3088 IPR010236 ISC system FeS cluster assembly, HscA chaperone YPC_3088 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily YPC_3089 IPR004640 Co-chaperone Hsc20 YPC_3089 IPR036386 HscB, C-terminal domain superfamily YPC_3089 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain YPC_3089 IPR036869 Chaperone J-domain superfamily YPC_3089 IPR001623 DnaJ domain YPC_3090 IPR017870 FeS cluster insertion, C-terminal, conserved site YPC_3090 IPR035903 HesB-like domain superfamily YPC_3090 IPR011302 Iron-binding protein IscA, proteobacteria YPC_3090 IPR000361 FeS cluster biogenesis YPC_3090 IPR016092 FeS cluster insertion protein YPC_3091 IPR011339 ISC system FeS cluster assembly, IscU scaffold YPC_3091 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal YPC_3092 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_3092 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_3092 IPR015424 Pyridoxal phosphate-dependent transferase YPC_3092 IPR016454 Cysteine desulfurase YPC_3092 IPR010240 Cysteine desulfurase IscS YPC_3092 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPC_3092 IPR000192 Aminotransferase class V domain YPC_3093 IPR030489 Transcription regulator Rrf2-type, conserved site YPC_3093 IPR000944 Transcription regulator Rrf2-type YPC_3093 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3093 IPR036390 Winged helix DNA-binding domain superfamily YPC_3093 IPR010242 Transcription factor HTH, IscR YPC_3094 IPR029028 Alpha/beta knot methyltransferases YPC_3094 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPC_3094 IPR004384 RNA methyltransferase TrmJ/LasT YPC_3094 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPC_3095 IPR022337 Inositol monophosphatase, SuhB YPC_3095 IPR033942 Inositol monophosphatase YPC_3095 IPR020583 Inositol monophosphatase, metal-binding site YPC_3095 IPR000760 Inositol monophosphatase-like YPC_3095 IPR020550 Inositol monophosphatase, conserved site YPC_3097 IPR036515 Transposase IS200-like superfamily YPC_3097 IPR002686 Transposase IS200-like YPC_3098 IPR011541 Nickel/cobalt transporter, high-affinity YPC_3099 IPR016537 Uncharacterised conserved protein UCP008159, YPC_3099 IPR010412 Protein of unknown function DUF1007 YPC_3100 IPR011608 PRD domain YPC_3100 IPR036634 PRD domain superfamily YPC_3101 IPR036259 MFS transporter superfamily YPC_3101 IPR024989 Major facilitator superfamily associated domain YPC_3101 IPR026032 Probable 3-phenylpropionic acid transporter YPC_3103 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPC_3103 IPR000758 Virulence-related outer membrane protein YPC_3103 IPR027385 Outer membrane protein beta-barrel domain YPC_3105 IPR001085 Serine hydroxymethyltransferase YPC_3105 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_3105 IPR015424 Pyridoxal phosphate-dependent transferase YPC_3105 IPR039429 Serine hydroxymethyltransferase-like domain YPC_3105 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site YPC_3105 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_3106 IPR017927 FAD-binding domain, ferredoxin reductase-type YPC_3106 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPC_3106 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPC_3106 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPC_3106 IPR017938 Riboflavin synthase-like beta-barrel YPC_3106 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPC_3106 IPR023950 Flavohemoprotein YPC_3106 IPR000971 Globin YPC_3106 IPR009050 Globin-like superfamily YPC_3106 IPR012292 Globin/Protoglobin YPC_3107 IPR032791 Uncharacterised protein YhfZ, C-terminal domain YPC_3107 IPR041444 YhfZ, helix-turn-helix domain YPC_3108 IPR002187 Nitrogen regulatory protein PII YPC_3108 IPR002332 Nitrogen regulatory protein P-II, urydylation site YPC_3108 IPR017918 Nitrogen regulatory protein PII, conserved site YPC_3108 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPC_3108 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPC_3109 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_3109 IPR000132 Nitrilase/cyanide hydratase, conserved site YPC_3109 IPR036526 Carbon-nitrogen hydrolase superfamily YPC_3109 IPR014445 Glutamine-dependent NAD(+) synthetase YPC_3109 IPR022310 NAD/GMP synthase YPC_3109 IPR003694 NAD(+) synthetase YPC_3109 IPR003010 Carbon-nitrogen hydrolase YPC_3110 IPR025944 Sigma-54 interaction domain, conserved site YPC_3110 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPC_3110 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPC_3110 IPR002078 RNA polymerase sigma factor 54 interaction domain YPC_3110 IPR001789 Signal transduction response regulator, receiver domain YPC_3110 IPR003593 AAA+ ATPase domain YPC_3110 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3110 IPR009057 Homeobox-like domain superfamily YPC_3110 IPR011006 CheY-like superfamily YPC_3111 IPR025262 Quorum-sensing regulator protein G YPC_3112 IPR003594 Histidine kinase/HSP90-like ATPase YPC_3112 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_3112 IPR005467 Histidine kinase domain YPC_3112 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_3112 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_3112 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_3119 IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal YPC_3119 IPR017926 Glutamine amidotransferase YPC_3119 IPR010073 Phosphoribosylformylglycinamidine synthase PurL YPC_3119 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain YPC_3119 IPR010918 PurM-like, C-terminal domain YPC_3119 IPR036676 PurM-like, C-terminal domain superfamily YPC_3119 IPR036921 PurM-like, N-terminal domain superfamily YPC_3119 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily YPC_3119 IPR029062 Class I glutamine amidotransferase-like YPC_3120 IPR023346 Lysozyme-like domain superfamily YPC_3120 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPC_3120 IPR000189 Prokaryotic transglycosylase, active site YPC_3120 IPR008258 Transglycosylase SLT domain 1 YPC_3120 IPR023703 Membrane-bound lytic murein transglycosylase F YPC_3121 IPR016192 APOBEC/CMP deaminase, zinc-binding YPC_3121 IPR016193 Cytidine deaminase-like YPC_3121 IPR002125 Cytidine and deoxycytidylate deaminase domain YPC_3121 IPR028883 tRNA-specific adenosine deaminase YPC_3122 IPR023214 HAD superfamily YPC_3122 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB YPC_3122 IPR036412 HAD-like superfamily YPC_3123 IPR005486 Glucokinase regulatory protein, conserved site YPC_3123 IPR040190 N-acetylmuramic acid 6-phosphate etherase/glucokinase regulatory protein YPC_3123 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ YPC_3123 IPR009060 UBA-like superfamily YPC_3123 IPR001347 Sugar isomerase (SIS) YPC_3124 IPR001347 Sugar isomerase (SIS) YPC_3124 IPR009057 Homeobox-like domain superfamily YPC_3124 IPR035472 RpiR-like, SIS domain YPC_3124 IPR000281 Helix-turn-helix protein RpiR YPC_3124 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3125 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_3125 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPC_3126 IPR002686 Transposase IS200-like YPC_3126 IPR036515 Transposase IS200-like superfamily YPC_3128 IPR037143 4'-phosphopantetheinyl transferase domain superfamily YPC_3128 IPR008278 4'-phosphopantetheinyl transferase domain YPC_3128 IPR004568 Phosphopantetheine-protein transferase domain YPC_3128 IPR002582 Holo-[acyl carrier protein] synthase YPC_3129 IPR013785 Aldolase-type TIM barrel YPC_3129 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ YPC_3129 IPR036130 Pyridoxine 5'-phosphate synthase YPC_3130 IPR012340 Nucleic acid-binding, OB-fold YPC_3130 IPR022572 DNA replication/recombination mediator RecO, N-terminal YPC_3130 IPR003717 Recombination protein O, RecO YPC_3130 IPR037278 ARFGAP/RecO-like zinc finger YPC_3131 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3131 IPR009019 K homology domain superfamily, prokaryotic type YPC_3131 IPR004044 K Homology domain, type 2 YPC_3131 IPR005225 Small GTP-binding protein domain YPC_3131 IPR006073 GTP binding domain YPC_3131 IPR030388 Era-type guanine nucleotide-binding (G) domain YPC_3131 IPR005662 GTP-binding protein Era YPC_3131 IPR015946 K homology domain-like, alpha/beta YPC_3132 IPR036389 Ribonuclease III, endonuclease domain superfamily YPC_3132 IPR000999 Ribonuclease III domain YPC_3132 IPR011907 Ribonuclease III YPC_3132 IPR014720 Double-stranded RNA-binding domain YPC_3133 IPR019758 Peptidase S26A, signal peptidase I, conserved site YPC_3133 IPR000223 Peptidase S26A, signal peptidase I YPC_3133 IPR036286 LexA/Signal peptidase-like superfamily YPC_3133 IPR019757 Peptidase S26A, signal peptidase I, lysine active site YPC_3133 IPR019533 Peptidase S26 YPC_3133 IPR019756 Peptidase S26A, signal peptidase I, serine active site YPC_3134 IPR035647 EF-G domain III/V-like YPC_3134 IPR000640 Elongation factor EFG, domain V-like YPC_3134 IPR004161 Translation elongation factor EFTu-like, domain 2 YPC_3134 IPR031157 Tr-type G domain, conserved site YPC_3134 IPR038363 LepA, C-terminal domain superfamily YPC_3134 IPR006297 Elongation factor 4 YPC_3134 IPR013842 GTP-binding protein LepA, C-terminal YPC_3134 IPR000795 Transcription factor, GTP-binding domain YPC_3134 IPR035654 Elongation factor 4, domain IV YPC_3134 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3134 IPR005225 Small GTP-binding protein domain YPC_3136 IPR007359 Positive regulator of sigma(E), RseC/MucC YPC_3136 IPR026268 Protein RseC YPC_3139 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 YPC_3139 IPR007627 RNA polymerase sigma-70 region 2 YPC_3139 IPR013324 RNA polymerase sigma factor, region 3/4-like YPC_3139 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site YPC_3139 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3139 IPR013325 RNA polymerase sigma factor, region 2 YPC_3139 IPR039425 RNA polymerase sigma-70 like YPC_3139 IPR014284 RNA polymerase sigma-70 like domain YPC_3139 IPR014286 RNA polymerase sigma-70 RpoE type YPC_3140 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_3140 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YPC_3140 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily YPC_3140 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily YPC_3140 IPR005288 L-aspartate oxidase YPC_3140 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPC_3141 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase YPC_3141 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPC_3141 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_3141 IPR007848 Methyltransferase small domain YPC_3142 IPR001650 Helicase, C-terminal YPC_3142 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_3142 IPR011545 DEAD/DEAH box helicase domain YPC_3142 IPR028621 ATP-dependent RNA helicase SrmB YPC_3142 IPR014014 RNA helicase, DEAD-box type, Q motif YPC_3142 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPC_3142 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3144 IPR020683 Ankyrin repeat-containing domain YPC_3144 IPR036770 Ankyrin repeat-containing domain superfamily YPC_3144 IPR002110 Ankyrin repeat YPC_3146 IPR029058 Alpha/Beta hydrolase fold YPC_3148 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPC_3148 IPR011140 Autonomous glycyl radical cofactor GrcA YPC_3148 IPR001150 Glycine radical domain YPC_3151 IPR000816 Peptidase C15, pyroglutamyl peptidase I YPC_3151 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily YPC_3151 IPR029762 Pyroglutamyl peptidase I, bacterial-type YPC_3151 IPR033694 Pyroglutamyl peptidase I, Cys active site YPC_3151 IPR033693 Pyroglutamyl peptidase I, Glu active site YPC_3151 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like YPC_3156 IPR003778 Carboxyltransferase domain, subdomain A and B YPC_3156 IPR029000 Cyclophilin-like domain superfamily YPC_3157 IPR003833 Carboxyltransferase domain, subdomain C and D YPC_3157 IPR010016 KipI family YPC_3157 IPR029000 Cyclophilin-like domain superfamily YPC_3158 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 YPC_3158 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily YPC_3159 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPC_3159 IPR024225 Cyclic-AMP phosphodiesterase class-II, conserved site YPC_3159 IPR000396 Cyclic-AMP phosphodiesterase, class-II YPC_3160 IPR006050 DNA photolyase, N-terminal YPC_3160 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain YPC_3160 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily YPC_3160 IPR002081 Cryptochrome/DNA photolyase class 1 YPC_3160 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal YPC_3160 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily YPC_3160 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_3161 IPR013560 Domain of unknown function DUF1722 YPC_3163 IPR019663 Uncharacterised protein YbfA YPC_3164 IPR004623 Potassium-transporting ATPase A chain YPC_3165 IPR036412 HAD-like superfamily YPC_3165 IPR023299 P-type ATPase, cytoplasmic domain N YPC_3165 IPR006391 P-type ATPase, B chain, subfamily IA YPC_3165 IPR018303 P-type ATPase, phosphorylation site YPC_3165 IPR023298 P-type ATPase, transmembrane domain superfamily YPC_3165 IPR001757 P-type ATPase YPC_3165 IPR008250 P-type ATPase, A domain superfamily YPC_3166 IPR003820 Potassium-transporting ATPase C chain YPC_3167 IPR025201 Sensor protein KdpD, transmembrane domain YPC_3167 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_3167 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_3167 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal YPC_3167 IPR003018 GAF domain YPC_3167 IPR029016 GAF-like domain superfamily YPC_3167 IPR003594 Histidine kinase/HSP90-like ATPase YPC_3167 IPR038318 KdpD, transmembrane domain superfamily YPC_3167 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_3167 IPR005467 Histidine kinase domain YPC_3167 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_3168 IPR039420 Transcriptional regulatory protein WalR-like YPC_3168 IPR001789 Signal transduction response regulator, receiver domain YPC_3168 IPR001867 OmpR/PhoB-type DNA-binding domain YPC_3168 IPR011006 CheY-like superfamily YPC_3168 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3172 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPC_3172 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPC_3172 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPC_3172 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPC_3172 IPR005852 Phosphoglucomutase, alpha-D-glucose specific YPC_3172 IPR016066 Alpha-D-phosphohexomutase, conserved site YPC_3172 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YPC_3172 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPC_3173 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal YPC_3173 IPR005621 Negative modulator of initiation of replication SeqA YPC_3173 IPR010985 Ribbon-helix-helix YPC_3173 IPR013321 Arc-type ribbon-helix-helix YPC_3173 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain YPC_3173 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily YPC_3176 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria YPC_3176 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPC_3176 IPR006879 Carbohydrate deacetylase YdjC-like YPC_3177 IPR011051 RmlC-like cupin domain superfamily YPC_3177 IPR020449 Transcription regulator HTH, AraC- type YPC_3177 IPR018062 HTH domain AraC-type, conserved site YPC_3177 IPR014710 RmlC-like jelly roll fold YPC_3177 IPR018060 DNA binding HTH domain, AraC-type YPC_3177 IPR009057 Homeobox-like domain superfamily YPC_3177 IPR013096 Cupin 2, conserved barrel YPC_3178 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit YPC_3178 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily YPC_3179 IPR004501 Phosphotransferase system, EIIC component, type 3 YPC_3179 IPR004796 Phosphotransferase system, cellobiose-type IIC component YPC_3179 IPR003352 Phosphotransferase system, EIIC YPC_3180 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPC_3180 IPR013012 Phosphotransferase system, EIIB component, type 3 YPC_3180 IPR036095 PTS system IIB component-like superfamily YPC_3182 IPR003691 Putative fluoride ion transporter CrcB YPC_3183 IPR003691 Putative fluoride ion transporter CrcB YPC_3184 IPR013099 Potassium channel domain YPC_3184 IPR036291 NAD(P)-binding domain superfamily YPC_3184 IPR003148 Regulator of K+ conductance, N-terminal YPC_3185 IPR038303 HNS-dependent expression A/B superfamily YPC_3185 IPR028623 HNS-dependent expression B YPC_3185 IPR010486 HNS-dependent expression A/B YPC_3186 IPR004688 Transition metal uptake transporter nickel/cobalt YPC_3186 IPR011541 Nickel/cobalt transporter, high-affinity YPC_3187 IPR029020 Ammonium/urea transporter YPC_3187 IPR004937 Urea transporter YPC_3190 IPR003495 CobW/HypB/UreG, nucleotide-binding domain YPC_3190 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3190 IPR004400 Urease accessory protein UreG YPC_3191 IPR002639 Urease accessory protein UreF YPC_3191 IPR038277 UreF domain superfamily YPC_3192 IPR007864 Urease accessory protein UreE, C-terminal domain YPC_3192 IPR036118 UreE urease accessory, N-terminal domain superfamily YPC_3192 IPR012406 Urease accessory protein UreE YPC_3192 IPR004029 UreE urease accessory, N-terminal YPC_3193 IPR029754 Urease nickel binding site YPC_3193 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPC_3193 IPR017951 Urease alpha subunit, C-terminal YPC_3193 IPR006680 Amidohydrolase-related YPC_3193 IPR011612 Urease alpha-subunit, N-terminal domain YPC_3193 IPR017950 Urease active site YPC_3193 IPR005848 Urease, alpha subunit YPC_3193 IPR032466 Metal-dependent hydrolase YPC_3194 IPR002019 Urease, beta subunit YPC_3194 IPR036461 Urease, beta subunit superfamily YPC_3195 IPR012010 Urease, gamma subunit YPC_3195 IPR036463 Urease, gamma subunit superfamily YPC_3195 IPR002026 Urease, gamma/gamma-beta subunit YPC_3199 IPR035906 MetI-like superfamily YPC_3199 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPC_3199 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_3200 IPR035906 MetI-like superfamily YPC_3200 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_3201 IPR000914 Solute-binding protein family 5 domain YPC_3201 IPR011980 Nickel ABC transporter, substrate-binding protein NikA YPC_3201 IPR030678 Peptide/nickel binding protein, MppA-type YPC_3201 IPR039424 Solute-binding protein family 5 YPC_3201 IPR023765 Solute-binding protein family 5, conserved site YPC_3203 IPR012340 Nucleic acid-binding, OB-fold YPC_3203 IPR002059 Cold-shock protein, DNA-binding YPC_3203 IPR011129 Cold shock domain YPC_3203 IPR019844 Cold-shock (CSD) domain YPC_3203 IPR012156 Cold shock, CspA YPC_3205 IPR009587 Protein of unknown function DUF1198 YPC_3206 IPR018994 Protein of unknown function DUF2002 YPC_3207 IPR009435 Acid shock YPC_3207 IPR023497 Acid shock protein YPC_3209 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial YPC_3209 IPR029039 Flavoprotein-like superfamily YPC_3209 IPR004465 Ribonucleotide reductase Class Ib, NrdI YPC_3210 IPR013346 Ribonucleotide reductase, class I , alpha subunit YPC_3210 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE YPC_3210 IPR013509 Ribonucleotide reductase large subunit, N-terminal YPC_3210 IPR000788 Ribonucleotide reductase large subunit, C-terminal YPC_3210 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YPC_3210 IPR013554 Ribonucleotide reductase N-terminal YPC_3210 IPR039718 Ribonucleoside-diphosphate reductase large subunit YPC_3211 IPR000358 Ribonucleotide reductase small subunit family YPC_3211 IPR009078 Ferritin-like superfamily YPC_3211 IPR033909 Ribonucleotide reductase small subunit YPC_3211 IPR030475 Ribonucleotide reductase small subunit, acitve site YPC_3211 IPR026494 Ribonucleoside reductase subunit beta, NrdF YPC_3211 IPR012348 Ribonucleotide reductase-like YPC_3213 IPR003593 AAA+ ATPase domain YPC_3213 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3213 IPR003439 ABC transporter-like YPC_3213 IPR017871 ABC transporter, conserved site YPC_3213 IPR000644 CBS domain YPC_3213 IPR005892 Glycine betaine transport ATP-binding subunit YPC_3214 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_3214 IPR035906 MetI-like superfamily YPC_3215 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPC_3218 IPR017894 HTH domain, IS21 transposase-type YPC_3218 IPR012337 Ribonuclease H-like superfamily YPC_3218 IPR036397 Ribonuclease H superfamily YPC_3218 IPR001584 Integrase, catalytic core YPC_3218 IPR006120 Resolvase, HTH domain YPC_3219 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3219 IPR002611 IstB-like ATP-binding protein YPC_3219 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_3219 IPR003593 AAA+ ATPase domain YPC_3219 IPR001270 ClpA/B family YPC_3220 IPR010998 Integrase/recombinase, N-terminal YPC_3220 IPR025166 Integrase, DNA-binding domain YPC_3220 IPR038488 Integrase, DNA-binding domain superfamily YPC_3220 IPR002104 Integrase, catalytic domain YPC_3220 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPC_3220 IPR013762 Integrase-like, catalytic domain superfamily YPC_3221 IPR002514 Transposase IS3/IS911family YPC_3221 IPR009057 Homeobox-like domain superfamily YPC_3222 IPR010998 Integrase/recombinase, N-terminal YPC_3222 IPR025166 Integrase, DNA-binding domain YPC_3222 IPR038488 Integrase, DNA-binding domain superfamily YPC_3222 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPC_3222 IPR002104 Integrase, catalytic domain YPC_3222 IPR013762 Integrase-like, catalytic domain superfamily YPC_3225 IPR000073 Alpha/beta hydrolase fold-1 YPC_3225 IPR029058 Alpha/Beta hydrolase fold YPC_3227 IPR002145 Ribbon-helix-helix protein, CopG YPC_3227 IPR010985 Ribbon-helix-helix YPC_3229 IPR010086 Flavodoxin, long chain YPC_3229 IPR001226 Flavodoxin, conserved site YPC_3229 IPR008254 Flavodoxin/nitric oxide synthase YPC_3229 IPR029039 Flavoprotein-like superfamily YPC_3230 IPR002481 Ferric-uptake regulator YPC_3230 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3230 IPR036390 Winged helix DNA-binding domain superfamily YPC_3234 IPR023614 Porin domain superfamily YPC_3234 IPR005318 Outer membrane porin, bacterial YPC_3235 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPC_3235 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily YPC_3235 IPR004514 Glutamine-tRNA synthetase YPC_3235 IPR022861 Glutamine-tRNA ligase, bacterial YPC_3235 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPC_3235 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal YPC_3235 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily YPC_3235 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_3235 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain YPC_3235 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPC_3236 IPR002686 Transposase IS200-like YPC_3236 IPR036515 Transposase IS200-like superfamily YPC_3238 IPR011055 Duplicated hybrid motif YPC_3238 IPR001996 Phosphotransferase system, IIB component, type 1 YPC_3238 IPR013013 Phosphotransferase system, EIIC component, type 1 YPC_3238 IPR036878 Glucose permease domain IIB YPC_3238 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPC_3238 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 YPC_3238 IPR003352 Phosphotransferase system, EIIC YPC_3238 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component YPC_3239 IPR004547 Glucosamine-6-phosphate isomerase YPC_3239 IPR018321 Glucosamine-6-phosphate isomerase, conserved site YPC_3239 IPR037171 NagB/RpiA transferase-like YPC_3239 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase YPC_3240 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPC_3240 IPR003764 N-acetylglucosamine-6-phosphate deacetylase YPC_3240 IPR006680 Amidohydrolase-related YPC_3240 IPR032466 Metal-dependent hydrolase YPC_3241 IPR000835 MarR-type HTH domain YPC_3241 IPR000600 ROK family YPC_3241 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3241 IPR036390 Winged helix DNA-binding domain superfamily YPC_3242 IPR023214 HAD superfamily YPC_3242 IPR006357 HAD-superfamily hydrolase, subfamily IIA YPC_3242 IPR036412 HAD-like superfamily YPC_3244 IPR001962 Asparagine synthase YPC_3244 IPR033738 Asparagine synthase, N-terminal domain YPC_3244 IPR017932 Glutamine amidotransferase type 2 domain YPC_3244 IPR029055 Nucleophile aminohydrolases, N-terminal YPC_3244 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_3244 IPR006426 Asparagine synthase, glutamine-hydrolyzing YPC_3252 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YPC_3252 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_3252 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 YPC_3252 IPR002938 FAD-binding domain YPC_3253 IPR005839 Methylthiotransferase YPC_3253 IPR020612 Methylthiotransferase, conserved site YPC_3253 IPR013848 Methylthiotransferase, N-terminal YPC_3253 IPR006638 Elp3/MiaB/NifB YPC_3253 IPR038135 Methylthiotransferase, N-terminal domain superfamily YPC_3253 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB YPC_3253 IPR007197 Radical SAM YPC_3253 IPR023404 Radical SAM, alpha/beta horseshoe YPC_3253 IPR002792 TRAM domain YPC_3254 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3254 IPR003714 PhoH-like protein YPC_3255 IPR023091 Metalloprotease catalytic domain superfamily, predicted YPC_3255 IPR002036 Endoribonuclease YbeY YPC_3255 IPR020549 Endoribonuclease YbeY, conserved site YPC_3257 IPR000644 CBS domain YPC_3257 IPR036318 FAD-binding, type PCMH-like superfamily YPC_3257 IPR016169 FAD-binding, type PCMH, subdomain 2 YPC_3257 IPR005170 Transporter-associated domain YPC_3258 IPR004563 Apolipoprotein N-acyltransferase YPC_3258 IPR003010 Carbon-nitrogen hydrolase YPC_3258 IPR036526 Carbon-nitrogen hydrolase superfamily YPC_3259 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPC_3260 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPC_3260 IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ YPC_3260 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_3260 IPR035906 MetI-like superfamily YPC_3261 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPC_3261 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM YPC_3261 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_3261 IPR035906 MetI-like superfamily YPC_3262 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3262 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPC_3262 IPR003439 ABC transporter-like YPC_3262 IPR003593 AAA+ ATPase domain YPC_3262 IPR017871 ABC transporter, conserved site YPC_3263 IPR009912 Zinc-ribbon containing domain YPC_3265 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPC_3265 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPC_3265 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPC_3265 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_3265 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPC_3265 IPR025709 Leucyl-tRNA synthetase, editing domain YPC_3265 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPC_3265 IPR002302 Leucine-tRNA ligase YPC_3266 IPR007485 LPS-assembly lipoprotein LptE YPC_3267 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3267 IPR032780 DNA polymerase III subunit delta, C-terminal YPC_3267 IPR010372 DNA polymerase III delta, N-terminal YPC_3267 IPR005790 DNA polymerase III, delta subunit YPC_3267 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPC_3268 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_3268 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase YPC_3268 IPR004821 Cytidyltransferase-like domain YPC_3269 IPR004394 Protein Iojap/ribosomal silencing factor RsfS YPC_3270 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPC_3270 IPR003742 RNA methyltransferase RlmH YPC_3270 IPR029028 Alpha/beta knot methyltransferases YPC_3271 IPR036138 Penicillin-binding protein, dimerisation domain superfamily YPC_3271 IPR001460 Penicillin-binding protein, transpeptidase YPC_3271 IPR012338 Beta-lactamase/transpeptidase-like YPC_3271 IPR017790 Penicillin-binding protein 2 YPC_3271 IPR005311 Penicillin-binding protein, dimerisation domain YPC_3272 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site YPC_3272 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA YPC_3272 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB YPC_3273 IPR036680 Sporulation-like domain superfamily YPC_3273 IPR007730 Sporulation-like domain YPC_3273 IPR034718 Endolytic peptidoglycan transglycosylase RlpA YPC_3273 IPR012997 Rare lipoprotein A YPC_3273 IPR036908 RlpA-like domain superfamily YPC_3273 IPR009009 RlpA-like protein, double-psi beta-barrel domain YPC_3274 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily YPC_3274 IPR012338 Beta-lactamase/transpeptidase-like YPC_3274 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YPC_3274 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPC_3274 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPC_3274 IPR015956 Penicillin-binding protein, C-terminal domain superfamily YPC_3275 IPR027471 YbeD-like domain superfamily YPC_3275 IPR007454 Uncharacterised protein family UPF0250 YPC_3276 IPR020605 Octanoyltransferase, conserved site YPC_3276 IPR000544 Octanoyltransferase YPC_3276 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain YPC_3277 IPR007197 Radical SAM YPC_3277 IPR003698 Lipoyl synthase YPC_3277 IPR013785 Aldolase-type TIM barrel YPC_3277 IPR006638 Elp3/MiaB/NifB YPC_3277 IPR031691 Lipoyl synthase, N-terminal YPC_3278 IPR024905 Sec-independent protein translocase protein TatE YPC_3278 IPR003369 Sec-independent protein translocase protein TatA/B/E YPC_3278 IPR006312 Sec-independent protein translocase protein TatA/E YPC_3280 IPR003691 Putative fluoride ion transporter CrcB YPC_3283 IPR012156 Cold shock, CspA YPC_3283 IPR011129 Cold shock domain YPC_3283 IPR002059 Cold-shock protein, DNA-binding YPC_3283 IPR019844 Cold-shock (CSD) domain YPC_3283 IPR012340 Nucleic acid-binding, OB-fold YPC_3284 IPR016032 Signal transduction response regulator, C-terminal effector YPC_3284 IPR000792 Transcription regulator LuxR, C-terminal YPC_3289 IPR003439 ABC transporter-like YPC_3289 IPR017871 ABC transporter, conserved site YPC_3289 IPR011527 ABC transporter type 1, transmembrane domain YPC_3289 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPC_3289 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3289 IPR003593 AAA+ ATPase domain YPC_3289 IPR039421 Type I protein exporter YPC_3290 IPR011051 RmlC-like cupin domain superfamily YPC_3290 IPR023770 5-deoxy-glucuronate isomerase, Bacilli YPC_3290 IPR021120 KduI/IolB isomerase YPC_3290 IPR014710 RmlC-like jelly roll fold YPC_3290 IPR024203 5-deoxy-glucuronate isomerase, IolB YPC_3291 IPR030823 IolE/MocC family YPC_3291 IPR013022 Xylose isomerase-like, TIM barrel domain YPC_3291 IPR036237 Xylose isomerase-like superfamily YPC_3292 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily YPC_3292 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPC_3292 IPR022841 5-dehydro-2-deoxygluconokinase, Firmicutes YPC_3292 IPR011611 Carbohydrate kinase PfkB YPC_3292 IPR029056 Ribokinase-like YPC_3292 IPR030830 5-Dehydro-2-deoxygluconokinase YPC_3293 IPR000683 Oxidoreductase, N-terminal YPC_3293 IPR036291 NAD(P)-binding domain superfamily YPC_3293 IPR030827 Inositol 2-dehydrogenase YPC_3293 IPR004104 Oxidoreductase, C-terminal YPC_3294 IPR001851 ABC transporter, permease YPC_3295 IPR003439 ABC transporter-like YPC_3295 IPR015861 ABC transporter, ribose import, RbsA YPC_3295 IPR017871 ABC transporter, conserved site YPC_3295 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3295 IPR003593 AAA+ ATPase domain YPC_3296 IPR025997 Periplasmic binding protein YPC_3296 IPR028082 Periplasmic binding protein-like I YPC_3299 IPR029061 Thiamin diphosphate-binding fold YPC_3299 IPR000399 TPP-binding enzyme, conserved site YPC_3299 IPR012000 Thiamine pyrophosphate enzyme, central domain YPC_3299 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPC_3299 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPC_3299 IPR023757 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, Firmicutes YPC_3299 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPC_3299 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase YPC_3300 IPR010061 Methylmalonate-semialdehyde dehydrogenase YPC_3300 IPR016162 Aldehyde dehydrogenase, N-terminal YPC_3300 IPR016160 Aldehyde dehydrogenase, cysteine active site YPC_3300 IPR016163 Aldehyde dehydrogenase, C-terminal YPC_3300 IPR016161 Aldehyde/histidinol dehydrogenase YPC_3300 IPR015590 Aldehyde dehydrogenase domain YPC_3304 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid YPC_3304 IPR002890 Macroglobulin domain YPC_3304 IPR011625 Alpha-2-macroglobulin, bait region domain YPC_3304 IPR021868 Alpha-2-macroglobulin MG3 domain YPC_3304 IPR041203 Bacterial Alpha-2-macroglobulin, MG5 domain YPC_3304 IPR041462 Bacterial Alpha-2-macroglobulin, MG6 domain YPC_3304 IPR041246 Bacterial alpha-2-macroglobulin MG10 domain YPC_3304 IPR001599 Alpha-2-macroglobulin YPC_3305 IPR036515 Transposase IS200-like superfamily YPC_3305 IPR002686 Transposase IS200-like YPC_3307 IPR011815 Penicillin-binding protein 1C YPC_3307 IPR001264 Glycosyl transferase, family 51 YPC_3307 IPR012338 Beta-lactamase/transpeptidase-like YPC_3307 IPR023346 Lysozyme-like domain superfamily YPC_3307 IPR009647 Penicillin-binding, C-terminal YPC_3307 IPR036950 Penicillin binding protein transglycosylase domain YPC_3307 IPR001460 Penicillin-binding protein, transpeptidase YPC_3309 IPR038722 Ner, winged helix-turn-helix DNA-binding domain YPC_3309 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_3314 IPR036624 Hcp1-like superfamily YPC_3314 IPR008514 Type VI secretion system effector, Hcp YPC_3317 IPR036709 Autotransporter beta-domain superfamily YPC_3317 IPR030930 Adhesin of bacterial autotransporter system YPC_3317 IPR006315 Outer membrane autotransporter barrel YPC_3317 IPR005546 Autotransporter beta-domain YPC_3317 IPR024973 ESPR domain YPC_3317 IPR003991 Pertactin virulence factor family YPC_3317 IPR004899 Pertactin, central region YPC_3317 IPR011050 Pectin lyase fold/virulence factor YPC_3317 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPC_3320 IPR003347 JmjC domain YPC_3320 IPR039994 JmjC domain-containing YPC_3321 IPR001207 Transposase, mutator type YPC_3328 IPR020471 Aldo/keto reductase YPC_3328 IPR018170 Aldo/keto reductase, conserved site YPC_3328 IPR036812 NADP-dependent oxidoreductase domain superfamily YPC_3328 IPR023210 NADP-dependent oxidoreductase domain YPC_3329 IPR020471 Aldo/keto reductase YPC_3329 IPR023210 NADP-dependent oxidoreductase domain YPC_3329 IPR036812 NADP-dependent oxidoreductase domain superfamily YPC_3330 IPR036390 Winged helix DNA-binding domain superfamily YPC_3330 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3330 IPR000847 Transcription regulator HTH, LysR YPC_3330 IPR005119 LysR, substrate-binding YPC_3331 IPR017894 HTH domain, IS21 transposase-type YPC_3331 IPR006120 Resolvase, HTH domain YPC_3331 IPR001584 Integrase, catalytic core YPC_3331 IPR012337 Ribonuclease H-like superfamily YPC_3331 IPR036397 Ribonuclease H superfamily YPC_3332 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3332 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_3332 IPR002611 IstB-like ATP-binding protein YPC_3332 IPR001270 ClpA/B family YPC_3332 IPR003593 AAA+ ATPase domain YPC_3335 IPR020422 Dual specificity protein phosphatase domain YPC_3335 IPR029021 Protein-tyrosine phosphatase-like YPC_3335 IPR016130 Protein-tyrosine phosphatase, active site YPC_3335 IPR003595 Protein-tyrosine phosphatase, catalytic YPC_3335 IPR000387 Tyrosine specific protein phosphatases domain YPC_3335 IPR000340 Dual specificity phosphatase, catalytic domain YPC_3336 IPR029058 Alpha/Beta hydrolase fold YPC_3336 IPR022742 Serine aminopeptidase, S33 YPC_3336 IPR022744 Methyltransferase domain, putative YPC_3336 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_3337 IPR016676 Phospholipid/glycerol acyltransferase, predicted YPC_3337 IPR002123 Phospholipid/glycerol acyltransferase YPC_3338 IPR000374 Phosphatidate cytidylyltransferase YPC_3339 IPR000462 CDP-alcohol phosphatidyltransferase YPC_3348 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPC_3348 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site YPC_3348 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPC_3348 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase YPC_3348 IPR036291 NAD(P)-binding domain superfamily YPC_3349 IPR036986 RNA-binding S4 domain superfamily YPC_3349 IPR002942 RNA-binding S4 domain YPC_3350 IPR036515 Transposase IS200-like superfamily YPC_3350 IPR002686 Transposase IS200-like YPC_3352 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase YPC_3352 IPR032678 tRNA synthetases class I, catalytic domain YPC_3352 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPC_3352 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR YPC_3352 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_3352 IPR015803 Cysteine-tRNA ligase YPC_3353 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase YPC_3353 IPR029000 Cyclophilin-like domain superfamily YPC_3353 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site YPC_3353 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain YPC_3354 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPC_3354 IPR010138 UDP-2,3-diacylglucosamine hydrolase YPC_3354 IPR029052 Metallo-dependent phosphatase-like YPC_3355 IPR024694 PurE, prokaryotic type YPC_3355 IPR035893 PurE domain superfamily YPC_3355 IPR000031 PurE domain YPC_3355 IPR033747 Class I PurE YPC_3356 IPR011054 Rudiment single hybrid motif YPC_3356 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain YPC_3356 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YPC_3356 IPR013815 ATP-grasp fold, subdomain 1 YPC_3356 IPR016185 Pre-ATP-grasp domain superfamily YPC_3356 IPR011761 ATP-grasp fold YPC_3356 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit YPC_3357 IPR038766 Membrane component of ABC transporter, predicted YPC_3358 IPR017871 ABC transporter, conserved site YPC_3358 IPR003593 AAA+ ATPase domain YPC_3358 IPR003439 ABC transporter-like YPC_3358 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3359 IPR036514 SGNH hydrolase superfamily YPC_3359 IPR013830 SGNH hydrolase-type esterase domain YPC_3359 IPR008265 Lipase, GDSL, active site YPC_3360 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPC_3360 IPR036291 NAD(P)-binding domain superfamily YPC_3360 IPR002347 Short-chain dehydrogenase/reductase SDR YPC_3361 IPR011990 Tetratricopeptide-like helical domain superfamily YPC_3361 IPR036249 Thioredoxin-like superfamily YPC_3361 IPR013766 Thioredoxin domain YPC_3363 IPR001107 Band 7 domain YPC_3363 IPR036013 Band 7/SPFH domain superfamily YPC_3363 IPR018080 Band 7/stomatin-like, conserved site YPC_3363 IPR032435 Band 7, C-terminal extension YPC_3363 IPR001972 Stomatin family YPC_3364 IPR002810 NfeD-like, C-terminal domain YPC_3365 IPR000551 MerR-type HTH domain YPC_3365 IPR011789 Cu(I)-responsive transcriptional regulator YPC_3365 IPR009061 Putative DNA-binding domain superfamily YPC_3366 IPR027256 P-type ATPase, subfamily IB YPC_3366 IPR036163 Heavy metal-associated domain superfamily YPC_3366 IPR001757 P-type ATPase YPC_3366 IPR018303 P-type ATPase, phosphorylation site YPC_3366 IPR023299 P-type ATPase, cytoplasmic domain N YPC_3366 IPR023214 HAD superfamily YPC_3366 IPR023298 P-type ATPase, transmembrane domain superfamily YPC_3366 IPR017969 Heavy-metal-associated, conserved site YPC_3366 IPR036412 HAD-like superfamily YPC_3366 IPR008250 P-type ATPase, A domain superfamily YPC_3366 IPR006121 Heavy metal-associated domain, HMA YPC_3369 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC YPC_3369 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily YPC_3369 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain YPC_3375 IPR011701 Major facilitator superfamily YPC_3375 IPR036259 MFS transporter superfamily YPC_3375 IPR020846 Major facilitator superfamily domain YPC_3376 IPR038770 Sodium/solute symporter superfamily YPC_3376 IPR036291 NAD(P)-binding domain superfamily YPC_3376 IPR006153 Cation/H+ exchanger YPC_3376 IPR004771 K+/H+ exchanger YPC_3376 IPR003148 Regulator of K+ conductance, N-terminal YPC_3377 IPR029056 Ribokinase-like YPC_3377 IPR011611 Carbohydrate kinase PfkB YPC_3377 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPC_3378 IPR003856 Polysaccharide chain length determinant N-terminal domain YPC_3379 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPC_3379 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPC_3379 IPR016066 Alpha-D-phosphohexomutase, conserved site YPC_3379 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPC_3379 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPC_3379 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPC_3379 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YPC_3379 IPR005841 Alpha-D-phosphohexomutase superfamily YPC_3380 IPR001173 Glycosyltransferase 2-like YPC_3380 IPR029044 Nucleotide-diphospho-sugar transferases YPC_3381 IPR011051 RmlC-like cupin domain superfamily YPC_3381 IPR005835 Nucleotidyl transferase domain YPC_3381 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YPC_3381 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal YPC_3381 IPR029044 Nucleotide-diphospho-sugar transferases YPC_3381 IPR014710 RmlC-like jelly roll fold YPC_3382 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase YPC_3382 IPR036291 NAD(P)-binding domain superfamily YPC_3382 IPR001509 NAD-dependent epimerase/dehydratase YPC_3385 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain YPC_3385 IPR001296 Glycosyl transferase, family 1 YPC_3391 IPR036291 NAD(P)-binding domain superfamily YPC_3391 IPR001509 NAD-dependent epimerase/dehydratase YPC_3392 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_3392 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_3392 IPR015424 Pyridoxal phosphate-dependent transferase YPC_3392 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPC_3393 IPR013445 CDP-glucose 4,6-dehydratase YPC_3393 IPR016040 NAD(P)-binding domain YPC_3393 IPR036291 NAD(P)-binding domain superfamily YPC_3394 IPR005835 Nucleotidyl transferase domain YPC_3394 IPR029044 Nucleotide-diphospho-sugar transferases YPC_3394 IPR013446 Glucose-1-phosphate cytidylyltransferase YPC_3395 IPR012675 Beta-grasp domain superfamily YPC_3395 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPC_3395 IPR036010 2Fe-2S ferredoxin-like superfamily YPC_3395 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPC_3395 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPC_3395 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPC_3395 IPR017938 Riboflavin synthase-like beta-barrel YPC_3395 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPC_3395 IPR017927 FAD-binding domain, ferredoxin reductase-type YPC_3396 IPR017927 FAD-binding domain, ferredoxin reductase-type YPC_3396 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPC_3396 IPR012675 Beta-grasp domain superfamily YPC_3396 IPR036010 2Fe-2S ferredoxin-like superfamily YPC_3396 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPC_3396 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPC_3396 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPC_3396 IPR017938 Riboflavin synthase-like beta-barrel YPC_3396 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPC_3397 IPR033659 Ferrochelatase, N-terminal YPC_3397 IPR033644 Ferrochelatase, C-terminal YPC_3397 IPR019772 Ferrochelatase, active site YPC_3397 IPR001015 Ferrochelatase YPC_3398 IPR000850 Adenylate kinase/UMP-CMP kinase YPC_3398 IPR033690 Adenylate kinase, conserved site YPC_3398 IPR007862 Adenylate kinase, active site lid domain YPC_3398 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3398 IPR006259 Adenylate kinase subfamily YPC_3399 IPR019805 Heat shock protein Hsp90, conserved site YPC_3399 IPR037196 HSP90, C-terminal domain YPC_3399 IPR001404 Heat shock protein Hsp90 family YPC_3399 IPR020575 Heat shock protein Hsp90, N-terminal YPC_3399 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_3399 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_3399 IPR003594 Histidine kinase/HSP90-like ATPase YPC_3401 IPR006171 TOPRIM domain YPC_3401 IPR015967 Recombination protein RecR, conserved site YPC_3401 IPR000093 DNA recombination protein RecR YPC_3401 IPR023627 Recombination protein RecR YPC_3401 IPR034137 RecR, TOPRIM domain YPC_3401 IPR023628 Recombination protein RecR, C4-type zinc finger YPC_3402 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily YPC_3402 IPR004401 Nucleoid-associated protein YbaB/EbfC family YPC_3403 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily YPC_3403 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3403 IPR021029 DNA polymerase III, tau subunit, domain V YPC_3403 IPR012763 DNA polymerase III, subunit gamma/ tau YPC_3403 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV YPC_3403 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPC_3403 IPR001270 ClpA/B family YPC_3403 IPR003593 AAA+ ATPase domain YPC_3403 IPR022754 DNA polymerase III, gamma subunit, domain III YPC_3407 IPR007401 Protein of unknown function DUF454 YPC_3409 IPR019630 Protein of unknown function DUF2496, YbaM-related YPC_3410 IPR006686 Mechanosensitive ion channel MscS, conserved site YPC_3410 IPR024393 Mechanosensitive ion channel MscS, porin domain YPC_3410 IPR023298 P-type ATPase, transmembrane domain superfamily YPC_3410 IPR010920 LSM domain superfamily YPC_3410 IPR006685 Mechanosensitive ion channel MscS YPC_3410 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPC_3410 IPR023408 Mechanosensitive ion channel MscS domain superfamily YPC_3410 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPC_3410 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YPC_3411 IPR003787 Sulphur relay, DsrE/F-like protein YPC_3411 IPR027396 DsrEFH-like YPC_3412 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPC_3412 IPR001647 DNA-binding HTH domain, TetR-type YPC_3412 IPR009057 Homeobox-like domain superfamily YPC_3412 IPR013572 Transcription regulator MAATS, C-terminal YPC_3412 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPC_3413 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPC_3413 IPR006143 RND efflux pump, membrane fusion protein YPC_3414 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPC_3414 IPR001036 Acriflavin resistance protein YPC_3414 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPC_3415 IPR027493 Ribosomal protein L31 type B YPC_3415 IPR042105 Ribosomal protein L31 superfamily YPC_3415 IPR034704 L28p-like YPC_3415 IPR002150 Ribosomal protein L31 YPC_3416 IPR035977 Ribosomal protein L36 superfamily YPC_3416 IPR000473 Ribosomal protein L36 YPC_3418 IPR019693 Biofilm formation regulator YbaJ YPC_3419 IPR007985 Haemolysin expression modulating, HHA YPC_3419 IPR036666 HHA superfamily YPC_3421 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain YPC_3421 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3421 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPC_3422 IPR039366 YscW/ExsB YPC_3424 IPR029069 HotDog domain superfamily YPC_3424 IPR003703 Acyl-CoA thioesterase YPC_3425 IPR001905 Ammonium transporter YPC_3425 IPR024041 Ammonium transporter AmtB-like domain YPC_3425 IPR018047 Ammonium transporter, conserved site YPC_3425 IPR029020 Ammonium/urea transporter YPC_3426 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPC_3426 IPR002187 Nitrogen regulatory protein PII YPC_3426 IPR002332 Nitrogen regulatory protein P-II, urydylation site YPC_3426 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPC_3426 IPR017918 Nitrogen regulatory protein PII, conserved site YPC_3427 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3427 IPR039421 Type I protein exporter YPC_3427 IPR003439 ABC transporter-like YPC_3427 IPR017871 ABC transporter, conserved site YPC_3427 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPC_3427 IPR011527 ABC transporter type 1, transmembrane domain YPC_3427 IPR003593 AAA+ ATPase domain YPC_3428 IPR017871 ABC transporter, conserved site YPC_3428 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3428 IPR003593 AAA+ ATPase domain YPC_3428 IPR011527 ABC transporter type 1, transmembrane domain YPC_3428 IPR039421 Type I protein exporter YPC_3428 IPR003439 ABC transporter-like YPC_3428 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPC_3429 IPR000485 AsnC-type HTH domain YPC_3429 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPC_3429 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPC_3429 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3429 IPR036390 Winged helix DNA-binding domain superfamily YPC_3429 IPR019888 Transcription regulator AsnC-type YPC_3429 IPR011008 Dimeric alpha-beta barrel YPC_3429 IPR011991 ArsR-like helix-turn-helix domain YPC_3430 IPR005856 Cysteine synthase YPC_3430 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPC_3430 IPR001926 Pyridoxal-phosphate dependent enzyme YPC_3430 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPC_3430 IPR005859 Cysteine synthase CysK YPC_3431 IPR023938 HMP-PP phosphatase YPC_3431 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPC_3431 IPR023214 HAD superfamily YPC_3431 IPR036412 HAD-like superfamily YPC_3431 IPR000150 Cof family YPC_3432 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YPC_3432 IPR000914 Solute-binding protein family 5 domain YPC_3432 IPR039424 Solute-binding protein family 5 YPC_3433 IPR018317 Queuosine biosynthesis protein QueC YPC_3433 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_3434 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family YPC_3434 IPR029069 HotDog domain superfamily YPC_3436 IPR010994 RuvA domain 2-like YPC_3436 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPC_3436 IPR004509 Competence protein ComEA, helix-hairpin-helix domain YPC_3437 IPR027304 Trigger factor/SurA domain superfamily YPC_3437 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site YPC_3437 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YPC_3438 IPR000119 Histone-like DNA-binding protein YPC_3438 IPR020816 Histone-like DNA-binding protein, conserved site YPC_3438 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily YPC_3439 IPR003959 ATPase, AAA-type, core YPC_3439 IPR003593 AAA+ ATPase domain YPC_3439 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_3439 IPR015947 PUA-like superfamily YPC_3439 IPR008268 Peptidase S16, active site YPC_3439 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3439 IPR003111 Lon, substrate-binding domain YPC_3439 IPR027065 Lon protease YPC_3439 IPR008269 Peptidase S16, Lon proteolytic domain YPC_3439 IPR004815 Lon protease, bacterial/eukaryotic-type YPC_3439 IPR027543 Lon protease, bacterial YPC_3439 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPC_3440 IPR003959 ATPase, AAA-type, core YPC_3440 IPR019489 Clp ATPase, C-terminal YPC_3440 IPR004487 Clp protease, ATP-binding subunit ClpX YPC_3440 IPR010603 Zinc finger, ClpX C4-type YPC_3440 IPR038366 Zinc finger, ClpX C4-type superfamily YPC_3440 IPR003593 AAA+ ATPase domain YPC_3440 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3441 IPR029045 ClpP/crotonase-like domain superfamily YPC_3441 IPR018215 ClpP, Ser active site YPC_3441 IPR001907 ATP-dependent Clp protease proteolytic subunit YPC_3441 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA YPC_3441 IPR033135 ClpP, histidine active site YPC_3442 IPR027304 Trigger factor/SurA domain superfamily YPC_3442 IPR036611 Trigger factor ribosome-binding domain superfamily YPC_3442 IPR037041 Trigger factor, C-terminal domain superfamily YPC_3442 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPC_3442 IPR005215 Trigger factor YPC_3442 IPR008880 Trigger factor, C-terminal YPC_3442 IPR008881 Trigger factor, ribosome-binding, bacterial YPC_3444 IPR036065 BolA-like superfamily YPC_3444 IPR002634 BolA protein YPC_3445 IPR012640 Membrane lipoprotein, lipid attachment site YPC_3445 IPR005619 Uncharacterised protein family, YajG YPC_3446 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 YPC_3446 IPR011701 Major facilitator superfamily YPC_3446 IPR020846 Major facilitator superfamily domain YPC_3446 IPR036259 MFS transporter superfamily YPC_3448 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily YPC_3448 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like YPC_3449 IPR002429 Cytochrome c oxidase subunit II-like C-terminal YPC_3449 IPR010514 COX aromatic rich motif YPC_3449 IPR008972 Cupredoxin YPC_3449 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain YPC_3449 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily YPC_3449 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain YPC_3449 IPR006333 Cytochrome o ubiquinol oxidase subunit II YPC_3450 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site YPC_3450 IPR000883 Cytochrome c oxidase subunit I YPC_3450 IPR036927 Cytochrome c oxidase-like, subunit I superfamily YPC_3450 IPR023616 Cytochrome c oxidase-like, subunit I domain YPC_3450 IPR014207 Cytochrome o ubiquinol oxidase, subunit I YPC_3451 IPR014206 Cytochrome o ubiquinol oxidase, subunit III YPC_3451 IPR024791 Cytochrome c oxidase subunit III YPC_3451 IPR033946 Ubiquinol oxidase subunit III domain YPC_3451 IPR000298 Cytochrome c oxidase subunit III-like YPC_3451 IPR035973 Cytochrome c oxidase subunit III-like superfamily YPC_3451 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle YPC_3452 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes YPC_3452 IPR014210 Cytochrome o ubiquinol oxidase subunit IV YPC_3453 IPR006369 Protohaem IX farnesyltransferase YPC_3453 IPR000537 UbiA prenyltransferase family YPC_3453 IPR030470 UbiA prenyltransferase conserved site YPC_3454 IPR011701 Major facilitator superfamily YPC_3454 IPR036259 MFS transporter superfamily YPC_3454 IPR020846 Major facilitator superfamily domain YPC_3455 IPR036183 YajQ-like superfamily YPC_3455 IPR035570 UPF0234, N-terminal YPC_3455 IPR035571 UPF0234-like, C-terminal YPC_3455 IPR007551 Protein of unknown function DUF520 YPC_3456 IPR013332 Ketopantoate reductase, N-terminal domain YPC_3456 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPC_3456 IPR013752 Ketopantoate reductase, C-terminal domain YPC_3456 IPR003710 Ketopantoate reductase ApbA/PanE YPC_3456 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPC_3456 IPR036291 NAD(P)-binding domain superfamily YPC_3457 IPR006287 Protein/nucleic acid deglycase DJ-1 YPC_3457 IPR029062 Class I glutamine amidotransferase-like YPC_3457 IPR002818 DJ-1/PfpI YPC_3458 IPR001763 Rhodanese-like domain YPC_3458 IPR036873 Rhodanese-like domain superfamily YPC_3458 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_3458 IPR020536 Thil, AANH domain YPC_3458 IPR003720 tRNA sulfurtransferase ThiI YPC_3458 IPR026340 Thiazole biosynthesis domain YPC_3458 IPR004114 THUMP domain YPC_3460 IPR003761 Exonuclease VII, small subunit YPC_3460 IPR037004 Exonuclease VII, small subunit superfamily YPC_3461 IPR033749 Polyprenyl synthetase, conserved site YPC_3461 IPR000092 Polyprenyl synthetase YPC_3461 IPR008949 Isoprenoid synthase domain superfamily YPC_3462 IPR005474 Transketolase, N-terminal YPC_3462 IPR020826 Transketolase binding site YPC_3462 IPR005475 Transketolase-like, pyrimidine-binding domain YPC_3462 IPR033248 Transketolase, C-terminal domain YPC_3462 IPR029061 Thiamin diphosphate-binding fold YPC_3462 IPR005477 Deoxyxylulose-5-phosphate synthase YPC_3462 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPC_3465 IPR007686 YutG/PgpA domain YPC_3465 IPR026037 Phosphatidylglycerophosphatase A YPC_3465 IPR036681 PgpA-like superfamily YPC_3466 IPR006283 Thiamine-monophosphate kinase YPC_3466 IPR036921 PurM-like, N-terminal domain superfamily YPC_3466 IPR016188 PurM-like, N-terminal domain YPC_3466 IPR036676 PurM-like, C-terminal domain superfamily YPC_3466 IPR010918 PurM-like, C-terminal domain YPC_3467 IPR006027 NusB/RsmB/TIM44 YPC_3467 IPR011605 NusB antitermination factor YPC_3467 IPR035926 NusB-like superfamily YPC_3468 IPR036467 Lumazine/riboflavin synthase superfamily YPC_3468 IPR002180 Lumazine/riboflavin synthase YPC_3468 IPR034964 Lumazine synthase YPC_3469 IPR016192 APOBEC/CMP deaminase, zinc-binding YPC_3469 IPR011549 Riboflavin-specific deaminase, C-terminal YPC_3469 IPR002125 Cytidine and deoxycytidylate deaminase domain YPC_3469 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal YPC_3469 IPR016193 Cytidine deaminase-like YPC_3469 IPR004794 Riboflavin biosynthesis protein RibD YPC_3469 IPR024072 Dihydrofolate reductase-like domain superfamily YPC_3470 IPR005144 ATP-cone domain YPC_3470 IPR003796 Ribonucleotide reductase regulator NrdR-like YPC_3475 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPC_3475 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YPC_3475 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YPC_3475 IPR005665 Protein-export membrane protein SecF, bacterial YPC_3476 IPR027398 SecD export protein N-terminal TM domain YPC_3476 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YPC_3476 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YPC_3476 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPC_3476 IPR005791 Protein translocase subunit SecD YPC_3477 IPR003849 Preprotein translocase YajC YPC_3478 IPR004803 tRNA-guanine transglycosylase YPC_3478 IPR036511 Queuine tRNA-ribosyltransferase-like YPC_3478 IPR002616 tRNA-guanine(15) transglycosylase-like YPC_3479 IPR042119 QueA, domain 2 YPC_3479 IPR042118 QueA, domain 1 YPC_3479 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA YPC_3479 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily YPC_3480 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria YPC_3480 IPR007431 Acyl carrier protein phosphodiesterase YPC_3481 IPR019479 Peroxiredoxin, C-terminal YPC_3481 IPR024706 Peroxiredoxin, AhpC-type YPC_3481 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YPC_3481 IPR013766 Thioredoxin domain YPC_3481 IPR036249 Thioredoxin-like superfamily YPC_3485 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPC_3485 IPR002347 Short-chain dehydrogenase/reductase SDR YPC_3485 IPR036291 NAD(P)-binding domain superfamily YPC_3485 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YPC_3486 IPR017069 Maltodextrin glucosidase YPC_3486 IPR014756 Immunoglobulin E-set YPC_3486 IPR017853 Glycoside hydrolase superfamily YPC_3486 IPR013780 Glycosyl hydrolase, all-beta YPC_3486 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain YPC_3486 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPC_3487 IPR004840 Amino acid permease, conserved site YPC_3487 IPR004841 Amino acid permease/ SLC12A domain YPC_3488 IPR004685 Branched-chain amino acid transport system II carrier protein YPC_3489 IPR011862 Phosphate binding protein YPC_3489 IPR024370 PBP domain YPC_3490 IPR000014 PAS domain YPC_3490 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_3490 IPR035965 PAS domain superfamily YPC_3490 IPR013767 PAS fold YPC_3490 IPR021766 Phosphate regulon sensor protein PhoR YPC_3490 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR YPC_3490 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_3490 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_3490 IPR003594 Histidine kinase/HSP90-like ATPase YPC_3490 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_3490 IPR005467 Histidine kinase domain YPC_3491 IPR001867 OmpR/PhoB-type DNA-binding domain YPC_3491 IPR011006 CheY-like superfamily YPC_3491 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3491 IPR039420 Transcriptional regulatory protein WalR-like YPC_3491 IPR001789 Signal transduction response regulator, receiver domain YPC_3491 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB YPC_3493 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain YPC_3493 IPR004593 Nuclease SbcCD subunit D YPC_3493 IPR026843 Nuclease SbcCD subunit D, C-terminal domain YPC_3493 IPR029052 Metallo-dependent phosphatase-like YPC_3493 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPC_3494 IPR038729 Rad50/SbcC-type AAA domain YPC_3494 IPR004592 Nuclease SbcC, gammaproteobacteria type YPC_3494 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3495 IPR000600 ROK family YPC_3496 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_3496 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3496 IPR001270 ClpA/B family YPC_3496 IPR003593 AAA+ ATPase domain YPC_3496 IPR002611 IstB-like ATP-binding protein YPC_3497 IPR017894 HTH domain, IS21 transposase-type YPC_3497 IPR001584 Integrase, catalytic core YPC_3497 IPR036397 Ribonuclease H superfamily YPC_3497 IPR006120 Resolvase, HTH domain YPC_3497 IPR012337 Ribonuclease H-like superfamily YPC_3498 IPR007476 Putative exonuclease, RdgC YPC_3499 IPR014710 RmlC-like jelly roll fold YPC_3499 IPR011051 RmlC-like cupin domain superfamily YPC_3499 IPR009664 Pyrimidine/purine nucleoside phosphorylase YPC_3500 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3500 IPR031322 Shikimate kinase/gluconokinase YPC_3500 IPR000623 Shikimate kinase/Threonine synthase-like 1 YPC_3500 IPR027544 Shikimate kinase 2 YPC_3500 IPR023000 Shikimate kinase, conserved site YPC_3503 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_3503 IPR013216 Methyltransferase type 11 YPC_3506 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal YPC_3506 IPR009875 PilZ domain YPC_3506 IPR012349 FMN-binding split barrel YPC_3506 IPR023787 Type III secretion system flagellar brake protein YcgR YPC_3507 IPR036515 Transposase IS200-like superfamily YPC_3507 IPR002686 Transposase IS200-like YPC_3511 IPR016162 Aldehyde dehydrogenase, N-terminal YPC_3511 IPR015590 Aldehyde dehydrogenase domain YPC_3511 IPR016161 Aldehyde/histidinol dehydrogenase YPC_3511 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site YPC_3511 IPR000965 GPR domain YPC_3511 IPR016163 Aldehyde dehydrogenase, C-terminal YPC_3511 IPR012134 Glutamate-5-semialdehyde dehydrogenase YPC_3512 IPR036974 PUA domain superfamily YPC_3512 IPR041739 Glutamate-5-kinase domain YPC_3512 IPR001048 Aspartate/glutamate/uridylate kinase YPC_3512 IPR001057 Glutamate/acetylglutamate kinase YPC_3512 IPR036393 Acetylglutamate kinase-like superfamily YPC_3512 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase YPC_3512 IPR019797 Glutamate 5-kinase, conserved site YPC_3512 IPR002478 PUA domain YPC_3512 IPR011529 Glutamate 5-kinase YPC_3512 IPR015947 PUA-like superfamily YPC_3513 IPR009986 Sigma factor-binding transcriptional regulator Crl YPC_3513 IPR038208 Sigma factor-binding protein Crl superfamily YPC_3515 IPR023747 Xanthine-guanine phosphoribosyltransferase YPC_3515 IPR029057 Phosphoribosyltransferase-like YPC_3515 IPR000836 Phosphoribosyltransferase domain YPC_3520 IPR002686 Transposase IS200-like YPC_3520 IPR036515 Transposase IS200-like superfamily YPC_3521 IPR000847 Transcription regulator HTH, LysR YPC_3521 IPR036390 Winged helix DNA-binding domain superfamily YPC_3521 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3521 IPR005119 LysR, substrate-binding YPC_3522 IPR002933 Peptidase M20 YPC_3522 IPR011650 Peptidase M20, dimerisation domain YPC_3522 IPR001160 Peptidase M20C, Xaa-His dipeptidase YPC_3524 IPR001126 UmuC domain YPC_3524 IPR024728 DNA polymerase type-Y, HhH motif YPC_3524 IPR036775 DNA polymerase, Y-family, little finger domain superfamily YPC_3524 IPR017961 DNA polymerase, Y-family, little finger domain YPC_3524 IPR022880 DNA polymerase IV YPC_3525 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPC_3525 IPR030395 Glycerophosphodiester phosphodiesterase domain YPC_3527 IPR024932 Flavin transferase ApbE YPC_3527 IPR003374 ApbE-like superfamily YPC_3527 IPR042159 Flavin-trafficking protein ApbE YPC_3528 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPC_3528 IPR012675 Beta-grasp domain superfamily YPC_3528 IPR017938 Riboflavin synthase-like beta-barrel YPC_3528 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPC_3528 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F YPC_3528 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPC_3528 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPC_3528 IPR017927 FAD-binding domain, ferredoxin reductase-type YPC_3528 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPC_3528 IPR036010 2Fe-2S ferredoxin-like superfamily YPC_3529 IPR003667 NqrDE/RnfAE YPC_3529 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E YPC_3530 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D YPC_3530 IPR003667 NqrDE/RnfAE YPC_3531 IPR007329 FMN-binding YPC_3531 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C YPC_3532 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD YPC_3532 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B YPC_3533 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain YPC_3533 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A YPC_3535 IPR038063 L,D-transpeptidase catalytic domain-like YPC_3535 IPR005490 L,D-transpeptidase catalytic domain YPC_3536 IPR017932 Glutamine amidotransferase type 2 domain YPC_3536 IPR029055 Nucleophile aminohydrolases, N-terminal YPC_3536 IPR026869 Putative glutamine amidotransferase type 2 YPC_3537 IPR035461 GmhA/DiaA YPC_3537 IPR004515 Phosphoheptose isomerase YPC_3537 IPR001347 Sugar isomerase (SIS) YPC_3538 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily YPC_3538 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type YPC_3538 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal YPC_3538 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal YPC_3538 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal YPC_3538 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily YPC_3540 IPR041109 HMW1C N-terminal YPC_3540 IPR040542 HMW1 domain 2 YPC_3542 IPR008638 Filamentous haemagglutinin, N-terminal YPC_3542 IPR012334 Pectin lyase fold YPC_3542 IPR011050 Pectin lyase fold/virulence factor YPC_3548 IPR010158 Amidase, carbamoylase-type YPC_3548 IPR036264 Bacterial exopeptidase dimerisation domain YPC_3548 IPR002933 Peptidase M20 YPC_3548 IPR011650 Peptidase M20, dimerisation domain YPC_3549 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPC_3549 IPR000192 Aminotransferase class V domain YPC_3549 IPR015424 Pyridoxal phosphate-dependent transferase YPC_3549 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase YPC_3549 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_3549 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_3550 IPR003439 ABC transporter-like YPC_3550 IPR017871 ABC transporter, conserved site YPC_3550 IPR003593 AAA+ ATPase domain YPC_3550 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3550 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPC_3552 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPC_3552 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_3552 IPR035906 MetI-like superfamily YPC_3553 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPC_3553 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPC_3553 IPR018313 Solute-binding protein family 3, conserved site YPC_3553 IPR001320 Ionotropic glutamate receptor YPC_3558 IPR036928 Amidase signature (AS) superfamily YPC_3558 IPR014087 1-carboxybiuret hydrolase, AtzE subunit YPC_3558 IPR000120 Amidase YPC_3558 IPR023631 Amidase signature domain YPC_3560 IPR011701 Major facilitator superfamily YPC_3560 IPR020846 Major facilitator superfamily domain YPC_3560 IPR036259 MFS transporter superfamily YPC_3561 IPR011606 Branched-chain amino acid transport, permease YPC_3562 IPR008407 Branched-chain amino acid transport, AzlD YPC_3563 IPR023187 Transcriptional regulator MarR-type, conserved site YPC_3563 IPR000835 MarR-type HTH domain YPC_3563 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3563 IPR036390 Winged helix DNA-binding domain superfamily YPC_3564 IPR005694 Efflux pump membrane protein YPC_3564 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPC_3565 IPR004638 Drug resistance transporter EmrB-like YPC_3565 IPR011701 Major facilitator superfamily YPC_3565 IPR020846 Major facilitator superfamily domain YPC_3565 IPR036259 MFS transporter superfamily YPC_3566 IPR029064 50S ribosomal protein L30e-like YPC_3566 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPC_3566 IPR013123 RNA 2-O ribose methyltransferase, substrate binding YPC_3566 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPC_3566 IPR004441 RNA methyltransferase TrmH family YPC_3566 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted YPC_3566 IPR029028 Alpha/beta knot methyltransferases YPC_3567 IPR005746 Thioredoxin YPC_3567 IPR017937 Thioredoxin, conserved site YPC_3567 IPR036249 Thioredoxin-like superfamily YPC_3567 IPR013766 Thioredoxin domain YPC_3570 IPR016181 Acyl-CoA N-acyltransferase YPC_3570 IPR011761 ATP-grasp fold YPC_3570 IPR013815 ATP-grasp fold, subdomain 1 YPC_3570 IPR000182 GNAT domain YPC_3570 IPR036291 NAD(P)-binding domain superfamily YPC_3570 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain YPC_3570 IPR016102 Succinyl-CoA synthetase-like YPC_3570 IPR003781 CoA-binding YPC_3571 IPR016270 CDP-alcohol phosphatidyltransferase class-II family YPC_3571 IPR025202 Phospholipase D-like domain YPC_3571 IPR001736 Phospholipase D/Transphosphatidylase YPC_3572 IPR018736 Protein of unknown function DUF2279, periplasmic lipoprotein YPC_3572 IPR017028 Uncharacterised conserved protein UCP034456 YPC_3579 IPR018368 ClpA/B, conserved site 1 YPC_3579 IPR003959 ATPase, AAA-type, core YPC_3579 IPR017730 Chaperonin ClpB YPC_3579 IPR019489 Clp ATPase, C-terminal YPC_3579 IPR003593 AAA+ ATPase domain YPC_3579 IPR036628 Clp, N-terminal domain superfamily YPC_3579 IPR004176 Clp, N-terminal YPC_3579 IPR001270 ClpA/B family YPC_3579 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3579 IPR041546 ClpA/ClpB, AAA lid domain YPC_3579 IPR028299 ClpA/B, conserved site 2 YPC_3581 IPR036986 RNA-binding S4 domain superfamily YPC_3581 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPC_3581 IPR006225 Pseudouridine synthase, RluC/RluD YPC_3581 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPC_3581 IPR006145 Pseudouridine synthase, RsuA/RluA YPC_3581 IPR002942 RNA-binding S4 domain YPC_3582 IPR039565 Outer membrane lipoprotein BamD-like YPC_3582 IPR017689 Outer membrane protein assembly factor BamD YPC_3582 IPR011990 Tetratricopeptide-like helical domain superfamily YPC_3583 IPR003489 Ribosome hibernation promoting factor/RaiA YPC_3583 IPR036567 Ribosome hibernation promotion factor-like YPC_3584 IPR002686 Transposase IS200-like YPC_3584 IPR036515 Transposase IS200-like superfamily YPC_3586 IPR018528 Prephenate dehydratase, conserved site YPC_3586 IPR002912 ACT domain YPC_3586 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase YPC_3586 IPR001086 Prephenate dehydratase YPC_3586 IPR010952 Chorismate mutase, gammaproteobacteria YPC_3586 IPR002701 Chorismate mutase II, prokaryotic-type YPC_3586 IPR036979 Chorismate mutase domain superfamily YPC_3586 IPR036263 Chorismate mutase type II superfamily YPC_3587 IPR036397 Ribonuclease H superfamily YPC_3587 IPR006120 Resolvase, HTH domain YPC_3587 IPR017894 HTH domain, IS21 transposase-type YPC_3587 IPR012337 Ribonuclease H-like superfamily YPC_3587 IPR001584 Integrase, catalytic core YPC_3588 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3588 IPR001270 ClpA/B family YPC_3588 IPR003593 AAA+ ATPase domain YPC_3588 IPR002611 IstB-like ATP-binding protein YPC_3588 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_3589 IPR036263 Chorismate mutase type II superfamily YPC_3589 IPR018528 Prephenate dehydratase, conserved site YPC_3589 IPR001086 Prephenate dehydratase YPC_3589 IPR010952 Chorismate mutase, gammaproteobacteria YPC_3589 IPR002701 Chorismate mutase II, prokaryotic-type YPC_3589 IPR036979 Chorismate mutase domain superfamily YPC_3589 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase YPC_3589 IPR002912 ACT domain YPC_3590 IPR036263 Chorismate mutase type II superfamily YPC_3590 IPR036979 Chorismate mutase domain superfamily YPC_3590 IPR036291 NAD(P)-binding domain superfamily YPC_3590 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPC_3590 IPR002701 Chorismate mutase II, prokaryotic-type YPC_3590 IPR011277 Chorismate mutase, T-protein YPC_3590 IPR003099 Prephenate dehydrogenase YPC_3590 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein YPC_3591 IPR013785 Aldolase-type TIM barrel YPC_3591 IPR006218 DAHP synthetase I/KDSA YPC_3591 IPR006219 DHAP synthase, class 1 YPC_3592 IPR001789 Signal transduction response regulator, receiver domain YPC_3592 IPR011006 CheY-like superfamily YPC_3592 IPR007492 LytTR DNA-binding domain YPC_3593 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPC_3594 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPC_3595 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPC_3596 IPR007433 Protein of unknown function DUF481 YPC_3597 IPR036515 Transposase IS200-like superfamily YPC_3597 IPR002686 Transposase IS200-like YPC_3600 IPR008991 Translation protein SH3-like domain superfamily YPC_3600 IPR038657 Ribosomal protein L19 superfamily YPC_3600 IPR001857 Ribosomal protein L19 YPC_3600 IPR018257 Ribosomal protein L19, conserved site YPC_3601 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal YPC_3601 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPC_3601 IPR029028 Alpha/beta knot methyltransferases YPC_3601 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain YPC_3601 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria YPC_3602 IPR002676 RimM, N-terminal YPC_3602 IPR011033 PRC-barrel-like superfamily YPC_3602 IPR027275 PRC-barrel domain YPC_3602 IPR011961 16S rRNA processing protein RimM YPC_3602 IPR036976 RimM, N-terminal domain superfamily YPC_3602 IPR009000 Translation protein, beta-barrel domain superfamily YPC_3603 IPR023803 Ribosomal protein S16 domain superfamily YPC_3603 IPR020592 Ribosomal protein S16, conserved site YPC_3603 IPR000307 Ribosomal protein S16 YPC_3605 IPR013822 Signal recognition particle SRP54, helical bundle YPC_3605 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YPC_3605 IPR022941 Signal recognition particle, SRP54 subunit YPC_3605 IPR004780 Signal recognition particle protein YPC_3605 IPR004125 Signal recognition particle, SRP54 subunit, M-domain YPC_3605 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily YPC_3605 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3605 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily YPC_3605 IPR003593 AAA+ ATPase domain YPC_3606 IPR002541 Cytochrome c assembly protein YPC_3607 IPR005170 Transporter-associated domain YPC_3607 IPR036318 FAD-binding, type PCMH-like superfamily YPC_3607 IPR002550 CNNM, transmembrane domain YPC_3607 IPR000644 CBS domain YPC_3607 IPR016169 FAD-binding, type PCMH, subdomain 2 YPC_3610 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily YPC_3610 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPC_3610 IPR003815 S-ribosylhomocysteinase (LuxS) YPC_3612 IPR006334 Glutamate--cysteine ligase, monofunctional YPC_3612 IPR007370 Glutamate--cysteine ligase YPC_3612 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YPC_3613 IPR032816 SNARE associated Golgi protein YPC_3614 IPR010976 Beta-phosphoglucomutase hydrolase YPC_3614 IPR041492 Haloacid dehalogenase-like hydrolase YPC_3614 IPR006439 HAD hydrolase, subfamily IA YPC_3614 IPR036412 HAD-like superfamily YPC_3614 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPC_3614 IPR023214 HAD superfamily YPC_3619 IPR003751 Translational regulator CsrA YPC_3619 IPR036107 Carbon storage regulator superfamily YPC_3620 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily YPC_3620 IPR002318 Alanine-tRNA ligase, class IIc YPC_3620 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain YPC_3620 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily YPC_3620 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria YPC_3620 IPR012947 Threonyl/alanyl tRNA synthetase, SAD YPC_3620 IPR003156 DHHA1 domain YPC_3620 IPR009000 Translation protein, beta-barrel domain superfamily YPC_3620 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal YPC_3621 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3621 IPR003783 Regulatory protein RecX YPC_3622 IPR003593 AAA+ ATPase domain YPC_3622 IPR013765 DNA recombination and repair protein RecA YPC_3622 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain YPC_3622 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3622 IPR023400 DNA recombination and repair protein RecA, C-terminal YPC_3622 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface YPC_3622 IPR020584 DNA recombination/repair protein RecA, conserved site YPC_3623 IPR008136 CinA, C-terminal YPC_3623 IPR036653 CinA-like, C-terminal YPC_3624 IPR023745 MSF-type transporter, YcaD YPC_3624 IPR036259 MFS transporter superfamily YPC_3624 IPR020846 Major facilitator superfamily domain YPC_3624 IPR011701 Major facilitator superfamily YPC_3628 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPC_3628 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPC_3628 IPR042016 Apulose kinase YPC_3628 IPR000577 Carbohydrate kinase, FGGY YPC_3631 IPR001851 ABC transporter, permease YPC_3632 IPR017871 ABC transporter, conserved site YPC_3632 IPR003439 ABC transporter-like YPC_3632 IPR003593 AAA+ ATPase domain YPC_3632 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3632 IPR015861 ABC transporter, ribose import, RbsA YPC_3635 IPR019793 Peroxidases heam-ligand binding site YPC_3635 IPR002016 Haem peroxidase YPC_3635 IPR019794 Peroxidase, active site YPC_3635 IPR010255 Haem peroxidase superfamily YPC_3635 IPR000763 Catalase-peroxidase haem YPC_3636 IPR009155 Cytochrome b562 YPC_3636 IPR010980 Cytochrome c/b562 YPC_3637 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPC_3637 IPR016174 Di-haem cytochrome, transmembrane YPC_3639 IPR020945 DMSO/Nitrate reductase chaperone YPC_3639 IPR026269 Tat proofreading chaperone DmsD-type YPC_3639 IPR036411 TorD-like superfamily YPC_3639 IPR028611 Tat proofreading chaperone DmsD YPC_3640 IPR007059 DMSO reductase anchor subunit (DmsC) YPC_3641 IPR014297 Dimethylsulphoxide reductase, chain B YPC_3641 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPC_3641 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_3642 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPC_3642 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPC_3642 IPR006656 Molybdopterin oxidoreductase YPC_3642 IPR006657 Molybdopterin dinucleotide-binding domain YPC_3642 IPR009010 Aspartate decarboxylase-like domain superfamily YPC_3642 IPR006311 Twin-arginine translocation pathway, signal sequence YPC_3642 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPC_3642 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPC_3642 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE YPC_3643 IPR004661 L-ribulose-5-phosphate 4-epimerase YPC_3643 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPC_3643 IPR033748 L-ribulose-5-phosphate 4-epimerase AraD YPC_3643 IPR001303 Class II aldolase/adducin N-terminal YPC_3644 IPR037171 NagB/RpiA transferase-like YPC_3644 IPR001034 DeoR-type HTH domain YPC_3644 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPC_3644 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3644 IPR014036 DeoR C-terminal sensor domain YPC_3644 IPR036390 Winged helix DNA-binding domain superfamily YPC_3647 IPR036515 Transposase IS200-like superfamily YPC_3647 IPR002686 Transposase IS200-like YPC_3648 IPR003593 AAA+ ATPase domain YPC_3648 IPR017871 ABC transporter, conserved site YPC_3648 IPR015861 ABC transporter, ribose import, RbsA YPC_3648 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3648 IPR003439 ABC transporter-like YPC_3649 IPR001851 ABC transporter, permease YPC_3650 IPR001851 ABC transporter, permease YPC_3651 IPR036237 Xylose isomerase-like superfamily YPC_3651 IPR001719 AP endonuclease 2 YPC_3651 IPR004560 L-ribulose-5-phosphate 3-epimerase YPC_3651 IPR013022 Xylose isomerase-like, TIM barrel domain YPC_3652 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPC_3652 IPR018483 Carbohydrate kinase, FGGY, conserved site YPC_3652 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPC_3652 IPR000577 Carbohydrate kinase, FGGY YPC_3653 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain YPC_3653 IPR011167 Iron-dependent fumarate hydratase YPC_3653 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily YPC_3653 IPR020557 Fumarate lyase, conserved site YPC_3653 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain YPC_3655 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 YPC_3655 IPR001714 Peptidase M24, methionine aminopeptidase YPC_3655 IPR000994 Peptidase M24 YPC_3655 IPR036005 Creatinase/aminopeptidase-like YPC_3658 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPC_3658 IPR010917 TonB-dependent receptor, conserved site YPC_3658 IPR000531 TonB-dependent receptor-like, beta-barrel YPC_3658 IPR037066 TonB-dependent receptor, plug domain superfamily YPC_3658 IPR012910 TonB-dependent receptor, plug domain YPC_3658 IPR039426 Vitamin B12 transporter BtuB-like YPC_3658 IPR010916 TonB box, conserved site YPC_3660 IPR004852 Di-haem cytochrome c peroxidase YPC_3660 IPR036909 Cytochrome c-like domain superfamily YPC_3660 IPR009056 Cytochrome c-like domain YPC_3660 IPR025992 Haem-binding domain YPC_3661 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPC_3661 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPC_3661 IPR018313 Solute-binding protein family 3, conserved site YPC_3664 IPR018334 ArsR-type transcription regulator, HTH motif YPC_3664 IPR011991 ArsR-like helix-turn-helix domain YPC_3664 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3664 IPR001845 HTH ArsR-type DNA-binding domain YPC_3664 IPR036390 Winged helix DNA-binding domain superfamily YPC_3665 IPR000802 Arsenical pump membrane protein, ArsB YPC_3666 IPR007324 Sugar-binding domain, putative YPC_3666 IPR009057 Homeobox-like domain superfamily YPC_3666 IPR037171 NagB/RpiA transferase-like YPC_3666 IPR011991 ArsR-like helix-turn-helix domain YPC_3666 IPR025246 Transposase IS30-like HTH domain YPC_3667 IPR004007 DhaL domain YPC_3667 IPR036117 DhaL domain superfamily YPC_3667 IPR012737 Dihydroxyacetone kinase, subunit L YPC_3668 IPR004006 DhaK domain YPC_3669 IPR036291 NAD(P)-binding domain superfamily YPC_3669 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPC_3669 IPR002347 Short-chain dehydrogenase/reductase SDR YPC_3670 IPR011032 GroES-like superfamily YPC_3670 IPR013149 Alcohol dehydrogenase, C-terminal YPC_3670 IPR020843 Polyketide synthase, enoylreductase domain YPC_3670 IPR013154 Alcohol dehydrogenase, N-terminal YPC_3670 IPR036291 NAD(P)-binding domain superfamily YPC_3671 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family YPC_3671 IPR004785 Ribose 5-phosphate isomerase B YPC_3671 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily YPC_3673 IPR005748 DNA mismatch repair protein MutS YPC_3673 IPR036678 MutS, connector domain superfamily YPC_3673 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3673 IPR016151 DNA mismatch repair protein MutS, N-terminal YPC_3673 IPR007860 DNA mismatch repair protein MutS, connector domain YPC_3673 IPR007696 DNA mismatch repair protein MutS, core YPC_3673 IPR036187 DNA mismatch repair protein MutS, core domain superfamily YPC_3673 IPR007695 DNA mismatch repair protein MutS-like, N-terminal YPC_3673 IPR000432 DNA mismatch repair protein MutS, C-terminal YPC_3673 IPR017261 DNA mismatch repair protein MutS/MSH YPC_3673 IPR007861 DNA mismatch repair protein MutS, clamp YPC_3674 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3674 IPR007630 RNA polymerase sigma-70 region 4 YPC_3674 IPR007624 RNA polymerase sigma-70 region 3 YPC_3674 IPR013324 RNA polymerase sigma factor, region 3/4-like YPC_3674 IPR007627 RNA polymerase sigma-70 region 2 YPC_3674 IPR013325 RNA polymerase sigma factor, region 2 YPC_3674 IPR000943 RNA polymerase sigma-70 YPC_3674 IPR014284 RNA polymerase sigma-70 like domain YPC_3674 IPR009042 RNA polymerase sigma-70 region 1.2 YPC_3674 IPR012761 RNA polymerase sigma factor RpoS YPC_3675 IPR011055 Duplicated hybrid motif YPC_3675 IPR016047 Peptidase M23 YPC_3675 IPR036779 LysM domain superfamily YPC_3675 IPR018392 LysM domain YPC_3676 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase YPC_3676 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_3677 IPR002828 Survival protein SurE-like phosphatase/nucleotidase YPC_3677 IPR030048 Survival protein SurE YPC_3677 IPR036523 SurE-like phosphatase/nucleotidase superfamily YPC_3678 IPR001656 Pseudouridine synthase, TruD YPC_3678 IPR042214 Pseudouridine synthase, TruD, catalytic domain YPC_3678 IPR020119 Pseudouridine synthase TruD, conserved site YPC_3678 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPC_3678 IPR011760 Pseudouridine synthase, TruD, insertion domain YPC_3679 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily YPC_3679 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site YPC_3679 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YPC_3680 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPC_3680 IPR034683 Cytidylyltransferase IspD/TarI YPC_3680 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site YPC_3680 IPR029044 Nucleotide-diphospho-sugar transferases YPC_3681 IPR023081 Cell division protein FtsB YPC_3681 IPR007060 Septum formation initiator FtsL/DivIC YPC_3682 IPR022721 Protein of unknown function DUF3561 YPC_3683 IPR002891 Adenylyl-sulfate kinase YPC_3683 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3684 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3684 IPR009000 Translation protein, beta-barrel domain superfamily YPC_3684 IPR005225 Small GTP-binding protein domain YPC_3684 IPR011779 Sulphate adenylyltransferase, large subunit YPC_3684 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPC_3684 IPR031157 Tr-type G domain, conserved site YPC_3684 IPR041757 Sulfate adenylyltransferase subunit CysN, GTP-binding domain YPC_3684 IPR000795 Transcription factor, GTP-binding domain YPC_3685 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_3685 IPR011784 Sulphate adenylyltransferase, small subunit YPC_3685 IPR002500 Phosphoadenosine phosphosulphate reductase YPC_3686 IPR028281 Siroheme synthase, central domain YPC_3686 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site YPC_3686 IPR006367 Sirohaem synthase, N-terminal YPC_3686 IPR019478 Sirohaem synthase, dimerisation domain YPC_3686 IPR000878 Tetrapyrrole methylase YPC_3686 IPR035996 Tetrapyrrole methylase superfamily YPC_3686 IPR036291 NAD(P)-binding domain superfamily YPC_3686 IPR006366 Uroporphyrin-III C-methyltransferase YPC_3686 IPR014776 Tetrapyrrole methylase, subdomain 2 YPC_3686 IPR012409 Sirohaem synthase YPC_3686 IPR014777 Tetrapyrrole methylase, subdomain 1 YPC_3686 IPR037115 Sirohaem synthase, dimerisation domain superfamily YPC_3693 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit YPC_3693 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain YPC_3693 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site YPC_3693 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain YPC_3693 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily YPC_3694 IPR001094 Flavodoxin-like YPC_3694 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily YPC_3694 IPR008254 Flavodoxin/nitric oxide synthase YPC_3694 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPC_3694 IPR017927 FAD-binding domain, ferredoxin reductase-type YPC_3694 IPR029039 Flavoprotein-like superfamily YPC_3694 IPR017938 Riboflavin synthase-like beta-barrel YPC_3694 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPC_3694 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria YPC_3694 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPC_3694 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding YPC_3694 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain YPC_3695 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family YPC_3695 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily YPC_3696 IPR013785 Aldolase-type TIM barrel YPC_3696 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria YPC_3696 IPR024924 7-carboxy-7-deazaguanine synthase-like YPC_3696 IPR007197 Radical SAM YPC_3699 IPR001424 Superoxide dismutase, copper/zinc binding domain YPC_3699 IPR018152 Superoxide dismutase, copper/zinc, binding site YPC_3699 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone YPC_3699 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily YPC_3700 IPR000941 Enolase YPC_3700 IPR020810 Enolase, C-terminal TIM barrel domain YPC_3700 IPR036849 Enolase-like, C-terminal domain superfamily YPC_3700 IPR029017 Enolase-like, N-terminal YPC_3700 IPR020811 Enolase, N-terminal YPC_3700 IPR020809 Enolase, conserved site YPC_3701 IPR033828 CTP synthase GATase domain YPC_3701 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3701 IPR017456 CTP synthase, N-terminal YPC_3701 IPR004468 CTP synthase YPC_3701 IPR029062 Class I glutamine amidotransferase-like YPC_3701 IPR017926 Glutamine amidotransferase YPC_3702 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core YPC_3702 IPR011551 NTP pyrophosphohydrolase MazG YPC_3704 IPR033655 RelA, TGS domain YPC_3704 IPR002912 ACT domain YPC_3704 IPR012675 Beta-grasp domain superfamily YPC_3704 IPR003607 HD/PDEase domain YPC_3704 IPR004811 RelA/SpoT family YPC_3704 IPR004095 TGS YPC_3704 IPR012676 TGS-like YPC_3704 IPR007685 RelA/SpoT YPC_3705 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_3705 IPR030391 RNA methyltransferase TrmA, conserved site YPC_3705 IPR012340 Nucleic acid-binding, OB-fold YPC_3705 IPR030390 RNA methyltransferase TrmA, active site YPC_3705 IPR002792 TRAM domain YPC_3705 IPR010280 (Uracil-5)-methyltransferase family YPC_3705 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD YPC_3707 IPR019247 Histidine kinase BarA, N-terminal YPC_3707 IPR036641 HPT domain superfamily YPC_3707 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_3707 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_3707 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPC_3707 IPR003594 Histidine kinase/HSP90-like ATPase YPC_3707 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_3707 IPR001789 Signal transduction response regulator, receiver domain YPC_3707 IPR011006 CheY-like superfamily YPC_3707 IPR003660 HAMP domain YPC_3707 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_3707 IPR005467 Histidine kinase domain YPC_3708 IPR009003 Peptidase S1, PA clan YPC_3708 IPR011782 Peptidase S1C, Do YPC_3708 IPR036034 PDZ superfamily YPC_3708 IPR001478 PDZ domain YPC_3708 IPR001940 Peptidase S1C YPC_3709 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily YPC_3709 IPR006261 dNTP triphosphohydrolase YPC_3709 IPR020779 dNTP triphosphohydrolase, type 1 YPC_3709 IPR003607 HD/PDEase domain YPC_3709 IPR006674 HD domain YPC_3709 IPR026875 Phosphohydrolase-associated domain YPC_3710 IPR010049 MTA/SAH nucleosidase YPC_3710 IPR000845 Nucleoside phosphorylase domain YPC_3710 IPR035994 Nucleoside phosphorylase superfamily YPC_3711 IPR023544 ABC transporter, vitamin B12-binding protein YPC_3711 IPR002491 ABC transporter periplasmic binding domain YPC_3712 IPR005115 Uncharacterised domain UPF0126 YPC_3714 IPR035903 HesB-like domain superfamily YPC_3714 IPR016092 FeS cluster insertion protein YPC_3714 IPR000361 FeS cluster biogenesis YPC_3714 IPR017870 FeS cluster insertion, C-terminal, conserved site YPC_3714 IPR023063 FeS cluster insertion protein ErpA YPC_3717 IPR015424 Pyridoxal phosphate-dependent transferase YPC_3717 IPR005814 Aminotransferase class-III YPC_3717 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase YPC_3717 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_3717 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_3719 IPR000522 ABC transporter, permease protein, BtuC-like YPC_3719 IPR037294 ABC transporter, BtuC-like YPC_3720 IPR002491 ABC transporter periplasmic binding domain YPC_3721 IPR003439 ABC transporter-like YPC_3721 IPR017871 ABC transporter, conserved site YPC_3721 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3721 IPR003593 AAA+ ATPase domain YPC_3722 IPR023346 Lysozyme-like domain superfamily YPC_3722 IPR028166 Bifunctional transglycosylase second domain YPC_3722 IPR001460 Penicillin-binding protein, transpeptidase YPC_3722 IPR036950 Penicillin binding protein transglycosylase domain YPC_3722 IPR011813 Penicillin-binding protein 1B YPC_3722 IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain YPC_3722 IPR001264 Glycosyl transferase, family 51 YPC_3722 IPR012338 Beta-lactamase/transpeptidase-like YPC_3723 IPR010225 ATP-dependent helicase HrpB YPC_3723 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_3723 IPR007502 Helicase-associated domain YPC_3723 IPR011545 DEAD/DEAH box helicase domain YPC_3723 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3723 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal YPC_3723 IPR001650 Helicase, C-terminal YPC_3724 IPR014051 Phosphoesterase, HXTX YPC_3724 IPR009097 Cyclic phosphodiesterase YPC_3724 IPR004175 RNA 2',3'-cyclic phosphodiesterase YPC_3725 IPR005224 Sugar fermentation stimulation protein YPC_3725 IPR041465 SfsA, N-terminal OB domain YPC_3725 IPR040452 Sugar fermentation stimulation protein, C-terminal YPC_3726 IPR020458 Zinc finger, DksA/TraR C4-type conserved site YPC_3726 IPR000962 Zinc finger, DksA/TraR C4-type YPC_3726 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria YPC_3726 IPR037187 DksA, N-terminal domain superfamily YPC_3726 IPR012784 RNA polymerase-binding transcription factor DksA YPC_3727 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPC_3727 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPC_3727 IPR022380 Glutamyl-Q tRNA(Asp) synthetase YPC_3727 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_3728 IPR010206 Poly(A) polymerase I YPC_3728 IPR025866 Polymerase A arginine-rich C-terminal domain YPC_3728 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain YPC_3728 IPR002646 Poly A polymerase, head domain YPC_3729 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily YPC_3729 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YPC_3730 IPR040442 Pyruvate kinase-like domain superfamily YPC_3730 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPC_3730 IPR003700 Ketopantoate hydroxymethyltransferase YPC_3731 IPR003721 Pantoate-beta-alanine ligase YPC_3731 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_3731 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain YPC_3732 IPR009010 Aspartate decarboxylase-like domain superfamily YPC_3732 IPR003190 Aspartate decarboxylase YPC_3735 IPR000412 ABC-2 transporter YPC_3735 IPR013525 ABC-2 type transporter YPC_3736 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3736 IPR003593 AAA+ ATPase domain YPC_3736 IPR003439 ABC transporter-like YPC_3736 IPR017871 ABC transporter, conserved site YPC_3737 IPR036874 Carbonic anhydrase superfamily YPC_3737 IPR001765 Carbonic anhydrase YPC_3737 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site YPC_3738 IPR029057 Phosphoribosyltransferase-like YPC_3738 IPR000836 Phosphoribosyltransferase domain YPC_3738 IPR005904 Hypoxanthine phosphoribosyl transferase YPC_3739 IPR001117 Multicopper oxidase, type 1 YPC_3739 IPR011706 Multicopper oxidase, type 2 YPC_3739 IPR002355 Multicopper oxidase, copper-binding site YPC_3739 IPR011707 Multicopper oxidase, type 3 YPC_3739 IPR008972 Cupredoxin YPC_3739 IPR006311 Twin-arginine translocation pathway, signal sequence YPC_3739 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPC_3740 IPR038432 PulS/OutS-like superfamily YPC_3740 IPR019114 Chaperone lipoprotein, PulS/OutS-like YPC_3741 IPR001045 Spermidine/spermine synthases YPC_3741 IPR035246 Spermidine synthase, tetramerisation domain YPC_3741 IPR030373 Polyamine biosynthesis domain, conserved site YPC_3741 IPR030374 Polyamine biosynthesis domain YPC_3741 IPR037163 Spermidine synthase, tetramerisation domain superfamily YPC_3741 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_3742 IPR016067 S-adenosylmethionine decarboxylase, core YPC_3742 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic YPC_3742 IPR009165 S-adenosylmethionine decarboxylase, bacterial YPC_3744 IPR000620 EamA domain YPC_3746 IPR008249 Uncharacterised protein family UPF0231 YPC_3748 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPC_3748 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPC_3748 IPR015933 Aconitase B, HEAT-like domain YPC_3748 IPR036288 Aconitase B, HEAT-like domain superfamily YPC_3748 IPR015932 Aconitase, domain 2 YPC_3748 IPR004406 Aconitase B YPC_3748 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain YPC_3748 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPC_3748 IPR036008 Aconitase, iron-sulfur domain YPC_3748 IPR015929 Aconitase B, swivel YPC_3750 IPR036515 Transposase IS200-like superfamily YPC_3750 IPR002686 Transposase IS200-like YPC_3752 IPR006258 Dihydrolipoamide dehydrogenase YPC_3752 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YPC_3752 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPC_3752 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPC_3752 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_3752 IPR023753 FAD/NAD(P)-binding domain YPC_3752 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YPC_3754 IPR011053 Single hybrid motif YPC_3754 IPR004167 Peripheral subunit-binding domain YPC_3754 IPR000089 Biotin/lipoyl attachment YPC_3754 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex YPC_3754 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPC_3754 IPR036625 E3-binding domain superfamily YPC_3754 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPC_3754 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain YPC_3755 IPR004660 Pyruvate dehydrogenase E1 component YPC_3755 IPR029061 Thiamin diphosphate-binding fold YPC_3755 IPR005474 Transketolase, N-terminal YPC_3755 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPC_3755 IPR041621 Pyruvate dehydrogenase E1 component, middle domain YPC_3755 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal YPC_3756 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3756 IPR036390 Winged helix DNA-binding domain superfamily YPC_3756 IPR008920 Transcription regulator FadR/GntR, C-terminal YPC_3756 IPR000524 Transcription regulator HTH, GntR YPC_3756 IPR011711 GntR, C-terminal YPC_3757 IPR004840 Amino acid permease, conserved site YPC_3757 IPR004841 Amino acid permease/ SLC12A domain YPC_3758 IPR031347 Protein AmpE YPC_3759 IPR031347 Protein AmpE YPC_3760 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily YPC_3760 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPC_3761 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal YPC_3761 IPR004393 Nicotinate-nucleotide pyrophosphorylase YPC_3761 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal YPC_3761 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily YPC_3761 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal YPC_3761 IPR013785 Aldolase-type TIM barrel YPC_3761 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD YPC_3762 IPR012902 Prokaryotic N-terminal methylation site YPC_3763 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3763 IPR007831 General secretory system II, protein E, N-terminal YPC_3763 IPR001482 Type II/IV secretion system protein YPC_3764 IPR003004 GspF/PilC family YPC_3764 IPR001992 Type II secretion system conserved site YPC_3764 IPR018076 Type II secretion system F domain YPC_3764 IPR042094 Type II secretion system F domain superfamily YPC_3765 IPR001093 IMP dehydrogenase/GMP reductase YPC_3765 IPR005993 GMP reductase YPC_3765 IPR013785 Aldolase-type TIM barrel YPC_3765 IPR015875 IMP dehydrogenase / GMP reductase, conserved site YPC_3766 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3766 IPR001977 Dephospho-CoA kinase YPC_3767 IPR036268 ZapD domain superfamily YPC_3767 IPR027462 Z ring-associated protein D, C-terminal YPC_3767 IPR009777 Cell division protein ZapD YPC_3768 IPR005584 DNA gyrase inhibitor YacG YPC_3768 IPR013088 Zinc finger, NHR/GATA-type YPC_3770 IPR017894 HTH domain, IS21 transposase-type YPC_3770 IPR036397 Ribonuclease H superfamily YPC_3770 IPR001584 Integrase, catalytic core YPC_3770 IPR012337 Ribonuclease H-like superfamily YPC_3770 IPR006120 Resolvase, HTH domain YPC_3771 IPR002611 IstB-like ATP-binding protein YPC_3771 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3771 IPR003593 AAA+ ATPase domain YPC_3771 IPR001270 ClpA/B family YPC_3771 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_3772 IPR037198 MutL, C-terminal domain superfamily YPC_3772 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPC_3772 IPR014790 MutL, C-terminal, dimerisation YPC_3772 IPR014762 DNA mismatch repair, conserved site YPC_3772 IPR020667 DNA mismatch repair protein, MutL YPC_3772 IPR042120 MutL, C-terminal domain, dimerisation subdomain YPC_3772 IPR013507 DNA mismatch repair protein, S5 domain 2-like YPC_3772 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms YPC_3772 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_3772 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_3772 IPR042121 MutL, C-terminal domain, regulatory subdomain YPC_3772 IPR002099 DNA mismatch repair protein family, N-terminal YPC_3774 IPR013762 Integrase-like, catalytic domain superfamily YPC_3774 IPR002104 Integrase, catalytic domain YPC_3774 IPR025166 Integrase, DNA-binding domain YPC_3774 IPR010998 Integrase/recombinase, N-terminal YPC_3774 IPR038488 Integrase, DNA-binding domain superfamily YPC_3774 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPC_3778 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B YPC_3778 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal YPC_3778 IPR023042 Peptidase M17, leucine aminopeptidase YPC_3778 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal YPC_3779 IPR036768 DNA polymerase III subunit chi superfamily YPC_3779 IPR007459 DNA polymerase III chi subunit, HolC YPC_3780 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPC_3780 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_3780 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPC_3780 IPR033705 Valyl tRNA synthetase, anticodon-binding domain YPC_3780 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPC_3780 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPC_3780 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily YPC_3780 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm YPC_3780 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm YPC_3780 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPC_3780 IPR002303 Valine-tRNA ligase YPC_3781 IPR016181 Acyl-CoA N-acyltransferase YPC_3781 IPR000182 GNAT domain YPC_3782 IPR009671 Regulator of ribonuclease activity B domain YPC_3782 IPR036701 RraB-like superfamily YPC_3782 IPR016716 Regulator of ribonuclease activity B YPC_3783 IPR024904 Ornithine carbamoyltransferase YPC_3783 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YPC_3783 IPR006130 Aspartate/ornithine carbamoyltransferase YPC_3783 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily YPC_3783 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YPC_3783 IPR002292 Ornithine/putrescine carbamoyltransferase YPC_3784 IPR004375 YhcH/YjgK/YiaL family YPC_3784 IPR037012 YhcH/YjgK/YiaL superfamily YPC_3787 IPR035906 MetI-like superfamily YPC_3787 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_3788 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPC_3788 IPR035906 MetI-like superfamily YPC_3788 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_3789 IPR003593 AAA+ ATPase domain YPC_3789 IPR003439 ABC transporter-like YPC_3789 IPR017871 ABC transporter, conserved site YPC_3789 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPC_3789 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3790 IPR003593 AAA+ ATPase domain YPC_3790 IPR003439 ABC transporter-like YPC_3790 IPR017871 ABC transporter, conserved site YPC_3790 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPC_3790 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3791 IPR005144 ATP-cone domain YPC_3791 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPC_3791 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic YPC_3791 IPR001150 Glycine radical domain YPC_3792 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic YPC_3792 IPR034457 Organic radical-activating enzymes YPC_3792 IPR001989 Radical-activating enzyme, conserved site YPC_3792 IPR013785 Aldolase-type TIM barrel YPC_3795 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPC_3795 IPR036390 Winged helix DNA-binding domain superfamily YPC_3795 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3795 IPR011663 UbiC transcription regulator-associated YPC_3795 IPR000524 Transcription regulator HTH, GntR YPC_3795 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF YPC_3796 IPR009609 Phosphonate metabolism PhnG YPC_3797 IPR038058 PhnH-like superfamily YPC_3797 IPR008772 Bacterial phosphonate metabolism, PhnH YPC_3798 IPR008773 Phosphonate metabolism protein PhnI YPC_3799 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase YPC_3800 IPR017871 ABC transporter, conserved site YPC_3800 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3800 IPR012700 Phosphonate C-P lyase system, PhnK YPC_3800 IPR003439 ABC transporter-like YPC_3800 IPR003593 AAA+ ATPase domain YPC_3801 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3801 IPR012701 Phosphonate C-P lyase system, PhnL YPC_3801 IPR003593 AAA+ ATPase domain YPC_3801 IPR003439 ABC transporter-like YPC_3801 IPR017871 ABC transporter, conserved site YPC_3802 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPC_3802 IPR012696 Phosphonate metabolism PhnM YPC_3802 IPR013108 Amidohydrolase 3 YPC_3802 IPR032466 Metal-dependent hydrolase YPC_3803 IPR008144 Guanylate kinase-like domain YPC_3803 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN YPC_3803 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3803 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YPC_3804 IPR001279 Metallo-beta-lactamase YPC_3804 IPR035682 Phosphonate metabolism protein, MBL domain YPC_3804 IPR017693 Phosphonate metabolism protein PhnP YPC_3804 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPC_3805 IPR016040 NAD(P)-binding domain YPC_3805 IPR036291 NAD(P)-binding domain superfamily YPC_3805 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPC_3806 IPR011194 Uncharacterised protein family UPF0306 YPC_3806 IPR012349 FMN-binding split barrel YPC_3808 IPR008995 Molybdate/tungstate binding, C-terminal YPC_3808 IPR005116 Transport-associated OB, type 1 YPC_3808 IPR040582 MalK, OB fold domain YPC_3808 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3808 IPR017871 ABC transporter, conserved site YPC_3808 IPR003593 AAA+ ATPase domain YPC_3808 IPR003439 ABC transporter-like YPC_3809 IPR035906 MetI-like superfamily YPC_3809 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_3811 IPR006059 Bacterial extracellular solute-binding protein YPC_3814 IPR022992 Uncharacterised protein family UPF0213, GIY-YIG endonuclease YPC_3814 IPR035901 GIY-YIG endonuclease superfamily YPC_3814 IPR000305 GIY-YIG endonuclease YPC_3815 IPR000182 GNAT domain YPC_3815 IPR016181 Acyl-CoA N-acyltransferase YPC_3820 IPR010131 RND efflux system, outer membrane lipoprotein, NodT YPC_3820 IPR003423 Outer membrane efflux protein YPC_3820 IPR012640 Membrane lipoprotein, lipid attachment site YPC_3821 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPC_3821 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPC_3821 IPR001036 Acriflavin resistance protein YPC_3824 IPR011251 Luciferase-like domain YPC_3824 IPR036661 Luciferase-like domain superfamily YPC_3824 IPR019949 Luciferase family oxidoreductase, group 1 YPC_3825 IPR011251 Luciferase-like domain YPC_3825 IPR036661 Luciferase-like domain superfamily YPC_3825 IPR019949 Luciferase family oxidoreductase, group 1 YPC_3827 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_3827 IPR001387 Cro/C1-type helix-turn-helix domain YPC_3830 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPC_3830 IPR011545 DEAD/DEAH box helicase domain YPC_3830 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain YPC_3830 IPR028618 ATP-dependent RNA helicase DeaD YPC_3830 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_3830 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YPC_3830 IPR034415 CsdA, RNA recognition motif YPC_3830 IPR021046 Cold-shock protein, DEAD box A, C-terminal YPC_3830 IPR001650 Helicase, C-terminal YPC_3830 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3830 IPR014014 RNA helicase, DEAD-box type, Q motif YPC_3831 IPR011990 Tetratricopeptide-like helical domain superfamily YPC_3831 IPR013026 Tetratricopeptide repeat-containing domain YPC_3831 IPR013105 Tetratricopeptide repeat 2 YPC_3831 IPR023605 Lipoprotein NlpI YPC_3831 IPR019734 Tetratricopeptide repeat YPC_3832 IPR036345 Exoribonuclease, PH domain 2 superfamily YPC_3832 IPR004087 K Homology domain YPC_3832 IPR003029 S1 domain YPC_3832 IPR004088 K Homology domain, type 1 YPC_3832 IPR036612 K Homology domain, type 1 superfamily YPC_3832 IPR001247 Exoribonuclease, phosphorolytic domain 1 YPC_3832 IPR012340 Nucleic acid-binding, OB-fold YPC_3832 IPR012162 Polyribonucleotide nucleotidyltransferase YPC_3832 IPR027408 PNPase/RNase PH domain superfamily YPC_3832 IPR015847 Exoribonuclease, phosphorolytic domain 2 YPC_3832 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain YPC_3832 IPR022967 RNA-binding domain, S1 YPC_3832 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily YPC_3832 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_3833 IPR036397 Ribonuclease H superfamily YPC_3833 IPR025948 HTH-like domain YPC_3833 IPR001584 Integrase, catalytic core YPC_3833 IPR038965 Transposase InsF-like YPC_3833 IPR012337 Ribonuclease H-like superfamily YPC_3835 IPR001029 Flagellin, D0/D1 domain YPC_3835 IPR001492 Flagellin YPC_3835 IPR042187 Flagellin, C-terminal domain, subdomain 2 YPC_3837 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3837 IPR040970 CadC C-terminal domain 1 YPC_3837 IPR001867 OmpR/PhoB-type DNA-binding domain YPC_3837 IPR016032 Signal transduction response regulator, C-terminal effector YPC_3837 IPR011990 Tetratricopeptide-like helical domain superfamily YPC_3837 IPR039420 Transcriptional regulatory protein WalR-like YPC_3841 IPR002371 Flagellar hook-associated protein 1 YPC_3841 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPC_3841 IPR001444 Flagellar basal body rod protein, N-terminal YPC_3843 IPR001782 Flagellar P-ring protein YPC_3844 IPR000527 Flagellar L-ring protein YPC_3845 IPR012834 Flagellar basal-body rod FlgG YPC_3845 IPR001444 Flagellar basal body rod protein, N-terminal YPC_3845 IPR019776 Flagellar basal body rod protein, conserved site YPC_3845 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPC_3845 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPC_3845 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPC_3846 IPR019776 Flagellar basal body rod protein, conserved site YPC_3846 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPC_3846 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPC_3846 IPR001444 Flagellar basal body rod protein, N-terminal YPC_3846 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPC_3847 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPC_3847 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPC_3847 IPR019776 Flagellar basal body rod protein, conserved site YPC_3847 IPR001444 Flagellar basal body rod protein, N-terminal YPC_3847 IPR037058 Flagellar hook protein FlgE superfamily YPC_3847 IPR011491 Flagellar hook protein FlgE YPC_3847 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPC_3848 IPR005648 Flagellar hook capping protein YPC_3848 IPR025963 FlgD Tudor-like domain YPC_3848 IPR025965 FlgD Ig-like domain YPC_3849 IPR006299 Flagellar basal-body rod protein FlgC YPC_3849 IPR001444 Flagellar basal body rod protein, N-terminal YPC_3849 IPR019776 Flagellar basal body rod protein, conserved site YPC_3849 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPC_3850 IPR006300 Flagellar basal-body rod protein FlgB YPC_3850 IPR001444 Flagellar basal body rod protein, N-terminal YPC_3850 IPR019776 Flagellar basal body rod protein, conserved site YPC_3851 IPR013974 SAF domain YPC_3851 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YPC_3851 IPR039246 Flagellar protein FlgA YPC_3855 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPC_3855 IPR005714 ATPase, type III secretion system, FliI/YscN YPC_3855 IPR003593 AAA+ ATPase domain YPC_3855 IPR020005 Flagellar export ATPase FliI, clade 1 YPC_3855 IPR032463 ATPase, type III secretion system, FliI YPC_3855 IPR040627 T3SS EscN ATPase, C-terminal YPC_3855 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3855 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPC_3858 IPR000067 Flagellar M-ring protein FliF YPC_3858 IPR006182 Secretory protein YscJ/FliF YPC_3858 IPR013556 Flagellar M-ring C-terminal YPC_3859 IPR001624 Flagellar hook-basal body complex protein FliE YPC_3860 IPR001789 Signal transduction response regulator, receiver domain YPC_3860 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPC_3860 IPR002078 RNA polymerase sigma factor 54 interaction domain YPC_3860 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3860 IPR002197 DNA binding HTH domain, Fis-type YPC_3860 IPR025944 Sigma-54 interaction domain, conserved site YPC_3860 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPC_3860 IPR009057 Homeobox-like domain superfamily YPC_3860 IPR011006 CheY-like superfamily YPC_3860 IPR003593 AAA+ ATPase domain YPC_3862 IPR036429 SpoA-like superfamily YPC_3862 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPC_3862 IPR001543 Surface presentation of antigen (SpoA) YPC_3862 IPR012826 Flagellar motor switch FliN YPC_3863 IPR005837 Flagellar transport protein FliP YPC_3863 IPR005838 Type III secretion system inner membrane P protein YPC_3864 IPR006305 Flagellar biosynthesis protein FliQ YPC_3864 IPR002191 Bacterial export protein family 3 YPC_3865 IPR006303 Flagellar biosynthesis protein FliR YPC_3865 IPR002010 Type III secretion system inner membrane R protein YPC_3866 IPR029025 Type III secretion system substrate exporter, C-terminal YPC_3866 IPR006135 Type III secretion system substrate exporter YPC_3866 IPR006136 Flagellar biosynthetic protein FlhB YPC_3867 IPR006301 Flagellar biosynthesis protein FlhA YPC_3867 IPR042194 FHIPEP, domain 1 YPC_3867 IPR025505 FHIPEP conserved site YPC_3867 IPR001712 Type III secretion system FHIPEP YPC_3867 IPR042196 FHIPEP, domain 4 YPC_3867 IPR042193 FHIPEP, domain 3 YPC_3873 IPR002491 ABC transporter periplasmic binding domain YPC_3874 IPR000259 Fimbrial-type adhesion domain YPC_3874 IPR036937 Fimbrial-type adhesion domain superfamily YPC_3874 IPR008966 Adhesion domain superfamily YPC_3874 IPR015303 Fimbrial adhesin F17-AG, lectin domain YPC_3875 IPR018046 Pili assembly chaperone, conserved site YPC_3875 IPR016147 Pili assembly chaperone, N-terminal YPC_3875 IPR001829 Pili assembly chaperone, bacterial YPC_3875 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPC_3875 IPR008962 PapD-like superfamily YPC_3875 IPR013783 Immunoglobulin-like fold YPC_3875 IPR016148 Pili assembly chaperone, C-terminal YPC_3876 IPR025885 PapC, N-terminal domain YPC_3876 IPR000015 Outer membrane usher protein YPC_3876 IPR018030 Fimbrial membrane usher, conserved site YPC_3876 IPR042186 Outer membrane usher protein FimD, plug domain YPC_3876 IPR025949 PapC-like, C-terminal domain YPC_3876 IPR037224 PapC, N-terminal domain superfamily YPC_3881 IPR014004 Transport-associated and nodulation domain, bacteria YPC_3881 IPR032789 Pilus formation protein, N-terminal YPC_3881 IPR001775 GspD/PilQ family YPC_3881 IPR007055 BON domain YPC_3881 IPR004846 Type II/III secretion system YPC_3882 IPR032789 Pilus formation protein, N-terminal YPC_3882 IPR004846 Type II/III secretion system YPC_3882 IPR014004 Transport-associated and nodulation domain, bacteria YPC_3882 IPR001775 GspD/PilQ family YPC_3882 IPR007055 BON domain YPC_3884 IPR022399 Helicase/secretion neighbourhood ATPase YPC_3884 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3884 IPR001482 Type II/IV secretion system protein YPC_3891 IPR003400 Biopolymer transport protein ExbD/TolR YPC_3891 IPR014170 TonB system transport protein ExbD type-1 YPC_3892 IPR002898 MotA/TolQ/ExbB proton channel YPC_3892 IPR014164 TonB-system energizer ExbB type-1 YPC_3893 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPC_3893 IPR006233 Cystathionine beta-lyase, bacterial YPC_3893 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_3893 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPC_3893 IPR015424 Pyridoxal phosphate-dependent transferase YPC_3894 IPR032818 DedA family YPC_3894 IPR032816 SNARE associated Golgi protein YPC_3895 IPR009057 Homeobox-like domain superfamily YPC_3895 IPR018060 DNA binding HTH domain, AraC-type YPC_3895 IPR009594 Transcription regulator HTH, AraC, N-terminal YPC_3896 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPC_3896 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YPC_3898 IPR018170 Aldo/keto reductase, conserved site YPC_3898 IPR036812 NADP-dependent oxidoreductase domain superfamily YPC_3898 IPR023210 NADP-dependent oxidoreductase domain YPC_3898 IPR020471 Aldo/keto reductase YPC_3899 IPR020612 Methylthiotransferase, conserved site YPC_3899 IPR006638 Elp3/MiaB/NifB YPC_3899 IPR022946 Uncharacterised protein family UPF0313 YPC_3899 IPR007197 Radical SAM YPC_3899 IPR023404 Radical SAM, alpha/beta horseshoe YPC_3899 IPR013704 Uncharacterised protein family UPF0313, N-terminal YPC_3899 IPR024560 Uncharacterised protein family UPF0313, C-terminal YPC_3900 IPR007197 Radical SAM YPC_3900 IPR022946 Uncharacterised protein family UPF0313 YPC_3900 IPR020612 Methylthiotransferase, conserved site YPC_3900 IPR024560 Uncharacterised protein family UPF0313, C-terminal YPC_3900 IPR013704 Uncharacterised protein family UPF0313, N-terminal YPC_3900 IPR023404 Radical SAM, alpha/beta horseshoe YPC_3900 IPR006638 Elp3/MiaB/NifB YPC_3901 IPR011706 Multicopper oxidase, type 2 YPC_3901 IPR026589 Cell division protein FtsP YPC_3901 IPR006311 Twin-arginine translocation pathway, signal sequence YPC_3901 IPR008972 Cupredoxin YPC_3901 IPR011707 Multicopper oxidase, type 3 YPC_3902 IPR002123 Phospholipid/glycerol acyltransferase YPC_3902 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase YPC_3903 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta YPC_3903 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YPC_3903 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat YPC_3903 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YPC_3903 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily YPC_3903 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative YPC_3903 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal YPC_3904 IPR003680 Flavodoxin-like fold YPC_3904 IPR029039 Flavoprotein-like superfamily YPC_3905 IPR000847 Transcription regulator HTH, LysR YPC_3905 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3905 IPR005119 LysR, substrate-binding YPC_3905 IPR036390 Winged helix DNA-binding domain superfamily YPC_3906 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 YPC_3906 IPR001241 DNA topoisomerase, type IIA YPC_3906 IPR018522 DNA topoisomerase, type IIA, conserved site YPC_3906 IPR002288 DNA gyrase B subunit, C-terminal YPC_3906 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_3906 IPR006171 TOPRIM domain YPC_3906 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative YPC_3906 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YPC_3906 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal YPC_3906 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_3906 IPR003594 Histidine kinase/HSP90-like ATPase YPC_3906 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPC_3907 IPR029058 Alpha/Beta hydrolase fold YPC_3907 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YPC_3908 IPR029052 Metallo-dependent phosphatase-like YPC_3908 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPC_3908 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA YPC_3910 IPR009659 Protein of unknown function DUF1249 YPC_3911 IPR004385 Nucleoside diphosphate pyrophosphatase YPC_3911 IPR015797 NUDIX hydrolase-like domain superfamily YPC_3911 IPR020084 NUDIX hydrolase, conserved site YPC_3911 IPR000086 NUDIX hydrolase domain YPC_3912 IPR010130 Type I secretion outer membrane protein, TolC YPC_3912 IPR003423 Outer membrane efflux protein YPC_3914 IPR009576 Biofilm formation YgiB YPC_3915 IPR016185 Pre-ATP-grasp domain superfamily YPC_3915 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain YPC_3916 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YPC_3916 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type YPC_3918 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB YPC_3918 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YPC_3919 IPR007475 Ubiquinone biosynthesis accessory factor UbiK YPC_3921 IPR002293 Amino acid/polyamine transporter I YPC_3922 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPC_3922 IPR023030 Bifunctional protein HldE YPC_3922 IPR011611 Carbohydrate kinase PfkB YPC_3922 IPR011914 RfaE bifunctional protein, domain II YPC_3922 IPR029056 Ribokinase-like YPC_3922 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_3922 IPR011913 RfaE bifunctional protein, domain I YPC_3922 IPR004821 Cytidyltransferase-like domain YPC_3923 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain YPC_3923 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme YPC_3923 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YPC_3925 IPR007899 CHAD domain YPC_3925 IPR033469 CYTH-like domain superfamily YPC_3925 IPR023577 CYTH domain YPC_3925 IPR039013 Inorganic triphosphatase YgiF YPC_3926 IPR003646 SH3-like domain, bacterial-type YPC_3926 IPR016476 SH3 domain protein YPC_3927 IPR003607 HD/PDEase domain YPC_3927 IPR006674 HD domain YPC_3927 IPR002646 Poly A polymerase, head domain YPC_3927 IPR012006 tRNA nucleotidyltransferase, proteobacteria YPC_3927 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain YPC_3928 IPR003824 Undecaprenyl-diphosphatase UppP YPC_3929 IPR006157 Dihydroneopterin aldolase/epimerase domain YPC_3929 IPR006156 Dihydroneopterin aldolase YPC_3930 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY YPC_3931 IPR017861 Kae1/TsaD family YPC_3931 IPR017860 Peptidase M22, conserved site YPC_3931 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD YPC_3931 IPR000905 Gcp-like domain YPC_3933 IPR018278 Ribosomal protein S21, conserved site YPC_3933 IPR001911 Ribosomal protein S21 YPC_3933 IPR038380 Ribosomal protein S21 superfamily YPC_3934 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YPC_3934 IPR013264 DNA primase, catalytic core, N-terminal YPC_3934 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily YPC_3934 IPR019475 DNA primase, DnaB-helicase binding domain YPC_3934 IPR006295 DNA primase, DnaG YPC_3934 IPR013173 DNA primase DnaG, DnaB-binding domain YPC_3934 IPR030846 DNA primase DnaG, bacteria YPC_3934 IPR036977 DNA Primase, CHC2-type zinc finger YPC_3934 IPR006171 TOPRIM domain YPC_3934 IPR002694 Zinc finger, CHC2-type YPC_3934 IPR034151 Bacterial DnaG primase, TOPRIM domain YPC_3935 IPR013325 RNA polymerase sigma factor, region 2 YPC_3935 IPR007127 RNA polymerase sigma factor 70, region 1.1 YPC_3935 IPR009042 RNA polymerase sigma-70 region 1.2 YPC_3935 IPR007627 RNA polymerase sigma-70 region 2 YPC_3935 IPR007631 RNA polymerase sigma factor 70, non-essential domain YPC_3935 IPR042189 Sigma-70 factor, region 1.1 superfamily YPC_3935 IPR013324 RNA polymerase sigma factor, region 3/4-like YPC_3935 IPR000943 RNA polymerase sigma-70 YPC_3935 IPR012760 RNA polymerase sigma factor RpoD, C-terminal YPC_3935 IPR007630 RNA polymerase sigma-70 region 4 YPC_3935 IPR028630 RNA polymerase sigma factor RpoD YPC_3935 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3935 IPR014284 RNA polymerase sigma-70 like domain YPC_3935 IPR007624 RNA polymerase sigma-70 region 3 YPC_3948 IPR005119 LysR, substrate-binding YPC_3948 IPR000847 Transcription regulator HTH, LysR YPC_3948 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_3948 IPR036390 Winged helix DNA-binding domain superfamily YPC_3952 IPR006056 RidA family YPC_3952 IPR019897 RidA, conserved site YPC_3952 IPR006175 YjgF/YER057c/UK114 family YPC_3952 IPR035959 RutC-like superfamily YPC_3960 IPR005694 Efflux pump membrane protein YPC_3960 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPC_3960 IPR030196 Multidrug resistance protein MdtN YPC_3961 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein YPC_3963 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily YPC_3963 IPR017853 Glycoside hydrolase superfamily YPC_3963 IPR013783 Immunoglobulin-like fold YPC_3963 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily YPC_3963 IPR001764 Glycoside hydrolase, family 3, N-terminal YPC_3963 IPR019800 Glycoside hydrolase, family 3, active site YPC_3963 IPR026891 Fibronectin type III-like domain YPC_3963 IPR002772 Glycoside hydrolase family 3 C-terminal domain YPC_3965 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_3965 IPR035906 MetI-like superfamily YPC_3966 IPR035906 MetI-like superfamily YPC_3966 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_3967 IPR006059 Bacterial extracellular solute-binding protein YPC_3968 IPR000843 LacI-type HTH domain YPC_3968 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_3968 IPR028082 Periplasmic binding protein-like I YPC_3969 IPR008928 Six-hairpin glycosidase superfamily YPC_3969 IPR012341 Six-hairpin glycosidase-like superfamily YPC_3969 IPR033432 Glycosyl hydrolase 36, catalytic domain YPC_3970 IPR008995 Molybdate/tungstate binding, C-terminal YPC_3970 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_3970 IPR005116 Transport-associated OB, type 1 YPC_3970 IPR003593 AAA+ ATPase domain YPC_3970 IPR003439 ABC transporter-like YPC_3970 IPR040582 MalK, OB fold domain YPC_3970 IPR017871 ABC transporter, conserved site YPC_3974 IPR006914 VENN motif-containing domain YPC_3974 IPR011050 Pectin lyase fold/virulence factor YPC_3974 IPR012334 Pectin lyase fold YPC_3974 IPR025157 Hemagglutinin repeat YPC_3974 IPR008638 Filamentous haemagglutinin, N-terminal YPC_3974 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPC_3974 IPR024973 ESPR domain YPC_3975 IPR012334 Pectin lyase fold YPC_3975 IPR025157 Hemagglutinin repeat YPC_3975 IPR008638 Filamentous haemagglutinin, N-terminal YPC_3975 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPC_3975 IPR024973 ESPR domain YPC_3975 IPR006914 VENN motif-containing domain YPC_3975 IPR011050 Pectin lyase fold/virulence factor YPC_3978 IPR025157 Hemagglutinin repeat YPC_3978 IPR011050 Pectin lyase fold/virulence factor YPC_3978 IPR008638 Filamentous haemagglutinin, N-terminal YPC_3978 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPC_3978 IPR006914 VENN motif-containing domain YPC_3978 IPR024973 ESPR domain YPC_3978 IPR012334 Pectin lyase fold YPC_3979 IPR012334 Pectin lyase fold YPC_3979 IPR011050 Pectin lyase fold/virulence factor YPC_3979 IPR006914 VENN motif-containing domain YPC_3979 IPR008638 Filamentous haemagglutinin, N-terminal YPC_3979 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPC_3979 IPR024973 ESPR domain YPC_3979 IPR025157 Hemagglutinin repeat YPC_3980 IPR008638 Filamentous haemagglutinin, N-terminal YPC_3980 IPR025157 Hemagglutinin repeat YPC_3980 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPC_3980 IPR012334 Pectin lyase fold YPC_3980 IPR011050 Pectin lyase fold/virulence factor YPC_3980 IPR024973 ESPR domain YPC_3980 IPR006914 VENN motif-containing domain YPC_3981 IPR024973 ESPR domain YPC_3981 IPR006914 VENN motif-containing domain YPC_3981 IPR011050 Pectin lyase fold/virulence factor YPC_3981 IPR012334 Pectin lyase fold YPC_3981 IPR008638 Filamentous haemagglutinin, N-terminal YPC_3981 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPC_3981 IPR025157 Hemagglutinin repeat YPC_3982 IPR035251 ShlB, POTRA domain YPC_3982 IPR034746 POTRA domain YPC_3982 IPR013686 Polypeptide-transport-associated, ShlB-type YPC_3982 IPR027282 Two partner secretion pathway transporter YPC_3982 IPR005565 Haemolysin activator HlyB, C-terminal YPC_3983 IPR002035 von Willebrand factor, type A YPC_3983 IPR036465 von Willebrand factor A-like domain superfamily YPC_3983 IPR011392 Tellurite resistance, TerY YPC_3984 IPR003325 TerD domain YPC_3986 IPR011392 Tellurite resistance, TerY YPC_3986 IPR036465 von Willebrand factor A-like domain superfamily YPC_3986 IPR002035 von Willebrand factor, type A YPC_3989 IPR005325 Protein of unknown function DUF308, membrane YPC_3991 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPC_3991 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_3991 IPR023753 FAD/NAD(P)-binding domain YPC_3991 IPR013785 Aldolase-type TIM barrel YPC_3992 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPC_3992 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD YPC_3992 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_3992 IPR007848 Methyltransferase small domain YPC_3993 IPR005546 Autotransporter beta-domain YPC_3993 IPR036709 Autotransporter beta-domain superfamily YPC_3993 IPR006315 Outer membrane autotransporter barrel YPC_3993 IPR011050 Pectin lyase fold/virulence factor YPC_3994 IPR002725 Protein of unknown function DUF45 YPC_3995 IPR036291 NAD(P)-binding domain superfamily YPC_3995 IPR000683 Oxidoreductase, N-terminal YPC_3996 IPR023025 Serine/threonine transporter SstT YPC_3996 IPR036458 Sodium:dicarboxylate symporter superfamily YPC_3996 IPR001991 Sodium:dicarboxylate symporter YPC_3998 IPR036515 Transposase IS200-like superfamily YPC_3998 IPR002686 Transposase IS200-like YPC_4002 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YPC_4002 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPC_4002 IPR029052 Metallo-dependent phosphatase-like YPC_4003 IPR007474 ApaG domain YPC_4003 IPR036767 ApaG domain superfamily YPC_4003 IPR023065 Uncharacterised protein family ApaG YPC_4004 IPR023165 rRNA adenine dimethylase-like YPC_4004 IPR011530 Ribosomal RNA adenine dimethylase YPC_4004 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal YPC_4004 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm YPC_4004 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site YPC_4004 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_4005 IPR005255 PdxA family YPC_4005 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase YPC_4006 IPR027304 Trigger factor/SurA domain superfamily YPC_4006 IPR015391 SurA N-terminal YPC_4006 IPR023034 Peptidyl-prolyl isomerase SurA YPC_4006 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YPC_4007 IPR005653 Organic solvent tolerance-like, N-terminal YPC_4007 IPR020889 LPS-assembly protein LptD YPC_4007 IPR007543 LptD, C-terminal YPC_4008 IPR007791 Co-chaperone DjlA, N-terminal YPC_4008 IPR029024 TerB-like YPC_4008 IPR023749 Co-chaperone DjlA YPC_4008 IPR036869 Chaperone J-domain superfamily YPC_4008 IPR001623 DnaJ domain YPC_4009 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPC_4009 IPR006145 Pseudouridine synthase, RsuA/RluA YPC_4009 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPC_4018 IPR036628 Clp, N-terminal domain superfamily YPC_4018 IPR018368 ClpA/B, conserved site 1 YPC_4018 IPR004176 Clp, N-terminal YPC_4018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4018 IPR003593 AAA+ ATPase domain YPC_4018 IPR003959 ATPase, AAA-type, core YPC_4018 IPR001270 ClpA/B family YPC_4018 IPR017729 Type VI secretion system, ATPase ClpV1 YPC_4018 IPR019489 Clp ATPase, C-terminal YPC_4018 IPR041546 ClpA/ClpB, AAA lid domain YPC_4019 IPR006531 Gp5 N-terminal YPC_4019 IPR037026 Vgr protein, OB-fold domain superfamily YPC_4019 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPC_4019 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPC_4031 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4031 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_4031 IPR040766 RapA, N-terminal Tudor-like domain 2 YPC_4031 IPR022737 RNA polymerase recycling, bacterial, C-terminal YPC_4031 IPR038718 SNF2-like, N-terminal domain superfamily YPC_4031 IPR040765 RapA, N-terminal Tudor like domain 1 YPC_4031 IPR023949 RNA polymerase-associated protein RapA YPC_4031 IPR000330 SNF2-related, N-terminal domain YPC_4031 IPR001650 Helicase, C-terminal YPC_4032 IPR006172 DNA-directed DNA polymerase, family B YPC_4032 IPR017964 DNA-directed DNA polymerase, family B, conserved site YPC_4032 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain YPC_4032 IPR042087 DNA polymerase family B, C-terminal domain YPC_4032 IPR036397 Ribonuclease H superfamily YPC_4032 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain YPC_4032 IPR012337 Ribonuclease H-like superfamily YPC_4032 IPR023211 DNA polymerase, palm domain superfamily YPC_4033 IPR032818 DedA family YPC_4033 IPR032816 SNARE associated Golgi protein YPC_4034 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4034 IPR017871 ABC transporter, conserved site YPC_4034 IPR003439 ABC transporter-like YPC_4034 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ YPC_4034 IPR003593 AAA+ ATPase domain YPC_4035 IPR005947 Thiamine ABC transporter, permease protein YPC_4035 IPR035906 MetI-like superfamily YPC_4035 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_4036 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter YPC_4036 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria YPC_4036 IPR006061 Solute-binding family 1, conserved site YPC_4038 IPR000914 Solute-binding protein family 5 domain YPC_4038 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YPC_4038 IPR023767 Transcriptional regulator SgrR YPC_4038 IPR036390 Winged helix DNA-binding domain superfamily YPC_4038 IPR039424 Solute-binding protein family 5 YPC_4040 IPR004750 Sugar efflux YPC_4040 IPR020846 Major facilitator superfamily domain YPC_4040 IPR011701 Major facilitator superfamily YPC_4040 IPR036259 MFS transporter superfamily YPC_4042 IPR033940 3-isopropylmalate dehydratase, swivel domain YPC_4042 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPC_4042 IPR004431 3-isopropylmalate dehydratase, small subunit YPC_4042 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain YPC_4043 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain YPC_4043 IPR033941 3-Isopropylmalate dehydratase, catalytic domain YPC_4043 IPR036008 Aconitase, iron-sulfur domain YPC_4043 IPR004430 3-isopropylmalate dehydratase, large subunit YPC_4043 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPC_4043 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPC_4044 IPR004429 Isopropylmalate dehydrogenase YPC_4044 IPR024084 Isopropylmalate dehydrogenase-like domain YPC_4044 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPC_4045 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YPC_4045 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site YPC_4045 IPR000891 Pyruvate carboxyltransferase YPC_4045 IPR005671 2-isopropylmalate synthase, bacterial-type YPC_4045 IPR013785 Aldolase-type TIM barrel YPC_4045 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily YPC_4046 IPR036515 Transposase IS200-like superfamily YPC_4046 IPR002686 Transposase IS200-like YPC_4049 IPR005119 LysR, substrate-binding YPC_4049 IPR036390 Winged helix DNA-binding domain superfamily YPC_4049 IPR000847 Transcription regulator HTH, LysR YPC_4049 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_4050 IPR042099 AMP-dependent synthetase-like superfamily YPC_4050 IPR000873 AMP-dependent synthetase/ligase YPC_4050 IPR020845 AMP-binding, conserved site YPC_4051 IPR029061 Thiamin diphosphate-binding fold YPC_4051 IPR012000 Thiamine pyrophosphate enzyme, central domain YPC_4051 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPC_4051 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPC_4051 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPC_4051 IPR000399 TPP-binding enzyme, conserved site YPC_4051 IPR039368 Acetolactate synthase large subunit, TPP binding domain YPC_4051 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPC_4052 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal YPC_4052 IPR002912 ACT domain YPC_4052 IPR004789 Acetolactate synthase, small subunit YPC_4052 IPR039557 AHAS, ACT domain YPC_4052 IPR019455 Acetolactate synthase, small subunit, C-terminal YPC_4054 IPR002686 Transposase IS200-like YPC_4054 IPR036515 Transposase IS200-like superfamily YPC_4055 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_4055 IPR000843 LacI-type HTH domain YPC_4055 IPR012781 D-fructose-responsive transcription factor YPC_4055 IPR028082 Periplasmic binding protein-like I YPC_4055 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPC_4056 IPR010574 L-alanine exporter AlaE YPC_4058 IPR007159 SpoVT-AbrB domain YPC_4058 IPR003444 Transcriptional regulator MraZ YPC_4058 IPR035644 MraZ, C-terminal YPC_4058 IPR038619 MraZ superfamily YPC_4058 IPR020603 MraZ domain YPC_4058 IPR035642 MraZ, N-terminal YPC_4058 IPR037914 SpoVT-AbrB domain superfamily YPC_4059 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily YPC_4059 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_4059 IPR002903 Ribosomal RNA small subunit methyltransferase H YPC_4060 IPR011922 Cell division protein FtsL YPC_4061 IPR001460 Penicillin-binding protein, transpeptidase YPC_4061 IPR037532 Peptidoglycan D,D-transpeptidase FtsI YPC_4061 IPR012338 Beta-lactamase/transpeptidase-like YPC_4061 IPR036138 Penicillin-binding protein, dimerisation domain superfamily YPC_4061 IPR005311 Penicillin-binding protein, dimerisation domain YPC_4062 IPR013221 Mur ligase, central YPC_4062 IPR036615 Mur ligase, C-terminal domain superfamily YPC_4062 IPR000713 Mur ligase, N-terminal catalytic domain YPC_4062 IPR035911 MurE/MurF, N-terminal YPC_4062 IPR036565 Mur-like, catalytic domain superfamily YPC_4062 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase YPC_4062 IPR004101 Mur ligase, C-terminal YPC_4063 IPR036615 Mur ligase, C-terminal domain superfamily YPC_4063 IPR000713 Mur ligase, N-terminal catalytic domain YPC_4063 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YPC_4063 IPR013221 Mur ligase, central YPC_4063 IPR036565 Mur-like, catalytic domain superfamily YPC_4063 IPR004101 Mur ligase, C-terminal YPC_4063 IPR035911 MurE/MurF, N-terminal YPC_4064 IPR000715 Glycosyl transferase, family 4 YPC_4064 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase YPC_4064 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YPC_4065 IPR013221 Mur ligase, central YPC_4065 IPR036615 Mur ligase, C-terminal domain superfamily YPC_4065 IPR004101 Mur ligase, C-terminal YPC_4065 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase YPC_4065 IPR036565 Mur-like, catalytic domain superfamily YPC_4066 IPR013437 Probable peptidoglycan glycosyltransferase FtsW YPC_4066 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA YPC_4066 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site YPC_4067 IPR004276 Glycosyltransferase family 28, N-terminal domain YPC_4067 IPR007235 Glycosyl transferase, family 28, C-terminal YPC_4067 IPR006009 N-acetylglucosaminyltransferase, MurG YPC_4068 IPR004101 Mur ligase, C-terminal YPC_4068 IPR013221 Mur ligase, central YPC_4068 IPR036565 Mur-like, catalytic domain superfamily YPC_4068 IPR000713 Mur ligase, N-terminal catalytic domain YPC_4068 IPR005758 UDP-N-acetylmuramate--L-alanine ligase YPC_4068 IPR036615 Mur ligase, C-terminal domain superfamily YPC_4069 IPR011127 D-alanine--D-alanine ligase, N-terminal domain YPC_4069 IPR011761 ATP-grasp fold YPC_4069 IPR013815 ATP-grasp fold, subdomain 1 YPC_4069 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site YPC_4069 IPR005905 D-alanine--D-alanine ligase YPC_4069 IPR016185 Pre-ATP-grasp domain superfamily YPC_4069 IPR011095 D-alanine--D-alanine ligase, C-terminal YPC_4070 IPR013685 POTRA domain, FtsQ-type YPC_4070 IPR005548 Cell division protein FtsQ/DivIB YPC_4070 IPR034746 POTRA domain YPC_4070 IPR026579 Cell division protein FtsQ YPC_4071 IPR020823 Cell division protein FtsA YPC_4071 IPR003494 SHS2 domain inserted in FtsA YPC_4072 IPR000158 Cell division protein FtsZ YPC_4072 IPR020805 Cell division protein FtsZ, conserved site YPC_4072 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain YPC_4072 IPR024757 Cell division protein FtsZ, C-terminal YPC_4072 IPR036525 Tubulin/FtsZ, GTPase domain superfamily YPC_4072 IPR003008 Tubulin/FtsZ, GTPase domain YPC_4072 IPR008280 Tubulin/FtsZ, C-terminal YPC_4073 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal YPC_4073 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal YPC_4073 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_4073 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase YPC_4075 IPR009502 Secretion monitor YPC_4076 IPR000185 Protein translocase subunit SecA YPC_4076 IPR036266 SecA, Wing/Scaffold superfamily YPC_4076 IPR011115 SecA DEAD-like, N-terminal YPC_4076 IPR020937 SecA conserved site YPC_4076 IPR014018 SecA motor DEAD YPC_4076 IPR011130 SecA, preprotein cross-linking domain YPC_4076 IPR011116 SecA Wing/Scaffold YPC_4076 IPR004027 SEC-C motif YPC_4076 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4076 IPR036670 SecA, preprotein cross-linking domain superfamily YPC_4078 IPR003561 Mutator MutT YPC_4078 IPR020476 NUDIX hydrolase YPC_4078 IPR015797 NUDIX hydrolase-like domain superfamily YPC_4078 IPR000086 NUDIX hydrolase domain YPC_4078 IPR020084 NUDIX hydrolase, conserved site YPC_4080 IPR001270 ClpA/B family YPC_4080 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_4080 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4080 IPR003593 AAA+ ATPase domain YPC_4080 IPR002611 IstB-like ATP-binding protein YPC_4081 IPR017894 HTH domain, IS21 transposase-type YPC_4081 IPR012337 Ribonuclease H-like superfamily YPC_4081 IPR006120 Resolvase, HTH domain YPC_4081 IPR036397 Ribonuclease H superfamily YPC_4081 IPR001584 Integrase, catalytic core YPC_4082 IPR004045 Glutathione S-transferase, N-terminal YPC_4082 IPR010987 Glutathione S-transferase, C-terminal-like YPC_4082 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPC_4082 IPR036249 Thioredoxin-like superfamily YPC_4082 IPR040079 Glutathione Transferase family YPC_4082 IPR016639 Glutathione S-transferase Omega/GSH YPC_4083 IPR032808 DoxX family YPC_4085 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III YPC_4086 IPR010279 Inner membrane protein YqjD/ElaB YPC_4089 IPR026574 Modulator protein MzrA YPC_4089 IPR027398 SecD export protein N-terminal TM domain YPC_4090 IPR032816 SNARE associated Golgi protein YPC_4090 IPR032818 DedA family YPC_4092 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_4092 IPR011711 GntR, C-terminal YPC_4092 IPR008920 Transcription regulator FadR/GntR, C-terminal YPC_4092 IPR036390 Winged helix DNA-binding domain superfamily YPC_4092 IPR000524 Transcription regulator HTH, GntR YPC_4093 IPR036259 MFS transporter superfamily YPC_4093 IPR020846 Major facilitator superfamily domain YPC_4093 IPR011701 Major facilitator superfamily YPC_4094 IPR032466 Metal-dependent hydrolase YPC_4094 IPR003766 Uronate isomerase YPC_4095 IPR036291 NAD(P)-binding domain superfamily YPC_4095 IPR013131 Mannitol dehydrogenase, N-terminal YPC_4095 IPR013118 Mannitol dehydrogenase, C-terminal YPC_4095 IPR023668 Altronate oxidoreductase YPC_4095 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPC_4095 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPC_4096 IPR013974 SAF domain YPC_4096 IPR007392 D-galactarate/Altronate dehydratase, C-terminal YPC_4097 IPR019629 Uncharacterised protein family HI1736/YgjV YPC_4097 IPR026267 Inner membrane protein YgjV YPC_4098 IPR002686 Transposase IS200-like YPC_4098 IPR036515 Transposase IS200-like superfamily YPC_4100 IPR001796 Dihydrofolate reductase domain YPC_4100 IPR017925 Dihydrofolate reductase conserved site YPC_4100 IPR024072 Dihydrofolate reductase-like domain superfamily YPC_4100 IPR012259 Dihydrofolate reductase YPC_4101 IPR020914 Uncharacterised protein family UPF0442 YPC_4101 IPR024528 Threonine/Serine exporter, ThrE YPC_4102 IPR010619 Putative threonine/serine exporter YPC_4103 IPR004778 Homoserine/Threonine efflux protein YPC_4103 IPR001123 Amino acid exporter protein, LeuE-type YPC_4104 IPR011761 ATP-grasp fold YPC_4104 IPR016185 Pre-ATP-grasp domain superfamily YPC_4104 IPR006275 Carbamoyl-phosphate synthase, large subunit YPC_4104 IPR011607 Methylglyoxal synthase-like domain YPC_4104 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily YPC_4104 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain YPC_4104 IPR036914 Methylglyoxal synthase-like domain superfamily YPC_4104 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain YPC_4104 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain YPC_4104 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain YPC_4105 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain YPC_4105 IPR029062 Class I glutamine amidotransferase-like YPC_4105 IPR017926 Glutamine amidotransferase YPC_4105 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily YPC_4105 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain YPC_4105 IPR006274 Carbamoyl-phosphate synthase, small subunit YPC_4106 IPR022663 Dihydrodipicolinate reductase, C-terminal YPC_4106 IPR000846 Dihydrodipicolinate reductase, N-terminal YPC_4106 IPR022664 Dihydrodipicolinate reductase, conserved site YPC_4106 IPR023940 Dihydrodipicolinate reductase YPC_4106 IPR036291 NAD(P)-binding domain superfamily YPC_4107 IPR002686 Transposase IS200-like YPC_4107 IPR036515 Transposase IS200-like superfamily YPC_4109 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YPC_4112 IPR002301 Isoleucine-tRNA ligase YPC_4112 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPC_4112 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPC_4112 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain YPC_4112 IPR023585 Isoleucine-tRNA ligase, type 1 YPC_4112 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPC_4112 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPC_4112 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPC_4112 IPR010663 Zinc finger, FPG/IleRS-type YPC_4112 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_4113 IPR015864 FAD synthetase YPC_4113 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_4113 IPR023468 Riboflavin kinase YPC_4113 IPR002606 Riboflavin kinase, bacterial YPC_4113 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic YPC_4113 IPR023465 Riboflavin kinase domain superfamily YPC_4114 IPR036510 Ribosomal protein S20 superfamily YPC_4114 IPR002583 Ribosomal protein S20 YPC_4115 IPR036390 Winged helix DNA-binding domain superfamily YPC_4115 IPR000847 Transcription regulator HTH, LysR YPC_4115 IPR005119 LysR, substrate-binding YPC_4115 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_4116 IPR004670 Na+/H+ antiporter NhaA YPC_4116 IPR023171 Na/H antiporter domain superfamily YPC_4117 IPR001623 DnaJ domain YPC_4117 IPR008971 HSP40/DnaJ peptide-binding YPC_4117 IPR012724 Chaperone DnaJ YPC_4117 IPR036869 Chaperone J-domain superfamily YPC_4117 IPR002939 Chaperone DnaJ, C-terminal YPC_4117 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily YPC_4117 IPR001305 Heat shock protein DnaJ, cysteine-rich domain YPC_4117 IPR018253 DnaJ domain, conserved site YPC_4118 IPR013126 Heat shock protein 70 family YPC_4118 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily YPC_4118 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily YPC_4118 IPR012725 Chaperone DnaK YPC_4118 IPR018181 Heat shock protein 70, conserved site YPC_4119 IPR000791 Acetate transporter GPR1/FUN34/SatP family YPC_4121 IPR020846 Major facilitator superfamily domain YPC_4121 IPR036259 MFS transporter superfamily YPC_4121 IPR011701 Major facilitator superfamily YPC_4121 IPR005829 Sugar transporter, conserved site YPC_4122 IPR036425 MoaB/Mog-like domain superfamily YPC_4122 IPR008284 Molybdenum cofactor biosynthesis, conserved site YPC_4122 IPR001453 MoaB/Mog domain YPC_4124 IPR004730 Transaldolase type 1 YPC_4124 IPR013785 Aldolase-type TIM barrel YPC_4124 IPR001585 Transaldolase/Fructose-6-phosphate aldolase YPC_4124 IPR018225 Transaldolase, active site YPC_4126 IPR005583 Peroxide stress protein YaaA YPC_4127 IPR004450 Threonine synthase-like YPC_4127 IPR001926 Pyridoxal-phosphate dependent enzyme YPC_4127 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPC_4127 IPR029144 Threonine synthase, N-terminal YPC_4127 IPR037158 Threonine synthase, N-terminal domain superfamily YPC_4127 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPC_4128 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPC_4128 IPR006203 GHMP kinase, ATP-binding, conserved site YPC_4128 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_4128 IPR013750 GHMP kinase, C-terminal domain YPC_4128 IPR036554 GHMP kinase, C-terminal domain superfamily YPC_4128 IPR006204 GHMP kinase N-terminal domain YPC_4128 IPR000870 Homoserine kinase YPC_4132 IPR039420 Transcriptional regulatory protein WalR-like YPC_4132 IPR001789 Signal transduction response regulator, receiver domain YPC_4132 IPR016032 Signal transduction response regulator, C-terminal effector YPC_4132 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_4132 IPR001867 OmpR/PhoB-type DNA-binding domain YPC_4132 IPR011006 CheY-like superfamily YPC_4133 IPR010292 Uncharacterised protein family CreA YPC_4134 IPR020449 Transcription regulator HTH, AraC- type YPC_4134 IPR011256 Regulatory factor, effector binding domain superfamily YPC_4134 IPR018062 HTH domain AraC-type, conserved site YPC_4134 IPR018060 DNA binding HTH domain, AraC-type YPC_4134 IPR009057 Homeobox-like domain superfamily YPC_4134 IPR029442 GyrI-like small molecule binding domain YPC_4134 IPR010499 Bacterial transcription activator, effector binding YPC_4135 IPR023086 Phosphoglycerate mutase, GpmB, probable YPC_4135 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site YPC_4135 IPR029033 Histidine phosphatase superfamily YPC_4135 IPR013078 Histidine phosphatase superfamily, clade-1 YPC_4136 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 YPC_4136 IPR002786 Inosine/xanthosine triphosphatase YPC_4136 IPR029001 Inosine triphosphate pyrophosphatase-like YPC_4137 IPR010921 Trp repressor/replication initiator YPC_4137 IPR013335 Trp repressor, bacterial YPC_4137 IPR000831 Trp repressor YPC_4137 IPR038116 TrpR-like superfamily YPC_4138 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily YPC_4138 IPR012289 Lytic transglycosylase, superhelical linker YPC_4138 IPR008939 Lytic transglycosylase, superhelical U-shaped YPC_4138 IPR000189 Prokaryotic transglycosylase, active site YPC_4138 IPR008258 Transglycosylase SLT domain 1 YPC_4138 IPR023346 Lysozyme-like domain superfamily YPC_4139 IPR004014 Cation-transporting P-type ATPase, N-terminal YPC_4139 IPR001757 P-type ATPase YPC_4139 IPR023299 P-type ATPase, cytoplasmic domain N YPC_4139 IPR018303 P-type ATPase, phosphorylation site YPC_4139 IPR023298 P-type ATPase, transmembrane domain superfamily YPC_4139 IPR008250 P-type ATPase, A domain superfamily YPC_4139 IPR036412 HAD-like superfamily YPC_4139 IPR023214 HAD superfamily YPC_4139 IPR006068 Cation-transporting P-type ATPase, C-terminal YPC_4141 IPR029787 Nucleotide cyclase YPC_4141 IPR003660 HAMP domain YPC_4141 IPR000160 GGDEF domain YPC_4141 IPR033417 Periplasmic sensor domain CHASE8 YPC_4142 IPR006664 Outer membrane protein, bacterial YPC_4142 IPR006665 OmpA-like domain YPC_4142 IPR036737 OmpA-like domain superfamily YPC_4143 IPR022374 Energy-dependent translational throttle protein EttA YPC_4143 IPR003593 AAA+ ATPase domain YPC_4143 IPR032781 ABC-transporter extension domain YPC_4143 IPR003439 ABC transporter-like YPC_4143 IPR017871 ABC transporter, conserved site YPC_4143 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4144 IPR032781 ABC-transporter extension domain YPC_4144 IPR003593 AAA+ ATPase domain YPC_4144 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4144 IPR017871 ABC transporter, conserved site YPC_4144 IPR022374 Energy-dependent translational throttle protein EttA YPC_4144 IPR003439 ABC transporter-like YPC_4146 IPR006417 Nicotinamide-nucleotide adenylyltransferase YPC_4146 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4146 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_4146 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_4146 IPR004821 Cytidyltransferase-like domain YPC_4146 IPR001387 Cro/C1-type helix-turn-helix domain YPC_4146 IPR041749 NadR, nicotinamide/nicotinate mononucleotide adenylyltransferase domain YPC_4146 IPR016429 NAD biosynthesis/regulator protein NadR YPC_4146 IPR038727 NadR/Ttd14, AAA domain YPC_4147 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_4147 IPR041166 LapB, rubredoxin metal binding domain YPC_4147 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPC_4147 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain YPC_4147 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4147 IPR004504 DNA repair protein RadA YPC_4147 IPR003593 AAA+ ATPase domain YPC_4148 IPR023190 Phosphoserine phosphatase, domain 2 YPC_4148 IPR041449 Phosphoserine phosphatase, N-terminal YPC_4148 IPR023214 HAD superfamily YPC_4148 IPR036412 HAD-like superfamily YPC_4150 IPR019305 Uncharacterised protein family Smp YPC_4151 IPR035994 Nucleoside phosphorylase superfamily YPC_4151 IPR018016 Nucleoside phosphorylase, conserved site YPC_4151 IPR004402 Purine nucleoside phosphorylase DeoD-type YPC_4151 IPR000845 Nucleoside phosphorylase domain YPC_4152 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPC_4152 IPR010045 Phosphopentomutase YPC_4152 IPR024052 Phosphopentomutase DeoB cap domain superfamily YPC_4152 IPR006124 Metalloenzyme YPC_4155 IPR023649 Deoxyribose-phosphate aldolase type II YPC_4155 IPR002915 DeoC/FbaB/ lacD aldolase YPC_4155 IPR011343 Deoxyribose-phosphate aldolase YPC_4155 IPR013785 Aldolase-type TIM barrel YPC_4157 IPR002668 Concentrative nucleoside transporter N-terminal domain YPC_4157 IPR011657 Concentrative nucleoside transporter C-terminal domain YPC_4157 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial YPC_4157 IPR008276 Concentrative nucleoside transporter YPC_4157 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain YPC_4161 IPR002641 Patatin-like phospholipase domain YPC_4161 IPR037483 YjjU-like YPC_4161 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPC_4162 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPC_4162 IPR037483 YjjU-like YPC_4162 IPR002641 Patatin-like phospholipase domain YPC_4163 IPR009760 Protein of unknown function DUF1328 YPC_4164 IPR007055 BON domain YPC_4164 IPR014004 Transport-associated and nodulation domain, bacteria YPC_4165 IPR000795 Transcription factor, GTP-binding domain YPC_4165 IPR041732 Peptide chain release factor 3, GTP-binding domain YPC_4165 IPR035647 EF-G domain III/V-like YPC_4165 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily YPC_4165 IPR004161 Translation elongation factor EFTu-like, domain 2 YPC_4165 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4165 IPR009000 Translation protein, beta-barrel domain superfamily YPC_4165 IPR005225 Small GTP-binding protein domain YPC_4165 IPR031157 Tr-type G domain, conserved site YPC_4165 IPR004548 Peptide chain release factor 3 YPC_4165 IPR032090 Peptide chain release factor 3, C-terminal YPC_4166 IPR016181 Acyl-CoA N-acyltransferase YPC_4166 IPR006464 N-acetyltransferase RimI/Ard1 YPC_4166 IPR000182 GNAT domain YPC_4167 IPR018382 DNA polymerase III, psi subunit, subgroup YPC_4167 IPR036654 DNA polymerase III, psi subunit superfamily YPC_4167 IPR004615 DNA polymerase III, psi subunit YPC_4172 IPR009885 Protein of unknown function DUF1435 YPC_4173 IPR039435 Diguanylate cyclase DosC, globin sensor domain YPC_4173 IPR000160 GGDEF domain YPC_4173 IPR012292 Globin/Protoglobin YPC_4173 IPR009050 Globin-like superfamily YPC_4173 IPR029787 Nucleotide cyclase YPC_4175 IPR012334 Pectin lyase fold YPC_4175 IPR000070 Pectinesterase, catalytic YPC_4175 IPR011050 Pectin lyase fold/virulence factor YPC_4175 IPR033131 Pectinesterase, Asp active site YPC_4179 IPR001036 Acriflavin resistance protein YPC_4179 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPC_4180 IPR006143 RND efflux pump, membrane fusion protein YPC_4180 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPC_4184 IPR002201 Glycosyl transferase, family 9 YPC_4184 IPR011916 Lipopolysaccharide heptosyltransferase III, putative YPC_4186 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPC_4186 IPR000577 Carbohydrate kinase, FGGY YPC_4186 IPR033676 Autoinducer-2 kinase YPC_4186 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPC_4187 IPR037171 NagB/RpiA transferase-like YPC_4187 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_4187 IPR012318 Crp-type HTH domain YPC_4187 IPR007324 Sugar-binding domain, putative YPC_4188 IPR012318 Crp-type HTH domain YPC_4188 IPR037171 NagB/RpiA transferase-like YPC_4188 IPR007324 Sugar-binding domain, putative YPC_4188 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_4190 IPR030281 Autoinducer 2 import ATP-binding protein LsrA YPC_4190 IPR017871 ABC transporter, conserved site YPC_4190 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4190 IPR003439 ABC transporter-like YPC_4190 IPR003593 AAA+ ATPase domain YPC_4191 IPR001851 ABC transporter, permease YPC_4194 IPR028082 Periplasmic binding protein-like I YPC_4194 IPR030159 Autoinducer 2 ABC transporter, substrate-binding protein LsrB YPC_4194 IPR025997 Periplasmic binding protein YPC_4195 IPR041720 Aldolase FbaB-like, archaeal-type YPC_4195 IPR013785 Aldolase-type TIM barrel YPC_4195 IPR002915 DeoC/FbaB/ lacD aldolase YPC_4195 IPR033673 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase YPC_4196 IPR033672 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase YPC_4196 IPR011008 Dimeric alpha-beta barrel YPC_4196 IPR007138 Antibiotic biosynthesis monooxygenase domain YPC_4198 IPR019637 Protein of unknown function DUF2501 YPC_4199 IPR000032 Phosphocarrier protein HPr-like YPC_4199 IPR035895 HPr-like superfamily YPC_4199 IPR036637 Phosphohistidine domain superfamily YPC_4199 IPR040442 Pyruvate kinase-like domain superfamily YPC_4199 IPR016152 Phosphotransferase/anion transporter YPC_4199 IPR006318 Phosphotransferase system, enzyme I-like YPC_4199 IPR002178 PTS EIIA type-2 domain YPC_4199 IPR008731 Phosphotransferase system, enzyme I N-terminal YPC_4199 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPC_4199 IPR036618 PtsI, HPr-binding domain superfamily YPC_4199 IPR000121 PEP-utilising enzyme, C-terminal YPC_4199 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPC_4199 IPR008279 PEP-utilising enzyme, mobile domain YPC_4199 IPR023151 PEP-utilising enzyme, conserved site YPC_4199 IPR018274 PEP-utilising enzyme, active site YPC_4200 IPR013014 Phosphotransferase system, EIIC component, type 2 YPC_4200 IPR006327 Phosphotransferase system, fructose IIC component YPC_4201 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPC_4201 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPC_4201 IPR036095 PTS system IIB component-like superfamily YPC_4201 IPR013011 Phosphotransferase system, EIIB component, type 2 YPC_4202 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPC_4202 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPC_4202 IPR013011 Phosphotransferase system, EIIB component, type 2 YPC_4202 IPR036095 PTS system IIB component-like superfamily YPC_4203 IPR018062 HTH domain AraC-type, conserved site YPC_4203 IPR020449 Transcription regulator HTH, AraC- type YPC_4203 IPR018060 DNA binding HTH domain, AraC-type YPC_4203 IPR009057 Homeobox-like domain superfamily YPC_4205 IPR010295 Protein of unknown function DUF898 YPC_4214 IPR002941 DNA methylase N-4/N-6 YPC_4214 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site YPC_4214 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_4215 IPR002514 Transposase IS3/IS911family YPC_4215 IPR009057 Homeobox-like domain superfamily YPC_4216 IPR036397 Ribonuclease H superfamily YPC_4216 IPR025948 HTH-like domain YPC_4216 IPR001584 Integrase, catalytic core YPC_4216 IPR012337 Ribonuclease H-like superfamily YPC_4219 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4219 IPR011704 ATPase, dynein-related, AAA domain YPC_4219 IPR021961 Protein of unknown function DUF3578 YPC_4219 IPR003593 AAA+ ATPase domain YPC_4220 IPR017894 HTH domain, IS21 transposase-type YPC_4220 IPR001584 Integrase, catalytic core YPC_4220 IPR006120 Resolvase, HTH domain YPC_4220 IPR012337 Ribonuclease H-like superfamily YPC_4220 IPR036397 Ribonuclease H superfamily YPC_4221 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4221 IPR003593 AAA+ ATPase domain YPC_4221 IPR002611 IstB-like ATP-binding protein YPC_4221 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_4221 IPR001270 ClpA/B family YPC_4222 IPR003732 D-aminoacyl-tRNA deacylase DTD YPC_4222 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily YPC_4223 IPR017039 Virulence factor BrkB YPC_4223 IPR023679 Uncharacterised protein family UPF0761, bacterial YPC_4224 IPR041492 Haloacid dehalogenase-like hydrolase YPC_4224 IPR023214 HAD superfamily YPC_4224 IPR036412 HAD-like superfamily YPC_4224 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPC_4224 IPR006439 HAD hydrolase, subfamily IA YPC_4226 IPR027302 Glutamine synthetase, N-terminal conserved site YPC_4226 IPR001637 Glutamine synthetase class-I, adenylation site YPC_4226 IPR004809 Glutamine synthetase type I YPC_4226 IPR027303 Glutamine synthetase, glycine-rich site YPC_4226 IPR008146 Glutamine synthetase, catalytic domain YPC_4226 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YPC_4226 IPR036651 Glutamine synthetase, N-terminal domain superfamily YPC_4226 IPR008147 Glutamine synthetase, beta-Grasp domain YPC_4227 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_4227 IPR013767 PAS fold YPC_4227 IPR035965 PAS domain superfamily YPC_4227 IPR000014 PAS domain YPC_4227 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_4227 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_4227 IPR005467 Histidine kinase domain YPC_4227 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_4227 IPR003594 Histidine kinase/HSP90-like ATPase YPC_4228 IPR010114 DNA-binding transcriptional regulator NtrC YPC_4228 IPR025944 Sigma-54 interaction domain, conserved site YPC_4228 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPC_4228 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPC_4228 IPR002078 RNA polymerase sigma factor 54 interaction domain YPC_4228 IPR001789 Signal transduction response regulator, receiver domain YPC_4228 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4228 IPR002197 DNA binding HTH domain, Fis-type YPC_4228 IPR009057 Homeobox-like domain superfamily YPC_4228 IPR011006 CheY-like superfamily YPC_4228 IPR003593 AAA+ ATPase domain YPC_4229 IPR023404 Radical SAM, alpha/beta horseshoe YPC_4229 IPR007197 Radical SAM YPC_4229 IPR034505 Anaerobic coproporphyrinogen-III oxidase YPC_4229 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN YPC_4229 IPR006638 Elp3/MiaB/NifB YPC_4229 IPR010723 HemN, C-terminal YPC_4230 IPR007336 Der GTPase activator YPC_4232 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4232 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC YPC_4232 IPR030393 EngB-type guanine nucleotide-binding (G) domain YPC_4232 IPR006073 GTP binding domain YPC_4234 IPR002686 Transposase IS200-like YPC_4234 IPR036515 Transposase IS200-like superfamily YPC_4238 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPC_4238 IPR019760 DNA-directed DNA polymerase, family A, conserved site YPC_4238 IPR029060 PIN-like domain superfamily YPC_4238 IPR012337 Ribonuclease H-like superfamily YPC_4238 IPR008918 Helix-hairpin-helix motif, class 2 YPC_4238 IPR001098 DNA-directed DNA polymerase, family A, palm domain YPC_4238 IPR020045 DNA polymerase I-like, H3TH domain YPC_4238 IPR018320 DNA polymerase 1 YPC_4238 IPR002298 DNA polymerase A YPC_4238 IPR002421 5'-3' exonuclease, N-terminal YPC_4238 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPC_4238 IPR036397 Ribonuclease H superfamily YPC_4238 IPR002562 3'-5' exonuclease domain YPC_4239 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL YPC_4239 IPR017937 Thioredoxin, conserved site YPC_4239 IPR001853 DSBA-like thioredoxin domain YPC_4239 IPR013766 Thioredoxin domain YPC_4239 IPR036249 Thioredoxin-like superfamily YPC_4240 IPR002575 Aminoglycoside phosphotransferase YPC_4240 IPR011009 Protein kinase-like domain superfamily YPC_4240 IPR032882 SrkA/RdoA protein kinase YPC_4241 IPR038134 YihD-like superfamily YPC_4241 IPR009383 Protein of unknown function DUF1040 YPC_4242 IPR029044 Nucleotide-diphospho-sugar transferases YPC_4242 IPR025877 MobA-like NTP transferase YPC_4242 IPR013482 Molybdenum cofactor guanylyltransferase YPC_4243 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4243 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain YPC_4244 IPR001207 Transposase, mutator type YPC_4251 IPR036397 Ribonuclease H superfamily YPC_4251 IPR012337 Ribonuclease H-like superfamily YPC_4251 IPR001584 Integrase, catalytic core YPC_4251 IPR006120 Resolvase, HTH domain YPC_4251 IPR017894 HTH domain, IS21 transposase-type YPC_4252 IPR001270 ClpA/B family YPC_4252 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4252 IPR003593 AAA+ ATPase domain YPC_4252 IPR002611 IstB-like ATP-binding protein YPC_4252 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_4253 IPR016639 Glutathione S-transferase Omega/GSH YPC_4253 IPR010987 Glutathione S-transferase, C-terminal-like YPC_4253 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPC_4253 IPR040079 Glutathione Transferase family YPC_4253 IPR004045 Glutathione S-transferase, N-terminal YPC_4253 IPR036249 Thioredoxin-like superfamily YPC_4254 IPR036390 Winged helix DNA-binding domain superfamily YPC_4254 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_4254 IPR005119 LysR, substrate-binding YPC_4254 IPR000847 Transcription regulator HTH, LysR YPC_4255 IPR014710 RmlC-like jelly roll fold YPC_4255 IPR011051 RmlC-like cupin domain superfamily YPC_4255 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain YPC_4255 IPR012093 Pirin YPC_4255 IPR003829 Pirin, N-terminal domain YPC_4258 IPR014777 Tetrapyrrole methylase, subdomain 1 YPC_4258 IPR000878 Tetrapyrrole methylase YPC_4258 IPR008189 rRNA small subunit methyltransferase I YPC_4258 IPR035996 Tetrapyrrole methylase superfamily YPC_4258 IPR018063 SAM-dependent methyltransferase RsmI, conserved site YPC_4258 IPR014776 Tetrapyrrole methylase, subdomain 2 YPC_4259 IPR028082 Periplasmic binding protein-like I YPC_4259 IPR007443 Penicillin-binding protein activator LpoA YPC_4259 IPR011990 Tetratricopeptide-like helical domain superfamily YPC_4260 IPR011856 tRNA endonuclease-like domain superfamily YPC_4260 IPR011335 Restriction endonuclease type II-like YPC_4260 IPR003509 Uncharacterised protein family UPF0102 YPC_4261 IPR001347 Sugar isomerase (SIS) YPC_4261 IPR035461 GmhA/DiaA YPC_4261 IPR023070 DnaA initiator-associating protein YPC_4262 IPR014004 Transport-associated and nodulation domain, bacteria YPC_4262 IPR007055 BON domain YPC_4263 IPR023346 Lysozyme-like domain superfamily YPC_4263 IPR036950 Penicillin binding protein transglycosylase domain YPC_4263 IPR011812 Biosynthetic peptidoglycan transglycosylase YPC_4263 IPR001264 Glycosyl transferase, family 51 YPC_4264 IPR026041 Glyoxalase ElbB YPC_4264 IPR029062 Class I glutamine amidotransferase-like YPC_4267 IPR040642 Histidine kinase receptor ArcB, transmembrane domain YPC_4267 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB YPC_4267 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily YPC_4267 IPR011006 CheY-like superfamily YPC_4267 IPR003594 Histidine kinase/HSP90-like ATPase YPC_4267 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_4267 IPR001789 Signal transduction response regulator, receiver domain YPC_4267 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_4267 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_4267 IPR005467 Histidine kinase domain YPC_4267 IPR036641 HPT domain superfamily YPC_4267 IPR000014 PAS domain YPC_4267 IPR000700 PAS-associated, C-terminal YPC_4267 IPR035965 PAS domain superfamily YPC_4267 IPR013767 PAS fold YPC_4267 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_4267 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPC_4269 IPR023404 Radical SAM, alpha/beta horseshoe YPC_4269 IPR005911 Protein YhcC-like YPC_4269 IPR039661 ELP3/YhcC YPC_4269 IPR006638 Elp3/MiaB/NifB YPC_4269 IPR032432 Radical SAM, C-terminal extension YPC_4269 IPR007197 Radical SAM YPC_4270 IPR017932 Glutamine amidotransferase type 2 domain YPC_4270 IPR002932 Glutamate synthase domain YPC_4270 IPR013785 Aldolase-type TIM barrel YPC_4270 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily YPC_4270 IPR006982 Glutamate synthase, central-N YPC_4270 IPR029055 Nucleophile aminohydrolases, N-terminal YPC_4270 IPR002489 Glutamate synthase, alpha subunit, C-terminal YPC_4271 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_4271 IPR028261 Dihydroprymidine dehydrogenase domain II YPC_4271 IPR023753 FAD/NAD(P)-binding domain YPC_4271 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 YPC_4271 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_4271 IPR009051 Alpha-helical ferredoxin YPC_4273 IPR007481 Stringent starvation protein B YPC_4273 IPR036760 SspB-like superfamily YPC_4274 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPC_4274 IPR010987 Glutathione S-transferase, C-terminal-like YPC_4274 IPR036249 Thioredoxin-like superfamily YPC_4274 IPR034341 Stringent starvation protein A, N-terminal YPC_4274 IPR004046 Glutathione S-transferase, C-terminal YPC_4274 IPR040079 Glutathione Transferase family YPC_4274 IPR004045 Glutathione S-transferase, N-terminal YPC_4275 IPR000754 Ribosomal protein S9 YPC_4275 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_4275 IPR020574 Ribosomal protein S9, conserved site YPC_4275 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPC_4275 IPR023035 Ribosomal protein S9, bacterial/plastid YPC_4276 IPR005823 Ribosomal protein L13, bacterial-type YPC_4276 IPR023563 Ribosomal protein L13, conserved site YPC_4276 IPR036899 Ribosomal protein L13 superfamily YPC_4276 IPR005822 Ribosomal protein L13 YPC_4277 IPR005654 ATPase, AFG1-like YPC_4277 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4277 IPR030870 Cell division protein ZapE YPC_4278 IPR009386 Protein of unknown function DUF1043 YPC_4279 IPR001478 PDZ domain YPC_4279 IPR011782 Peptidase S1C, Do YPC_4279 IPR009003 Peptidase S1, PA clan YPC_4279 IPR036034 PDZ superfamily YPC_4279 IPR001940 Peptidase S1C YPC_4280 IPR002686 Transposase IS200-like YPC_4280 IPR036515 Transposase IS200-like superfamily YPC_4282 IPR001478 PDZ domain YPC_4282 IPR036034 PDZ superfamily YPC_4282 IPR011783 Peptidase S1C, DegS YPC_4282 IPR009003 Peptidase S1, PA clan YPC_4282 IPR001940 Peptidase S1C YPC_4283 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YPC_4283 IPR001986 Enolpyruvate transferase domain YPC_4283 IPR036968 Enolpyruvate transferase domain superfamily YPC_4283 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YPC_4284 IPR002634 BolA protein YPC_4284 IPR036065 BolA-like superfamily YPC_4285 IPR002645 STAS domain YPC_4285 IPR036513 STAS domain superfamily YPC_4286 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC YPC_4286 IPR042245 Tgt2/MlaC superfamily YPC_4287 IPR003399 Mce/MlaD YPC_4287 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD YPC_4288 IPR003453 ABC transport permease subunit MlaE, Proteobacteria YPC_4288 IPR030802 ABC transporter permease MalE YPC_4289 IPR003439 ABC transporter-like YPC_4289 IPR017871 ABC transporter, conserved site YPC_4289 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl YPC_4289 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4289 IPR003593 AAA+ ATPase domain YPC_4290 IPR004837 Sodium/calcium exchanger membrane region YPC_4290 IPR004481 Sodium/potassium/calcium exchanger YPC_4291 IPR001347 Sugar isomerase (SIS) YPC_4291 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type YPC_4291 IPR000644 CBS domain YPC_4291 IPR035474 KpsF-like, SIS domain YPC_4292 IPR023214 HAD superfamily YPC_4292 IPR010023 KdsC family YPC_4292 IPR036412 HAD-like superfamily YPC_4293 IPR026265 Lipopolysaccharide export system protein LptC YPC_4293 IPR010664 Lipopolysaccharide assembly, LptC-related YPC_4294 IPR005653 Organic solvent tolerance-like, N-terminal YPC_4294 IPR014340 Lipopolysaccharide export system protein LptA YPC_4295 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4295 IPR003593 AAA+ ATPase domain YPC_4295 IPR003439 ABC transporter-like YPC_4295 IPR017871 ABC transporter, conserved site YPC_4295 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal YPC_4295 IPR030921 LPS export ABC transporter, ATP-binding protein LptB YPC_4296 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily YPC_4296 IPR007634 RNA polymerase sigma factor 54, DNA-binding YPC_4296 IPR007046 RNA polymerase sigma factor 54, core-binding domain YPC_4296 IPR000394 RNA polymerase sigma factor 54 YPC_4297 IPR036567 Ribosome hibernation promotion factor-like YPC_4297 IPR003489 Ribosome hibernation promoting factor/RaiA YPC_4298 IPR003489 Ribosome hibernation promoting factor/RaiA YPC_4298 IPR036567 Ribosome hibernation promotion factor-like YPC_4299 IPR016152 Phosphotransferase/anion transporter YPC_4299 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN YPC_4299 IPR002178 PTS EIIA type-2 domain YPC_4300 IPR005337 RapZ-like family YPC_4300 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4301 IPR000032 Phosphocarrier protein HPr-like YPC_4301 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPC_4301 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YPC_4301 IPR035895 HPr-like superfamily YPC_4302 IPR006130 Aspartate/ornithine carbamoyltransferase YPC_4302 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily YPC_4302 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YPC_4302 IPR002082 Aspartate carbamoyltransferase YPC_4302 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YPC_4303 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal YPC_4303 IPR002801 Aspartate transcarbamylase regulatory subunit YPC_4303 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily YPC_4303 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal YPC_4303 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily YPC_4304 IPR006056 RidA family YPC_4304 IPR019897 RidA, conserved site YPC_4304 IPR035959 RutC-like superfamily YPC_4304 IPR006175 YjgF/YER057c/UK114 family YPC_4306 IPR000843 LacI-type HTH domain YPC_4306 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_4306 IPR028082 Periplasmic binding protein-like I YPC_4306 IPR012771 Trehalose operon repressor YPC_4307 IPR013013 Phosphotransferase system, EIIC component, type 1 YPC_4307 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component YPC_4307 IPR011296 Phosphotransferase system, trehalose-specific IIBC component YPC_4307 IPR003352 Phosphotransferase system, EIIC YPC_4307 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPC_4307 IPR036878 Glucose permease domain IIB YPC_4307 IPR001996 Phosphotransferase system, IIB component, type 1 YPC_4308 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPC_4308 IPR013780 Glycosyl hydrolase, all-beta YPC_4308 IPR017853 Glycoside hydrolase superfamily YPC_4308 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) YPC_4308 IPR012769 Trehalose-6-phosphate hydrolase YPC_4309 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily YPC_4309 IPR028625 Regulator of nucleoside diphosphate kinase YPC_4309 IPR023459 Transcription elongation factor GreA/GreB family YPC_4309 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain YPC_4309 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPC_4311 IPR010980 Cytochrome c/b562 YPC_4311 IPR009155 Cytochrome b562 YPC_4313 IPR036059 Metalloprotease TldD/PmbA superfamily YPC_4313 IPR035068 Metalloprotease TldD/PmbA, N-terminal YPC_4313 IPR002510 Metalloprotease TldD/PmbA YPC_4314 IPR006839 Ribosome-associated, YjgA YPC_4314 IPR023153 PSPTO4464-like domain superfamily YPC_4315 IPR035905 Barstar-like superfamily YPC_4315 IPR000468 Barstar (barnase inhibitor) YPC_4319 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB YPC_4319 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein YPC_4320 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA YPC_4320 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPC_4320 IPR006143 RND efflux pump, membrane fusion protein YPC_4321 IPR012451 Protein of unknown function DUF1656 YPC_4323 IPR000847 Transcription regulator HTH, LysR YPC_4323 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_4323 IPR005119 LysR, substrate-binding YPC_4323 IPR036390 Winged helix DNA-binding domain superfamily YPC_4324 IPR000847 Transcription regulator HTH, LysR YPC_4324 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_4324 IPR036390 Winged helix DNA-binding domain superfamily YPC_4324 IPR005119 LysR, substrate-binding YPC_4327 IPR041079 Neuraminidase-like domain YPC_4327 IPR040840 Tc toxin complex TcA, C-terminal TcB-binding domain YPC_4328 IPR022044 Insecticide toxin TcdB middle/C-terminal YPC_4328 IPR022045 Insecticide toxin TcdB middle/N-terminal YPC_4328 IPR003284 Salmonella virulence plasmid 65kDa B protein YPC_4332 IPR041508 Toxin complex C-like repeat YPC_4332 IPR011324 Cytotoxic necrotizing factor-like, catalytic YPC_4332 IPR037040 Cytotoxic necrotizing factor, Rho-activating domain superfamily YPC_4332 IPR008430 Cytotoxic necrotizing factor, Rho-activating domain YPC_4332 IPR022385 Rhs repeat-associated core YPC_4333 IPR022385 Rhs repeat-associated core YPC_4333 IPR025968 YwqJ-like deaminase YPC_4333 IPR041508 Toxin complex C-like repeat YPC_4335 IPR035068 Metalloprotease TldD/PmbA, N-terminal YPC_4335 IPR002510 Metalloprotease TldD/PmbA YPC_4335 IPR025502 TldD YPC_4335 IPR036059 Metalloprotease TldD/PmbA superfamily YPC_4336 IPR036526 Carbon-nitrogen hydrolase superfamily YPC_4336 IPR001110 Uncharacterised protein family UPF0012, conserved site YPC_4336 IPR003010 Carbon-nitrogen hydrolase YPC_4337 IPR032712 AsmA-like, C-terminal YPC_4337 IPR025263 Domain of unknown function DUF3971 YPC_4337 IPR011836 Conserved hypothetical protein CHP02099 YPC_4338 IPR012340 Nucleic acid-binding, OB-fold YPC_4338 IPR003029 S1 domain YPC_4338 IPR004659 Ribonuclease E/G YPC_4338 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G YPC_4338 IPR022967 RNA-binding domain, S1 YPC_4339 IPR029001 Inosine triphosphate pyrophosphatase-like YPC_4339 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein YPC_4340 IPR007227 Cell shape-determining protein MreD YPC_4340 IPR026034 Cell shape-determining protein MreD, proteobacterial type YPC_4341 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 YPC_4341 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 YPC_4341 IPR007221 Rod shape-determining protein MreC YPC_4342 IPR004753 Cell shape determining protein MreB YPC_4343 IPR029787 Nucleotide cyclase YPC_4343 IPR001633 EAL domain YPC_4343 IPR000160 GGDEF domain YPC_4343 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 YPC_4343 IPR035919 EAL domain superfamily YPC_4344 IPR020843 Polyketide synthase, enoylreductase domain YPC_4344 IPR013154 Alcohol dehydrogenase, N-terminal YPC_4344 IPR036291 NAD(P)-binding domain superfamily YPC_4344 IPR014188 Acrylyl-CoA reductase AcuI YPC_4344 IPR011032 GroES-like superfamily YPC_4344 IPR013149 Alcohol dehydrogenase, C-terminal YPC_4345 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP YPC_4345 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily YPC_4345 IPR000572 Oxidoreductase, molybdopterin-binding domain YPC_4346 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ YPC_4346 IPR013130 Ferric reductase transmembrane component-like domain YPC_4347 IPR001874 Dehydroquinase, class II YPC_4347 IPR036441 Dehydroquinase, class II superfamily YPC_4347 IPR018509 Dehydroquinase, class II, conserved site YPC_4348 IPR000089 Biotin/lipoyl attachment YPC_4348 IPR001882 Biotin-binding site YPC_4348 IPR001249 Acetyl-CoA biotin carboxyl carrier YPC_4348 IPR011053 Single hybrid motif YPC_4349 IPR011054 Rudiment single hybrid motif YPC_4349 IPR005481 Biotin carboxylase-like, N-terminal domain YPC_4349 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain YPC_4349 IPR005482 Biotin carboxylase, C-terminal YPC_4349 IPR011764 Biotin carboxylation domain YPC_4349 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase YPC_4349 IPR011761 ATP-grasp fold YPC_4349 IPR013815 ATP-grasp fold, subdomain 1 YPC_4349 IPR016185 Pre-ATP-grasp domain superfamily YPC_4352 IPR010398 Protein of unknown function DUF997 YPC_4353 IPR011849 Sodium/pantothenate symporter YPC_4353 IPR038377 Sodium/glucose symporter superfamily YPC_4353 IPR001734 Sodium/solute symporter YPC_4353 IPR018212 Sodium/solute symporter, conserved site YPC_4354 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_4354 IPR004498 Ribosomal protein L11 methyltransferase YPC_4356 IPR032887 tRNA-dihydrouridine synthase B YPC_4356 IPR035587 DUS-like, FMN-binding domain YPC_4356 IPR013785 Aldolase-type TIM barrel YPC_4356 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 YPC_4356 IPR001269 tRNA-dihydrouridine synthase YPC_4356 IPR018517 tRNA-dihydrouridine synthase, conserved site YPC_4356 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal YPC_4357 IPR005412 DNA-binding protein Fis YPC_4357 IPR009057 Homeobox-like domain superfamily YPC_4357 IPR002197 DNA binding HTH domain, Fis-type YPC_4361 IPR020846 Major facilitator superfamily domain YPC_4361 IPR004736 MFS transporter, metabolite:H symporter YPC_4361 IPR005829 Sugar transporter, conserved site YPC_4361 IPR036259 MFS transporter superfamily YPC_4361 IPR011701 Major facilitator superfamily YPC_4362 IPR029032 AhpD-like YPC_4362 IPR003779 Carboxymuconolactone decarboxylase-like YPC_4362 IPR012788 4-carboxymuconolactone decarboxylase YPC_4363 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site YPC_4363 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPC_4363 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPC_4363 IPR015815 3-hydroxyisobutyrate dehydrogenase-related YPC_4363 IPR036291 NAD(P)-binding domain superfamily YPC_4363 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain YPC_4363 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding YPC_4364 IPR001279 Metallo-beta-lactamase YPC_4364 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPC_4365 IPR008816 Glycine zipper 2TM domain YPC_4367 IPR012340 Nucleic acid-binding, OB-fold YPC_4367 IPR011129 Cold shock domain YPC_4367 IPR019844 Cold-shock (CSD) domain YPC_4367 IPR012156 Cold shock, CspA YPC_4367 IPR002059 Cold-shock protein, DNA-binding YPC_4368 IPR012156 Cold shock, CspA YPC_4368 IPR011129 Cold shock domain YPC_4368 IPR019844 Cold-shock (CSD) domain YPC_4368 IPR002059 Cold-shock protein, DNA-binding YPC_4368 IPR012340 Nucleic acid-binding, OB-fold YPC_4373 IPR010987 Glutathione S-transferase, C-terminal-like YPC_4373 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPC_4373 IPR040079 Glutathione Transferase family YPC_4373 IPR004045 Glutathione S-transferase, N-terminal YPC_4373 IPR036249 Thioredoxin-like superfamily YPC_4374 IPR035474 KpsF-like, SIS domain YPC_4374 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type YPC_4374 IPR000644 CBS domain YPC_4374 IPR001347 Sugar isomerase (SIS) YPC_4375 IPR005929 Ribulokinase YPC_4375 IPR000577 Carbohydrate kinase, FGGY YPC_4375 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPC_4375 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPC_4377 IPR001851 ABC transporter, permease YPC_4378 IPR015861 ABC transporter, ribose import, RbsA YPC_4378 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4378 IPR003439 ABC transporter-like YPC_4378 IPR003593 AAA+ ATPase domain YPC_4378 IPR017871 ABC transporter, conserved site YPC_4380 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YPC_4380 IPR004960 Bacterial lipid A biosynthesis acyltransferase YPC_4380 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP YPC_4382 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria YPC_4382 IPR018422 Cation/H+ exchanger, CPA1 family YPC_4382 IPR006153 Cation/H+ exchanger YPC_4382 IPR038770 Sodium/solute symporter superfamily YPC_4383 IPR006043 Xanthine/uracil/vitamin C permease YPC_4384 IPR013321 Arc-type ribbon-helix-helix YPC_4384 IPR007337 RelB antitoxin/Antitoxin DinJ YPC_4384 IPR026262 Antitoxin DinJ YPC_4387 IPR003593 AAA+ ATPase domain YPC_4387 IPR017871 ABC transporter, conserved site YPC_4387 IPR003439 ABC transporter-like YPC_4387 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4387 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB YPC_4388 IPR035906 MetI-like superfamily YPC_4388 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_4389 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent YPC_4389 IPR011251 Luciferase-like domain YPC_4389 IPR036661 Luciferase-like domain superfamily YPC_4390 IPR015168 SsuA/THI5-like YPC_4390 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPC_4390 IPR010067 Aliphatic sulfonates-binding protein YPC_4391 IPR020048 NADPH-dependent FMN reductase, SsuE YPC_4391 IPR029039 Flavoprotein-like superfamily YPC_4391 IPR005025 NADPH-dependent FMN reductase-like YPC_4395 IPR011611 Carbohydrate kinase PfkB YPC_4395 IPR002139 Ribokinase/fructokinase YPC_4395 IPR029056 Ribokinase-like YPC_4395 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPC_4395 IPR011877 Ribokinase YPC_4396 IPR023750 RbsD-like superfamily YPC_4396 IPR023064 D-ribose pyranase YPC_4396 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU YPC_4398 IPR003313 AraC-type arabinose-binding/dimerisation domain YPC_4398 IPR014710 RmlC-like jelly roll fold YPC_4398 IPR011051 RmlC-like cupin domain superfamily YPC_4398 IPR018060 DNA binding HTH domain, AraC-type YPC_4398 IPR009057 Homeobox-like domain superfamily YPC_4399 IPR004104 Oxidoreductase, C-terminal YPC_4399 IPR000683 Oxidoreductase, N-terminal YPC_4399 IPR036291 NAD(P)-binding domain superfamily YPC_4402 IPR031325 RHS repeat YPC_4402 IPR006530 YD repeat YPC_4402 IPR001826 RHS protein YPC_4402 IPR022385 Rhs repeat-associated core YPC_4404 IPR006531 Gp5 N-terminal YPC_4404 IPR037026 Vgr protein, OB-fold domain superfamily YPC_4404 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPC_4404 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPC_4411 IPR001826 RHS protein YPC_4411 IPR022385 Rhs repeat-associated core YPC_4415 IPR006531 Gp5 N-terminal YPC_4415 IPR037026 Vgr protein, OB-fold domain superfamily YPC_4415 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPC_4415 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPC_4422 IPR001270 ClpA/B family YPC_4422 IPR018368 ClpA/B, conserved site 1 YPC_4422 IPR041546 ClpA/ClpB, AAA lid domain YPC_4422 IPR004176 Clp, N-terminal YPC_4422 IPR036628 Clp, N-terminal domain superfamily YPC_4422 IPR019489 Clp ATPase, C-terminal YPC_4422 IPR017729 Type VI secretion system, ATPase ClpV1 YPC_4422 IPR003959 ATPase, AAA-type, core YPC_4422 IPR003593 AAA+ ATPase domain YPC_4422 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4431 IPR025948 HTH-like domain YPC_4431 IPR038965 Transposase InsF-like YPC_4431 IPR001584 Integrase, catalytic core YPC_4431 IPR012337 Ribonuclease H-like superfamily YPC_4431 IPR036397 Ribonuclease H superfamily YPC_4435 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase YPC_4435 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_4435 IPR006076 FAD dependent oxidoreductase YPC_4435 IPR031656 Alpha-glycerophosphate oxidase, C-terminal YPC_4435 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily YPC_4436 IPR000811 Glycosyl transferase, family 35 YPC_4436 IPR035090 Phosphorylase pyridoxal-phosphate attachment site YPC_4436 IPR011833 Glycogen/starch/alpha-glucan phosphorylase YPC_4437 IPR001296 Glycosyl transferase, family 1 YPC_4437 IPR011835 Bacterial/plant glycogen synthase YPC_4437 IPR013534 Starch synthase, catalytic domain YPC_4439 IPR005836 ADP-glucose pyrophosphorylase, conserved site YPC_4439 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial YPC_4439 IPR011831 Glucose-1-phosphate adenylyltransferase YPC_4439 IPR005835 Nucleotidyl transferase domain YPC_4439 IPR029044 Nucleotide-diphospho-sugar transferases YPC_4439 IPR011004 Trimeric LpxA-like superfamily YPC_4440 IPR022844 Glycogen debranching enzyme, bacterial YPC_4440 IPR013783 Immunoglobulin-like fold YPC_4440 IPR017853 Glycoside hydrolase superfamily YPC_4440 IPR014756 Immunoglobulin E-set YPC_4440 IPR011837 Glycogen debranching enzyme, GlgX type YPC_4440 IPR013780 Glycosyl hydrolase, all-beta YPC_4440 IPR004193 Glycoside hydrolase, family 13, N-terminal YPC_4440 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPC_4440 IPR040784 Glycogen debranching enzyme, C-terminal domain YPC_4441 IPR037439 1,4-alpha-glucan-branching enzyme YPC_4441 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta YPC_4441 IPR014756 Immunoglobulin E-set YPC_4441 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPC_4441 IPR013780 Glycosyl hydrolase, all-beta YPC_4441 IPR017853 Glycoside hydrolase superfamily YPC_4441 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB YPC_4441 IPR004193 Glycoside hydrolase, family 13, N-terminal YPC_4441 IPR013783 Immunoglobulin-like fold YPC_4442 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region YPC_4442 IPR010559 Signal transduction histidine kinase, internal region YPC_4442 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_4442 IPR003018 GAF domain YPC_4443 IPR013783 Immunoglobulin-like fold YPC_4443 IPR008964 Invasin/intimin cell-adhesion fragments YPC_4443 IPR015217 Invasin, domain 3 YPC_4443 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPC_4443 IPR022409 PKD/Chitinase domain YPC_4443 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPC_4443 IPR018392 LysM domain YPC_4443 IPR024519 Inverse autotransporter, beta-domain YPC_4443 IPR038177 Inverse autotransporter, beta-domain superfamily YPC_4444 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPC_4444 IPR015217 Invasin, domain 3 YPC_4444 IPR008964 Invasin/intimin cell-adhesion fragments YPC_4444 IPR022409 PKD/Chitinase domain YPC_4444 IPR024519 Inverse autotransporter, beta-domain YPC_4444 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPC_4444 IPR038177 Inverse autotransporter, beta-domain superfamily YPC_4444 IPR013783 Immunoglobulin-like fold YPC_4444 IPR018392 LysM domain YPC_4450 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site YPC_4450 IPR036291 NAD(P)-binding domain superfamily YPC_4450 IPR012080 Aspartate-semialdehyde dehydrogenase YPC_4450 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type YPC_4450 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPC_4450 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPC_4451 IPR002771 Multiple antibiotic resistance (MarC)-related YPC_4455 IPR006001 Carbohydrate kinase, thermoresistant glucokinase YPC_4455 IPR031322 Shikimate kinase/gluconokinase YPC_4455 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4457 IPR003474 Gluconate transporter YPC_4459 IPR028082 Periplasmic binding protein-like I YPC_4459 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPC_4459 IPR000843 LacI-type HTH domain YPC_4459 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPC_4460 IPR012093 Pirin YPC_4460 IPR011051 RmlC-like cupin domain superfamily YPC_4460 IPR014710 RmlC-like jelly roll fold YPC_4460 IPR003829 Pirin, N-terminal domain YPC_4460 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain YPC_4463 IPR016032 Signal transduction response regulator, C-terminal effector YPC_4463 IPR036388 Winged helix-like DNA-binding domain superfamily YPC_4463 IPR011006 CheY-like superfamily YPC_4463 IPR001867 OmpR/PhoB-type DNA-binding domain YPC_4463 IPR001789 Signal transduction response regulator, receiver domain YPC_4463 IPR039420 Transcriptional regulatory protein WalR-like YPC_4465 IPR013785 Aldolase-type TIM barrel YPC_4465 IPR000771 Fructose-bisphosphate aldolase, class-II YPC_4465 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 YPC_4467 IPR025997 Periplasmic binding protein YPC_4467 IPR028082 Periplasmic binding protein-like I YPC_4468 IPR001851 ABC transporter, permease YPC_4469 IPR003439 ABC transporter-like YPC_4469 IPR017871 ABC transporter, conserved site YPC_4469 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4469 IPR015861 ABC transporter, ribose import, RbsA YPC_4469 IPR003593 AAA+ ATPase domain YPC_4470 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPC_4470 IPR000014 PAS domain YPC_4470 IPR003594 Histidine kinase/HSP90-like ATPase YPC_4470 IPR011006 CheY-like superfamily YPC_4470 IPR001789 Signal transduction response regulator, receiver domain YPC_4470 IPR035965 PAS domain superfamily YPC_4470 IPR005467 Histidine kinase domain YPC_4470 IPR013656 PAS fold-4 YPC_4470 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPC_4470 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPC_4470 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_4471 IPR023166 HI0933-like insert domain superfamily YPC_4471 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like YPC_4471 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_4472 IPR001204 Phosphate transporter YPC_4475 IPR019598 Universal stress protein B YPC_4476 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPC_4476 IPR006015 Universal stress protein A family YPC_4476 IPR006016 UspA YPC_4477 IPR033922 NAD(P) binding domain of glutamate dehydrogenase YPC_4477 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase YPC_4477 IPR033524 Leu/Phe/Val dehydrogenases active site YPC_4477 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YPC_4477 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain YPC_4477 IPR014362 Glutamate dehydrogenase YPC_4477 IPR036291 NAD(P)-binding domain superfamily YPC_4478 IPR024079 Metallopeptidase, catalytic domain superfamily YPC_4478 IPR001818 Peptidase M10, metallopeptidase YPC_4478 IPR001343 RTX calcium-binding nonapeptide repeat YPC_4478 IPR013858 Peptidase M10 serralysin, C-terminal YPC_4478 IPR018511 Hemolysin-type calcium-binding conserved site YPC_4478 IPR034033 Serralysin-like metallopeptidase domain YPC_4478 IPR011049 Serralysin-like metalloprotease, C-terminal YPC_4478 IPR016294 Peptidase M10B YPC_4478 IPR006026 Peptidase, metallopeptidase YPC_4479 IPR007536 Ribosomal RNA small subunit methyltransferase J YPC_4479 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_4480 IPR001567 Peptidase M3A/M3B catalytic domain YPC_4480 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 YPC_4482 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPC_4482 IPR007473 Ribosomal RNA large subunit methyltransferase J YPC_4482 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_4483 IPR006322 Glutathione reductase, eukaryote/bacterial YPC_4483 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YPC_4483 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YPC_4483 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPC_4483 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPC_4483 IPR023753 FAD/NAD(P)-binding domain YPC_4483 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_4484 IPR008599 Putative sugar diacid recognition YPC_4484 IPR041522 CdaR, GGDEF-like domain YPC_4484 IPR042070 PucR C-terminal helix-turn-helix domain superfamily YPC_4484 IPR025736 PucR C-terminal helix-turn-helix domain YPC_4487 IPR003474 Gluconate transporter YPC_4488 IPR004381 Glycerate kinase YPC_4488 IPR018197 Glycerate kinase, restriction-enzyme-like fold YPC_4488 IPR036129 Glycerate kinase superfamily YPC_4488 IPR018193 Glycerate kinase, flavodoxin-like fold YPC_4493 IPR017039 Virulence factor BrkB YPC_4493 IPR005274 Inner membrane protein YhjD YPC_4494 IPR038433 CDP-diacylglycerol pyrophosphatase superfamily YPC_4494 IPR003763 CDP-diacylglycerol pyrophosphatase YPC_4494 IPR036265 HIT-like superfamily YPC_4497 IPR001633 EAL domain YPC_4497 IPR035919 EAL domain superfamily YPC_4498 IPR004370 4-oxalocrotonate tautomerase YPC_4498 IPR014347 Tautomerase/MIF superfamily YPC_4498 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type YPC_4499 IPR029056 Ribokinase-like YPC_4499 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPC_4499 IPR011611 Carbohydrate kinase PfkB YPC_4500 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPC_4500 IPR011765 Peptidase M16, N-terminal YPC_4500 IPR007863 Peptidase M16, C-terminal YPC_4501 IPR018107 Sodium:dicarboxylate symporter, conserved site YPC_4501 IPR001991 Sodium:dicarboxylate symporter YPC_4501 IPR023954 C4-dicarboxylate transport protein YPC_4501 IPR036458 Sodium:dicarboxylate symporter superfamily YPC_4503 IPR010702 Periplasmic pectate lyase YPC_4504 IPR009331 Oligogalacturonate-specific porin YPC_4505 IPR001633 EAL domain YPC_4505 IPR033419 Gammaproteobacterial periplasmic sensor domain GAPES3 YPC_4505 IPR000160 GGDEF domain YPC_4505 IPR035919 EAL domain superfamily YPC_4505 IPR029787 Nucleotide cyclase YPC_4505 IPR003660 HAMP domain YPC_4507 IPR019834 Glycoside hydrolase, family 8, conserved site YPC_4507 IPR002037 Glycoside hydrolase, family 8 YPC_4507 IPR012341 Six-hairpin glycosidase-like superfamily YPC_4507 IPR008928 Six-hairpin glycosidase superfamily YPC_4508 IPR003593 AAA+ ATPase domain YPC_4508 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPC_4508 IPR017871 ABC transporter, conserved site YPC_4508 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4508 IPR003439 ABC transporter-like YPC_4509 IPR003593 AAA+ ATPase domain YPC_4509 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4509 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPC_4509 IPR017871 ABC transporter, conserved site YPC_4509 IPR003439 ABC transporter-like YPC_4510 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPC_4510 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_4510 IPR035906 MetI-like superfamily YPC_4511 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_4511 IPR035906 MetI-like superfamily YPC_4512 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_4512 IPR035906 MetI-like superfamily YPC_4513 IPR030678 Peptide/nickel binding protein, MppA-type YPC_4513 IPR039424 Solute-binding protein family 5 YPC_4513 IPR023765 Solute-binding protein family 5, conserved site YPC_4513 IPR000914 Solute-binding protein family 5 domain YPC_4515 IPR027282 Two partner secretion pathway transporter YPC_4515 IPR005565 Haemolysin activator HlyB, C-terminal YPC_4515 IPR034746 POTRA domain YPC_4515 IPR013686 Polypeptide-transport-associated, ShlB-type YPC_4515 IPR035251 ShlB, POTRA domain YPC_4516 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPC_4516 IPR011050 Pectin lyase fold/virulence factor YPC_4516 IPR012334 Pectin lyase fold YPC_4516 IPR006626 Parallel beta-helix repeat YPC_4516 IPR025157 Hemagglutinin repeat YPC_4516 IPR008619 Filamentous haemagglutinin repeat YPC_4516 IPR006914 VENN motif-containing domain YPC_4516 IPR008638 Filamentous haemagglutinin, N-terminal YPC_4517 IPR002686 Transposase IS200-like YPC_4517 IPR036515 Transposase IS200-like superfamily YPC_4519 IPR011701 Major facilitator superfamily YPC_4519 IPR020846 Major facilitator superfamily domain YPC_4519 IPR036259 MFS transporter superfamily YPC_4519 IPR021159 Glycerate/sugar phosphate transporter, conserved site YPC_4519 IPR000849 Sugar phosphate transporter YPC_4522 IPR016032 Signal transduction response regulator, C-terminal effector YPC_4522 IPR000792 Transcription regulator LuxR, C-terminal YPC_4522 IPR011006 CheY-like superfamily YPC_4522 IPR001789 Signal transduction response regulator, receiver domain YPC_4523 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPC_4523 IPR012549 Phosphoethanolamine transferase, N-terminal YPC_4523 IPR000917 Sulfatase, N-terminal YPC_4523 IPR040423 Phosphoethanolamine transferase YPC_4524 IPR029058 Alpha/Beta hydrolase fold YPC_4524 IPR012354 Esterase/lipase YPC_4524 IPR022742 Serine aminopeptidase, S33 YPC_4525 IPR004840 Amino acid permease, conserved site YPC_4525 IPR004841 Amino acid permease/ SLC12A domain YPC_4526 IPR001106 Aromatic amino acid lyase YPC_4526 IPR005921 Histidine ammonia-lyase YPC_4526 IPR008948 L-Aspartase-like YPC_4526 IPR022313 Phenylalanine/histidine ammonia-lyases, active site YPC_4526 IPR024083 Fumarase/histidase, N-terminal YPC_4527 IPR036190 Urocanase superfamily YPC_4527 IPR035085 Urocanase, Rossmann-like domain YPC_4527 IPR035400 Urocanase, N-terminal domain YPC_4527 IPR023637 Urocanase YPC_4527 IPR035401 Urocanase, C-terminal domain YPC_4527 IPR038364 Urocanase, central domain superfamily YPC_4527 IPR023636 Urocanase conserved site YPC_4528 IPR005858 Cysteine synthase CysM YPC_4528 IPR005856 Cysteine synthase YPC_4528 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPC_4528 IPR001926 Pyridoxal-phosphate dependent enzyme YPC_4528 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPC_4529 IPR029057 Phosphoribosyltransferase-like YPC_4529 IPR000836 Phosphoribosyltransferase domain YPC_4529 IPR005764 Adenine phosphoribosyl transferase YPC_4531 IPR011761 ATP-grasp fold YPC_4532 IPR033870 FatB domain YPC_4532 IPR002491 ABC transporter periplasmic binding domain YPC_4535 IPR017871 ABC transporter, conserved site YPC_4535 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4535 IPR003593 AAA+ ATPase domain YPC_4535 IPR003439 ABC transporter-like YPC_4540 IPR025668 Transposase DDE domain YPC_4541 IPR025668 Transposase DDE domain YPC_4543 IPR007684 Zinc finger, Ogr/Delta-type YPC_4545 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPC_4545 IPR013762 Integrase-like, catalytic domain superfamily YPC_4545 IPR002104 Integrase, catalytic domain YPC_4545 IPR038488 Integrase, DNA-binding domain superfamily YPC_4545 IPR025166 Integrase, DNA-binding domain YPC_4545 IPR010998 Integrase/recombinase, N-terminal YPC_4545 IPR004107 Integrase, SAM-like, N-terminal YPC_4547 IPR028082 Periplasmic binding protein-like I YPC_4547 IPR020449 Transcription regulator HTH, AraC- type YPC_4547 IPR009057 Homeobox-like domain superfamily YPC_4547 IPR018060 DNA binding HTH domain, AraC-type YPC_4547 IPR018062 HTH domain AraC-type, conserved site YPC_4548 IPR001851 ABC transporter, permease YPC_4549 IPR003593 AAA+ ATPase domain YPC_4549 IPR003439 ABC transporter-like YPC_4549 IPR013455 ABC transporter, D-xylose, ATP-binding protein YPC_4549 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4549 IPR017871 ABC transporter, conserved site YPC_4550 IPR028082 Periplasmic binding protein-like I YPC_4550 IPR025997 Periplasmic binding protein YPC_4550 IPR013456 D-xylose ABC transporter, substrate-binding protein YPC_4551 IPR001998 Xylose isomerase YPC_4551 IPR013452 Xylose isomerase, bacterial-type YPC_4551 IPR036237 Xylose isomerase-like superfamily YPC_4552 IPR006000 Xylulokinase YPC_4552 IPR018483 Carbohydrate kinase, FGGY, conserved site YPC_4552 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPC_4552 IPR000577 Carbohydrate kinase, FGGY YPC_4552 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPC_4554 IPR013783 Immunoglobulin-like fold YPC_4554 IPR001829 Pili assembly chaperone, bacterial YPC_4554 IPR008962 PapD-like superfamily YPC_4554 IPR018046 Pili assembly chaperone, conserved site YPC_4554 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPC_4554 IPR016147 Pili assembly chaperone, N-terminal YPC_4554 IPR016148 Pili assembly chaperone, C-terminal YPC_4555 IPR037224 PapC, N-terminal domain superfamily YPC_4555 IPR025885 PapC, N-terminal domain YPC_4555 IPR025949 PapC-like, C-terminal domain YPC_4555 IPR000015 Outer membrane usher protein YPC_4555 IPR018030 Fimbrial membrane usher, conserved site YPC_4555 IPR042186 Outer membrane usher protein FimD, plug domain YPC_4557 IPR018030 Fimbrial membrane usher, conserved site YPC_4557 IPR042186 Outer membrane usher protein FimD, plug domain YPC_4557 IPR025949 PapC-like, C-terminal domain YPC_4557 IPR025885 PapC, N-terminal domain YPC_4557 IPR037224 PapC, N-terminal domain superfamily YPC_4557 IPR000015 Outer membrane usher protein YPC_4558 IPR008966 Adhesion domain superfamily YPC_4558 IPR036937 Fimbrial-type adhesion domain superfamily YPC_4558 IPR000259 Fimbrial-type adhesion domain YPC_4560 IPR032905 O-acetyltransferase WecH YPC_4560 IPR002656 Acyltransferase 3 YPC_4563 IPR001584 Integrase, catalytic core YPC_4563 IPR012337 Ribonuclease H-like superfamily YPC_4563 IPR036397 Ribonuclease H superfamily YPC_4563 IPR038965 Transposase InsF-like YPC_4563 IPR025948 HTH-like domain YPC_4564 IPR020846 Major facilitator superfamily domain YPC_4564 IPR036259 MFS transporter superfamily YPC_4564 IPR011701 Major facilitator superfamily YPC_4568 IPR025296 Domain of unknown function DUF4158 YPC_4568 IPR002513 Tn3 transposase DDE domain YPC_4571 IPR004534 L-seryl-tRNA(Sec) selenium transferase YPC_4571 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_4571 IPR018319 L-seryl-tRNA selenium transferase-like YPC_4571 IPR015424 Pyridoxal phosphate-dependent transferase YPC_4571 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain YPC_4572 IPR006452 Formate dehydrogenase accessory protein YPC_4572 IPR024064 FdhE-like superfamily YPC_4573 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPC_4573 IPR006471 Formate dehydrogenase, gamma subunit YPC_4573 IPR016174 Di-haem cytochrome, transmembrane YPC_4574 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPC_4574 IPR015246 Formate dehydrogenase, transmembrane YPC_4574 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPC_4574 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria YPC_4574 IPR014603 Formate dehydrogenase iron-sulphur subunit YPC_4574 IPR038384 Formate dehydrogenase, C-terminal domain superfamily YPC_4577 IPR003786 Sulfur carrier protein FdhD YPC_4577 IPR016193 Cytidine deaminase-like YPC_4579 IPR019832 Manganese/iron superoxide dismutase, C-terminal YPC_4579 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily YPC_4579 IPR019833 Manganese/iron superoxide dismutase, binding site YPC_4579 IPR001189 Manganese/iron superoxide dismutase YPC_4579 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily YPC_4579 IPR019831 Manganese/iron superoxide dismutase, N-terminal YPC_4580 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPC_4580 IPR003660 HAMP domain YPC_4580 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPC_4580 IPR004090 Chemotaxis methyl-accepting receptor YPC_4580 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPC_4580 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPC_4584 IPR021230 Protein of unknown function DUF2810 YPC_4586 IPR007761 Mannitol repressor MtlR-like YPC_4586 IPR038026 MtlR-like superfamily YPC_4587 IPR036291 NAD(P)-binding domain superfamily YPC_4587 IPR023027 Mannitol dehydrogenase, conserved site YPC_4587 IPR013118 Mannitol dehydrogenase, C-terminal YPC_4587 IPR013131 Mannitol dehydrogenase, N-terminal YPC_4587 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPC_4587 IPR023028 Mannitol-1-phosphate 5-dehydrogenase YPC_4587 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPC_4587 IPR000669 Mannitol dehydrogenase YPC_4588 IPR013011 Phosphotransferase system, EIIB component, type 2 YPC_4588 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC YPC_4588 IPR013014 Phosphotransferase system, EIIC component, type 2 YPC_4588 IPR002178 PTS EIIA type-2 domain YPC_4588 IPR016152 Phosphotransferase/anion transporter YPC_4588 IPR036095 PTS system IIB component-like superfamily YPC_4588 IPR029503 Phosphotransferase system EIIB component, mannitol-specific YPC_4588 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPC_4588 IPR003352 Phosphotransferase system, EIIC YPC_4590 IPR021413 Protein of unknown function DUF3053 YPC_4592 IPR006194 Glycine-tRNA synthetase, heterodimeric YPC_4592 IPR015944 Glycine-tRNA ligase, beta subunit YPC_4592 IPR008909 DALR anticodon binding YPC_4593 IPR002310 Glycine-tRNA ligase, alpha subunit YPC_4593 IPR006194 Glycine-tRNA synthetase, heterodimeric YPC_4594 IPR011257 DNA glycosylase YPC_4594 IPR005019 Methyladenine glycosylase YPC_4594 IPR004597 DNA-3-methyladenine glycosylase I YPC_4597 IPR039567 Glycine zipper domain YPC_4597 IPR036737 OmpA-like domain superfamily YPC_4597 IPR006690 Outer membrane protein, OmpA-like, conserved site YPC_4597 IPR006665 OmpA-like domain YPC_4597 IPR006664 Outer membrane protein, bacterial YPC_4599 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPC_4599 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPC_4599 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPC_4599 IPR036291 NAD(P)-binding domain superfamily YPC_4599 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPC_4599 IPR023756 Glyoxylate/hydroxypyruvate reductase B YPC_4600 IPR017853 Glycoside hydrolase superfamily YPC_4600 IPR014635 Alpha-amylase, MalS type YPC_4600 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPC_4602 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPC_4602 IPR015424 Pyridoxal phosphate-dependent transferase YPC_4602 IPR004839 Aminotransferase, class I/classII YPC_4603 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YPC_4603 IPR023018 Transport protein YidE, putative YPC_4603 IPR006512 YidE/YbjL duplication YPC_4603 IPR006037 Regulator of K+ conductance, C-terminal YPC_4605 IPR008978 HSP20-like chaperone YPC_4605 IPR037913 Small heat shock protein IbpA/IbpB, ACD domain YPC_4605 IPR002068 Alpha crystallin/Hsp20 domain YPC_4605 IPR022848 Small heat shock protein IbpB YPC_4606 IPR023728 Small heat shock protein IbpA YPC_4606 IPR008978 HSP20-like chaperone YPC_4606 IPR037913 Small heat shock protein IbpA/IbpB, ACD domain YPC_4606 IPR002068 Alpha crystallin/Hsp20 domain YPC_4607 IPR010780 Protein of unknown function DUF1375 YPC_4608 IPR011659 WD40-like Beta Propeller YPC_4608 IPR022223 Protein of unknown function DUF3748 YPC_4608 IPR011042 Six-bladed beta-propeller, TolB-like YPC_4609 IPR022223 Protein of unknown function DUF3748 YPC_4609 IPR011042 Six-bladed beta-propeller, TolB-like YPC_4609 IPR011659 WD40-like Beta Propeller YPC_4610 IPR005789 Threonine dehydratase, catabolic YPC_4610 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPC_4610 IPR001926 Pyridoxal-phosphate dependent enzyme YPC_4610 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPC_4610 IPR002912 ACT domain YPC_4611 IPR023401 Ornithine cyclodeaminase, N-terminal YPC_4611 IPR014334 Ectoine utilization protein EutC YPC_4611 IPR036291 NAD(P)-binding domain superfamily YPC_4611 IPR003462 Ornithine cyclodeaminase/mu-crystallin YPC_4613 IPR001584 Integrase, catalytic core YPC_4613 IPR025948 HTH-like domain YPC_4613 IPR036397 Ribonuclease H superfamily YPC_4613 IPR012337 Ribonuclease H-like superfamily YPC_4613 IPR038965 Transposase InsF-like YPC_4614 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPC_4614 IPR036412 HAD-like superfamily YPC_4614 IPR000150 Cof family YPC_4614 IPR023214 HAD superfamily YPC_4615 IPR034160 DNA gyrase subunit B, TOPRIM domain YPC_4615 IPR006171 TOPRIM domain YPC_4615 IPR018522 DNA topoisomerase, type IIA, conserved site YPC_4615 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 YPC_4615 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal YPC_4615 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YPC_4615 IPR001241 DNA topoisomerase, type IIA YPC_4615 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPC_4615 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_4615 IPR003594 Histidine kinase/HSP90-like ATPase YPC_4615 IPR041423 DNA gyrase subunit B insert domain YPC_4615 IPR011557 DNA gyrase, subunit B YPC_4615 IPR002288 DNA gyrase B subunit, C-terminal YPC_4615 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPC_4616 IPR042174 DNA-binding RecF, domain 2 YPC_4616 IPR018078 DNA-binding, RecF, conserved site YPC_4616 IPR001238 DNA-binding, RecF YPC_4616 IPR003395 RecF/RecN/SMC, N-terminal YPC_4616 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4617 IPR001001 DNA polymerase III, beta sliding clamp YPC_4617 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal YPC_4617 IPR022637 DNA polymerase III, beta sliding clamp, central YPC_4617 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal YPC_4618 IPR038454 DnaA, N-terminal domain superfamily YPC_4618 IPR010921 Trp repressor/replication initiator YPC_4618 IPR001957 Chromosomal replication control, initiator DnaA YPC_4618 IPR020591 Chromosomal replication control, initiator DnaA-like YPC_4618 IPR018312 Chromosomal replication control, initiator DnaA, conserved site YPC_4618 IPR013317 Chromosomal replication initiator protein DnaA YPC_4618 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4618 IPR003593 AAA+ ATPase domain YPC_4618 IPR013159 Chromosomal replication initiator, DnaA C-terminal YPC_4618 IPR024633 DnaA N-terminal domain YPC_4620 IPR020939 Ribosomal protein L34, conserved site YPC_4620 IPR000271 Ribosomal protein L34 YPC_4621 IPR020539 Ribonuclease P, conserved site YPC_4621 IPR000100 Ribonuclease P YPC_4621 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPC_4621 IPR020568 Ribosomal protein S5 domain 2-type fold YPC_4622 IPR002696 Putative membrane protein insertion efficiency factor YPC_4623 IPR038221 YidC, periplasmic domain superfamily YPC_4623 IPR038210 Membrane insertase YidC, periplasmic domain YPC_4623 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 YPC_4623 IPR028053 Membrane insertase YidC, N-terminal YPC_4623 IPR019998 Membrane insertase YidC YPC_4623 IPR028055 Membrane insertase YidC/Oxa1, C-terminal YPC_4624 IPR006073 GTP binding domain YPC_4624 IPR004520 tRNA modification GTPase MnmE YPC_4624 IPR027368 tRNA modification GTPase MnmE domain 2 YPC_4624 IPR025867 MnmE, helical domain YPC_4624 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4624 IPR005225 Small GTP-binding protein domain YPC_4624 IPR031168 TrmE-type guanine nucleotide-binding domain YPC_4624 IPR018948 GTP-binding protein TrmE, N-terminal YPC_4624 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 YPC_4625 IPR024906 Enoyl reductase FAD binding domain YPC_4625 IPR010758 Trans-2-enoyl-CoA reductase YPC_4625 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative YPC_4629 IPR006043 Xanthine/uracil/vitamin C permease YPC_4629 IPR026033 Azaguanine-like transporters YPC_4631 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPC_4631 IPR023214 HAD superfamily YPC_4631 IPR041492 Haloacid dehalogenase-like hydrolase YPC_4631 IPR006439 HAD hydrolase, subfamily IA YPC_4631 IPR036412 HAD-like superfamily YPC_4632 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_4632 IPR035906 MetI-like superfamily YPC_4632 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPC_4633 IPR035906 MetI-like superfamily YPC_4633 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPC_4633 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_4634 IPR001320 Ionotropic glutamate receptor YPC_4634 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPC_4634 IPR018313 Solute-binding protein family 3, conserved site YPC_4634 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPC_4636 IPR026022 PhoU domain YPC_4636 IPR038078 PhoU-like domain superfamily YPC_4636 IPR028366 Phosphate transport system protein PhoU YPC_4637 IPR005670 Phosphate transport system permease protein 1 YPC_4637 IPR003593 AAA+ ATPase domain YPC_4637 IPR017871 ABC transporter, conserved site YPC_4637 IPR003439 ABC transporter-like YPC_4637 IPR015850 ABC transporter, phosphate import, PstB YPC_4637 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4638 IPR005672 Phosphate transport system permease protein PstA YPC_4638 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_4638 IPR035906 MetI-like superfamily YPC_4639 IPR035906 MetI-like superfamily YPC_4639 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPC_4639 IPR011864 Phosphate ABC transporter, permease protein PstC YPC_4640 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS YPC_4640 IPR024370 PBP domain YPC_4642 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising YPC_4642 IPR035466 GlmS/AgaS, SIS domain 1 YPC_4642 IPR001347 Sugar isomerase (SIS) YPC_4642 IPR017932 Glutamine amidotransferase type 2 domain YPC_4642 IPR029055 Nucleophile aminohydrolases, N-terminal YPC_4642 IPR035490 GlmS/FrlB, SIS domain 2 YPC_4643 IPR029044 Nucleotide-diphospho-sugar transferases YPC_4643 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase YPC_4643 IPR025877 MobA-like NTP transferase YPC_4643 IPR018357 Hexapeptide transferase, conserved site YPC_4643 IPR001451 Hexapeptide repeat YPC_4643 IPR011004 Trimeric LpxA-like superfamily YPC_4643 IPR038009 GlmU, C-terminal LbH domain YPC_4645 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain YPC_4645 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal YPC_4645 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal YPC_4645 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily YPC_4645 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit YPC_4646 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPC_4646 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily YPC_4646 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain YPC_4646 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4646 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPC_4646 IPR005722 ATP synthase, F1 complex, beta subunit YPC_4646 IPR003593 AAA+ ATPase domain YPC_4646 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal YPC_4648 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily YPC_4648 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site YPC_4648 IPR000131 ATP synthase, F1 complex, gamma subunit YPC_4649 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily YPC_4649 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPC_4649 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain YPC_4649 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily YPC_4649 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain YPC_4649 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPC_4649 IPR005294 ATP synthase, F1 complex, alpha subunit YPC_4649 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4649 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily YPC_4649 IPR000793 ATP synthase, alpha subunit, C-terminal YPC_4650 IPR020781 ATPase, OSCP/delta subunit, conserved site YPC_4650 IPR000711 ATPase, OSCP/delta subunit YPC_4650 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily YPC_4651 IPR005864 ATP synthase, F0 complex, subunit b, bacterial YPC_4651 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast YPC_4651 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily YPC_4652 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast YPC_4652 IPR035921 F/V-ATP synthase subunit C superfamily YPC_4652 IPR002379 V-ATPase proteolipid subunit C-like domain YPC_4652 IPR038662 F1F0 ATP synthase subunit C superfamily YPC_4652 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site YPC_4652 IPR000454 ATP synthase, F0 complex, subunit C YPC_4653 IPR035908 ATP synthase, F0 complex, subunit A superfamily YPC_4653 IPR023011 ATP synthase, F0 complex, subunit A, active site YPC_4653 IPR000568 ATP synthase, F0 complex, subunit A YPC_4654 IPR005598 ATP synthase protein I YPC_4655 IPR003682 rRNA small subunit methyltransferase G YPC_4655 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_4657 IPR036188 FAD/NAD(P)-binding domain superfamily YPC_4657 IPR026904 GidA associated domain 3 YPC_4657 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG YPC_4657 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related YPC_4657 IPR020595 MnmG-related, conserved site YPC_4659 IPR001584 Integrase, catalytic core YPC_4659 IPR017894 HTH domain, IS21 transposase-type YPC_4659 IPR012337 Ribonuclease H-like superfamily YPC_4663 IPR003537 Yersinia virulence determinant YopE YPC_4663 IPR015110 YopE, N-terminal domain YPC_4663 IPR037168 Virulence factor YopE, GAP domain superfamily YPC_4663 IPR014773 Virulence factor YopE, GAP domain YPC_4672 IPR012337 Ribonuclease H-like superfamily YPC_4673 IPR036397 Ribonuclease H superfamily YPC_4673 IPR025948 HTH-like domain YPC_4673 IPR001584 Integrase, catalytic core YPC_4673 IPR012337 Ribonuclease H-like superfamily YPC_4675 IPR008874 Enterobacterial TraT complement resistance YPC_4688 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPC_4688 IPR032675 Leucine-rich repeat domain superfamily YPC_4688 IPR001611 Leucine-rich repeat YPC_4694 IPR008898 YopD-like YPC_4697 IPR005413 Low calcium response V antigen YPC_4697 IPR036139 Virulence-associated V antigen superfamily YPC_4698 IPR009863 Type III secretion protein, LcrG YPC_4715 IPR003313 AraC-type arabinose-binding/dimerisation domain YPC_4715 IPR009057 Homeobox-like domain superfamily YPC_4715 IPR037923 Transcription regulator HTH-like YPC_4715 IPR020449 Transcription regulator HTH, AraC- type YPC_4715 IPR018062 HTH domain AraC-type, conserved site YPC_4715 IPR018060 DNA binding HTH domain, AraC-type YPC_4716 IPR035181 Protein of unknown function DUF5463 YPC_4717 IPR013353 Type III secretion system chaperone YscB YPC_4717 IPR010261 Tir chaperone protein (CesT) family YPC_4722 IPR037203 Type III secretion, needle-protein-like superfamily YPC_4722 IPR021123 Type III secretion, needle-protein-like YPC_4722 IPR011841 Type III secretion system, needle protein YPC_4725 IPR012670 Type III secretion system, YscI/HrpB YPC_4726 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ YPC_4726 IPR006182 Secretory protein YscJ/FliF YPC_4729 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily YPC_4729 IPR015103 Protein-tyrosine phosphatase, YopH, N-terminal YPC_4730 IPR002514 Transposase IS3/IS911family YPC_4730 IPR009057 Homeobox-like domain superfamily YPC_4734 IPR000387 Tyrosine specific protein phosphatases domain YPC_4734 IPR015103 Protein-tyrosine phosphatase, YopH, N-terminal YPC_4734 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily YPC_4734 IPR000242 PTP type protein phosphatase YPC_4734 IPR016130 Protein-tyrosine phosphatase, active site YPC_4734 IPR003595 Protein-tyrosine phosphatase, catalytic YPC_4734 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH YPC_4734 IPR029021 Protein-tyrosine phosphatase-like YPC_4735 IPR039552 Transposase IS66, C-terminal YPC_4735 IPR004291 Transposase, IS66 YPC_4735 IPR024463 Transposase TnpC, homeodomain YPC_4735 IPR024474 Zinc-finger binding domain of transposase IS66 YPC_4736 IPR001584 Integrase, catalytic core YPC_4736 IPR025948 HTH-like domain YPC_4736 IPR012337 Ribonuclease H-like superfamily YPC_4736 IPR036397 Ribonuclease H superfamily YPC_4742 IPR012337 Ribonuclease H-like superfamily YPC_4744 IPR003446 Plasmid replication initiation, RepA YPC_4744 IPR017837 Plasmid replication initiator, RepA, IncFII type YPC_4746 IPR019661 Replication regulatory protein RepA2 YPC_4751 IPR014862 TrwC relaxase YPC_4751 IPR040987 TraI, N-terminal subdomain YPC_4751 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4751 IPR040668 TraI, 2B/2B-like domain YPC_4751 IPR014129 Conjugative transfer relaxase protein TraI YPC_4751 IPR014059 Conjugative relaxase, N-terminal YPC_4751 IPR009767 DNA helicase, TraI type YPC_4753 IPR011049 Serralysin-like metalloprotease, C-terminal YPC_4753 IPR005594 YadA-like, C-terminal YPC_4753 IPR008126 Outer membrane adhesion, Yersinia YPC_4753 IPR008640 Head domain of trimeric autotransporter adhesin YPC_4753 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPC_4755 IPR002513 Tn3 transposase DDE domain YPC_4755 IPR025296 Domain of unknown function DUF4158 YPC_4756 IPR006119 Resolvase, N-terminal catalytic domain YPC_4756 IPR009057 Homeobox-like domain superfamily YPC_4756 IPR006118 Recombinase, conserved site YPC_4756 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily YPC_4756 IPR006120 Resolvase, HTH domain YPC_4759 IPR009057 Homeobox-like domain superfamily YPC_4759 IPR002514 Transposase IS3/IS911family YPC_4760 IPR036397 Ribonuclease H superfamily YPC_4760 IPR012337 Ribonuclease H-like superfamily YPC_4760 IPR001584 Integrase, catalytic core YPC_4760 IPR025948 HTH-like domain YPC_4762 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4762 IPR002611 IstB-like ATP-binding protein YPC_4762 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_4762 IPR001270 ClpA/B family YPC_4762 IPR003593 AAA+ ATPase domain YPC_4764 IPR012337 Ribonuclease H-like superfamily YPC_4764 IPR017894 HTH domain, IS21 transposase-type YPC_4764 IPR001584 Integrase, catalytic core YPC_4764 IPR006120 Resolvase, HTH domain YPC_4764 IPR036397 Ribonuclease H superfamily YPC_4765 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4765 IPR002611 IstB-like ATP-binding protein YPC_4765 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_4765 IPR003593 AAA+ ATPase domain YPC_4765 IPR001270 ClpA/B family YPC_4766 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPC_4767 IPR037053 Phage tail collar domain superfamily YPC_4767 IPR008969 Carboxypeptidase-like, regulatory domain superfamily YPC_4767 IPR008969 Carboxypeptidase-like, regulatory domain superfamily YPC_4767 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal YPC_4767 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 YPC_4767 IPR011083 Phage tail collar domain YPC_4767 IPR037053 Phage tail collar domain superfamily YPC_4767 IPR011083 Phage tail collar domain YPC_4767 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 YPC_4767 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal YPC_4774 IPR013491 Caudovirus, tape measure, N-terminal YPC_4793 IPR011527 ABC transporter type 1, transmembrane domain YPC_4793 IPR039421 Type I protein exporter YPC_4793 IPR039395 Peptidase C39-like A YPC_4793 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPC_4793 IPR003593 AAA+ ATPase domain YPC_4793 IPR003439 ABC transporter-like YPC_4793 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4793 IPR010132 ATPase, type I secretion system, HlyB YPC_4793 IPR005074 Peptidase C39, bacteriocin processing YPC_4793 IPR017871 ABC transporter, conserved site YPC_4794 IPR041468 ParB/Spo0J, HTH domain YPC_4794 IPR004437 ParB/RepB/Spo0J partition protein YPC_4794 IPR003115 ParB/Sulfiredoxin YPC_4794 IPR036086 ParB/Sulfiredoxin superfamily YPC_4795 IPR004437 ParB/RepB/Spo0J partition protein YPC_4795 IPR041468 ParB/Spo0J, HTH domain YPC_4795 IPR003115 ParB/Sulfiredoxin YPC_4795 IPR036086 ParB/Sulfiredoxin superfamily YPC_4796 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4796 IPR012340 Nucleic acid-binding, OB-fold YPC_4796 IPR001650 Helicase, C-terminal YPC_4796 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPC_4796 IPR011545 DEAD/DEAH box helicase domain YPC_4796 IPR004609 ATP-dependent DNA helicase RecG YPC_4796 IPR033454 RecG, wedge domain YPC_4815 IPR000525 Initiator Rep protein YPC_4824 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4824 IPR020584 DNA recombination/repair protein RecA, conserved site YPC_4824 IPR013765 DNA recombination and repair protein RecA YPC_4824 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain YPC_4824 IPR003593 AAA+ ATPase domain YPC_4824 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface YPC_4824 IPR023400 DNA recombination and repair protein RecA, C-terminal YPC_4826 IPR038969 Flap endonuclease YPC_4826 IPR029060 PIN-like domain superfamily YPC_4826 IPR008918 Helix-hairpin-helix motif, class 2 YPC_4826 IPR020045 DNA polymerase I-like, H3TH domain YPC_4826 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPC_4826 IPR002421 5'-3' exonuclease, N-terminal YPC_4826 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPC_4831 IPR040982 DNA polymerase III alpha subunit finger domain YPC_4831 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain YPC_4831 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPC_4831 IPR004805 DNA polymerase III, alpha subunit YPC_4831 IPR029460 DNA polymerase, helix-hairpin-helix motif YPC_4831 IPR004013 PHP domain YPC_4831 IPR036895 Uracil-DNA glycosylase-like domain superfamily YPC_4833 IPR036465 von Willebrand factor A-like domain superfamily YPC_4833 IPR006538 Cobalt chelatase, CobT subunit YPC_4833 IPR025861 Cobalamin biosynthesis protein CobT VWA domain YPC_4833 IPR002035 von Willebrand factor, type A YPC_4838 IPR008966 Adhesion domain superfamily YPC_4838 IPR015335 F1 capsule antigen YPC_4838 IPR038699 F1 capsule antigen superfamily YPC_4839 IPR037224 PapC, N-terminal domain superfamily YPC_4839 IPR025885 PapC, N-terminal domain YPC_4839 IPR025949 PapC-like, C-terminal domain YPC_4839 IPR042186 Outer membrane usher protein FimD, plug domain YPC_4839 IPR018030 Fimbrial membrane usher, conserved site YPC_4839 IPR000015 Outer membrane usher protein YPC_4840 IPR018046 Pili assembly chaperone, conserved site YPC_4840 IPR016148 Pili assembly chaperone, C-terminal YPC_4840 IPR001829 Pili assembly chaperone, bacterial YPC_4840 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPC_4840 IPR008962 PapD-like superfamily YPC_4840 IPR013783 Immunoglobulin-like fold YPC_4840 IPR016147 Pili assembly chaperone, N-terminal YPC_4841 IPR018062 HTH domain AraC-type, conserved site YPC_4841 IPR011256 Regulatory factor, effector binding domain superfamily YPC_4841 IPR020449 Transcription regulator HTH, AraC- type YPC_4841 IPR029442 GyrI-like small molecule binding domain YPC_4841 IPR009057 Homeobox-like domain superfamily YPC_4841 IPR018060 DNA binding HTH domain, AraC-type YPC_4847 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4847 IPR002611 IstB-like ATP-binding protein YPC_4847 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_4847 IPR003593 AAA+ ATPase domain YPC_4847 IPR001270 ClpA/B family YPC_4848 IPR036397 Ribonuclease H superfamily YPC_4848 IPR012337 Ribonuclease H-like superfamily YPC_4848 IPR006120 Resolvase, HTH domain YPC_4848 IPR001584 Integrase, catalytic core YPC_4848 IPR017894 HTH domain, IS21 transposase-type YPC_4849 IPR004437 ParB/RepB/Spo0J partition protein YPC_4849 IPR036086 ParB/Sulfiredoxin superfamily YPC_4849 IPR003115 ParB/Sulfiredoxin YPC_4850 IPR009253 Protein of unknown function DUF905 YPC_4850 IPR038612 YkfF-like domain superfamily YPC_4853 IPR009811 Protein of unknown function DUF1380 YPC_4855 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPC_4855 IPR001091 Restriction/modification DNA-methylase YPC_4855 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPC_4855 IPR002941 DNA methylase N-4/N-6 YPC_4858 IPR001126 UmuC domain YPC_4858 IPR025188 Domain of unknown function DUF4113 YPC_4858 IPR017961 DNA polymerase, Y-family, little finger domain YPC_4858 IPR036775 DNA polymerase, Y-family, little finger domain superfamily YPC_4860 IPR036086 ParB/Sulfiredoxin superfamily YPC_4860 IPR014884 ParB protein family, C-terminal YPC_4860 IPR003115 ParB/Sulfiredoxin YPC_4860 IPR004437 ParB/RepB/Spo0J partition protein YPC_4861 IPR025669 AAA domain YPC_4861 IPR041250 ParA helix turn helix domain YPC_4861 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4864 IPR006118 Recombinase, conserved site YPC_4864 IPR006119 Resolvase, N-terminal catalytic domain YPC_4864 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily YPC_4864 IPR006120 Resolvase, HTH domain YPC_4865 IPR010106 Recombination-promoting nuclease RpnA YPC_4865 IPR006842 Transposase (putative), YhgA-like YPC_4867 IPR001736 Phospholipase D/Transphosphatidylase YPC_4867 IPR025202 Phospholipase D-like domain YPC_4870 IPR000477 Reverse transcriptase domain YPC_4873 IPR006842 Transposase (putative), YhgA-like YPC_4873 IPR010106 Recombination-promoting nuclease RpnA YPC_4874 IPR003346 Transposase, IS116/IS110/IS902 YPC_4874 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal YPC_4875 IPR001207 Transposase, mutator type YPC_4879 IPR036397 Ribonuclease H superfamily YPC_4879 IPR017894 HTH domain, IS21 transposase-type YPC_4879 IPR001584 Integrase, catalytic core YPC_4879 IPR006120 Resolvase, HTH domain YPC_4879 IPR012337 Ribonuclease H-like superfamily YPC_4881 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPC_4881 IPR002611 IstB-like ATP-binding protein YPC_4881 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPC_4881 IPR001270 ClpA/B family YPC_4881 IPR003593 AAA+ ATPase domain YPC_4882 IPR000769 Regulatory protein Rop YPC_4882 IPR035962 Rop-like superfamily YPC_4887 IPR000036 Peptidase A26, omptin YPC_4887 IPR020079 Peptidase A26, omptin, conserved site YPC_4887 IPR020080 Outer membrane adhesin/peptidase omptin YPC_4889 IPR009241 Toxin HigB-like