locus-tag class description YPC_0001 PF00258 Flavodoxin YPC_0002 PF01037 Lrp/AsnC ligand binding domain YPC_0003 PF03590 Aspartate-ammonia ligase YPC_0004 PF05762 VWA domain containing CoxE-like protein YPC_0005 PF12592 Protein of unknown function (DUF3763) YPC_0005 PF17868 AAA lid domain YPC_0005 PF07728 AAA domain (dynein-related subfamily) YPC_0006 PF02705 K+ potassium transporter YPC_0007 PF05025 RbsD / FucU transport protein family YPC_0008 PF00294 pfkB family carbohydrate kinase YPC_0010 PF07690 Major Facilitator Superfamily YPC_0011 PF07729 FCD domain YPC_0011 PF00392 Bacterial regulatory proteins, gntR family YPC_0019 PF04204 Homoserine O-succinyltransferase YPC_0021 PF01274 Malate synthase YPC_0022 PF00463 Isocitrate lyase family YPC_0024 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YPC_0027 PF02574 Homocysteine S-methyltransferase YPC_0027 PF00809 Pterin binding enzyme YPC_0027 PF02965 Vitamin B12 dependent methionine synthase, activation domain YPC_0027 PF02607 B12 binding domain YPC_0027 PF02310 B12 binding domain YPC_0028 PF13332 Hemagglutinin repeat YPC_0028 PF05860 haemagglutination activity domain YPC_0029 PF17287 POTRA domain YPC_0029 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPC_0029 PF08479 POTRA domain, ShlB-type YPC_0030 PF17287 POTRA domain YPC_0030 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPC_0030 PF08479 POTRA domain, ShlB-type YPC_0032 PF01842 ACT domain YPC_0032 PF00696 Amino acid kinase family YPC_0033 PF00342 Phosphoglucose isomerase YPC_0034 PF06146 Phosphate-starvation-inducible E YPC_0035 PF00528 Binding-protein-dependent transport system inner membrane component YPC_0036 PF00528 Binding-protein-dependent transport system inner membrane component YPC_0036 PF14785 Maltose transport system permease protein MalF P2 domain YPC_0037 PF01547 Bacterial extracellular solute-binding protein YPC_0039 PF17912 MalK OB fold domain YPC_0039 PF00005 ABC transporter YPC_0040 PF02264 LamB porin YPC_0041 PF07148 Maltose operon periplasmic protein precursor (MalM) YPC_0044 PF05638 Type VI secretion system effector, Hcp YPC_0049 PF00665 Integrase core domain YPC_0049 PF02796 Helix-turn-helix domain of resolvase YPC_0050 PF01695 IstB-like ATP binding protein YPC_0052 PF13276 HTH-like domain YPC_0052 PF00665 Integrase core domain YPC_0052 PF13333 Integrase core domain YPC_0054 PF00455 DeoR C terminal sensor domain YPC_0054 PF08220 DeoR-like helix-turn-helix domain YPC_0055 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YPC_0055 PF01694 Rhomboid family YPC_0056 PF00581 Rhodanese-like domain YPC_0057 PF00196 Bacterial regulatory proteins, luxR family YPC_0057 PF17874 MalT-like TPR region YPC_0060 PF02446 4-alpha-glucanotransferase YPC_0062 PF01106 NifU-like domain YPC_0062 PF01521 Iron-sulphur cluster biosynthesis YPC_0063 PF00156 Phosphoribosyl transferase domain YPC_0064 PF00561 alpha/beta hydrolase fold YPC_0065 PF07338 Protein of unknown function (DUF1471) YPC_0066 PF09012 FeoC like transcriptional regulator YPC_0067 PF02421 Ferrous iron transport protein B YPC_0067 PF17910 FeoB cytosolic helical domain YPC_0067 PF07664 Ferrous iron transport protein B C terminus YPC_0067 PF07670 Nucleoside recognition YPC_0068 PF04023 FeoA domain YPC_0070 PF09371 Tex-like protein N-terminal domain YPC_0070 PF00575 S1 RNA binding domain YPC_0070 PF16921 Tex protein YqgF-like domain YPC_0070 PF17674 HHH domain YPC_0071 PF03449 Transcription elongation factor, N-terminal YPC_0071 PF01272 Transcription elongation factor, GreA/GreB, C-term YPC_0072 PF00486 Transcriptional regulatory protein, C terminal YPC_0072 PF00072 Response regulator receiver domain YPC_0073 PF00672 HAMP domain YPC_0073 PF00512 His Kinase A (phospho-acceptor) domain YPC_0073 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_0074 PF01293 Phosphoenolpyruvate carboxykinase YPC_0075 PF01430 Hsp33 protein YPC_0076 PF01479 S4 domain YPC_0077 PF13419 Haloacid dehalogenase-like hydrolase YPC_0078 PF07095 Intracellular growth attenuator protein IgaA YPC_0079 PF00293 NUDIX domain YPC_0080 PF00905 Penicillin binding protein transpeptidase domain YPC_0080 PF17092 Penicillin-binding protein OB-like domain YPC_0080 PF00912 Transglycosylase YPC_0086 PF03958 Bacterial type II/III secretion system short domain YPC_0086 PF00263 Bacterial type II and III secretion system protein YPC_0087 PF01202 Shikimate kinase YPC_0088 PF01761 3-dehydroquinate synthase YPC_0089 PF05036 Sporulation related domain YPC_0090 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPC_0091 PF00834 Ribulose-phosphate 3 epimerase family YPC_0092 PF13419 Haloacid dehalogenase-like hydrolase YPC_0093 PF00579 tRNA synthetases class I (W and Y) YPC_0094 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPC_0094 PF10414 Sirohaem synthase dimerisation region YPC_0094 PF14824 Sirohaem biosynthesis protein central YPC_0095 PF01226 Formate/nitrite transporter YPC_0097 PF13806 Rieske-like [2Fe-2S] domain YPC_0098 PF04324 BFD-like [2Fe-2S] binding domain YPC_0098 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPC_0098 PF18267 Rubredoxin NAD+ reductase C-terminal domain YPC_0098 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPC_0098 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPC_0100 PF07969 Amidohydrolase family YPC_0101 PF07690 Major Facilitator Superfamily YPC_0103 PF00356 Bacterial regulatory proteins, lacI family YPC_0104 PF11975 Family 4 glycosyl hydrolase C-terminal domain YPC_0104 PF02056 Family 4 glycosyl hydrolase YPC_0105 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPC_0106 PF05872 Bacterial protein of unknown function (DUF853) YPC_0107 PF00117 Glutamine amidotransferase class-I YPC_0108 PF00202 Aminotransferase class-III YPC_0110 PF12805 FUSC-like inner membrane protein yccS YPC_0111 PF13545 Crp-like helix-turn-helix domain YPC_0111 PF00027 Cyclic nucleotide-binding domain YPC_0112 PF02566 OsmC-like protein YPC_0114 PF00485 Phosphoribulokinase / Uridine kinase family YPC_0115 PF06794 Uncharacterised protein family (UPF0270) YPC_0116 PF00561 alpha/beta hydrolase fold YPC_0117 PF01810 LysE type translocator YPC_0119 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPC_0120 PF00005 ABC transporter YPC_0121 PF00528 Binding-protein-dependent transport system inner membrane component YPC_0122 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YPC_0124 PF00535 Glycosyl transferase family 2 YPC_0127 PF02525 Flavodoxin-like fold YPC_0128 PF02254 TrkA-N domain YPC_0128 PF00999 Sodium/hydrogen exchanger family YPC_0129 PF09526 Probable metal-binding protein (DUF2387) YPC_0130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPC_0132 PF04102 SlyX YPC_0133 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPC_0133 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPC_0134 PF13309 HTH domain YPC_0134 PF08348 YheO-like PAS domain YPC_0135 PF02635 DsrE/DsrF-like family YPC_0136 PF02635 DsrE/DsrF-like family YPC_0137 PF04077 DsrH like protein YPC_0138 PF00164 Ribosomal protein S12/S23 YPC_0139 PF00177 Ribosomal protein S7p/S5e YPC_0140 PF03144 Elongation factor Tu domain 2 YPC_0140 PF00679 Elongation factor G C-terminus YPC_0140 PF00009 Elongation factor Tu GTP binding domain YPC_0140 PF03764 Elongation factor G, domain IV YPC_0140 PF14492 Elongation Factor G, domain II YPC_0141 PF03144 Elongation factor Tu domain 2 YPC_0141 PF00009 Elongation factor Tu GTP binding domain YPC_0141 PF03143 Elongation factor Tu C-terminal domain YPC_0144 PF01797 Transposase IS200 like YPC_0145 PF04324 BFD-like [2Fe-2S] binding domain YPC_0146 PF00210 Ferritin-like domain YPC_0147 PF00338 Ribosomal protein S10p/S20e YPC_0148 PF00297 Ribosomal protein L3 YPC_0149 PF00573 Ribosomal protein L4/L1 family YPC_0150 PF00276 Ribosomal protein L23 YPC_0151 PF00181 Ribosomal Proteins L2, RNA binding domain YPC_0151 PF03947 Ribosomal Proteins L2, C-terminal domain YPC_0152 PF00203 Ribosomal protein S19 YPC_0153 PF00237 Ribosomal protein L22p/L17e YPC_0154 PF07650 KH domain YPC_0154 PF00189 Ribosomal protein S3, C-terminal domain YPC_0155 PF00252 Ribosomal protein L16p/L10e YPC_0156 PF00831 Ribosomal L29 protein YPC_0157 PF00366 Ribosomal protein S17 YPC_0158 PF00238 Ribosomal protein L14p/L23e YPC_0159 PF00467 KOW motif YPC_0159 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YPC_0160 PF00673 ribosomal L5P family C-terminus YPC_0160 PF00281 Ribosomal protein L5 YPC_0161 PF00253 Ribosomal protein S14p/S29e YPC_0162 PF00410 Ribosomal protein S8 YPC_0163 PF00347 Ribosomal protein L6 YPC_0164 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YPC_0165 PF00333 Ribosomal protein S5, N-terminal domain YPC_0165 PF03719 Ribosomal protein S5, C-terminal domain YPC_0166 PF00327 Ribosomal protein L30p/L7e YPC_0167 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YPC_0168 PF00344 SecY translocase YPC_0169 PF00444 Ribosomal protein L36 YPC_0170 PF00416 Ribosomal protein S13/S18 YPC_0171 PF00411 Ribosomal protein S11 YPC_0172 PF01479 S4 domain YPC_0172 PF00163 Ribosomal protein S4/S9 N-terminal domain YPC_0173 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YPC_0173 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YPC_0173 PF01000 RNA polymerase Rpb3/RpoA insert domain YPC_0174 PF01196 Ribosomal protein L17 YPC_0175 PF13411 MerR HTH family regulatory protein YPC_0176 PF03889 Alternative ribosome-rescue factor A YPC_0177 PF01741 Large-conductance mechanosensitive channel, MscL YPC_0178 PF02080 TrkA-C domain YPC_0178 PF02254 TrkA-N domain YPC_0179 PF01189 16S rRNA methyltransferase RsmB/F YPC_0179 PF01029 NusB family YPC_0180 PF00551 Formyl transferase YPC_0180 PF02911 Formyl transferase, C-terminal domain YPC_0181 PF01327 Polypeptide deformylase YPC_0182 PF17782 DprA winged helix domain YPC_0182 PF02481 DNA recombination-mediator protein A YPC_0183 PF04361 Protein of unknown function (DUF494) YPC_0184 PF01396 Topoisomerase DNA binding C4 zinc finger YPC_0185 PF01300 Telomere recombination YPC_0186 PF08501 Shikimate dehydrogenase substrate binding domain YPC_0186 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YPC_0186 PF01488 Shikimate / quinate 5-dehydrogenase YPC_0187 PF00132 Bacterial transferase hexapeptide (six repeats) YPC_0188 PF01695 IstB-like ATP binding protein YPC_0189 PF00665 Integrase core domain YPC_0189 PF02796 Helix-turn-helix domain of resolvase YPC_0190 PF00583 Acetyltransferase (GNAT) family YPC_0190 PF09500 Putative thioesterase (yiiD_Cterm) YPC_0191 PF05170 AsmA family YPC_0193 PF00860 Permease family YPC_0194 PF03616 Sodium/glutamate symporter YPC_0196 PF17191 RecG wedge domain YPC_0196 PF00270 DEAD/DEAH box helicase YPC_0196 PF00271 Helicase conserved C-terminal domain YPC_0197 PF12105 SpoU, rRNA methylase, C-terminal YPC_0197 PF00588 SpoU rRNA Methylase family YPC_0198 PF13291 ACT domain YPC_0198 PF04607 Region found in RelA / SpoT proteins YPC_0198 PF02824 TGS domain YPC_0199 PF01192 RNA polymerase Rpb6 YPC_0200 PF00625 Guanylate kinase YPC_0201 PF01653 NAD-dependent DNA ligase adenylation domain YPC_0201 PF03120 NAD-dependent DNA ligase OB-fold domain YPC_0202 PF03458 UPF0126 domain YPC_0203 PF03755 YicC-like family, N-terminal region YPC_0203 PF08340 Domain of unknown function (DUF1732) YPC_0204 PF01138 3' exoribonuclease family, domain 1 YPC_0204 PF03725 3' exoribonuclease family, domain 2 YPC_0205 PF00156 Phosphoribosyl transferase domain YPC_0206 PF00440 Bacterial regulatory proteins, tetR family YPC_0207 PF00692 dUTPase YPC_0208 PF02441 Flavoprotein YPC_0208 PF04127 DNA / pantothenate metabolism flavoprotein YPC_0209 PF04002 RadC-like JAB domain YPC_0210 PF00830 Ribosomal L28 family YPC_0211 PF00471 Ribosomal protein L33 YPC_0212 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YPC_0212 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YPC_0212 PF06827 Zinc finger found in FPG and IleRS YPC_0213 PF01467 Cytidylyltransferase-like YPC_0214 PF00535 Glycosyl transferase family 2 YPC_0215 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YPC_0216 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPC_0217 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPC_0218 PF01370 NAD dependent epimerase/dehydratase family YPC_0219 PF00155 Aminotransferase class I and II YPC_0220 PF08240 Alcohol dehydrogenase GroES-like domain YPC_0220 PF00107 Zinc-binding dehydrogenase YPC_0223 PF01551 Peptidase family M23 YPC_0224 PF01676 Metalloenzyme superfamily YPC_0224 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YPC_0225 PF00581 Rhodanese-like domain YPC_0226 PF00462 Glutaredoxin YPC_0227 PF02556 Preprotein translocase subunit SecB YPC_0228 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YPC_0228 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YPC_0230 PF06426 Serine acetyltransferase, N-terminal YPC_0230 PF00132 Bacterial transferase hexapeptide (six repeats) YPC_0231 PF00588 SpoU rRNA Methylase family YPC_0232 PF02805 Metal binding domain of Ada YPC_0232 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPC_0232 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPC_0232 PF12833 Helix-turn-helix domain YPC_0233 PF16527 Two-component sensor protein CpxA, periplasmic domain YPC_0233 PF00672 HAMP domain YPC_0233 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_0233 PF00512 His Kinase A (phospho-acceptor) domain YPC_0234 PF00072 Response regulator receiver domain YPC_0234 PF00486 Transcriptional regulatory protein, C terminal YPC_0235 PF07813 LTXXQ motif family protein YPC_0237 PF04754 Putative transposase, YhgA-like YPC_0239 PF01545 Cation efflux family YPC_0239 PF16916 Dimerisation domain of Zinc Transporter YPC_0240 PF00365 Phosphofructokinase YPC_0243 PF00939 Sodium:sulfate symporter transmembrane region YPC_0244 PF03737 Aldolase/RraA YPC_0245 PF02585 GlcNAc-PI de-N-acetylase YPC_0246 PF03466 LysR substrate binding domain YPC_0246 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_0247 PF00121 Triosephosphate isomerase YPC_0248 PF07305 Protein of unknown function (DUF1454) YPC_0249 PF05656 Protein of unknown function (DUF805) YPC_0250 PF00970 Oxidoreductase FAD-binding domain YPC_0250 PF00175 Oxidoreductase NAD-binding domain YPC_0251 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YPC_0252 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPC_0252 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPC_0256 PF06005 Cell division protein ZapB YPC_0260 PF03412 Peptidase C39 family YPC_0260 PF00005 ABC transporter YPC_0260 PF00664 ABC transporter transmembrane region YPC_0261 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPC_0261 PF00529 HlyD membrane-fusion protein of T1SS YPC_0267 PF03737 Aldolase/RraA YPC_0268 PF01040 UbiA prenyltransferase family YPC_0269 PF07724 AAA domain (Cdc48 subfamily) YPC_0269 PF00004 ATPase family associated with various cellular activities (AAA) YPC_0269 PF10431 C-terminal, D2-small domain, of ClpB protein YPC_0270 PF00227 Proteasome subunit YPC_0271 PF05036 Sporulation related domain YPC_0272 PF00356 Bacterial regulatory proteins, lacI family YPC_0273 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YPC_0273 PF00270 DEAD/DEAH box helicase YPC_0273 PF00271 Helicase conserved C-terminal domain YPC_0273 PF18074 Primosomal protein N C-terminal domain YPC_0273 PF17764 3′ DNA-binding domain (3′BD) YPC_0275 PF01197 Ribosomal protein L31 YPC_0276 PF05360 yiaA/B two helix domain YPC_0279 PF01340 Met Apo-repressor, MetJ YPC_0280 PF01053 Cys/Met metabolism PLP-dependent enzyme YPC_0281 PF01053 Cys/Met metabolism PLP-dependent enzyme YPC_0282 PF00696 Amino acid kinase family YPC_0282 PF03447 Homoserine dehydrogenase, NAD binding domain YPC_0282 PF00742 Homoserine dehydrogenase YPC_0283 PF02219 Methylenetetrahydrofolate reductase YPC_0284 PF13276 HTH-like domain YPC_0284 PF13333 Integrase core domain YPC_0284 PF00665 Integrase core domain YPC_0287 PF00311 Phosphoenolpyruvate carboxylase YPC_0288 PF01546 Peptidase family M20/M25/M40 YPC_0288 PF07687 Peptidase dimerisation domain YPC_0289 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPC_0289 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPC_0290 PF00696 Amino acid kinase family YPC_0291 PF00206 Lyase YPC_0291 PF14698 Argininosuccinate lyase C-terminal YPC_0295 PF00664 ABC transporter transmembrane region YPC_0295 PF00005 ABC transporter YPC_0296 PF00529 HlyD membrane-fusion protein of T1SS YPC_0297 PF03544 Gram-negative bacterial TonB protein C-terminal YPC_0298 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPC_0298 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPC_0299 PF00462 Glutaredoxin YPC_0299 PF08534 Redoxin YPC_0300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_0300 PF03466 LysR substrate binding domain YPC_0301 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPC_0301 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPC_0302 PF00440 Bacterial regulatory proteins, tetR family YPC_0303 PF07226 Protein of unknown function (DUF1422) YPC_0304 PF05958 tRNA (Uracil-5-)-methyltransferase YPC_0305 PF00593 TonB dependent receptor YPC_0305 PF07715 TonB-dependent Receptor Plug Domain YPC_0306 PF01177 Asp/Glu/Hydantoin racemase YPC_0315 PF13407 Periplasmic binding protein domain YPC_0316 PF00005 ABC transporter YPC_0319 PF03466 LysR substrate binding domain YPC_0319 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_0320 PF04219 Protein of unknown function, DUF YPC_0321 PF01078 Magnesium chelatase, subunit ChlI YPC_0321 PF13335 Magnesium chelatase, subunit ChlI C-terminal YPC_0322 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPC_0322 PF00205 Thiamine pyrophosphate enzyme, central domain YPC_0322 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPC_0324 PF01063 Amino-transferase class IV YPC_0325 PF00920 Dehydratase family YPC_0326 PF00291 Pyridoxal-phosphate dependent enzyme YPC_0326 PF00585 C-terminal regulatory domain of Threonine dehydratase YPC_0332 PF03466 LysR substrate binding domain YPC_0332 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_0333 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YPC_0333 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YPC_0338 PF01320 Colicin immunity protein / pyocin immunity protein YPC_0340 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPC_0340 PF02753 Pili assembly chaperone PapD, C-terminal domain YPC_0342 PF13953 PapC C-terminal domain YPC_0342 PF13954 PapC N-terminal domain YPC_0342 PF00577 Outer membrane usher protein YPC_0343 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPC_0343 PF02753 Pili assembly chaperone PapD, C-terminal domain YPC_0345 PF00872 Transposase, Mutator family YPC_0349 PF13361 UvrD-like helicase C-terminal domain YPC_0349 PF00580 UvrD/REP helicase N-terminal domain YPC_0353 PF00270 DEAD/DEAH box helicase YPC_0353 PF00271 Helicase conserved C-terminal domain YPC_0354 PF00085 Thioredoxin YPC_0355 PF07497 Rho termination factor, RNA-binding domain YPC_0355 PF07498 Rho termination factor, N-terminal domain YPC_0355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPC_0356 PF00953 Glycosyl transferase family 4 YPC_0357 PF02706 Chain length determinant protein YPC_0358 PF02350 UDP-N-acetylglucosamine 2-epimerase YPC_0359 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPC_0359 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPC_0359 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPC_0360 PF16363 GDP-mannose 4,6 dehydratase YPC_0361 PF00483 Nucleotidyl transferase YPC_0363 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPC_0364 PF01943 Polysaccharide biosynthesis protein YPC_0365 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YPC_0366 PF06899 WzyE protein, O-antigen assembly polymerase YPC_0367 PF03808 Glycosyl transferase WecB/TagA/CpsF family YPC_0368 PF00324 Amino acid permease YPC_0376 PF07219 HemY protein N-terminus YPC_0376 PF07719 Tetratricopeptide repeat YPC_0377 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YPC_0378 PF02602 Uroporphyrinogen-III synthase HemD YPC_0379 PF03900 Porphobilinogen deaminase, C-terminal domain YPC_0379 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YPC_0382 PF01295 Adenylate cyclase, class-I YPC_0382 PF12633 Adenylate cyclase NT domain YPC_0384 PF01491 Frataxin-like domain YPC_0385 PF13627 Prokaryotic lipoprotein-attachment site YPC_0386 PF01678 Diaminopimelate epimerase YPC_0387 PF04340 Protein of unknown function, DUF484 YPC_0388 PF00589 Phage integrase family YPC_0388 PF02899 Phage integrase, N-terminal SAM-like domain YPC_0389 PF13419 Haloacid dehalogenase-like hydrolase YPC_0390 PF00580 UvrD/REP helicase N-terminal domain YPC_0390 PF13361 UvrD-like helicase C-terminal domain YPC_0393 PF09370 Phosphoenolpyruvate hydrolase-like YPC_0395 PF01544 CorA-like Mg2+ transporter protein YPC_0396 PF00892 EamA-like transporter family YPC_0397 PF03061 Thioesterase superfamily YPC_0400 PF00270 DEAD/DEAH box helicase YPC_0400 PF09382 RQC domain YPC_0400 PF00271 Helicase conserved C-terminal domain YPC_0400 PF16124 RecQ zinc-binding YPC_0400 PF00570 HRDC domain YPC_0401 PF01810 LysE type translocator YPC_0402 PF01810 LysE type translocator YPC_0403 PF12146 Serine aminopeptidase, S33 YPC_0406 PF03009 Glycerophosphoryl diester phosphodiesterase family YPC_0411 PF08786 DcrB YPC_0412 PF02592 Putative vitamin uptake transporter YPC_0413 PF01206 Sulfurtransferase TusA YPC_0414 PF00403 Heavy-metal-associated domain YPC_0415 PF00403 Heavy-metal-associated domain YPC_0416 PF07947 YhhN family YPC_0419 PF06611 Protein of unknown function (DUF1145) YPC_0421 PF02881 SRP54-type protein, helical bundle domain YPC_0421 PF00448 SRP54-type protein, GTPase domain YPC_0421 PF02881 SRP54-type protein, helical bundle domain YPC_0421 PF00448 SRP54-type protein, GTPase domain YPC_0422 PF00005 ABC transporter YPC_0423 PF18075 FtsX extracellular domain YPC_0423 PF02687 FtsX-like permease family YPC_0425 PF04545 Sigma-70, region 4 YPC_0425 PF04542 Sigma-70 region 2 YPC_0425 PF00140 Sigma-70 factor, region 1.2 YPC_0427 PF01797 Transposase IS200 like YPC_0428 PF12568 Acetyltransferase (GNAT) domain, PanZ YPC_0430 PF13458 Periplasmic binding protein YPC_0431 PF02653 Branched-chain amino acid transport system / permease component YPC_0432 PF02653 Branched-chain amino acid transport system / permease component YPC_0432 PF11862 Domain of unknown function (DUF3382) YPC_0433 PF00005 ABC transporter YPC_0433 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPC_0434 PF00005 ABC transporter YPC_0443 PF13416 Bacterial extracellular solute-binding protein YPC_0444 PF00528 Binding-protein-dependent transport system inner membrane component YPC_0445 PF00528 Binding-protein-dependent transport system inner membrane component YPC_0446 PF17912 MalK OB fold domain YPC_0446 PF00005 ABC transporter YPC_0447 PF03009 Glycerophosphoryl diester phosphodiesterase family YPC_0448 PF03547 Membrane transport protein YPC_0449 PF00892 EamA-like transporter family YPC_0450 PF03466 LysR substrate binding domain YPC_0450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_0451 PF08267 Cobalamin-independent synthase, N-terminal domain YPC_0451 PF01717 Cobalamin-independent synthase, Catalytic domain YPC_0452 PF01738 Dienelactone hydrolase family YPC_0453 PF01048 Phosphorylase superfamily YPC_0455 PF02554 Carbon starvation protein CstA YPC_0455 PF13722 5TM C-terminal transporter carbon starvation CstA YPC_0456 PF09335 SNARE associated Golgi protein YPC_0457 PF02646 RmuC family YPC_0458 PF01209 ubiE/COQ5 methyltransferase family YPC_0459 PF02036 SCP-2 sterol transfer family YPC_0460 PF03109 ABC1 family YPC_0461 PF02416 mttA/Hcf106 family YPC_0463 PF00902 Sec-independent protein translocase protein (TatC) YPC_0464 PF01026 TatD related DNase YPC_0466 PF02796 Helix-turn-helix domain of resolvase YPC_0466 PF00665 Integrase core domain YPC_0467 PF01695 IstB-like ATP binding protein YPC_0468 PF01026 TatD related DNase YPC_0469 PF00490 Delta-aminolevulinic acid dehydratase YPC_0470 PF02357 Transcription termination factor nusG YPC_0471 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPC_0472 PF00175 Oxidoreductase NAD-binding domain YPC_0472 PF00970 Oxidoreductase FAD-binding domain YPC_0473 PF02803 Thiolase, C-terminal domain YPC_0473 PF00108 Thiolase, N-terminal domain YPC_0474 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPC_0474 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPC_0474 PF00378 Enoyl-CoA hydratase/isomerase YPC_0475 PF00557 Metallopeptidase family M24 YPC_0476 PF09186 Domain of unknown function (DUF1949) YPC_0476 PF01205 Uncharacterized protein family UPF0029 YPC_0478 PF01205 Uncharacterized protein family UPF0029 YPC_0478 PF09186 Domain of unknown function (DUF1949) YPC_0479 PF02386 Cation transport protein YPC_0480 PF12724 Flavodoxin domain YPC_0489 PF00485 Phosphoribulokinase / Uridine kinase family YPC_0490 PF13673 Acetyltransferase (GNAT) domain YPC_0492 PF00665 Integrase core domain YPC_0492 PF02796 Helix-turn-helix domain of resolvase YPC_0493 PF01695 IstB-like ATP binding protein YPC_0498 PF03143 Elongation factor Tu C-terminal domain YPC_0498 PF00009 Elongation factor Tu GTP binding domain YPC_0498 PF03144 Elongation factor Tu domain 2 YPC_0499 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YPC_0500 PF00467 KOW motif YPC_0500 PF02357 Transcription termination factor nusG YPC_0501 PF00298 Ribosomal protein L11, RNA binding domain YPC_0501 PF03946 Ribosomal protein L11, N-terminal domain YPC_0502 PF00687 Ribosomal protein L1p/L10e family YPC_0503 PF00466 Ribosomal protein L10 YPC_0504 PF16320 Ribosomal protein L7/L12 dimerisation domain YPC_0504 PF00542 Ribosomal protein L7/L12 C-terminal domain YPC_0505 PF04560 RNA polymerase Rpb2, domain 7 YPC_0505 PF04561 RNA polymerase Rpb2, domain 2 YPC_0505 PF00562 RNA polymerase Rpb2, domain 6 YPC_0505 PF10385 RNA polymerase beta subunit external 1 domain YPC_0505 PF04563 RNA polymerase beta subunit YPC_0505 PF04565 RNA polymerase Rpb2, domain 3 YPC_0506 PF04997 RNA polymerase Rpb1, domain 1 YPC_0506 PF00623 RNA polymerase Rpb1, domain 2 YPC_0506 PF04983 RNA polymerase Rpb1, domain 3 YPC_0506 PF05000 RNA polymerase Rpb1, domain 4 YPC_0506 PF04998 RNA polymerase Rpb1, domain 5 YPC_0507 PF01797 Transposase IS200 like YPC_0514 PF01964 Radical SAM ThiC family YPC_0514 PF13667 ThiC-associated domain YPC_0515 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPC_0516 PF09297 NADH pyrophosphatase zinc ribbon domain YPC_0516 PF00293 NUDIX domain YPC_0518 PF01208 Uroporphyrinogen decarboxylase (URO-D) YPC_0519 PF04493 Endonuclease V YPC_0520 PF04222 Protein of unknown function (DUF416) YPC_0522 PF00216 Bacterial DNA-binding protein YPC_0523 PF07356 Protein of unknown function (DUF1481) YPC_0524 PF02843 Phosphoribosylglycinamide synthetase, C domain YPC_0524 PF02844 Phosphoribosylglycinamide synthetase, N domain YPC_0524 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPC_0525 PF02142 MGS-like domain YPC_0525 PF01808 AICARFT/IMPCHase bienzyme YPC_0532 PF01527 Transposase YPC_0533 PF13683 Integrase core domain YPC_0533 PF13276 HTH-like domain YPC_0534 PF01695 IstB-like ATP binding protein YPC_0535 PF02796 Helix-turn-helix domain of resolvase YPC_0535 PF00665 Integrase core domain YPC_0536 PF00550 Phosphopantetheine attachment site YPC_0536 PF02801 Beta-ketoacyl synthase, C-terminal domain YPC_0536 PF00202 Aminotransferase class-III YPC_0536 PF00501 AMP-binding enzyme YPC_0536 PF13193 AMP-binding enzyme C-terminal domain YPC_0536 PF00668 Condensation domain YPC_0536 PF00109 Beta-ketoacyl synthase, N-terminal domain YPC_0536 PF16197 Ketoacyl-synthetase C-terminal extension YPC_0537 PF00593 TonB dependent receptor YPC_0537 PF07715 TonB-dependent Receptor Plug Domain YPC_0538 PF07687 Peptidase dimerisation domain YPC_0538 PF01546 Peptidase family M20/M25/M40 YPC_0539 PF03806 AbgT putative transporter family YPC_0541 PF14496 C-terminal novel E3 ligase, LRR-interacting YPC_0541 PF12468 Type III secretion system leucine rich repeat protein YPC_0542 PF14496 C-terminal novel E3 ligase, LRR-interacting YPC_0542 PF12468 Type III secretion system leucine rich repeat protein YPC_0542 PF14496 C-terminal novel E3 ligase, LRR-interacting YPC_0542 PF12468 Type III secretion system leucine rich repeat protein YPC_0544 PF12468 Type III secretion system leucine rich repeat protein YPC_0544 PF14496 C-terminal novel E3 ligase, LRR-interacting YPC_0548 PF07906 ShET2 enterotoxin, N-terminal region YPC_0549 PF00873 AcrB/AcrD/AcrF family YPC_0550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPC_0550 PF00529 HlyD membrane-fusion protein of T1SS YPC_0553 PF13188 PAS domain YPC_0553 PF03707 Bacterial signalling protein N terminal repeat YPC_0553 PF00990 Diguanylate cyclase, GGDEF domain YPC_0553 PF00563 EAL domain YPC_0554 PF13333 Integrase core domain YPC_0554 PF00665 Integrase core domain YPC_0554 PF13276 HTH-like domain YPC_0556 PF00312 Ribosomal protein S15 YPC_0557 PF09157 Pseudouridine synthase II TruB, C-terminal YPC_0557 PF01509 TruB family pseudouridylate synthase (N terminal domain) YPC_0557 PF16198 tRNA pseudouridylate synthase B C-terminal domain YPC_0558 PF02033 Ribosome-binding factor A YPC_0559 PF04760 Translation initiation factor IF-2, N-terminal region YPC_0559 PF08364 Bacterial translation initiation factor IF-2 associated region YPC_0559 PF11987 Translation-initiation factor 2 YPC_0559 PF03144 Elongation factor Tu domain 2 YPC_0559 PF00009 Elongation factor Tu GTP binding domain YPC_0560 PF08529 NusA N-terminal domain YPC_0560 PF00575 S1 RNA binding domain YPC_0560 PF13184 NusA-like KH domain YPC_0561 PF02576 RimP N-terminal domain YPC_0561 PF17384 RimP C-terminal SH3 domain YPC_0564 PF03840 Preprotein translocase SecG subunit YPC_0565 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPC_0565 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPC_0565 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPC_0565 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPC_0566 PF00809 Pterin binding enzyme YPC_0567 PF01434 Peptidase family M41 YPC_0567 PF06480 FtsH Extracellular YPC_0567 PF17862 AAA+ lid domain YPC_0567 PF00004 ATPase family associated with various cellular activities (AAA) YPC_0568 PF01728 FtsJ-like methyltransferase YPC_0569 PF01985 CRS1 / YhbY (CRM) domain YPC_0571 PF01272 Transcription elongation factor, GreA/GreB, C-term YPC_0571 PF03449 Transcription elongation factor, N-terminal YPC_0572 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YPC_0573 PF00486 Transcriptional regulatory protein, C terminal YPC_0573 PF00072 Response regulator receiver domain YPC_0574 PF00512 His Kinase A (phospho-acceptor) domain YPC_0574 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_0574 PF00672 HAMP domain YPC_0575 PF01018 GTP1/OBG YPC_0575 PF01926 50S ribosome-binding GTPase YPC_0576 PF00892 EamA-like transporter family YPC_0577 PF01016 Ribosomal L27 protein YPC_0578 PF00829 Ribosomal prokaryotic L21 protein YPC_0579 PF00348 Polyprenyl synthetase YPC_0581 PF13693 Winged helix-turn-helix DNA-binding YPC_0582 PF00056 lactate/malate dehydrogenase, NAD binding domain YPC_0582 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YPC_0583 PF02863 Arginine repressor, C-terminal domain YPC_0583 PF01316 Arginine repressor, DNA binding domain YPC_0586 PF01225 Mur ligase family, catalytic domain YPC_0586 PF02875 Mur ligase family, glutamate ligase domain YPC_0586 PF08245 Mur ligase middle domain YPC_0587 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YPC_0588 PF00719 Inorganic pyrophosphatase YPC_0589 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YPC_0592 PF07244 Surface antigen variable number repeat YPC_0592 PF01103 Surface antigen YPC_0592 PF17243 POTRA domain TamA domain 1 YPC_0593 PF01625 Peptide methionine sulfoxide reductase YPC_0594 PF01595 Cyclin M transmembrane N-terminal domain YPC_0594 PF03471 Transporter associated domain YPC_0594 PF00571 CBS domain YPC_0595 PF06526 Protein of unknown function (DUF1107) YPC_0596 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YPC_0597 PF00459 Inositol monophosphatase family YPC_0598 PF00149 Calcineurin-like phosphoesterase YPC_0598 PF02872 5'-nucleotidase, C-terminal domain YPC_0599 PF01814 Hemerythrin HHE cation binding domain YPC_0599 PF04405 Domain of Unknown function (DUF542) YPC_0600 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPC_0600 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPC_0601 PF04225 Opacity-associated protein A LysM-like domain YPC_0601 PF08525 Opacity-associated protein A N-terminal motif YPC_0603 PF01797 Transposase IS200 like YPC_0605 PF01281 Ribosomal protein L9, N-terminal domain YPC_0605 PF03948 Ribosomal protein L9, C-terminal domain YPC_0606 PF01084 Ribosomal protein S18 YPC_0607 PF00436 Single-strand binding protein family YPC_0608 PF01250 Ribosomal protein S6 YPC_0610 PF00326 Prolyl oligopeptidase family YPC_0611 PF00665 Integrase core domain YPC_0611 PF02796 Helix-turn-helix domain of resolvase YPC_0612 PF01695 IstB-like ATP binding protein YPC_0614 PF07338 Protein of unknown function (DUF1471) YPC_0615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPC_0615 PF18158 Adaptive response protein AidB N-terminal domain YPC_0615 PF02770 Acyl-CoA dehydrogenase, middle domain YPC_0617 PF00588 SpoU rRNA Methylase family YPC_0617 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPC_0619 PF17876 Cold shock domain YPC_0619 PF00575 S1 RNA binding domain YPC_0619 PF08461 Ribonuclease R winged-helix domain YPC_0619 PF00773 RNB domain YPC_0619 PF08206 Ribonuclease B OB domain YPC_0620 PF02082 Transcriptional regulator YPC_0621 PF00709 Adenylosuccinate synthetase YPC_0622 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) YPC_0623 PF01145 SPFH domain / Band 7 family YPC_0624 PF12221 Bacterial membrane protein N terminal YPC_0624 PF01145 SPFH domain / Band 7 family YPC_0625 PF01926 50S ribosome-binding GTPase YPC_0625 PF13167 GTP-binding GTPase N-terminal YPC_0625 PF16360 GTP-binding GTPase Middle Region YPC_0626 PF17209 Hfq protein YPC_0628 PF08676 MutL C terminal dimerisation domain YPC_0628 PF01119 DNA mismatch repair protein, C-terminal domain YPC_0629 PF01520 N-acetylmuramoyl-L-alanine amidase YPC_0630 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YPC_0631 PF01256 Carbohydrate kinase YPC_0631 PF03853 YjeF-related protein N-terminus YPC_0632 PF08331 Domain of unknown function (DUF1730) YPC_0636 PF00929 Exonuclease YPC_0637 PF03193 RsgA GTPase YPC_0638 PF02666 Phosphatidylserine decarboxylase YPC_0639 PF00924 Mechanosensitive ion channel YPC_0639 PF12795 Mechanosensitive ion channel porin domain YPC_0639 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPC_0640 PF00152 tRNA synthetases class II (D, K and N) YPC_0642 PF00890 FAD binding domain YPC_0642 PF02910 Fumarate reductase flavoprotein C-term YPC_0643 PF13183 4Fe-4S dicluster domain YPC_0643 PF13085 2Fe-2S iron-sulfur cluster binding domain YPC_0644 PF02300 Fumarate reductase subunit C YPC_0645 PF02313 Fumarate reductase subunit D YPC_0646 PF00893 Small Multidrug Resistance protein YPC_0647 PF08207 Elongation factor P (EF-P) KOW-like domain YPC_0647 PF09285 Elongation factor P, C-terminal YPC_0647 PF01132 Elongation factor P (EF-P) OB domain YPC_0648 PF04055 Radical SAM superfamily YPC_0649 PF13698 Domain of unknown function (DUF4156) YPC_0650 PF00118 TCP-1/cpn60 chaperonin family YPC_0651 PF00166 Chaperonin 10 Kd subunit YPC_0652 PF04186 FxsA cytoplasmic membrane protein YPC_0654 PF10415 Fumarase C C-terminus YPC_0654 PF00206 Lyase YPC_0655 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPC_0656 PF03091 CutA1 divalent ion tolerance protein YPC_0657 PF11412 Disulphide bond corrector protein DsbC YPC_0657 PF02683 Cytochrome C biogenesis protein transmembrane region YPC_0658 PF01568 Molydopterin dinucleotide binding domain YPC_0658 PF00384 Molybdopterin oxidoreductase YPC_0658 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPC_0659 PF13247 4Fe-4S dicluster domain YPC_0659 PF12800 4Fe-4S binding domain YPC_0660 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPC_0660 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPC_0660 PF13247 4Fe-4S dicluster domain YPC_0666 PF03400 IS1 transposase YPC_0668 PF06379 L-rhamnose-proton symport protein (RhaT) YPC_0670 PF12833 Helix-turn-helix domain YPC_0670 PF02311 AraC-like ligand binding domain YPC_0672 PF12833 Helix-turn-helix domain YPC_0672 PF02311 AraC-like ligand binding domain YPC_0674 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPC_0674 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPC_0675 PF06134 L-rhamnose isomerase (RhaA) YPC_0676 PF00596 Class II Aldolase and Adducin N-terminal domain YPC_0677 PF00465 Iron-containing alcohol dehydrogenase YPC_0678 PF05336 L-rhamnose mutarotase YPC_0679 PF00436 Single-strand binding protein family YPC_0680 PF00005 ABC transporter YPC_0680 PF17755 UvrA DNA-binding domain YPC_0680 PF17760 UvrA interaction domain YPC_0681 PF04237 YjbR YPC_0682 PF00155 Aminotransferase class I and II YPC_0683 PF00842 Alanine racemase, C-terminal domain YPC_0683 PF01168 Alanine racemase, N-terminal domain YPC_0684 PF00772 DnaB-like helicase N terminal domain YPC_0684 PF03796 DnaB-like helicase C terminal domain YPC_0685 PF08240 Alcohol dehydrogenase GroES-like domain YPC_0685 PF00107 Zinc-binding dehydrogenase YPC_0687 PF09583 Phage shock protein G (Phageshock_PspG) YPC_0688 PF01207 Dihydrouridine synthase (Dus) YPC_0689 PF01475 Ferric uptake regulator family YPC_0690 PF00717 Peptidase S24-like YPC_0690 PF01726 LexA DNA binding domain YPC_0691 PF01219 Prokaryotic diacylglycerol kinase YPC_0692 PF01553 Acyltransferase YPC_0693 PF01040 UbiA prenyltransferase family YPC_0694 PF04345 Chorismate lyase YPC_0695 PF12951 Passenger-associated-transport-repeat YPC_0697 PF08031 Berberine and berberine like YPC_0697 PF01565 FAD binding domain YPC_0702 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPC_0703 PF00577 Outer membrane usher protein YPC_0703 PF13954 PapC N-terminal domain YPC_0703 PF13953 PapC C-terminal domain YPC_0705 PF02342 TerD domain YPC_0706 PF02342 TerD domain YPC_0707 PF03741 Integral membrane protein TerC family YPC_0708 PF05099 Tellurite resistance protein TerB YPC_0709 PF02342 TerD domain YPC_0710 PF02342 TerD domain YPC_0714 PF11202 Phosphoribosyl transferase (PRTase) YPC_0714 PF15608 PELOTA RNA binding domain YPC_0718 PF04055 Radical SAM superfamily YPC_0719 PF06228 Haem utilisation ChuX/HutX YPC_0720 PF13460 NAD(P)H-binding YPC_0722 PF10636 Hemin uptake protein hemP YPC_0723 PF07715 TonB-dependent Receptor Plug Domain YPC_0723 PF00593 TonB dependent receptor YPC_0724 PF05171 Haemin-degrading HemS.ChuX domain YPC_0725 PF01497 Periplasmic binding protein YPC_0726 PF01032 FecCD transport family YPC_0727 PF00005 ABC transporter YPC_0728 PF01053 Cys/Met metabolism PLP-dependent enzyme YPC_0729 PF03222 Tryptophan/tyrosine permease family YPC_0730 PF03466 LysR substrate binding domain YPC_0730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_0731 PF01206 Sulfurtransferase TusA YPC_0732 PF04143 Sulphur transport YPC_0738 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPC_0741 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPC_0741 PF18269 T3SS EscN ATPase C-terminal domain YPC_0742 PF00771 FHIPEP family YPC_0745 PF01514 Secretory protein of YscJ/FliF family YPC_0749 PF14525 AraC-binding-like domain YPC_0749 PF12833 Helix-turn-helix domain YPC_0754 PF01627 Hpt domain YPC_0754 PF00672 HAMP domain YPC_0754 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_0754 PF00072 Response regulator receiver domain YPC_0754 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPC_0754 PF00512 His Kinase A (phospho-acceptor) domain YPC_0755 PF00072 Response regulator receiver domain YPC_0755 PF00196 Bacterial regulatory proteins, luxR family YPC_0756 PF00375 Sodium:dicarboxylate symporter family YPC_0757 PF13193 AMP-binding enzyme C-terminal domain YPC_0757 PF16177 Acetyl-coenzyme A synthetase N-terminus YPC_0757 PF00501 AMP-binding enzyme YPC_0758 PF04341 Protein of unknown function, DUF485 YPC_0759 PF00474 Sodium:solute symporter family YPC_0761 PF02796 Helix-turn-helix domain of resolvase YPC_0761 PF00665 Integrase core domain YPC_0762 PF01695 IstB-like ATP binding protein YPC_0763 PF00550 Phosphopantetheine attachment site YPC_0763 PF08242 Methyltransferase domain YPC_0763 PF00501 AMP-binding enzyme YPC_0763 PF00668 Condensation domain YPC_0764 PF00668 Condensation domain YPC_0764 PF08242 Methyltransferase domain YPC_0764 PF00550 Phosphopantetheine attachment site YPC_0764 PF00501 AMP-binding enzyme YPC_0765 PF13193 AMP-binding enzyme C-terminal domain YPC_0765 PF00501 AMP-binding enzyme YPC_0765 PF00668 Condensation domain YPC_0766 PF00501 AMP-binding enzyme YPC_0766 PF13193 AMP-binding enzyme C-terminal domain YPC_0766 PF00668 Condensation domain YPC_0766 PF00550 Phosphopantetheine attachment site YPC_0767 PF00501 AMP-binding enzyme YPC_0767 PF00550 Phosphopantetheine attachment site YPC_0767 PF00668 Condensation domain YPC_0767 PF08242 Methyltransferase domain YPC_0772 PF00975 Thioesterase domain YPC_0774 PF00664 ABC transporter transmembrane region YPC_0774 PF08021 Siderophore-interacting FAD-binding domain YPC_0774 PF00005 ABC transporter YPC_0774 PF04954 Siderophore-interacting protein YPC_0775 PF00005 ABC transporter YPC_0775 PF00664 ABC transporter transmembrane region YPC_0779 PF02447 GntP family permease YPC_0784 PF12951 Passenger-associated-transport-repeat YPC_0785 PF04717 Type VI secretion system, phage-baseplate injector YPC_0787 PF03527 RHS protein YPC_0787 PF05593 RHS Repeat YPC_0792 PF00939 Sodium:sulfate symporter transmembrane region YPC_0793 PF00356 Bacterial regulatory proteins, lacI family YPC_0795 PF13333 Integrase core domain YPC_0795 PF00665 Integrase core domain YPC_0795 PF13276 HTH-like domain YPC_0798 PF07715 TonB-dependent Receptor Plug Domain YPC_0798 PF00593 TonB dependent receptor YPC_0799 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPC_0800 PF04183 IucA / IucC family YPC_0800 PF06276 Ferric iron reductase FhuF-like transporter YPC_0802 PF06276 Ferric iron reductase FhuF-like transporter YPC_0802 PF04183 IucA / IucC family YPC_0803 PF04183 IucA / IucC family YPC_0803 PF06276 Ferric iron reductase FhuF-like transporter YPC_0810 PF00196 Bacterial regulatory proteins, luxR family YPC_0810 PF03472 Autoinducer binding domain YPC_0811 PF00765 Autoinducer synthase YPC_0812 PF02517 CPBP intramembrane metalloprotease YPC_0815 PF12759 InsA C-terminal domain YPC_0815 PF03811 InsA N-terminal domain YPC_0822 PF05736 OprF membrane domain YPC_0822 PF00691 OmpA family YPC_0824 PF17871 AAA lid domain YPC_0824 PF10431 C-terminal, D2-small domain, of ClpB protein YPC_0824 PF07724 AAA domain (Cdc48 subfamily) YPC_0824 PF00004 ATPase family associated with various cellular activities (AAA) YPC_0828 PF03811 InsA N-terminal domain YPC_0828 PF12759 InsA C-terminal domain YPC_0833 PF12759 InsA C-terminal domain YPC_0833 PF03811 InsA N-terminal domain YPC_0834 PF03400 IS1 transposase YPC_0836 PF02899 Phage integrase, N-terminal SAM-like domain YPC_0836 PF00589 Phage integrase family YPC_0839 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPC_0839 PF01276 Orn/Lys/Arg decarboxylase, major domain YPC_0839 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPC_0840 PF13407 Periplasmic binding protein domain YPC_0841 PF00005 ABC transporter YPC_0842 PF02653 Branched-chain amino acid transport system / permease component YPC_0843 PF07715 TonB-dependent Receptor Plug Domain YPC_0845 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YPC_0845 PF01464 Transglycosylase SLT domain YPC_0846 PF04362 Bacterial Fe(2+) trafficking YPC_0847 PF10576 Iron-sulfur binding domain of endonuclease III YPC_0847 PF14815 NUDIX domain YPC_0847 PF00730 HhH-GPD superfamily base excision DNA repair protein YPC_0847 PF00633 Helix-hairpin-helix motif YPC_0848 PF02390 Putative methyltransferase YPC_0849 PF04320 Protein with unknown function (DUF469) YPC_0850 PF04960 Glutaminase YPC_0853 PF12146 Serine aminopeptidase, S33 YPC_0853 PF11713 Peptidase C80 family YPC_0853 PF16671 Actin cross-linking domain YPC_0853 PF07634 RtxA repeat YPC_0853 PF11647 Membrane Localization Domain YPC_0854 PF06969 HemN C-terminal domain YPC_0854 PF04055 Radical SAM superfamily YPC_0855 PF01725 Ham1 family YPC_0856 PF02594 Uncharacterised ACR, YggU family COG1872 YPC_0857 PF02325 YGGT family YPC_0858 PF03807 NADP oxidoreductase coenzyme F420-dependent YPC_0858 PF14748 Pyrroline-5-carboxylate reductase dimerisation YPC_0859 PF01168 Alanine racemase, N-terminal domain YPC_0860 PF00437 Type II/IV secretion system protein YPC_0861 PF04371 Porphyromonas-type peptidyl-arginine deiminase YPC_0862 PF00795 Carbon-nitrogen hydrolase YPC_0863 PF03652 Holliday junction resolvase YPC_0864 PF02622 Uncharacterized ACR, COG1678 YPC_0865 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YPC_0865 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YPC_0866 PF04452 RNA methyltransferase YPC_0869 PF04231 Endonuclease I YPC_0870 PF10263 SprT-like family YPC_0870 PF17283 SprT-like zinc ribbon domain YPC_0871 PF00438 S-adenosylmethionine synthetase, N-terminal domain YPC_0871 PF02772 S-adenosylmethionine synthetase, central domain YPC_0871 PF02773 S-adenosylmethionine synthetase, C-terminal domain YPC_0873 PF17944 Arginine decarboxylase C-terminal helical extension YPC_0873 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPC_0873 PF17810 Arginine decarboxylase helical bundle domain YPC_0874 PF00355 Rieske [2Fe-2S] domain YPC_0876 PF01435 Peptidase family M48 YPC_0877 PF00456 Transketolase, thiamine diphosphate binding domain YPC_0877 PF02779 Transketolase, pyrimidine binding domain YPC_0877 PF02780 Transketolase, C-terminal domain YPC_0880 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPC_0880 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPC_0881 PF00162 Phosphoglycerate kinase YPC_0882 PF01116 Fructose-bisphosphate aldolase class-II YPC_0884 PF05552 Conserved TM helix YPC_0884 PF00924 Mechanosensitive ion channel YPC_0885 PF01810 LysE type translocator YPC_0886 PF04402 Protein of unknown function (DUF541) YPC_0887 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_0887 PF03466 LysR substrate binding domain YPC_0888 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPC_0889 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPC_0889 PF01842 ACT domain YPC_0889 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPC_0891 PF01812 5-formyltetrahydrofolate cyclo-ligase family YPC_0893 PF05164 Cell division protein ZapA YPC_0894 PF03695 Uncharacterised protein family (UPF0149) YPC_0895 PF00557 Metallopeptidase family M24 YPC_0895 PF05195 Aminopeptidase P, N-terminal domain YPC_0896 PF01494 FAD binding domain YPC_0897 PF01494 FAD binding domain YPC_0898 PF08669 Glycine cleavage T-protein C-terminal barrel domain YPC_0898 PF01571 Aminomethyltransferase folate-binding domain YPC_0899 PF01597 Glycine cleavage H-protein YPC_0900 PF02347 Glycine cleavage system P-protein YPC_0905 PF05658 Head domain of trimeric autotransporter adhesin YPC_0905 PF05662 Coiled stalk of trimeric autotransporter adhesin YPC_0905 PF13018 Extended Signal Peptide of Type V secretion system YPC_0905 PF03895 YadA-like membrane anchor domain YPC_0907 PF03006 Haemolysin-III related YPC_0909 PF01571 Aminomethyltransferase folate-binding domain YPC_0910 PF03937 Flavinator of succinate dehydrogenase YPC_0911 PF07254 Membrane-bound toxin component of toxin-antitoxin system YPC_0912 PF00486 Transcriptional regulatory protein, C terminal YPC_0912 PF00072 Response regulator receiver domain YPC_0913 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_0913 PF00512 His Kinase A (phospho-acceptor) domain YPC_0913 PF00672 HAMP domain YPC_0914 PF06123 Inner membrane protein CreD YPC_0915 PF00258 Flavodoxin YPC_0916 PF00589 Phage integrase family YPC_0916 PF02899 Phage integrase, N-terminal SAM-like domain YPC_0917 PF13098 Thioredoxin-like domain YPC_0917 PF10411 Disulfide bond isomerase protein N-terminus YPC_0918 PF01368 DHH family YPC_0918 PF02272 DHHA1 domain YPC_0918 PF17768 RecJ OB domain YPC_0920 PF01336 OB-fold nucleic acid binding domain YPC_0920 PF00152 tRNA synthetases class II (D, K and N) YPC_0922 PF13356 Arm DNA-binding domain YPC_0922 PF14659 Phage integrase, N-terminal SAM-like domain YPC_0922 PF00589 Phage integrase family YPC_0927 PF15723 Motility quorum-sensing regulator, toxin of MqsA YPC_0928 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA YPC_0948 PF03551 Transcriptional regulator PadR-like family YPC_0951 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPC_0953 PF13407 Periplasmic binding protein domain YPC_0954 PF02653 Branched-chain amino acid transport system / permease component YPC_0955 PF00005 ABC transporter YPC_0956 PF17912 MalK OB fold domain YPC_0956 PF00005 ABC transporter YPC_0957 PF13416 Bacterial extracellular solute-binding protein YPC_0958 PF00528 Binding-protein-dependent transport system inner membrane component YPC_0959 PF00528 Binding-protein-dependent transport system inner membrane component YPC_0960 PF07745 Glycosyl hydrolase family 53 YPC_0961 PF02449 Beta-galactosidase YPC_0961 PF08533 Beta-galactosidase C-terminal domain YPC_0961 PF08532 Beta-galactosidase trimerisation domain YPC_0962 PF02378 Phosphotransferase system, EIIC YPC_0962 PF00367 phosphotransferase system, EIIB YPC_0963 PF02264 LamB porin YPC_0964 PF00356 Bacterial regulatory proteins, lacI family YPC_0967 PF13802 Galactose mutarotase-like YPC_0967 PF17137 Domain of unknown function (DUF5110) YPC_0967 PF16338 Domain of unknown function (DUF4968) YPC_0967 PF01055 Glycosyl hydrolases family 31 YPC_0971 PF00356 Bacterial regulatory proteins, lacI family YPC_0973 PF01116 Fructose-bisphosphate aldolase class-II YPC_0976 PF00884 Sulfatase YPC_0977 PF04055 Radical SAM superfamily YPC_0977 PF13186 Iron-sulfur cluster-binding domain YPC_0981 PF01979 Amidohydrolase family YPC_0982 PF03610 PTS system fructose IIA component YPC_0985 PF03830 PTS system sorbose subfamily IIB component YPC_0986 PF01380 SIS domain YPC_0987 PF08013 Tagatose 6 phosphate kinase YPC_0988 PF00455 DeoR C terminal sensor domain YPC_0988 PF08220 DeoR-like helix-turn-helix domain YPC_0991 PF00884 Sulfatase YPC_0992 PF01797 Transposase IS200 like YPC_0993 PF00665 Integrase core domain YPC_0993 PF02796 Helix-turn-helix domain of resolvase YPC_0994 PF01695 IstB-like ATP binding protein YPC_0996 PF09092 Lyase, N terminal YPC_0996 PF09093 Lyase, catalytic YPC_0996 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YPC_0996 PF02278 Polysaccharide lyase family 8, super-sandwich domain YPC_1002 PF00484 Carbonic anhydrase YPC_1005 PF03958 Bacterial type II/III secretion system short domain YPC_1005 PF00263 Bacterial type II and III secretion system protein YPC_1008 PF00482 Type II secretion system (T2SS), protein F YPC_1009 PF08334 Type II secretion system (T2SS), protein G YPC_1009 PF07963 Prokaryotic N-terminal methylation motif YPC_1011 PF07963 Prokaryotic N-terminal methylation motif YPC_1011 PF02501 Type II secretion system (T2SS), protein I YPC_1016 PF06750 Bacterial Peptidase A24 N-terminal domain YPC_1016 PF01478 Type IV leader peptidase family YPC_1021 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPC_1021 PF02203 Tar ligand binding domain homologue YPC_1021 PF00672 HAMP domain YPC_1024 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_1024 PF03466 LysR substrate binding domain YPC_1025 PF07690 Major Facilitator Superfamily YPC_1026 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_1026 PF03466 LysR substrate binding domain YPC_1027 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YPC_1027 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPC_1028 PF00356 Bacterial regulatory proteins, lacI family YPC_1029 PF00384 Molybdopterin oxidoreductase YPC_1029 PF01568 Molydopterin dinucleotide binding domain YPC_1033 PF07690 Major Facilitator Superfamily YPC_1037 PF00248 Aldo/keto reductase family YPC_1039 PF02976 DNA mismatch repair enzyme MutH YPC_1040 PF00293 NUDIX domain YPC_1041 PF05524 PEP-utilising enzyme, N-terminal YPC_1041 PF00391 PEP-utilising enzyme, mobile domain YPC_1041 PF02896 PEP-utilising enzyme, TIM barrel domain YPC_1041 PF01590 GAF domain YPC_1042 PF02896 PEP-utilising enzyme, TIM barrel domain YPC_1042 PF01590 GAF domain YPC_1042 PF05524 PEP-utilising enzyme, N-terminal YPC_1042 PF00391 PEP-utilising enzyme, mobile domain YPC_1043 PF01790 Prolipoprotein diacylglyceryl transferase YPC_1044 PF00303 Thymidylate synthase YPC_1049 PF17946 RecC C-terminal domain YPC_1050 PF00675 Insulinase (Peptidase family M16) YPC_1050 PF16187 Middle or third domain of peptidase_M16 YPC_1050 PF05193 Peptidase M16 inactive domain YPC_1053 PF00696 Amino acid kinase family YPC_1053 PF00583 Acetyltransferase (GNAT) family YPC_1054 PF11741 AMIN domain YPC_1054 PF01520 N-acetylmuramoyl-L-alanine amidase YPC_1057 PF03562 MltA specific insert domain YPC_1057 PF06725 3D domain YPC_1058 PF00899 ThiF family YPC_1059 PF02657 Fe-S metabolism associated domain YPC_1060 PF00266 Aminotransferase class-V YPC_1063 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_1063 PF03466 LysR substrate binding domain YPC_1064 PF04241 Protein of unknown function (DUF423) YPC_1065 PF18125 RlmM ferredoxin-like domain YPC_1065 PF01728 FtsJ-like methyltransferase YPC_1066 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPC_1066 PF01367 5'-3' exonuclease, C-terminal SAM fold YPC_1067 PF03641 Possible lysine decarboxylase YPC_1067 PF11892 Domain of unknown function (DUF3412) YPC_1067 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YPC_1068 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YPC_1068 PF14489 QueF-like protein YPC_1069 PF07348 Syd protein (SUKH-2) YPC_1071 PF01797 Transposase IS200 like YPC_1072 PF04287 tRNA pseudouridine synthase C YPC_1073 PF00849 RNA pseudouridylate synthase YPC_1074 PF00258 Flavodoxin YPC_1075 PF11944 Protein of unknown function (DUF3461) YPC_1079 PF00132 Bacterial transferase hexapeptide (six repeats) YPC_1079 PF14602 Hexapeptide repeat of succinyl-transferase YPC_1079 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YPC_1080 PF01909 Nucleotidyltransferase domain YPC_1080 PF01842 ACT domain YPC_1080 PF08335 GlnD PII-uridylyltransferase YPC_1080 PF01966 HD domain YPC_1081 PF00557 Metallopeptidase family M24 YPC_1083 PF00318 Ribosomal protein S2 YPC_1084 PF00889 Elongation factor TS YPC_1085 PF00696 Amino acid kinase family YPC_1086 PF01765 Ribosome recycling factor YPC_1087 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YPC_1087 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPC_1087 PF13288 DXP reductoisomerase C-terminal domain YPC_1088 PF01255 Putative undecaprenyl diphosphate synthase YPC_1090 PF02163 Peptidase family M50 YPC_1090 PF17820 PDZ domain YPC_1091 PF01103 Surface antigen YPC_1091 PF07244 Surface antigen variable number repeat YPC_1092 PF03938 Outer membrane protein (OmpH-like) YPC_1093 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YPC_1093 PF00132 Bacterial transferase hexapeptide (six repeats) YPC_1094 PF07977 FabA-like domain YPC_1095 PF00132 Bacterial transferase hexapeptide (six repeats) YPC_1095 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YPC_1096 PF02684 Lipid-A-disaccharide synthetase YPC_1097 PF01351 Ribonuclease HII YPC_1098 PF02811 PHP domain YPC_1098 PF01336 OB-fold nucleic acid binding domain YPC_1098 PF14579 Helix-hairpin-helix motif YPC_1098 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPC_1098 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPC_1099 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YPC_1100 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPC_1101 PF01171 PP-loop family YPC_1101 PF09179 TilS substrate binding domain YPC_1101 PF11734 TilS substrate C-terminal domain YPC_1102 PF00034 Cytochrome c YPC_1103 PF07073 Modulator of Rho-dependent transcription termination (ROF) YPC_1104 PF06786 Uncharacterised protein family (UPF0253) YPC_1105 PF07152 YaeQ protein YPC_1106 PF00472 RF-1 domain YPC_1107 PF04170 NlpE N-terminal domain YPC_1107 PF17185 NlpE C-terminal OB domain YPC_1108 PF04073 Aminoacyl-tRNA editing domain YPC_1108 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPC_1108 PF03129 Anticodon binding domain YPC_1109 PF01980 tRNA-methyltransferase O YPC_1109 PF18389 TrmO C-terminal domain YPC_1110 PF16358 RcsF lipoprotein YPC_1111 PF03180 NLPA lipoprotein YPC_1112 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1113 PF00005 ABC transporter YPC_1113 PF09383 NIL domain YPC_1121 PF00248 Aldo/keto reductase family YPC_1123 PF03372 Endonuclease/Exonuclease/phosphatase family YPC_1124 PF01464 Transglycosylase SLT domain YPC_1124 PF01476 LysM domain YPC_1125 PF00753 Metallo-beta-lactamase superfamily YPC_1125 PF16123 Hydroxyacylglutathione hydrolase C-terminus YPC_1126 PF08241 Methyltransferase domain YPC_1127 PF00075 RNase H YPC_1128 PF00929 Exonuclease YPC_1130 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YPC_1133 PF01695 IstB-like ATP binding protein YPC_1134 PF02796 Helix-turn-helix domain of resolvase YPC_1134 PF00665 Integrase core domain YPC_1136 PF05973 Phage derived protein Gp49-like (DUF891) YPC_1149 PF13356 Arm DNA-binding domain YPC_1149 PF00589 Phage integrase family YPC_1154 PF01668 SmpB protein YPC_1155 PF03364 Polyketide cyclase / dehydrase and lipid transport YPC_1156 PF03658 RnfH family Ubiquitin YPC_1157 PF04355 SmpA / OmlA family YPC_1158 PF02463 RecF/RecN/SMC N terminal domain YPC_1159 PF01513 ATP-NAD kinase YPC_1160 PF01025 GrpE YPC_1161 PF00285 Citrate synthase, C-terminal domain YPC_1163 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPC_1164 PF00890 FAD binding domain YPC_1164 PF02910 Fumarate reductase flavoprotein C-term YPC_1165 PF13085 2Fe-2S iron-sulfur cluster binding domain YPC_1166 PF00676 Dehydrogenase E1 component YPC_1166 PF16870 2-oxoglutarate dehydrogenase C-terminal YPC_1166 PF02779 Transketolase, pyrimidine binding domain YPC_1166 PF16078 2-oxoglutarate dehydrogenase N-terminus YPC_1167 PF02817 e3 binding domain YPC_1167 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPC_1167 PF00364 Biotin-requiring enzyme YPC_1168 PF00549 CoA-ligase YPC_1168 PF08442 ATP-grasp domain YPC_1169 PF00549 CoA-ligase YPC_1169 PF02629 CoA binding domain YPC_1170 PF01654 Cytochrome bd terminal oxidase subunit I YPC_1171 PF02322 Cytochrome bd terminal oxidase subunit II YPC_1172 PF08173 Membrane bound YbgT-like protein YPC_1173 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) YPC_1174 PF03061 Thioesterase superfamily YPC_1175 PF01618 MotA/TolQ/ExbB proton channel family YPC_1176 PF02472 Biopolymer transport protein ExbD/TolR YPC_1177 PF06519 TolA C-terminal YPC_1177 PF06519 TolA C-terminal YPC_1178 PF04052 TolB amino-terminal domain YPC_1178 PF07676 WD40-like Beta Propeller Repeat YPC_1179 PF00691 OmpA family YPC_1180 PF16331 TolA binding protein trimerisation YPC_1180 PF13174 Tetratricopeptide repeat YPC_1184 PF02445 Quinolinate synthetase A protein YPC_1185 PF04973 Nicotinamide mononucleotide transporter YPC_1186 PF01545 Cation efflux family YPC_1187 PF00793 DAHP synthetase I family YPC_1188 PF00300 Histidine phosphatase superfamily (branch 1) YPC_1190 PF01263 Aldose 1-epimerase YPC_1192 PF08544 GHMP kinases C terminal YPC_1192 PF10509 Galactokinase galactose-binding signature YPC_1192 PF00288 GHMP kinases N terminal domain YPC_1193 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YPC_1193 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YPC_1194 PF16363 GDP-mannose 4,6 dehydratase YPC_1197 PF00005 ABC transporter YPC_1198 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_1198 PF03459 TOBE domain YPC_1200 PF10766 Multidrug efflux pump-associated protein AcrZ YPC_1202 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1203 PF03459 TOBE domain YPC_1203 PF00005 ABC transporter YPC_1205 PF10282 Lactonase, 7-bladed beta-propeller YPC_1206 PF00202 Aminotransferase class-III YPC_1207 PF06968 Biotin and Thiamin Synthesis associated domain YPC_1207 PF04055 Radical SAM superfamily YPC_1208 PF00155 Aminotransferase class I and II YPC_1209 PF08241 Methyltransferase domain YPC_1212 PF02151 UvrB/uvrC motif YPC_1212 PF12344 Ultra-violet resistance protein B YPC_1212 PF17757 UvrB interaction domain YPC_1212 PF04851 Type III restriction enzyme, res subunit YPC_1212 PF00271 Helicase conserved C-terminal domain YPC_1214 PF09905 DNA-binding protein VF530 YPC_1215 PF01933 Uncharacterised protein family UPF0052 YPC_1216 PF04055 Radical SAM superfamily YPC_1216 PF06463 Molybdenum Cofactor Synthesis C YPC_1217 PF01967 MoaC family YPC_1218 PF02597 ThiS family YPC_1219 PF02391 MoaE protein YPC_1220 PF01027 Inhibitor of apoptosis-promoting Bax1 YPC_1223 PF01797 Transposase IS200 like YPC_1226 PF00171 Aldehyde dehydrogenase family YPC_1227 PF13977 BetI-type transcriptional repressor, C-terminal YPC_1227 PF00440 Bacterial regulatory proteins, tetR family YPC_1228 PF02028 BCCT, betaine/carnitine/choline family transporter YPC_1230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_1230 PF03466 LysR substrate binding domain YPC_1232 PF01048 Phosphorylase superfamily YPC_1236 PF13801 Heavy-metal resistance YPC_1237 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_1237 PF00512 His Kinase A (phospho-acceptor) domain YPC_1238 PF00158 Sigma-54 interaction domain YPC_1238 PF00072 Response regulator receiver domain YPC_1238 PF02954 Bacterial regulatory protein, Fis family YPC_1239 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPC_1240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_1240 PF03466 LysR substrate binding domain YPC_1246 PF00005 ABC transporter YPC_1247 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPC_1248 PF09209 Tetracyclin repressor-like, C-terminal domain YPC_1248 PF00440 Bacterial regulatory proteins, tetR family YPC_1249 PF00270 DEAD/DEAH box helicase YPC_1249 PF00271 Helicase conserved C-terminal domain YPC_1250 PF01548 Transposase YPC_1250 PF02371 Transposase IS116/IS110/IS902 family YPC_1251 PF13592 Winged helix-turn helix YPC_1251 PF13358 DDE superfamily endonuclease YPC_1258 PF00872 Transposase, Mutator family YPC_1261 PF08543 Phosphomethylpyrimidine kinase YPC_1265 PF00781 Diacylglycerol kinase catalytic domain YPC_1268 PF07411 Domain of unknown function (DUF1508) YPC_1269 PF00486 Transcriptional regulatory protein, C terminal YPC_1269 PF00072 Response regulator receiver domain YPC_1270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_1270 PF00512 His Kinase A (phospho-acceptor) domain YPC_1270 PF00672 HAMP domain YPC_1271 PF07690 Major Facilitator Superfamily YPC_1274 PF13533 Biotin-lipoyl like YPC_1275 PF00005 ABC transporter YPC_1275 PF08402 TOBE domain YPC_1276 PF00392 Bacterial regulatory proteins, gntR family YPC_1276 PF00155 Aminotransferase class I and II YPC_1277 PF00202 Aminotransferase class-III YPC_1279 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1280 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1281 PF00012 Hsp70 protein YPC_1282 PF03448 MgtE intracellular N domain YPC_1282 PF01769 Divalent cation transporter YPC_1282 PF00571 CBS domain YPC_1284 PF02541 Ppx/GppA phosphatase family YPC_1285 PF02503 Polyphosphate kinase middle domain YPC_1285 PF13089 Polyphosphate kinase N-terminal domain YPC_1285 PF17941 Polyphosphate kinase C-terminal domain 1 YPC_1285 PF13090 Polyphosphate kinase C-terminal domain 2 YPC_1289 PF00005 ABC transporter YPC_1293 PF13302 Acetyltransferase (GNAT) domain YPC_1294 PF00551 Formyl transferase YPC_1295 PF00586 AIR synthase related protein, N-terminal domain YPC_1295 PF02769 AIR synthase related protein, C-terminal domain YPC_1298 PF01797 Transposase IS200 like YPC_1299 PF00308 Bacterial dnaA protein YPC_1300 PF03960 ArsC family YPC_1301 PF07720 Tetratricopeptide repeat YPC_1301 PF01435 Peptidase family M48 YPC_1302 PF01594 AI-2E family transporter YPC_1307 PF00578 AhpC/TSA family YPC_1308 PF01842 ACT domain YPC_1309 PF00701 Dihydrodipicolinate synthetase family YPC_1310 PF06804 NlpB/DapX lipoprotein YPC_1312 PF01797 Transposase IS200 like YPC_1313 PF01259 SAICAR synthetase YPC_1314 PF04228 Putative neutral zinc metallopeptidase YPC_1315 PF04284 Protein of unknown function (DUF441) YPC_1316 PF08351 Domain of unknown function (DUF1726) YPC_1316 PF13718 GNAT acetyltransferase 2 YPC_1316 PF05127 Helicase YPC_1316 PF17176 tRNA-binding domain YPC_1317 PF13980 Uncharacterised protein family (UPF0370) YPC_1318 PF02557 D-alanyl-D-alanine carboxypeptidase YPC_1319 PF07687 Peptidase dimerisation domain YPC_1319 PF01546 Peptidase family M20/M25/M40 YPC_1320 PF03960 ArsC family YPC_1324 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1325 PF08402 TOBE domain YPC_1325 PF00005 ABC transporter YPC_1326 PF00884 Sulfatase YPC_1327 PF04055 Radical SAM superfamily YPC_1327 PF13186 Iron-sulfur cluster-binding domain YPC_1329 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPC_1333 PF00873 AcrB/AcrD/AcrF family YPC_1336 PF00072 Response regulator receiver domain YPC_1336 PF00196 Bacterial regulatory proteins, luxR family YPC_1337 PF13187 4Fe-4S dicluster domain YPC_1337 PF12800 4Fe-4S binding domain YPC_1337 PF00037 4Fe-4S binding domain YPC_1338 PF03927 NapD protein YPC_1339 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPC_1339 PF00384 Molybdopterin oxidoreductase YPC_1339 PF01568 Molydopterin dinucleotide binding domain YPC_1339 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPC_1341 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YPC_1342 PF03264 NapC/NirT cytochrome c family, N-terminal region YPC_1343 PF00293 NUDIX domain YPC_1344 PF00390 Malic enzyme, N-terminal domain YPC_1344 PF01515 Phosphate acetyl/butaryl transferase YPC_1344 PF03949 Malic enzyme, NAD binding domain YPC_1345 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YPC_1346 PF01218 Coproporphyrinogen III oxidase YPC_1347 PF00583 Acetyltransferase (GNAT) family YPC_1350 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPC_1350 PF03797 Autotransporter beta-domain YPC_1350 PF13018 Extended Signal Peptide of Type V secretion system YPC_1350 PF03212 Pertactin YPC_1352 PF04076 Bacterial OB fold (BOF) protein YPC_1353 PF06572 Protein of unknown function (DUF1131) YPC_1354 PF04261 Dyp-type peroxidase family YPC_1355 PF00701 Dihydrodipicolinate synthetase family YPC_1356 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YPC_1357 PF12468 Type III secretion system leucine rich repeat protein YPC_1358 PF00480 ROK family YPC_1359 PF04074 YhcH/YjgK/YiaL YPC_1361 PF01380 SIS domain YPC_1361 PF01418 Helix-turn-helix domain, rpiR family YPC_1362 PF07690 Major Facilitator Superfamily YPC_1365 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1366 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1367 PF00005 ABC transporter YPC_1368 PF00291 Pyridoxal-phosphate dependent enzyme YPC_1370 PF00486 Transcriptional regulatory protein, C terminal YPC_1370 PF00072 Response regulator receiver domain YPC_1371 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_1371 PF00672 HAMP domain YPC_1371 PF00512 His Kinase A (phospho-acceptor) domain YPC_1374 PF00155 Aminotransferase class I and II YPC_1376 PF00557 Metallopeptidase family M24 YPC_1376 PF05195 Aminopeptidase P, N-terminal domain YPC_1378 PF00474 Sodium:solute symporter family YPC_1379 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPC_1379 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPC_1380 PF12704 MacB-like periplasmic core domain YPC_1380 PF00005 ABC transporter YPC_1380 PF02687 FtsX-like permease family YPC_1381 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPC_1382 PF00486 Transcriptional regulatory protein, C terminal YPC_1382 PF00072 Response regulator receiver domain YPC_1383 PF16527 Two-component sensor protein CpxA, periplasmic domain YPC_1383 PF00512 His Kinase A (phospho-acceptor) domain YPC_1383 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_1383 PF00672 HAMP domain YPC_1387 PF01695 IstB-like ATP binding protein YPC_1388 PF02796 Helix-turn-helix domain of resolvase YPC_1388 PF00665 Integrase core domain YPC_1390 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPC_1391 PF02896 PEP-utilising enzyme, TIM barrel domain YPC_1391 PF00391 PEP-utilising enzyme, mobile domain YPC_1391 PF05524 PEP-utilising enzyme, N-terminal YPC_1392 PF00381 PTS HPr component phosphorylation site YPC_1393 PF00291 Pyridoxal-phosphate dependent enzyme YPC_1395 PF04354 ZipA, C-terminal FtsZ-binding domain YPC_1396 PF03120 NAD-dependent DNA ligase OB-fold domain YPC_1396 PF01653 NAD-dependent DNA ligase adenylation domain YPC_1396 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YPC_1396 PF00533 BRCA1 C Terminus (BRCT) domain YPC_1396 PF12826 Helix-hairpin-helix motif YPC_1397 PF12843 Putative quorum-sensing-regulated virulence factor YPC_1403 PF01797 Transposase IS200 like YPC_1405 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPC_1409 PF07662 Na+ dependent nucleoside transporter C-terminus YPC_1409 PF01773 Na+ dependent nucleoside transporter N-terminus YPC_1409 PF07670 Nucleoside recognition YPC_1410 PF01566 Natural resistance-associated macrophage protein YPC_1414 PF00248 Aldo/keto reductase family YPC_1416 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_1416 PF03466 LysR substrate binding domain YPC_1418 PF02685 Glucokinase YPC_1419 PF07350 Protein of unknown function (DUF1479) YPC_1420 PF00155 Aminotransferase class I and II YPC_1421 PF01292 Prokaryotic cytochrome b561 YPC_1428 PF02613 Nitrate reductase delta subunit YPC_1429 PF04976 DMSO reductase anchor subunit (DmsC) YPC_1430 PF13247 4Fe-4S dicluster domain YPC_1430 PF12800 4Fe-4S binding domain YPC_1431 PF01568 Molydopterin dinucleotide binding domain YPC_1431 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPC_1431 PF00384 Molybdopterin oxidoreductase YPC_1436 PF00005 ABC transporter YPC_1437 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1438 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1440 PF13406 Transglycosylase SLT domain YPC_1452 PF07724 AAA domain (Cdc48 subfamily) YPC_1452 PF10431 C-terminal, D2-small domain, of ClpB protein YPC_1452 PF00004 ATPase family associated with various cellular activities (AAA) YPC_1452 PF17871 AAA lid domain YPC_1453 PF16970 Type-1 fimbrial protein, A YPC_1454 PF02753 Pili assembly chaperone PapD, C-terminal domain YPC_1454 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPC_1455 PF00577 Outer membrane usher protein YPC_1455 PF13953 PapC C-terminal domain YPC_1455 PF13954 PapC N-terminal domain YPC_1456 PF00872 Transposase, Mutator family YPC_1457 PF00577 Outer membrane usher protein YPC_1457 PF13953 PapC C-terminal domain YPC_1457 PF13954 PapC N-terminal domain YPC_1465 PF02796 Helix-turn-helix domain of resolvase YPC_1465 PF00665 Integrase core domain YPC_1466 PF01695 IstB-like ATP binding protein YPC_1471 PF04717 Type VI secretion system, phage-baseplate injector YPC_1477 PF03831 PhnA domain YPC_1477 PF08274 PhnA Zinc-Ribbon YPC_1480 PF04011 LemA family YPC_1485 PF00005 ABC transporter YPC_1486 PF03379 CcmB protein YPC_1487 PF01578 Cytochrome C assembly protein YPC_1488 PF04995 Heme exporter protein D (CcmD) YPC_1491 PF08534 Redoxin YPC_1494 PF04333 MlaA lipoprotein YPC_1495 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPC_1496 PF04175 Protein of unknown function (DUF406) YPC_1497 PF02803 Thiolase, C-terminal domain YPC_1497 PF00108 Thiolase, N-terminal domain YPC_1498 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPC_1498 PF00378 Enoyl-CoA hydratase/isomerase YPC_1498 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPC_1499 PF00300 Histidine phosphatase superfamily (branch 1) YPC_1500 PF01713 Smr domain YPC_1501 PF05175 Methyltransferase small domain YPC_1502 PF01264 Chorismate synthase YPC_1503 PF03411 Penicillin-insensitive murein endopeptidase YPC_1504 PF01925 Sulfite exporter TauE/SafE YPC_1506 PF04315 Elongation factor P hydroxylase YPC_1507 PF08891 YfcL protein YPC_1508 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YPC_1508 PF01266 FAD dependent oxidoreductase YPC_1509 PF02801 Beta-ketoacyl synthase, C-terminal domain YPC_1509 PF00109 Beta-ketoacyl synthase, N-terminal domain YPC_1511 PF01177 Asp/Glu/Hydantoin racemase YPC_1513 PF00419 Fimbrial protein YPC_1515 PF00892 EamA-like transporter family YPC_1517 PF11890 Domain of unknown function (DUF3410) YPC_1517 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPC_1517 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPC_1518 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPC_1518 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPC_1519 PF01416 tRNA pseudouridine synthase YPC_1520 PF09335 SNARE associated Golgi protein YPC_1521 PF01039 Carboxyl transferase domain YPC_1521 PF17848 Acetyl-coA carboxylase zinc finger domain YPC_1522 PF02875 Mur ligase family, glutamate ligase domain YPC_1522 PF08245 Mur ligase middle domain YPC_1523 PF05036 Sporulation related domain YPC_1524 PF02674 Colicin V production protein YPC_1525 PF00156 Phosphoribosyl transferase domain YPC_1526 PF02441 Flavoprotein YPC_1529 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPC_1530 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1531 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1532 PF00005 ABC transporter YPC_1533 PF01370 NAD dependent epimerase/dehydratase family YPC_1533 PF08338 Domain of unknown function (DUF1731) YPC_1535 PF12850 Calcineurin-like phosphoesterase superfamily domain YPC_1537 PF00293 NUDIX domain YPC_1538 PF03611 PTS system sugar-specific permease component YPC_1539 PF00872 Transposase, Mutator family YPC_1542 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPC_1543 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPC_1543 PF00356 Bacterial regulatory proteins, lacI family YPC_1545 PF07085 DRTGG domain YPC_1545 PF01515 Phosphate acetyl/butaryl transferase YPC_1547 PF00871 Acetokinase family YPC_1549 PF04217 Protein of unknown function, DUF412 YPC_1550 PF03887 YfbU domain YPC_1551 PF13419 Haloacid dehalogenase-like hydrolase YPC_1552 PF03600 Citrate transporter YPC_1552 PF02080 TrkA-C domain YPC_1556 PF00155 Aminotransferase class I and II YPC_1558 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_1558 PF03466 LysR substrate binding domain YPC_1560 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YPC_1561 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YPC_1562 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YPC_1562 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YPC_1564 PF10531 SLBB domain YPC_1564 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPC_1564 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPC_1565 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPC_1565 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPC_1565 PF01568 Molydopterin dinucleotide binding domain YPC_1565 PF00384 Molybdopterin oxidoreductase YPC_1566 PF00146 NADH dehydrogenase YPC_1567 PF12838 4Fe-4S dicluster domain YPC_1568 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YPC_1569 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YPC_1570 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YPC_1570 PF00361 Proton-conducting membrane transporter YPC_1571 PF00361 Proton-conducting membrane transporter YPC_1572 PF00361 Proton-conducting membrane transporter YPC_1574 PF04074 YhcH/YjgK/YiaL YPC_1575 PF01202 Shikimate kinase YPC_1576 PF00106 short chain dehydrogenase YPC_1580 PF00356 Bacterial regulatory proteins, lacI family YPC_1582 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPC_1582 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPC_1584 PF07690 Major Facilitator Superfamily YPC_1585 PF03928 Haem-degrading YPC_1586 PF00920 Dehydratase family YPC_1590 PF05957 Bacterial protein of unknown function (DUF883) YPC_1593 PF00425 chorismate binding enzyme YPC_1594 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPC_1594 PF16582 Middle domain of thiamine pyrophosphate YPC_1594 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPC_1595 PF12697 Alpha/beta hydrolase family YPC_1596 PF00378 Enoyl-CoA hydratase/isomerase YPC_1597 PF13378 Enolase C-terminal domain-like YPC_1598 PF13193 AMP-binding enzyme C-terminal domain YPC_1598 PF00501 AMP-binding enzyme YPC_1599 PF02885 Glycosyl transferase family, helical bundle domain YPC_1602 PF07338 Protein of unknown function (DUF1471) YPC_1603 PF05971 RNA methyltransferase YPC_1606 PF01695 IstB-like ATP binding protein YPC_1607 PF02796 Helix-turn-helix domain of resolvase YPC_1607 PF00665 Integrase core domain YPC_1608 PF08447 PAS fold YPC_1608 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPC_1608 PF13426 PAS domain YPC_1609 PF00005 ABC transporter YPC_1610 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1611 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPC_1613 PF00210 Ferritin-like domain YPC_1617 PF00892 EamA-like transporter family YPC_1619 PF13505 Outer membrane protein beta-barrel domain YPC_1623 PF00107 Zinc-binding dehydrogenase YPC_1623 PF08240 Alcohol dehydrogenase GroES-like domain YPC_1624 PF13407 Periplasmic binding protein domain YPC_1625 PF00005 ABC transporter YPC_1626 PF02653 Branched-chain amino acid transport system / permease component YPC_1627 PF00356 Bacterial regulatory proteins, lacI family YPC_1628 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_1628 PF03466 LysR substrate binding domain YPC_1629 PF00180 Isocitrate/isopropylmalate dehydrogenase YPC_1631 PF02028 BCCT, betaine/carnitine/choline family transporter YPC_1634 PF00175 Oxidoreductase NAD-binding domain YPC_1634 PF00111 2Fe-2S iron-sulfur cluster binding domain YPC_1634 PF00970 Oxidoreductase FAD-binding domain YPC_1635 PF17287 POTRA domain YPC_1635 PF08479 POTRA domain, ShlB-type YPC_1635 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPC_1636 PF05860 haemagglutination activity domain YPC_1636 PF04829 Pre-toxin domain with VENN motif YPC_1636 PF13332 Hemagglutinin repeat YPC_1636 PF13018 Extended Signal Peptide of Type V secretion system YPC_1637 PF13332 Hemagglutinin repeat YPC_1637 PF13018 Extended Signal Peptide of Type V secretion system YPC_1637 PF05860 haemagglutination activity domain YPC_1637 PF04829 Pre-toxin domain with VENN motif YPC_1640 PF13332 Hemagglutinin repeat YPC_1640 PF05860 haemagglutination activity domain YPC_1640 PF04829 Pre-toxin domain with VENN motif YPC_1640 PF13018 Extended Signal Peptide of Type V secretion system YPC_1645 PF13332 Hemagglutinin repeat YPC_1645 PF04829 Pre-toxin domain with VENN motif YPC_1645 PF05860 haemagglutination activity domain YPC_1645 PF05594 Haemagluttinin repeat YPC_1645 PF15526 Novel toxin 21 YPC_1646 PF13332 Hemagglutinin repeat YPC_1646 PF04829 Pre-toxin domain with VENN motif YPC_1646 PF05860 haemagglutination activity domain YPC_1646 PF05594 Haemagluttinin repeat YPC_1646 PF15526 Novel toxin 21 YPC_1648 PF00005 ABC transporter YPC_1648 PF17912 MalK OB fold domain YPC_1649 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPC_1649 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPC_1649 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPC_1649 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPC_1650 PF00356 Bacterial regulatory proteins, lacI family YPC_1652 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1653 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1654 PF04041 beta-1,4-mannooligosaccharide phosphorylase YPC_1658 PF00924 Mechanosensitive ion channel YPC_1659 PF01867 CRISPR associated protein Cas1 YPC_1661 PF09611 CRISPR-associated protein (Cas_Csy1) YPC_1662 PF09614 CRISPR-associated protein (Cas_Csy2) YPC_1663 PF09615 CRISPR-associated protein (Cas_Csy3) YPC_1664 PF09618 CRISPR-associated protein (Cas_Csy4) YPC_1665 PF00248 Aldo/keto reductase family YPC_1668 PF00083 Sugar (and other) transporter YPC_1669 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_1669 PF03466 LysR substrate binding domain YPC_1670 PF00196 Bacterial regulatory proteins, luxR family YPC_1670 PF03472 Autoinducer binding domain YPC_1671 PF00765 Autoinducer synthase YPC_1678 PF01594 AI-2E family transporter YPC_1680 PF00196 Bacterial regulatory proteins, luxR family YPC_1681 PF01266 FAD dependent oxidoreductase YPC_1682 PF00872 Transposase, Mutator family YPC_1683 PF13991 BssS protein family YPC_1684 PF06183 DinI-like family YPC_1685 PF01979 Amidohydrolase family YPC_1686 PF03992 Antibiotic biosynthesis monooxygenase YPC_1687 PF00872 Transposase, Mutator family YPC_1688 PF12111 Polyribonucleotide phosphorylase C terminal YPC_1688 PF10150 Ribonuclease E/G family YPC_1688 PF00575 S1 RNA binding domain YPC_1689 PF01479 S4 domain YPC_1689 PF00849 RNA pseudouridylate synthase YPC_1690 PF02545 Maf-like protein YPC_1691 PF02620 Large ribosomal RNA subunit accumulation protein YceD YPC_1692 PF01783 Ribosomal L32p protein family YPC_1693 PF02504 Fatty acid synthesis protein YPC_1694 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPC_1694 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPC_1695 PF00698 Acyl transferase domain YPC_1697 PF00550 Phosphopantetheine attachment site YPC_1698 PF02801 Beta-ketoacyl synthase, C-terminal domain YPC_1698 PF00109 Beta-ketoacyl synthase, N-terminal domain YPC_1701 PF01063 Amino-transferase class IV YPC_1703 PF02618 YceG-like family YPC_1704 PF02223 Thymidylate kinase YPC_1705 PF09115 DNA polymerase III, delta subunit, C terminal YPC_1706 PF01026 TatD related DNase YPC_1707 PF02378 Phosphotransferase system, EIIC YPC_1707 PF00367 phosphotransferase system, EIIB YPC_1710 PF08501 Shikimate dehydrogenase substrate binding domain YPC_1711 PF01230 HIT domain YPC_1712 PF07233 Protein of unknown function (DUF1425) YPC_1713 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPC_1713 PF13036 Peptidoglycan-synthase activator LpoB YPC_1714 PF01636 Phosphotransferase enzyme family YPC_1715 PF00933 Glycosyl hydrolase family 3 N terminal domain YPC_1716 PF05728 Uncharacterised protein family (UPF0227) YPC_1717 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPC_1722 PF00872 Transposase, Mutator family YPC_1723 PF05433 Glycine zipper 2TM domain YPC_1724 PF17757 UvrB interaction domain YPC_1724 PF00270 DEAD/DEAH box helicase YPC_1724 PF02559 CarD-like/TRCF domain YPC_1724 PF00271 Helicase conserved C-terminal domain YPC_1724 PF03461 TRCF domain YPC_1726 PF12704 MacB-like periplasmic core domain YPC_1726 PF02687 FtsX-like permease family YPC_1727 PF00005 ABC transporter YPC_1728 PF02687 FtsX-like permease family YPC_1728 PF12704 MacB-like periplasmic core domain YPC_1729 PF00480 ROK family YPC_1730 PF00480 ROK family YPC_1732 PF02146 Sir2 family YPC_1733 PF01546 Peptidase family M20/M25/M40 YPC_1733 PF07687 Peptidase dimerisation domain YPC_1734 PF08007 Cupin superfamily protein YPC_1735 PF08918 PhoQ Sensor YPC_1735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_1736 PF00072 Response regulator receiver domain YPC_1736 PF00486 Transcriptional regulatory protein, C terminal YPC_1738 PF00206 Lyase YPC_1738 PF08328 Adenylosuccinate lyase C-terminal YPC_1739 PF04356 Protein of unknown function (DUF489) YPC_1741 PF00293 NUDIX domain YPC_1742 PF00849 RNA pseudouridylate synthase YPC_1743 PF00180 Isocitrate/isopropylmalate dehydrogenase YPC_1744 PF00356 Bacterial regulatory proteins, lacI family YPC_1744 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPC_1746 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPC_1746 PF08447 PAS fold YPC_1747 PF05368 NmrA-like family YPC_1748 PF01638 HxlR-like helix-turn-helix YPC_1752 PF00328 Histidine phosphatase superfamily (branch 2) YPC_1753 PF00328 Histidine phosphatase superfamily (branch 2) YPC_1755 PF14001 YdfZ protein YPC_1757 PF01037 Lrp/AsnC ligand binding domain YPC_1757 PF13404 AsnC-type helix-turn-helix domain YPC_1759 PF10777 Inner membrane protein YlaC YPC_1760 PF00550 Phosphopantetheine attachment site YPC_1760 PF08659 KR domain YPC_1760 PF00107 Zinc-binding dehydrogenase YPC_1760 PF02801 Beta-ketoacyl synthase, C-terminal domain YPC_1760 PF00698 Acyl transferase domain YPC_1760 PF00109 Beta-ketoacyl synthase, N-terminal domain YPC_1760 PF16197 Ketoacyl-synthetase C-terminal extension YPC_1760 PF08240 Alcohol dehydrogenase GroES-like domain YPC_1760 PF14765 Polyketide synthase dehydratase YPC_1761 PF00703 Glycosyl hydrolases family 2 YPC_1761 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YPC_1761 PF16353 Domain of unknown function(DUF4981) YPC_1761 PF02929 Beta galactosidase small chain YPC_1761 PF02837 Glycosyl hydrolases family 2, sugar binding domain YPC_1762 PF00313 'Cold-shock' DNA-binding domain YPC_1763 PF10781 Dextransucrase DSRB YPC_1766 PF02308 MgtC family YPC_1767 PF00690 Cation transporter/ATPase, N-terminus YPC_1767 PF00689 Cation transporting ATPase, C-terminus YPC_1768 PF00690 Cation transporter/ATPase, N-terminus YPC_1768 PF00689 Cation transporting ATPase, C-terminus YPC_1771 PF05280 Flagellar transcriptional activator (FlhC) YPC_1772 PF01618 MotA/TolQ/ExbB proton channel family YPC_1773 PF00691 OmpA family YPC_1773 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPC_1774 PF02895 Signal transducing histidine kinase, homodimeric domain YPC_1774 PF01627 Hpt domain YPC_1774 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_1774 PF09078 CheY binding YPC_1774 PF01584 CheW-like domain YPC_1775 PF01584 CheW-like domain YPC_1776 PF07690 Major Facilitator Superfamily YPC_1777 PF01042 Endoribonuclease L-PSP YPC_1779 PF08348 YheO-like PAS domain YPC_1779 PF13309 HTH domain YPC_1780 PF12951 Passenger-associated-transport-repeat YPC_1783 PF02203 Tar ligand binding domain homologue YPC_1783 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPC_1783 PF00672 HAMP domain YPC_1784 PF02203 Tar ligand binding domain homologue YPC_1784 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPC_1784 PF00672 HAMP domain YPC_1785 PF03705 CheR methyltransferase, all-alpha domain YPC_1785 PF01739 CheR methyltransferase, SAM binding domain YPC_1786 PF00072 Response regulator receiver domain YPC_1786 PF01339 CheB methylesterase YPC_1787 PF00072 Response regulator receiver domain YPC_1788 PF04344 Chemotaxis phosphatase, CheZ YPC_1791 PF01510 N-acetylmuramoyl-L-alanine amidase YPC_1792 PF03895 YadA-like membrane anchor domain YPC_1792 PF05658 Head domain of trimeric autotransporter adhesin YPC_1792 PF05662 Coiled stalk of trimeric autotransporter adhesin YPC_1792 PF13018 Extended Signal Peptide of Type V secretion system YPC_1793 PF13018 Extended Signal Peptide of Type V secretion system YPC_1793 PF03895 YadA-like membrane anchor domain YPC_1793 PF05662 Coiled stalk of trimeric autotransporter adhesin YPC_1793 PF05658 Head domain of trimeric autotransporter adhesin YPC_1795 PF00842 Alanine racemase, C-terminal domain YPC_1795 PF01168 Alanine racemase, N-terminal domain YPC_1800 PF01695 IstB-like ATP binding protein YPC_1801 PF00665 Integrase core domain YPC_1801 PF02796 Helix-turn-helix domain of resolvase YPC_1802 PF00465 Iron-containing alcohol dehydrogenase YPC_1802 PF00171 Aldehyde dehydrogenase family YPC_1803 PF01914 MarC family integral membrane protein YPC_1804 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPC_1805 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1806 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1806 PF12911 N-terminal TM domain of oligopeptide transport permease C YPC_1807 PF00005 ABC transporter YPC_1807 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPC_1808 PF00005 ABC transporter YPC_1808 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPC_1810 PF04269 Protein of unknown function, DUF440 YPC_1811 PF13396 Phospholipase_D-nuclease N-terminal YPC_1811 PF13091 PLD-like domain YPC_1814 PF13505 Outer membrane protein beta-barrel domain YPC_1818 PF03795 YCII-related domain YPC_1819 PF03544 Gram-negative bacterial TonB protein C-terminal YPC_1820 PF00872 Transposase, Mutator family YPC_1821 PF03061 Thioesterase superfamily YPC_1822 PF04279 Intracellular septation protein A YPC_1828 PF03922 OmpW family YPC_1831 PF00290 Tryptophan synthase alpha chain YPC_1832 PF00291 Pyridoxal-phosphate dependent enzyme YPC_1833 PF00218 Indole-3-glycerol phosphate synthase YPC_1833 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YPC_1834 PF02885 Glycosyl transferase family, helical bundle domain YPC_1834 PF00591 Glycosyl transferase family, a/b domain YPC_1835 PF00117 Glutamine amidotransferase class-I YPC_1836 PF00425 chorismate binding enzyme YPC_1836 PF04715 Anthranilate synthase component I, N terminal region YPC_1838 PF02811 PHP domain YPC_1840 PF01300 Telomere recombination YPC_1841 PF00849 RNA pseudouridylate synthase YPC_1841 PF01479 S4 domain YPC_1842 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YPC_1843 PF00106 short chain dehydrogenase YPC_1844 PF01343 Peptidase family S49 YPC_1844 PF08496 Peptidase family S49 N-terminal YPC_1846 PF10692 Protein of unknown function (DUF2498) YPC_1848 PF01751 Toprim domain YPC_1848 PF01131 DNA topoisomerase YPC_1848 PF01396 Topoisomerase DNA binding C4 zinc finger YPC_1848 PF08272 Topoisomerase I zinc-ribbon-like YPC_1849 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_1849 PF03466 LysR substrate binding domain YPC_1851 PF00330 Aconitase family (aconitate hydratase) YPC_1851 PF00694 Aconitase C-terminal domain YPC_1852 PF00925 GTP cyclohydrolase II YPC_1853 PF01569 PAP2 superfamily YPC_1854 PF06305 Lipopolysaccharide assembly protein A domain YPC_1855 PF18073 Rubredoxin metal binding domain YPC_1857 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YPC_1858 PF01253 Translation initiation factor SUI1 YPC_1859 PF05433 Glycine zipper 2TM domain YPC_1860 PF00596 Class II Aldolase and Adducin N-terminal domain YPC_1862 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPC_1863 PF04328 Selenoprotein, putative YPC_1864 PF13722 5TM C-terminal transporter carbon starvation CstA YPC_1864 PF02554 Carbon starvation protein CstA YPC_1865 PF17876 Cold shock domain YPC_1865 PF00575 S1 RNA binding domain YPC_1865 PF00773 RNB domain YPC_1865 PF08206 Ribonuclease B OB domain YPC_1866 PF07690 Major Facilitator Superfamily YPC_1867 PF01370 NAD dependent epimerase/dehydratase family YPC_1868 PF10576 Iron-sulfur binding domain of endonuclease III YPC_1868 PF00633 Helix-hairpin-helix motif YPC_1868 PF00730 HhH-GPD superfamily base excision DNA repair protein YPC_1871 PF03116 NQR2, RnfD, RnfE family YPC_1872 PF06445 GyrI-like small molecule binding domain YPC_1872 PF12833 Helix-turn-helix domain YPC_1873 PF10531 SLBB domain YPC_1873 PF13375 RnfC Barrel sandwich hybrid domain YPC_1873 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPC_1873 PF13237 4Fe-4S dicluster domain YPC_1875 PF04060 Putative Fe-S cluster YPC_1876 PF02508 Rnf-Nqr subunit, membrane protein YPC_1877 PF10754 Protein of unknown function (DUF2569) YPC_1879 PF03412 Peptidase C39 family YPC_1879 PF00005 ABC transporter YPC_1879 PF00664 ABC transporter transmembrane region YPC_1880 PF00664 ABC transporter transmembrane region YPC_1880 PF03412 Peptidase C39 family YPC_1880 PF00005 ABC transporter YPC_1881 PF13533 Biotin-lipoyl like YPC_1883 PF00005 ABC transporter YPC_1883 PF00664 ABC transporter transmembrane region YPC_1883 PF03412 Peptidase C39 family YPC_1884 PF11762 L-arabinose isomerase C-terminal domain YPC_1884 PF02610 L-arabinose isomerase YPC_1885 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPC_1886 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPC_1887 PF00005 ABC transporter YPC_1888 PF02653 Branched-chain amino acid transport system / permease component YPC_1889 PF02311 AraC-like ligand binding domain YPC_1889 PF12833 Helix-turn-helix domain YPC_1890 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPC_1890 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPC_1891 PF13593 SBF-like CPA transporter family (DUF4137) YPC_1894 PF06097 Bacterial protein of unknown function (DUF945) YPC_1895 PF01238 Phosphomannose isomerase type I YPC_1896 PF10415 Fumarase C C-terminus YPC_1896 PF00206 Lyase YPC_1897 PF05472 DNA replication terminus site-binding protein (Ter protein) YPC_1898 PF07690 Major Facilitator Superfamily YPC_1899 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_1899 PF03466 LysR substrate binding domain YPC_1900 PF00480 ROK family YPC_1903 PF00654 Voltage gated chloride channel YPC_1904 PF00356 Bacterial regulatory proteins, lacI family YPC_1906 PF13407 Periplasmic binding protein domain YPC_1907 PF09084 NMT1/THI5 like YPC_1908 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1909 PF00005 ABC transporter YPC_1910 PF01048 Phosphorylase superfamily YPC_1910 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YPC_1919 PF01842 ACT domain YPC_1920 PF13419 Haloacid dehalogenase-like hydrolase YPC_1922 PF00245 Alkaline phosphatase YPC_1923 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPC_1923 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPC_1924 PF13545 Crp-like helix-turn-helix domain YPC_1924 PF00027 Cyclic nucleotide-binding domain YPC_1925 PF00582 Universal stress protein family YPC_1928 PF02233 NAD(P) transhydrogenase beta subunit YPC_1929 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YPC_1929 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YPC_1929 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YPC_1931 PF07338 Protein of unknown function (DUF1471) YPC_1932 PF13520 Amino acid permease YPC_1934 PF00486 Transcriptional regulatory protein, C terminal YPC_1934 PF00072 Response regulator receiver domain YPC_1935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_1935 PF00672 HAMP domain YPC_1935 PF00512 His Kinase A (phospho-acceptor) domain YPC_1936 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YPC_1939 PF14431 YwqJ-like deaminase YPC_1939 PF18807 Tripartite Tc toxins repeat YPC_1943 PF01292 Prokaryotic cytochrome b561 YPC_1948 PF00089 Trypsin YPC_1951 PF00270 DEAD/DEAH box helicase YPC_1951 PF00271 Helicase conserved C-terminal domain YPC_1951 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YPC_1951 PF11898 Domain of unknown function (DUF3418) YPC_1951 PF04408 Helicase associated domain (HA2) YPC_1952 PF02525 Flavodoxin-like fold YPC_1953 PF04198 Putative sugar-binding domain YPC_1953 PF00325 Bacterial regulatory proteins, crp family YPC_1954 PF08125 Mannitol dehydrogenase C-terminal domain YPC_1954 PF01232 Mannitol dehydrogenase Rossmann domain YPC_1955 PF07027 Protein of unknown function (DUF1318) YPC_1956 PF13617 YnbE-like lipoprotein YPC_1957 PF11739 Dicarboxylate transport YPC_1958 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPC_1958 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPC_1959 PF03724 META domain YPC_1960 PF03891 Domain of unknown function (DUF333) YPC_1961 PF02308 MgtC family YPC_1962 PF00893 Small Multidrug Resistance protein YPC_1963 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YPC_1963 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YPC_1963 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YPC_1963 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPC_1963 PF10371 Domain of unknown function YPC_1964 PF01171 PP-loop family YPC_1965 PF07859 alpha/beta hydrolase fold YPC_1965 PF13472 GDSL-like Lipase/Acylhydrolase family YPC_1968 PF01544 CorA-like Mg2+ transporter protein YPC_1969 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPC_1970 PF00246 Zinc carboxypeptidase YPC_1971 PF13378 Enolase C-terminal domain-like YPC_1971 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPC_1972 PF08534 Redoxin YPC_1974 PF01797 Transposase IS200 like YPC_1975 PF00158 Sigma-54 interaction domain YPC_1975 PF18024 Helix-turn-helix domain YPC_1978 PF05128 Domain of unknown function (DUF697) YPC_1979 PF04317 YcjX-like family, DUF463 YPC_1981 PF04024 PspC domain YPC_1982 PF06667 Phage shock protein B YPC_1983 PF04012 PspA/IM30 family YPC_1984 PF00158 Sigma-54 interaction domain YPC_1984 PF02954 Bacterial regulatory protein, Fis family YPC_1987 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPC_1988 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1989 PF00528 Binding-protein-dependent transport system inner membrane component YPC_1989 PF12911 N-terminal TM domain of oligopeptide transport permease C YPC_1994 PF00854 POT family YPC_1995 PF04893 Yip1 domain YPC_1996 PF11656 YjbD family (DUF3811) YPC_1997 PF02798 Glutathione S-transferase, N-terminal domain YPC_1997 PF00043 Glutathione S-transferase, C-terminal domain YPC_1998 PF08543 Phosphomethylpyrimidine kinase YPC_1999 PF01479 S4 domain YPC_1999 PF00579 tRNA synthetases class I (W and Y) YPC_2000 PF01243 Pyridoxamine 5'-phosphate oxidase YPC_2000 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YPC_2001 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YPC_2002 PF03702 Anhydro-N-acetylmuramic acid kinase YPC_2004 PF05433 Glycine zipper 2TM domain YPC_2005 PF01047 MarR family YPC_2006 PF08019 Phosphoethanolamine transferase EptA/EptB YPC_2006 PF00884 Sulfatase YPC_2007 PF00440 Bacterial regulatory proteins, tetR family YPC_2007 PF16925 Tetracyclin repressor-like, C-terminal domain YPC_2009 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPC_2010 PF18807 Tripartite Tc toxins repeat YPC_2010 PF14431 YwqJ-like deaminase YPC_2011 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPC_2012 PF00929 Exonuclease YPC_2014 PF00462 Glutaredoxin YPC_2016 PF00877 NlpC/P60 family YPC_2017 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPC_2017 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPC_2018 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_2018 PF03466 LysR substrate binding domain YPC_2019 PF07690 Major Facilitator Superfamily YPC_2021 PF00677 Lumazine binding domain YPC_2022 PF01554 MatE YPC_2025 PF02887 Pyruvate kinase, alpha/beta domain YPC_2025 PF00224 Pyruvate kinase, barrel domain YPC_2026 PF04728 Lipoprotein leucine-zipper YPC_2028 PF01367 5'-3' exonuclease, C-terminal SAM fold YPC_2028 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPC_2029 PF00665 Integrase core domain YPC_2029 PF02796 Helix-turn-helix domain of resolvase YPC_2030 PF01695 IstB-like ATP binding protein YPC_2032 PF03734 L,D-transpeptidase catalytic domain YPC_2032 PF17969 L,D-transpeptidase C-terminal domain YPC_2032 PF01476 LysM domain YPC_2033 PF02657 Fe-S metabolism associated domain YPC_2034 PF00266 Aminotransferase class-V YPC_2035 PF01458 Uncharacterized protein family (UPF0051) YPC_2036 PF00005 ABC transporter YPC_2037 PF01458 Uncharacterized protein family (UPF0051) YPC_2038 PF01521 Iron-sulphur cluster biosynthesis YPC_2039 PF03061 Thioesterase superfamily YPC_2040 PF01565 FAD binding domain YPC_2040 PF13183 4Fe-4S dicluster domain YPC_2040 PF02913 FAD linked oxidases, C-terminal domain YPC_2041 PF01594 AI-2E family transporter YPC_2043 PF02896 PEP-utilising enzyme, TIM barrel domain YPC_2043 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YPC_2043 PF00391 PEP-utilising enzyme, mobile domain YPC_2044 PF03618 Kinase/pyrophosphorylase YPC_2045 PF00793 DAHP synthetase I family YPC_2046 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YPC_2047 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YPC_2048 PF03099 Biotin/lipoate A/B protein ligase family YPC_2048 PF10437 Bacterial lipoate protein ligase C-terminus YPC_2049 PF00877 NlpC/P60 family YPC_2052 PF00892 EamA-like transporter family YPC_2053 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YPC_2054 PF01522 Polysaccharide deacetylase YPC_2055 PF01370 NAD dependent epimerase/dehydratase family YPC_2055 PF02911 Formyl transferase, C-terminal domain YPC_2055 PF00551 Formyl transferase YPC_2056 PF00535 Glycosyl transferase family 2 YPC_2057 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPC_2058 PF00005 ABC transporter YPC_2059 PF00255 Glutathione peroxidase YPC_2060 PF01032 FecCD transport family YPC_2062 PF00216 Bacterial DNA-binding protein YPC_2063 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YPC_2063 PF01588 Putative tRNA binding domain YPC_2063 PF03147 Ferredoxin-fold anticodon binding domain YPC_2063 PF03484 tRNA synthetase B5 domain YPC_2063 PF03483 B3/4 domain YPC_2064 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YPC_2064 PF01409 tRNA synthetases class II core domain (F) YPC_2067 PF00453 Ribosomal protein L20 YPC_2068 PF01632 Ribosomal protein L35 YPC_2069 PF05198 Translation initiation factor IF-3, N-terminal domain YPC_2069 PF00707 Translation initiation factor IF-3, C-terminal domain YPC_2070 PF03129 Anticodon binding domain YPC_2070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPC_2070 PF02824 TGS domain YPC_2070 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPC_2073 PF13619 KTSC domain YPC_2078 PF01914 MarC family integral membrane protein YPC_2079 PF01464 Transglycosylase SLT domain YPC_2080 PF01297 Zinc-uptake complex component A periplasmic YPC_2081 PF00005 ABC transporter YPC_2086 PF14002 YniB-like protein YPC_2087 PF13419 Haloacid dehalogenase-like hydrolase YPC_2089 PF00872 Transposase, Mutator family YPC_2090 PF07883 Cupin domain YPC_2091 PF04962 KduI/IolB family YPC_2093 PF06917 Periplasmic pectate lyase YPC_2096 PF00005 ABC transporter YPC_2096 PF03459 TOBE domain YPC_2096 PF17912 MalK OB fold domain YPC_2097 PF01547 Bacterial extracellular solute-binding protein YPC_2098 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPC_2099 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPC_2102 PF01510 N-acetylmuramoyl-L-alanine amidase YPC_2103 PF01614 Bacterial transcriptional regulator YPC_2103 PF09339 IclR helix-turn-helix domain YPC_2104 PF14583 Oligogalacturonate lyase YPC_2105 PF07690 Major Facilitator Superfamily YPC_2106 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPC_2106 PF02753 Pili assembly chaperone PapD, C-terminal domain YPC_2108 PF13953 PapC C-terminal domain YPC_2108 PF13954 PapC N-terminal domain YPC_2108 PF00577 Outer membrane usher protein YPC_2109 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPC_2109 PF02753 Pili assembly chaperone PapD, C-terminal domain YPC_2110 PF00419 Fimbrial protein YPC_2111 PF01435 Peptidase family M48 YPC_2112 PF11818 C-terminal domain of tail specific protease (DUF3340) YPC_2112 PF17804 Tail specific protease N-terminal domain YPC_2112 PF00595 PDZ domain YPC_2112 PF03572 Peptidase family S41 YPC_2113 PF04352 ProQ/FINO family YPC_2113 PF17516 ProQ C-terminal domain YPC_2115 PF13185 GAF domain YPC_2116 PF04403 Paraquat-inducible protein A YPC_2122 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPC_2122 PF02753 Pili assembly chaperone PapD, C-terminal domain YPC_2126 PF07351 Protein of unknown function (DUF1480) YPC_2129 PF02796 Helix-turn-helix domain of resolvase YPC_2129 PF00665 Integrase core domain YPC_2130 PF01695 IstB-like ATP binding protein YPC_2131 PF00265 Thymidine kinase YPC_2133 PF00816 H-NS histone family YPC_2136 PF00072 Response regulator receiver domain YPC_2137 PF02810 SEC-C motif YPC_2138 PF01842 ACT domain YPC_2138 PF00551 Formyl transferase YPC_2139 PF00872 Transposase, Mutator family YPC_2141 PF03466 LysR substrate binding domain YPC_2141 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_2143 PF03372 Endonuclease/Exonuclease/phosphatase family YPC_2144 PF00293 NUDIX domain YPC_2145 PF07383 Protein of unknown function (DUF1496) YPC_2147 PF01751 Toprim domain YPC_2147 PF01131 DNA topoisomerase YPC_2148 PF02769 AIR synthase related protein, C-terminal domain YPC_2148 PF00586 AIR synthase related protein, N-terminal domain YPC_2150 PF00881 Nitroreductase family YPC_2153 PF17763 Glutaminase/Asparaginase C-terminal domain YPC_2153 PF00710 Asparaginase, N-terminal YPC_2154 PF00857 Isochorismatase family YPC_2155 PF07023 Protein of unknown function (DUF1315) YPC_2156 PF01641 SelR domain YPC_2157 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPC_2157 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPC_2158 PF01263 Aldose 1-epimerase YPC_2159 PF06629 MltA-interacting protein MipA YPC_2160 PF08298 PrkA AAA domain YPC_2160 PF06798 PrkA serine protein kinase C-terminal domain YPC_2161 PF04285 Protein of unknown function (DUF444) YPC_2163 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_2163 PF03466 LysR substrate binding domain YPC_2164 PF02678 Pirin YPC_2164 PF05726 Pirin C-terminal cupin domain YPC_2166 PF07690 Major Facilitator Superfamily YPC_2167 PF01266 FAD dependent oxidoreductase YPC_2168 PF04293 SpoVR like protein YPC_2169 PF07840 FadR C-terminal domain YPC_2169 PF00392 Bacterial regulatory proteins, gntR family YPC_2170 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YPC_2171 PF02600 Disulfide bond formation protein DsbB YPC_2174 PF00266 Aminotransferase class-V YPC_2176 PF00872 Transposase, Mutator family YPC_2178 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPC_2208 PF00872 Transposase, Mutator family YPC_2220 PF06530 Phage antitermination protein Q YPC_2222 PF05772 NinB protein YPC_2225 PF01695 IstB-like ATP binding protein YPC_2226 PF00665 Integrase core domain YPC_2226 PF02796 Helix-turn-helix domain of resolvase YPC_2227 PF00589 Phage integrase family YPC_2227 PF12167 Arm DNA-binding domain YPC_2228 PF03692 Putative zinc- or iron-chelating domain YPC_2229 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPC_2230 PF13406 Transglycosylase SLT domain YPC_2233 PF05166 YcgL domain YPC_2234 PF05209 Septum formation inhibitor MinC, N-terminal domain YPC_2234 PF03775 Septum formation inhibitor MinC, C-terminal domain YPC_2235 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YPC_2236 PF03776 Septum formation topological specificity factor MinE YPC_2237 PF01612 3'-5' exonuclease YPC_2237 PF00570 HRDC domain YPC_2238 PF00501 AMP-binding enzyme YPC_2238 PF13193 AMP-binding enzyme C-terminal domain YPC_2240 PF03843 Outer membrane lipoprotein Slp family YPC_2241 PF00814 Glycoprotease family YPC_2243 PF13307 Helicase C-terminal domain YPC_2243 PF04851 Type III restriction enzyme, res subunit YPC_2244 PF01042 Endoribonuclease L-PSP YPC_2247 PF01081 KDPG and KHG aldolase YPC_2248 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YPC_2248 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YPC_2249 PF01380 SIS domain YPC_2249 PF01418 Helix-turn-helix domain, rpiR family YPC_2250 PF00224 Pyruvate kinase, barrel domain YPC_2250 PF02887 Pyruvate kinase, alpha/beta domain YPC_2252 PF03279 Bacterial lipid A biosynthesis acyltransferase YPC_2253 PF08525 Opacity-associated protein A N-terminal motif YPC_2253 PF01551 Peptidase family M23 YPC_2253 PF01476 LysM domain YPC_2254 PF01297 Zinc-uptake complex component A periplasmic YPC_2255 PF00005 ABC transporter YPC_2256 PF00950 ABC 3 transport family YPC_2257 PF05496 Holliday junction DNA helicase RuvB P-loop domain YPC_2257 PF05491 RuvB C-terminal winged helix domain YPC_2257 PF17864 RuvB AAA lid domain YPC_2258 PF07499 RuvA, C-terminal domain YPC_2258 PF01330 RuvA N terminal domain YPC_2259 PF02075 Crossover junction endodeoxyribonuclease RuvC YPC_2260 PF01709 Transcriptional regulator YPC_2261 PF00293 NUDIX domain YPC_2262 PF01336 OB-fold nucleic acid binding domain YPC_2262 PF02938 GAD domain YPC_2262 PF00152 tRNA synthetases class II (D, K and N) YPC_2263 PF01904 Protein of unknown function DUF72 YPC_2264 PF01124 MAPEG family YPC_2267 PF03932 CutC family YPC_2269 PF06185 YecM protein YPC_2272 PF00750 tRNA synthetases class I (R) YPC_2272 PF03485 Arginyl tRNA synthetase N terminal domain YPC_2272 PF05746 DALR anticodon binding domain YPC_2273 PF05860 haemagglutination activity domain YPC_2273 PF13332 Hemagglutinin repeat YPC_2274 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPC_2274 PF17287 POTRA domain YPC_2274 PF08479 POTRA domain, ShlB-type YPC_2275 PF03023 Lipid II flippase MurJ YPC_2276 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPC_2277 PF04337 Protein of unknown function, DUF480 YPC_2278 PF13302 Acetyltransferase (GNAT) domain YPC_2279 PF07690 Major Facilitator Superfamily YPC_2281 PF07273 Protein of unknown function (DUF1439) YPC_2285 PF02613 Nitrate reductase delta subunit YPC_2286 PF02811 PHP domain YPC_2288 PF01325 Iron dependent repressor, N-terminal DNA binding domain YPC_2288 PF00480 ROK family YPC_2289 PF03009 Glycerophosphoryl diester phosphodiesterase family YPC_2290 PF08402 TOBE domain YPC_2290 PF00005 ABC transporter YPC_2291 PF00528 Binding-protein-dependent transport system inner membrane component YPC_2292 PF00528 Binding-protein-dependent transport system inner membrane component YPC_2294 PF03009 Glycerophosphoryl diester phosphodiesterase family YPC_2296 PF00916 Sulfate permease family YPC_2296 PF01740 STAS domain YPC_2298 PF00793 DAHP synthetase I family YPC_2299 PF13369 Transglutaminase-like superfamily YPC_2300 PF04247 Invasion gene expression up-regulator, SirB YPC_2301 PF13847 Methyltransferase domain YPC_2301 PF17827 PrmC N-terminal domain YPC_2302 PF03462 PCRF domain YPC_2302 PF00472 RF-1 domain YPC_2303 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YPC_2303 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YPC_2303 PF01488 Shikimate / quinate 5-dehydrogenase YPC_2304 PF03550 Outer membrane lipoprotein LolB YPC_2305 PF08544 GHMP kinases C terminal YPC_2305 PF00288 GHMP kinases N terminal domain YPC_2306 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YPC_2306 PF14572 Phosphoribosyl synthetase-associated domain YPC_2308 PF10762 Protein of unknown function (DUF2583) YPC_2310 PF01195 Peptidyl-tRNA hydrolase YPC_2311 PF01926 50S ribosome-binding GTPase YPC_2311 PF06071 Protein of unknown function (DUF933) YPC_2319 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YPC_2320 PF00486 Transcriptional regulatory protein, C terminal YPC_2320 PF00072 Response regulator receiver domain YPC_2321 PF00672 HAMP domain YPC_2321 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_2321 PF00512 His Kinase A (phospho-acceptor) domain YPC_2330 PF08242 Methyltransferase domain YPC_2334 PF00872 Transposase, Mutator family YPC_2344 PF01370 NAD dependent epimerase/dehydratase family YPC_2348 PF05962 HutD YPC_2349 PF01979 Amidohydrolase family YPC_2350 PF00392 Bacterial regulatory proteins, gntR family YPC_2350 PF07702 UTRA domain YPC_2351 PF01979 Amidohydrolase family YPC_2353 PF00267 Gram-negative porin YPC_2354 PF01695 IstB-like ATP binding protein YPC_2355 PF00665 Integrase core domain YPC_2355 PF02796 Helix-turn-helix domain of resolvase YPC_2360 PF08402 TOBE domain YPC_2360 PF00005 ABC transporter YPC_2364 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPC_2364 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPC_2365 PF00480 ROK family YPC_2372 PF00872 Transposase, Mutator family YPC_2373 PF00872 Transposase, Mutator family YPC_2386 PF05638 Type VI secretion system effector, Hcp YPC_2395 PF01066 CDP-alcohol phosphatidyltransferase YPC_2396 PF08459 UvrC Helix-hairpin-helix N-terminal YPC_2396 PF02151 UvrB/uvrC motif YPC_2396 PF01541 GIY-YIG catalytic domain YPC_2397 PF00196 Bacterial regulatory proteins, luxR family YPC_2397 PF00072 Response regulator receiver domain YPC_2398 PF10769 Protein of unknown function (DUF2594) YPC_2400 PF06942 GlpM protein YPC_2402 PF13505 Outer membrane protein beta-barrel domain YPC_2404 PF00324 Amino acid permease YPC_2405 PF01344 Kelch motif YPC_2406 PF03358 NADPH-dependent FMN reductase YPC_2407 PF04261 Dyp-type peroxidase family YPC_2408 PF13473 Cupredoxin-like domain YPC_2408 PF09375 Imelysin YPC_2409 PF03239 Iron permease FTR1 family YPC_2410 PF00474 Sodium:solute symporter family YPC_2412 PF14850 DNA-binding domain of Proline dehydrogenase YPC_2412 PF01619 Proline dehydrogenase YPC_2412 PF00171 Aldehyde dehydrogenase family YPC_2412 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPC_2419 PF00291 Pyridoxal-phosphate dependent enzyme YPC_2420 PF02899 Phage integrase, N-terminal SAM-like domain YPC_2422 PF04545 Sigma-70, region 4 YPC_2422 PF04539 Sigma-70 region 3 YPC_2422 PF04542 Sigma-70 region 2 YPC_2424 PF00700 Bacterial flagellin C-terminal helical region YPC_2424 PF08884 Flagellin D3 domain YPC_2424 PF00669 Bacterial flagellin N-terminal helical region YPC_2425 PF07195 Flagellar hook-associated protein 2 C-terminus YPC_2425 PF02465 Flagellar hook-associated protein 2 N-terminus YPC_2425 PF07196 Flagellin hook IN motif YPC_2426 PF02561 Flagellar protein FliS YPC_2427 PF05400 Flagellar protein FliT YPC_2428 PF12833 Helix-turn-helix domain YPC_2429 PF02743 Cache domain YPC_2429 PF00211 Adenylate and Guanylate cyclase catalytic domain YPC_2429 PF00672 HAMP domain YPC_2431 PF01966 HD domain YPC_2432 PF00730 HhH-GPD superfamily base excision DNA repair protein YPC_2435 PF02049 Flagellar hook-basal body complex protein FliE YPC_2436 PF01514 Secretory protein of YscJ/FliF family YPC_2436 PF08345 Flagellar M-ring protein C-terminal YPC_2437 PF14842 FliG N-terminal domain YPC_2437 PF01706 FliG C-terminal domain YPC_2437 PF14841 FliG middle domain YPC_2438 PF02108 Flagellar assembly protein FliH YPC_2439 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPC_2439 PF18269 T3SS EscN ATPase C-terminal domain YPC_2440 PF02050 Flagellar FliJ protein YPC_2441 PF02120 Flagellar hook-length control protein FliK YPC_2443 PF03748 Flagellar basal body-associated protein FliL YPC_2444 PF02154 Flagellar motor switch protein FliM YPC_2444 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPC_2445 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPC_2445 PF16973 Flagellar motor switch protein FliN N-terminal YPC_2446 PF04347 Flagellar biosynthesis protein, FliO YPC_2447 PF00813 FliP family YPC_2448 PF01313 Bacterial export proteins, family 3 YPC_2449 PF01311 Bacterial export proteins, family 1 YPC_2452 PF00294 pfkB family carbohydrate kinase YPC_2453 PF02653 Branched-chain amino acid transport system / permease component YPC_2454 PF02653 Branched-chain amino acid transport system / permease component YPC_2455 PF00005 ABC transporter YPC_2456 PF13407 Periplasmic binding protein domain YPC_2458 PF02653 Branched-chain amino acid transport system / permease component YPC_2459 PF00596 Class II Aldolase and Adducin N-terminal domain YPC_2460 PF04198 Putative sugar-binding domain YPC_2461 PF00669 Bacterial flagellin N-terminal helical region YPC_2462 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPC_2462 PF00460 Flagella basal body rod protein YPC_2467 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YPC_2467 PF10135 Rod binding protein YPC_2468 PF02119 Flagellar P-ring protein YPC_2469 PF02107 Flagellar L-ring protein YPC_2470 PF00460 Flagella basal body rod protein YPC_2470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPC_2471 PF00460 Flagella basal body rod protein YPC_2471 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPC_2472 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPC_2472 PF00460 Flagella basal body rod protein YPC_2472 PF07559 Flagellar basal body protein FlaE YPC_2473 PF13860 FlgD Ig-like domain YPC_2473 PF13861 FlgD Tudor-like domain YPC_2473 PF03963 Flagellar hook capping protein - N-terminal region YPC_2474 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPC_2474 PF00460 Flagella basal body rod protein YPC_2475 PF00460 Flagella basal body rod protein YPC_2476 PF17656 FlgA N-terminal domain YPC_2476 PF13144 Chaperone for flagella basal body P-ring formation YPC_2477 PF04316 Anti-sigma-28 factor, FlgM YPC_2478 PF05130 FlgN protein YPC_2483 PF06366 Flagellar protein FlhE YPC_2486 PF01312 FlhB HrpN YscU SpaS Family YPC_2487 PF01312 FlhB HrpN YscU SpaS Family YPC_2492 PF10709 Protein of unknown function (DUF2511) YPC_2494 PF04234 CopC domain YPC_2495 PF00210 Ferritin-like domain YPC_2497 PF06440 DNA polymerase III, theta subunit YPC_2498 PF00561 alpha/beta hydrolase fold YPC_2499 PF00561 alpha/beta hydrolase fold YPC_2501 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YPC_2501 PF00326 Prolyl oligopeptidase family YPC_2502 PF13995 YebF-like protein YPC_2504 PF07130 YebG protein YPC_2505 PF03880 DbpA RNA binding domain YPC_2505 PF00271 Helicase conserved C-terminal domain YPC_2505 PF00270 DEAD/DEAH box helicase YPC_2506 PF02222 ATP-grasp domain YPC_2507 PF03701 Uncharacterised protein family (UPF0181) YPC_2508 PF04715 Anthranilate synthase component I, N terminal region YPC_2508 PF00425 chorismate binding enzyme YPC_2509 PF00293 NUDIX domain YPC_2510 PF03315 Serine dehydratase beta chain YPC_2510 PF03313 Serine dehydratase alpha chain YPC_2511 PF01613 Flavin reductase like domain YPC_2512 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YPC_2512 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YPC_2515 PF03328 HpcH/HpaI aldolase/citrate lyase family YPC_2516 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPC_2517 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YPC_2518 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPC_2519 PF00171 Aldehyde dehydrogenase family YPC_2520 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPC_2521 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPC_2522 PF01047 MarR family YPC_2523 PF03741 Integral membrane protein TerC family YPC_2523 PF03471 Transporter associated domain YPC_2524 PF03830 PTS system sorbose subfamily IIB component YPC_2524 PF03610 PTS system fructose IIA component YPC_2525 PF03609 PTS system sorbose-specific iic component YPC_2526 PF03613 PTS system mannose/fructose/sorbose family IID component YPC_2527 PF06173 Protein of unknown function (DUF986) YPC_2528 PF02659 Putative manganese efflux pump YPC_2529 PF00593 TonB dependent receptor YPC_2529 PF07715 TonB-dependent Receptor Plug Domain YPC_2531 PF13426 PAS domain YPC_2531 PF08448 PAS fold YPC_2531 PF08447 PAS fold YPC_2531 PF05231 MASE1 YPC_2531 PF00990 Diguanylate cyclase, GGDEF domain YPC_2531 PF00563 EAL domain YPC_2533 PF13847 Methyltransferase domain YPC_2535 PF00313 'Cold-shock' DNA-binding domain YPC_2536 PF10736 Protein of unknown function (DUF2627) YPC_2537 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YPC_2538 PF00324 Amino acid permease YPC_2541 PF13974 YebO-like protein YPC_2542 PF13996 YobH-like protein YPC_2543 PF10964 Protein of unknown function (DUF2766) YPC_2544 PF12833 Helix-turn-helix domain YPC_2546 PF00664 ABC transporter transmembrane region YPC_2546 PF00005 ABC transporter YPC_2549 PF06167 Glucose-regulated metallo-peptidase M90 YPC_2551 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPC_2551 PF00356 Bacterial regulatory proteins, lacI family YPC_2552 PF01695 IstB-like ATP binding protein YPC_2553 PF00665 Integrase core domain YPC_2553 PF02796 Helix-turn-helix domain of resolvase YPC_2554 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPC_2554 PF00356 Bacterial regulatory proteins, lacI family YPC_2556 PF00872 Transposase, Mutator family YPC_2557 PF01306 LacY proton/sugar symporter YPC_2558 PF16874 Glycosyl hydrolase family 36 C-terminal domain YPC_2558 PF16875 Glycosyl hydrolase family 36 N-terminal domain YPC_2561 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YPC_2561 PF01648 4'-phosphopantetheinyl transferase superfamily YPC_2562 PF03480 Bacterial extracellular solute-binding protein, family 7 YPC_2565 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YPC_2566 PF00072 Response regulator receiver domain YPC_2566 PF00196 Bacterial regulatory proteins, luxR family YPC_2570 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YPC_2576 PF01554 MatE YPC_2577 PF00764 Arginosuccinate synthase YPC_2578 PF01070 FMN-dependent dehydrogenase YPC_2580 PF13378 Enolase C-terminal domain-like YPC_2580 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPC_2581 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPC_2583 PF04134 Protein of unknown function, DUF393 YPC_2584 PF07690 Major Facilitator Superfamily YPC_2586 PF11924 Inverse autotransporter, beta-domain YPC_2586 PF09134 Invasin, domain 3 YPC_2586 PF02369 Bacterial Ig-like domain (group 1) YPC_2587 PF00872 Transposase, Mutator family YPC_2588 PF04363 Protein of unknown function (DUF496) YPC_2591 PF08411 Exonuclease C-terminal YPC_2591 PF00929 Exonuclease YPC_2592 PF13520 Amino acid permease YPC_2594 PF00465 Iron-containing alcohol dehydrogenase YPC_2595 PF00005 ABC transporter YPC_2596 PF00005 ABC transporter YPC_2597 PF02653 Branched-chain amino acid transport system / permease component YPC_2599 PF01370 NAD dependent epimerase/dehydratase family YPC_2601 PF01634 ATP phosphoribosyltransferase YPC_2601 PF08029 HisG, C-terminal domain YPC_2602 PF00815 Histidinol dehydrogenase YPC_2603 PF00155 Aminotransferase class I and II YPC_2604 PF00475 Imidazoleglycerol-phosphate dehydratase YPC_2605 PF00117 Glutamine amidotransferase class-I YPC_2606 PF00977 Histidine biosynthesis protein YPC_2607 PF00977 Histidine biosynthesis protein YPC_2608 PF01502 Phosphoribosyl-AMP cyclohydrolase YPC_2608 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YPC_2609 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPC_2609 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YPC_2610 PF00483 Nucleotidyl transferase YPC_2611 PF00483 Nucleotidyl transferase YPC_2613 PF06276 Ferric iron reductase FhuF-like transporter YPC_2613 PF04183 IucA / IucC family YPC_2614 PF00593 TonB dependent receptor YPC_2614 PF07660 Secretin and TonB N terminus short domain YPC_2614 PF07715 TonB-dependent Receptor Plug Domain YPC_2615 PF01497 Periplasmic binding protein YPC_2618 PF01032 FecCD transport family YPC_2619 PF00005 ABC transporter YPC_2623 PF00282 Pyridoxal-dependent decarboxylase conserved domain YPC_2624 PF11575 FhuF 2Fe-2S C-terminal domain YPC_2624 PF06276 Ferric iron reductase FhuF-like transporter YPC_2625 PF03741 Integral membrane protein TerC family YPC_2625 PF03471 Transporter associated domain YPC_2625 PF00571 CBS domain YPC_2626 PF05170 AsmA family YPC_2627 PF00692 dUTPase YPC_2628 PF00485 Phosphoribulokinase / Uridine kinase family YPC_2629 PF10609 NUBPL iron-transfer P-loop NTPase YPC_2630 PF09334 tRNA synthetases class I (M) YPC_2630 PF01588 Putative tRNA binding domain YPC_2631 PF01797 Transposase IS200 like YPC_2637 PF07690 Major Facilitator Superfamily YPC_2638 PF03788 LrgA family YPC_2639 PF04172 LrgB-like family YPC_2641 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YPC_2641 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPC_2642 PF03949 Malic enzyme, NAD binding domain YPC_2642 PF00390 Malic enzyme, N-terminal domain YPC_2643 PF02698 DUF218 domain YPC_2644 PF02653 Branched-chain amino acid transport system / permease component YPC_2645 PF00005 ABC transporter YPC_2646 PF13407 Periplasmic binding protein domain YPC_2648 PF04235 Protein of unknown function (DUF418) YPC_2649 PF01227 GTP cyclohydrolase I YPC_2650 PF06779 Uncharacterised MFS-type transporter YbfB YPC_2651 PF03466 LysR substrate binding domain YPC_2651 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_2652 PF08240 Alcohol dehydrogenase GroES-like domain YPC_2652 PF00107 Zinc-binding dehydrogenase YPC_2653 PF00756 Putative esterase YPC_2656 PF13533 Biotin-lipoyl like YPC_2657 PF00005 ABC transporter YPC_2659 PF00994 Probable molybdopterin binding domain YPC_2659 PF03453 MoeA N-terminal region (domain I and II) YPC_2659 PF03454 MoeA C-terminal region (domain IV) YPC_2660 PF00899 ThiF family YPC_2661 PF00872 Transposase, Mutator family YPC_2663 PF00005 ABC transporter YPC_2663 PF12848 ABC transporter YPC_2675 PF13592 Winged helix-turn helix YPC_2675 PF13358 DDE superfamily endonuclease YPC_2676 PF13358 DDE superfamily endonuclease YPC_2676 PF13592 Winged helix-turn helix YPC_2677 PF13592 Winged helix-turn helix YPC_2677 PF13358 DDE superfamily endonuclease YPC_2686 PF00004 ATPase family associated with various cellular activities (AAA) YPC_2686 PF07724 AAA domain (Cdc48 subfamily) YPC_2686 PF17871 AAA lid domain YPC_2686 PF10431 C-terminal, D2-small domain, of ClpB protein YPC_2688 PF00691 OmpA family YPC_2688 PF05736 OprF membrane domain YPC_2693 PF00698 Acyl transferase domain YPC_2694 PF00550 Phosphopantetheine attachment site YPC_2700 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YPC_2700 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YPC_2702 PF02801 Beta-ketoacyl synthase, C-terminal domain YPC_2702 PF00109 Beta-ketoacyl synthase, N-terminal domain YPC_2703 PF07977 FabA-like domain YPC_2706 PF08031 Berberine and berberine like YPC_2706 PF01565 FAD binding domain YPC_2710 PF13610 DDE domain YPC_2712 PF04358 DsrC like protein YPC_2713 PF00708 Acylphosphatase YPC_2714 PF17785 PUA-like domain YPC_2714 PF10672 S-adenosylmethionine-dependent methyltransferase YPC_2715 PF08755 Hemimethylated DNA-binding protein YccV like YPC_2717 PF13380 CoA binding domain YPC_2719 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YPC_2720 PF02142 MGS-like domain YPC_2721 PF12462 DNA helicase IV / RNA helicase N terminal YPC_2721 PF13361 UvrD-like helicase C-terminal domain YPC_2721 PF00580 UvrD/REP helicase N-terminal domain YPC_2722 PF03733 Inner membrane component domain YPC_2723 PF12805 FUSC-like inner membrane protein yccS YPC_2724 PF04993 TfoX N-terminal domain YPC_2724 PF04994 TfoX C-terminal domain YPC_2725 PF03846 Cell division inhibitor SulA YPC_2726 PF00691 OmpA family YPC_2726 PF01389 OmpA-like transmembrane domain YPC_2728 PF01797 Transposase IS200 like YPC_2729 PF17414 MatP C-terminal ribbon-helix-helix domain YPC_2729 PF06303 MatP N-terminal domain YPC_2730 PF13654 AAA domain YPC_2730 PF05362 Lon protease (S16) C-terminal proteolytic domain YPC_2731 PF07977 FabA-like domain YPC_2732 PF02801 Beta-ketoacyl synthase, C-terminal domain YPC_2732 PF00109 Beta-ketoacyl synthase, N-terminal domain YPC_2733 PF02796 Helix-turn-helix domain of resolvase YPC_2733 PF00665 Integrase core domain YPC_2734 PF01695 IstB-like ATP binding protein YPC_2735 PF00109 Beta-ketoacyl synthase, N-terminal domain YPC_2735 PF02801 Beta-ketoacyl synthase, C-terminal domain YPC_2736 PF01797 Transposase IS200 like YPC_2738 PF04957 Ribosome modulation factor YPC_2740 PF03886 ABC-type transport auxiliary lipoprotein component YPC_2741 PF02470 MlaD protein YPC_2742 PF04403 Paraquat-inducible protein A YPC_2743 PF12848 ABC transporter YPC_2743 PF00005 ABC transporter YPC_2743 PF16326 ABC transporter C-terminal domain YPC_2744 PF10672 S-adenosylmethionine-dependent methyltransferase YPC_2744 PF01170 Putative RNA methylase family UPF0020 YPC_2744 PF02926 THUMP domain YPC_2745 PF00111 2Fe-2S iron-sulfur cluster binding domain YPC_2745 PF03473 MOSC domain YPC_2745 PF03476 MOSC N-terminal beta barrel domain YPC_2746 PF07126 Cell-division protein ZapC YPC_2747 PF01180 Dihydroorotate dehydrogenase YPC_2749 PF01433 Peptidase family M1 domain YPC_2749 PF11940 Domain of unknown function (DUF3458) Ig-like fold YPC_2749 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YPC_2752 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YPC_2752 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YPC_2753 PF01336 OB-fold nucleic acid binding domain YPC_2753 PF00152 tRNA synthetases class II (D, K and N) YPC_2755 PF00267 Gram-negative porin YPC_2756 PF00155 Aminotransferase class I and II YPC_2758 PF00753 Metallo-beta-lactamase superfamily YPC_2759 PF05951 Bacterial protein of unknown function (DUF882) YPC_2760 PF03734 L,D-transpeptidase catalytic domain YPC_2760 PF01471 Putative peptidoglycan binding domain YPC_2763 PF04310 MukB N-terminal YPC_2763 PF16330 MukB hinge domain YPC_2764 PF04288 MukE-like family YPC_2765 PF03882 MukF winged-helix domain YPC_2765 PF17193 MukF C-terminal domain YPC_2765 PF17192 MukF middle domain YPC_2768 PF01636 Phosphotransferase enzyme family YPC_2769 PF02348 Cytidylyltransferase YPC_2770 PF03966 Trm112p-like protein YPC_2772 PF00313 'Cold-shock' DNA-binding domain YPC_2773 PF07063 Domain of unknown function (DUF1338) YPC_2774 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YPC_2775 PF00664 ABC transporter transmembrane region YPC_2775 PF00005 ABC transporter YPC_2776 PF00753 Metallo-beta-lactamase superfamily YPC_2776 PF03772 Competence protein YPC_2778 PF00216 Bacterial DNA-binding protein YPC_2779 PF00575 S1 RNA binding domain YPC_2780 PF02224 Cytidylate kinase YPC_2781 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPC_2782 PF00266 Aminotransferase class-V YPC_2785 PF00710 Asparaginase, N-terminal YPC_2785 PF17763 Glutaminase/Asparaginase C-terminal domain YPC_2786 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YPC_2786 PF18381 YcaO cyclodehydratase C-terminal domain YPC_2788 PF01226 Formate/nitrite transporter YPC_2789 PF01228 Glycine radical YPC_2789 PF02901 Pyruvate formate lyase-like YPC_2791 PF04055 Radical SAM superfamily YPC_2792 PF07690 Major Facilitator Superfamily YPC_2793 PF00665 Integrase core domain YPC_2793 PF02796 Helix-turn-helix domain of resolvase YPC_2794 PF01695 IstB-like ATP binding protein YPC_2795 PF07690 Major Facilitator Superfamily YPC_2796 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPC_2796 PF02403 Seryl-tRNA synthetase N-terminal domain YPC_2797 PF16193 AAA C-terminal domain YPC_2797 PF00004 ATPase family associated with various cellular activities (AAA) YPC_2797 PF12002 MgsA AAA+ ATPase C terminal YPC_2798 PF03548 Outer membrane lipoprotein carrier protein LolA YPC_2799 PF01580 FtsK/SpoIIIE family YPC_2799 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YPC_2799 PF17854 FtsK alpha domain YPC_2799 PF09397 Ftsk gamma domain YPC_2801 PF01037 Lrp/AsnC ligand binding domain YPC_2802 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPC_2804 PF00664 ABC transporter transmembrane region YPC_2804 PF00005 ABC transporter YPC_2805 PF00664 ABC transporter transmembrane region YPC_2805 PF00005 ABC transporter YPC_2809 PF01176 Translation initiation factor 1A / IF-1 YPC_2814 PF02617 ATP-dependent Clp protease adaptor protein ClpS YPC_2816 PF00313 'Cold-shock' DNA-binding domain YPC_2817 PF12704 MacB-like periplasmic core domain YPC_2817 PF02687 FtsX-like permease family YPC_2817 PF00005 ABC transporter YPC_2818 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPC_2821 PF04393 Protein of unknown function (DUF535) YPC_2822 PF11398 Protein of unknown function (DUF2813) YPC_2823 PF03956 Lysine exporter LysO YPC_2824 PF03063 Prismane/CO dehydrogenase family YPC_2825 PF00175 Oxidoreductase NAD-binding domain YPC_2825 PF00970 Oxidoreductase FAD-binding domain YPC_2825 PF00111 2Fe-2S iron-sulfur cluster binding domain YPC_2826 PF00205 Thiamine pyrophosphate enzyme, central domain YPC_2826 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPC_2826 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPC_2828 PF01212 Beta-eliminating lyase YPC_2829 PF13460 NAD(P)H-binding YPC_2829 PF11066 Protein of unknown function (DUF2867) YPC_2830 PF01370 NAD dependent epimerase/dehydratase family YPC_2831 PF12883 Protein of unknown function (DUF3828) YPC_2833 PF01817 Chorismate mutase type II YPC_2834 PF00005 ABC transporter YPC_2835 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPC_2836 PF00528 Binding-protein-dependent transport system inner membrane component YPC_2837 PF00528 Binding-protein-dependent transport system inner membrane component YPC_2839 PF00892 EamA-like transporter family YPC_2840 PF10100 Staphylopine dehydrogenase YPC_2841 PF03059 Nicotianamine synthase protein YPC_2842 PF00005 ABC transporter YPC_2849 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPC_2850 PF05958 tRNA (Uracil-5-)-methyltransferase YPC_2851 PF10767 Protein of unknown function (DUF2593) YPC_2852 PF00528 Binding-protein-dependent transport system inner membrane component YPC_2853 PF00528 Binding-protein-dependent transport system inner membrane component YPC_2854 PF08402 TOBE domain YPC_2854 PF00005 ABC transporter YPC_2855 PF13416 Bacterial extracellular solute-binding protein YPC_2856 PF10722 Putative bacterial sensory transduction regulator YPC_2857 PF07214 Protein of unknown function (DUF1418) YPC_2858 PF00462 Glutaredoxin YPC_2859 PF02080 TrkA-C domain YPC_2859 PF06826 Predicted Permease Membrane Region YPC_2862 PF01569 PAP2 superfamily YPC_2863 PF01791 DeoC/LacD family aldolase YPC_2864 PF08220 DeoR-like helix-turn-helix domain YPC_2864 PF00455 DeoR C terminal sensor domain YPC_2870 PF07943 Penicillin-binding protein 5, C-terminal domain YPC_2870 PF00768 D-alanyl-D-alanine carboxypeptidase YPC_2871 PF00528 Binding-protein-dependent transport system inner membrane component YPC_2872 PF00005 ABC transporter YPC_2872 PF09383 NIL domain YPC_2873 PF03180 NLPA lipoprotein YPC_2877 PF13417 Glutathione S-transferase, N-terminal domain YPC_2877 PF00043 Glutathione S-transferase, C-terminal domain YPC_2878 PF00593 TonB dependent receptor YPC_2878 PF07715 TonB-dependent Receptor Plug Domain YPC_2879 PF00005 ABC transporter YPC_2880 PF01032 FecCD transport family YPC_2884 PF03466 LysR substrate binding domain YPC_2884 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_2885 PF03601 Conserved hypothetical protein 698 YPC_2886 PF01261 Xylose isomerase-like TIM barrel YPC_2887 PF13953 PapC C-terminal domain YPC_2887 PF13954 PapC N-terminal domain YPC_2887 PF00577 Outer membrane usher protein YPC_2888 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPC_2888 PF02753 Pili assembly chaperone PapD, C-terminal domain YPC_2890 PF17550 Family of unknown function YPC_2891 PF00486 Transcriptional regulatory protein, C terminal YPC_2892 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPC_2892 PF02378 Phosphotransferase system, EIIC YPC_2893 PF00294 pfkB family carbohydrate kinase YPC_2894 PF00381 PTS HPr component phosphorylation site YPC_2894 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPC_2896 PF00293 NUDIX domain YPC_2897 PF02653 Branched-chain amino acid transport system / permease component YPC_2898 PF00005 ABC transporter YPC_2899 PF00005 ABC transporter YPC_2902 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPC_2903 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPC_2903 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPC_2904 PF00171 Aldehyde dehydrogenase family YPC_2906 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPC_2906 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPC_2906 PF01842 ACT domain YPC_2908 PF03692 Putative zinc- or iron-chelating domain YPC_2909 PF03222 Tryptophan/tyrosine permease family YPC_2910 PF01132 Elongation factor P (EF-P) OB domain YPC_2910 PF08207 Elongation factor P (EF-P) KOW-like domain YPC_2910 PF09285 Elongation factor P, C-terminal YPC_2911 PF03786 D-mannonate dehydratase (UxuA) YPC_2913 PF08125 Mannitol dehydrogenase C-terminal domain YPC_2913 PF01232 Mannitol dehydrogenase Rossmann domain YPC_2914 PF07729 FCD domain YPC_2914 PF00392 Bacterial regulatory proteins, gntR family YPC_2917 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPC_2917 PF07683 Cobalamin synthesis protein cobW C-terminal domain YPC_2918 PF01569 PAP2 superfamily YPC_2920 PF00877 NlpC/P60 family YPC_2924 PF12792 CSS motif domain associated with EAL YPC_2924 PF00563 EAL domain YPC_2925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPC_2926 PF00528 Binding-protein-dependent transport system inner membrane component YPC_2927 PF12911 N-terminal TM domain of oligopeptide transport permease C YPC_2927 PF00528 Binding-protein-dependent transport system inner membrane component YPC_2928 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPC_2928 PF00005 ABC transporter YPC_2929 PF00005 ABC transporter YPC_2929 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPC_2930 PF13989 YejG-like protein YPC_2932 PF07690 Major Facilitator Superfamily YPC_2933 PF00849 RNA pseudouridylate synthase YPC_2933 PF01479 S4 domain YPC_2934 PF04851 Type III restriction enzyme, res subunit YPC_2934 PF00271 Helicase conserved C-terminal domain YPC_2935 PF01386 Ribosomal L25p family YPC_2936 PF01797 Transposase IS200 like YPC_2938 PF04245 37-kD nucleoid-associated bacterial protein YPC_2939 PF07208 Protein of unknown function (DUF1414) YPC_2940 PF11893 Domain of unknown function (DUF3413) YPC_2940 PF00884 Sulfatase YPC_2942 PF05638 Type VI secretion system effector, Hcp YPC_2947 PF00232 Glycosyl hydrolase family 1 YPC_2948 PF01418 Helix-turn-helix domain, rpiR family YPC_2948 PF01380 SIS domain YPC_2949 PF07484 Phage Tail Collar Domain YPC_2952 PF04865 Baseplate J-like protein YPC_2962 PF17482 Phage tail sheath C-terminal domain YPC_2962 PF04984 Phage tail sheath protein subtilisin-like domain YPC_2966 PF01261 Xylose isomerase-like TIM barrel YPC_2967 PF00455 DeoR C terminal sensor domain YPC_2967 PF08220 DeoR-like helix-turn-helix domain YPC_2968 PF00596 Class II Aldolase and Adducin N-terminal domain YPC_2969 PF17042 Nucleotide-binding C-terminal domain YPC_2969 PF07005 Sugar-binding N-terminal domain YPC_2970 PF06530 Phage antitermination protein Q YPC_2971 PF00717 Peptidase S24-like YPC_2971 PF01381 Helix-turn-helix YPC_2973 PF06183 DinI-like family YPC_2974 PF01278 Omptin family YPC_2975 PF02743 Cache domain YPC_2975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPC_2975 PF00672 HAMP domain YPC_2976 PF12706 Beta-lactamase superfamily domain YPC_2979 PF00144 Beta-lactamase YPC_2985 PF00267 Gram-negative porin YPC_2987 PF07690 Major Facilitator Superfamily YPC_2988 PF01627 Hpt domain YPC_2988 PF16359 RcsD-ABL domain YPC_2988 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_2989 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_2989 PF16359 RcsD-ABL domain YPC_2989 PF01627 Hpt domain YPC_2990 PF00196 Bacterial regulatory proteins, luxR family YPC_2990 PF00072 Response regulator receiver domain YPC_2991 PF00072 Response regulator receiver domain YPC_2991 PF00512 His Kinase A (phospho-acceptor) domain YPC_2991 PF09456 RcsC Alpha-Beta-Loop (ABL) YPC_2991 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_2993 PF03989 DNA gyrase C-terminal domain, beta-propeller YPC_2993 PF00521 DNA gyrase/topoisomerase IV, subunit A YPC_2995 PF03477 ATP cone domain YPC_2995 PF00317 Ribonucleotide reductase, all-alpha domain YPC_2995 PF02867 Ribonucleotide reductase, barrel domain YPC_2996 PF00268 Ribonucleotide reductase, small chain YPC_2997 PF00111 2Fe-2S iron-sulfur cluster binding domain YPC_2999 PF03974 Ecotin YPC_3000 PF00994 Probable molybdopterin binding domain YPC_3002 PF03222 Tryptophan/tyrosine permease family YPC_3003 PF07437 YfaZ precursor YPC_3004 PF06628 Catalase-related immune-responsive YPC_3004 PF00199 Catalase YPC_3005 PF00270 DEAD/DEAH box helicase YPC_3005 PF06733 DEAD_2 YPC_3005 PF13307 Helicase C-terminal domain YPC_3006 PF00267 Gram-negative porin YPC_3007 PF00892 EamA-like transporter family YPC_3009 PF01276 Orn/Lys/Arg decarboxylase, major domain YPC_3009 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPC_3009 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPC_3010 PF13520 Amino acid permease YPC_3011 PF13520 Amino acid permease YPC_3012 PF00528 Binding-protein-dependent transport system inner membrane component YPC_3013 PF00005 ABC transporter YPC_3014 PF00528 Binding-protein-dependent transport system inner membrane component YPC_3015 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPC_3016 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPC_3017 PF00581 Rhodanese-like domain YPC_3020 PF00005 ABC transporter YPC_3021 PF00005 ABC transporter YPC_3023 PF02653 Branched-chain amino acid transport system / permease component YPC_3024 PF00158 Sigma-54 interaction domain YPC_3024 PF13188 PAS domain YPC_3024 PF02954 Bacterial regulatory protein, Fis family YPC_3025 PF07308 Protein of unknown function (DUF1456) YPC_3026 PF00528 Binding-protein-dependent transport system inner membrane component YPC_3028 PF00528 Binding-protein-dependent transport system inner membrane component YPC_3030 PF00005 ABC transporter YPC_3031 PF04226 Transglycosylase associated protein YPC_3034 PF01844 HNH endonuclease YPC_3035 PF01928 CYTH domain YPC_3037 PF01565 FAD binding domain YPC_3037 PF09330 D-lactate dehydrogenase, membrane binding YPC_3038 PF00768 D-alanyl-D-alanine carboxypeptidase YPC_3041 PF01207 Dihydrouridine synthase (Dus) YPC_3045 PF00271 Helicase conserved C-terminal domain YPC_3045 PF00270 DEAD/DEAH box helicase YPC_3046 PF02371 Transposase IS116/IS110/IS902 family YPC_3046 PF01548 Transposase YPC_3047 PF00872 Transposase, Mutator family YPC_3053 PF05638 Type VI secretion system effector, Hcp YPC_3054 PF01797 Transposase IS200 like YPC_3056 PF00117 Glutamine amidotransferase class-I YPC_3056 PF00958 GMP synthase C terminal domain YPC_3056 PF02540 NAD synthase YPC_3058 PF00478 IMP dehydrogenase / GMP reductase domain YPC_3058 PF00571 CBS domain YPC_3059 PF02601 Exonuclease VII, large subunit YPC_3059 PF13742 OB-fold nucleic acid binding domain YPC_3060 PF07191 zinc-ribbons YPC_3064 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YPC_3064 PF01926 50S ribosome-binding GTPase YPC_3065 PF13360 PQQ-like domain YPC_3066 PF09976 Tetratricopeptide repeat-like domain YPC_3067 PF03129 Anticodon binding domain YPC_3067 PF13393 Histidyl-tRNA synthetase YPC_3069 PF04551 GcpE protein YPC_3070 PF13464 Domain of unknown function (DUF4115) YPC_3072 PF04055 Radical SAM superfamily YPC_3073 PF00334 Nucleoside diphosphate kinase YPC_3077 PF03212 Pertactin YPC_3077 PF03797 Autotransporter beta-domain YPC_3077 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPC_3080 PF03212 Pertactin YPC_3080 PF03797 Autotransporter beta-domain YPC_3080 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPC_3083 PF07179 SseB protein N-terminal domain YPC_3083 PF14581 SseB protein C-terminal domain YPC_3084 PF12404 Peptidase YPC_3084 PF00883 Cytosol aminopeptidase family, catalytic domain YPC_3086 PF04384 Iron-sulphur cluster assembly YPC_3087 PF00111 2Fe-2S iron-sulfur cluster binding domain YPC_3088 PF00012 Hsp70 protein YPC_3089 PF00226 DnaJ domain YPC_3089 PF07743 HSCB C-terminal oligomerisation domain YPC_3090 PF01521 Iron-sulphur cluster biosynthesis YPC_3091 PF01592 NifU-like N terminal domain YPC_3092 PF00266 Aminotransferase class-V YPC_3093 PF02082 Transcriptional regulator YPC_3094 PF00588 SpoU rRNA Methylase family YPC_3095 PF00459 Inositol monophosphatase family YPC_3097 PF01797 Transposase IS200 like YPC_3098 PF03824 High-affinity nickel-transport protein YPC_3099 PF06226 Protein of unknown function (DUF1007) YPC_3100 PF00874 PRD domain YPC_3101 PF12832 MFS_1 like family YPC_3103 PF13505 Outer membrane protein beta-barrel domain YPC_3105 PF00464 Serine hydroxymethyltransferase YPC_3106 PF00042 Globin YPC_3106 PF00175 Oxidoreductase NAD-binding domain YPC_3106 PF00970 Oxidoreductase FAD-binding domain YPC_3107 PF14503 YhfZ C-terminal domain YPC_3107 PF14502 Helix-turn-helix domain YPC_3108 PF00543 Nitrogen regulatory protein P-II YPC_3109 PF02540 NAD synthase YPC_3109 PF00795 Carbon-nitrogen hydrolase YPC_3110 PF00072 Response regulator receiver domain YPC_3110 PF00158 Sigma-54 interaction domain YPC_3111 PF13942 YfhG lipoprotein YPC_3112 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_3112 PF00512 His Kinase A (phospho-acceptor) domain YPC_3119 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YPC_3119 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YPC_3119 PF02769 AIR synthase related protein, C-terminal domain YPC_3120 PF01464 Transglycosylase SLT domain YPC_3120 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPC_3121 PF14437 MafB19-like deaminase YPC_3123 PF01380 SIS domain YPC_3124 PF01380 SIS domain YPC_3124 PF01418 Helix-turn-helix domain, rpiR family YPC_3125 PF12838 4Fe-4S dicluster domain YPC_3126 PF01797 Transposase IS200 like YPC_3128 PF01648 4'-phosphopantetheinyl transferase superfamily YPC_3129 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YPC_3130 PF02565 Recombination protein O C terminal YPC_3130 PF11967 Recombination protein O N terminal YPC_3131 PF01926 50S ribosome-binding GTPase YPC_3131 PF07650 KH domain YPC_3132 PF00035 Double-stranded RNA binding motif YPC_3132 PF14622 Ribonuclease-III-like YPC_3133 PF10502 Signal peptidase, peptidase S26 YPC_3134 PF06421 GTP-binding protein LepA C-terminus YPC_3134 PF00009 Elongation factor Tu GTP binding domain YPC_3134 PF00679 Elongation factor G C-terminus YPC_3134 PF03144 Elongation factor Tu domain 2 YPC_3139 PF08281 Sigma-70, region 4 YPC_3139 PF04542 Sigma-70 region 2 YPC_3140 PF02910 Fumarate reductase flavoprotein C-term YPC_3140 PF00890 FAD binding domain YPC_3141 PF05175 Methyltransferase small domain YPC_3142 PF00270 DEAD/DEAH box helicase YPC_3142 PF00271 Helicase conserved C-terminal domain YPC_3144 PF12796 Ankyrin repeats (3 copies) YPC_3148 PF01228 Glycine radical YPC_3151 PF01470 Pyroglutamyl peptidase YPC_3156 PF02626 Carboxyltransferase domain, subdomain A and B YPC_3157 PF02682 Carboxyltransferase domain, subdomain C and D YPC_3158 PF01784 NIF3 (NGG1p interacting factor 3) YPC_3159 PF02112 cAMP phosphodiesterases class-II YPC_3160 PF00875 DNA photolyase YPC_3160 PF03441 FAD binding domain of DNA photolyase YPC_3161 PF08349 Protein of unknown function (DUF1722) YPC_3163 PF10725 Protein of unknown function (DUF2517) YPC_3164 PF03814 Potassium-transporting ATPase A subunit YPC_3166 PF02669 K+-transporting ATPase, c chain YPC_3167 PF02702 Osmosensitive K+ channel His kinase sensor domain YPC_3167 PF00512 His Kinase A (phospho-acceptor) domain YPC_3167 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_3167 PF13492 GAF domain YPC_3167 PF13493 Domain of unknown function (DUF4118) YPC_3168 PF00486 Transcriptional regulatory protein, C terminal YPC_3168 PF00072 Response regulator receiver domain YPC_3172 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPC_3172 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPC_3172 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPC_3172 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPC_3173 PF03925 SeqA protein C-terminal domain YPC_3173 PF17206 SeqA protein N-terminal domain YPC_3176 PF04794 YdjC-like protein YPC_3177 PF12833 Helix-turn-helix domain YPC_3177 PF07883 Cupin domain YPC_3178 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YPC_3179 PF02378 Phosphotransferase system, EIIC YPC_3180 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPC_3182 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPC_3183 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPC_3184 PF07885 Ion channel YPC_3184 PF02254 TrkA-N domain YPC_3185 PF06411 HdeA/HdeB family YPC_3186 PF03824 High-affinity nickel-transport protein YPC_3187 PF03253 Urea transporter YPC_3190 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPC_3191 PF01730 UreF YPC_3192 PF02814 UreE urease accessory protein, N-terminal domain YPC_3192 PF05194 UreE urease accessory protein, C-terminal domain YPC_3193 PF00449 Urease alpha-subunit, N-terminal domain YPC_3193 PF01979 Amidohydrolase family YPC_3194 PF00699 Urease beta subunit YPC_3195 PF00547 Urease, gamma subunit YPC_3199 PF00528 Binding-protein-dependent transport system inner membrane component YPC_3199 PF12911 N-terminal TM domain of oligopeptide transport permease C YPC_3200 PF00528 Binding-protein-dependent transport system inner membrane component YPC_3201 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPC_3203 PF00313 'Cold-shock' DNA-binding domain YPC_3205 PF06711 Protein of unknown function (DUF1198) YPC_3206 PF09400 Protein of unknown function (DUF2002) YPC_3207 PF06392 Acid shock protein repeat YPC_3209 PF07972 NrdI Flavodoxin like YPC_3210 PF00317 Ribonucleotide reductase, all-alpha domain YPC_3210 PF08343 Ribonucleotide reductase N-terminal YPC_3210 PF02867 Ribonucleotide reductase, barrel domain YPC_3211 PF00268 Ribonucleotide reductase, small chain YPC_3213 PF00571 CBS domain YPC_3213 PF00005 ABC transporter YPC_3214 PF00528 Binding-protein-dependent transport system inner membrane component YPC_3215 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPC_3218 PF00665 Integrase core domain YPC_3218 PF02796 Helix-turn-helix domain of resolvase YPC_3219 PF01695 IstB-like ATP binding protein YPC_3220 PF13356 Arm DNA-binding domain YPC_3220 PF00589 Phage integrase family YPC_3221 PF01527 Transposase YPC_3222 PF00589 Phage integrase family YPC_3222 PF13356 Arm DNA-binding domain YPC_3225 PF12697 Alpha/beta hydrolase family YPC_3227 PF01402 Ribbon-helix-helix protein, copG family YPC_3229 PF00258 Flavodoxin YPC_3230 PF01475 Ferric uptake regulator family YPC_3234 PF03573 outer membrane porin, OprD family YPC_3235 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YPC_3235 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPC_3236 PF01797 Transposase IS200 like YPC_3238 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPC_3238 PF00367 phosphotransferase system, EIIB YPC_3238 PF02378 Phosphotransferase system, EIIC YPC_3239 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YPC_3240 PF01979 Amidohydrolase family YPC_3241 PF01047 MarR family YPC_3241 PF00480 ROK family YPC_3242 PF13344 Haloacid dehalogenase-like hydrolase YPC_3244 PF13537 Glutamine amidotransferase domain YPC_3244 PF00733 Asparagine synthase YPC_3252 PF01494 FAD binding domain YPC_3253 PF04055 Radical SAM superfamily YPC_3253 PF00919 Uncharacterized protein family UPF0004 YPC_3253 PF01938 TRAM domain YPC_3254 PF02562 PhoH-like protein YPC_3255 PF02130 Uncharacterized protein family UPF0054 YPC_3257 PF00571 CBS domain YPC_3257 PF03471 Transporter associated domain YPC_3258 PF00795 Carbon-nitrogen hydrolase YPC_3259 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPC_3260 PF00528 Binding-protein-dependent transport system inner membrane component YPC_3261 PF00528 Binding-protein-dependent transport system inner membrane component YPC_3262 PF00005 ABC transporter YPC_3263 PF07295 Zinc-ribbon containing domain YPC_3265 PF13603 Leucyl-tRNA synthetase, Domain 2 YPC_3265 PF00133 tRNA synthetases class I (I, L, M and V) YPC_3265 PF08264 Anticodon-binding domain of tRNA YPC_3266 PF04390 Lipopolysaccharide-assembly YPC_3267 PF06144 DNA polymerase III, delta subunit YPC_3267 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YPC_3268 PF01467 Cytidylyltransferase-like YPC_3270 PF02590 Predicted SPOUT methyltransferase YPC_3271 PF00905 Penicillin binding protein transpeptidase domain YPC_3271 PF03717 Penicillin-binding Protein dimerisation domain YPC_3272 PF01098 Cell cycle protein YPC_3273 PF03330 Lytic transglycolase YPC_3273 PF05036 Sporulation related domain YPC_3274 PF00768 D-alanyl-D-alanine carboxypeptidase YPC_3274 PF07943 Penicillin-binding protein 5, C-terminal domain YPC_3275 PF04359 Protein of unknown function (DUF493) YPC_3276 PF03099 Biotin/lipoate A/B protein ligase family YPC_3277 PF04055 Radical SAM superfamily YPC_3277 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YPC_3278 PF02416 mttA/Hcf106 family YPC_3280 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPC_3283 PF00313 'Cold-shock' DNA-binding domain YPC_3284 PF00196 Bacterial regulatory proteins, luxR family YPC_3289 PF00664 ABC transporter transmembrane region YPC_3289 PF00005 ABC transporter YPC_3290 PF04962 KduI/IolB family YPC_3291 PF01261 Xylose isomerase-like TIM barrel YPC_3292 PF00294 pfkB family carbohydrate kinase YPC_3293 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPC_3293 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPC_3294 PF02653 Branched-chain amino acid transport system / permease component YPC_3295 PF00005 ABC transporter YPC_3296 PF13407 Periplasmic binding protein domain YPC_3299 PF00205 Thiamine pyrophosphate enzyme, central domain YPC_3299 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPC_3299 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPC_3300 PF00171 Aldehyde dehydrogenase family YPC_3304 PF00207 Alpha-2-macroglobulin family YPC_3304 PF01835 MG2 domain YPC_3304 PF07703 Alpha-2-macroglobulin bait region domain YPC_3304 PF17962 Bacterial macroglobulin domain 6 YPC_3304 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YPC_3304 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YPC_3304 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YPC_3305 PF01797 Transposase IS200 like YPC_3307 PF00912 Transglycosylase YPC_3307 PF00905 Penicillin binding protein transpeptidase domain YPC_3307 PF06832 Penicillin-Binding Protein C-terminus Family YPC_3309 PF13693 Winged helix-turn-helix DNA-binding YPC_3314 PF05638 Type VI secretion system effector, Hcp YPC_3317 PF03212 Pertactin YPC_3317 PF13018 Extended Signal Peptide of Type V secretion system YPC_3317 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPC_3317 PF03797 Autotransporter beta-domain YPC_3320 PF08007 Cupin superfamily protein YPC_3321 PF00872 Transposase, Mutator family YPC_3328 PF00248 Aldo/keto reductase family YPC_3329 PF00248 Aldo/keto reductase family YPC_3330 PF03466 LysR substrate binding domain YPC_3330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_3331 PF00665 Integrase core domain YPC_3331 PF02796 Helix-turn-helix domain of resolvase YPC_3332 PF01695 IstB-like ATP binding protein YPC_3335 PF00782 Dual specificity phosphatase, catalytic domain YPC_3336 PF12146 Serine aminopeptidase, S33 YPC_3336 PF12147 Putative methyltransferase YPC_3337 PF01553 Acyltransferase YPC_3339 PF01066 CDP-alcohol phosphatidyltransferase YPC_3348 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPC_3348 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPC_3350 PF01797 Transposase IS200 like YPC_3352 PF09190 DALR domain YPC_3352 PF01406 tRNA synthetases class I (C) catalytic domain YPC_3353 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPC_3354 PF00149 Calcineurin-like phosphoesterase YPC_3355 PF00731 AIR carboxylase YPC_3356 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YPC_3356 PF02222 ATP-grasp domain YPC_3358 PF00005 ABC transporter YPC_3359 PF13472 GDSL-like Lipase/Acylhydrolase family YPC_3360 PF00106 short chain dehydrogenase YPC_3361 PF00085 Thioredoxin YPC_3363 PF01145 SPFH domain / Band 7 family YPC_3363 PF16200 C-terminal region of band_7 YPC_3364 PF01957 NfeD-like C-terminal, partner-binding YPC_3365 PF13411 MerR HTH family regulatory protein YPC_3366 PF00403 Heavy-metal-associated domain YPC_3369 PF04073 Aminoacyl-tRNA editing domain YPC_3375 PF07690 Major Facilitator Superfamily YPC_3376 PF02254 TrkA-N domain YPC_3376 PF00999 Sodium/hydrogen exchanger family YPC_3377 PF00294 pfkB family carbohydrate kinase YPC_3378 PF02706 Chain length determinant protein YPC_3379 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPC_3379 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPC_3379 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPC_3379 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPC_3380 PF00535 Glycosyl transferase family 2 YPC_3381 PF01050 Mannose-6-phosphate isomerase YPC_3381 PF00483 Nucleotidyl transferase YPC_3382 PF01370 NAD dependent epimerase/dehydratase family YPC_3385 PF00534 Glycosyl transferases group 1 YPC_3385 PF13439 Glycosyltransferase Family 4 YPC_3391 PF01370 NAD dependent epimerase/dehydratase family YPC_3392 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPC_3393 PF16363 GDP-mannose 4,6 dehydratase YPC_3394 PF00483 Nucleotidyl transferase YPC_3395 PF00970 Oxidoreductase FAD-binding domain YPC_3395 PF00175 Oxidoreductase NAD-binding domain YPC_3395 PF00111 2Fe-2S iron-sulfur cluster binding domain YPC_3396 PF00970 Oxidoreductase FAD-binding domain YPC_3396 PF00111 2Fe-2S iron-sulfur cluster binding domain YPC_3396 PF00175 Oxidoreductase NAD-binding domain YPC_3397 PF00762 Ferrochelatase YPC_3398 PF05191 Adenylate kinase, active site lid YPC_3399 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_3399 PF00183 Hsp90 protein YPC_3401 PF13662 Toprim domain YPC_3401 PF02132 RecR protein YPC_3402 PF02575 YbaB/EbfC DNA-binding family YPC_3403 PF12169 DNA polymerase III subunits gamma and tau domain III YPC_3403 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YPC_3403 PF12170 DNA polymerase III tau subunit V interacting with alpha YPC_3407 PF04304 Protein of unknown function (DUF454) YPC_3409 PF10689 Protein of unknown function (DUF2496) YPC_3410 PF00924 Mechanosensitive ion channel YPC_3410 PF12795 Mechanosensitive ion channel porin domain YPC_3410 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPC_3411 PF02635 DsrE/DsrF-like family YPC_3412 PF00440 Bacterial regulatory proteins, tetR family YPC_3412 PF08361 MAATS-type transcriptional repressor, C-terminal region YPC_3413 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPC_3413 PF00529 HlyD membrane-fusion protein of T1SS YPC_3414 PF00873 AcrB/AcrD/AcrF family YPC_3415 PF01197 Ribosomal protein L31 YPC_3416 PF00444 Ribosomal protein L36 YPC_3418 PF10757 Biofilm formation regulator YbaJ YPC_3419 PF05321 Haemolysin expression modulating protein YPC_3421 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPC_3422 PF09619 Type III secretion system lipoprotein chaperone (YscW) YPC_3425 PF00909 Ammonium Transporter Family YPC_3426 PF00543 Nitrogen regulatory protein P-II YPC_3427 PF00664 ABC transporter transmembrane region YPC_3427 PF00005 ABC transporter YPC_3428 PF00005 ABC transporter YPC_3428 PF00664 ABC transporter transmembrane region YPC_3429 PF13404 AsnC-type helix-turn-helix domain YPC_3429 PF01037 Lrp/AsnC ligand binding domain YPC_3430 PF00291 Pyridoxal-phosphate dependent enzyme YPC_3432 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPC_3432 PF12793 Sugar transport-related sRNA regulator N-term YPC_3433 PF06508 Queuosine biosynthesis protein QueC YPC_3437 PF13145 PPIC-type PPIASE domain YPC_3438 PF00216 Bacterial DNA-binding protein YPC_3439 PF02190 ATP-dependent protease La (LON) substrate-binding domain YPC_3439 PF05362 Lon protease (S16) C-terminal proteolytic domain YPC_3439 PF00004 ATPase family associated with various cellular activities (AAA) YPC_3440 PF10431 C-terminal, D2-small domain, of ClpB protein YPC_3440 PF07724 AAA domain (Cdc48 subfamily) YPC_3440 PF06689 ClpX C4-type zinc finger YPC_3441 PF00574 Clp protease YPC_3442 PF05698 Bacterial trigger factor protein (TF) C-terminus YPC_3442 PF05697 Bacterial trigger factor protein (TF) YPC_3442 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPC_3444 PF01722 BolA-like protein YPC_3445 PF03923 Uncharacterized lipoprotein YPC_3445 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPC_3446 PF07690 Major Facilitator Superfamily YPC_3448 PF03502 Nucleoside-specific channel-forming protein, Tsx YPC_3449 PF06481 COX Aromatic Rich Motif YPC_3449 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YPC_3450 PF00115 Cytochrome C and Quinol oxidase polypeptide I YPC_3451 PF00510 Cytochrome c oxidase subunit III YPC_3452 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YPC_3453 PF01040 UbiA prenyltransferase family YPC_3454 PF07690 Major Facilitator Superfamily YPC_3455 PF04461 Protein of unknown function (DUF520) YPC_3456 PF02558 Ketopantoate reductase PanE/ApbA YPC_3456 PF08546 Ketopantoate reductase PanE/ApbA C terminal YPC_3457 PF01965 DJ-1/PfpI family YPC_3458 PF02926 THUMP domain YPC_3458 PF02568 Thiamine biosynthesis protein (ThiI) YPC_3460 PF02609 Exonuclease VII small subunit YPC_3461 PF00348 Polyprenyl synthetase YPC_3462 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YPC_3462 PF02779 Transketolase, pyrimidine binding domain YPC_3462 PF02780 Transketolase, C-terminal domain YPC_3465 PF04608 Phosphatidylglycerophosphatase A YPC_3466 PF00586 AIR synthase related protein, N-terminal domain YPC_3466 PF02769 AIR synthase related protein, C-terminal domain YPC_3467 PF01029 NusB family YPC_3468 PF00885 6,7-dimethyl-8-ribityllumazine synthase YPC_3469 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPC_3469 PF01872 RibD C-terminal domain YPC_3470 PF03477 ATP cone domain YPC_3475 PF02355 Protein export membrane protein YPC_3475 PF07549 SecD/SecF GG Motif YPC_3476 PF13721 SecD export protein N-terminal TM region YPC_3476 PF02355 Protein export membrane protein YPC_3476 PF07549 SecD/SecF GG Motif YPC_3477 PF02699 Preprotein translocase subunit YPC_3478 PF01702 Queuine tRNA-ribosyltransferase YPC_3479 PF02547 Queuosine biosynthesis protein YPC_3480 PF04336 Acyl carrier protein phosphodiesterase YPC_3481 PF00578 AhpC/TSA family YPC_3481 PF10417 C-terminal domain of 1-Cys peroxiredoxin YPC_3486 PF00128 Alpha amylase, catalytic domain YPC_3486 PF02903 Alpha amylase, N-terminal ig-like domain YPC_3487 PF00324 Amino acid permease YPC_3488 PF05525 Branched-chain amino acid transport protein YPC_3489 PF12849 PBP superfamily domain YPC_3490 PF00989 PAS fold YPC_3490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_3490 PF00512 His Kinase A (phospho-acceptor) domain YPC_3490 PF11808 Phosphate regulon sensor protein PhoR YPC_3491 PF00072 Response regulator receiver domain YPC_3491 PF00486 Transcriptional regulatory protein, C terminal YPC_3493 PF00149 Calcineurin-like phosphoesterase YPC_3493 PF12320 Type 5 capsule protein repressor C-terminal domain YPC_3494 PF13476 AAA domain YPC_3495 PF00480 ROK family YPC_3496 PF01695 IstB-like ATP binding protein YPC_3497 PF02796 Helix-turn-helix domain of resolvase YPC_3497 PF00665 Integrase core domain YPC_3498 PF04381 Putative exonuclease, RdgC YPC_3499 PF06865 Pyrimidine/purine nucleoside phosphorylase YPC_3500 PF01202 Shikimate kinase YPC_3503 PF08241 Methyltransferase domain YPC_3506 PF07317 Flagellar regulator YcgR YPC_3506 PF07238 PilZ domain YPC_3507 PF01797 Transposase IS200 like YPC_3511 PF00171 Aldehyde dehydrogenase family YPC_3512 PF00696 Amino acid kinase family YPC_3512 PF01472 PUA domain YPC_3513 PF07417 Sigma factor-binding transcriptional regulator Crl YPC_3515 PF00156 Phosphoribosyl transferase domain YPC_3520 PF01797 Transposase IS200 like YPC_3521 PF03466 LysR substrate binding domain YPC_3521 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_3522 PF01546 Peptidase family M20/M25/M40 YPC_3522 PF07687 Peptidase dimerisation domain YPC_3524 PF11799 impB/mucB/samB family C-terminal domain YPC_3524 PF00817 impB/mucB/samB family YPC_3524 PF11798 IMS family HHH motif YPC_3525 PF03009 Glycerophosphoryl diester phosphodiesterase family YPC_3527 PF02424 ApbE family YPC_3528 PF00111 2Fe-2S iron-sulfur cluster binding domain YPC_3528 PF00970 Oxidoreductase FAD-binding domain YPC_3528 PF00175 Oxidoreductase NAD-binding domain YPC_3529 PF02508 Rnf-Nqr subunit, membrane protein YPC_3530 PF02508 Rnf-Nqr subunit, membrane protein YPC_3531 PF04205 FMN-binding domain YPC_3532 PF03116 NQR2, RnfD, RnfE family YPC_3533 PF11973 NQRA C-terminal domain YPC_3533 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YPC_3535 PF03734 L,D-transpeptidase catalytic domain YPC_3536 PF13230 Glutamine amidotransferases class-II YPC_3537 PF13580 SIS domain YPC_3538 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPC_3538 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPC_3538 PF09317 Domain of unknown function (DUF1974) YPC_3540 PF18254 HMW1 domain 2 YPC_3540 PF18071 HMW1C N-terminal YPC_3542 PF05860 haemagglutination activity domain YPC_3548 PF07687 Peptidase dimerisation domain YPC_3548 PF01546 Peptidase family M20/M25/M40 YPC_3549 PF00266 Aminotransferase class-V YPC_3550 PF00005 ABC transporter YPC_3552 PF00528 Binding-protein-dependent transport system inner membrane component YPC_3553 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPC_3558 PF01425 Amidase YPC_3560 PF07690 Major Facilitator Superfamily YPC_3561 PF03591 AzlC protein YPC_3562 PF05437 Branched-chain amino acid transport protein (AzlD) YPC_3563 PF01047 MarR family YPC_3564 PF00529 HlyD membrane-fusion protein of T1SS YPC_3564 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPC_3565 PF07690 Major Facilitator Superfamily YPC_3566 PF00588 SpoU rRNA Methylase family YPC_3566 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPC_3567 PF00085 Thioredoxin YPC_3570 PF13380 CoA binding domain YPC_3570 PF00583 Acetyltransferase (GNAT) family YPC_3570 PF13607 Succinyl-CoA ligase like flavodoxin domain YPC_3571 PF13091 PLD-like domain YPC_3572 PF10043 Predicted periplasmic lipoprotein (DUF2279) YPC_3579 PF00004 ATPase family associated with various cellular activities (AAA) YPC_3579 PF07724 AAA domain (Cdc48 subfamily) YPC_3579 PF02861 Clp amino terminal domain, pathogenicity island component YPC_3579 PF17871 AAA lid domain YPC_3579 PF10431 C-terminal, D2-small domain, of ClpB protein YPC_3581 PF01479 S4 domain YPC_3581 PF00849 RNA pseudouridylate synthase YPC_3582 PF13525 Outer membrane lipoprotein YPC_3583 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPC_3584 PF01797 Transposase IS200 like YPC_3586 PF01817 Chorismate mutase type II YPC_3586 PF00800 Prephenate dehydratase YPC_3587 PF00665 Integrase core domain YPC_3587 PF02796 Helix-turn-helix domain of resolvase YPC_3588 PF01695 IstB-like ATP binding protein YPC_3589 PF01817 Chorismate mutase type II YPC_3589 PF00800 Prephenate dehydratase YPC_3590 PF01817 Chorismate mutase type II YPC_3590 PF02153 Prephenate dehydrogenase YPC_3591 PF00793 DAHP synthetase I family YPC_3592 PF00072 Response regulator receiver domain YPC_3592 PF04397 LytTr DNA-binding domain YPC_3593 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPC_3594 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPC_3595 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPC_3596 PF04338 Protein of unknown function, DUF481 YPC_3597 PF01797 Transposase IS200 like YPC_3600 PF01245 Ribosomal protein L19 YPC_3601 PF01746 tRNA (Guanine-1)-methyltransferase YPC_3602 PF05239 PRC-barrel domain YPC_3602 PF01782 RimM N-terminal domain YPC_3603 PF00886 Ribosomal protein S16 YPC_3605 PF02978 Signal peptide binding domain YPC_3605 PF00448 SRP54-type protein, GTPase domain YPC_3605 PF02881 SRP54-type protein, helical bundle domain YPC_3606 PF01578 Cytochrome C assembly protein YPC_3607 PF01595 Cyclin M transmembrane N-terminal domain YPC_3607 PF00571 CBS domain YPC_3607 PF03471 Transporter associated domain YPC_3610 PF02664 S-Ribosylhomocysteinase (LuxS) YPC_3612 PF04262 Glutamate-cysteine ligase YPC_3613 PF09335 SNARE associated Golgi protein YPC_3614 PF13419 Haloacid dehalogenase-like hydrolase YPC_3619 PF02599 Global regulator protein family YPC_3620 PF01411 tRNA synthetases class II (A) YPC_3620 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPC_3620 PF02272 DHHA1 domain YPC_3621 PF02631 RecX family YPC_3622 PF00154 recA bacterial DNA recombination protein YPC_3623 PF02464 Competence-damaged protein YPC_3624 PF07690 Major Facilitator Superfamily YPC_3628 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPC_3628 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPC_3631 PF02653 Branched-chain amino acid transport system / permease component YPC_3632 PF00005 ABC transporter YPC_3635 PF00141 Peroxidase YPC_3636 PF07361 Cytochrome b562 YPC_3637 PF01292 Prokaryotic cytochrome b561 YPC_3639 PF02613 Nitrate reductase delta subunit YPC_3640 PF04976 DMSO reductase anchor subunit (DmsC) YPC_3641 PF13247 4Fe-4S dicluster domain YPC_3641 PF12800 4Fe-4S binding domain YPC_3642 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPC_3642 PF00384 Molybdopterin oxidoreductase YPC_3642 PF01568 Molydopterin dinucleotide binding domain YPC_3643 PF00596 Class II Aldolase and Adducin N-terminal domain YPC_3644 PF08220 DeoR-like helix-turn-helix domain YPC_3644 PF00455 DeoR C terminal sensor domain YPC_3647 PF01797 Transposase IS200 like YPC_3648 PF00005 ABC transporter YPC_3649 PF02653 Branched-chain amino acid transport system / permease component YPC_3650 PF02653 Branched-chain amino acid transport system / permease component YPC_3651 PF01261 Xylose isomerase-like TIM barrel YPC_3652 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPC_3652 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPC_3653 PF05683 Fumarase C-terminus YPC_3653 PF05681 Fumarate hydratase (Fumerase) YPC_3655 PF00557 Metallopeptidase family M24 YPC_3658 PF00593 TonB dependent receptor YPC_3658 PF07715 TonB-dependent Receptor Plug Domain YPC_3660 PF03150 Di-haem cytochrome c peroxidase YPC_3660 PF14376 Haem-binding domain YPC_3660 PF00034 Cytochrome c YPC_3661 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPC_3664 PF01022 Bacterial regulatory protein, arsR family YPC_3665 PF02040 Arsenical pump membrane protein YPC_3666 PF13936 Helix-turn-helix domain YPC_3666 PF04198 Putative sugar-binding domain YPC_3667 PF02734 DAK2 domain YPC_3668 PF02733 Dak1 domain YPC_3670 PF00107 Zinc-binding dehydrogenase YPC_3670 PF08240 Alcohol dehydrogenase GroES-like domain YPC_3671 PF02502 Ribose/Galactose Isomerase YPC_3673 PF01624 MutS domain I YPC_3673 PF05188 MutS domain II YPC_3673 PF00488 MutS domain V YPC_3673 PF05192 MutS domain III YPC_3673 PF05190 MutS family domain IV YPC_3674 PF04539 Sigma-70 region 3 YPC_3674 PF04545 Sigma-70, region 4 YPC_3674 PF04542 Sigma-70 region 2 YPC_3674 PF00140 Sigma-70 factor, region 1.2 YPC_3675 PF01551 Peptidase family M23 YPC_3675 PF01476 LysM domain YPC_3677 PF01975 Survival protein SurE YPC_3678 PF01142 tRNA pseudouridine synthase D (TruD) YPC_3679 PF02542 YgbB family YPC_3680 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPC_3681 PF04977 Septum formation initiator YPC_3682 PF12084 Protein of unknown function (DUF3561) YPC_3684 PF00009 Elongation factor Tu GTP binding domain YPC_3685 PF01507 Phosphoadenosine phosphosulfate reductase family YPC_3686 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPC_3686 PF10414 Sirohaem synthase dimerisation region YPC_3686 PF14824 Sirohaem biosynthesis protein central YPC_3693 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPC_3693 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPC_3694 PF00175 Oxidoreductase NAD-binding domain YPC_3694 PF00258 Flavodoxin YPC_3694 PF00667 FAD binding domain YPC_3695 PF01242 6-pyruvoyl tetrahydropterin synthase YPC_3696 PF04055 Radical SAM superfamily YPC_3699 PF00080 Copper/zinc superoxide dismutase (SODC) YPC_3700 PF03952 Enolase, N-terminal domain YPC_3700 PF00113 Enolase, C-terminal TIM barrel domain YPC_3701 PF00117 Glutamine amidotransferase class-I YPC_3701 PF06418 CTP synthase N-terminus YPC_3702 PF03819 MazG nucleotide pyrophosphohydrolase domain YPC_3704 PF13291 ACT domain YPC_3704 PF04607 Region found in RelA / SpoT proteins YPC_3704 PF02824 TGS domain YPC_3705 PF01938 TRAM domain YPC_3705 PF05958 tRNA (Uracil-5-)-methyltransferase YPC_3707 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_3707 PF01627 Hpt domain YPC_3707 PF00512 His Kinase A (phospho-acceptor) domain YPC_3707 PF00072 Response regulator receiver domain YPC_3707 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPC_3707 PF00672 HAMP domain YPC_3708 PF00595 PDZ domain YPC_3709 PF01966 HD domain YPC_3709 PF13286 Phosphohydrolase-associated domain YPC_3710 PF01048 Phosphorylase superfamily YPC_3711 PF01497 Periplasmic binding protein YPC_3712 PF03458 UPF0126 domain YPC_3714 PF01521 Iron-sulphur cluster biosynthesis YPC_3717 PF00202 Aminotransferase class-III YPC_3719 PF01032 FecCD transport family YPC_3720 PF01497 Periplasmic binding protein YPC_3721 PF00005 ABC transporter YPC_3722 PF14814 Bifunctional transglycosylase second domain YPC_3722 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YPC_3722 PF00905 Penicillin binding protein transpeptidase domain YPC_3722 PF00912 Transglycosylase YPC_3723 PF08482 ATP-dependent helicase C-terminal YPC_3723 PF00271 Helicase conserved C-terminal domain YPC_3723 PF00270 DEAD/DEAH box helicase YPC_3723 PF04408 Helicase associated domain (HA2) YPC_3724 PF02834 LigT like Phosphoesterase YPC_3725 PF03749 Sugar fermentation stimulation protein RE domain YPC_3725 PF17746 SfsA N-terminal OB domain YPC_3726 PF01258 Prokaryotic dksA/traR C4-type zinc finger YPC_3727 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPC_3728 PF01743 Poly A polymerase head domain YPC_3728 PF12627 Probable RNA and SrmB- binding site of polymerase A YPC_3728 PF12626 Polymerase A arginine-rich C-terminus YPC_3729 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YPC_3730 PF02548 Ketopantoate hydroxymethyltransferase YPC_3731 PF02569 Pantoate-beta-alanine ligase YPC_3732 PF02261 Aspartate decarboxylase YPC_3735 PF01061 ABC-2 type transporter YPC_3736 PF00005 ABC transporter YPC_3737 PF00484 Carbonic anhydrase YPC_3738 PF00156 Phosphoribosyl transferase domain YPC_3739 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPC_3739 PF07732 Multicopper oxidase YPC_3739 PF07731 Multicopper oxidase YPC_3739 PF00394 Multicopper oxidase YPC_3740 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YPC_3741 PF17284 Spermidine synthase tetramerisation domain YPC_3742 PF02675 S-adenosylmethionine decarboxylase YPC_3744 PF00892 EamA-like transporter family YPC_3746 PF06062 Uncharacterised protein family (UPF0231) YPC_3748 PF00330 Aconitase family (aconitate hydratase) YPC_3748 PF06434 Aconitate hydratase 2 N-terminus YPC_3748 PF11791 Aconitate B N-terminal domain YPC_3750 PF01797 Transposase IS200 like YPC_3752 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPC_3752 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPC_3754 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPC_3754 PF00364 Biotin-requiring enzyme YPC_3754 PF02817 e3 binding domain YPC_3755 PF00456 Transketolase, thiamine diphosphate binding domain YPC_3755 PF17831 Pyruvate dehydrogenase E1 component middle domain YPC_3756 PF07729 FCD domain YPC_3756 PF00392 Bacterial regulatory proteins, gntR family YPC_3757 PF00324 Amino acid permease YPC_3758 PF17113 Regulatory signalling modulator protein AmpE YPC_3759 PF17113 Regulatory signalling modulator protein AmpE YPC_3760 PF01510 N-acetylmuramoyl-L-alanine amidase YPC_3761 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YPC_3761 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YPC_3762 PF07963 Prokaryotic N-terminal methylation motif YPC_3763 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YPC_3763 PF00437 Type II/IV secretion system protein YPC_3764 PF00482 Type II secretion system (T2SS), protein F YPC_3765 PF00478 IMP dehydrogenase / GMP reductase domain YPC_3766 PF01121 Dephospho-CoA kinase YPC_3767 PF07072 Cell division protein YPC_3768 PF03884 DNA gyrase inhibitor YacG YPC_3770 PF00665 Integrase core domain YPC_3770 PF02796 Helix-turn-helix domain of resolvase YPC_3771 PF01695 IstB-like ATP binding protein YPC_3772 PF01119 DNA mismatch repair protein, C-terminal domain YPC_3772 PF08676 MutL C terminal dimerisation domain YPC_3774 PF00589 Phage integrase family YPC_3774 PF13356 Arm DNA-binding domain YPC_3778 PF00883 Cytosol aminopeptidase family, catalytic domain YPC_3778 PF02789 Cytosol aminopeptidase family, N-terminal domain YPC_3779 PF04364 DNA polymerase III chi subunit, HolC YPC_3780 PF08264 Anticodon-binding domain of tRNA YPC_3780 PF10458 Valyl tRNA synthetase tRNA binding arm YPC_3780 PF00133 tRNA synthetases class I (I, L, M and V) YPC_3781 PF00583 Acetyltransferase (GNAT) family YPC_3782 PF06877 Regulator of ribonuclease activity B YPC_3783 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPC_3783 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPC_3784 PF04074 YhcH/YjgK/YiaL YPC_3787 PF00528 Binding-protein-dependent transport system inner membrane component YPC_3788 PF00528 Binding-protein-dependent transport system inner membrane component YPC_3788 PF12911 N-terminal TM domain of oligopeptide transport permease C YPC_3789 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPC_3789 PF00005 ABC transporter YPC_3790 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPC_3790 PF00005 ABC transporter YPC_3791 PF03477 ATP cone domain YPC_3791 PF13597 Anaerobic ribonucleoside-triphosphate reductase YPC_3795 PF00392 Bacterial regulatory proteins, gntR family YPC_3795 PF07702 UTRA domain YPC_3796 PF06754 Phosphonate metabolism protein PhnG YPC_3797 PF05845 Bacterial phosphonate metabolism protein (PhnH) YPC_3798 PF05861 Bacterial phosphonate metabolism protein (PhnI) YPC_3799 PF06007 Phosphonate metabolism protein PhnJ YPC_3800 PF00005 ABC transporter YPC_3801 PF00005 ABC transporter YPC_3802 PF07969 Amidohydrolase family YPC_3804 PF12706 Beta-lactamase superfamily domain YPC_3805 PF13460 NAD(P)H-binding YPC_3808 PF03459 TOBE domain YPC_3808 PF17912 MalK OB fold domain YPC_3808 PF00005 ABC transporter YPC_3809 PF00528 Binding-protein-dependent transport system inner membrane component YPC_3811 PF13416 Bacterial extracellular solute-binding protein YPC_3814 PF01541 GIY-YIG catalytic domain YPC_3815 PF13508 Acetyltransferase (GNAT) domain YPC_3820 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPC_3820 PF02321 Outer membrane efflux protein YPC_3821 PF00873 AcrB/AcrD/AcrF family YPC_3824 PF00296 Luciferase-like monooxygenase YPC_3825 PF00296 Luciferase-like monooxygenase YPC_3827 PF01381 Helix-turn-helix YPC_3830 PF03880 DbpA RNA binding domain YPC_3830 PF00270 DEAD/DEAH box helicase YPC_3830 PF12343 Cold shock protein DEAD box A YPC_3830 PF00271 Helicase conserved C-terminal domain YPC_3831 PF07719 Tetratricopeptide repeat YPC_3831 PF13181 Tetratricopeptide repeat YPC_3832 PF00575 S1 RNA binding domain YPC_3832 PF03725 3' exoribonuclease family, domain 2 YPC_3832 PF01138 3' exoribonuclease family, domain 1 YPC_3832 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YPC_3832 PF00013 KH domain YPC_3833 PF00665 Integrase core domain YPC_3833 PF13276 HTH-like domain YPC_3833 PF13333 Integrase core domain YPC_3835 PF00669 Bacterial flagellin N-terminal helical region YPC_3835 PF00700 Bacterial flagellin C-terminal helical region YPC_3837 PF18500 CadC C-terminal domain 1 YPC_3837 PF00486 Transcriptional regulatory protein, C terminal YPC_3841 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPC_3841 PF00460 Flagella basal body rod protein YPC_3843 PF02119 Flagellar P-ring protein YPC_3844 PF02107 Flagellar L-ring protein YPC_3845 PF00460 Flagella basal body rod protein YPC_3845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPC_3846 PF00460 Flagella basal body rod protein YPC_3846 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPC_3847 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPC_3847 PF00460 Flagella basal body rod protein YPC_3847 PF07559 Flagellar basal body protein FlaE YPC_3848 PF13861 FlgD Tudor-like domain YPC_3848 PF13860 FlgD Ig-like domain YPC_3848 PF03963 Flagellar hook capping protein - N-terminal region YPC_3849 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPC_3849 PF00460 Flagella basal body rod protein YPC_3850 PF00460 Flagella basal body rod protein YPC_3851 PF13144 Chaperone for flagella basal body P-ring formation YPC_3855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPC_3855 PF18269 T3SS EscN ATPase C-terminal domain YPC_3858 PF08345 Flagellar M-ring protein C-terminal YPC_3858 PF01514 Secretory protein of YscJ/FliF family YPC_3859 PF02049 Flagellar hook-basal body complex protein FliE YPC_3860 PF00158 Sigma-54 interaction domain YPC_3860 PF00072 Response regulator receiver domain YPC_3860 PF02954 Bacterial regulatory protein, Fis family YPC_3862 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPC_3863 PF00813 FliP family YPC_3864 PF01313 Bacterial export proteins, family 3 YPC_3865 PF01311 Bacterial export proteins, family 1 YPC_3866 PF01312 FlhB HrpN YscU SpaS Family YPC_3867 PF00771 FHIPEP family YPC_3873 PF01497 Periplasmic binding protein YPC_3874 PF00419 Fimbrial protein YPC_3874 PF09222 Fimbrial adhesin F17-AG, lectin domain YPC_3875 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPC_3875 PF02753 Pili assembly chaperone PapD, C-terminal domain YPC_3876 PF13954 PapC N-terminal domain YPC_3876 PF13953 PapC C-terminal domain YPC_3876 PF00577 Outer membrane usher protein YPC_3881 PF04972 BON domain YPC_3881 PF13629 Pilus formation protein N terminal region YPC_3881 PF00263 Bacterial type II and III secretion system protein YPC_3882 PF00263 Bacterial type II and III secretion system protein YPC_3882 PF04972 BON domain YPC_3882 PF13629 Pilus formation protein N terminal region YPC_3884 PF00437 Type II/IV secretion system protein YPC_3891 PF02472 Biopolymer transport protein ExbD/TolR YPC_3892 PF01618 MotA/TolQ/ExbB proton channel family YPC_3893 PF01053 Cys/Met metabolism PLP-dependent enzyme YPC_3894 PF09335 SNARE associated Golgi protein YPC_3895 PF06719 AraC-type transcriptional regulator N-terminus YPC_3895 PF12833 Helix-turn-helix domain YPC_3896 PF00465 Iron-containing alcohol dehydrogenase YPC_3898 PF00248 Aldo/keto reductase family YPC_3899 PF08497 Radical SAM N-terminal YPC_3899 PF11842 Domain of unknown function (DUF3362) YPC_3899 PF04055 Radical SAM superfamily YPC_3900 PF04055 Radical SAM superfamily YPC_3900 PF11842 Domain of unknown function (DUF3362) YPC_3900 PF08497 Radical SAM N-terminal YPC_3901 PF07732 Multicopper oxidase YPC_3901 PF07731 Multicopper oxidase YPC_3902 PF01553 Acyltransferase YPC_3903 PF00521 DNA gyrase/topoisomerase IV, subunit A YPC_3903 PF03989 DNA gyrase C-terminal domain, beta-propeller YPC_3904 PF02525 Flavodoxin-like fold YPC_3905 PF03466 LysR substrate binding domain YPC_3905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_3906 PF00204 DNA gyrase B YPC_3906 PF00986 DNA gyrase B subunit, carboxyl terminus YPC_3906 PF01751 Toprim domain YPC_3906 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_3907 PF05728 Uncharacterised protein family (UPF0227) YPC_3908 PF00149 Calcineurin-like phosphoesterase YPC_3910 PF06853 Protein of unknown function (DUF1249) YPC_3911 PF00293 NUDIX domain YPC_3912 PF02321 Outer membrane efflux protein YPC_3914 PF06693 Protein of unknown function (DUF1190) YPC_3915 PF03738 Glutathionylspermidine synthase preATP-grasp YPC_3916 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPC_3918 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YPC_3919 PF04380 Membrane fusogenic activity YPC_3921 PF13520 Amino acid permease YPC_3922 PF01467 Cytidylyltransferase-like YPC_3922 PF00294 pfkB family carbohydrate kinase YPC_3923 PF03710 Glutamate-ammonia ligase adenylyltransferase YPC_3923 PF08335 GlnD PII-uridylyltransferase YPC_3925 PF01928 CYTH domain YPC_3926 PF08239 Bacterial SH3 domain YPC_3927 PF12627 Probable RNA and SrmB- binding site of polymerase A YPC_3927 PF01966 HD domain YPC_3927 PF01743 Poly A polymerase head domain YPC_3928 PF02673 Bacitracin resistance protein BacA YPC_3929 PF02152 Dihydroneopterin aldolase YPC_3930 PF02660 Glycerol-3-phosphate acyltransferase YPC_3931 PF00814 Glycoprotease family YPC_3933 PF01165 Ribosomal protein S21 YPC_3934 PF08278 DNA primase DnaG DnaB-binding YPC_3934 PF01807 CHC2 zinc finger YPC_3934 PF08275 DNA primase catalytic core, N-terminal domain YPC_3934 PF10410 DnaB-helicase binding domain of primase YPC_3935 PF04539 Sigma-70 region 3 YPC_3935 PF04546 Sigma-70, non-essential region YPC_3935 PF04542 Sigma-70 region 2 YPC_3935 PF00140 Sigma-70 factor, region 1.2 YPC_3935 PF03979 Sigma-70 factor, region 1.1 YPC_3935 PF04545 Sigma-70, region 4 YPC_3948 PF03466 LysR substrate binding domain YPC_3948 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_3952 PF01042 Endoribonuclease L-PSP YPC_3960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPC_3960 PF00529 HlyD membrane-fusion protein of T1SS YPC_3961 PF04632 Fusaric acid resistance protein family YPC_3963 PF00933 Glycosyl hydrolase family 3 N terminal domain YPC_3963 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPC_3963 PF14310 Fibronectin type III-like domain YPC_3965 PF00528 Binding-protein-dependent transport system inner membrane component YPC_3966 PF00528 Binding-protein-dependent transport system inner membrane component YPC_3967 PF13416 Bacterial extracellular solute-binding protein YPC_3968 PF00356 Bacterial regulatory proteins, lacI family YPC_3969 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YPC_3970 PF17912 MalK OB fold domain YPC_3970 PF00005 ABC transporter YPC_3970 PF03459 TOBE domain YPC_3974 PF13332 Hemagglutinin repeat YPC_3974 PF05860 haemagglutination activity domain YPC_3974 PF13018 Extended Signal Peptide of Type V secretion system YPC_3974 PF04829 Pre-toxin domain with VENN motif YPC_3975 PF13018 Extended Signal Peptide of Type V secretion system YPC_3975 PF13332 Hemagglutinin repeat YPC_3975 PF04829 Pre-toxin domain with VENN motif YPC_3975 PF05860 haemagglutination activity domain YPC_3978 PF05860 haemagglutination activity domain YPC_3978 PF13332 Hemagglutinin repeat YPC_3978 PF13018 Extended Signal Peptide of Type V secretion system YPC_3978 PF04829 Pre-toxin domain with VENN motif YPC_3979 PF13018 Extended Signal Peptide of Type V secretion system YPC_3979 PF13332 Hemagglutinin repeat YPC_3979 PF05860 haemagglutination activity domain YPC_3979 PF04829 Pre-toxin domain with VENN motif YPC_3980 PF04829 Pre-toxin domain with VENN motif YPC_3980 PF05860 haemagglutination activity domain YPC_3980 PF13332 Hemagglutinin repeat YPC_3980 PF13018 Extended Signal Peptide of Type V secretion system YPC_3981 PF04829 Pre-toxin domain with VENN motif YPC_3981 PF05860 haemagglutination activity domain YPC_3981 PF13018 Extended Signal Peptide of Type V secretion system YPC_3981 PF13332 Hemagglutinin repeat YPC_3982 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPC_3982 PF17287 POTRA domain YPC_3982 PF08479 POTRA domain, ShlB-type YPC_3983 PF00092 von Willebrand factor type A domain YPC_3984 PF02342 TerD domain YPC_3986 PF00092 von Willebrand factor type A domain YPC_3989 PF03729 Short repeat of unknown function (DUF308) YPC_3991 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPC_3991 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPC_3992 PF05175 Methyltransferase small domain YPC_3993 PF03797 Autotransporter beta-domain YPC_3994 PF01863 Protein of unknown function DUF45 YPC_3995 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPC_3996 PF00375 Sodium:dicarboxylate symporter family YPC_3998 PF01797 Transposase IS200 like YPC_4002 PF00149 Calcineurin-like phosphoesterase YPC_4003 PF04379 ApaG domain YPC_4004 PF00398 Ribosomal RNA adenine dimethylase YPC_4005 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YPC_4006 PF00639 PPIC-type PPIASE domain YPC_4006 PF09312 SurA N-terminal domain YPC_4007 PF03968 OstA-like protein YPC_4007 PF04453 LPS transport system D YPC_4008 PF05099 Tellurite resistance protein TerB YPC_4008 PF00226 DnaJ domain YPC_4009 PF00849 RNA pseudouridylate synthase YPC_4018 PF07724 AAA domain (Cdc48 subfamily) YPC_4018 PF00004 ATPase family associated with various cellular activities (AAA) YPC_4018 PF10431 C-terminal, D2-small domain, of ClpB protein YPC_4018 PF17871 AAA lid domain YPC_4019 PF04717 Type VI secretion system, phage-baseplate injector YPC_4031 PF00271 Helicase conserved C-terminal domain YPC_4031 PF00176 SNF2 family N-terminal domain YPC_4031 PF12137 RNA polymerase recycling family C-terminal YPC_4031 PF18339 RapA N-terminal Tudor like domain 1 YPC_4031 PF18337 RapA N-terminal Tudor like domain YPC_4032 PF00136 DNA polymerase family B YPC_4032 PF03104 DNA polymerase family B, exonuclease domain YPC_4033 PF09335 SNARE associated Golgi protein YPC_4034 PF00005 ABC transporter YPC_4035 PF00528 Binding-protein-dependent transport system inner membrane component YPC_4038 PF12793 Sugar transport-related sRNA regulator N-term YPC_4038 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPC_4040 PF07690 Major Facilitator Superfamily YPC_4042 PF00694 Aconitase C-terminal domain YPC_4043 PF00330 Aconitase family (aconitate hydratase) YPC_4044 PF00180 Isocitrate/isopropylmalate dehydrogenase YPC_4045 PF08502 LeuA allosteric (dimerisation) domain YPC_4045 PF00682 HMGL-like YPC_4046 PF01797 Transposase IS200 like YPC_4049 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_4049 PF03466 LysR substrate binding domain YPC_4050 PF00501 AMP-binding enzyme YPC_4051 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPC_4051 PF00205 Thiamine pyrophosphate enzyme, central domain YPC_4051 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPC_4052 PF10369 Small subunit of acetolactate synthase YPC_4054 PF01797 Transposase IS200 like YPC_4055 PF00356 Bacterial regulatory proteins, lacI family YPC_4055 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPC_4056 PF06610 L-alanine exporter YPC_4058 PF02381 MraZ protein, putative antitoxin-like YPC_4059 PF01795 MraW methylase family YPC_4060 PF04999 Cell division protein FtsL YPC_4061 PF03717 Penicillin-binding Protein dimerisation domain YPC_4061 PF00905 Penicillin binding protein transpeptidase domain YPC_4062 PF02875 Mur ligase family, glutamate ligase domain YPC_4062 PF08245 Mur ligase middle domain YPC_4062 PF01225 Mur ligase family, catalytic domain YPC_4063 PF08245 Mur ligase middle domain YPC_4063 PF01225 Mur ligase family, catalytic domain YPC_4063 PF02875 Mur ligase family, glutamate ligase domain YPC_4064 PF00953 Glycosyl transferase family 4 YPC_4064 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YPC_4065 PF08245 Mur ligase middle domain YPC_4065 PF02875 Mur ligase family, glutamate ligase domain YPC_4066 PF01098 Cell cycle protein YPC_4067 PF04101 Glycosyltransferase family 28 C-terminal domain YPC_4067 PF03033 Glycosyltransferase family 28 N-terminal domain YPC_4068 PF01225 Mur ligase family, catalytic domain YPC_4068 PF08245 Mur ligase middle domain YPC_4068 PF02875 Mur ligase family, glutamate ligase domain YPC_4069 PF07478 D-ala D-ala ligase C-terminus YPC_4069 PF01820 D-ala D-ala ligase N-terminus YPC_4070 PF08478 POTRA domain, FtsQ-type YPC_4070 PF03799 Cell division protein FtsQ YPC_4071 PF02491 SHS2 domain inserted in FTSA YPC_4072 PF00091 Tubulin/FtsZ family, GTPase domain YPC_4072 PF12327 FtsZ family, C-terminal domain YPC_4073 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YPC_4075 PF06558 Secretion monitor precursor protein (SecM) YPC_4076 PF01043 SecA preprotein cross-linking domain YPC_4076 PF02810 SEC-C motif YPC_4076 PF07517 SecA DEAD-like domain YPC_4076 PF07516 SecA Wing and Scaffold domain YPC_4078 PF00293 NUDIX domain YPC_4080 PF01695 IstB-like ATP binding protein YPC_4081 PF02796 Helix-turn-helix domain of resolvase YPC_4081 PF00665 Integrase core domain YPC_4082 PF13409 Glutathione S-transferase, N-terminal domain YPC_4083 PF07681 DoxX YPC_4085 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YPC_4086 PF05957 Bacterial protein of unknown function (DUF883) YPC_4089 PF13721 SecD export protein N-terminal TM region YPC_4090 PF09335 SNARE associated Golgi protein YPC_4092 PF00392 Bacterial regulatory proteins, gntR family YPC_4092 PF07729 FCD domain YPC_4093 PF07690 Major Facilitator Superfamily YPC_4094 PF02614 Glucuronate isomerase YPC_4095 PF08125 Mannitol dehydrogenase C-terminal domain YPC_4095 PF01232 Mannitol dehydrogenase Rossmann domain YPC_4096 PF08666 SAF domain YPC_4096 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YPC_4097 PF10688 Bacterial inner membrane protein YPC_4098 PF01797 Transposase IS200 like YPC_4100 PF00186 Dihydrofolate reductase YPC_4101 PF12821 Threonine/Serine exporter, ThrE YPC_4102 PF06738 Putative threonine/serine exporter YPC_4103 PF01810 LysE type translocator YPC_4104 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPC_4104 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPC_4104 PF02142 MGS-like domain YPC_4105 PF00117 Glutamine amidotransferase class-I YPC_4105 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YPC_4106 PF05173 Dihydrodipicolinate reductase, C-terminus YPC_4106 PF01113 Dihydrodipicolinate reductase, N-terminus YPC_4107 PF01797 Transposase IS200 like YPC_4109 PF02401 LytB protein YPC_4112 PF06827 Zinc finger found in FPG and IleRS YPC_4112 PF00133 tRNA synthetases class I (I, L, M and V) YPC_4112 PF08264 Anticodon-binding domain of tRNA YPC_4113 PF06574 FAD synthetase YPC_4113 PF01687 Riboflavin kinase YPC_4114 PF01649 Ribosomal protein S20 YPC_4115 PF03466 LysR substrate binding domain YPC_4115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_4116 PF06965 Na+/H+ antiporter 1 YPC_4117 PF01556 DnaJ C terminal domain YPC_4117 PF00226 DnaJ domain YPC_4117 PF00684 DnaJ central domain YPC_4118 PF00012 Hsp70 protein YPC_4119 PF01184 GPR1/FUN34/yaaH family YPC_4121 PF07690 Major Facilitator Superfamily YPC_4122 PF00994 Probable molybdopterin binding domain YPC_4124 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPC_4126 PF03883 Peroxide stress protein YaaA YPC_4127 PF00291 Pyridoxal-phosphate dependent enzyme YPC_4127 PF14821 Threonine synthase N terminus YPC_4128 PF00288 GHMP kinases N terminal domain YPC_4128 PF08544 GHMP kinases C terminal YPC_4132 PF00072 Response regulator receiver domain YPC_4132 PF00486 Transcriptional regulatory protein, C terminal YPC_4133 PF05981 CreA protein YPC_4134 PF12833 Helix-turn-helix domain YPC_4134 PF06445 GyrI-like small molecule binding domain YPC_4135 PF00300 Histidine phosphatase superfamily (branch 1) YPC_4136 PF01931 Protein of unknown function DUF84 YPC_4137 PF01371 Trp repressor protein YPC_4138 PF14718 Soluble lytic murein transglycosylase L domain YPC_4138 PF01464 Transglycosylase SLT domain YPC_4139 PF00690 Cation transporter/ATPase, N-terminus YPC_4139 PF00689 Cation transporting ATPase, C-terminus YPC_4141 PF00990 Diguanylate cyclase, GGDEF domain YPC_4141 PF17152 Periplasmic sensor domain YPC_4142 PF00691 OmpA family YPC_4143 PF00005 ABC transporter YPC_4143 PF12848 ABC transporter YPC_4144 PF12848 ABC transporter YPC_4144 PF00005 ABC transporter YPC_4146 PF13521 AAA domain YPC_4146 PF01381 Helix-turn-helix YPC_4147 PF18073 Rubredoxin metal binding domain YPC_4148 PF18429 Domain of unknown function (DUF5609) YPC_4150 PF10144 Bacterial virulence factor haemolysin YPC_4151 PF01048 Phosphorylase superfamily YPC_4152 PF01676 Metalloenzyme superfamily YPC_4155 PF01791 DeoC/LacD family aldolase YPC_4157 PF07670 Nucleoside recognition YPC_4157 PF07662 Na+ dependent nucleoside transporter C-terminus YPC_4157 PF01773 Na+ dependent nucleoside transporter N-terminus YPC_4161 PF01734 Patatin-like phospholipase YPC_4162 PF01734 Patatin-like phospholipase YPC_4163 PF07043 Protein of unknown function (DUF1328) YPC_4164 PF04972 BON domain YPC_4165 PF16658 Class II release factor RF3, C-terminal domain YPC_4165 PF03144 Elongation factor Tu domain 2 YPC_4165 PF00009 Elongation factor Tu GTP binding domain YPC_4166 PF00583 Acetyltransferase (GNAT) family YPC_4167 PF03603 DNA polymerase III psi subunit YPC_4172 PF07256 Protein of unknown function (DUF1435) YPC_4173 PF00990 Diguanylate cyclase, GGDEF domain YPC_4175 PF01095 Pectinesterase YPC_4179 PF00873 AcrB/AcrD/AcrF family YPC_4180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPC_4184 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPC_4186 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPC_4186 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPC_4187 PF04198 Putative sugar-binding domain YPC_4187 PF00325 Bacterial regulatory proteins, crp family YPC_4188 PF00325 Bacterial regulatory proteins, crp family YPC_4188 PF04198 Putative sugar-binding domain YPC_4190 PF00005 ABC transporter YPC_4191 PF02653 Branched-chain amino acid transport system / permease component YPC_4194 PF13407 Periplasmic binding protein domain YPC_4195 PF01791 DeoC/LacD family aldolase YPC_4196 PF03992 Antibiotic biosynthesis monooxygenase YPC_4198 PF10696 Protein of unknown function (DUF2501) YPC_4199 PF00391 PEP-utilising enzyme, mobile domain YPC_4199 PF00381 PTS HPr component phosphorylation site YPC_4199 PF02896 PEP-utilising enzyme, TIM barrel domain YPC_4199 PF05524 PEP-utilising enzyme, N-terminal YPC_4199 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPC_4201 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPC_4202 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPC_4203 PF12833 Helix-turn-helix domain YPC_4205 PF05987 Bacterial protein of unknown function (DUF898) YPC_4214 PF01555 DNA methylase YPC_4215 PF01527 Transposase YPC_4216 PF13276 HTH-like domain YPC_4216 PF13683 Integrase core domain YPC_4219 PF12102 Domain of unknown function (DUF3578) YPC_4219 PF07728 AAA domain (dynein-related subfamily) YPC_4220 PF00665 Integrase core domain YPC_4220 PF02796 Helix-turn-helix domain of resolvase YPC_4221 PF01695 IstB-like ATP binding protein YPC_4222 PF02580 D-Tyr-tRNA(Tyr) deacylase YPC_4223 PF03631 Virulence factor BrkB YPC_4224 PF13419 Haloacid dehalogenase-like hydrolase YPC_4226 PF00120 Glutamine synthetase, catalytic domain YPC_4226 PF03951 Glutamine synthetase, beta-Grasp domain YPC_4227 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_4227 PF00512 His Kinase A (phospho-acceptor) domain YPC_4227 PF00989 PAS fold YPC_4228 PF02954 Bacterial regulatory protein, Fis family YPC_4228 PF00072 Response regulator receiver domain YPC_4228 PF00158 Sigma-54 interaction domain YPC_4229 PF06969 HemN C-terminal domain YPC_4229 PF04055 Radical SAM superfamily YPC_4230 PF04220 Der GTPase activator (YihI) YPC_4232 PF01926 50S ribosome-binding GTPase YPC_4234 PF01797 Transposase IS200 like YPC_4238 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPC_4238 PF01367 5'-3' exonuclease, C-terminal SAM fold YPC_4238 PF00476 DNA polymerase family A YPC_4238 PF01612 3'-5' exonuclease YPC_4239 PF01323 DSBA-like thioredoxin domain YPC_4240 PF01636 Phosphotransferase enzyme family YPC_4241 PF06288 Protein of unknown function (DUF1040) YPC_4242 PF12804 MobA-like NTP transferase domain YPC_4243 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YPC_4244 PF00872 Transposase, Mutator family YPC_4251 PF02796 Helix-turn-helix domain of resolvase YPC_4251 PF00665 Integrase core domain YPC_4252 PF01695 IstB-like ATP binding protein YPC_4253 PF13409 Glutathione S-transferase, N-terminal domain YPC_4254 PF03466 LysR substrate binding domain YPC_4254 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_4255 PF02678 Pirin YPC_4255 PF17954 Quercetinase C-terminal cupin domain YPC_4258 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPC_4259 PF04348 LppC putative lipoprotein YPC_4260 PF02021 Uncharacterised protein family UPF0102 YPC_4261 PF13580 SIS domain YPC_4262 PF04972 BON domain YPC_4263 PF00912 Transglycosylase YPC_4267 PF00072 Response regulator receiver domain YPC_4267 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_4267 PF00989 PAS fold YPC_4267 PF00512 His Kinase A (phospho-acceptor) domain YPC_4267 PF01627 Hpt domain YPC_4267 PF18415 Histidine kinase receptor ArcB trans-membrane domain YPC_4269 PF16199 Radical_SAM C-terminal domain YPC_4269 PF04055 Radical SAM superfamily YPC_4270 PF01493 GXGXG motif YPC_4270 PF04898 Glutamate synthase central domain YPC_4270 PF01645 Conserved region in glutamate synthase YPC_4270 PF00310 Glutamine amidotransferases class-II YPC_4271 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPC_4271 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPC_4273 PF04386 Stringent starvation protein B YPC_4274 PF00043 Glutathione S-transferase, C-terminal domain YPC_4274 PF02798 Glutathione S-transferase, N-terminal domain YPC_4275 PF00380 Ribosomal protein S9/S16 YPC_4276 PF00572 Ribosomal protein L13 YPC_4277 PF03969 AFG1-like ATPase YPC_4278 PF06295 Protein of unknown function (DUF1043) YPC_4279 PF13180 PDZ domain YPC_4279 PF00595 PDZ domain YPC_4280 PF01797 Transposase IS200 like YPC_4282 PF13180 PDZ domain YPC_4283 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPC_4284 PF01722 BolA-like protein YPC_4285 PF13466 STAS domain YPC_4286 PF05494 MlaC protein YPC_4287 PF02470 MlaD protein YPC_4288 PF02405 Permease MlaE YPC_4289 PF00005 ABC transporter YPC_4290 PF01699 Sodium/calcium exchanger protein YPC_4291 PF01380 SIS domain YPC_4291 PF00571 CBS domain YPC_4293 PF06835 Lipopolysaccharide-assembly, LptC-related YPC_4294 PF03968 OstA-like protein YPC_4295 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPC_4295 PF00005 ABC transporter YPC_4296 PF04963 Sigma-54 factor, core binding domain YPC_4296 PF00309 Sigma-54 factor, Activator interacting domain (AID) YPC_4296 PF04552 Sigma-54, DNA binding domain YPC_4297 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPC_4298 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPC_4299 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPC_4300 PF03668 P-loop ATPase protein family YPC_4301 PF00381 PTS HPr component phosphorylation site YPC_4302 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPC_4302 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPC_4303 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YPC_4303 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YPC_4304 PF01042 Endoribonuclease L-PSP YPC_4306 PF00356 Bacterial regulatory proteins, lacI family YPC_4307 PF02378 Phosphotransferase system, EIIC YPC_4307 PF00367 phosphotransferase system, EIIB YPC_4308 PF00128 Alpha amylase, catalytic domain YPC_4308 PF11941 Domain of unknown function (DUF3459) YPC_4309 PF01272 Transcription elongation factor, GreA/GreB, C-term YPC_4309 PF14760 Rnk N-terminus YPC_4311 PF07361 Cytochrome b562 YPC_4313 PF01523 Putative modulator of DNA gyrase YPC_4314 PF04751 Protein of unknown function (DUF615) YPC_4315 PF01337 Barstar (barnase inhibitor) YPC_4319 PF04632 Fusaric acid resistance protein family YPC_4320 PF13533 Biotin-lipoyl like YPC_4321 PF07869 Protein of unknown function (DUF1656) YPC_4323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_4323 PF03466 LysR substrate binding domain YPC_4324 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPC_4324 PF03466 LysR substrate binding domain YPC_4327 PF18413 Neuraminidase-like domain YPC_4327 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain YPC_4328 PF12256 Insecticide toxin TcdB middle/N-terminal region YPC_4328 PF03534 Salmonella virulence plasmid 65kDa B protein YPC_4328 PF12255 Insecticide toxin TcdB middle/C-terminal region YPC_4332 PF05785 Rho-activating domain of cytotoxic necrotizing factor YPC_4332 PF18807 Tripartite Tc toxins repeat YPC_4333 PF18807 Tripartite Tc toxins repeat YPC_4333 PF14431 YwqJ-like deaminase YPC_4335 PF01523 Putative modulator of DNA gyrase YPC_4336 PF00795 Carbon-nitrogen hydrolase YPC_4337 PF13116 Protein of unknown function YPC_4337 PF13502 AsmA-like C-terminal region YPC_4338 PF10150 Ribonuclease E/G family YPC_4338 PF00575 S1 RNA binding domain YPC_4339 PF02545 Maf-like protein YPC_4340 PF04093 rod shape-determining protein MreD YPC_4341 PF04085 rod shape-determining protein MreC YPC_4343 PF00563 EAL domain YPC_4343 PF17157 Gammaproteobacterial periplasmic sensor domain YPC_4343 PF00990 Diguanylate cyclase, GGDEF domain YPC_4344 PF00107 Zinc-binding dehydrogenase YPC_4344 PF08240 Alcohol dehydrogenase GroES-like domain YPC_4345 PF00174 Oxidoreductase molybdopterin binding domain YPC_4346 PF01794 Ferric reductase like transmembrane component YPC_4347 PF01220 Dehydroquinase class II YPC_4348 PF00364 Biotin-requiring enzyme YPC_4349 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPC_4349 PF02785 Biotin carboxylase C-terminal domain YPC_4349 PF00289 Biotin carboxylase, N-terminal domain YPC_4352 PF06196 Protein of unknown function (DUF997) YPC_4353 PF00474 Sodium:solute symporter family YPC_4356 PF01207 Dihydrouridine synthase (Dus) YPC_4357 PF02954 Bacterial regulatory protein, Fis family YPC_4361 PF07690 Major Facilitator Superfamily YPC_4362 PF02627 Carboxymuconolactone decarboxylase family YPC_4363 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YPC_4363 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPC_4364 PF00753 Metallo-beta-lactamase superfamily YPC_4365 PF05433 Glycine zipper 2TM domain YPC_4367 PF00313 'Cold-shock' DNA-binding domain YPC_4368 PF00313 'Cold-shock' DNA-binding domain YPC_4373 PF02798 Glutathione S-transferase, N-terminal domain YPC_4374 PF00571 CBS domain YPC_4374 PF01380 SIS domain YPC_4375 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPC_4375 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPC_4377 PF02653 Branched-chain amino acid transport system / permease component YPC_4378 PF00005 ABC transporter YPC_4380 PF03279 Bacterial lipid A biosynthesis acyltransferase YPC_4382 PF00999 Sodium/hydrogen exchanger family YPC_4383 PF00860 Permease family YPC_4384 PF04221 RelB antitoxin YPC_4387 PF00005 ABC transporter YPC_4388 PF00528 Binding-protein-dependent transport system inner membrane component YPC_4389 PF00296 Luciferase-like monooxygenase YPC_4390 PF09084 NMT1/THI5 like YPC_4391 PF03358 NADPH-dependent FMN reductase YPC_4395 PF00294 pfkB family carbohydrate kinase YPC_4396 PF05025 RbsD / FucU transport protein family YPC_4398 PF12833 Helix-turn-helix domain YPC_4398 PF02311 AraC-like ligand binding domain YPC_4399 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPC_4399 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPC_4402 PF03527 RHS protein YPC_4402 PF05593 RHS Repeat YPC_4404 PF04717 Type VI secretion system, phage-baseplate injector YPC_4411 PF03527 RHS protein YPC_4415 PF04717 Type VI secretion system, phage-baseplate injector YPC_4422 PF00004 ATPase family associated with various cellular activities (AAA) YPC_4422 PF17871 AAA lid domain YPC_4422 PF10431 C-terminal, D2-small domain, of ClpB protein YPC_4422 PF07724 AAA domain (Cdc48 subfamily) YPC_4431 PF13333 Integrase core domain YPC_4431 PF00665 Integrase core domain YPC_4431 PF13276 HTH-like domain YPC_4435 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YPC_4435 PF01266 FAD dependent oxidoreductase YPC_4436 PF00343 Carbohydrate phosphorylase YPC_4437 PF00534 Glycosyl transferases group 1 YPC_4437 PF08323 Starch synthase catalytic domain YPC_4439 PF00483 Nucleotidyl transferase YPC_4440 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPC_4440 PF00128 Alpha amylase, catalytic domain YPC_4440 PF18390 Glycogen debranching enzyme C-terminal domain YPC_4441 PF00128 Alpha amylase, catalytic domain YPC_4441 PF02806 Alpha amylase, C-terminal all-beta domain YPC_4441 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPC_4442 PF07694 5TMR of 5TMR-LYT YPC_4442 PF06580 Histidine kinase YPC_4443 PF02369 Bacterial Ig-like domain (group 1) YPC_4443 PF11924 Inverse autotransporter, beta-domain YPC_4443 PF09134 Invasin, domain 3 YPC_4444 PF02369 Bacterial Ig-like domain (group 1) YPC_4444 PF11924 Inverse autotransporter, beta-domain YPC_4444 PF09134 Invasin, domain 3 YPC_4450 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPC_4450 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPC_4451 PF01914 MarC family integral membrane protein YPC_4455 PF01202 Shikimate kinase YPC_4457 PF02447 GntP family permease YPC_4459 PF00356 Bacterial regulatory proteins, lacI family YPC_4459 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPC_4460 PF17954 Quercetinase C-terminal cupin domain YPC_4460 PF02678 Pirin YPC_4463 PF00486 Transcriptional regulatory protein, C terminal YPC_4463 PF00072 Response regulator receiver domain YPC_4465 PF01116 Fructose-bisphosphate aldolase class-II YPC_4467 PF13407 Periplasmic binding protein domain YPC_4468 PF02653 Branched-chain amino acid transport system / permease component YPC_4469 PF00005 ABC transporter YPC_4470 PF13188 PAS domain YPC_4470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_4470 PF00072 Response regulator receiver domain YPC_4470 PF08448 PAS fold YPC_4470 PF00512 His Kinase A (phospho-acceptor) domain YPC_4472 PF01384 Phosphate transporter family YPC_4475 PF10625 Universal stress protein B (UspB) YPC_4476 PF00582 Universal stress protein family YPC_4477 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YPC_4477 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPC_4478 PF08548 Peptidase M10 serralysin C terminal YPC_4478 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YPC_4478 PF00413 Matrixin YPC_4479 PF04445 Putative SAM-dependent methyltransferase YPC_4480 PF01432 Peptidase family M3 YPC_4482 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YPC_4483 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPC_4483 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPC_4484 PF13556 PucR C-terminal helix-turn-helix domain YPC_4484 PF05651 Putative sugar diacid recognition YPC_4484 PF17853 GGDEF-like domain YPC_4487 PF02447 GntP family permease YPC_4488 PF02595 Glycerate kinase family YPC_4493 PF03631 Virulence factor BrkB YPC_4494 PF02611 CDP-diacylglycerol pyrophosphatase YPC_4497 PF00563 EAL domain YPC_4498 PF01361 Tautomerase enzyme YPC_4499 PF00294 pfkB family carbohydrate kinase YPC_4500 PF05193 Peptidase M16 inactive domain YPC_4500 PF00675 Insulinase (Peptidase family M16) YPC_4501 PF00375 Sodium:dicarboxylate symporter family YPC_4503 PF06917 Periplasmic pectate lyase YPC_4504 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPC_4505 PF00563 EAL domain YPC_4505 PF17154 Gammaproteobacterial periplasmic sensor domain YPC_4505 PF00990 Diguanylate cyclase, GGDEF domain YPC_4505 PF00672 HAMP domain YPC_4507 PF01270 Glycosyl hydrolases family 8 YPC_4508 PF00005 ABC transporter YPC_4508 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPC_4509 PF00005 ABC transporter YPC_4509 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPC_4510 PF00528 Binding-protein-dependent transport system inner membrane component YPC_4510 PF12911 N-terminal TM domain of oligopeptide transport permease C YPC_4511 PF00528 Binding-protein-dependent transport system inner membrane component YPC_4512 PF00528 Binding-protein-dependent transport system inner membrane component YPC_4513 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPC_4515 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPC_4515 PF17287 POTRA domain YPC_4515 PF08479 POTRA domain, ShlB-type YPC_4516 PF05594 Haemagluttinin repeat YPC_4516 PF13332 Hemagglutinin repeat YPC_4516 PF05860 haemagglutination activity domain YPC_4516 PF04829 Pre-toxin domain with VENN motif YPC_4517 PF01797 Transposase IS200 like YPC_4519 PF07690 Major Facilitator Superfamily YPC_4522 PF00196 Bacterial regulatory proteins, luxR family YPC_4522 PF00072 Response regulator receiver domain YPC_4523 PF00884 Sulfatase YPC_4523 PF08019 Phosphoethanolamine transferase EptA/EptB YPC_4524 PF12146 Serine aminopeptidase, S33 YPC_4525 PF00324 Amino acid permease YPC_4526 PF00221 Aromatic amino acid lyase YPC_4527 PF17391 Urocanase N-terminal domain YPC_4527 PF17392 Urocanase C-terminal domain YPC_4527 PF01175 Urocanase Rossmann-like domain YPC_4528 PF00291 Pyridoxal-phosphate dependent enzyme YPC_4529 PF00156 Phosphoribosyl transferase domain YPC_4532 PF01497 Periplasmic binding protein YPC_4535 PF00005 ABC transporter YPC_4540 PF13737 Transposase DDE domain YPC_4541 PF13737 Transposase DDE domain YPC_4543 PF04606 Ogr/Delta-like zinc finger YPC_4545 PF00589 Phage integrase family YPC_4545 PF14659 Phage integrase, N-terminal SAM-like domain YPC_4545 PF13356 Arm DNA-binding domain YPC_4547 PF12833 Helix-turn-helix domain YPC_4548 PF02653 Branched-chain amino acid transport system / permease component YPC_4549 PF00005 ABC transporter YPC_4550 PF13407 Periplasmic binding protein domain YPC_4552 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPC_4552 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPC_4554 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPC_4554 PF02753 Pili assembly chaperone PapD, C-terminal domain YPC_4555 PF13953 PapC C-terminal domain YPC_4555 PF00577 Outer membrane usher protein YPC_4555 PF13954 PapC N-terminal domain YPC_4557 PF13954 PapC N-terminal domain YPC_4557 PF13953 PapC C-terminal domain YPC_4557 PF00577 Outer membrane usher protein YPC_4558 PF00419 Fimbrial protein YPC_4560 PF01757 Acyltransferase family YPC_4563 PF13276 HTH-like domain YPC_4563 PF13333 Integrase core domain YPC_4563 PF00665 Integrase core domain YPC_4564 PF07690 Major Facilitator Superfamily YPC_4568 PF01526 Tn3 transposase DDE domain YPC_4568 PF13700 Domain of unknown function (DUF4158) YPC_4571 PF12390 Selenocysteine synthase N terminal YPC_4571 PF03841 L-seryl-tRNA selenium transferase YPC_4572 PF04216 Protein involved in formate dehydrogenase formation YPC_4573 PF01292 Prokaryotic cytochrome b561 YPC_4574 PF09163 Formate dehydrogenase N, transmembrane YPC_4574 PF13247 4Fe-4S dicluster domain YPC_4577 PF02634 FdhD/NarQ family YPC_4579 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPC_4579 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPC_4580 PF02203 Tar ligand binding domain homologue YPC_4580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPC_4580 PF00672 HAMP domain YPC_4584 PF10928 Protein of unknown function (DUF2810) YPC_4586 PF05068 Mannitol repressor YPC_4587 PF01232 Mannitol dehydrogenase Rossmann domain YPC_4587 PF08125 Mannitol dehydrogenase C-terminal domain YPC_4588 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPC_4588 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPC_4588 PF02378 Phosphotransferase system, EIIC YPC_4590 PF11254 Protein of unknown function (DUF3053) YPC_4592 PF02092 Glycyl-tRNA synthetase beta subunit YPC_4592 PF05746 DALR anticodon binding domain YPC_4593 PF02091 Glycyl-tRNA synthetase alpha subunit YPC_4594 PF03352 Methyladenine glycosylase YPC_4597 PF13488 Glycine zipper YPC_4597 PF00691 OmpA family YPC_4599 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPC_4599 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPC_4600 PF00128 Alpha amylase, catalytic domain YPC_4602 PF00155 Aminotransferase class I and II YPC_4603 PF06826 Predicted Permease Membrane Region YPC_4603 PF02080 TrkA-C domain YPC_4605 PF00011 Hsp20/alpha crystallin family YPC_4606 PF00011 Hsp20/alpha crystallin family YPC_4607 PF07119 Protein of unknown function (DUF1375) YPC_4608 PF12566 Protein of unknown function (DUF3748) YPC_4608 PF07676 WD40-like Beta Propeller Repeat YPC_4609 PF12566 Protein of unknown function (DUF3748) YPC_4609 PF07676 WD40-like Beta Propeller Repeat YPC_4610 PF13291 ACT domain YPC_4610 PF00291 Pyridoxal-phosphate dependent enzyme YPC_4611 PF02423 Ornithine cyclodeaminase/mu-crystallin family YPC_4613 PF13276 HTH-like domain YPC_4613 PF13333 Integrase core domain YPC_4613 PF00665 Integrase core domain YPC_4615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPC_4615 PF18053 DNA gyrase B subunit insert domain YPC_4615 PF01751 Toprim domain YPC_4615 PF00986 DNA gyrase B subunit, carboxyl terminus YPC_4615 PF00204 DNA gyrase B YPC_4616 PF02463 RecF/RecN/SMC N terminal domain YPC_4617 PF00712 DNA polymerase III beta subunit, N-terminal domain YPC_4617 PF02768 DNA polymerase III beta subunit, C-terminal domain YPC_4617 PF02767 DNA polymerase III beta subunit, central domain YPC_4618 PF11638 DnaA N-terminal domain YPC_4618 PF08299 Bacterial dnaA protein helix-turn-helix YPC_4618 PF00308 Bacterial dnaA protein YPC_4620 PF00468 Ribosomal protein L34 YPC_4621 PF00825 Ribonuclease P YPC_4622 PF01809 Putative membrane protein insertion efficiency factor YPC_4623 PF14849 YidC periplasmic domain YPC_4623 PF02096 60Kd inner membrane protein YPC_4624 PF01926 50S ribosome-binding GTPase YPC_4624 PF12631 MnmE helical domain YPC_4624 PF10396 GTP-binding protein TrmE N-terminus YPC_4625 PF07055 Enoyl reductase FAD binding domain YPC_4625 PF12241 Trans-2-enoyl-CoA reductase catalytic region YPC_4625 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YPC_4629 PF00860 Permease family YPC_4631 PF13419 Haloacid dehalogenase-like hydrolase YPC_4632 PF00528 Binding-protein-dependent transport system inner membrane component YPC_4633 PF00528 Binding-protein-dependent transport system inner membrane component YPC_4634 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPC_4636 PF01895 PhoU domain YPC_4637 PF00005 ABC transporter YPC_4638 PF00528 Binding-protein-dependent transport system inner membrane component YPC_4639 PF00528 Binding-protein-dependent transport system inner membrane component YPC_4640 PF12849 PBP superfamily domain YPC_4642 PF01380 SIS domain YPC_4643 PF12804 MobA-like NTP transferase domain YPC_4643 PF00132 Bacterial transferase hexapeptide (six repeats) YPC_4645 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YPC_4645 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YPC_4646 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPC_4646 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPC_4648 PF00231 ATP synthase YPC_4649 PF00306 ATP synthase alpha/beta chain, C terminal domain YPC_4649 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPC_4649 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPC_4650 PF00213 ATP synthase delta (OSCP) subunit YPC_4651 PF00430 ATP synthase B/B' CF(0) YPC_4652 PF00137 ATP synthase subunit C YPC_4653 PF00119 ATP synthase A chain YPC_4654 PF03899 ATP synthase I chain YPC_4655 PF02527 rRNA small subunit methyltransferase G YPC_4657 PF01134 Glucose inhibited division protein A YPC_4657 PF13932 GidA associated domain YPC_4659 PF00665 Integrase core domain YPC_4663 PF03545 Yersinia virulence determinant (YopE) YPC_4663 PF09020 YopE, N terminal YPC_4673 PF13276 HTH-like domain YPC_4673 PF00665 Integrase core domain YPC_4673 PF13333 Integrase core domain YPC_4675 PF05818 Enterobacterial TraT complement resistance protein YPC_4688 PF12468 Type III secretion system leucine rich repeat protein YPC_4694 PF05844 YopD protein YPC_4697 PF04792 V antigen (LcrV) protein YPC_4698 PF07216 LcrG protein YPC_4715 PF02311 AraC-like ligand binding domain YPC_4715 PF12833 Helix-turn-helix domain YPC_4716 PF17551 Family of unknown function (DUF5463) YPC_4717 PF05932 Tir chaperone protein (CesT) family YPC_4722 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF YPC_4725 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI YPC_4726 PF01514 Secretory protein of YscJ/FliF family YPC_4729 PF09013 YopH, N-terminal YPC_4730 PF01527 Transposase YPC_4734 PF00102 Protein-tyrosine phosphatase YPC_4734 PF09013 YopH, N-terminal YPC_4735 PF03050 Transposase IS66 family YPC_4735 PF13817 IS66 C-terminal element YPC_4735 PF13007 Transposase C of IS166 homeodomain YPC_4735 PF13005 zinc-finger binding domain of transposase IS66 YPC_4736 PF13683 Integrase core domain YPC_4736 PF13276 HTH-like domain YPC_4744 PF02387 IncFII RepA protein family YPC_4746 PF10723 Replication regulatory protein RepB YPC_4751 PF18272 single-stranded DNA binding TraI N-terminal subdomain YPC_4751 PF08751 TrwC relaxase YPC_4751 PF18340 DNA relaxase TraI 2B/2B-like domain YPC_4751 PF07057 DNA helicase TraI YPC_4753 PF05658 Head domain of trimeric autotransporter adhesin YPC_4753 PF05662 Coiled stalk of trimeric autotransporter adhesin YPC_4753 PF03895 YadA-like membrane anchor domain YPC_4755 PF13700 Domain of unknown function (DUF4158) YPC_4755 PF01526 Tn3 transposase DDE domain YPC_4756 PF00239 Resolvase, N terminal domain YPC_4756 PF02796 Helix-turn-helix domain of resolvase YPC_4759 PF01527 Transposase YPC_4760 PF13683 Integrase core domain YPC_4760 PF13276 HTH-like domain YPC_4762 PF01695 IstB-like ATP binding protein YPC_4764 PF02796 Helix-turn-helix domain of resolvase YPC_4764 PF00665 Integrase core domain YPC_4765 PF01695 IstB-like ATP binding protein YPC_4766 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPC_4767 PF03335 Phage tail fibre repeat YPC_4767 PF08400 Prophage tail fibre N-terminal YPC_4767 PF08400 Prophage tail fibre N-terminal YPC_4767 PF07484 Phage Tail Collar Domain YPC_4767 PF07484 Phage Tail Collar Domain YPC_4767 PF03335 Phage tail fibre repeat YPC_4793 PF03412 Peptidase C39 family YPC_4793 PF00005 ABC transporter YPC_4793 PF00664 ABC transporter transmembrane region YPC_4794 PF17762 HTH domain found in ParB protein YPC_4794 PF02195 ParB-like nuclease domain YPC_4795 PF02195 ParB-like nuclease domain YPC_4795 PF17762 HTH domain found in ParB protein YPC_4796 PF00271 Helicase conserved C-terminal domain YPC_4796 PF17191 RecG wedge domain YPC_4796 PF00270 DEAD/DEAH box helicase YPC_4815 PF01051 Initiator Replication protein YPC_4824 PF00154 recA bacterial DNA recombination protein YPC_4826 PF01367 5'-3' exonuclease, C-terminal SAM fold YPC_4826 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPC_4831 PF02811 PHP domain YPC_4831 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPC_4831 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPC_4831 PF14579 Helix-hairpin-helix motif YPC_4833 PF06213 Cobalamin biosynthesis protein CobT YPC_4833 PF11775 Cobalamin biosynthesis protein CobT VWA domain YPC_4838 PF09255 Caf1 Capsule antigen YPC_4839 PF00577 Outer membrane usher protein YPC_4839 PF13954 PapC N-terminal domain YPC_4839 PF13953 PapC C-terminal domain YPC_4840 PF02753 Pili assembly chaperone PapD, C-terminal domain YPC_4840 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPC_4841 PF12833 Helix-turn-helix domain YPC_4841 PF06445 GyrI-like small molecule binding domain YPC_4847 PF01695 IstB-like ATP binding protein YPC_4848 PF00665 Integrase core domain YPC_4848 PF02796 Helix-turn-helix domain of resolvase YPC_4849 PF02195 ParB-like nuclease domain YPC_4850 PF06006 Bacterial protein of unknown function (DUF905) YPC_4853 PF07128 Protein of unknown function (DUF1380) YPC_4855 PF01555 DNA methylase YPC_4858 PF11799 impB/mucB/samB family C-terminal domain YPC_4858 PF00817 impB/mucB/samB family YPC_4858 PF13438 Domain of unknown function (DUF4113) YPC_4860 PF08775 ParB family YPC_4860 PF02195 ParB-like nuclease domain YPC_4861 PF18607 ParA helix turn helix domain YPC_4861 PF13614 AAA domain YPC_4864 PF02796 Helix-turn-helix domain of resolvase YPC_4864 PF00239 Resolvase, N terminal domain YPC_4865 PF04754 Putative transposase, YhgA-like YPC_4867 PF13091 PLD-like domain YPC_4870 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) YPC_4873 PF04754 Putative transposase, YhgA-like YPC_4874 PF02371 Transposase IS116/IS110/IS902 family YPC_4874 PF01548 Transposase YPC_4875 PF00872 Transposase, Mutator family YPC_4879 PF02796 Helix-turn-helix domain of resolvase YPC_4879 PF00665 Integrase core domain YPC_4881 PF01695 IstB-like ATP binding protein YPC_4882 PF01815 Rop protein YPC_4887 PF01278 Omptin family YPC_4889 PF05973 Phage derived protein Gp49-like (DUF891)