locus-tag class description YP_0001 IPR008254 Flavodoxin/nitric oxide synthase YP_0001 IPR029039 Flavoprotein-like superfamily YP_0002 IPR000485 AsnC-type HTH domain YP_0002 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0002 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YP_0002 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YP_0002 IPR011008 Dimeric alpha-beta barrel YP_0002 IPR019888 Transcription regulator AsnC-type YP_0002 IPR011991 ArsR-like helix-turn-helix domain YP_0002 IPR036390 Winged helix DNA-binding domain superfamily YP_0003 IPR004618 Aspartate--ammonia ligase YP_0003 IPR006195 Aminoacyl-tRNA synthetase, class II YP_0004 IPR002035 von Willebrand factor, type A YP_0004 IPR036465 von Willebrand factor A-like domain superfamily YP_0004 IPR008912 Uncharacterised protein family CoxE-like YP_0004 IPR023481 Uncharacterised protein family ViaA YP_0005 IPR041538 ATPase RavA-like, AAA lid domain YP_0005 IPR011704 ATPase, dynein-related, AAA domain YP_0005 IPR023671 ATPase RavA YP_0005 IPR022547 ATPase, RavA, C-terminal YP_0005 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0005 IPR003593 AAA+ ATPase domain YP_0006 IPR023051 Potassium uptake protein, low affinity, Kup YP_0006 IPR003855 Potassium transporter YP_0007 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU YP_0007 IPR023750 RbsD-like superfamily YP_0007 IPR023064 D-ribose pyranase YP_0008 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YP_0008 IPR011877 Ribokinase YP_0008 IPR011611 Carbohydrate kinase PfkB YP_0008 IPR002139 Ribokinase/fructokinase YP_0008 IPR029056 Ribokinase-like YP_0010 IPR011701 Major facilitator superfamily YP_0010 IPR004638 Drug resistance transporter EmrB-like YP_0010 IPR020846 Major facilitator superfamily domain YP_0010 IPR036259 MFS transporter superfamily YP_0011 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_0011 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0011 IPR000524 Transcription regulator HTH, GntR YP_0011 IPR011711 GntR, C-terminal YP_0011 IPR036390 Winged helix DNA-binding domain superfamily YP_0012 IPR001207 Transposase, mutator type YP_0013 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0013 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain YP_0014 IPR013482 Molybdenum cofactor guanylyltransferase YP_0014 IPR025877 MobA-like NTP transferase YP_0014 IPR029044 Nucleotide-diphospho-sugar transferases YP_0015 IPR009383 Protein of unknown function DUF1040 YP_0015 IPR038134 YihD-like superfamily YP_0016 IPR011009 Protein kinase-like domain superfamily YP_0016 IPR002575 Aminoglycoside phosphotransferase YP_0016 IPR032882 SrkA/RdoA protein kinase YP_0017 IPR001853 DSBA-like thioredoxin domain YP_0017 IPR036249 Thioredoxin-like superfamily YP_0017 IPR017937 Thioredoxin, conserved site YP_0017 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL YP_0017 IPR013766 Thioredoxin domain YP_0018 IPR001098 DNA-directed DNA polymerase, family A, palm domain YP_0018 IPR036397 Ribonuclease H superfamily YP_0018 IPR012337 Ribonuclease H-like superfamily YP_0018 IPR002562 3'-5' exonuclease domain YP_0018 IPR029060 PIN-like domain superfamily YP_0018 IPR008918 Helix-hairpin-helix motif, class 2 YP_0018 IPR002298 DNA polymerase A YP_0018 IPR019760 DNA-directed DNA polymerase, family A, conserved site YP_0018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YP_0018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YP_0018 IPR018320 DNA polymerase 1 YP_0018 IPR020045 DNA polymerase I-like, H3TH domain YP_0018 IPR002421 5'-3' exonuclease, N-terminal YP_0019 IPR002686 Transposase IS200-like YP_0019 IPR036515 Transposase IS200-like superfamily YP_0020 IPR030393 EngB-type guanine nucleotide-binding (G) domain YP_0020 IPR006073 GTP binding domain YP_0020 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC YP_0020 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0021 IPR007336 Der GTPase activator YP_0022 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN YP_0022 IPR034505 Anaerobic coproporphyrinogen-III oxidase YP_0022 IPR010723 HemN, C-terminal YP_0022 IPR023404 Radical SAM, alpha/beta horseshoe YP_0022 IPR006638 Elp3/MiaB/NifB YP_0022 IPR007197 Radical SAM YP_0023 IPR003593 AAA+ ATPase domain YP_0023 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YP_0023 IPR025944 Sigma-54 interaction domain, conserved site YP_0023 IPR011006 CheY-like superfamily YP_0023 IPR009057 Homeobox-like domain superfamily YP_0023 IPR002197 DNA binding HTH domain, Fis-type YP_0023 IPR002078 RNA polymerase sigma factor 54 interaction domain YP_0023 IPR010114 DNA-binding transcriptional regulator NtrC YP_0023 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0023 IPR001789 Signal transduction response regulator, receiver domain YP_0023 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YP_0024 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0024 IPR005467 Histidine kinase domain YP_0024 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_0024 IPR003594 Histidine kinase/HSP90-like ATPase YP_0024 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_0024 IPR013767 PAS fold YP_0024 IPR000014 PAS domain YP_0024 IPR035965 PAS domain superfamily YP_0024 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_0025 IPR004809 Glutamine synthetase type I YP_0025 IPR027303 Glutamine synthetase, glycine-rich site YP_0025 IPR001637 Glutamine synthetase class-I, adenylation site YP_0025 IPR027302 Glutamine synthetase, N-terminal conserved site YP_0025 IPR036651 Glutamine synthetase, N-terminal domain superfamily YP_0025 IPR008147 Glutamine synthetase, beta-Grasp domain YP_0025 IPR008146 Glutamine synthetase, catalytic domain YP_0025 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YP_0028 IPR006439 HAD hydrolase, subfamily IA YP_0028 IPR036412 HAD-like superfamily YP_0028 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YP_0028 IPR023214 HAD superfamily YP_0028 IPR041492 Haloacid dehalogenase-like hydrolase YP_0029 IPR017039 Virulence factor BrkB YP_0029 IPR023679 Uncharacterised protein family UPF0761, bacterial YP_0030 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily YP_0030 IPR003732 D-aminoacyl-tRNA deacylase DTD YP_0031 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0031 IPR003593 AAA+ ATPase domain YP_0031 IPR001270 ClpA/B family YP_0031 IPR002611 IstB-like ATP-binding protein YP_0031 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0032 IPR001584 Integrase, catalytic core YP_0032 IPR012337 Ribonuclease H-like superfamily YP_0032 IPR017894 HTH domain, IS21 transposase-type YP_0032 IPR036397 Ribonuclease H superfamily YP_0032 IPR006120 Resolvase, HTH domain YP_0033 IPR029069 HotDog domain superfamily YP_0033 IPR012660 Thioesterase, putative YP_0033 IPR000182 GNAT domain YP_0033 IPR016181 Acyl-CoA N-acyltransferase YP_0034 IPR007844 AsmA YP_0035 IPR006042 Xanthine/uracil permease YP_0035 IPR006043 Xanthine/uracil/vitamin C permease YP_0036 IPR004445 Sodium/glutamate symport carrier protein GltS YP_0037 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_0037 IPR001650 Helicase, C-terminal YP_0037 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0037 IPR011545 DEAD/DEAH box helicase domain YP_0037 IPR033454 RecG, wedge domain YP_0037 IPR012340 Nucleic acid-binding, OB-fold YP_0037 IPR004609 ATP-dependent DNA helicase RecG YP_0038 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase YP_0038 IPR001537 tRNA/rRNA methyltransferase, SpoU type YP_0038 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal YP_0038 IPR029028 Alpha/beta knot methyltransferases YP_0038 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YP_0039 IPR007685 RelA/SpoT YP_0039 IPR002912 ACT domain YP_0039 IPR004811 RelA/SpoT family YP_0039 IPR004095 TGS YP_0039 IPR003607 HD/PDEase domain YP_0039 IPR033655 RelA, TGS domain YP_0039 IPR012676 TGS-like YP_0039 IPR012675 Beta-grasp domain superfamily YP_0040 IPR006110 RNA polymerase, subunit omega/K/RPB6 YP_0040 IPR012293 RNA polymerase subunit, RPB6/omega YP_0040 IPR003716 DNA-directed RNA polymerase, omega subunit YP_0040 IPR036161 RPB6/omega subunit-like superfamily YP_0041 IPR008144 Guanylate kinase-like domain YP_0041 IPR017665 Guanylate kinase YP_0041 IPR020590 Guanylate kinase, conserved site YP_0041 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0041 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YP_0042 IPR010994 RuvA domain 2-like YP_0042 IPR004150 NAD-dependent DNA ligase, OB-fold YP_0042 IPR012340 Nucleic acid-binding, OB-fold YP_0042 IPR013840 NAD-dependent DNA ligase, N-terminal YP_0042 IPR013839 NAD-dependent DNA ligase, adenylation YP_0042 IPR020923 DNA ligase B YP_0043 IPR005115 Uncharacterised domain UPF0126 YP_0044 IPR013527 YicC-like, N-terminal YP_0044 IPR005229 Conserved hypothetical protein CHP00255 YP_0044 IPR013551 Domain of unknown function DUF1732 YP_0045 IPR018336 Ribonuclease PH, conserved site YP_0045 IPR002381 Ribonuclease PH, bacterial-type YP_0045 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0045 IPR027408 PNPase/RNase PH domain superfamily YP_0045 IPR036345 Exoribonuclease, PH domain 2 superfamily YP_0045 IPR015847 Exoribonuclease, phosphorolytic domain 2 YP_0045 IPR001247 Exoribonuclease, phosphorolytic domain 1 YP_0046 IPR023031 Orotate phosphoribosyltransferase YP_0046 IPR004467 Orotate phosphoribosyl transferase domain YP_0046 IPR029057 Phosphoribosyltransferase-like YP_0046 IPR000836 Phosphoribosyltransferase domain YP_0047 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YP_0047 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YP_0047 IPR023769 Nucleoid occlusion factor SlmA YP_0047 IPR001647 DNA-binding HTH domain, TetR-type YP_0047 IPR009057 Homeobox-like domain superfamily YP_0048 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase YP_0048 IPR036157 dUTPase-like superfamily YP_0048 IPR029054 dUTPase-like YP_0048 IPR033704 dUTPase, trimeric YP_0049 IPR003382 Flavoprotein YP_0049 IPR036551 Flavin prenyltransferase-like YP_0049 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal YP_0049 IPR035929 CoaB-like superfamily YP_0049 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC YP_0050 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily YP_0050 IPR020891 Uncharacterised protein family UPF0758, conserved site YP_0050 IPR001405 Uncharacterised protein family UPF0758 YP_0050 IPR010994 RuvA domain 2-like YP_0050 IPR025657 RadC-like JAB domain YP_0050 IPR037518 MPN domain YP_0051 IPR034704 L28p-like YP_0051 IPR026569 Ribosomal protein L28/L24 YP_0051 IPR037147 Ribosomal protein L28/L24 superfamily YP_0051 IPR001383 Ribosomal protein L28 YP_0052 IPR038584 Ribosomal protein L33 superfamily YP_0052 IPR001705 Ribosomal protein L33 YP_0052 IPR018264 Ribosomal protein L33, conserved site YP_0052 IPR011332 Zinc-binding ribosomal protein YP_0053 IPR010663 Zinc finger, FPG/IleRS-type YP_0053 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type YP_0053 IPR010979 Ribosomal protein S13-like, H2TH YP_0053 IPR035937 MutM-like, N-terminal YP_0053 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain YP_0053 IPR020629 Formamidopyrimidine-DNA glycosylase YP_0053 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site YP_0053 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding YP_0054 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0054 IPR001980 Phosphopantetheine adenylyltransferase YP_0054 IPR004821 Cytidyltransferase-like domain YP_0055 IPR029044 Nucleotide-diphospho-sugar transferases YP_0055 IPR001173 Glycosyltransferase 2-like YP_0056 IPR039901 3-deoxy-D-manno-octulosonic acid transferase YP_0056 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily YP_0056 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal YP_0057 IPR011908 Lipopolysaccharide heptosyltransferase I YP_0057 IPR002201 Glycosyl transferase, family 9 YP_0058 IPR002201 Glycosyl transferase, family 9 YP_0058 IPR011910 ADP-heptose--LPS heptosyltransferase 2 YP_0059 IPR001509 NAD-dependent epimerase/dehydratase YP_0059 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase YP_0059 IPR036291 NAD(P)-binding domain superfamily YP_0060 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase YP_0060 IPR004839 Aminotransferase, class I/classII YP_0060 IPR015424 Pyridoxal phosphate-dependent transferase YP_0060 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_0060 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_0060 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YP_0061 IPR020843 Polyketide synthase, enoylreductase domain YP_0061 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site YP_0061 IPR013149 Alcohol dehydrogenase, C-terminal YP_0061 IPR011032 GroES-like superfamily YP_0061 IPR013154 Alcohol dehydrogenase, N-terminal YP_0061 IPR036291 NAD(P)-binding domain superfamily YP_0061 IPR004627 L-threonine 3-dehydrogenase YP_0063 IPR011055 Duplicated hybrid motif YP_0063 IPR016047 Peptidase M23 YP_0064 IPR011258 BPG-independent PGAM, N-terminal YP_0064 IPR006124 Metalloenzyme YP_0064 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily YP_0064 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent YP_0064 IPR017850 Alkaline-phosphatase-like, core domain superfamily YP_0065 IPR001763 Rhodanese-like domain YP_0065 IPR036873 Rhodanese-like domain superfamily YP_0066 IPR011900 Glutaredoxin, GrxC YP_0066 IPR036249 Thioredoxin-like superfamily YP_0066 IPR014025 Glutaredoxin subgroup YP_0066 IPR011767 Glutaredoxin active site YP_0066 IPR002109 Glutaredoxin YP_0067 IPR035958 SecB-like superfamily YP_0067 IPR003708 Bacterial protein export chaperone SecB YP_0068 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YP_0068 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YP_0068 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent YP_0068 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal YP_0068 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal YP_0068 IPR036291 NAD(P)-binding domain superfamily YP_0070 IPR042122 Serine acetyltransferase, N-terminal domain superfamily YP_0070 IPR011004 Trimeric LpxA-like superfamily YP_0070 IPR001451 Hexapeptide repeat YP_0070 IPR018357 Hexapeptide transferase, conserved site YP_0070 IPR010493 Serine acetyltransferase, N-terminal YP_0070 IPR005881 Serine O-acetyltransferase YP_0071 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YP_0071 IPR001537 tRNA/rRNA methyltransferase, SpoU type YP_0071 IPR029028 Alpha/beta knot methyltransferases YP_0071 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase YP_0072 IPR035451 Ada-like domain superfamily YP_0072 IPR004026 Ada DNA repair, metal-binding YP_0072 IPR016221 Bifunctional regulatory protein Ada YP_0072 IPR009057 Homeobox-like domain superfamily YP_0072 IPR018062 HTH domain AraC-type, conserved site YP_0072 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site YP_0072 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YP_0072 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain YP_0072 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain YP_0072 IPR018060 DNA binding HTH domain, AraC-type YP_0072 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily YP_0072 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0073 IPR038515 CpxA, periplasmic domain superfamily YP_0073 IPR003660 HAMP domain YP_0073 IPR003594 Histidine kinase/HSP90-like ATPase YP_0073 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0073 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_0073 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_0073 IPR005467 Histidine kinase domain YP_0073 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_0073 IPR032404 Two-component sensor protein CpxA, periplasmic domain YP_0074 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0074 IPR011006 CheY-like superfamily YP_0074 IPR039420 Transcriptional regulatory protein WalR-like YP_0074 IPR001789 Signal transduction response regulator, receiver domain YP_0074 IPR001867 OmpR/PhoB-type DNA-binding domain YP_0075 IPR012899 LTXXQ motif family protein YP_0077 IPR006842 Transposase (putative), YhgA-like YP_0077 IPR010106 Recombination-promoting nuclease RpnA YP_0079 IPR027469 Cation efflux transmembrane domain superfamily YP_0079 IPR002524 Cation efflux protein YP_0079 IPR023783 Cation efflux pump FieF YP_0079 IPR036837 Cation efflux protein, cytoplasmic domain superfamily YP_0079 IPR027470 Cation efflux protein, cytoplasmic domain YP_0080 IPR035966 Phosphofructokinase superfamily YP_0080 IPR000023 Phosphofructokinase domain YP_0080 IPR015912 Phosphofructokinase, conserved site YP_0080 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type YP_0080 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic YP_0080 IPR022953 ATP-dependent 6-phosphofructokinase YP_0081 IPR000957 Sulphate/thiosulphate-binding, conserved site YP_0081 IPR034408 Sulphate/thiosulphate-binding site YP_0081 IPR005669 Thiosulphate/Sulfate-binding protein YP_0083 IPR030676 Citrate carrier CitT-related YP_0083 IPR001898 Solute carrier family 13 YP_0085 IPR001270 ClpA/B family YP_0085 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0085 IPR002611 IstB-like ATP-binding protein YP_0085 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0085 IPR003593 AAA+ ATPase domain YP_0086 IPR036397 Ribonuclease H superfamily YP_0086 IPR006120 Resolvase, HTH domain YP_0086 IPR001584 Integrase, catalytic core YP_0086 IPR017894 HTH domain, IS21 transposase-type YP_0086 IPR012337 Ribonuclease H-like superfamily YP_0087 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related YP_0087 IPR024078 Putative deacetylase LmbE-like domain superfamily YP_0088 IPR005119 LysR, substrate-binding YP_0088 IPR000847 Transcription regulator HTH, LysR YP_0088 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0088 IPR036390 Winged helix DNA-binding domain superfamily YP_0089 IPR013785 Aldolase-type TIM barrel YP_0089 IPR020861 Triosephosphate isomerase, active site YP_0089 IPR000652 Triosephosphate isomerase YP_0089 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic YP_0089 IPR035990 Triosephosphate isomerase superfamily YP_0090 IPR009918 Protein of unknown function DUF1454 YP_0091 IPR008523 Protein of unknown function DUF805 YP_0092 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YP_0092 IPR017927 FAD-binding domain, ferredoxin reductase-type YP_0092 IPR017938 Riboflavin synthase-like beta-barrel YP_0092 IPR001433 Oxidoreductase FAD/NAD(P)-binding YP_0092 IPR033892 Ferredoxin--NADP reductase, bacteria YP_0092 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_0093 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase YP_0094 IPR018484 Carbohydrate kinase, FGGY, N-terminal YP_0094 IPR005999 Glycerol kinase YP_0094 IPR018485 Carbohydrate kinase, FGGY, C-terminal YP_0094 IPR000577 Carbohydrate kinase, FGGY YP_0094 IPR018483 Carbohydrate kinase, FGGY, conserved site YP_0095 IPR000425 Major intrinsic protein YP_0095 IPR023271 Aquaporin-like YP_0095 IPR022357 Major intrinsic protein, conserved site YP_0097 IPR009252 Cell division protein ZapB YP_0098 IPR036515 Transposase IS200-like superfamily YP_0098 IPR002686 Transposase IS200-like YP_0100 IPR003593 AAA+ ATPase domain YP_0100 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0100 IPR017871 ABC transporter, conserved site YP_0100 IPR003439 ABC transporter-like YP_0100 IPR005074 Peptidase C39, bacteriocin processing YP_0100 IPR039421 Type I protein exporter YP_0100 IPR036640 ABC transporter type 1, transmembrane domain superfamily YP_0100 IPR033838 Colicin V processing peptidase YP_0100 IPR011527 ABC transporter type 1, transmembrane domain YP_0101 IPR006144 Secretion protein HlyD, conserved site YP_0101 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_0105 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria YP_0105 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily YP_0105 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein YP_0105 IPR010203 Regulator of ribonuclease activity A YP_0106 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_0106 IPR000537 UbiA prenyltransferase family YP_0106 IPR026046 UbiA prenyltransferase domain containing protein 1 YP_0107 IPR003593 AAA+ ATPase domain YP_0107 IPR004491 Heat shock protein HslU YP_0107 IPR019489 Clp ATPase, C-terminal YP_0107 IPR003959 ATPase, AAA-type, core YP_0107 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0108 IPR001353 Proteasome, subunit alpha/beta YP_0108 IPR022281 ATP-dependent protease, HslV subunit YP_0108 IPR029055 Nucleophile aminohydrolases, N-terminal YP_0108 IPR023333 Proteasome B-type subunit YP_0109 IPR036680 Sporulation-like domain superfamily YP_0109 IPR007730 Sporulation-like domain YP_0109 IPR011930 Cell division protein FtsN YP_0110 IPR028082 Periplasmic binding protein-like I YP_0110 IPR000843 LacI-type HTH domain YP_0110 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_0111 IPR001650 Helicase, C-terminal YP_0111 IPR005259 Primosomal protein N' YP_0111 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_0111 IPR011545 DEAD/DEAH box helicase domain YP_0111 IPR041222 Primosomal protein N', 3' DNA-binding domain YP_0111 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily YP_0111 IPR041236 Primosomal protein N, C-terminal domain YP_0111 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0111 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain YP_0112 IPR034704 L28p-like YP_0112 IPR002150 Ribosomal protein L31 YP_0112 IPR027491 Ribosomal protein L31 type A YP_0112 IPR042105 Ribosomal protein L31 superfamily YP_0113 IPR038972 Inner membrane protein YiaA-like YP_0113 IPR008024 YiaAB two helix YP_0116 IPR002084 Methionine repressor MetJ YP_0116 IPR010985 Ribbon-helix-helix YP_0116 IPR023453 Methionine repressor MetJ domain superfamily YP_0117 IPR011821 O-succinylhomoserine (thiol)-lyase YP_0117 IPR015424 Pyridoxal phosphate-dependent transferase YP_0117 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_0117 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_0117 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_0118 IPR036291 NAD(P)-binding domain superfamily YP_0118 IPR018042 Aspartate kinase, conserved site YP_0118 IPR001341 Aspartate kinase YP_0118 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I YP_0118 IPR036393 Acetylglutamate kinase-like superfamily YP_0118 IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain YP_0118 IPR001048 Aspartate/glutamate/uridylate kinase YP_0118 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding YP_0118 IPR001342 Homoserine dehydrogenase, catalytic YP_0118 IPR019811 Homoserine dehydrogenase, conserved site YP_0119 IPR004620 5,10-methylenetetrahydrofolate reductase YP_0119 IPR029041 FAD-linked oxidoreductase-like YP_0119 IPR003171 Methylenetetrahydrofolate reductase YP_0120 IPR025948 HTH-like domain YP_0120 IPR038965 Transposase InsF-like YP_0120 IPR001584 Integrase, catalytic core YP_0120 IPR012337 Ribonuclease H-like superfamily YP_0120 IPR036397 Ribonuclease H superfamily YP_0122 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0122 IPR037171 NagB/RpiA transferase-like YP_0122 IPR001034 DeoR-type HTH domain YP_0122 IPR036390 Winged helix DNA-binding domain superfamily YP_0122 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YP_0122 IPR014036 DeoR C-terminal sensor domain YP_0123 IPR023662 Rhomboid protease GlpG YP_0123 IPR035952 Rhomboid-like superfamily YP_0123 IPR022764 Peptidase S54, rhomboid domain YP_0123 IPR022732 Peptidase S54, GlpG peptidase, N-terminal YP_0123 IPR038236 GlpG peptidase, N-terminal domain superfamily YP_0124 IPR023695 Thiosulfate sulfurtransferase, bacterial YP_0124 IPR036873 Rhodanese-like domain superfamily YP_0124 IPR001763 Rhodanese-like domain YP_0125 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0125 IPR000792 Transcription regulator LuxR, C-terminal YP_0125 IPR023768 Transcriptional regulator HTH-type, MalT YP_0125 IPR041617 MalT-like TPR region YP_0125 IPR011990 Tetratricopeptide-like helical domain superfamily YP_0125 IPR016032 Signal transduction response regulator, C-terminal effector YP_0125 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0127 IPR017853 Glycoside hydrolase superfamily YP_0127 IPR003385 Glycoside hydrolase, family 77 YP_0128 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal YP_0128 IPR035903 HesB-like domain superfamily YP_0128 IPR034904 Fe-S cluster assembly domain superfamily YP_0128 IPR000361 FeS cluster biogenesis YP_0128 IPR017726 Fe/S biogenesis protein NfuA YP_0129 IPR029057 Phosphoribosyltransferase-like YP_0129 IPR005222 Competence protein ComF YP_0129 IPR000836 Phosphoribosyltransferase domain YP_0130 IPR029058 Alpha/Beta hydrolase fold YP_0130 IPR000073 Alpha/beta hydrolase fold-1 YP_0130 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase YP_0131 IPR025543 Dodecin-like YP_0131 IPR010854 Domain of unknown function DUF1471 YP_0131 IPR036275 YdgH-like superfamily YP_0132 IPR036390 Winged helix DNA-binding domain superfamily YP_0132 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0132 IPR023732 Probable [Fe-S]-dependent transcriptional repressor YP_0132 IPR015102 Transcriptional regulator HTH-type, FeoC YP_0133 IPR003373 Ferrous iron transport protein B YP_0133 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain YP_0133 IPR011640 Ferrous iron transport protein B, C-terminal YP_0133 IPR005225 Small GTP-binding protein domain YP_0133 IPR041069 FeoB, cytosolic helical domain YP_0133 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0133 IPR030389 FeoB-type guanine nucleotide-binding (G) domain YP_0134 IPR007167 Ferrous iron transporter FeoA domain YP_0134 IPR008988 Transcriptional repressor, C-terminal YP_0134 IPR038157 Ferrous iron transporter, core domain YP_0135 IPR012340 Nucleic acid-binding, OB-fold YP_0135 IPR041692 HHH domain 9 YP_0135 IPR012337 Ribonuclease H-like superfamily YP_0135 IPR037027 YqgF/RNase H-like domain superfamily YP_0135 IPR032639 Tex protein, YqgF-like domain YP_0135 IPR022967 RNA-binding domain, S1 YP_0135 IPR003029 S1 domain YP_0135 IPR023323 Tex-like domain superfamily YP_0135 IPR023319 Tex-like protein, HTH domain superfamily YP_0135 IPR018974 Tex-like protein, N-terminal YP_0135 IPR010994 RuvA domain 2-like YP_0135 IPR006641 YqgF/RNase H-like domain YP_0136 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal YP_0136 IPR023459 Transcription elongation factor GreA/GreB family YP_0136 IPR006358 Transcription elongation factor GreB YP_0136 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily YP_0136 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YP_0136 IPR028624 Transcription elongation factor GreA/GreB YP_0136 IPR018151 Transcription elongation factor, GreA/GreB, conserved site YP_0136 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily YP_0137 IPR001867 OmpR/PhoB-type DNA-binding domain YP_0137 IPR016032 Signal transduction response regulator, C-terminal effector YP_0137 IPR001789 Signal transduction response regulator, receiver domain YP_0137 IPR039420 Transcriptional regulatory protein WalR-like YP_0137 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0137 IPR011006 CheY-like superfamily YP_0138 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_0138 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_0138 IPR005467 Histidine kinase domain YP_0138 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0138 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_0138 IPR003594 Histidine kinase/HSP90-like ATPase YP_0138 IPR003660 HAMP domain YP_0139 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising YP_0139 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal YP_0139 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal YP_0139 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site YP_0140 IPR000397 Heat shock protein Hsp33 YP_0140 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily YP_0140 IPR016154 Heat shock protein Hsp33, C-terminal YP_0140 IPR016153 Heat shock protein Hsp33, N-terminal YP_0141 IPR036986 RNA-binding S4 domain superfamily YP_0141 IPR002942 RNA-binding S4 domain YP_0141 IPR025708 Heat shock protein 15 YP_0142 IPR023214 HAD superfamily YP_0142 IPR041492 Haloacid dehalogenase-like hydrolase YP_0142 IPR006439 HAD hydrolase, subfamily IA YP_0142 IPR036412 HAD-like superfamily YP_0143 IPR010771 Intracellular growth attenuator IgaA YP_0145 IPR000086 NUDIX hydrolase domain YP_0145 IPR020084 NUDIX hydrolase, conserved site YP_0145 IPR015797 NUDIX hydrolase-like domain superfamily YP_0146 IPR001264 Glycosyl transferase, family 51 YP_0146 IPR001460 Penicillin-binding protein, transpeptidase YP_0146 IPR023346 Lysozyme-like domain superfamily YP_0146 IPR031376 Penicillin-binding protein, OB-like domain YP_0146 IPR012338 Beta-lactamase/transpeptidase-like YP_0146 IPR036950 Penicillin binding protein transglycosylase domain YP_0152 IPR001775 GspD/PilQ family YP_0152 IPR013355 Type IV pilus secretin PilQ YP_0152 IPR011662 Secretin/TonB, short N-terminal domain YP_0152 IPR004846 Type II/III secretion system YP_0152 IPR004845 Type II secretion system GspD, conserved site YP_0152 IPR038591 NolW-like superfamily YP_0152 IPR005644 NolW-like YP_0153 IPR023000 Shikimate kinase, conserved site YP_0153 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0153 IPR000623 Shikimate kinase/Threonine synthase-like 1 YP_0153 IPR031322 Shikimate kinase/gluconokinase YP_0154 IPR030963 3-dehydroquinate synthase family YP_0154 IPR016037 3-dehydroquinate synthase AroB YP_0154 IPR030960 3-dehydroquinate synthase domain YP_0155 IPR007730 Sporulation-like domain YP_0155 IPR036680 Sporulation-like domain superfamily YP_0156 IPR012327 D12 class N6 adenine-specific DNA methyltransferase YP_0156 IPR023095 Adenine-specific methyltransferase, domain 2 YP_0156 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YP_0156 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0156 IPR012263 Adenine modification methylase, M.EcoRV-type YP_0157 IPR013785 Aldolase-type TIM barrel YP_0157 IPR026019 Ribulose-phosphate 3-epimerase YP_0157 IPR000056 Ribulose-phosphate 3-epimerase-like YP_0157 IPR011060 Ribulose-phosphate binding barrel YP_0158 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic YP_0158 IPR041492 Haloacid dehalogenase-like hydrolase YP_0158 IPR006439 HAD hydrolase, subfamily IA YP_0158 IPR036412 HAD-like superfamily YP_0158 IPR037512 Phosphoglycolate phosphatase, prokaryotic YP_0158 IPR023214 HAD superfamily YP_0158 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YP_0159 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0159 IPR002305 Aminoacyl-tRNA synthetase, class Ic YP_0159 IPR002306 Tryptophan-tRNA ligase YP_0159 IPR024109 Tryptophan-tRNA ligase, bacterial-type YP_0159 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YP_0160 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site YP_0160 IPR019478 Sirohaem synthase, dimerisation domain YP_0160 IPR028281 Siroheme synthase, central domain YP_0160 IPR006367 Sirohaem synthase, N-terminal YP_0160 IPR037115 Sirohaem synthase, dimerisation domain superfamily YP_0160 IPR000878 Tetrapyrrole methylase YP_0160 IPR035996 Tetrapyrrole methylase superfamily YP_0160 IPR014777 Tetrapyrrole methylase, subdomain 1 YP_0160 IPR012409 Sirohaem synthase YP_0160 IPR014776 Tetrapyrrole methylase, subdomain 2 YP_0160 IPR006366 Uroporphyrin-III C-methyltransferase YP_0160 IPR036291 NAD(P)-binding domain superfamily YP_0161 IPR023271 Aquaporin-like YP_0161 IPR000292 Formate/nitrite transporter YP_0161 IPR024002 Formate/nitrite transporter, conserved site YP_0162 IPR017881 Nitrite reductase (NADH) small subunit YP_0162 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily YP_0162 IPR012748 Rieske-like [2Fe-2S] domain, NirD-type YP_0163 IPR007419 BFD-like [2Fe-2S]-binding domain YP_0163 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB YP_0163 IPR017121 Nitrite reductase [NAD(P)H], large subunit YP_0163 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain YP_0163 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily YP_0163 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0163 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily YP_0163 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site YP_0163 IPR023753 FAD/NAD(P)-binding domain YP_0163 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal YP_0163 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain YP_0164 IPR011059 Metal-dependent hydrolase, composite domain superfamily YP_0164 IPR013108 Amidohydrolase 3 YP_0164 IPR032466 Metal-dependent hydrolase YP_0165 IPR023528 Major facilitator superfamily transporter, TsgA YP_0165 IPR036259 MFS transporter superfamily YP_0165 IPR020846 Major facilitator superfamily domain YP_0165 IPR011701 Major facilitator superfamily YP_0167 IPR000843 LacI-type HTH domain YP_0167 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_0167 IPR028082 Periplasmic binding protein-like I YP_0169 IPR029000 Cyclophilin-like domain superfamily YP_0169 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain YP_0169 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site YP_0170 IPR033186 Helicase HerA-like C-terminal YP_0170 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0171 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain YP_0171 IPR017926 Glutamine amidotransferase YP_0171 IPR029062 Class I glutamine amidotransferase-like YP_0172 IPR004636 Acetylornithine/Succinylornithine transaminase family YP_0172 IPR005814 Aminotransferase class-III YP_0172 IPR015424 Pyridoxal phosphate-dependent transferase YP_0172 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_0172 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_0172 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria YP_0173 IPR032692 Integral membrane protein YccS, N-terminal YP_0173 IPR010020 Integral membrane protein, YccS/YhfK YP_0174 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0174 IPR018488 Cyclic nucleotide-binding, conserved site YP_0174 IPR000595 Cyclic nucleotide-binding domain YP_0174 IPR012318 Crp-type HTH domain YP_0174 IPR014710 RmlC-like jelly roll fold YP_0174 IPR018335 Transcription regulator HTH, Crp-type, conserved site YP_0174 IPR036390 Winged helix DNA-binding domain superfamily YP_0174 IPR018490 Cyclic nucleotide-binding-like YP_0175 IPR015946 K homology domain-like, alpha/beta YP_0175 IPR036102 OsmC/Ohr superfamily YP_0175 IPR003718 OsmC/Ohr family YP_0177 IPR006083 Phosphoribulokinase/uridine kinase YP_0177 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0177 IPR006082 Phosphoribulokinase YP_0178 IPR036685 YehU-like superfamily YP_0178 IPR010648 Uncharacterised protein family UPF0270 YP_0179 IPR000073 Alpha/beta hydrolase fold-1 YP_0179 IPR012020 AB hydrolase 4 family YP_0179 IPR000952 AB hydrolase 4, conserved site YP_0179 IPR029058 Alpha/Beta hydrolase fold YP_0180 IPR001123 Amino acid exporter protein, LeuE-type YP_0181 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_0181 IPR010068 Taurine ABC transporter, substrate-binding protein TauA YP_0181 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YP_0182 IPR003593 AAA+ ATPase domain YP_0182 IPR003439 ABC transporter-like YP_0182 IPR017871 ABC transporter, conserved site YP_0182 IPR015859 ABC transporter, taurine import, TauD YP_0182 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0183 IPR035906 MetI-like superfamily YP_0183 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_0184 IPR003819 TauD/TfdA-like domain YP_0184 IPR042098 Taurine dioxygenase TauD-like superfamily YP_0186 IPR029044 Nucleotide-diphospho-sugar transferases YP_0186 IPR001173 Glycosyltransferase 2-like YP_0187 IPR003593 AAA+ ATPase domain YP_0187 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0187 IPR032781 ABC-transporter extension domain YP_0187 IPR003439 ABC transporter-like YP_0187 IPR017871 ABC transporter, conserved site YP_0188 IPR029039 Flavoprotein-like superfamily YP_0188 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG YP_0188 IPR003680 Flavodoxin-like fold YP_0189 IPR004771 K+/H+ exchanger YP_0189 IPR020884 Glutathione-regulated potassium-efflux system protein KefB YP_0189 IPR036291 NAD(P)-binding domain superfamily YP_0189 IPR038770 Sodium/solute symporter superfamily YP_0189 IPR006153 Cation/H+ exchanger YP_0189 IPR003148 Regulator of K+ conductance, N-terminal YP_0190 IPR012658 Conserved hypothetical protein CHP02443 YP_0191 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YP_0193 IPR007236 SlyX YP_0194 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YP_0194 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YP_0194 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily YP_0195 IPR039445 Transcriptional regulator DauR-like, HTH domain YP_0195 IPR039446 Transcriptional regulator DauR-like YP_0195 IPR013559 YheO-like YP_0196 IPR017463 Sulphur relay, TusD/DsrE YP_0196 IPR003787 Sulphur relay, DsrE/F-like protein YP_0196 IPR027396 DsrEFH-like YP_0197 IPR003787 Sulphur relay, DsrE/F-like protein YP_0197 IPR037450 Sulphur relay, TusC YP_0197 IPR027396 DsrEFH-like YP_0197 IPR017462 Sulphur relay, TusC/DsrF YP_0198 IPR007215 Sulphur relay, TusB/DsrH YP_0198 IPR027396 DsrEFH-like YP_0198 IPR023526 Sulphur relay, TusB YP_0199 IPR012340 Nucleic acid-binding, OB-fold YP_0199 IPR006032 Ribosomal protein S12/S23 YP_0199 IPR005679 Ribosomal protein S12, bacterial-type YP_0200 IPR036823 Ribosomal protein S7 domain superfamily YP_0200 IPR000235 Ribosomal protein S5/S7 YP_0200 IPR005717 Ribosomal protein S7, bacterial/organellar-type YP_0200 IPR023798 Ribosomal protein S7 domain YP_0200 IPR020606 Ribosomal protein S7, conserved site YP_0201 IPR000795 Transcription factor, GTP-binding domain YP_0201 IPR041095 Elongation Factor G, domain II YP_0201 IPR009022 Elongation factor G, domain III YP_0201 IPR005225 Small GTP-binding protein domain YP_0201 IPR035649 EFG, domain V YP_0201 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_0201 IPR009000 Translation protein, beta-barrel domain superfamily YP_0201 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0201 IPR004540 Translation elongation factor EFG/EF2 YP_0201 IPR005517 Translation elongation factor EFG/EF2, domain IV YP_0201 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0201 IPR031157 Tr-type G domain, conserved site YP_0201 IPR035647 EF-G domain III/V-like YP_0201 IPR000640 Elongation factor EFG, domain V-like YP_0201 IPR004161 Translation elongation factor EFTu-like, domain 2 YP_0202 IPR033720 Elongation factor Tu, domain 2 YP_0202 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain YP_0202 IPR004161 Translation elongation factor EFTu-like, domain 2 YP_0202 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YP_0202 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YP_0202 IPR009000 Translation protein, beta-barrel domain superfamily YP_0202 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YP_0202 IPR000795 Transcription factor, GTP-binding domain YP_0202 IPR031157 Tr-type G domain, conserved site YP_0202 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0202 IPR005225 Small GTP-binding protein domain YP_0203 IPR002686 Transposase IS200-like YP_0203 IPR036515 Transposase IS200-like superfamily YP_0204 IPR007419 BFD-like [2Fe-2S]-binding domain YP_0204 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily YP_0205 IPR012347 Ferritin-like YP_0205 IPR009040 Ferritin-like diiron domain YP_0205 IPR009078 Ferritin-like superfamily YP_0205 IPR008331 Ferritin/DPS protein domain YP_0205 IPR002024 Bacterioferritin YP_0206 IPR001848 Ribosomal protein S10 YP_0206 IPR018268 Ribosomal protein S10, conserved site YP_0206 IPR036838 Ribosomal protein S10 domain superfamily YP_0206 IPR027486 Ribosomal protein S10 domain YP_0207 IPR019927 Ribosomal protein L3, bacterial/organelle-type YP_0207 IPR019926 Ribosomal protein L3, conserved site YP_0207 IPR000597 Ribosomal protein L3 YP_0207 IPR009000 Translation protein, beta-barrel domain superfamily YP_0208 IPR013005 50S ribosomal protein uL4 YP_0208 IPR002136 Ribosomal protein L4/L1e YP_0208 IPR023574 Ribosomal protein L4 domain superfamily YP_0209 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YP_0209 IPR013025 Ribosomal protein L25/L23 YP_0209 IPR012678 Ribosomal protein L23/L15e core domain superfamily YP_0209 IPR001014 Ribosomal protein L23/L25, conserved site YP_0210 IPR008991 Translation protein SH3-like domain superfamily YP_0210 IPR014726 Ribosomal protein L2, domain 3 YP_0210 IPR022671 Ribosomal protein L2, conserved site YP_0210 IPR022669 Ribosomal protein L2, C-terminal YP_0210 IPR005880 Ribosomal protein L2, bacterial/organellar-type YP_0210 IPR014722 Ribosomal protein L2, domain 2 YP_0210 IPR022666 Ribosomal Proteins L2, RNA binding domain YP_0210 IPR012340 Nucleic acid-binding, OB-fold YP_0210 IPR002171 Ribosomal protein L2 YP_0211 IPR023575 Ribosomal protein S19, superfamily YP_0211 IPR005732 Ribosomal protein S19, bacterial-type YP_0211 IPR002222 Ribosomal protein S19/S15 YP_0211 IPR020934 Ribosomal protein S19 conserved site YP_0212 IPR036394 Ribosomal protein L22/L17 superfamily YP_0212 IPR001063 Ribosomal protein L22/L17 YP_0212 IPR018260 Ribosomal protein L22/L17, conserved site YP_0212 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type YP_0213 IPR004087 K Homology domain YP_0213 IPR015946 K homology domain-like, alpha/beta YP_0213 IPR004044 K Homology domain, type 2 YP_0213 IPR009019 K homology domain superfamily, prokaryotic type YP_0213 IPR005704 Ribosomal protein S3, bacterial-type YP_0213 IPR001351 Ribosomal protein S3, C-terminal YP_0213 IPR036419 Ribosomal protein S3, C-terminal domain superfamily YP_0213 IPR018280 Ribosomal protein S3, conserved site YP_0214 IPR000114 Ribosomal protein L16 YP_0214 IPR016180 Ribosomal protein L10e/L16 YP_0214 IPR020798 Ribosomal protein L16, conserved site YP_0214 IPR036920 Ribosomal protein L10e/L16 superfamily YP_0215 IPR036049 Ribosomal protein L29/L35 superfamily YP_0215 IPR001854 Ribosomal protein L29/L35 YP_0215 IPR018254 Ribosomal protein L29, conserved site YP_0216 IPR019979 Ribosomal protein S17, conserved site YP_0216 IPR000266 Ribosomal protein S17/S11 YP_0216 IPR012340 Nucleic acid-binding, OB-fold YP_0216 IPR019984 30S ribosomal protein S17 YP_0217 IPR036853 Ribosomal protein L14 superfamily YP_0217 IPR000218 Ribosomal protein L14P YP_0217 IPR019972 Ribosomal protein L14P, conserved site YP_0217 IPR005745 Ribosomal protein L14P, bacterial-type YP_0218 IPR005824 KOW YP_0218 IPR041988 Ribosomal Protein L26/L24, KOW domain YP_0218 IPR008991 Translation protein SH3-like domain superfamily YP_0218 IPR003256 Ribosomal protein L24 YP_0218 IPR005825 Ribosomal protein L24/L26, conserved site YP_0218 IPR014722 Ribosomal protein L2, domain 2 YP_0219 IPR022803 Ribosomal protein L5 domain superfamily YP_0219 IPR031309 Ribosomal protein L5, C-terminal YP_0219 IPR031310 Ribosomal protein L5, N-terminal YP_0219 IPR002132 Ribosomal protein L5 YP_0219 IPR020930 Ribosomal protein L5, bacterial-type YP_0220 IPR018271 Ribosomal protein S14, conserved site YP_0220 IPR001209 Ribosomal protein S14 YP_0220 IPR023036 Ribosomal protein S14, bacterial/plastid YP_0221 IPR000630 Ribosomal protein S8 YP_0221 IPR035987 Ribosomal protein S8 superfamily YP_0222 IPR019906 Ribosomal protein L6, bacterial-type YP_0222 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily YP_0222 IPR020040 Ribosomal protein L6, alpha-beta domain YP_0222 IPR000702 Ribosomal protein L6 YP_0222 IPR002358 Ribosomal protein L6, conserved site YP_0223 IPR005484 Ribosomal protein L18 YP_0223 IPR004389 Ribosomal protein L18, bacterial-type YP_0224 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0224 IPR005324 Ribosomal protein S5, C-terminal YP_0224 IPR005712 Ribosomal protein S5, bacterial-type YP_0224 IPR018192 Ribosomal protein S5, N-terminal, conserved site YP_0224 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_0224 IPR013810 Ribosomal protein S5, N-terminal YP_0224 IPR000851 Ribosomal protein S5 YP_0225 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily YP_0225 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain YP_0225 IPR005996 Ribosomal protein L30, bacterial-type YP_0225 IPR018038 Ribosomal protein L30, conserved site YP_0226 IPR036227 Ribosomal L18e/L15P superfamily YP_0226 IPR005749 Ribosomal protein L15, bacterial-type YP_0226 IPR001196 Ribosomal protein L15, conserved site YP_0226 IPR021131 Ribosomal protein L18e/L15P YP_0226 IPR030878 Ribosomal protein L15 YP_0227 IPR002208 SecY/SEC61-alpha family YP_0227 IPR026593 Protein translocase subunit SecY YP_0227 IPR030659 SecY conserved site YP_0227 IPR023201 SecY domain superfamily YP_0228 IPR035977 Ribosomal protein L36 superfamily YP_0228 IPR000473 Ribosomal protein L36 YP_0229 IPR019980 Ribosomal protein S13, bacterial-type YP_0229 IPR010979 Ribosomal protein S13-like, H2TH YP_0229 IPR018269 Ribosomal protein S13, conserved site YP_0229 IPR027437 30s ribosomal protein S13, C-terminal YP_0229 IPR001892 Ribosomal protein S13 YP_0230 IPR018102 Ribosomal S11, conserved site YP_0230 IPR019981 Ribosomal protein S11, bacterial-type YP_0230 IPR036967 Ribosomal protein S11 superfamily YP_0230 IPR001971 Ribosomal protein S11 YP_0231 IPR002942 RNA-binding S4 domain YP_0231 IPR022801 Ribosomal protein S4/S9 YP_0231 IPR001912 Ribosomal protein S4/S9, N-terminal YP_0231 IPR005709 Ribosomal protein S4, bacterial-type YP_0231 IPR036986 RNA-binding S4 domain superfamily YP_0231 IPR018079 Ribosomal protein S4, conserved site YP_0232 IPR036603 RNA polymerase, RBP11-like subunit YP_0232 IPR011773 DNA-directed RNA polymerase, alpha subunit YP_0232 IPR036643 DNA-directed RNA polymerase, insert domain superfamily YP_0232 IPR011260 RNA polymerase, alpha subunit, C-terminal YP_0232 IPR011262 DNA-directed RNA polymerase, insert domain YP_0232 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type YP_0233 IPR036373 Ribosomal protein L17 superfamily YP_0233 IPR000456 Ribosomal protein L17 YP_0234 IPR009061 Putative DNA-binding domain superfamily YP_0234 IPR000551 MerR-type HTH domain YP_0234 IPR011788 Zn(II)-responsive transcriptional regulator YP_0235 IPR005589 Alternative ribosome-rescue factor A YP_0236 IPR036019 Gated mechanosensitive channel YP_0236 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L YP_0236 IPR001185 Large-conductance mechanosensitive channel YP_0236 IPR019823 Large-conductance mechanosensitive channel, conserved site YP_0237 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YP_0237 IPR006036 Potassium uptake protein TrkA YP_0237 IPR006037 Regulator of K+ conductance, C-terminal YP_0237 IPR036291 NAD(P)-binding domain superfamily YP_0237 IPR003148 Regulator of K+ conductance, N-terminal YP_0238 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0238 IPR004573 rRNA small subunit methyltransferase B YP_0238 IPR023267 RNA (C5-cytosine) methyltransferase YP_0238 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae YP_0238 IPR006027 NusB/RsmB/TIM44 YP_0238 IPR035926 NusB-like superfamily YP_0238 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site YP_0238 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type YP_0239 IPR005793 Formyl transferase, C-terminal YP_0239 IPR036477 Formyl transferase, N-terminal domain superfamily YP_0239 IPR011034 Formyl transferase-like, C-terminal domain superfamily YP_0239 IPR001555 Phosphoribosylglycinamide formyltransferase, active site YP_0239 IPR002376 Formyl transferase, N-terminal YP_0239 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain YP_0239 IPR037022 Formyl transferase, C-terminal domain superfamily YP_0239 IPR005794 Methionyl-tRNA formyltransferase YP_0240 IPR023635 Peptide deformylase YP_0240 IPR036821 Peptide deformylase superfamily YP_0241 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0241 IPR003488 DNA recombination-mediator protein A YP_0241 IPR041614 DprA, winged helix domain YP_0242 IPR007456 Smg YP_0243 IPR013498 DNA topoisomerase, type IA, zn finger YP_0243 IPR000380 DNA topoisomerase, type IA YP_0244 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YP_0244 IPR023535 Threonylcarbamoyl-AMP synthase YP_0244 IPR006070 YrdC-like domain YP_0245 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_0245 IPR036291 NAD(P)-binding domain superfamily YP_0245 IPR041121 SDH, C-terminal YP_0245 IPR011342 Shikimate dehydrogenase YP_0245 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal YP_0245 IPR022893 Shikimate dehydrogenase family YP_0246 IPR011004 Trimeric LpxA-like superfamily YP_0246 IPR001451 Hexapeptide repeat YP_0247 IPR009057 Homeobox-like domain superfamily YP_0247 IPR002514 Transposase IS3/IS911family YP_0248 IPR025948 HTH-like domain YP_0248 IPR012337 Ribonuclease H-like superfamily YP_0248 IPR001584 Integrase, catalytic core YP_0248 IPR036397 Ribonuclease H superfamily YP_0249 IPR003593 AAA+ ATPase domain YP_0249 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0249 IPR002611 IstB-like ATP-binding protein YP_0249 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0249 IPR001270 ClpA/B family YP_0250 IPR012337 Ribonuclease H-like superfamily YP_0250 IPR036397 Ribonuclease H superfamily YP_0250 IPR017894 HTH domain, IS21 transposase-type YP_0250 IPR001584 Integrase, catalytic core YP_0250 IPR006120 Resolvase, HTH domain YP_0251 IPR036515 Transposase IS200-like superfamily YP_0251 IPR002686 Transposase IS200-like YP_0252 IPR005584 DNA gyrase inhibitor YacG YP_0252 IPR013088 Zinc finger, NHR/GATA-type YP_0253 IPR036268 ZapD domain superfamily YP_0253 IPR009777 Cell division protein ZapD YP_0253 IPR027462 Z ring-associated protein D, C-terminal YP_0254 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0254 IPR001977 Dephospho-CoA kinase YP_0256 IPR001093 IMP dehydrogenase/GMP reductase YP_0256 IPR005993 GMP reductase YP_0256 IPR015875 IMP dehydrogenase / GMP reductase, conserved site YP_0256 IPR013785 Aldolase-type TIM barrel YP_0257 IPR018076 Type II secretion system F domain YP_0257 IPR042094 Type II secretion system F domain superfamily YP_0257 IPR003004 GspF/PilC family YP_0257 IPR001992 Type II secretion system conserved site YP_0258 IPR001482 Type II/IV secretion system protein YP_0258 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0258 IPR007831 General secretory system II, protein E, N-terminal YP_0259 IPR012902 Prokaryotic N-terminal methylation site YP_0260 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily YP_0260 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal YP_0260 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal YP_0260 IPR013785 Aldolase-type TIM barrel YP_0260 IPR004393 Nicotinate-nucleotide pyrophosphorylase YP_0260 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD YP_0260 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal YP_0261 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YP_0261 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily YP_0262 IPR031347 Protein AmpE YP_0263 IPR004840 Amino acid permease, conserved site YP_0263 IPR004841 Amino acid permease/ SLC12A domain YP_0264 IPR036390 Winged helix DNA-binding domain superfamily YP_0264 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0264 IPR000524 Transcription regulator HTH, GntR YP_0264 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_0264 IPR011711 GntR, C-terminal YP_0265 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YP_0265 IPR029061 Thiamin diphosphate-binding fold YP_0265 IPR041621 Pyruvate dehydrogenase E1 component, middle domain YP_0265 IPR005474 Transketolase, N-terminal YP_0265 IPR004660 Pyruvate dehydrogenase E1 component YP_0265 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal YP_0266 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YP_0266 IPR036625 E3-binding domain superfamily YP_0266 IPR011053 Single hybrid motif YP_0266 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain YP_0266 IPR000089 Biotin/lipoyl attachment YP_0266 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YP_0266 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex YP_0266 IPR004167 Peripheral subunit-binding domain YP_0268 IPR023753 FAD/NAD(P)-binding domain YP_0268 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0268 IPR006258 Dihydrolipoamide dehydrogenase YP_0268 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YP_0268 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YP_0268 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YP_0268 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_0269 IPR002686 Transposase IS200-like YP_0269 IPR036515 Transposase IS200-like superfamily YP_0270 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YP_0270 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain YP_0270 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YP_0270 IPR015929 Aconitase B, swivel YP_0270 IPR036008 Aconitase, iron-sulfur domain YP_0270 IPR004406 Aconitase B YP_0270 IPR015933 Aconitase B, HEAT-like domain YP_0270 IPR036288 Aconitase B, HEAT-like domain superfamily YP_0270 IPR018136 Aconitase family, 4Fe-4S cluster binding site YP_0270 IPR015932 Aconitase, domain 2 YP_0271 IPR008249 Uncharacterised protein family UPF0231 YP_0272 IPR000620 EamA domain YP_0273 IPR016067 S-adenosylmethionine decarboxylase, core YP_0273 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic YP_0273 IPR009165 S-adenosylmethionine decarboxylase, bacterial YP_0274 IPR030373 Polyamine biosynthesis domain, conserved site YP_0274 IPR037163 Spermidine synthase, tetramerisation domain superfamily YP_0274 IPR035246 Spermidine synthase, tetramerisation domain YP_0274 IPR001045 Spermidine/spermine synthases YP_0274 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0274 IPR030374 Polyamine biosynthesis domain YP_0275 IPR038432 PulS/OutS-like superfamily YP_0275 IPR019114 Chaperone lipoprotein, PulS/OutS-like YP_0276 IPR011707 Multicopper oxidase, type 3 YP_0276 IPR006311 Twin-arginine translocation pathway, signal sequence YP_0276 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YP_0276 IPR011706 Multicopper oxidase, type 2 YP_0276 IPR001117 Multicopper oxidase, type 1 YP_0276 IPR002355 Multicopper oxidase, copper-binding site YP_0276 IPR008972 Cupredoxin YP_0277 IPR005904 Hypoxanthine phosphoribosyl transferase YP_0277 IPR000836 Phosphoribosyltransferase domain YP_0277 IPR029057 Phosphoribosyltransferase-like YP_0278 IPR001765 Carbonic anhydrase YP_0278 IPR036874 Carbonic anhydrase superfamily YP_0278 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site YP_0279 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0279 IPR017871 ABC transporter, conserved site YP_0279 IPR003439 ABC transporter-like YP_0279 IPR003593 AAA+ ATPase domain YP_0280 IPR000412 ABC-2 transporter YP_0280 IPR013525 ABC-2 type transporter YP_0282 IPR009010 Aspartate decarboxylase-like domain superfamily YP_0282 IPR003190 Aspartate decarboxylase YP_0283 IPR003721 Pantoate-beta-alanine ligase YP_0283 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain YP_0283 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0284 IPR040442 Pyruvate kinase-like domain superfamily YP_0284 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YP_0284 IPR003700 Ketopantoate hydroxymethyltransferase YP_0285 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily YP_0285 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_0286 IPR025866 Polymerase A arginine-rich C-terminal domain YP_0286 IPR010206 Poly(A) polymerase I YP_0286 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain YP_0286 IPR002646 Poly A polymerase, head domain YP_0287 IPR022380 Glutamyl-Q tRNA(Asp) synthetase YP_0287 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0287 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YP_0287 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YP_0288 IPR012784 RNA polymerase-binding transcription factor DksA YP_0288 IPR037187 DksA, N-terminal domain superfamily YP_0288 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria YP_0288 IPR000962 Zinc finger, DksA/TraR C4-type YP_0288 IPR020458 Zinc finger, DksA/TraR C4-type conserved site YP_0289 IPR041465 SfsA, N-terminal OB domain YP_0289 IPR040452 Sugar fermentation stimulation protein, C-terminal YP_0289 IPR005224 Sugar fermentation stimulation protein YP_0290 IPR014051 Phosphoesterase, HXTX YP_0290 IPR004175 RNA 2',3'-cyclic phosphodiesterase YP_0290 IPR009097 Cyclic phosphodiesterase YP_0291 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal YP_0291 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0291 IPR010225 ATP-dependent helicase HrpB YP_0291 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_0291 IPR001650 Helicase, C-terminal YP_0291 IPR011545 DEAD/DEAH box helicase domain YP_0291 IPR007502 Helicase-associated domain YP_0292 IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain YP_0292 IPR001460 Penicillin-binding protein, transpeptidase YP_0292 IPR036950 Penicillin binding protein transglycosylase domain YP_0292 IPR011813 Penicillin-binding protein 1B YP_0292 IPR023346 Lysozyme-like domain superfamily YP_0292 IPR001264 Glycosyl transferase, family 51 YP_0292 IPR028166 Bifunctional transglycosylase second domain YP_0292 IPR012338 Beta-lactamase/transpeptidase-like YP_0293 IPR003439 ABC transporter-like YP_0293 IPR003593 AAA+ ATPase domain YP_0293 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0293 IPR017871 ABC transporter, conserved site YP_0294 IPR002491 ABC transporter periplasmic binding domain YP_0295 IPR000522 ABC transporter, permease protein, BtuC-like YP_0295 IPR037294 ABC transporter, BtuC-like YP_0296 IPR015424 Pyridoxal phosphate-dependent transferase YP_0296 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase YP_0296 IPR005814 Aminotransferase class-III YP_0296 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_0296 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_0297 IPR023861 Chloride channel, ClcA YP_0297 IPR014743 Chloride channel, core YP_0297 IPR001807 Chloride channel, voltage gated YP_0298 IPR023063 FeS cluster insertion protein ErpA YP_0298 IPR035903 HesB-like domain superfamily YP_0298 IPR000361 FeS cluster biogenesis YP_0298 IPR017870 FeS cluster insertion, C-terminal, conserved site YP_0298 IPR016092 FeS cluster insertion protein YP_0299 IPR005115 Uncharacterised domain UPF0126 YP_0300 IPR002491 ABC transporter periplasmic binding domain YP_0300 IPR023544 ABC transporter, vitamin B12-binding protein YP_0301 IPR035994 Nucleoside phosphorylase superfamily YP_0301 IPR000845 Nucleoside phosphorylase domain YP_0301 IPR010049 MTA/SAH nucleosidase YP_0302 IPR020779 dNTP triphosphohydrolase, type 1 YP_0302 IPR003607 HD/PDEase domain YP_0302 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily YP_0302 IPR006674 HD domain YP_0302 IPR006261 dNTP triphosphohydrolase YP_0302 IPR026875 Phosphohydrolase-associated domain YP_0303 IPR001478 PDZ domain YP_0303 IPR036034 PDZ superfamily YP_0303 IPR011782 Peptidase S1C, Do YP_0303 IPR001940 Peptidase S1C YP_0303 IPR009003 Peptidase S1, PA clan YP_0304 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_0304 IPR036641 HPT domain superfamily YP_0304 IPR005467 Histidine kinase domain YP_0304 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_0304 IPR001789 Signal transduction response regulator, receiver domain YP_0304 IPR011006 CheY-like superfamily YP_0304 IPR003660 HAMP domain YP_0304 IPR003594 Histidine kinase/HSP90-like ATPase YP_0304 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0304 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_0304 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YP_0304 IPR019247 Histidine kinase BarA, N-terminal YP_0306 IPR004811 RelA/SpoT family YP_0306 IPR012675 Beta-grasp domain superfamily YP_0306 IPR002912 ACT domain YP_0306 IPR007685 RelA/SpoT YP_0306 IPR003607 HD/PDEase domain YP_0306 IPR033655 RelA, TGS domain YP_0306 IPR012676 TGS-like YP_0306 IPR004095 TGS YP_0308 IPR011551 NTP pyrophosphohydrolase MazG YP_0308 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core YP_0309 IPR004468 CTP synthase YP_0309 IPR017456 CTP synthase, N-terminal YP_0309 IPR017926 Glutamine amidotransferase YP_0309 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0309 IPR033828 CTP synthase GATase domain YP_0309 IPR029062 Class I glutamine amidotransferase-like YP_0310 IPR020809 Enolase, conserved site YP_0310 IPR020811 Enolase, N-terminal YP_0310 IPR029017 Enolase-like, N-terminal YP_0310 IPR036849 Enolase-like, C-terminal domain superfamily YP_0310 IPR020810 Enolase, C-terminal TIM barrel domain YP_0310 IPR000941 Enolase YP_0311 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone YP_0311 IPR018152 Superoxide dismutase, copper/zinc, binding site YP_0311 IPR001424 Superoxide dismutase, copper/zinc binding domain YP_0311 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily YP_0312 IPR013785 Aldolase-type TIM barrel YP_0312 IPR024924 7-carboxy-7-deazaguanine synthase-like YP_0312 IPR007197 Radical SAM YP_0312 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria YP_0313 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family YP_0313 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily YP_0314 IPR017927 FAD-binding domain, ferredoxin reductase-type YP_0314 IPR029039 Flavoprotein-like superfamily YP_0314 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding YP_0314 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily YP_0314 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_0314 IPR001433 Oxidoreductase FAD/NAD(P)-binding YP_0314 IPR017938 Riboflavin synthase-like beta-barrel YP_0314 IPR001094 Flavodoxin-like YP_0314 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria YP_0314 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YP_0314 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain YP_0314 IPR008254 Flavodoxin/nitric oxide synthase YP_0315 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain YP_0315 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain YP_0315 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily YP_0315 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit YP_0315 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site YP_0321 IPR002500 Phosphoadenosine phosphosulphate reductase YP_0321 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0321 IPR011784 Sulphate adenylyltransferase, small subunit YP_0322 IPR041757 Sulfate adenylyltransferase subunit CysN, GTP-binding domain YP_0322 IPR000795 Transcription factor, GTP-binding domain YP_0322 IPR009000 Translation protein, beta-barrel domain superfamily YP_0322 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YP_0322 IPR011779 Sulphate adenylyltransferase, large subunit YP_0322 IPR031157 Tr-type G domain, conserved site YP_0322 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0322 IPR005225 Small GTP-binding protein domain YP_0323 IPR002891 Adenylyl-sulfate kinase YP_0323 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0324 IPR022721 Protein of unknown function DUF3561 YP_0325 IPR023081 Cell division protein FtsB YP_0325 IPR007060 Septum formation initiator FtsL/DivIC YP_0326 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site YP_0326 IPR029044 Nucleotide-diphospho-sugar transferases YP_0326 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_0326 IPR034683 Cytidylyltransferase IspD/TarI YP_0327 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site YP_0327 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily YP_0327 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_0328 IPR020119 Pseudouridine synthase TruD, conserved site YP_0328 IPR001656 Pseudouridine synthase, TruD YP_0328 IPR020103 Pseudouridine synthase, catalytic domain superfamily YP_0328 IPR042214 Pseudouridine synthase, TruD, catalytic domain YP_0328 IPR011760 Pseudouridine synthase, TruD, insertion domain YP_0329 IPR036523 SurE-like phosphatase/nucleotidase superfamily YP_0329 IPR030048 Survival protein SurE YP_0329 IPR002828 Survival protein SurE-like phosphatase/nucleotidase YP_0330 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_0330 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0331 IPR018392 LysM domain YP_0331 IPR036779 LysM domain superfamily YP_0331 IPR011055 Duplicated hybrid motif YP_0331 IPR016047 Peptidase M23 YP_0332 IPR007627 RNA polymerase sigma-70 region 2 YP_0332 IPR000943 RNA polymerase sigma-70 YP_0332 IPR009042 RNA polymerase sigma-70 region 1.2 YP_0332 IPR007624 RNA polymerase sigma-70 region 3 YP_0332 IPR007630 RNA polymerase sigma-70 region 4 YP_0332 IPR013325 RNA polymerase sigma factor, region 2 YP_0332 IPR012761 RNA polymerase sigma factor RpoS YP_0332 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0332 IPR014284 RNA polymerase sigma-70 like domain YP_0332 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_0333 IPR005748 DNA mismatch repair protein MutS YP_0333 IPR007695 DNA mismatch repair protein MutS-like, N-terminal YP_0333 IPR017261 DNA mismatch repair protein MutS/MSH YP_0333 IPR000432 DNA mismatch repair protein MutS, C-terminal YP_0333 IPR036187 DNA mismatch repair protein MutS, core domain superfamily YP_0333 IPR016151 DNA mismatch repair protein MutS, N-terminal YP_0333 IPR007696 DNA mismatch repair protein MutS, core YP_0333 IPR007861 DNA mismatch repair protein MutS, clamp YP_0333 IPR007860 DNA mismatch repair protein MutS, connector domain YP_0333 IPR036678 MutS, connector domain superfamily YP_0333 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0334 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily YP_0334 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family YP_0334 IPR004785 Ribose 5-phosphate isomerase B YP_0335 IPR011032 GroES-like superfamily YP_0335 IPR013154 Alcohol dehydrogenase, N-terminal YP_0335 IPR013149 Alcohol dehydrogenase, C-terminal YP_0335 IPR036291 NAD(P)-binding domain superfamily YP_0335 IPR020843 Polyketide synthase, enoylreductase domain YP_0336 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0336 IPR020904 Short-chain dehydrogenase/reductase, conserved site YP_0336 IPR036291 NAD(P)-binding domain superfamily YP_0337 IPR004006 DhaK domain YP_0338 IPR012737 Dihydroxyacetone kinase, subunit L YP_0338 IPR004007 DhaL domain YP_0338 IPR036117 DhaL domain superfamily YP_0339 IPR009057 Homeobox-like domain superfamily YP_0339 IPR025246 Transposase IS30-like HTH domain YP_0339 IPR037171 NagB/RpiA transferase-like YP_0339 IPR007324 Sugar-binding domain, putative YP_0339 IPR011991 ArsR-like helix-turn-helix domain YP_0340 IPR000802 Arsenical pump membrane protein, ArsB YP_0341 IPR011991 ArsR-like helix-turn-helix domain YP_0341 IPR018334 ArsR-type transcription regulator, HTH motif YP_0341 IPR001845 HTH ArsR-type DNA-binding domain YP_0341 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0341 IPR036390 Winged helix DNA-binding domain superfamily YP_0344 IPR018313 Solute-binding protein family 3, conserved site YP_0344 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YP_0344 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_0345 IPR025992 Haem-binding domain YP_0345 IPR004852 Di-haem cytochrome c peroxidase YP_0345 IPR036909 Cytochrome c-like domain superfamily YP_0345 IPR009056 Cytochrome c-like domain YP_0347 IPR037066 TonB-dependent receptor, plug domain superfamily YP_0347 IPR012910 TonB-dependent receptor, plug domain YP_0347 IPR039426 Vitamin B12 transporter BtuB-like YP_0347 IPR000531 TonB-dependent receptor-like, beta-barrel YP_0347 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_0347 IPR010917 TonB-dependent receptor, conserved site YP_0347 IPR010916 TonB box, conserved site YP_0350 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 YP_0350 IPR001714 Peptidase M24, methionine aminopeptidase YP_0350 IPR036005 Creatinase/aminopeptidase-like YP_0350 IPR000994 Peptidase M24 YP_0352 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain YP_0352 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily YP_0352 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain YP_0352 IPR020557 Fumarate lyase, conserved site YP_0352 IPR011167 Iron-dependent fumarate hydratase YP_0353 IPR018485 Carbohydrate kinase, FGGY, C-terminal YP_0353 IPR018483 Carbohydrate kinase, FGGY, conserved site YP_0353 IPR018484 Carbohydrate kinase, FGGY, N-terminal YP_0353 IPR000577 Carbohydrate kinase, FGGY YP_0354 IPR013022 Xylose isomerase-like, TIM barrel domain YP_0354 IPR001719 AP endonuclease 2 YP_0354 IPR004560 L-ribulose-5-phosphate 3-epimerase YP_0354 IPR036237 Xylose isomerase-like superfamily YP_0355 IPR001851 ABC transporter, permease YP_0356 IPR001851 ABC transporter, permease YP_0357 IPR017871 ABC transporter, conserved site YP_0357 IPR003439 ABC transporter-like YP_0357 IPR015861 ABC transporter, ribose import, RbsA YP_0357 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0357 IPR003593 AAA+ ATPase domain YP_0359 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0359 IPR036390 Winged helix DNA-binding domain superfamily YP_0359 IPR014036 DeoR C-terminal sensor domain YP_0359 IPR001034 DeoR-type HTH domain YP_0359 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YP_0359 IPR037171 NagB/RpiA transferase-like YP_0360 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YP_0360 IPR001303 Class II aldolase/adducin N-terminal YP_0360 IPR004661 L-ribulose-5-phosphate 4-epimerase YP_0360 IPR033748 L-ribulose-5-phosphate 4-epimerase AraD YP_0361 IPR006656 Molybdopterin oxidoreductase YP_0361 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YP_0361 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YP_0361 IPR006311 Twin-arginine translocation pathway, signal sequence YP_0361 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YP_0361 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE YP_0361 IPR009010 Aspartate decarboxylase-like domain superfamily YP_0361 IPR006657 Molybdopterin dinucleotide-binding domain YP_0361 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YP_0362 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_0362 IPR014297 Dimethylsulphoxide reductase, chain B YP_0362 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_0363 IPR007059 DMSO reductase anchor subunit (DmsC) YP_0364 IPR020945 DMSO/Nitrate reductase chaperone YP_0364 IPR026269 Tat proofreading chaperone DmsD-type YP_0364 IPR036411 TorD-like superfamily YP_0364 IPR028611 Tat proofreading chaperone DmsD YP_0365 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YP_0365 IPR016174 Di-haem cytochrome, transmembrane YP_0366 IPR010980 Cytochrome c/b562 YP_0366 IPR009155 Cytochrome b562 YP_0367 IPR002016 Haem peroxidase YP_0367 IPR019793 Peroxidases heam-ligand binding site YP_0367 IPR019794 Peroxidase, active site YP_0367 IPR000763 Catalase-peroxidase haem YP_0367 IPR010255 Haem peroxidase superfamily YP_0370 IPR003593 AAA+ ATPase domain YP_0370 IPR015861 ABC transporter, ribose import, RbsA YP_0370 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0370 IPR017871 ABC transporter, conserved site YP_0370 IPR003439 ABC transporter-like YP_0371 IPR001851 ABC transporter, permease YP_0372 IPR005474 Transketolase, N-terminal YP_0372 IPR029061 Thiamin diphosphate-binding fold YP_0373 IPR005475 Transketolase-like, pyrimidine-binding domain YP_0373 IPR029061 Thiamin diphosphate-binding fold YP_0373 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YP_0373 IPR033248 Transketolase, C-terminal domain YP_0374 IPR018485 Carbohydrate kinase, FGGY, C-terminal YP_0374 IPR000577 Carbohydrate kinase, FGGY YP_0374 IPR018484 Carbohydrate kinase, FGGY, N-terminal YP_0374 IPR042016 Apulose kinase YP_0377 IPR011701 Major facilitator superfamily YP_0377 IPR023745 MSF-type transporter, YcaD YP_0377 IPR036259 MFS transporter superfamily YP_0377 IPR020846 Major facilitator superfamily domain YP_0378 IPR008136 CinA, C-terminal YP_0378 IPR036653 CinA-like, C-terminal YP_0379 IPR003593 AAA+ ATPase domain YP_0379 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain YP_0379 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0379 IPR020584 DNA recombination/repair protein RecA, conserved site YP_0379 IPR013765 DNA recombination and repair protein RecA YP_0379 IPR023400 DNA recombination and repair protein RecA, C-terminal YP_0379 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface YP_0380 IPR003783 Regulatory protein RecX YP_0380 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0381 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain YP_0381 IPR002318 Alanine-tRNA ligase, class IIc YP_0381 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal YP_0381 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria YP_0381 IPR003156 DHHA1 domain YP_0381 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily YP_0381 IPR009000 Translation protein, beta-barrel domain superfamily YP_0381 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily YP_0381 IPR012947 Threonyl/alanyl tRNA synthetase, SAD YP_0382 IPR036107 Carbon storage regulator superfamily YP_0382 IPR003751 Translational regulator CsrA YP_0383 IPR023214 HAD superfamily YP_0383 IPR041492 Haloacid dehalogenase-like hydrolase YP_0383 IPR006439 HAD hydrolase, subfamily IA YP_0383 IPR036412 HAD-like superfamily YP_0383 IPR010976 Beta-phosphoglucomutase hydrolase YP_0383 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YP_0384 IPR032816 SNARE associated Golgi protein YP_0385 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YP_0385 IPR007370 Glutamate--cysteine ligase YP_0385 IPR006334 Glutamate--cysteine ligase, monofunctional YP_0386 IPR003815 S-ribosylhomocysteinase (LuxS) YP_0386 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily YP_0386 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YP_0387 IPR002550 CNNM, transmembrane domain YP_0387 IPR016169 FAD-binding, type PCMH, subdomain 2 YP_0387 IPR000644 CBS domain YP_0387 IPR005170 Transporter-associated domain YP_0387 IPR036318 FAD-binding, type PCMH-like superfamily YP_0388 IPR002541 Cytochrome c assembly protein YP_0389 IPR013822 Signal recognition particle SRP54, helical bundle YP_0389 IPR004125 Signal recognition particle, SRP54 subunit, M-domain YP_0389 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily YP_0389 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0389 IPR003593 AAA+ ATPase domain YP_0389 IPR004780 Signal recognition particle protein YP_0389 IPR022941 Signal recognition particle, SRP54 subunit YP_0389 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily YP_0389 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YP_0391 IPR000307 Ribosomal protein S16 YP_0391 IPR020592 Ribosomal protein S16, conserved site YP_0391 IPR023803 Ribosomal protein S16 domain superfamily YP_0392 IPR011961 16S rRNA processing protein RimM YP_0392 IPR027275 PRC-barrel domain YP_0392 IPR011033 PRC-barrel-like superfamily YP_0392 IPR002676 RimM, N-terminal YP_0392 IPR036976 RimM, N-terminal domain superfamily YP_0392 IPR009000 Translation protein, beta-barrel domain superfamily YP_0393 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria YP_0393 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal YP_0393 IPR029028 Alpha/beta knot methyltransferases YP_0393 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain YP_0393 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YP_0394 IPR001857 Ribosomal protein L19 YP_0394 IPR018257 Ribosomal protein L19, conserved site YP_0394 IPR008991 Translation protein SH3-like domain superfamily YP_0394 IPR038657 Ribosomal protein L19 superfamily YP_0395 IPR007433 Protein of unknown function DUF481 YP_0397 IPR007492 LytTR DNA-binding domain YP_0397 IPR001789 Signal transduction response regulator, receiver domain YP_0397 IPR011006 CheY-like superfamily YP_0398 IPR013785 Aldolase-type TIM barrel YP_0398 IPR006218 DAHP synthetase I/KDSA YP_0398 IPR006219 DHAP synthase, class 1 YP_0399 IPR036263 Chorismate mutase type II superfamily YP_0399 IPR036979 Chorismate mutase domain superfamily YP_0399 IPR002701 Chorismate mutase II, prokaryotic-type YP_0399 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YP_0399 IPR011277 Chorismate mutase, T-protein YP_0399 IPR036291 NAD(P)-binding domain superfamily YP_0399 IPR003099 Prephenate dehydrogenase YP_0399 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein YP_0400 IPR018528 Prephenate dehydratase, conserved site YP_0400 IPR002912 ACT domain YP_0400 IPR036979 Chorismate mutase domain superfamily YP_0400 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase YP_0400 IPR036263 Chorismate mutase type II superfamily YP_0400 IPR002701 Chorismate mutase II, prokaryotic-type YP_0400 IPR010952 Chorismate mutase, gammaproteobacteria YP_0400 IPR001086 Prephenate dehydratase YP_0401 IPR002611 IstB-like ATP-binding protein YP_0401 IPR003593 AAA+ ATPase domain YP_0401 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0401 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0401 IPR001270 ClpA/B family YP_0402 IPR012337 Ribonuclease H-like superfamily YP_0402 IPR006120 Resolvase, HTH domain YP_0402 IPR001584 Integrase, catalytic core YP_0402 IPR017894 HTH domain, IS21 transposase-type YP_0402 IPR036397 Ribonuclease H superfamily YP_0404 IPR014083 Cation/acetate symporter ActP YP_0404 IPR038377 Sodium/glucose symporter superfamily YP_0404 IPR001734 Sodium/solute symporter YP_0404 IPR018212 Sodium/solute symporter, conserved site YP_0405 IPR007436 Protein of unknown function DUF485 YP_0406 IPR011904 Acetate-CoA ligase YP_0406 IPR000873 AMP-dependent synthetase/ligase YP_0406 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain YP_0406 IPR025110 AMP-binding enzyme, C-terminal domain YP_0406 IPR042099 AMP-dependent synthetase-like superfamily YP_0406 IPR020845 AMP-binding, conserved site YP_0407 IPR036458 Sodium:dicarboxylate symporter superfamily YP_0407 IPR018107 Sodium:dicarboxylate symporter, conserved site YP_0407 IPR001991 Sodium:dicarboxylate symporter YP_0407 IPR033380 Glutamate-aspartate symport protein GltP/GltT YP_0407 IPR034703 Proton/glutamate-aspartate symporter GltP YP_0408 IPR001789 Signal transduction response regulator, receiver domain YP_0408 IPR016032 Signal transduction response regulator, C-terminal effector YP_0408 IPR011006 CheY-like superfamily YP_0408 IPR000792 Transcription regulator LuxR, C-terminal YP_0409 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_0409 IPR005467 Histidine kinase domain YP_0409 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0409 IPR003594 Histidine kinase/HSP90-like ATPase YP_0409 IPR001789 Signal transduction response regulator, receiver domain YP_0409 IPR011006 CheY-like superfamily YP_0409 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_0409 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_0409 IPR003660 HAMP domain YP_0409 IPR019247 Histidine kinase BarA, N-terminal YP_0409 IPR036641 HPT domain superfamily YP_0409 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YP_0413 IPR018062 HTH domain AraC-type, conserved site YP_0413 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like YP_0413 IPR009057 Homeobox-like domain superfamily YP_0413 IPR018060 DNA binding HTH domain, AraC-type YP_0417 IPR006182 Secretory protein YscJ/FliF YP_0417 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ YP_0420 IPR042193 FHIPEP, domain 3 YP_0420 IPR042196 FHIPEP, domain 4 YP_0420 IPR025505 FHIPEP conserved site YP_0420 IPR001712 Type III secretion system FHIPEP YP_0420 IPR006302 Type III secretion protein HrcV YP_0421 IPR013380 ATPase, type III secretion system, H+-transporting YP_0421 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0421 IPR003593 AAA+ ATPase domain YP_0421 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YP_0421 IPR005714 ATPase, type III secretion system, FliI/YscN YP_0421 IPR040627 T3SS EscN ATPase, C-terminal YP_0424 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO YP_0424 IPR036429 SpoA-like superfamily YP_0424 IPR001543 Surface presentation of antigen (SpoA) YP_0424 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YP_0425 IPR005838 Type III secretion system inner membrane P protein YP_0425 IPR005773 Yop virulence translocation protein R YP_0426 IPR006306 Type III secretion protein HrpO YP_0426 IPR002191 Bacterial export protein family 3 YP_0427 IPR006304 Type III secretion protein SpaR/YscT YP_0427 IPR002010 Type III secretion system inner membrane R protein YP_0428 IPR006307 Type III exporter system, secretion apparatus protein BsaZ YP_0428 IPR006135 Type III secretion system substrate exporter YP_0428 IPR029025 Type III secretion system substrate exporter, C-terminal YP_0429 IPR007272 Sulphur transport domain YP_0430 IPR001455 TusA-like domain YP_0430 IPR036868 TusA-like domain superfamily YP_0431 IPR005119 LysR, substrate-binding YP_0431 IPR000847 Transcription regulator HTH, LysR YP_0431 IPR036390 Winged helix DNA-binding domain superfamily YP_0431 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0432 IPR018227 Amino acid/polyamine transporter 2 YP_0433 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_0433 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_0433 IPR015424 Pyridoxal phosphate-dependent transferase YP_0433 IPR006233 Cystathionine beta-lyase, bacterial YP_0433 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_0434 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0434 IPR003593 AAA+ ATPase domain YP_0434 IPR003439 ABC transporter-like YP_0434 IPR017871 ABC transporter, conserved site YP_0434 IPR015863 ABC transporter, hemin import, HmuV YP_0435 IPR037294 ABC transporter, BtuC-like YP_0435 IPR000522 ABC transporter, permease protein, BtuC-like YP_0436 IPR002491 ABC transporter periplasmic binding domain YP_0437 IPR007845 Haemin-degrading HemS/ChuX domain YP_0438 IPR037066 TonB-dependent receptor, plug domain superfamily YP_0438 IPR010916 TonB box, conserved site YP_0438 IPR000531 TonB-dependent receptor-like, beta-barrel YP_0438 IPR011276 TonB-dependent haem/haemoglobin receptor YP_0438 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor YP_0438 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_0438 IPR012910 TonB-dependent receptor, plug domain YP_0438 IPR039426 Vitamin B12 transporter BtuB-like YP_0439 IPR019600 Hemin uptake protein HemP YP_0440 IPR016040 NAD(P)-binding domain YP_0440 IPR036291 NAD(P)-binding domain superfamily YP_0441 IPR010413 Intracellular heme transport protein HutX-like YP_0443 IPR001270 ClpA/B family YP_0443 IPR003593 AAA+ ATPase domain YP_0443 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0443 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0443 IPR002611 IstB-like ATP-binding protein YP_0444 IPR036397 Ribonuclease H superfamily YP_0444 IPR017894 HTH domain, IS21 transposase-type YP_0444 IPR001584 Integrase, catalytic core YP_0444 IPR006120 Resolvase, HTH domain YP_0444 IPR012337 Ribonuclease H-like superfamily YP_0446 IPR011233 Tellurite/Phi/PacB toxicity protection, TerW YP_0448 IPR028157 PELOTA RNA-binding domain YP_0448 IPR011215 Phosphoribosyl transferase YP_0452 IPR003325 TerD domain YP_0453 IPR017115 Tellurite resistance, TerA YP_0453 IPR003325 TerD domain YP_0454 IPR007791 Co-chaperone DjlA, N-terminal YP_0454 IPR029024 TerB-like YP_0455 IPR022369 Integral membrane protein TerC, riboswitch-linked YP_0455 IPR005496 Integral membrane protein TerC YP_0456 IPR003325 TerD domain YP_0457 IPR003325 TerD domain YP_0459 IPR037224 PapC, N-terminal domain superfamily YP_0459 IPR025885 PapC, N-terminal domain YP_0459 IPR000015 Outer membrane usher protein YP_0459 IPR042186 Outer membrane usher protein FimD, plug domain YP_0459 IPR025949 PapC-like, C-terminal domain YP_0460 IPR016147 Pili assembly chaperone, N-terminal YP_0460 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_0460 IPR008962 PapD-like superfamily YP_0460 IPR013783 Immunoglobulin-like fold YP_0464 IPR012951 Berberine/berberine-like YP_0464 IPR016166 FAD-binding domain, PCMH-type YP_0464 IPR036318 FAD-binding, type PCMH-like superfamily YP_0464 IPR006311 Twin-arginine translocation pathway, signal sequence YP_0464 IPR006094 FAD linked oxidase, N-terminal YP_0465 IPR006315 Outer membrane autotransporter barrel YP_0465 IPR013425 Autotransporter-associated beta strand repeat YP_0465 IPR011050 Pectin lyase fold/virulence factor YP_0465 IPR036709 Autotransporter beta-domain superfamily YP_0465 IPR012332 P22 tailspike-like, C-terminal domain superfamily YP_0465 IPR005546 Autotransporter beta-domain YP_0466 IPR007440 Chorismate--pyruvate lyase YP_0466 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YP_0467 IPR000537 UbiA prenyltransferase family YP_0467 IPR030470 UbiA prenyltransferase conserved site YP_0467 IPR039653 Prenyltransferase YP_0467 IPR006370 4-hydroxybenzoate polyprenyltransferase-like YP_0468 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase YP_0468 IPR041728 GPAT/DHAPAT, acyltransferase domain YP_0468 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB YP_0468 IPR002123 Phospholipid/glycerol acyltransferase YP_0469 IPR036945 Diacylglycerol kinase (DAGK) superfamily YP_0469 IPR033718 Diacylglycerol kinase, prokaryotic YP_0469 IPR000829 DAGK family YP_0470 IPR006200 Transcription regulator LexA YP_0470 IPR039418 LexA-like YP_0470 IPR006197 Peptidase S24, LexA-like YP_0470 IPR015927 Peptidase S24/S26A/S26B/S26C YP_0470 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0470 IPR036390 Winged helix DNA-binding domain superfamily YP_0470 IPR006199 LexA repressor, DNA-binding domain YP_0470 IPR036286 LexA/Signal peptidase-like superfamily YP_0471 IPR036390 Winged helix DNA-binding domain superfamily YP_0471 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0471 IPR002481 Ferric-uptake regulator YP_0472 IPR018517 tRNA-dihydrouridine synthase, conserved site YP_0472 IPR001269 tRNA-dihydrouridine synthase YP_0472 IPR004653 tRNA-dihydrouridine(20/20a) synthase YP_0472 IPR035587 DUS-like, FMN-binding domain YP_0472 IPR013785 Aldolase-type TIM barrel YP_0473 IPR014318 Phage shock protein, PspG YP_0474 IPR020843 Polyketide synthase, enoylreductase domain YP_0474 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site YP_0474 IPR036291 NAD(P)-binding domain superfamily YP_0474 IPR011032 GroES-like superfamily YP_0474 IPR013149 Alcohol dehydrogenase, C-terminal YP_0474 IPR013154 Alcohol dehydrogenase, N-terminal YP_0475 IPR007694 DNA helicase, DnaB-like, C-terminal YP_0475 IPR007693 DNA helicase, DnaB-like, N-terminal YP_0475 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YP_0475 IPR003593 AAA+ ATPase domain YP_0475 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0475 IPR007692 DNA helicase, DnaB type YP_0475 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily YP_0476 IPR001608 Alanine racemase, N-terminal YP_0476 IPR011079 Alanine racemase, C-terminal YP_0476 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YP_0476 IPR000821 Alanine racemase YP_0476 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site YP_0476 IPR029066 PLP-binding barrel YP_0477 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YP_0477 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_0477 IPR015424 Pyridoxal phosphate-dependent transferase YP_0477 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_0477 IPR004839 Aminotransferase, class I/classII YP_0477 IPR000796 Aspartate/other aminotransferase YP_0478 IPR038056 YjbR-like superfamily YP_0478 IPR007351 Uncharacterised protein YjbR YP_0479 IPR004602 UvrABC system subunit A YP_0479 IPR041552 UvrA DNA-binding domain YP_0479 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0479 IPR017871 ABC transporter, conserved site YP_0479 IPR041102 UvrA, interaction domain YP_0479 IPR003439 ABC transporter-like YP_0480 IPR012340 Nucleic acid-binding, OB-fold YP_0480 IPR000424 Primosome PriB/single-strand DNA-binding YP_0480 IPR011344 Single-stranded DNA-binding protein YP_0481 IPR013448 L-rhamnose mutarotase YP_0481 IPR008000 Rhamnose/fucose mutarotase YP_0481 IPR011008 Dimeric alpha-beta barrel YP_0482 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YP_0482 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YP_0482 IPR039697 Iron-type alcohol dehydrogenase-like YP_0483 IPR001303 Class II aldolase/adducin N-terminal YP_0483 IPR013447 Rhamnulose-1-phosphate aldolase YP_0483 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YP_0484 IPR036237 Xylose isomerase-like superfamily YP_0484 IPR009308 Rhamnose isomerase YP_0485 IPR013449 Rhamnulokinase YP_0485 IPR018484 Carbohydrate kinase, FGGY, N-terminal YP_0485 IPR018485 Carbohydrate kinase, FGGY, C-terminal YP_0485 IPR000577 Carbohydrate kinase, FGGY YP_0487 IPR003313 AraC-type arabinose-binding/dimerisation domain YP_0487 IPR009057 Homeobox-like domain superfamily YP_0487 IPR037923 Transcription regulator HTH-like YP_0487 IPR018060 DNA binding HTH domain, AraC-type YP_0487 IPR018062 HTH domain AraC-type, conserved site YP_0487 IPR020449 Transcription regulator HTH, AraC- type YP_0487 IPR023609 Transcription regulator HTH, RhaS YP_0487 IPR014710 RmlC-like jelly roll fold YP_0488 IPR018062 HTH domain AraC-type, conserved site YP_0488 IPR011051 RmlC-like cupin domain superfamily YP_0488 IPR009057 Homeobox-like domain superfamily YP_0488 IPR014710 RmlC-like jelly roll fold YP_0488 IPR018060 DNA binding HTH domain, AraC-type YP_0488 IPR003313 AraC-type arabinose-binding/dimerisation domain YP_0488 IPR020449 Transcription regulator HTH, AraC- type YP_0488 IPR023699 Transcription activator HTH, RhaR YP_0489 IPR004673 L-rhamnose-proton symport, RhaT YP_0491 IPR008992 Enterotoxin YP_0494 IPR009057 Homeobox-like domain superfamily YP_0494 IPR001647 DNA-binding HTH domain, TetR-type YP_0494 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YP_0496 IPR023753 FAD/NAD(P)-binding domain YP_0496 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0496 IPR028261 Dihydroprymidine dehydrogenase domain II YP_0496 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_0496 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_0496 IPR009051 Alpha-helical ferredoxin YP_0496 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 YP_0497 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_0497 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_0498 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YP_0498 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YP_0498 IPR006656 Molybdopterin oxidoreductase YP_0498 IPR006478 Formate dehydrogenase, alpha subunit YP_0498 IPR041924 Formate dehydrogenase H, N-terminal YP_0498 IPR041925 Formate dehydrogenase H, molybdopterin-binding domain YP_0498 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YP_0498 IPR006657 Molybdopterin dinucleotide-binding domain YP_0498 IPR009010 Aspartate decarboxylase-like domain superfamily YP_0499 IPR017937 Thioredoxin, conserved site YP_0499 IPR003834 Cytochrome C biogenesis protein, transmembrane domain YP_0499 IPR036249 Thioredoxin-like superfamily YP_0499 IPR022910 Thiol:disulphide interchange protein DsbD YP_0499 IPR035671 DsbD gamma YP_0499 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain YP_0499 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily YP_0499 IPR013766 Thioredoxin domain YP_0500 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YP_0500 IPR011322 Nitrogen regulatory PII-like, alpha/beta YP_0500 IPR023700 Divalent cation tolerance protein CutA, Enterobacteria YP_0500 IPR004323 Divalent ion tolerance protein, CutA YP_0501 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YP_0502 IPR022761 Fumarate lyase, N-terminal YP_0502 IPR020557 Fumarate lyase, conserved site YP_0502 IPR004708 Aspartate ammonia-lyase YP_0502 IPR024083 Fumarase/histidase, N-terminal YP_0502 IPR008948 L-Aspartase-like YP_0502 IPR018951 Fumarase C, C-terminal YP_0502 IPR000362 Fumarate lyase family YP_0504 IPR007313 FxsA cytoplasmic membrane protein YP_0505 IPR020818 GroES chaperonin family YP_0505 IPR011032 GroES-like superfamily YP_0505 IPR018369 Chaperonin GroES, conserved site YP_0505 IPR037124 GroES chaperonin superfamily YP_0506 IPR027410 TCP-1-like chaperonin intermediate domain superfamily YP_0506 IPR027413 GroEL-like equatorial domain superfamily YP_0506 IPR018370 Chaperonin Cpn60, conserved site YP_0506 IPR027409 GroEL-like apical domain superfamily YP_0506 IPR002423 Chaperonin Cpn60/TCP-1 family YP_0506 IPR001844 Chaperonin Cpn60 YP_0508 IPR025294 Protein of unknown function DUF4156 YP_0509 IPR013785 Aldolase-type TIM barrel YP_0509 IPR007197 Radical SAM YP_0509 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase YP_0509 IPR022462 Lysine-2,3-aminomutase-like YP_0510 IPR012340 Nucleic acid-binding, OB-fold YP_0510 IPR014722 Ribosomal protein L2, domain 2 YP_0510 IPR008991 Translation protein SH3-like domain superfamily YP_0510 IPR015365 Elongation factor P, C-terminal YP_0510 IPR020599 Translation elongation factor P/YeiP YP_0510 IPR013185 Translation elongation factor, KOW-like YP_0510 IPR001059 Translation elongation factor P/YeiP, central YP_0510 IPR011768 Translation elongation factor P YP_0510 IPR013852 Translation elongation factor P/YeiP, conserved site YP_0511 IPR000390 Small multidrug resistance protein family YP_0512 IPR003418 Fumarate reductase, subunit D YP_0512 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YP_0513 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YP_0513 IPR003510 Fumarate reductase, subunit C YP_0514 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YP_0514 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YP_0514 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal YP_0514 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_0514 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_0514 IPR012675 Beta-grasp domain superfamily YP_0514 IPR009051 Alpha-helical ferredoxin YP_0514 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein YP_0514 IPR036010 2Fe-2S ferredoxin-like superfamily YP_0515 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YP_0515 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YP_0515 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily YP_0515 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0515 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily YP_0515 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site YP_0515 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YP_0515 IPR005884 Fumarate reductase, flavoprotein subunit YP_0517 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal YP_0517 IPR004525 Elongation factor P--(R)-beta-lysine ligase YP_0517 IPR006195 Aminoacyl-tRNA synthetase, class II YP_0517 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YP_0518 IPR006685 Mechanosensitive ion channel MscS YP_0518 IPR024393 Mechanosensitive ion channel MscS, porin domain YP_0518 IPR010920 LSM domain superfamily YP_0518 IPR011066 Mechanosensitive ion channel MscS, C-terminal YP_0518 IPR006686 Mechanosensitive ion channel MscS, conserved site YP_0518 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YP_0518 IPR023408 Mechanosensitive ion channel MscS domain superfamily YP_0518 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YP_0519 IPR033177 Phosphatidylserine decarboxylase YP_0519 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 YP_0519 IPR003817 Phosphatidylserine decarboxylase-related YP_0520 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain YP_0520 IPR004881 Ribosome biogenesis GTPase RsgA YP_0520 IPR010914 RsgA GTPase domain YP_0520 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0521 IPR022894 Oligoribonuclease YP_0521 IPR036397 Ribonuclease H superfamily YP_0521 IPR012337 Ribonuclease H-like superfamily YP_0521 IPR013520 Exonuclease, RNase T/DNA polymerase III YP_0523 IPR004453 Epoxyqueuosine reductase QueG YP_0523 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_0523 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_0523 IPR009051 Alpha-helical ferredoxin YP_0523 IPR013542 Domain of unknown function DUF1730 YP_0524 IPR017953 Carbohydrate kinase, predicted, conserved site YP_0524 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase YP_0524 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr YP_0524 IPR029056 Ribokinase-like YP_0524 IPR004443 YjeF N-terminal domain YP_0524 IPR036652 YjeF N-terminal domain superfamily YP_0525 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE YP_0525 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0526 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain YP_0527 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_0527 IPR037198 MutL, C-terminal domain superfamily YP_0527 IPR042120 MutL, C-terminal domain, dimerisation subdomain YP_0527 IPR014790 MutL, C-terminal, dimerisation YP_0527 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms YP_0527 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0527 IPR042121 MutL, C-terminal domain, regulatory subdomain YP_0527 IPR002099 DNA mismatch repair protein family, N-terminal YP_0527 IPR020667 DNA mismatch repair protein, MutL YP_0527 IPR014762 DNA mismatch repair, conserved site YP_0527 IPR013507 DNA mismatch repair protein, S5 domain 2-like YP_0527 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0528 IPR039657 Dimethylallyltransferase YP_0528 IPR018022 IPP transferase YP_0528 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0529 IPR005001 RNA-binding protein Hfq YP_0529 IPR010920 LSM domain superfamily YP_0530 IPR032305 GTP-binding protein, middle domain YP_0530 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0530 IPR042108 GTPase HflX, N-terminal domain superfamily YP_0530 IPR006073 GTP binding domain YP_0530 IPR025121 GTPase HflX, N-terminal YP_0530 IPR016496 GTPase HflX YP_0530 IPR035647 EF-G domain III/V-like YP_0530 IPR030394 HflX-type guanine nucleotide-binding (G) domain YP_0531 IPR001972 Stomatin family YP_0531 IPR020980 Menbrane protein HflK, N-terminal YP_0531 IPR010201 HflK YP_0531 IPR001107 Band 7 domain YP_0531 IPR036013 Band 7/SPFH domain superfamily YP_0532 IPR001107 Band 7 domain YP_0532 IPR010200 HflC YP_0532 IPR036013 Band 7/SPFH domain superfamily YP_0533 IPR019201 Protein of unknown function DUF2065 YP_0534 IPR033128 Adenylosuccinate synthase, active site YP_0534 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0534 IPR001114 Adenylosuccinate synthetase YP_0534 IPR042111 Adenylosuccinate synthetase, domain 3 YP_0534 IPR042109 Adenylosuccinate synthetase, domain 1 YP_0534 IPR018220 Adenylosuccinate synthase, GTP-binding site YP_0534 IPR042110 Adenylosuccinate synthetase, domain 2 YP_0535 IPR023761 Transcriptional repressor HTH, NsrR YP_0535 IPR036390 Winged helix DNA-binding domain superfamily YP_0535 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0535 IPR000944 Transcription regulator Rrf2-type YP_0535 IPR030489 Transcription regulator Rrf2-type, conserved site YP_0536 IPR012340 Nucleic acid-binding, OB-fold YP_0536 IPR022967 RNA-binding domain, S1 YP_0536 IPR003029 S1 domain YP_0536 IPR001900 Ribonuclease II/R YP_0536 IPR004476 Ribonuclease II/ribonuclease R YP_0536 IPR011805 Ribonuclease R YP_0536 IPR013668 Ribonuclease R winged-helix domain YP_0536 IPR013223 Ribonuclease B, N-terminal OB domain YP_0536 IPR011129 Cold shock domain YP_0536 IPR040476 RNase II/RNase R, cold shock domain YP_0536 IPR022966 Ribonuclease II/R, conserved site YP_0537 IPR029064 50S ribosomal protein L30e-like YP_0537 IPR001537 tRNA/rRNA methyltransferase, SpoU type YP_0537 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB YP_0537 IPR029028 Alpha/beta knot methyltransferases YP_0537 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YP_0537 IPR013123 RNA 2-O ribose methyltransferase, substrate binding YP_0537 IPR004441 RNA methyltransferase TrmH family YP_0538 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily YP_0538 IPR041504 Adaptive response protein AidB, N-terminal YP_0538 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal YP_0538 IPR034184 Putative acyl-CoA dehydrogenase AidB YP_0538 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain YP_0538 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal YP_0538 IPR006089 Acyl-CoA dehydrogenase, conserved site YP_0540 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain YP_0540 IPR029058 Alpha/Beta hydrolase fold YP_0542 IPR000529 Ribosomal protein S6 YP_0542 IPR020815 Ribosomal protein S6, conserved site YP_0542 IPR020814 Ribosomal protein S6, plastid/chloroplast YP_0542 IPR035980 Ribosomal protein S6 superfamily YP_0542 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 YP_0543 IPR023646 Primosomal replication protein PriB YP_0543 IPR000424 Primosome PriB/single-strand DNA-binding YP_0543 IPR012340 Nucleic acid-binding, OB-fold YP_0544 IPR036870 Ribosomal protein S18 superfamily YP_0544 IPR018275 Ribosomal protein S18, conserved site YP_0544 IPR001648 Ribosomal protein S18 YP_0545 IPR020070 Ribosomal protein L9, N-terminal YP_0545 IPR036791 Ribosomal protein L9, C-terminal domain superfamily YP_0545 IPR020069 Ribosomal protein L9, C-terminal YP_0545 IPR036935 Ribosomal protein L9, N-terminal domain superfamily YP_0545 IPR009027 Ribosomal protein L9/RNase H1, N-terminal YP_0545 IPR000244 Ribosomal protein L9 YP_0545 IPR020594 Ribosomal protein L9, bacteria/chloroplast YP_0546 IPR017894 HTH domain, IS21 transposase-type YP_0546 IPR036397 Ribonuclease H superfamily YP_0546 IPR006120 Resolvase, HTH domain YP_0546 IPR012337 Ribonuclease H-like superfamily YP_0546 IPR001584 Integrase, catalytic core YP_0547 IPR001270 ClpA/B family YP_0547 IPR003593 AAA+ ATPase domain YP_0547 IPR002611 IstB-like ATP-binding protein YP_0547 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0547 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0548 IPR036515 Transposase IS200-like superfamily YP_0548 IPR002686 Transposase IS200-like YP_0550 IPR013731 Opacity-associated protein A, N-terminal YP_0550 IPR007340 Opacity-associated protein A YP_0551 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YP_0551 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YP_0551 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily YP_0552 IPR019903 Repair of iron centres family YP_0552 IPR023742 Iron-sulfur cluster repair protein YftE YP_0552 IPR012312 Haemerythrin-like YP_0553 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YP_0553 IPR008334 5'-Nucleotidase, C-terminal YP_0553 IPR041827 CpdB, N-terminal metallophosphatase domain YP_0553 IPR006146 5'-Nucleotidase, conserved site YP_0553 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase YP_0553 IPR029052 Metallo-dependent phosphatase-like YP_0553 IPR006179 5'-Nucleotidase/apyrase YP_0553 IPR036907 5'-Nucleotidase, C-terminal domain superfamily YP_0554 IPR020550 Inositol monophosphatase, conserved site YP_0554 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ YP_0554 IPR020583 Inositol monophosphatase, metal-binding site YP_0554 IPR000760 Inositol monophosphatase-like YP_0555 IPR006513 Conserved hypothetical protein CHP01626, YtfJ YP_0556 IPR009491 Protein of unknown function DUF1107 YP_0557 IPR000644 CBS domain YP_0557 IPR002550 CNNM, transmembrane domain YP_0557 IPR036318 FAD-binding, type PCMH-like superfamily YP_0557 IPR016169 FAD-binding, type PCMH, subdomain 2 YP_0557 IPR005170 Transporter-associated domain YP_0558 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily YP_0558 IPR002569 Peptide methionine sulphoxide reductase MsrA YP_0559 IPR010827 POTRA domain, BamA/TamA-like YP_0559 IPR034746 POTRA domain YP_0559 IPR000184 Bacterial surface antigen (D15) YP_0559 IPR035243 TamA, POTRA domain 1 YP_0559 IPR039910 Surface antigen D15-like YP_0560 IPR007452 Translocation and assembly module TamB YP_0561 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like YP_0561 IPR039126 Gamma-glutamylaminecyclotransferase YP_0561 IPR013024 Gamma-glutamyl cyclotransferase-like YP_0561 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily YP_0562 IPR036649 Inorganic pyrophosphatase superfamily YP_0562 IPR008162 Inorganic pyrophosphatase YP_0563 IPR000146 Fructose-1,6-bisphosphatase class 1 YP_0563 IPR020548 Fructose-1,6-bisphosphatase, active site YP_0563 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal YP_0563 IPR028343 Fructose-1,6-bisphosphatase YP_0564 IPR000713 Mur ligase, N-terminal catalytic domain YP_0564 IPR036615 Mur ligase, C-terminal domain superfamily YP_0564 IPR004101 Mur ligase, C-terminal YP_0564 IPR036565 Mur-like, catalytic domain superfamily YP_0564 IPR005757 Murein peptide ligase YP_0564 IPR013221 Mur ligase, central YP_0566 IPR036251 Arginine repressor, C-terminal domain superfamily YP_0566 IPR020899 Arginine repressor, C-terminal YP_0566 IPR001669 Arginine repressor YP_0566 IPR020900 Arginine repressor, DNA-binding domain YP_0566 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0566 IPR036390 Winged helix DNA-binding domain superfamily YP_0567 IPR022383 Lactate/malate dehydrogenase, C-terminal YP_0567 IPR001252 Malate dehydrogenase, active site YP_0567 IPR001557 L-lactate/malate dehydrogenase YP_0567 IPR010097 Malate dehydrogenase, type 1 YP_0567 IPR023958 Malate dehydrogenase, type 1, bacterial YP_0567 IPR036291 NAD(P)-binding domain superfamily YP_0567 IPR001236 Lactate/malate dehydrogenase, N-terminal YP_0567 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal YP_0568 IPR038722 Ner, winged helix-turn-helix DNA-binding domain YP_0568 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_0570 IPR008949 Isoprenoid synthase domain superfamily YP_0570 IPR033749 Polyprenyl synthetase, conserved site YP_0570 IPR000092 Polyprenyl synthetase YP_0571 IPR018258 Ribosomal protein L21, conserved site YP_0571 IPR001787 Ribosomal protein L21 YP_0571 IPR028909 Ribosomal protein L21-like YP_0571 IPR036164 L21-like superfamily YP_0572 IPR001684 Ribosomal protein L27 YP_0572 IPR018261 Ribosomal protein L27, conserved site YP_0573 IPR000620 EamA domain YP_0574 IPR035101 GTP-binding protein, Obg-type YP_0574 IPR031167 OBG-type guanine nucleotide-binding (G) domain YP_0574 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0574 IPR006073 GTP binding domain YP_0574 IPR006074 GTP1/OBG, conserved site YP_0574 IPR006169 GTP1/OBG domain YP_0574 IPR014100 GTP-binding protein Obg/CgtA YP_0574 IPR036726 GTP1/OBG domain superfamily YP_0575 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_0575 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_0575 IPR005467 Histidine kinase domain YP_0575 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0575 IPR003594 Histidine kinase/HSP90-like ATPase YP_0575 IPR003660 HAMP domain YP_0575 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_0576 IPR001789 Signal transduction response regulator, receiver domain YP_0576 IPR011006 CheY-like superfamily YP_0576 IPR001867 OmpR/PhoB-type DNA-binding domain YP_0576 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0576 IPR039420 Transcriptional regulatory protein WalR-like YP_0577 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C YP_0577 IPR012338 Beta-lactamase/transpeptidase-like YP_0578 IPR023459 Transcription elongation factor GreA/GreB family YP_0578 IPR028624 Transcription elongation factor GreA/GreB YP_0578 IPR006359 Transcription elongation factor GreA YP_0578 IPR018151 Transcription elongation factor, GreA/GreB, conserved site YP_0578 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily YP_0578 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal YP_0578 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily YP_0578 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YP_0579 IPR001890 RNA-binding, CRM domain YP_0579 IPR017924 RNA-binding protein YhbY YP_0579 IPR035920 YhbY-like superfamily YP_0580 IPR015507 Ribosomal RNA large subunit methyltransferase E YP_0580 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria YP_0580 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0580 IPR002877 Ribosomal RNA methyltransferase FtsJ domain YP_0581 IPR003593 AAA+ ATPase domain YP_0581 IPR037219 Peptidase M41-like YP_0581 IPR000642 Peptidase M41 YP_0581 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0581 IPR041569 AAA ATPase, AAA+ lid domain YP_0581 IPR003960 ATPase, AAA-type, conserved site YP_0581 IPR005936 Peptidase, FtsH YP_0581 IPR011546 Peptidase M41, FtsH extracellular YP_0581 IPR003959 ATPase, AAA-type, core YP_0582 IPR011005 Dihydropteroate synthase-like YP_0582 IPR006390 Dihydropteroate synthase YP_0582 IPR000489 Pterin-binding domain YP_0583 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YP_0583 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YP_0583 IPR005843 Alpha-D-phosphohexomutase, C-terminal YP_0583 IPR006352 Phosphoglucosamine mutase, bacterial type YP_0583 IPR005841 Alpha-D-phosphohexomutase superfamily YP_0583 IPR016066 Alpha-D-phosphohexomutase, conserved site YP_0583 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YP_0583 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YP_0583 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YP_0584 IPR004692 Preprotein translocase SecG subunit YP_0585 IPR003728 Ribosome maturation factor RimP YP_0585 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily YP_0585 IPR028998 Ribosome maturation factor RimP, C-terminal YP_0585 IPR035956 RimP, N-terminal domain superfamily YP_0585 IPR028989 Ribosome maturation factor RimP, N-terminal YP_0586 IPR003029 S1 domain YP_0586 IPR022967 RNA-binding domain, S1 YP_0586 IPR010213 Transcription termination factor NusA YP_0586 IPR025249 KH domain, NusA-like YP_0586 IPR036555 NusA, N-terminal domain superfamily YP_0586 IPR030842 Transcription termination/antitermination protein NusA, bacterial YP_0586 IPR012340 Nucleic acid-binding, OB-fold YP_0586 IPR009019 K homology domain superfamily, prokaryotic type YP_0586 IPR010214 Transcription termination factor NusA, C-terminal duplication YP_0586 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical YP_0586 IPR015946 K homology domain-like, alpha/beta YP_0586 IPR013735 Transcription factor NusA, N-terminal YP_0587 IPR004161 Translation elongation factor EFTu-like, domain 2 YP_0587 IPR013575 Initiation factor 2 associated domain, bacterial YP_0587 IPR006847 Translation initiation factor IF-2, N-terminal YP_0587 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0587 IPR009000 Translation protein, beta-barrel domain superfamily YP_0587 IPR009061 Putative DNA-binding domain superfamily YP_0587 IPR005225 Small GTP-binding protein domain YP_0587 IPR000795 Transcription factor, GTP-binding domain YP_0587 IPR000178 Translation initiation factor aIF-2, bacterial-like YP_0587 IPR015760 Translation initiation factor IF- 2 YP_0587 IPR036925 Translation initiation factor IF-2, domain 3 superfamily YP_0587 IPR023115 Translation initiation factor IF- 2, domain 3 YP_0588 IPR023799 Ribosome-binding factor A domain superfamily YP_0588 IPR015946 K homology domain-like, alpha/beta YP_0588 IPR020053 Ribosome-binding factor A, conserved site YP_0588 IPR000238 Ribosome-binding factor A YP_0589 IPR036974 PUA domain superfamily YP_0589 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal YP_0589 IPR032819 tRNA pseudouridylate synthase B, C-terminal YP_0589 IPR015947 PUA-like superfamily YP_0589 IPR020103 Pseudouridine synthase, catalytic domain superfamily YP_0589 IPR014780 tRNA pseudouridine synthase II, TruB YP_0589 IPR002501 Pseudouridine synthase II, N-terminal YP_0590 IPR000589 Ribosomal protein S15 YP_0590 IPR009068 S15/NS1, RNA-binding YP_0590 IPR005290 Ribosomal protein S15, bacterial-type YP_0592 IPR036397 Ribonuclease H superfamily YP_0592 IPR012337 Ribonuclease H-like superfamily YP_0592 IPR001584 Integrase, catalytic core YP_0592 IPR038965 Transposase InsF-like YP_0592 IPR025948 HTH-like domain YP_0593 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain YP_0593 IPR027408 PNPase/RNase PH domain superfamily YP_0593 IPR012162 Polyribonucleotide nucleotidyltransferase YP_0593 IPR012340 Nucleic acid-binding, OB-fold YP_0593 IPR036612 K Homology domain, type 1 superfamily YP_0593 IPR004088 K Homology domain, type 1 YP_0593 IPR001247 Exoribonuclease, phosphorolytic domain 1 YP_0593 IPR015847 Exoribonuclease, phosphorolytic domain 2 YP_0593 IPR004087 K Homology domain YP_0593 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0593 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily YP_0593 IPR036345 Exoribonuclease, PH domain 2 superfamily YP_0593 IPR022967 RNA-binding domain, S1 YP_0593 IPR003029 S1 domain YP_0594 IPR019734 Tetratricopeptide repeat YP_0594 IPR013026 Tetratricopeptide repeat-containing domain YP_0594 IPR023605 Lipoprotein NlpI YP_0594 IPR013105 Tetratricopeptide repeat 2 YP_0594 IPR011990 Tetratricopeptide-like helical domain superfamily YP_0595 IPR028618 ATP-dependent RNA helicase DeaD YP_0595 IPR021046 Cold-shock protein, DEAD box A, C-terminal YP_0595 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_0595 IPR011545 DEAD/DEAH box helicase domain YP_0595 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain YP_0595 IPR001650 Helicase, C-terminal YP_0595 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YP_0595 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0595 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YP_0595 IPR014014 RNA helicase, DEAD-box type, Q motif YP_0595 IPR034415 CsdA, RNA recognition motif YP_0598 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_0598 IPR001387 Cro/C1-type helix-turn-helix domain YP_0599 IPR019949 Luciferase family oxidoreductase, group 1 YP_0599 IPR036661 Luciferase-like domain superfamily YP_0599 IPR011251 Luciferase-like domain YP_0600 IPR006143 RND efflux pump, membrane fusion protein YP_0600 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_0601 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YP_0601 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_0601 IPR001036 Acriflavin resistance protein YP_0602 IPR012640 Membrane lipoprotein, lipid attachment site YP_0602 IPR003423 Outer membrane efflux protein YP_0602 IPR010131 RND efflux system, outer membrane lipoprotein, NodT YP_0607 IPR016181 Acyl-CoA N-acyltransferase YP_0607 IPR000182 GNAT domain YP_0608 IPR000305 GIY-YIG endonuclease YP_0608 IPR035901 GIY-YIG endonuclease superfamily YP_0608 IPR022992 Uncharacterised protein family UPF0213, GIY-YIG endonuclease YP_0611 IPR006059 Bacterial extracellular solute-binding protein YP_0613 IPR035906 MetI-like superfamily YP_0613 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_0616 IPR011194 Uncharacterised protein family UPF0306 YP_0616 IPR012349 FMN-binding split barrel YP_0617 IPR000534 Semialdehyde dehydrogenase, NAD-binding YP_0617 IPR036291 NAD(P)-binding domain superfamily YP_0617 IPR016040 NAD(P)-binding domain YP_0618 IPR017693 Phosphonate metabolism protein PhnP YP_0618 IPR001279 Metallo-beta-lactamase YP_0618 IPR035682 Phosphonate metabolism protein, MBL domain YP_0618 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_0619 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YP_0619 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN YP_0619 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0619 IPR008144 Guanylate kinase-like domain YP_0620 IPR011059 Metal-dependent hydrolase, composite domain superfamily YP_0620 IPR012696 Phosphonate metabolism PhnM YP_0620 IPR032466 Metal-dependent hydrolase YP_0620 IPR013108 Amidohydrolase 3 YP_0621 IPR012701 Phosphonate C-P lyase system, PhnL YP_0621 IPR003439 ABC transporter-like YP_0621 IPR017871 ABC transporter, conserved site YP_0621 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0621 IPR003593 AAA+ ATPase domain YP_0623 IPR017871 ABC transporter, conserved site YP_0623 IPR003439 ABC transporter-like YP_0623 IPR003593 AAA+ ATPase domain YP_0623 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0623 IPR012700 Phosphonate C-P lyase system, PhnK YP_0624 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase YP_0625 IPR008773 Phosphonate metabolism protein PhnI YP_0626 IPR038058 PhnH-like superfamily YP_0626 IPR008772 Bacterial phosphonate metabolism, PhnH YP_0627 IPR009609 Phosphonate metabolism PhnG YP_0628 IPR036390 Winged helix DNA-binding domain superfamily YP_0628 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0628 IPR000524 Transcription regulator HTH, GntR YP_0628 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YP_0628 IPR011663 UbiC transcription regulator-associated YP_0628 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF YP_0630 IPR034457 Organic radical-activating enzymes YP_0630 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic YP_0630 IPR013785 Aldolase-type TIM barrel YP_0630 IPR001989 Radical-activating enzyme, conserved site YP_0631 IPR005144 ATP-cone domain YP_0631 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic YP_0631 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YP_0631 IPR001150 Glycine radical domain YP_0632 IPR003439 ABC transporter-like YP_0632 IPR017871 ABC transporter, conserved site YP_0632 IPR003593 AAA+ ATPase domain YP_0632 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YP_0632 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0633 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0633 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YP_0633 IPR003593 AAA+ ATPase domain YP_0633 IPR003439 ABC transporter-like YP_0633 IPR017871 ABC transporter, conserved site YP_0634 IPR035906 MetI-like superfamily YP_0634 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_0634 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YP_0635 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_0635 IPR035906 MetI-like superfamily YP_0637 IPR037012 YhcH/YjgK/YiaL superfamily YP_0637 IPR004375 YhcH/YjgK/YiaL family YP_0638 IPR024904 Ornithine carbamoyltransferase YP_0638 IPR002292 Ornithine/putrescine carbamoyltransferase YP_0638 IPR006130 Aspartate/ornithine carbamoyltransferase YP_0638 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily YP_0638 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YP_0638 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YP_0639 IPR036701 RraB-like superfamily YP_0639 IPR016716 Regulator of ribonuclease activity B YP_0639 IPR009671 Regulator of ribonuclease activity B domain YP_0640 IPR016181 Acyl-CoA N-acyltransferase YP_0640 IPR000182 GNAT domain YP_0641 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm YP_0641 IPR002300 Aminoacyl-tRNA synthetase, class Ia YP_0641 IPR033705 Valyl tRNA synthetase, anticodon-binding domain YP_0641 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YP_0641 IPR002303 Valine-tRNA ligase YP_0641 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0641 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm YP_0641 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YP_0641 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily YP_0641 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YP_0641 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YP_0642 IPR036768 DNA polymerase III subunit chi superfamily YP_0642 IPR007459 DNA polymerase III chi subunit, HolC YP_0643 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal YP_0643 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal YP_0643 IPR023042 Peptidase M17, leucine aminopeptidase YP_0643 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B YP_0644 IPR030922 LPS export ABC transporter permease LptF YP_0644 IPR005495 Permease LptG/LptF-related YP_0645 IPR030923 LPS export ABC transporter permease LptG YP_0645 IPR005495 Permease LptG/LptF-related YP_0646 IPR010998 Integrase/recombinase, N-terminal YP_0646 IPR013762 Integrase-like, catalytic domain superfamily YP_0646 IPR038488 Integrase, DNA-binding domain superfamily YP_0646 IPR025166 Integrase, DNA-binding domain YP_0646 IPR011010 DNA breaking-rejoining enzyme, catalytic core YP_0646 IPR002104 Integrase, catalytic domain YP_0649 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0649 IPR002611 IstB-like ATP-binding protein YP_0649 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0649 IPR001270 ClpA/B family YP_0649 IPR003593 AAA+ ATPase domain YP_0650 IPR001584 Integrase, catalytic core YP_0650 IPR017894 HTH domain, IS21 transposase-type YP_0650 IPR006120 Resolvase, HTH domain YP_0650 IPR036397 Ribonuclease H superfamily YP_0650 IPR012337 Ribonuclease H-like superfamily YP_0651 IPR036515 Transposase IS200-like superfamily YP_0651 IPR002686 Transposase IS200-like YP_0652 IPR036567 Ribosome hibernation promotion factor-like YP_0652 IPR003489 Ribosome hibernation promoting factor/RaiA YP_0653 IPR039565 Outer membrane lipoprotein BamD-like YP_0653 IPR017689 Outer membrane protein assembly factor BamD YP_0653 IPR011990 Tetratricopeptide-like helical domain superfamily YP_0654 IPR036986 RNA-binding S4 domain superfamily YP_0654 IPR002942 RNA-binding S4 domain YP_0654 IPR020103 Pseudouridine synthase, catalytic domain superfamily YP_0654 IPR006145 Pseudouridine synthase, RsuA/RluA YP_0654 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YP_0654 IPR006225 Pseudouridine synthase, RluC/RluD YP_0656 IPR028299 ClpA/B, conserved site 2 YP_0656 IPR018368 ClpA/B, conserved site 1 YP_0656 IPR001270 ClpA/B family YP_0656 IPR004176 Clp, N-terminal YP_0656 IPR036628 Clp, N-terminal domain superfamily YP_0656 IPR041546 ClpA/ClpB, AAA lid domain YP_0656 IPR019489 Clp ATPase, C-terminal YP_0656 IPR017730 Chaperonin ClpB YP_0656 IPR003959 ATPase, AAA-type, core YP_0656 IPR003593 AAA+ ATPase domain YP_0656 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0657 IPR017028 Uncharacterised conserved protein UCP034456 YP_0657 IPR018736 Protein of unknown function DUF2279, periplasmic lipoprotein YP_0658 IPR016270 CDP-alcohol phosphatidyltransferase class-II family YP_0658 IPR025202 Phospholipase D-like domain YP_0658 IPR001736 Phospholipase D/Transphosphatidylase YP_0659 IPR016181 Acyl-CoA N-acyltransferase YP_0659 IPR013815 ATP-grasp fold, subdomain 1 YP_0659 IPR003781 CoA-binding YP_0659 IPR000182 GNAT domain YP_0659 IPR036291 NAD(P)-binding domain superfamily YP_0659 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain YP_0659 IPR016102 Succinyl-CoA synthetase-like YP_0659 IPR011761 ATP-grasp fold YP_0661 IPR017937 Thioredoxin, conserved site YP_0661 IPR013766 Thioredoxin domain YP_0661 IPR036249 Thioredoxin-like superfamily YP_0661 IPR005746 Thioredoxin YP_0662 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted YP_0662 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YP_0662 IPR029028 Alpha/beta knot methyltransferases YP_0662 IPR029064 50S ribosomal protein L30e-like YP_0662 IPR004441 RNA methyltransferase TrmH family YP_0662 IPR001537 tRNA/rRNA methyltransferase, SpoU type YP_0662 IPR013123 RNA 2-O ribose methyltransferase, substrate binding YP_0663 IPR011701 Major facilitator superfamily YP_0663 IPR020846 Major facilitator superfamily domain YP_0663 IPR036259 MFS transporter superfamily YP_0663 IPR004638 Drug resistance transporter EmrB-like YP_0664 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_0664 IPR005694 Efflux pump membrane protein YP_0666 IPR036390 Winged helix DNA-binding domain superfamily YP_0666 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0666 IPR000835 MarR-type HTH domain YP_0666 IPR023187 Transcriptional regulator MarR-type, conserved site YP_0667 IPR008407 Branched-chain amino acid transport, AzlD YP_0668 IPR011606 Branched-chain amino acid transport, permease YP_0669 IPR036259 MFS transporter superfamily YP_0669 IPR020846 Major facilitator superfamily domain YP_0669 IPR011701 Major facilitator superfamily YP_0671 IPR000120 Amidase YP_0671 IPR023631 Amidase signature domain YP_0671 IPR036928 Amidase signature (AS) superfamily YP_0671 IPR014087 1-carboxybiuret hydrolase, AtzE subunit YP_0676 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_0676 IPR018313 Solute-binding protein family 3, conserved site YP_0676 IPR001320 Ionotropic glutamate receptor YP_0676 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YP_0677 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_0677 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YP_0677 IPR035906 MetI-like superfamily YP_0679 IPR017871 ABC transporter, conserved site YP_0679 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0679 IPR003593 AAA+ ATPase domain YP_0679 IPR003439 ABC transporter-like YP_0679 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YP_0681 IPR003593 AAA+ ATPase domain YP_0681 IPR001270 ClpA/B family YP_0681 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0681 IPR002611 IstB-like ATP-binding protein YP_0681 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0682 IPR006120 Resolvase, HTH domain YP_0682 IPR001584 Integrase, catalytic core YP_0682 IPR017894 HTH domain, IS21 transposase-type YP_0682 IPR036397 Ribonuclease H superfamily YP_0682 IPR012337 Ribonuclease H-like superfamily YP_0683 IPR002933 Peptidase M20 YP_0683 IPR036264 Bacterial exopeptidase dimerisation domain YP_0683 IPR010158 Amidase, carbamoylase-type YP_0683 IPR011650 Peptidase M20, dimerisation domain YP_0684 IPR034746 POTRA domain YP_0684 IPR005565 Haemolysin activator HlyB, C-terminal YP_0684 IPR013686 Polypeptide-transport-associated, ShlB-type YP_0685 IPR011050 Pectin lyase fold/virulence factor YP_0685 IPR012334 Pectin lyase fold YP_0685 IPR008638 Filamentous haemagglutinin, N-terminal YP_0686 IPR041109 HMW1C N-terminal YP_0686 IPR040542 HMW1 domain 2 YP_0688 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily YP_0688 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily YP_0688 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type YP_0688 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal YP_0688 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal YP_0688 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal YP_0689 IPR035461 GmhA/DiaA YP_0689 IPR001347 Sugar isomerase (SIS) YP_0689 IPR004515 Phosphoheptose isomerase YP_0690 IPR017932 Glutamine amidotransferase type 2 domain YP_0690 IPR029055 Nucleophile aminohydrolases, N-terminal YP_0690 IPR026869 Putative glutamine amidotransferase type 2 YP_0691 IPR005490 L,D-transpeptidase catalytic domain YP_0691 IPR038063 L,D-transpeptidase catalytic domain-like YP_0693 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain YP_0693 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A YP_0694 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B YP_0694 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD YP_0695 IPR007329 FMN-binding YP_0695 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C YP_0696 IPR003667 NqrDE/RnfAE YP_0696 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D YP_0697 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E YP_0697 IPR003667 NqrDE/RnfAE YP_0698 IPR012675 Beta-grasp domain superfamily YP_0698 IPR017938 Riboflavin synthase-like beta-barrel YP_0698 IPR001433 Oxidoreductase FAD/NAD(P)-binding YP_0698 IPR036010 2Fe-2S ferredoxin-like superfamily YP_0698 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F YP_0698 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_0698 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YP_0698 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YP_0698 IPR017927 FAD-binding domain, ferredoxin reductase-type YP_0698 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YP_0699 IPR024932 Flavin transferase ApbE YP_0699 IPR003374 ApbE-like superfamily YP_0699 IPR042159 Flavin-trafficking protein ApbE YP_0701 IPR030395 Glycerophosphodiester phosphodiesterase domain YP_0701 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YP_0702 IPR001126 UmuC domain YP_0702 IPR036775 DNA polymerase, Y-family, little finger domain superfamily YP_0702 IPR017961 DNA polymerase, Y-family, little finger domain YP_0702 IPR022880 DNA polymerase IV YP_0702 IPR024728 DNA polymerase type-Y, HhH motif YP_0703 IPR011650 Peptidase M20, dimerisation domain YP_0703 IPR001160 Peptidase M20C, Xaa-His dipeptidase YP_0703 IPR002933 Peptidase M20 YP_0705 IPR005119 LysR, substrate-binding YP_0705 IPR036390 Winged helix DNA-binding domain superfamily YP_0705 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0705 IPR000847 Transcription regulator HTH, LysR YP_0708 IPR023747 Xanthine-guanine phosphoribosyltransferase YP_0708 IPR029057 Phosphoribosyltransferase-like YP_0708 IPR000836 Phosphoribosyltransferase domain YP_0710 IPR009986 Sigma factor-binding transcriptional regulator Crl YP_0710 IPR038208 Sigma factor-binding protein Crl superfamily YP_0711 IPR036393 Acetylglutamate kinase-like superfamily YP_0711 IPR041739 Glutamate-5-kinase domain YP_0711 IPR001057 Glutamate/acetylglutamate kinase YP_0711 IPR011529 Glutamate 5-kinase YP_0711 IPR019797 Glutamate 5-kinase, conserved site YP_0711 IPR002478 PUA domain YP_0711 IPR015947 PUA-like superfamily YP_0711 IPR036974 PUA domain superfamily YP_0711 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase YP_0711 IPR001048 Aspartate/glutamate/uridylate kinase YP_0712 IPR016162 Aldehyde dehydrogenase, N-terminal YP_0712 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site YP_0712 IPR015590 Aldehyde dehydrogenase domain YP_0712 IPR012134 Glutamate-5-semialdehyde dehydrogenase YP_0712 IPR016163 Aldehyde dehydrogenase, C-terminal YP_0712 IPR000965 GPR domain YP_0712 IPR016161 Aldehyde/histidinol dehydrogenase YP_0714 IPR009875 PilZ domain YP_0714 IPR012349 FMN-binding split barrel YP_0714 IPR023787 Type III secretion system flagellar brake protein YcgR YP_0714 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal YP_0717 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0717 IPR013216 Methyltransferase type 11 YP_0720 IPR023000 Shikimate kinase, conserved site YP_0720 IPR027544 Shikimate kinase 2 YP_0720 IPR000623 Shikimate kinase/Threonine synthase-like 1 YP_0720 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0720 IPR031322 Shikimate kinase/gluconokinase YP_0722 IPR014710 RmlC-like jelly roll fold YP_0722 IPR009664 Pyrimidine/purine nucleoside phosphorylase YP_0722 IPR011051 RmlC-like cupin domain superfamily YP_0723 IPR007476 Putative exonuclease, RdgC YP_0724 IPR000600 ROK family YP_0725 IPR004592 Nuclease SbcC, gammaproteobacteria type YP_0725 IPR038729 Rad50/SbcC-type AAA domain YP_0725 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0726 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain YP_0726 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YP_0726 IPR026843 Nuclease SbcCD subunit D, C-terminal domain YP_0726 IPR029052 Metallo-dependent phosphatase-like YP_0726 IPR004593 Nuclease SbcCD subunit D YP_0727 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0727 IPR011006 CheY-like superfamily YP_0727 IPR001867 OmpR/PhoB-type DNA-binding domain YP_0727 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB YP_0727 IPR001789 Signal transduction response regulator, receiver domain YP_0727 IPR039420 Transcriptional regulatory protein WalR-like YP_0728 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_0728 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_0728 IPR000014 PAS domain YP_0728 IPR035965 PAS domain superfamily YP_0728 IPR013767 PAS fold YP_0728 IPR021766 Phosphate regulon sensor protein PhoR YP_0728 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0728 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR YP_0728 IPR003594 Histidine kinase/HSP90-like ATPase YP_0728 IPR005467 Histidine kinase domain YP_0728 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_0729 IPR011862 Phosphate binding protein YP_0729 IPR024370 PBP domain YP_0730 IPR004685 Branched-chain amino acid transport system II carrier protein YP_0731 IPR004840 Amino acid permease, conserved site YP_0731 IPR004841 Amino acid permease/ SLC12A domain YP_0732 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain YP_0732 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YP_0732 IPR017853 Glycoside hydrolase superfamily YP_0732 IPR014756 Immunoglobulin E-set YP_0732 IPR017069 Maltodextrin glucosidase YP_0732 IPR013780 Glycosyl hydrolase, all-beta YP_0733 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YP_0733 IPR036291 NAD(P)-binding domain superfamily YP_0733 IPR020904 Short-chain dehydrogenase/reductase, conserved site YP_0733 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0737 IPR019479 Peroxiredoxin, C-terminal YP_0737 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YP_0737 IPR024706 Peroxiredoxin, AhpC-type YP_0737 IPR036249 Thioredoxin-like superfamily YP_0737 IPR013766 Thioredoxin domain YP_0738 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria YP_0738 IPR007431 Acyl carrier protein phosphodiesterase YP_0739 IPR042119 QueA, domain 2 YP_0739 IPR042118 QueA, domain 1 YP_0739 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA YP_0739 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily YP_0740 IPR002616 tRNA-guanine(15) transglycosylase-like YP_0740 IPR036511 Queuine tRNA-ribosyltransferase-like YP_0740 IPR004803 tRNA-guanine transglycosylase YP_0741 IPR003849 Preprotein translocase YajC YP_0742 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YP_0742 IPR027398 SecD export protein N-terminal TM domain YP_0742 IPR005791 Protein translocase subunit SecD YP_0742 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YP_0742 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YP_0743 IPR005665 Protein-export membrane protein SecF, bacterial YP_0743 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YP_0743 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YP_0743 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YP_0744 IPR036515 Transposase IS200-like superfamily YP_0744 IPR002686 Transposase IS200-like YP_0747 IPR003796 Ribonucleotide reductase regulator NrdR-like YP_0747 IPR005144 ATP-cone domain YP_0748 IPR024072 Dihydrofolate reductase-like domain superfamily YP_0748 IPR004794 Riboflavin biosynthesis protein RibD YP_0748 IPR016193 Cytidine deaminase-like YP_0748 IPR002125 Cytidine and deoxycytidylate deaminase domain YP_0748 IPR016192 APOBEC/CMP deaminase, zinc-binding YP_0748 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal YP_0748 IPR011549 Riboflavin-specific deaminase, C-terminal YP_0749 IPR034964 Lumazine synthase YP_0749 IPR002180 Lumazine/riboflavin synthase YP_0749 IPR036467 Lumazine/riboflavin synthase superfamily YP_0750 IPR035926 NusB-like superfamily YP_0750 IPR011605 NusB antitermination factor YP_0750 IPR006027 NusB/RsmB/TIM44 YP_0751 IPR006283 Thiamine-monophosphate kinase YP_0751 IPR036921 PurM-like, N-terminal domain superfamily YP_0751 IPR036676 PurM-like, C-terminal domain superfamily YP_0751 IPR016188 PurM-like, N-terminal domain YP_0751 IPR010918 PurM-like, C-terminal domain YP_0752 IPR026037 Phosphatidylglycerophosphatase A YP_0752 IPR036681 PgpA-like superfamily YP_0752 IPR007686 YutG/PgpA domain YP_0753 IPR036515 Transposase IS200-like superfamily YP_0753 IPR002686 Transposase IS200-like YP_0754 IPR005474 Transketolase, N-terminal YP_0754 IPR005477 Deoxyxylulose-5-phosphate synthase YP_0754 IPR033248 Transketolase, C-terminal domain YP_0754 IPR020826 Transketolase binding site YP_0754 IPR005475 Transketolase-like, pyrimidine-binding domain YP_0754 IPR029061 Thiamin diphosphate-binding fold YP_0754 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YP_0755 IPR008949 Isoprenoid synthase domain superfamily YP_0755 IPR033749 Polyprenyl synthetase, conserved site YP_0755 IPR000092 Polyprenyl synthetase YP_0756 IPR037004 Exonuclease VII, small subunit superfamily YP_0756 IPR003761 Exonuclease VII, small subunit YP_0758 IPR036873 Rhodanese-like domain superfamily YP_0758 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0758 IPR001763 Rhodanese-like domain YP_0758 IPR020536 Thil, AANH domain YP_0758 IPR004114 THUMP domain YP_0758 IPR003720 tRNA sulfurtransferase ThiI YP_0758 IPR026340 Thiazole biosynthesis domain YP_0759 IPR006287 Protein/nucleic acid deglycase DJ-1 YP_0759 IPR002818 DJ-1/PfpI YP_0759 IPR029062 Class I glutamine amidotransferase-like YP_0760 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YP_0760 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YP_0760 IPR003710 Ketopantoate reductase ApbA/PanE YP_0760 IPR013752 Ketopantoate reductase, C-terminal domain YP_0760 IPR013332 Ketopantoate reductase, N-terminal domain YP_0760 IPR036291 NAD(P)-binding domain superfamily YP_0761 IPR007551 Protein of unknown function DUF520 YP_0761 IPR035570 UPF0234, N-terminal YP_0761 IPR036183 YajQ-like superfamily YP_0761 IPR035571 UPF0234-like, C-terminal YP_0762 IPR036259 MFS transporter superfamily YP_0762 IPR011701 Major facilitator superfamily YP_0762 IPR020846 Major facilitator superfamily domain YP_0763 IPR000537 UbiA prenyltransferase family YP_0763 IPR006369 Protohaem IX farnesyltransferase YP_0763 IPR030470 UbiA prenyltransferase conserved site YP_0764 IPR014210 Cytochrome o ubiquinol oxidase subunit IV YP_0764 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes YP_0765 IPR014206 Cytochrome o ubiquinol oxidase, subunit III YP_0765 IPR033946 Ubiquinol oxidase subunit III domain YP_0765 IPR035973 Cytochrome c oxidase subunit III-like superfamily YP_0765 IPR000298 Cytochrome c oxidase subunit III-like YP_0765 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle YP_0765 IPR024791 Cytochrome c oxidase subunit III YP_0766 IPR036927 Cytochrome c oxidase-like, subunit I superfamily YP_0766 IPR014207 Cytochrome o ubiquinol oxidase, subunit I YP_0766 IPR023616 Cytochrome c oxidase-like, subunit I domain YP_0766 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site YP_0766 IPR000883 Cytochrome c oxidase subunit I YP_0767 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily YP_0767 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain YP_0767 IPR008972 Cupredoxin YP_0767 IPR010514 COX aromatic rich motif YP_0767 IPR002429 Cytochrome c oxidase subunit II-like C-terminal YP_0767 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain YP_0767 IPR006333 Cytochrome o ubiquinol oxidase subunit II YP_0768 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like YP_0768 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily YP_0769 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 YP_0769 IPR011701 Major facilitator superfamily YP_0769 IPR036259 MFS transporter superfamily YP_0769 IPR020846 Major facilitator superfamily domain YP_0770 IPR012640 Membrane lipoprotein, lipid attachment site YP_0770 IPR005619 Uncharacterised protein family, YajG YP_0771 IPR036065 BolA-like superfamily YP_0771 IPR002634 BolA protein YP_0773 IPR008880 Trigger factor, C-terminal YP_0773 IPR036611 Trigger factor ribosome-binding domain superfamily YP_0773 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YP_0773 IPR005215 Trigger factor YP_0773 IPR008881 Trigger factor, ribosome-binding, bacterial YP_0773 IPR037041 Trigger factor, C-terminal domain superfamily YP_0773 IPR027304 Trigger factor/SurA domain superfamily YP_0774 IPR018215 ClpP, Ser active site YP_0774 IPR001907 ATP-dependent Clp protease proteolytic subunit YP_0774 IPR029045 ClpP/crotonase-like domain superfamily YP_0774 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA YP_0774 IPR033135 ClpP, histidine active site YP_0775 IPR038366 Zinc finger, ClpX C4-type superfamily YP_0775 IPR004487 Clp protease, ATP-binding subunit ClpX YP_0775 IPR019489 Clp ATPase, C-terminal YP_0775 IPR003959 ATPase, AAA-type, core YP_0775 IPR003593 AAA+ ATPase domain YP_0775 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0775 IPR010603 Zinc finger, ClpX C4-type YP_0776 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0776 IPR008268 Peptidase S16, active site YP_0776 IPR027065 Lon protease YP_0776 IPR003111 Lon, substrate-binding domain YP_0776 IPR003959 ATPase, AAA-type, core YP_0776 IPR015947 PUA-like superfamily YP_0776 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0776 IPR027543 Lon protease, bacterial YP_0776 IPR003593 AAA+ ATPase domain YP_0776 IPR008269 Peptidase S16, Lon proteolytic domain YP_0776 IPR004815 Lon protease, bacterial/eukaryotic-type YP_0776 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_0777 IPR000119 Histone-like DNA-binding protein YP_0777 IPR020816 Histone-like DNA-binding protein, conserved site YP_0777 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily YP_0778 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YP_0778 IPR027304 Trigger factor/SurA domain superfamily YP_0778 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site YP_0779 IPR010994 RuvA domain 2-like YP_0779 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YP_0779 IPR004509 Competence protein ComEA, helix-hairpin-helix domain YP_0780 IPR029069 HotDog domain superfamily YP_0780 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family YP_0781 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0781 IPR018317 Queuosine biosynthesis protein QueC YP_0782 IPR000914 Solute-binding protein family 5 domain YP_0782 IPR039424 Solute-binding protein family 5 YP_0782 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YP_0783 IPR023214 HAD superfamily YP_0783 IPR036412 HAD-like superfamily YP_0783 IPR023938 HMP-PP phosphatase YP_0783 IPR006379 HAD-superfamily hydrolase, subfamily IIB YP_0783 IPR000150 Cof family YP_0784 IPR001926 Pyridoxal-phosphate dependent enzyme YP_0784 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_0784 IPR005856 Cysteine synthase YP_0784 IPR005859 Cysteine synthase CysK YP_0784 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YP_0785 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YP_0785 IPR036390 Winged helix DNA-binding domain superfamily YP_0785 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0785 IPR011991 ArsR-like helix-turn-helix domain YP_0785 IPR000485 AsnC-type HTH domain YP_0785 IPR011008 Dimeric alpha-beta barrel YP_0785 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YP_0785 IPR019888 Transcription regulator AsnC-type YP_0786 IPR003593 AAA+ ATPase domain YP_0786 IPR011527 ABC transporter type 1, transmembrane domain YP_0786 IPR036640 ABC transporter type 1, transmembrane domain superfamily YP_0786 IPR039421 Type I protein exporter YP_0786 IPR003439 ABC transporter-like YP_0786 IPR017871 ABC transporter, conserved site YP_0786 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0787 IPR017871 ABC transporter, conserved site YP_0787 IPR036640 ABC transporter type 1, transmembrane domain superfamily YP_0787 IPR011527 ABC transporter type 1, transmembrane domain YP_0787 IPR003593 AAA+ ATPase domain YP_0787 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0787 IPR039421 Type I protein exporter YP_0787 IPR003439 ABC transporter-like YP_0788 IPR011322 Nitrogen regulatory PII-like, alpha/beta YP_0788 IPR002332 Nitrogen regulatory protein P-II, urydylation site YP_0788 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YP_0788 IPR017918 Nitrogen regulatory protein PII, conserved site YP_0788 IPR002187 Nitrogen regulatory protein PII YP_0789 IPR018047 Ammonium transporter, conserved site YP_0789 IPR024041 Ammonium transporter AmtB-like domain YP_0789 IPR029020 Ammonium/urea transporter YP_0789 IPR001905 Ammonium transporter YP_0790 IPR029069 HotDog domain superfamily YP_0790 IPR003703 Acyl-CoA thioesterase YP_0791 IPR039366 YscW/ExsB YP_0792 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain YP_0792 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YP_0792 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0793 IPR036666 HHA superfamily YP_0793 IPR007985 Haemolysin expression modulating, HHA YP_0794 IPR019693 Biofilm formation regulator YbaJ YP_0796 IPR000473 Ribosomal protein L36 YP_0796 IPR035977 Ribosomal protein L36 superfamily YP_0797 IPR002150 Ribosomal protein L31 YP_0797 IPR034704 L28p-like YP_0797 IPR027493 Ribosomal protein L31 type B YP_0797 IPR042105 Ribosomal protein L31 superfamily YP_0798 IPR001036 Acriflavin resistance protein YP_0798 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_0798 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YP_0799 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_0799 IPR006143 RND efflux pump, membrane fusion protein YP_0800 IPR009057 Homeobox-like domain superfamily YP_0800 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YP_0800 IPR001647 DNA-binding HTH domain, TetR-type YP_0800 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YP_0800 IPR013572 Transcription regulator MAATS, C-terminal YP_0801 IPR003787 Sulphur relay, DsrE/F-like protein YP_0801 IPR027396 DsrEFH-like YP_0802 IPR024393 Mechanosensitive ion channel MscS, porin domain YP_0802 IPR010920 LSM domain superfamily YP_0802 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YP_0802 IPR006686 Mechanosensitive ion channel MscS, conserved site YP_0802 IPR011066 Mechanosensitive ion channel MscS, C-terminal YP_0802 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YP_0802 IPR023408 Mechanosensitive ion channel MscS domain superfamily YP_0802 IPR023298 P-type ATPase, transmembrane domain superfamily YP_0802 IPR006685 Mechanosensitive ion channel MscS YP_0803 IPR019630 Protein of unknown function DUF2496, YbaM-related YP_0805 IPR007401 Protein of unknown function DUF454 YP_0806 IPR029057 Phosphoribosyltransferase-like YP_0806 IPR000836 Phosphoribosyltransferase domain YP_0806 IPR005764 Adenine phosphoribosyl transferase YP_0807 IPR021029 DNA polymerase III, tau subunit, domain V YP_0807 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YP_0807 IPR012763 DNA polymerase III, subunit gamma/ tau YP_0807 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily YP_0807 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV YP_0807 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0807 IPR001270 ClpA/B family YP_0807 IPR003593 AAA+ ATPase domain YP_0807 IPR022754 DNA polymerase III, gamma subunit, domain III YP_0808 IPR004401 Nucleoid-associated protein YbaB/EbfC family YP_0808 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily YP_0809 IPR034137 RecR, TOPRIM domain YP_0809 IPR015967 Recombination protein RecR, conserved site YP_0809 IPR023627 Recombination protein RecR YP_0809 IPR000093 DNA recombination protein RecR YP_0809 IPR006171 TOPRIM domain YP_0809 IPR023628 Recombination protein RecR, C4-type zinc finger YP_0811 IPR001404 Heat shock protein Hsp90 family YP_0811 IPR020575 Heat shock protein Hsp90, N-terminal YP_0811 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0811 IPR019805 Heat shock protein Hsp90, conserved site YP_0811 IPR003594 Histidine kinase/HSP90-like ATPase YP_0811 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0811 IPR037196 HSP90, C-terminal domain YP_0812 IPR006259 Adenylate kinase subfamily YP_0812 IPR000850 Adenylate kinase/UMP-CMP kinase YP_0812 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0812 IPR007862 Adenylate kinase, active site lid domain YP_0812 IPR033690 Adenylate kinase, conserved site YP_0813 IPR019772 Ferrochelatase, active site YP_0813 IPR001015 Ferrochelatase YP_0813 IPR033644 Ferrochelatase, C-terminal YP_0813 IPR033659 Ferrochelatase, N-terminal YP_0814 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YP_0814 IPR001433 Oxidoreductase FAD/NAD(P)-binding YP_0814 IPR017938 Riboflavin synthase-like beta-barrel YP_0814 IPR012675 Beta-grasp domain superfamily YP_0814 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YP_0814 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_0814 IPR036010 2Fe-2S ferredoxin-like superfamily YP_0814 IPR017927 FAD-binding domain, ferredoxin reductase-type YP_0814 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YP_0815 IPR013446 Glucose-1-phosphate cytidylyltransferase YP_0815 IPR005835 Nucleotidyl transferase domain YP_0815 IPR029044 Nucleotide-diphospho-sugar transferases YP_0816 IPR013445 CDP-glucose 4,6-dehydratase YP_0816 IPR036291 NAD(P)-binding domain superfamily YP_0816 IPR016040 NAD(P)-binding domain YP_0817 IPR015424 Pyridoxal phosphate-dependent transferase YP_0817 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_0817 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_0817 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YP_0818 IPR001509 NAD-dependent epimerase/dehydratase YP_0818 IPR036291 NAD(P)-binding domain superfamily YP_0824 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain YP_0824 IPR001296 Glycosyl transferase, family 1 YP_0826 IPR001509 NAD-dependent epimerase/dehydratase YP_0826 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase YP_0826 IPR036291 NAD(P)-binding domain superfamily YP_0828 IPR001173 Glycosyltransferase 2-like YP_0828 IPR029044 Nucleotide-diphospho-sugar transferases YP_0829 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YP_0829 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YP_0829 IPR016066 Alpha-D-phosphohexomutase, conserved site YP_0829 IPR005841 Alpha-D-phosphohexomutase superfamily YP_0829 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YP_0829 IPR005843 Alpha-D-phosphohexomutase, C-terminal YP_0829 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YP_0829 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YP_0830 IPR003856 Polysaccharide chain length determinant N-terminal domain YP_0831 IPR029056 Ribokinase-like YP_0831 IPR011611 Carbohydrate kinase PfkB YP_0831 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YP_0832 IPR004771 K+/H+ exchanger YP_0832 IPR038770 Sodium/solute symporter superfamily YP_0832 IPR036291 NAD(P)-binding domain superfamily YP_0832 IPR003148 Regulator of K+ conductance, N-terminal YP_0832 IPR006153 Cation/H+ exchanger YP_0833 IPR020846 Major facilitator superfamily domain YP_0833 IPR036259 MFS transporter superfamily YP_0833 IPR011701 Major facilitator superfamily YP_0836 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC YP_0836 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily YP_0836 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain YP_0837 IPR002816 TraB family YP_0838 IPR023299 P-type ATPase, cytoplasmic domain N YP_0838 IPR018303 P-type ATPase, phosphorylation site YP_0838 IPR001757 P-type ATPase YP_0838 IPR023298 P-type ATPase, transmembrane domain superfamily YP_0838 IPR017969 Heavy-metal-associated, conserved site YP_0838 IPR036163 Heavy metal-associated domain superfamily YP_0838 IPR023214 HAD superfamily YP_0838 IPR027256 P-type ATPase, subfamily IB YP_0838 IPR036412 HAD-like superfamily YP_0838 IPR008250 P-type ATPase, A domain superfamily YP_0838 IPR006121 Heavy metal-associated domain, HMA YP_0839 IPR011789 Cu(I)-responsive transcriptional regulator YP_0839 IPR009061 Putative DNA-binding domain superfamily YP_0839 IPR000551 MerR-type HTH domain YP_0840 IPR002810 NfeD-like, C-terminal domain YP_0841 IPR018080 Band 7/stomatin-like, conserved site YP_0841 IPR036013 Band 7/SPFH domain superfamily YP_0841 IPR032435 Band 7, C-terminal extension YP_0841 IPR001972 Stomatin family YP_0841 IPR001107 Band 7 domain YP_0842 IPR036249 Thioredoxin-like superfamily YP_0842 IPR013766 Thioredoxin domain YP_0842 IPR011990 Tetratricopeptide-like helical domain superfamily YP_0843 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0843 IPR020904 Short-chain dehydrogenase/reductase, conserved site YP_0843 IPR036291 NAD(P)-binding domain superfamily YP_0844 IPR036514 SGNH hydrolase superfamily YP_0844 IPR013830 SGNH hydrolase-type esterase domain YP_0844 IPR008265 Lipase, GDSL, active site YP_0845 IPR017871 ABC transporter, conserved site YP_0845 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0845 IPR003439 ABC transporter-like YP_0845 IPR003593 AAA+ ATPase domain YP_0846 IPR038766 Membrane component of ABC transporter, predicted YP_0847 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit YP_0847 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain YP_0847 IPR011761 ATP-grasp fold YP_0847 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YP_0847 IPR016185 Pre-ATP-grasp domain superfamily YP_0847 IPR011054 Rudiment single hybrid motif YP_0847 IPR013815 ATP-grasp fold, subdomain 1 YP_0848 IPR035893 PurE domain superfamily YP_0848 IPR000031 PurE domain YP_0848 IPR024694 PurE, prokaryotic type YP_0848 IPR033747 Class I PurE YP_0850 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YP_0850 IPR029052 Metallo-dependent phosphatase-like YP_0850 IPR010138 UDP-2,3-diacylglucosamine hydrolase YP_0851 IPR029000 Cyclophilin-like domain superfamily YP_0851 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain YP_0851 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase YP_0851 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site YP_0852 IPR015803 Cysteine-tRNA ligase YP_0852 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR YP_0852 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YP_0852 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase YP_0852 IPR032678 tRNA synthetases class I, catalytic domain YP_0852 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0853 IPR002686 Transposase IS200-like YP_0853 IPR036515 Transposase IS200-like superfamily YP_0854 IPR002942 RNA-binding S4 domain YP_0854 IPR036986 RNA-binding S4 domain superfamily YP_0855 IPR036291 NAD(P)-binding domain superfamily YP_0855 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site YP_0855 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase YP_0855 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_0855 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YP_0861 IPR011010 DNA breaking-rejoining enzyme, catalytic core YP_0861 IPR010998 Integrase/recombinase, N-terminal YP_0861 IPR002104 Integrase, catalytic domain YP_0861 IPR013762 Integrase-like, catalytic domain superfamily YP_0864 IPR000462 CDP-alcohol phosphatidyltransferase YP_0865 IPR000374 Phosphatidate cytidylyltransferase YP_0866 IPR002123 Phospholipid/glycerol acyltransferase YP_0866 IPR016676 Phospholipid/glycerol acyltransferase, predicted YP_0867 IPR022744 Methyltransferase domain, putative YP_0867 IPR022742 Serine aminopeptidase, S33 YP_0867 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0867 IPR029058 Alpha/Beta hydrolase fold YP_0868 IPR016130 Protein-tyrosine phosphatase, active site YP_0868 IPR003595 Protein-tyrosine phosphatase, catalytic YP_0868 IPR000387 Tyrosine specific protein phosphatases domain YP_0868 IPR020422 Dual specificity protein phosphatase domain YP_0868 IPR029021 Protein-tyrosine phosphatase-like YP_0868 IPR000340 Dual specificity phosphatase, catalytic domain YP_0871 IPR002611 IstB-like ATP-binding protein YP_0871 IPR003593 AAA+ ATPase domain YP_0871 IPR001270 ClpA/B family YP_0871 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0871 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0872 IPR017894 HTH domain, IS21 transposase-type YP_0872 IPR036397 Ribonuclease H superfamily YP_0872 IPR012337 Ribonuclease H-like superfamily YP_0872 IPR006120 Resolvase, HTH domain YP_0872 IPR001584 Integrase, catalytic core YP_0875 IPR029069 HotDog domain superfamily YP_0875 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YP_0875 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA YP_0876 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0876 IPR041699 Lon protease, AAA domain YP_0876 IPR027065 Lon protease YP_0876 IPR008269 Peptidase S16, Lon proteolytic domain YP_0876 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_0877 IPR009390 Macrodomain Ter protein, MatP YP_0877 IPR035087 MatP, N-terminal YP_0877 IPR038339 MatP, N-terminal domain superfamily YP_0877 IPR013321 Arc-type ribbon-helix-helix YP_0877 IPR035375 MatP, C-terminal ribbon-helix-helix domain YP_0878 IPR002686 Transposase IS200-like YP_0878 IPR036515 Transposase IS200-like superfamily YP_0879 IPR007358 Nucleoid-associated protein NdpA YP_0880 IPR023202 YejL-like superfamily YP_0880 IPR009857 Uncharacterised protein family UPF0352 YP_0881 IPR017850 Alkaline-phosphatase-like, core domain superfamily YP_0881 IPR024588 Inner membrane protein YejM, N-terminal YP_0881 IPR000917 Sulfatase, N-terminal YP_0881 IPR012159 Inner membrane protein YejM YP_0883 IPR036624 Hcp1-like superfamily YP_0883 IPR003615 HNH nuclease YP_0883 IPR008514 Type VI secretion system effector, Hcp YP_0886 IPR001360 Glycoside hydrolase family 1 YP_0886 IPR017853 Glycoside hydrolase superfamily YP_0886 IPR018120 Glycoside hydrolase family 1, active site YP_0886 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site YP_0887 IPR000281 Helix-turn-helix protein RpiR YP_0887 IPR001347 Sugar isomerase (SIS) YP_0887 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0887 IPR035472 RpiR-like, SIS domain YP_0887 IPR009057 Homeobox-like domain superfamily YP_0888 IPR037053 Phage tail collar domain superfamily YP_0888 IPR011083 Phage tail collar domain YP_0891 IPR006949 Baseplate protein J-like YP_0899 IPR007067 Tail sheath protein YP_0899 IPR035089 Tail sheath protein, subtilisin-like domain YP_0899 IPR020287 Tail sheath protein, C-terminal domain YP_0903 IPR026040 Hydroxypyruvate isomerase-like YP_0903 IPR036237 Xylose isomerase-like superfamily YP_0903 IPR013022 Xylose isomerase-like, TIM barrel domain YP_0904 IPR001034 DeoR-type HTH domain YP_0904 IPR014036 DeoR C-terminal sensor domain YP_0904 IPR036390 Winged helix DNA-binding domain superfamily YP_0904 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YP_0904 IPR037171 NagB/RpiA transferase-like YP_0904 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0905 IPR001303 Class II aldolase/adducin N-terminal YP_0905 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YP_0906 IPR042213 Nucleotide-binding, C-terminal domain superfamily YP_0906 IPR031475 Nucleotide-binding C-terminal domain YP_0906 IPR010737 Four-carbon acid sugar kinase, N-terminal domain YP_0906 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily YP_0907 IPR010534 Bacteriophage 933W, GpQ YP_0908 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_0908 IPR039418 LexA-like YP_0908 IPR036286 LexA/Signal peptidase-like superfamily YP_0908 IPR015927 Peptidase S24/S26A/S26B/S26C YP_0908 IPR001387 Cro/C1-type helix-turn-helix domain YP_0909 IPR010391 DNA damage-inducible protein DinI-like YP_0909 IPR036687 DinI-like superfamily YP_0910 IPR020080 Outer membrane adhesin/peptidase omptin YP_0910 IPR000036 Peptidase A26, omptin YP_0910 IPR020079 Peptidase A26, omptin, conserved site YP_0911 IPR004090 Chemotaxis methyl-accepting receptor YP_0911 IPR029151 Periplasmic sensor-like domain superfamily YP_0911 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YP_0911 IPR000727 Target SNARE coiled-coil homology domain YP_0911 IPR003660 HAMP domain YP_0911 IPR033479 Double Cache domain 1 YP_0912 IPR001279 Metallo-beta-lactamase YP_0912 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D YP_0912 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_0913 IPR018043 Sodium:galactoside symporter, conserved site YP_0913 IPR036259 MFS transporter superfamily YP_0913 IPR039672 Lactose permease-like YP_0913 IPR001927 Sodium:galactoside symporter YP_0915 IPR012338 Beta-lactamase/transpeptidase-like YP_0915 IPR001466 Beta-lactamase-related YP_0916 IPR001702 Porin, Gram-negative type YP_0916 IPR013793 Porin, Gram-negative type, conserved site YP_0916 IPR001897 Porin, gammaproteobacterial YP_0916 IPR023614 Porin domain superfamily YP_0917 IPR036259 MFS transporter superfamily YP_0917 IPR020846 Major facilitator superfamily domain YP_0917 IPR011701 Major facilitator superfamily YP_0919 IPR000792 Transcription regulator LuxR, C-terminal YP_0919 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0919 IPR001789 Signal transduction response regulator, receiver domain YP_0919 IPR016032 Signal transduction response regulator, C-terminal effector YP_0919 IPR030864 Transcriptional regulatory protein RcsB YP_0919 IPR011006 CheY-like superfamily YP_0920 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_0920 IPR001789 Signal transduction response regulator, receiver domain YP_0920 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_0920 IPR030856 Sensor histidine kinase RcsC YP_0920 IPR038388 RcsC, C-terminal domain superfamily YP_0920 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal YP_0920 IPR005467 Histidine kinase domain YP_0920 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_0920 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0920 IPR003594 Histidine kinase/HSP90-like ATPase YP_0920 IPR011006 CheY-like superfamily YP_0921 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily YP_0921 IPR005743 DNA gyrase, subunit A YP_0921 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat YP_0921 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta YP_0921 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal YP_0921 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YP_0921 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YP_0922 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0922 IPR010233 Ubiquinone biosynthesis O-methyltransferase YP_0923 IPR005144 ATP-cone domain YP_0923 IPR013346 Ribonucleotide reductase, class I , alpha subunit YP_0923 IPR000788 Ribonucleotide reductase large subunit, C-terminal YP_0923 IPR039718 Ribonucleoside-diphosphate reductase large subunit YP_0923 IPR013509 Ribonucleotide reductase large subunit, N-terminal YP_0923 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YP_0924 IPR000358 Ribonucleotide reductase small subunit family YP_0924 IPR030475 Ribonucleotide reductase small subunit, acitve site YP_0924 IPR033909 Ribonucleotide reductase small subunit YP_0924 IPR012348 Ribonucleotide reductase-like YP_0924 IPR009078 Ferritin-like superfamily YP_0925 IPR036010 2Fe-2S ferredoxin-like superfamily YP_0925 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YP_0925 IPR012675 Beta-grasp domain superfamily YP_0925 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YP_0926 IPR005658 Proteinase inhibitor I11, ecotin YP_0926 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria YP_0926 IPR036198 Ecotin superfamily YP_0927 IPR036425 MoaB/Mog-like domain superfamily YP_0927 IPR001453 MoaB/Mog domain YP_0927 IPR008135 Competence-induced protein CinA YP_0927 IPR036653 CinA-like, C-terminal YP_0929 IPR018227 Amino acid/polyamine transporter 2 YP_0929 IPR013059 Tryptophan/tyrosine transporter YP_0929 IPR013061 Tryptophan/tryrosine permease, conserved site YP_0930 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_0930 IPR023614 Porin domain superfamily YP_0930 IPR009998 YfaZ YP_0931 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 YP_0931 IPR010582 Catalase immune-responsive domain YP_0931 IPR040333 Catalase, clade 3 YP_0931 IPR024708 Catalase active site YP_0931 IPR011614 Catalase core domain YP_0931 IPR037060 Catalase core domain superfamily YP_0931 IPR002226 Catalase haem-binding site YP_0931 IPR018028 Catalase, mono-functional, haem-containing YP_0931 IPR020835 Catalase superfamily YP_0932 IPR001650 Helicase, C-terminal YP_0932 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_0932 IPR006554 Helicase-like, DEXD box c2 type YP_0932 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type YP_0932 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0932 IPR010614 DEAD2 YP_0932 IPR006555 ATP-dependent helicase, C-terminal YP_0932 IPR039000 ATP-dependent DNA helicase DinG YP_0933 IPR001897 Porin, gammaproteobacterial YP_0933 IPR001702 Porin, Gram-negative type YP_0933 IPR013793 Porin, Gram-negative type, conserved site YP_0933 IPR023614 Porin domain superfamily YP_0933 IPR033900 Porin domain, Gram-negative type YP_0934 IPR000620 EamA domain YP_0934 IPR004779 Carboxylate/Amino Acid/Amine Transporter YP_0936 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal YP_0936 IPR015424 Pyridoxal phosphate-dependent transferase YP_0936 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_0936 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal YP_0936 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily YP_0936 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_0936 IPR011193 Ornithine/lysine/arginine decarboxylase YP_0936 IPR000310 Orn/Lys/Arg decarboxylase, major domain YP_0937 IPR002293 Amino acid/polyamine transporter I YP_0938 IPR035906 MetI-like superfamily YP_0938 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_0939 IPR003593 AAA+ ATPase domain YP_0939 IPR003439 ABC transporter-like YP_0939 IPR017871 ABC transporter, conserved site YP_0939 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0940 IPR035906 MetI-like superfamily YP_0940 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_0942 IPR036873 Rhodanese-like domain superfamily YP_0942 IPR001307 Thiosulphate sulfurtransferase, conserved site YP_0942 IPR001763 Rhodanese-like domain YP_0945 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0945 IPR017871 ABC transporter, conserved site YP_0945 IPR003439 ABC transporter-like YP_0945 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein YP_0945 IPR003593 AAA+ ATPase domain YP_0946 IPR017871 ABC transporter, conserved site YP_0946 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0946 IPR003593 AAA+ ATPase domain YP_0946 IPR005876 Cobalt transport protein ATP-binding subunit YP_0946 IPR003439 ABC transporter-like YP_0947 IPR001851 ABC transporter, permease YP_0948 IPR001851 ABC transporter, permease YP_0949 IPR002197 DNA binding HTH domain, Fis-type YP_0949 IPR009057 Homeobox-like domain superfamily YP_0949 IPR003593 AAA+ ATPase domain YP_0949 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YP_0949 IPR002078 RNA polymerase sigma factor 54 interaction domain YP_0949 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YP_0949 IPR025944 Sigma-54 interaction domain, conserved site YP_0949 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0949 IPR028082 Periplasmic binding protein-like I YP_0949 IPR000014 PAS domain YP_0950 IPR009921 Domain of unknown function DUF1456 YP_0951 IPR035906 MetI-like superfamily YP_0951 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_0951 IPR005769 ABC transporter, permease PhnE/PtxC YP_0952 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_0952 IPR035906 MetI-like superfamily YP_0952 IPR005769 ABC transporter, permease PhnE/PtxC YP_0953 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein YP_0954 IPR003593 AAA+ ATPase domain YP_0954 IPR017871 ABC transporter, conserved site YP_0954 IPR012693 ABC transporter, phosphonate import, PhnC YP_0954 IPR003439 ABC transporter-like YP_0954 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0955 IPR007341 Transglycosylase-associated protein YP_0958 IPR003615 HNH nuclease YP_0958 IPR002711 HNH endonuclease YP_0959 IPR023577 CYTH domain YP_0959 IPR008173 Adenylyl cyclase CyaB YP_0959 IPR033469 CYTH-like domain superfamily YP_0960 IPR016166 FAD-binding domain, PCMH-type YP_0960 IPR006094 FAD linked oxidase, N-terminal YP_0960 IPR016164 FAD-linked oxidase-like, C-terminal YP_0960 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal YP_0960 IPR016167 FAD-binding, type PCMH, subdomain 1 YP_0960 IPR016169 FAD-binding, type PCMH, subdomain 2 YP_0960 IPR012256 D-lactate dehydrogenase YP_0960 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 YP_0960 IPR036318 FAD-binding, type PCMH-like superfamily YP_0960 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 YP_0961 IPR012338 Beta-lactamase/transpeptidase-like YP_0961 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YP_0961 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YP_0963 IPR035587 DUS-like, FMN-binding domain YP_0963 IPR018517 tRNA-dihydrouridine synthase, conserved site YP_0963 IPR013785 Aldolase-type TIM barrel YP_0963 IPR032886 tRNA-dihydrouridine(16) synthase YP_0963 IPR001269 tRNA-dihydrouridine synthase YP_0963 IPR042270 tRNA-dihydrouridine(16) synthase, C-terminal YP_0965 IPR002686 Transposase IS200-like YP_0965 IPR036515 Transposase IS200-like superfamily YP_0968 IPR001207 Transposase, mutator type YP_0972 IPR009057 Homeobox-like domain superfamily YP_0972 IPR038717 Tc1-like transposase, DDE domain YP_0972 IPR012337 Ribonuclease H-like superfamily YP_0972 IPR025959 Winged helix-turn helix domain YP_0973 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YP_0973 IPR001650 Helicase, C-terminal YP_0973 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0973 IPR014014 RNA helicase, DEAD-box type, Q motif YP_0973 IPR011545 DEAD/DEAH box helicase domain YP_0973 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_0973 IPR028622 ATP-dependent RNA helicase RhlE YP_0974 IPR015292 Transcription regulator YbiH, C-terminal YP_0974 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YP_0974 IPR001647 DNA-binding HTH domain, TetR-type YP_0974 IPR009057 Homeobox-like domain superfamily YP_0974 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YP_0975 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_0975 IPR022936 Uncharacterised protein family UPF0194, membrane protein YbhG YP_0976 IPR017871 ABC transporter, conserved site YP_0976 IPR003439 ABC transporter-like YP_0976 IPR003593 AAA+ ATPase domain YP_0976 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0977 IPR000412 ABC-2 transporter YP_0978 IPR000412 ABC-2 transporter YP_0981 IPR036390 Winged helix DNA-binding domain superfamily YP_0981 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0981 IPR000847 Transcription regulator HTH, LysR YP_0981 IPR005119 LysR, substrate-binding YP_0982 IPR013785 Aldolase-type TIM barrel YP_0982 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_0983 IPR011006 CheY-like superfamily YP_0983 IPR025944 Sigma-54 interaction domain, conserved site YP_0983 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YP_0983 IPR003593 AAA+ ATPase domain YP_0983 IPR001789 Signal transduction response regulator, receiver domain YP_0983 IPR009057 Homeobox-like domain superfamily YP_0983 IPR002197 DNA binding HTH domain, Fis-type YP_0983 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0983 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YP_0983 IPR002078 RNA polymerase sigma factor 54 interaction domain YP_0984 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_0984 IPR029151 Periplasmic sensor-like domain superfamily YP_0984 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_0984 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_0984 IPR005467 Histidine kinase domain YP_0984 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0984 IPR003594 Histidine kinase/HSP90-like ATPase YP_0985 IPR025961 Heavy-metal resistance protein YP_0987 IPR036515 Transposase IS200-like superfamily YP_0987 IPR002686 Transposase IS200-like YP_0988 IPR035994 Nucleoside phosphorylase superfamily YP_0988 IPR011268 Purine nucleoside phosphorylase YP_0988 IPR000845 Nucleoside phosphorylase domain YP_0988 IPR018099 Purine phosphorylase, family 2, conserved site YP_0988 IPR010943 Xanthosine phosphorylase YP_0990 IPR036390 Winged helix DNA-binding domain superfamily YP_0990 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0990 IPR000847 Transcription regulator HTH, LysR YP_0990 IPR005119 LysR, substrate-binding YP_0990 IPR037409 HTH-type transcriptional regulator XapR, PBP2 domain YP_0991 IPR018093 BCCT transporter, conserved site YP_0991 IPR000060 BCCT transporter family YP_0992 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YP_0992 IPR001647 DNA-binding HTH domain, TetR-type YP_0992 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YP_0992 IPR039538 BetI-type transcriptional repressor, C-terminal YP_0992 IPR009057 Homeobox-like domain superfamily YP_0992 IPR017757 Transcriptional repressor BetI YP_0993 IPR016161 Aldehyde/histidinol dehydrogenase YP_0993 IPR016163 Aldehyde dehydrogenase, C-terminal YP_0993 IPR016160 Aldehyde dehydrogenase, cysteine active site YP_0993 IPR016162 Aldehyde dehydrogenase, N-terminal YP_0993 IPR015590 Aldehyde dehydrogenase domain YP_0993 IPR011264 Betaine aldehyde dehydrogenase YP_0993 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YP_0994 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal YP_0994 IPR012132 Glucose-methanol-choline oxidoreductase YP_0994 IPR027424 Glucose Oxidase, domain 2 YP_0994 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0994 IPR011533 Oxygen-dependent choline dehydrogenase YP_0994 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal YP_0995 IPR002686 Transposase IS200-like YP_0995 IPR036515 Transposase IS200-like superfamily YP_0996 IPR006214 Bax inhibitor 1-related YP_0997 IPR003448 Molybdopterin biosynthesis MoaE YP_0997 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily YP_0998 IPR003749 Sulfur carrier ThiS/MoaD-like YP_0998 IPR012675 Beta-grasp domain superfamily YP_0998 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YP_0999 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain YP_0999 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily YP_0999 IPR023045 Molybdenum cofactor biosynthesis C YP_1000 IPR007197 Radical SAM YP_1000 IPR010505 Molybdenum cofactor synthesis C-terminal YP_1000 IPR013483 Molybdenum cofactor biosynthesis protein A YP_1000 IPR006638 Elp3/MiaB/NifB YP_1000 IPR013785 Aldolase-type TIM barrel YP_1000 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site YP_1001 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 YP_1001 IPR038136 Gluconeogenesis factor superfamily YP_1001 IPR010119 Gluconeogenesis factor YP_1002 IPR036361 SAP domain superfamily YP_1002 IPR018668 DNA-binding protein VF530-like YP_1003 IPR004807 UvrABC system, subunit B YP_1003 IPR024759 UvrB, YAD/RRR-motif-containing domain YP_1003 IPR041471 UvrB, interaction domain YP_1003 IPR036876 UVR domain superfamily YP_1003 IPR001943 UVR domain YP_1003 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1003 IPR001650 Helicase, C-terminal YP_1003 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_1003 IPR006935 Helicase/UvrB, N-terminal YP_1006 IPR004472 Dethiobiotin synthase BioD YP_1006 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1007 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC YP_1007 IPR013216 Methyltransferase type 11 YP_1007 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1008 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria YP_1008 IPR015424 Pyridoxal phosphate-dependent transferase YP_1008 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type YP_1008 IPR004839 Aminotransferase, class I/classII YP_1008 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_1008 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YP_1008 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_1009 IPR007197 Radical SAM YP_1009 IPR010722 Biotin and thiamin synthesis-associated domain YP_1009 IPR013785 Aldolase-type TIM barrel YP_1009 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB YP_1009 IPR006638 Elp3/MiaB/NifB YP_1009 IPR024177 Biotin synthase YP_1010 IPR005814 Aminotransferase class-III YP_1010 IPR015424 Pyridoxal phosphate-dependent transferase YP_1010 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_1010 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_1010 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA YP_1011 IPR015943 WD40/YVTN repeat-like-containing domain superfamily YP_1011 IPR011045 Nitrous oxide reductase, N-terminal YP_1011 IPR022528 6-phosphogluconolactonase, YbhE-type YP_1011 IPR019405 Lactonase, 7-bladed beta propeller YP_1012 IPR036412 HAD-like superfamily YP_1012 IPR006379 HAD-superfamily hydrolase, subfamily IIB YP_1012 IPR023214 HAD superfamily YP_1012 IPR000150 Cof family YP_1013 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1013 IPR004606 Molybdenum-pterin binding YP_1013 IPR005116 Transport-associated OB, type 1 YP_1013 IPR011868 Molybdate ABC transporter, ATP-binding protein YP_1013 IPR008995 Molybdate/tungstate binding, C-terminal YP_1013 IPR015852 ABC transporter, molybdenum import, ModC YP_1013 IPR017871 ABC transporter, conserved site YP_1013 IPR003439 ABC transporter-like YP_1013 IPR003593 AAA+ ATPase domain YP_1014 IPR011867 Molybdate ABC transporter, permease protein YP_1014 IPR035906 MetI-like superfamily YP_1014 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1015 IPR005950 Molybdate ABC transporter, substrate-binding protein YP_1016 IPR019702 Multidrug efflux pump accessory protein AcrZ YP_1017 IPR008995 Molybdate/tungstate binding, C-terminal YP_1017 IPR016462 Molybdate-dependent transcriptional regulator ModE YP_1017 IPR003725 Molybdenum-binding protein ModE, N-terminal YP_1017 IPR004606 Molybdenum-pterin binding YP_1017 IPR005116 Transport-associated OB, type 1 YP_1017 IPR000847 Transcription regulator HTH, LysR YP_1017 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1017 IPR036390 Winged helix DNA-binding domain superfamily YP_1018 IPR003593 AAA+ ATPase domain YP_1018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1018 IPR003439 ABC transporter-like YP_1020 IPR005886 UDP-glucose 4-epimerase YP_1020 IPR036291 NAD(P)-binding domain superfamily YP_1020 IPR016040 NAD(P)-binding domain YP_1021 IPR001937 Galactose-1-phosphate uridyl transferase, class I YP_1021 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site YP_1021 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal YP_1021 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal YP_1021 IPR036265 HIT-like superfamily YP_1022 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_1022 IPR036554 GHMP kinase, C-terminal domain superfamily YP_1022 IPR006204 GHMP kinase N-terminal domain YP_1022 IPR006203 GHMP kinase, ATP-binding, conserved site YP_1022 IPR006206 Mevalonate/galactokinase YP_1022 IPR020568 Ribosomal protein S5 domain 2-type fold YP_1022 IPR013750 GHMP kinase, C-terminal domain YP_1022 IPR019539 Galactokinase galactose-binding domain YP_1022 IPR019741 Galactokinase, conserved site YP_1022 IPR022963 Galactokinase, bacterial YP_1022 IPR000705 Galactokinase YP_1025 IPR005952 Phosphoglycerate mutase 1 YP_1025 IPR029033 Histidine phosphatase superfamily YP_1025 IPR013078 Histidine phosphatase superfamily, clade-1 YP_1025 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site YP_1026 IPR006219 DHAP synthase, class 1 YP_1026 IPR006218 DAHP synthetase I/KDSA YP_1026 IPR013785 Aldolase-type TIM barrel YP_1027 IPR023500 Zinc transporter ZitB YP_1027 IPR002524 Cation efflux protein YP_1027 IPR036837 Cation efflux protein, cytoplasmic domain superfamily YP_1027 IPR027469 Cation efflux transmembrane domain superfamily YP_1028 IPR006419 Nicotinamide mononucleotide transporter PnuC YP_1029 IPR036094 Quinolinate synthetase A superfamily YP_1029 IPR003473 Quinolinate synthetase A YP_1029 IPR023513 Quinolinate synthase A, type 1 YP_1030 IPR013026 Tetratricopeptide repeat-containing domain YP_1030 IPR032519 YbgF, trimerisation domain YP_1030 IPR011990 Tetratricopeptide-like helical domain superfamily YP_1030 IPR019734 Tetratricopeptide repeat YP_1030 IPR014162 Cell division coordinator CpoB, C-terminal YP_1030 IPR034706 Cell division coordinator CpoB YP_1031 IPR006664 Outer membrane protein, bacterial YP_1031 IPR039001 Peptidoglycan-associated lipoprotein YP_1031 IPR036737 OmpA-like domain superfamily YP_1031 IPR006690 Outer membrane protein, OmpA-like, conserved site YP_1031 IPR006665 OmpA-like domain YP_1031 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal YP_1032 IPR011042 Six-bladed beta-propeller, TolB-like YP_1032 IPR011659 WD40-like Beta Propeller YP_1032 IPR007195 TolB, N-terminal YP_1032 IPR036752 TolB, N-terminal domain superfamily YP_1032 IPR014167 Tol-Pal system protein TolB YP_1033 IPR014161 Tol-Pal system, TolA YP_1033 IPR014161 Tol-Pal system, TolA YP_1034 IPR003400 Biopolymer transport protein ExbD/TolR YP_1034 IPR014168 Tol-Pal system protein TolR YP_1035 IPR014163 Tol-Pal system, TolQ YP_1035 IPR002898 MotA/TolQ/ExbB proton channel YP_1036 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family YP_1036 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase YP_1036 IPR029069 HotDog domain superfamily YP_1036 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site YP_1036 IPR006683 Thioesterase domain YP_1037 IPR011846 Cyd operon protein YbgE YP_1038 IPR003317 Cytochrome ubiquinol oxidase subunit 2 YP_1039 IPR002585 Cytochrome ubiquinol oxidase subunit 1 YP_1040 IPR003781 CoA-binding YP_1040 IPR036291 NAD(P)-binding domain superfamily YP_1040 IPR005810 Succinyl-CoA ligase, alpha subunit YP_1040 IPR016102 Succinyl-CoA synthetase-like YP_1040 IPR005811 ATP-citrate lyase/succinyl-CoA ligase YP_1040 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site YP_1040 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site YP_1041 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type YP_1041 IPR005811 ATP-citrate lyase/succinyl-CoA ligase YP_1041 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site YP_1041 IPR005809 Succinate--CoA synthetase, beta subunit YP_1041 IPR016102 Succinyl-CoA synthetase-like YP_1041 IPR011761 ATP-grasp fold YP_1041 IPR013815 ATP-grasp fold, subdomain 1 YP_1042 IPR006255 Dihydrolipoamide succinyltransferase YP_1042 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain YP_1042 IPR000089 Biotin/lipoyl attachment YP_1042 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YP_1042 IPR004167 Peripheral subunit-binding domain YP_1042 IPR036625 E3-binding domain superfamily YP_1042 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YP_1042 IPR011053 Single hybrid motif YP_1043 IPR011603 2-oxoglutarate dehydrogenase E1 component YP_1043 IPR001017 Dehydrogenase, E1 component YP_1043 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal YP_1043 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily YP_1043 IPR005475 Transketolase-like, pyrimidine-binding domain YP_1043 IPR029061 Thiamin diphosphate-binding fold YP_1043 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain YP_1044 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal YP_1044 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein YP_1044 IPR009051 Alpha-helical ferredoxin YP_1044 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_1044 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_1044 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YP_1044 IPR036010 2Fe-2S ferredoxin-like superfamily YP_1044 IPR012675 Beta-grasp domain superfamily YP_1045 IPR011281 Succinate dehydrogenase, flavoprotein subunit YP_1045 IPR036188 FAD/NAD(P)-binding domain superfamily YP_1045 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site YP_1045 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily YP_1045 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YP_1045 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily YP_1045 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YP_1045 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YP_1046 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YP_1046 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor YP_1046 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit YP_1047 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YP_1047 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit YP_1047 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit YP_1047 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site YP_1048 IPR010953 Citrate synthase, type I YP_1048 IPR024176 Citrate synthase, bacterial-type YP_1048 IPR019810 Citrate synthase active site YP_1048 IPR016142 Citrate synthase-like, large alpha subdomain YP_1048 IPR016143 Citrate synthase-like, small alpha subdomain YP_1048 IPR002020 Citrate synthase YP_1048 IPR036969 Citrate synthase superfamily YP_1049 IPR000740 GrpE nucleotide exchange factor YP_1049 IPR013805 GrpE nucleotide exchange factor, coiled-coil YP_1049 IPR009012 GrpE nucleotide exchange factor, head YP_1050 IPR002504 NAD kinase YP_1050 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal YP_1050 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily YP_1050 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal YP_1051 IPR003395 RecF/RecN/SMC, N-terminal YP_1051 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1051 IPR004604 DNA recombination/repair protein RecN YP_1052 IPR007450 Lipoprotein SmpA/OmlA YP_1052 IPR037873 BamE-like YP_1052 IPR026592 Outer membrane protein assembly factor BamE YP_1053 IPR005346 RnfH protein YP_1053 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YP_1053 IPR037021 RnfH superfamily YP_1054 IPR005031 Coenzyme Q-binding protein COQ10, START domain YP_1054 IPR023393 START-like domain superfamily YP_1055 IPR020081 SsrA-binding protein, conserved site YP_1055 IPR000037 SsrA-binding protein YP_1055 IPR023620 Small protein B YP_1056 IPR036515 Transposase IS200-like superfamily YP_1056 IPR002686 Transposase IS200-like YP_1057 IPR025166 Integrase, DNA-binding domain YP_1057 IPR038488 Integrase, DNA-binding domain superfamily YP_1057 IPR011010 DNA breaking-rejoining enzyme, catalytic core YP_1057 IPR013762 Integrase-like, catalytic domain superfamily YP_1057 IPR002104 Integrase, catalytic domain YP_1057 IPR010998 Integrase/recombinase, N-terminal YP_1067 IPR038724 Regulatory protein RepA YP_1067 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1070 IPR014056 Addiction module killer protein, predicted YP_1070 IPR009241 Toxin HigB-like YP_1072 IPR036397 Ribonuclease H superfamily YP_1072 IPR006120 Resolvase, HTH domain YP_1072 IPR017894 HTH domain, IS21 transposase-type YP_1072 IPR001584 Integrase, catalytic core YP_1072 IPR012337 Ribonuclease H-like superfamily YP_1073 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_1073 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1073 IPR003593 AAA+ ATPase domain YP_1073 IPR001270 ClpA/B family YP_1073 IPR002611 IstB-like ATP-binding protein YP_1074 IPR009057 Homeobox-like domain superfamily YP_1074 IPR002514 Transposase IS3/IS911family YP_1077 IPR029058 Alpha/Beta hydrolase fold YP_1077 IPR000073 Alpha/beta hydrolase fold-1 YP_1078 IPR010985 Ribbon-helix-helix YP_1078 IPR002145 Ribbon-helix-helix protein, CopG YP_1080 IPR010086 Flavodoxin, long chain YP_1080 IPR001226 Flavodoxin, conserved site YP_1080 IPR029039 Flavoprotein-like superfamily YP_1080 IPR008254 Flavodoxin/nitric oxide synthase YP_1081 IPR036390 Winged helix DNA-binding domain superfamily YP_1081 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1081 IPR002481 Ferric-uptake regulator YP_1083 IPR023614 Porin domain superfamily YP_1083 IPR005318 Outer membrane porin, bacterial YP_1084 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily YP_1084 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain YP_1084 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YP_1084 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YP_1084 IPR022861 Glutamine-tRNA ligase, bacterial YP_1084 IPR004514 Glutamine-tRNA synthetase YP_1084 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YP_1084 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal YP_1084 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily YP_1084 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_1085 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component YP_1085 IPR011055 Duplicated hybrid motif YP_1085 IPR036878 Glucose permease domain IIB YP_1085 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YP_1085 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 YP_1085 IPR003352 Phosphotransferase system, EIIC YP_1085 IPR001996 Phosphotransferase system, IIB component, type 1 YP_1085 IPR013013 Phosphotransferase system, EIIC component, type 1 YP_1086 IPR018321 Glucosamine-6-phosphate isomerase, conserved site YP_1086 IPR037171 NagB/RpiA transferase-like YP_1086 IPR004547 Glucosamine-6-phosphate isomerase YP_1086 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase YP_1087 IPR032466 Metal-dependent hydrolase YP_1087 IPR006680 Amidohydrolase-related YP_1087 IPR011059 Metal-dependent hydrolase, composite domain superfamily YP_1087 IPR003764 N-acetylglucosamine-6-phosphate deacetylase YP_1088 IPR000600 ROK family YP_1088 IPR036390 Winged helix DNA-binding domain superfamily YP_1088 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1088 IPR000835 MarR-type HTH domain YP_1090 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_1090 IPR006426 Asparagine synthase, glutamine-hydrolyzing YP_1090 IPR001962 Asparagine synthase YP_1090 IPR033738 Asparagine synthase, N-terminal domain YP_1090 IPR017932 Glutamine amidotransferase type 2 domain YP_1090 IPR029055 Nucleophile aminohydrolases, N-terminal YP_1092 IPR036188 FAD/NAD(P)-binding domain superfamily YP_1092 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 YP_1092 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YP_1092 IPR002938 FAD-binding domain YP_1093 IPR013848 Methylthiotransferase, N-terminal YP_1093 IPR023404 Radical SAM, alpha/beta horseshoe YP_1093 IPR005839 Methylthiotransferase YP_1093 IPR007197 Radical SAM YP_1093 IPR006638 Elp3/MiaB/NifB YP_1093 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB YP_1093 IPR038135 Methylthiotransferase, N-terminal domain superfamily YP_1093 IPR020612 Methylthiotransferase, conserved site YP_1093 IPR002792 TRAM domain YP_1094 IPR003714 PhoH-like protein YP_1094 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1095 IPR020549 Endoribonuclease YbeY, conserved site YP_1095 IPR002036 Endoribonuclease YbeY YP_1095 IPR023091 Metalloprotease catalytic domain superfamily, predicted YP_1096 IPR005170 Transporter-associated domain YP_1096 IPR000644 CBS domain YP_1096 IPR036318 FAD-binding, type PCMH-like superfamily YP_1096 IPR016169 FAD-binding, type PCMH, subdomain 2 YP_1097 IPR003010 Carbon-nitrogen hydrolase YP_1097 IPR036526 Carbon-nitrogen hydrolase superfamily YP_1097 IPR004563 Apolipoprotein N-acyltransferase YP_1098 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_1099 IPR035906 MetI-like superfamily YP_1099 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1099 IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ YP_1099 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YP_1100 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YP_1100 IPR035906 MetI-like superfamily YP_1100 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM YP_1100 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1101 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YP_1101 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1101 IPR017871 ABC transporter, conserved site YP_1101 IPR003439 ABC transporter-like YP_1101 IPR003593 AAA+ ATPase domain YP_1102 IPR009912 Zinc-ribbon containing domain YP_1103 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YP_1103 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YP_1103 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YP_1103 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_1103 IPR002300 Aminoacyl-tRNA synthetase, class Ia YP_1103 IPR002302 Leucine-tRNA ligase YP_1103 IPR025709 Leucyl-tRNA synthetase, editing domain YP_1103 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YP_1104 IPR007485 LPS-assembly lipoprotein LptE YP_1105 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1105 IPR005790 DNA polymerase III, delta subunit YP_1105 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YP_1105 IPR032780 DNA polymerase III subunit delta, C-terminal YP_1105 IPR010372 DNA polymerase III delta, N-terminal YP_1106 IPR004821 Cytidyltransferase-like domain YP_1106 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase YP_1106 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_1107 IPR004394 Protein Iojap/ribosomal silencing factor RsfS YP_1108 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YP_1108 IPR029028 Alpha/beta knot methyltransferases YP_1108 IPR003742 RNA methyltransferase RlmH YP_1109 IPR001460 Penicillin-binding protein, transpeptidase YP_1109 IPR017790 Penicillin-binding protein 2 YP_1109 IPR005311 Penicillin-binding protein, dimerisation domain YP_1109 IPR036138 Penicillin-binding protein, dimerisation domain superfamily YP_1109 IPR012338 Beta-lactamase/transpeptidase-like YP_1110 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site YP_1110 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB YP_1110 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA YP_1111 IPR036908 RlpA-like domain superfamily YP_1111 IPR009009 RlpA-like protein, double-psi beta-barrel domain YP_1111 IPR036680 Sporulation-like domain superfamily YP_1111 IPR007730 Sporulation-like domain YP_1111 IPR012997 Rare lipoprotein A YP_1111 IPR034718 Endolytic peptidoglycan transglycosylase RlpA YP_1112 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YP_1112 IPR012338 Beta-lactamase/transpeptidase-like YP_1112 IPR015956 Penicillin-binding protein, C-terminal domain superfamily YP_1112 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily YP_1112 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YP_1112 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YP_1113 IPR007454 Uncharacterised protein family UPF0250 YP_1113 IPR027471 YbeD-like domain superfamily YP_1114 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain YP_1114 IPR020605 Octanoyltransferase, conserved site YP_1114 IPR000544 Octanoyltransferase YP_1115 IPR003698 Lipoyl synthase YP_1115 IPR007197 Radical SAM YP_1115 IPR006638 Elp3/MiaB/NifB YP_1115 IPR013785 Aldolase-type TIM barrel YP_1115 IPR031691 Lipoyl synthase, N-terminal YP_1117 IPR006312 Sec-independent protein translocase protein TatA/E YP_1117 IPR024905 Sec-independent protein translocase protein TatE YP_1117 IPR003369 Sec-independent protein translocase protein TatA/B/E YP_1118 IPR003691 Putative fluoride ion transporter CrcB YP_1120 IPR019844 Cold-shock (CSD) domain YP_1120 IPR011129 Cold shock domain YP_1120 IPR012156 Cold shock, CspA YP_1120 IPR012340 Nucleic acid-binding, OB-fold YP_1120 IPR002059 Cold-shock protein, DNA-binding YP_1121 IPR012340 Nucleic acid-binding, OB-fold YP_1121 IPR002059 Cold-shock protein, DNA-binding YP_1121 IPR019844 Cold-shock (CSD) domain YP_1121 IPR012156 Cold shock, CspA YP_1121 IPR011129 Cold shock domain YP_1122 IPR000792 Transcription regulator LuxR, C-terminal YP_1122 IPR016032 Signal transduction response regulator, C-terminal effector YP_1127 IPR003439 ABC transporter-like YP_1127 IPR039421 Type I protein exporter YP_1127 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1127 IPR017871 ABC transporter, conserved site YP_1127 IPR011527 ABC transporter type 1, transmembrane domain YP_1127 IPR003593 AAA+ ATPase domain YP_1127 IPR036640 ABC transporter type 1, transmembrane domain superfamily YP_1128 IPR023770 5-deoxy-glucuronate isomerase, Bacilli YP_1128 IPR021120 KduI/IolB isomerase YP_1128 IPR014710 RmlC-like jelly roll fold YP_1128 IPR024203 5-deoxy-glucuronate isomerase, IolB YP_1128 IPR011051 RmlC-like cupin domain superfamily YP_1129 IPR030823 IolE/MocC family YP_1129 IPR013022 Xylose isomerase-like, TIM barrel domain YP_1129 IPR036237 Xylose isomerase-like superfamily YP_1130 IPR029056 Ribokinase-like YP_1130 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YP_1130 IPR011611 Carbohydrate kinase PfkB YP_1130 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily YP_1130 IPR022841 5-dehydro-2-deoxygluconokinase, Firmicutes YP_1130 IPR030830 5-Dehydro-2-deoxygluconokinase YP_1131 IPR000683 Oxidoreductase, N-terminal YP_1131 IPR036291 NAD(P)-binding domain superfamily YP_1131 IPR030827 Inositol 2-dehydrogenase YP_1131 IPR004104 Oxidoreductase, C-terminal YP_1132 IPR001851 ABC transporter, permease YP_1133 IPR003439 ABC transporter-like YP_1133 IPR003593 AAA+ ATPase domain YP_1133 IPR017871 ABC transporter, conserved site YP_1133 IPR015861 ABC transporter, ribose import, RbsA YP_1133 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1134 IPR028082 Periplasmic binding protein-like I YP_1134 IPR025997 Periplasmic binding protein YP_1136 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase YP_1136 IPR023757 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, Firmicutes YP_1136 IPR000399 TPP-binding enzyme, conserved site YP_1136 IPR029035 DHS-like NAD/FAD-binding domain superfamily YP_1136 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_1136 IPR029061 Thiamin diphosphate-binding fold YP_1136 IPR012000 Thiamine pyrophosphate enzyme, central domain YP_1136 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YP_1137 IPR010061 Methylmalonate-semialdehyde dehydrogenase YP_1137 IPR016162 Aldehyde dehydrogenase, N-terminal YP_1137 IPR016160 Aldehyde dehydrogenase, cysteine active site YP_1137 IPR016163 Aldehyde dehydrogenase, C-terminal YP_1137 IPR016161 Aldehyde/histidinol dehydrogenase YP_1137 IPR015590 Aldehyde dehydrogenase domain YP_1141 IPR002890 Macroglobulin domain YP_1141 IPR001599 Alpha-2-macroglobulin YP_1141 IPR041203 Bacterial Alpha-2-macroglobulin, MG5 domain YP_1141 IPR041462 Bacterial Alpha-2-macroglobulin, MG6 domain YP_1141 IPR021868 Alpha-2-macroglobulin MG3 domain YP_1141 IPR011625 Alpha-2-macroglobulin, bait region domain YP_1141 IPR041246 Bacterial alpha-2-macroglobulin MG10 domain YP_1141 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid YP_1142 IPR001460 Penicillin-binding protein, transpeptidase YP_1142 IPR023346 Lysozyme-like domain superfamily YP_1142 IPR001264 Glycosyl transferase, family 51 YP_1142 IPR012338 Beta-lactamase/transpeptidase-like YP_1142 IPR011815 Penicillin-binding protein 1C YP_1142 IPR009647 Penicillin-binding, C-terminal YP_1142 IPR036950 Penicillin binding protein transglycosylase domain YP_1143 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_1143 IPR038722 Ner, winged helix-turn-helix DNA-binding domain YP_1150 IPR036624 Hcp1-like superfamily YP_1150 IPR008514 Type VI secretion system effector, Hcp YP_1153 IPR036709 Autotransporter beta-domain superfamily YP_1153 IPR006315 Outer membrane autotransporter barrel YP_1153 IPR024973 ESPR domain YP_1153 IPR011050 Pectin lyase fold/virulence factor YP_1153 IPR004899 Pertactin, central region YP_1153 IPR012332 P22 tailspike-like, C-terminal domain superfamily YP_1153 IPR005546 Autotransporter beta-domain YP_1153 IPR003991 Pertactin virulence factor family YP_1153 IPR030930 Adhesin of bacterial autotransporter system YP_1156 IPR001207 Transposase, mutator type YP_1162 IPR020471 Aldo/keto reductase YP_1162 IPR023210 NADP-dependent oxidoreductase domain YP_1162 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_1162 IPR018170 Aldo/keto reductase, conserved site YP_1163 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_1163 IPR023210 NADP-dependent oxidoreductase domain YP_1163 IPR020471 Aldo/keto reductase YP_1164 IPR005119 LysR, substrate-binding YP_1164 IPR000847 Transcription regulator HTH, LysR YP_1164 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1164 IPR036390 Winged helix DNA-binding domain superfamily YP_1165 IPR036397 Ribonuclease H superfamily YP_1165 IPR012337 Ribonuclease H-like superfamily YP_1165 IPR006120 Resolvase, HTH domain YP_1165 IPR001584 Integrase, catalytic core YP_1165 IPR017894 HTH domain, IS21 transposase-type YP_1166 IPR002611 IstB-like ATP-binding protein YP_1166 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1166 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_1166 IPR001270 ClpA/B family YP_1166 IPR003593 AAA+ ATPase domain YP_1168 IPR036515 Transposase IS200-like superfamily YP_1168 IPR002686 Transposase IS200-like YP_1171 IPR005586 ABC-type transport auxiliary lipoprotein component YP_1172 IPR003399 Mce/MlaD YP_1173 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type YP_1173 IPR007498 Intermembrane transport protein PqiA-like YP_1174 IPR032781 ABC-transporter extension domain YP_1174 IPR032524 ABC transporter Uup, C-terminal YP_1174 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1174 IPR017871 ABC transporter, conserved site YP_1174 IPR003439 ABC transporter-like YP_1174 IPR003593 AAA+ ATPase domain YP_1174 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily YP_1175 IPR004114 THUMP domain YP_1175 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1175 IPR017244 Ribosomal RNA large subunit methyltransferase K/L YP_1175 IPR019614 S-adenosylmethionine-dependent methyltransferase YP_1175 IPR000241 Putative RNA methylase domain YP_1175 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YP_1176 IPR036010 2Fe-2S ferredoxin-like superfamily YP_1176 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YP_1176 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YP_1176 IPR012675 Beta-grasp domain superfamily YP_1176 IPR005302 Molybdenum cofactor sulfurase, C-terminal YP_1176 IPR005303 MOSC, N-terminal beta barrel YP_1176 IPR011037 Pyruvate kinase-like, insert domain superfamily YP_1177 IPR009809 Cell division protein ZapC YP_1178 IPR001295 Dihydroorotate dehydrogenase, conserved site YP_1178 IPR005719 Dihydroorotate dehydrogenase, class 2 YP_1178 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 YP_1178 IPR005720 Dihydroorotate dehydrogenase domain YP_1178 IPR013785 Aldolase-type TIM barrel YP_1179 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase YP_1179 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold YP_1179 IPR042097 Aminopeptidase N-like , N-terminal YP_1179 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily YP_1179 IPR014782 Peptidase M1, membrane alanine aminopeptidase YP_1179 IPR012779 Peptidase M1, alanyl aminopeptidase YP_1179 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal YP_1179 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily YP_1179 IPR027268 Peptidase M4/M1, CTD superfamily YP_1180 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase YP_1180 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal YP_1180 IPR007229 Nicotinate phosphoribosyltransferase family YP_1180 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain YP_1180 IPR006406 Nicotinate phosphoribosyltransferase YP_1181 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YP_1181 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb YP_1181 IPR004522 Asparagine-tRNA ligase YP_1181 IPR006195 Aminoacyl-tRNA synthetase, class II YP_1181 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YP_1181 IPR012340 Nucleic acid-binding, OB-fold YP_1182 IPR001897 Porin, gammaproteobacterial YP_1182 IPR001702 Porin, Gram-negative type YP_1182 IPR023614 Porin domain superfamily YP_1182 IPR033900 Porin domain, Gram-negative type YP_1182 IPR013793 Porin, Gram-negative type, conserved site YP_1183 IPR000796 Aspartate/other aminotransferase YP_1183 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_1183 IPR015424 Pyridoxal phosphate-dependent transferase YP_1183 IPR004839 Aminotransferase, class I/classII YP_1183 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YP_1183 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_1184 IPR001279 Metallo-beta-lactamase YP_1184 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_1185 IPR006311 Twin-arginine translocation pathway, signal sequence YP_1185 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily YP_1185 IPR010275 Protein of unknown function DUF882 YP_1186 IPR036365 PGBD-like superfamily YP_1186 IPR038063 L,D-transpeptidase catalytic domain-like YP_1186 IPR005490 L,D-transpeptidase catalytic domain YP_1186 IPR002477 Peptidoglycan binding-like YP_1187 IPR002686 Transposase IS200-like YP_1187 IPR036515 Transposase IS200-like superfamily YP_1188 IPR012090 Chromosome partition protein MukB YP_1188 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1188 IPR032520 MukB, hinge domain YP_1188 IPR007406 MukB, N-terminal domain YP_1189 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE YP_1189 IPR042037 MukE, C-terminal domain YP_1189 IPR042038 MukE, N-terminal domain YP_1190 IPR033440 Chromosome partition protein MukF, middle domain YP_1190 IPR036141 MukF, middle domain superfamily YP_1190 IPR038198 MukF, C-terminal domain superfamily YP_1190 IPR033441 Chromosome partition protein MukF, C-terminal domain YP_1190 IPR005582 Chromosome partition protein MukF YP_1190 IPR010916 TonB box, conserved site YP_1190 IPR033439 Chromosome partition protein MukF, winged-helix domain YP_1190 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1190 IPR036390 Winged helix DNA-binding domain superfamily YP_1191 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase YP_1191 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1192 IPR002575 Aminoglycoside phosphotransferase YP_1192 IPR011009 Protein kinase-like domain superfamily YP_1193 IPR029044 Nucleotide-diphospho-sugar transferases YP_1193 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_1193 IPR003329 Acylneuraminate cytidylyltransferase YP_1194 IPR005651 Trm112-like YP_1195 IPR012340 Nucleic acid-binding, OB-fold YP_1195 IPR019844 Cold-shock (CSD) domain YP_1195 IPR011129 Cold shock domain YP_1195 IPR012156 Cold shock, CspA YP_1195 IPR002059 Cold-shock protein, DNA-binding YP_1196 IPR009770 Domain of unknown function DUF1338 YP_1197 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1197 IPR003758 Tetraacyldisaccharide 4'-kinase YP_1198 IPR011527 ABC transporter type 1, transmembrane domain YP_1198 IPR036640 ABC transporter type 1, transmembrane domain superfamily YP_1198 IPR003439 ABC transporter-like YP_1198 IPR017871 ABC transporter, conserved site YP_1198 IPR011917 ABC transporter, lipid A export, MsbA YP_1198 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1198 IPR039421 Type I protein exporter YP_1198 IPR003593 AAA+ ATPase domain YP_1199 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_1199 IPR004797 Competence protein ComEC/Rec2 YP_1199 IPR001279 Metallo-beta-lactamase YP_1199 IPR035681 ComA-like, MBL domain YP_1199 IPR004477 ComEC/Rec2-related protein YP_1200 IPR005685 Integration host factor, beta subunit YP_1200 IPR000119 Histone-like DNA-binding protein YP_1200 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily YP_1200 IPR020816 Histone-like DNA-binding protein, conserved site YP_1201 IPR012340 Nucleic acid-binding, OB-fold YP_1201 IPR022967 RNA-binding domain, S1 YP_1201 IPR003029 S1 domain YP_1201 IPR000110 Ribosomal protein S1 YP_1202 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1202 IPR011994 Cytidylate kinase domain YP_1202 IPR003136 Cytidylate kinase YP_1203 IPR001986 Enolpyruvate transferase domain YP_1203 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase YP_1203 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site YP_1203 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YP_1203 IPR036968 Enolpyruvate transferase domain superfamily YP_1204 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_1204 IPR015424 Pyridoxal phosphate-dependent transferase YP_1204 IPR022278 Phosphoserine aminotransferase YP_1204 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YP_1204 IPR000192 Aminotransferase class V domain YP_1204 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_1206 IPR008640 Head domain of trimeric autotransporter adhesin YP_1206 IPR008635 Coiled stalk of trimeric autotransporter adhesin YP_1206 IPR005594 YadA-like, C-terminal YP_1206 IPR024973 ESPR domain YP_1206 IPR008635 Coiled stalk of trimeric autotransporter adhesin YP_1206 IPR008640 Head domain of trimeric autotransporter adhesin YP_1206 IPR005594 YadA-like, C-terminal YP_1206 IPR011049 Serralysin-like metalloprotease, C-terminal YP_1206 IPR024973 ESPR domain YP_1206 IPR011049 Serralysin-like metalloprotease, C-terminal YP_1207 IPR040919 Asparaginase/glutaminase, C-terminal YP_1207 IPR027473 L-asparaginase, C-terminal YP_1207 IPR027474 L-asparaginase, N-terminal YP_1207 IPR037152 L-asparaginase, N-terminal domain superfamily YP_1207 IPR020827 Asparaginase/glutaminase, active site 1 YP_1207 IPR006034 Asparaginase/glutaminase-like YP_1207 IPR036152 Asparaginase/glutaminase-like superfamily YP_1207 IPR027475 Asparaginase/glutaminase, active site 2 YP_1207 IPR004550 L-asparaginase, type II YP_1208 IPR041080 YcaO cyclodehydratase, C-terminal YP_1208 IPR003776 YcaO-like domain YP_1209 IPR023999 Formate transporter FocA, putative YP_1209 IPR024002 Formate/nitrite transporter, conserved site YP_1209 IPR000292 Formate/nitrite transporter YP_1209 IPR023271 Aquaporin-like YP_1210 IPR001150 Glycine radical domain YP_1210 IPR005949 Formate acetyltransferase YP_1210 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YP_1210 IPR004184 Pyruvate formate lyase domain YP_1212 IPR007197 Radical SAM YP_1212 IPR001989 Radical-activating enzyme, conserved site YP_1212 IPR012838 Pyruvate formate-lyase 1 activating enzyme YP_1212 IPR012839 Organic radical enzyme activase YP_1212 IPR034457 Organic radical-activating enzymes YP_1212 IPR013785 Aldolase-type TIM barrel YP_1212 IPR034465 Pyruvate formate-lyase activase YP_1213 IPR036259 MFS transporter superfamily YP_1213 IPR020846 Major facilitator superfamily domain YP_1213 IPR023745 MSF-type transporter, YcaD YP_1213 IPR011701 Major facilitator superfamily YP_1214 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) YP_1214 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm YP_1214 IPR033729 Serine-tRNA ligase catalytic core domain YP_1214 IPR002317 Serine-tRNA ligase, type1 YP_1214 IPR015866 Serine-tRNA synthetase, type1, N-terminal YP_1214 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily YP_1214 IPR006195 Aminoacyl-tRNA synthetase, class II YP_1215 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1215 IPR003593 AAA+ ATPase domain YP_1215 IPR021886 MgsA AAA+ ATPase C-terminal YP_1215 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YP_1215 IPR003959 ATPase, AAA-type, core YP_1215 IPR032423 AAA C-terminal domain YP_1216 IPR029046 Lipoprotein localisation LolA/LolB/LppX YP_1216 IPR004564 Outer membrane lipoprotein carrier protein LolA-like YP_1216 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria YP_1217 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1217 IPR041027 FtsK alpha domain YP_1217 IPR018541 FtsK gamma domain YP_1217 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1217 IPR025199 DNA translocase FtsK, 4TM region YP_1217 IPR036390 Winged helix DNA-binding domain superfamily YP_1217 IPR002543 FtsK domain YP_1218 IPR036390 Winged helix DNA-binding domain superfamily YP_1218 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YP_1218 IPR011991 ArsR-like helix-turn-helix domain YP_1218 IPR000485 AsnC-type HTH domain YP_1218 IPR011008 Dimeric alpha-beta barrel YP_1218 IPR019888 Transcription regulator AsnC-type YP_1218 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YP_1218 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1219 IPR036188 FAD/NAD(P)-binding domain superfamily YP_1219 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site YP_1219 IPR005982 Thioredoxin reductase YP_1219 IPR023753 FAD/NAD(P)-binding domain YP_1220 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1220 IPR017871 ABC transporter, conserved site YP_1220 IPR036640 ABC transporter type 1, transmembrane domain superfamily YP_1220 IPR003593 AAA+ ATPase domain YP_1220 IPR011527 ABC transporter type 1, transmembrane domain YP_1220 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD YP_1220 IPR039421 Type I protein exporter YP_1220 IPR003439 ABC transporter-like YP_1221 IPR011527 ABC transporter type 1, transmembrane domain YP_1221 IPR017871 ABC transporter, conserved site YP_1221 IPR003439 ABC transporter-like YP_1221 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC YP_1221 IPR036640 ABC transporter type 1, transmembrane domain superfamily YP_1221 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1221 IPR003593 AAA+ ATPase domain YP_1222 IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal YP_1222 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase YP_1222 IPR016181 Acyl-CoA N-acyltransferase YP_1223 IPR004368 Translation initiation factor IF-1 YP_1223 IPR006196 RNA-binding domain, S1, IF1 type YP_1223 IPR012340 Nucleic acid-binding, OB-fold YP_1223 IPR022967 RNA-binding domain, S1 YP_1224 IPR036515 Transposase IS200-like superfamily YP_1224 IPR002686 Transposase IS200-like YP_1225 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA YP_1225 IPR003959 ATPase, AAA-type, core YP_1225 IPR003593 AAA+ ATPase domain YP_1225 IPR028299 ClpA/B, conserved site 2 YP_1225 IPR018368 ClpA/B, conserved site 1 YP_1225 IPR001270 ClpA/B family YP_1225 IPR004176 Clp, N-terminal YP_1225 IPR019489 Clp ATPase, C-terminal YP_1225 IPR036628 Clp, N-terminal domain superfamily YP_1225 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1225 IPR041546 ClpA/ClpB, AAA lid domain YP_1226 IPR022935 ATP-dependent Clp protease adaptor protein ClpS YP_1226 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YP_1226 IPR003769 Adaptor protein ClpS, core YP_1228 IPR012340 Nucleic acid-binding, OB-fold YP_1228 IPR011129 Cold shock domain YP_1228 IPR019844 Cold-shock (CSD) domain YP_1228 IPR012751 CspD, cold shock YP_1228 IPR012156 Cold shock, CspA YP_1228 IPR002059 Cold-shock protein, DNA-binding YP_1229 IPR003838 ABC transporter permease protein domain YP_1229 IPR003593 AAA+ ATPase domain YP_1229 IPR017911 ABC transporter, macrolide export, ATP-binding domain YP_1229 IPR017871 ABC transporter, conserved site YP_1229 IPR025857 MacB-like periplasmic core domain YP_1229 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1229 IPR003439 ABC transporter-like YP_1230 IPR030190 Macrolide export protein MacA YP_1230 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_1230 IPR006143 RND efflux pump, membrane fusion protein YP_1232 IPR007488 Protein of unknown function DUF535 YP_1233 IPR034139 OLD protein-like, TOPRIM domain YP_1233 IPR022602 Protein of unknown function DUF2813 YP_1233 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1233 IPR006171 TOPRIM domain YP_1234 IPR005642 Lysine exporter LysO YP_1235 IPR016099 Prismane-like, alpha/beta-sandwich YP_1235 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase YP_1235 IPR011254 Prismane-like superfamily YP_1235 IPR016100 Prismane, alpha-bundle YP_1235 IPR010048 Hydroxylamine reductase YP_1236 IPR017927 FAD-binding domain, ferredoxin reductase-type YP_1236 IPR000951 Phthalate dioxygenase reductase YP_1236 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_1236 IPR001433 Oxidoreductase FAD/NAD(P)-binding YP_1236 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YP_1236 IPR012675 Beta-grasp domain superfamily YP_1236 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YP_1236 IPR017938 Riboflavin synthase-like beta-barrel YP_1236 IPR036010 2Fe-2S ferredoxin-like superfamily YP_1237 IPR000399 TPP-binding enzyme, conserved site YP_1237 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YP_1237 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_1237 IPR012000 Thiamine pyrophosphate enzyme, central domain YP_1237 IPR029035 DHS-like NAD/FAD-binding domain superfamily YP_1237 IPR029061 Thiamin diphosphate-binding fold YP_1239 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase YP_1239 IPR015424 Pyridoxal phosphate-dependent transferase YP_1239 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_1239 IPR023603 Threonine aldolase YP_1239 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_1240 IPR021295 Protein of unknown function DUF2867 YP_1240 IPR016040 NAD(P)-binding domain YP_1240 IPR036291 NAD(P)-binding domain superfamily YP_1241 IPR001509 NAD-dependent epimerase/dehydratase YP_1241 IPR036291 NAD(P)-binding domain superfamily YP_1242 IPR024289 Domain of unknown function DUF3828 YP_1243 IPR002701 Chorismate mutase II, prokaryotic-type YP_1243 IPR036263 Chorismate mutase type II superfamily YP_1243 IPR008240 Chorismate mutase, periplasmic YP_1244 IPR003439 ABC transporter-like YP_1244 IPR017871 ABC transporter, conserved site YP_1244 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1244 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YP_1244 IPR003593 AAA+ ATPase domain YP_1245 IPR001320 Ionotropic glutamate receptor YP_1245 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_1245 IPR018313 Solute-binding protein family 3, conserved site YP_1245 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YP_1246 IPR035906 MetI-like superfamily YP_1246 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1246 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YP_1247 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1247 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YP_1247 IPR035906 MetI-like superfamily YP_1248 IPR000620 EamA domain YP_1249 IPR016935 Opine metallophore dehydrogenase YP_1249 IPR036291 NAD(P)-binding domain superfamily YP_1250 IPR036291 NAD(P)-binding domain superfamily YP_1250 IPR004298 Nicotianamine synthase YP_1251 IPR003593 AAA+ ATPase domain YP_1251 IPR003439 ABC transporter-like YP_1251 IPR017871 ABC transporter, conserved site YP_1251 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1252 IPR037294 ABC transporter, BtuC-like YP_1252 IPR000522 ABC transporter, permease protein, BtuC-like YP_1256 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YP_1256 IPR018313 Solute-binding protein family 3, conserved site YP_1256 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_1256 IPR001320 Ionotropic glutamate receptor YP_1257 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1257 IPR030390 RNA methyltransferase TrmA, active site YP_1257 IPR030391 RNA methyltransferase TrmA, conserved site YP_1257 IPR010280 (Uracil-5)-methyltransferase family YP_1257 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC YP_1258 IPR019703 Protein of unknown function DUF2593 YP_1259 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1259 IPR035906 MetI-like superfamily YP_1260 IPR035906 MetI-like superfamily YP_1260 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1261 IPR013611 Transport-associated OB, type 2 YP_1261 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YP_1261 IPR003593 AAA+ ATPase domain YP_1261 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1261 IPR017871 ABC transporter, conserved site YP_1261 IPR003439 ABC transporter-like YP_1261 IPR008995 Molybdate/tungstate binding, C-terminal YP_1262 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein YP_1262 IPR006059 Bacterial extracellular solute-binding protein YP_1263 IPR019660 Putative sensory transduction regulator YbjN YP_1264 IPR010815 Protein of unknown function DUF1418 YP_1265 IPR011767 Glutaredoxin active site YP_1265 IPR002109 Glutaredoxin YP_1265 IPR014025 Glutaredoxin subgroup YP_1265 IPR011902 Glutaredoxin, GrxA YP_1265 IPR036249 Thioredoxin-like superfamily YP_1266 IPR006512 YidE/YbjL duplication YP_1266 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YP_1266 IPR006037 Regulator of K+ conductance, C-terminal YP_1266 IPR023017 Transport protein YbjL, putative YP_1268 IPR033879 Undecaprenyl-diphosphatase YP_1268 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YP_1268 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YP_1269 IPR028581 Deoxyribose-phosphate aldolase type I YP_1269 IPR011343 Deoxyribose-phosphate aldolase YP_1269 IPR002915 DeoC/FbaB/ lacD aldolase YP_1269 IPR013785 Aldolase-type TIM barrel YP_1270 IPR001034 DeoR-type HTH domain YP_1270 IPR037171 NagB/RpiA transferase-like YP_1270 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YP_1270 IPR014036 DeoR C-terminal sensor domain YP_1271 IPR004694 Hydroxy amino acid transporter YP_1272 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YP_1272 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily YP_1272 IPR015956 Penicillin-binding protein, C-terminal domain superfamily YP_1272 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YP_1272 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YP_1272 IPR012338 Beta-lactamase/transpeptidase-like YP_1273 IPR035906 MetI-like superfamily YP_1273 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1274 IPR018449 NIL domain YP_1274 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain YP_1274 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal YP_1274 IPR017871 ABC transporter, conserved site YP_1274 IPR003439 ABC transporter-like YP_1274 IPR026253 Methionine import ATP-binding protein MetN YP_1274 IPR003593 AAA+ ATPase domain YP_1274 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1275 IPR004872 Lipoprotein NlpA family YP_1277 IPR036412 HAD-like superfamily YP_1277 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like YP_1277 IPR023214 HAD superfamily YP_1278 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YP_1278 IPR004045 Glutathione S-transferase, N-terminal YP_1278 IPR004046 Glutathione S-transferase, C-terminal YP_1278 IPR010987 Glutathione S-transferase, C-terminal-like YP_1278 IPR036249 Thioredoxin-like superfamily YP_1279 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_1279 IPR010917 TonB-dependent receptor, conserved site YP_1279 IPR000531 TonB-dependent receptor-like, beta-barrel YP_1279 IPR037066 TonB-dependent receptor, plug domain superfamily YP_1279 IPR012910 TonB-dependent receptor, plug domain YP_1279 IPR039426 Vitamin B12 transporter BtuB-like YP_1279 IPR010916 TonB box, conserved site YP_1280 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1280 IPR015863 ABC transporter, hemin import, HmuV YP_1280 IPR003439 ABC transporter-like YP_1280 IPR003593 AAA+ ATPase domain YP_1281 IPR037294 ABC transporter, BtuC-like YP_1281 IPR000522 ABC transporter, permease protein, BtuC-like YP_1283 IPR004841 Amino acid permease/ SLC12A domain YP_1283 IPR004840 Amino acid permease, conserved site YP_1284 IPR005119 LysR, substrate-binding YP_1284 IPR000847 Transcription regulator HTH, LysR YP_1284 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1284 IPR036390 Winged helix DNA-binding domain superfamily YP_1285 IPR018383 Uncharacterised protein family UPF0324, prokaryote YP_1285 IPR004630 Uncharacterised protein family UPF0324, bacteria YP_1286 IPR036237 Xylose isomerase-like superfamily YP_1286 IPR001719 AP endonuclease 2 YP_1286 IPR018246 AP endonuclease 2, zinc binding site YP_1286 IPR013022 Xylose isomerase-like, TIM barrel domain YP_1287 IPR037224 PapC, N-terminal domain superfamily YP_1287 IPR025885 PapC, N-terminal domain YP_1287 IPR025949 PapC-like, C-terminal domain YP_1287 IPR042186 Outer membrane usher protein FimD, plug domain YP_1287 IPR018030 Fimbrial membrane usher, conserved site YP_1287 IPR000015 Outer membrane usher protein YP_1288 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_1288 IPR016148 Pili assembly chaperone, C-terminal YP_1288 IPR018046 Pili assembly chaperone, conserved site YP_1288 IPR008962 PapD-like superfamily YP_1288 IPR016147 Pili assembly chaperone, N-terminal YP_1288 IPR001829 Pili assembly chaperone, bacterial YP_1288 IPR013783 Immunoglobulin-like fold YP_1290 IPR035182 Protein of unknown function PsaF YP_1291 IPR001867 OmpR/PhoB-type DNA-binding domain YP_1291 IPR016032 Signal transduction response regulator, C-terminal effector YP_1291 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1292 IPR036095 PTS system IIB component-like superfamily YP_1292 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YP_1292 IPR013014 Phosphotransferase system, EIIC component, type 2 YP_1292 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YP_1292 IPR013011 Phosphotransferase system, EIIB component, type 2 YP_1292 IPR006327 Phosphotransferase system, fructose IIC component YP_1292 IPR003352 Phosphotransferase system, EIIC YP_1293 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YP_1293 IPR022463 Fructose 1-phosphate kinase YP_1293 IPR029056 Ribokinase-like YP_1293 IPR011611 Carbohydrate kinase PfkB YP_1293 IPR017583 Tagatose/fructose phosphokinase YP_1294 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YP_1294 IPR035895 HPr-like superfamily YP_1294 IPR000032 Phosphocarrier protein HPr-like YP_1294 IPR002178 PTS EIIA type-2 domain YP_1294 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YP_1294 IPR016152 Phosphotransferase/anion transporter YP_1295 IPR015797 NUDIX hydrolase-like domain superfamily YP_1295 IPR000086 NUDIX hydrolase domain YP_1295 IPR020476 NUDIX hydrolase YP_1295 IPR020084 NUDIX hydrolase, conserved site YP_1296 IPR001851 ABC transporter, permease YP_1297 IPR015861 ABC transporter, ribose import, RbsA YP_1297 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1297 IPR017871 ABC transporter, conserved site YP_1297 IPR003593 AAA+ ATPase domain YP_1297 IPR003439 ABC transporter-like YP_1299 IPR004788 Ribose 5-phosphate isomerase, type A YP_1299 IPR037171 NagB/RpiA transferase-like YP_1299 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup YP_1300 IPR018483 Carbohydrate kinase, FGGY, conserved site YP_1300 IPR018484 Carbohydrate kinase, FGGY, N-terminal YP_1300 IPR018485 Carbohydrate kinase, FGGY, C-terminal YP_1300 IPR006000 Xylulokinase YP_1300 IPR000577 Carbohydrate kinase, FGGY YP_1301 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YP_1301 IPR015590 Aldehyde dehydrogenase domain YP_1301 IPR010102 Succinate semialdehyde dehydrogenase YP_1301 IPR016162 Aldehyde dehydrogenase, N-terminal YP_1301 IPR016163 Aldehyde dehydrogenase, C-terminal YP_1301 IPR016160 Aldehyde dehydrogenase, cysteine active site YP_1301 IPR016161 Aldehyde/histidinol dehydrogenase YP_1303 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_1303 IPR029009 Allosteric substrate binding domain superfamily YP_1303 IPR002912 ACT domain YP_1303 IPR006236 D-3-phosphoglycerate dehydrogenase YP_1303 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YP_1303 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YP_1303 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YP_1303 IPR036291 NAD(P)-binding domain superfamily YP_1304 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1304 IPR020904 Short-chain dehydrogenase/reductase, conserved site YP_1304 IPR036291 NAD(P)-binding domain superfamily YP_1306 IPR013059 Tryptophan/tyrosine transporter YP_1306 IPR018227 Amino acid/polyamine transporter 2 YP_1307 IPR020599 Translation elongation factor P/YeiP YP_1307 IPR014722 Ribosomal protein L2, domain 2 YP_1307 IPR015365 Elongation factor P, C-terminal YP_1307 IPR008991 Translation protein SH3-like domain superfamily YP_1307 IPR013185 Translation elongation factor, KOW-like YP_1307 IPR013852 Translation elongation factor P/YeiP, conserved site YP_1307 IPR012340 Nucleic acid-binding, OB-fold YP_1307 IPR001059 Translation elongation factor P/YeiP, central YP_1307 IPR011897 Translation elongation factor P-like, YeiP YP_1308 IPR004628 Mannonate dehydratase YP_1308 IPR036237 Xylose isomerase-like superfamily YP_1309 IPR000669 Mannitol dehydrogenase YP_1309 IPR013118 Mannitol dehydrogenase, C-terminal YP_1309 IPR023027 Mannitol dehydrogenase, conserved site YP_1309 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YP_1309 IPR036291 NAD(P)-binding domain superfamily YP_1309 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YP_1309 IPR013131 Mannitol dehydrogenase, N-terminal YP_1310 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1310 IPR011711 GntR, C-terminal YP_1310 IPR036390 Winged helix DNA-binding domain superfamily YP_1310 IPR000524 Transcription regulator HTH, GntR YP_1310 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_1312 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YP_1312 IPR003495 CobW/HypB/UreG, nucleotide-binding domain YP_1312 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1313 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YP_1313 IPR032908 Lipid A 1-diphosphate synthase YP_1313 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YP_1314 IPR000064 Endopeptidase, NLPC/P60 domain YP_1314 IPR038765 Papain-like cysteine peptidase superfamily YP_1315 IPR001633 EAL domain YP_1315 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain YP_1315 IPR035919 EAL domain superfamily YP_1316 IPR039424 Solute-binding protein family 5 YP_1316 IPR000914 Solute-binding protein family 5 domain YP_1316 IPR030678 Peptide/nickel binding protein, MppA-type YP_1317 IPR035906 MetI-like superfamily YP_1317 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1318 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1318 IPR035906 MetI-like superfamily YP_1318 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YP_1319 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YP_1319 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1319 IPR017871 ABC transporter, conserved site YP_1319 IPR003439 ABC transporter-like YP_1319 IPR003593 AAA+ ATPase domain YP_1320 IPR020489 Uncharacterised protein family YejG YP_1321 IPR036259 MFS transporter superfamily YP_1321 IPR004734 Multidrug resistance protein YP_1321 IPR011701 Major facilitator superfamily YP_1321 IPR020846 Major facilitator superfamily domain YP_1321 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YP_1322 IPR006145 Pseudouridine synthase, RsuA/RluA YP_1322 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YP_1322 IPR036986 RNA-binding S4 domain superfamily YP_1322 IPR020103 Pseudouridine synthase, catalytic domain superfamily YP_1322 IPR002942 RNA-binding S4 domain YP_1322 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain YP_1322 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YP_1323 IPR011332 Zinc-binding ribosomal protein YP_1323 IPR006935 Helicase/UvrB, N-terminal YP_1323 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_1323 IPR001650 Helicase, C-terminal YP_1323 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1324 IPR020055 Ribosomal protein L25, short-form YP_1324 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal YP_1324 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily YP_1324 IPR029751 Ribosomal protein L25 YP_1325 IPR036515 Transposase IS200-like superfamily YP_1325 IPR002686 Transposase IS200-like YP_1326 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_1326 IPR006664 Outer membrane protein, bacterial YP_1326 IPR036737 OmpA-like domain superfamily YP_1326 IPR006690 Outer membrane protein, OmpA-like, conserved site YP_1326 IPR006665 OmpA-like domain YP_1326 IPR002368 Outer membrane protein, OmpA YP_1326 IPR000498 Outer membrane protein OmpA-like, transmembrane domain YP_1327 IPR004596 Cell division suppressor protein, SulA YP_1327 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1328 IPR007076 TfoX, N-terminal YP_1328 IPR026256 Transcriptional regulator, TfoX/Sxy-type YP_1328 IPR007077 TfoX, C-terminal YP_1329 IPR032692 Integral membrane protein YccS, N-terminal YP_1329 IPR010020 Integral membrane protein, YccS/YhfK YP_1329 IPR010019 Integral membrane protein, YccS YP_1330 IPR005185 Inner membrane component domain YP_1330 IPR031308 Uncharacterised conserved protein UCP028777 YP_1331 IPR022161 DNA helicase IV, N-terminal domain YP_1331 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1331 IPR000212 DNA helicase, UvrD/REP type YP_1331 IPR014017 UvrD-like DNA helicase, C-terminal YP_1331 IPR034739 UvrD/AddA helicase, N-terminal YP_1331 IPR014016 UvrD-like helicase, ATP-binding domain YP_1332 IPR018148 Methylglyoxal synthase, active site YP_1332 IPR036914 Methylglyoxal synthase-like domain superfamily YP_1332 IPR004363 Methylglyoxal synthase YP_1332 IPR011607 Methylglyoxal synthase-like domain YP_1333 IPR018635 Uncharacterised protein family UPF0319 YP_1334 IPR036291 NAD(P)-binding domain superfamily YP_1334 IPR003781 CoA-binding YP_1335 IPR036623 Hemimethylated DNA-binding domain superfamily YP_1335 IPR011722 Hemimethylated DNA-binding domain YP_1335 IPR022866 Heat shock protein HspQ YP_1336 IPR023542 rRNA large subunit methyltransferase I YP_1336 IPR041532 RlmI, PUA-like domain YP_1336 IPR036974 PUA domain superfamily YP_1336 IPR015947 PUA-like superfamily YP_1336 IPR002478 PUA domain YP_1336 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1336 IPR019614 S-adenosylmethionine-dependent methyltransferase YP_1337 IPR028627 Acylphosphatase, bacteria YP_1337 IPR001792 Acylphosphatase-like domain YP_1337 IPR020456 Acylphosphatase YP_1337 IPR017968 Acylphosphatase, conserved site YP_1337 IPR036046 Acylphosphatase-like domain superfamily YP_1338 IPR025526 DsrC-like domain superfamily YP_1338 IPR042072 DsrC-like protein, C-terminal domain YP_1338 IPR007453 Sulphur transfer protein DsrC/TusE YP_1339 IPR032874 DDE domain YP_1339 IPR001584 Integrase, catalytic core YP_1339 IPR012337 Ribonuclease H-like superfamily YP_1339 IPR036397 Ribonuclease H superfamily YP_1341 IPR036397 Ribonuclease H superfamily YP_1341 IPR017894 HTH domain, IS21 transposase-type YP_1341 IPR012337 Ribonuclease H-like superfamily YP_1341 IPR006120 Resolvase, HTH domain YP_1341 IPR001584 Integrase, catalytic core YP_1342 IPR001270 ClpA/B family YP_1342 IPR003593 AAA+ ATPase domain YP_1342 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1342 IPR002611 IstB-like ATP-binding protein YP_1342 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_1343 IPR016164 FAD-linked oxidase-like, C-terminal YP_1343 IPR006093 Oxygen oxidoreductase covalent FAD-binding site YP_1343 IPR006094 FAD linked oxidase, N-terminal YP_1343 IPR016169 FAD-binding, type PCMH, subdomain 2 YP_1343 IPR016167 FAD-binding, type PCMH, subdomain 1 YP_1343 IPR036318 FAD-binding, type PCMH-like superfamily YP_1343 IPR016166 FAD-binding domain, PCMH-type YP_1343 IPR012951 Berberine/berberine-like YP_1344 IPR011294 3-hydroxybutyrate dehydrogenase YP_1344 IPR036291 NAD(P)-binding domain superfamily YP_1344 IPR020904 Short-chain dehydrogenase/reductase, conserved site YP_1344 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1346 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YP_1346 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YP_1346 IPR029069 HotDog domain superfamily YP_1347 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YP_1347 IPR000794 Beta-ketoacyl synthase YP_1347 IPR018201 Beta-ketoacyl synthase, active site YP_1347 IPR014031 Beta-ketoacyl synthase, C-terminal YP_1347 IPR016039 Thiolase-like YP_1347 IPR014030 Beta-ketoacyl synthase, N-terminal YP_1347 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YP_1348 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YP_1348 IPR036291 NAD(P)-binding domain superfamily YP_1348 IPR020904 Short-chain dehydrogenase/reductase, conserved site YP_1348 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1349 IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain YP_1349 IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal YP_1349 IPR016039 Thiolase-like YP_1351 IPR001753 Enoyl-CoA hydratase/isomerase YP_1351 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YP_1351 IPR029045 ClpP/crotonase-like domain superfamily YP_1352 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1352 IPR020904 Short-chain dehydrogenase/reductase, conserved site YP_1352 IPR036291 NAD(P)-binding domain superfamily YP_1354 IPR036736 ACP-like superfamily YP_1354 IPR009081 Phosphopantetheine binding ACP domain YP_1355 IPR024925 Malonyl CoA-acyl carrier protein transacylase YP_1355 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type YP_1355 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YP_1355 IPR014043 Acyl transferase YP_1355 IPR001227 Acyl transferase domain superfamily YP_1355 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YP_1360 IPR036737 OmpA-like domain superfamily YP_1360 IPR006690 Outer membrane protein, OmpA-like, conserved site YP_1360 IPR028974 TSP type-3 repeat YP_1360 IPR008722 Outer membrane porin F, N-terminal YP_1360 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_1360 IPR006665 OmpA-like domain YP_1360 IPR006664 Outer membrane protein, bacterial YP_1362 IPR004176 Clp, N-terminal YP_1362 IPR018368 ClpA/B, conserved site 1 YP_1362 IPR001270 ClpA/B family YP_1362 IPR003593 AAA+ ATPase domain YP_1362 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1362 IPR036628 Clp, N-terminal domain superfamily YP_1362 IPR041546 ClpA/ClpB, AAA lid domain YP_1362 IPR019489 Clp ATPase, C-terminal YP_1362 IPR017729 Type VI secretion system, ATPase ClpV1 YP_1362 IPR003959 ATPase, AAA-type, core YP_1369 IPR012337 Ribonuclease H-like superfamily YP_1369 IPR038717 Tc1-like transposase, DDE domain YP_1369 IPR009057 Homeobox-like domain superfamily YP_1369 IPR025959 Winged helix-turn helix domain YP_1381 IPR003593 AAA+ ATPase domain YP_1381 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1381 IPR003439 ABC transporter-like YP_1381 IPR032781 ABC-transporter extension domain YP_1383 IPR001207 Transposase, mutator type YP_1384 IPR000594 THIF-type NAD/FAD binding fold YP_1384 IPR035985 Ubiquitin-activating enzyme YP_1384 IPR012730 Molybdopterin synthase sulfurylase MoeB YP_1385 IPR038987 Molybdopterin biosynthesis protein MoeA-like YP_1385 IPR036688 MoeA, C-terminal, domain IV superfamily YP_1385 IPR005111 MoeA, C-terminal, domain IV YP_1385 IPR008284 Molybdenum cofactor biosynthesis, conserved site YP_1385 IPR001453 MoaB/Mog domain YP_1385 IPR036135 MoeA, N-terminal and linker domain superfamily YP_1385 IPR036425 MoaB/Mog-like domain superfamily YP_1385 IPR005110 MoeA, N-terminal and linker domain YP_1387 IPR003439 ABC transporter-like YP_1387 IPR017871 ABC transporter, conserved site YP_1387 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1387 IPR003593 AAA+ ATPase domain YP_1388 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YP_1388 IPR022824 Multidrug resistance protein MdtA YP_1388 IPR006143 RND efflux pump, membrane fusion protein YP_1391 IPR000801 Putative esterase YP_1391 IPR014186 S-formylglutathione hydrolase YP_1391 IPR029058 Alpha/Beta hydrolase fold YP_1392 IPR020843 Polyketide synthase, enoylreductase domain YP_1392 IPR036291 NAD(P)-binding domain superfamily YP_1392 IPR011032 GroES-like superfamily YP_1392 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site YP_1392 IPR013154 Alcohol dehydrogenase, N-terminal YP_1392 IPR013149 Alcohol dehydrogenase, C-terminal YP_1392 IPR014183 Alcohol dehydrogenase class III YP_1393 IPR000847 Transcription regulator HTH, LysR YP_1393 IPR005119 LysR, substrate-binding YP_1393 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1393 IPR036390 Winged helix DNA-binding domain superfamily YP_1394 IPR010645 Uncharacterised MFS-type transporter YbfB YP_1394 IPR036259 MFS transporter superfamily YP_1395 IPR018234 GTP cyclohydrolase I, conserved site YP_1395 IPR001474 GTP cyclohydrolase I YP_1395 IPR020602 GTP cyclohydrolase I domain YP_1396 IPR007349 Domain of unknown function DUF418 YP_1397 IPR028082 Periplasmic binding protein-like I YP_1397 IPR025997 Periplasmic binding protein YP_1398 IPR015862 ABC transporter, galactose import, MglA YP_1398 IPR017871 ABC transporter, conserved site YP_1398 IPR003439 ABC transporter-like YP_1398 IPR003593 AAA+ ATPase domain YP_1398 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1399 IPR030158 Galactoside transport system permease protein MglC YP_1399 IPR001851 ABC transporter, permease YP_1400 IPR003848 Domain of unknown function DUF218 YP_1400 IPR023604 Uncharacterised protein family SanA YP_1401 IPR012302 Malic enzyme, NAD-binding YP_1401 IPR001891 Malic oxidoreductase YP_1401 IPR015884 Malic enzyme, conserved site YP_1401 IPR023667 NAD-dependent malic enzyme, proteobacteria YP_1401 IPR012301 Malic enzyme, N-terminal domain YP_1401 IPR036291 NAD(P)-binding domain superfamily YP_1401 IPR037062 Malic enzyme, N-terminal domain superfamily YP_1402 IPR006263 Cytidine deaminase, homodimeric YP_1402 IPR016192 APOBEC/CMP deaminase, zinc-binding YP_1402 IPR016193 Cytidine deaminase-like YP_1402 IPR020797 Cytidine deaminase, bacteria YP_1402 IPR002125 Cytidine and deoxycytidylate deaminase domain YP_1402 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain YP_1403 IPR005261 Conserved hypothetical protein CHP00659 YP_1403 IPR007300 CidB/LrgB family YP_1404 IPR005538 LrgA/CidA family YP_1404 IPR022957 Uncharacterised protein family UPF0299 YP_1405 IPR011701 Major facilitator superfamily YP_1405 IPR020846 Major facilitator superfamily domain YP_1405 IPR036259 MFS transporter superfamily YP_1410 IPR002686 Transposase IS200-like YP_1410 IPR036515 Transposase IS200-like superfamily YP_1411 IPR014758 Methionyl-tRNA synthetase YP_1411 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain YP_1411 IPR023458 Methionine-tRNA ligase, type 1 YP_1411 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal YP_1411 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YP_1411 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YP_1411 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_1411 IPR002547 tRNA-binding domain YP_1411 IPR029038 Methionyl-tRNA synthetase, Zn-domain YP_1411 IPR012340 Nucleic acid-binding, OB-fold YP_1411 IPR033911 Methioninyl-tRNA synthetase core domain YP_1411 IPR015413 Methionyl/Leucyl tRNA synthetase YP_1412 IPR000808 Mrp, conserved site YP_1412 IPR034904 Fe-S cluster assembly domain superfamily YP_1412 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1412 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 YP_1412 IPR019591 Mrp/NBP35 ATP-binding protein YP_1413 IPR000764 Uridine kinase-like YP_1413 IPR026008 Uridine kinase YP_1413 IPR006083 Phosphoribulokinase/uridine kinase YP_1413 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1414 IPR029054 dUTPase-like YP_1414 IPR033704 dUTPase, trimeric YP_1414 IPR036157 dUTPase-like superfamily YP_1414 IPR011962 dCTP deaminase YP_1415 IPR007844 AsmA YP_1416 IPR005496 Integral membrane protein TerC YP_1416 IPR016169 FAD-binding, type PCMH, subdomain 2 YP_1416 IPR005170 Transporter-associated domain YP_1416 IPR000644 CBS domain YP_1416 IPR036318 FAD-binding, type PCMH-like superfamily YP_1417 IPR024726 Ferric iron reductase, C-terminal YP_1417 IPR022770 Ferric iron reductase FhuF domain YP_1417 IPR008090 Ferric iron reductase YP_1418 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_1418 IPR021115 Pyridoxal-phosphate binding site YP_1418 IPR002129 Pyridoxal phosphate-dependent decarboxylase YP_1418 IPR015424 Pyridoxal phosphate-dependent transferase YP_1419 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YP_1419 IPR036188 FAD/NAD(P)-binding domain superfamily YP_1421 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YP_1421 IPR022770 Ferric iron reductase FhuF domain YP_1421 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YP_1422 IPR003593 AAA+ ATPase domain YP_1422 IPR017871 ABC transporter, conserved site YP_1422 IPR003439 ABC transporter-like YP_1422 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1423 IPR037294 ABC transporter, BtuC-like YP_1423 IPR000522 ABC transporter, permease protein, BtuC-like YP_1424 IPR000522 ABC transporter, permease protein, BtuC-like YP_1424 IPR037294 ABC transporter, BtuC-like YP_1425 IPR002491 ABC transporter periplasmic binding domain YP_1426 IPR000531 TonB-dependent receptor-like, beta-barrel YP_1426 IPR039423 TonB-dependent receptor-like YP_1426 IPR011662 Secretin/TonB, short N-terminal domain YP_1426 IPR010917 TonB-dependent receptor, conserved site YP_1426 IPR012910 TonB-dependent receptor, plug domain YP_1426 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_1426 IPR037066 TonB-dependent receptor, plug domain superfamily YP_1426 IPR010105 TonB-dependent siderophore receptor YP_1427 IPR022770 Ferric iron reductase FhuF domain YP_1427 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YP_1427 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YP_1428 IPR029044 Nucleotide-diphospho-sugar transferases YP_1428 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type YP_1428 IPR005835 Nucleotidyl transferase domain YP_1429 IPR029044 Nucleotide-diphospho-sugar transferases YP_1429 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type YP_1429 IPR005835 Nucleotidyl transferase domain YP_1430 IPR036291 NAD(P)-binding domain superfamily YP_1430 IPR006184 6-phosphogluconate-binding site YP_1430 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding YP_1430 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating YP_1430 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YP_1430 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YP_1430 IPR006183 6-phosphogluconate dehydrogenase YP_1430 IPR006114 6-phosphogluconate dehydrogenase, C-terminal YP_1431 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like YP_1431 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain YP_1431 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily YP_1431 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase YP_1431 IPR023019 Histidine biosynthesis bifunctional protein HisIE YP_1432 IPR004651 Histidine biosynthesis, HisF YP_1432 IPR006062 Histidine biosynthesis YP_1432 IPR013785 Aldolase-type TIM barrel YP_1432 IPR011060 Ribulose-phosphate binding barrel YP_1433 IPR006062 Histidine biosynthesis YP_1433 IPR011060 Ribulose-phosphate binding barrel YP_1433 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_1433 IPR013785 Aldolase-type TIM barrel YP_1433 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA YP_1434 IPR029062 Class I glutamine amidotransferase-like YP_1434 IPR010139 Imidazole glycerol phosphate synthase, subunit H YP_1434 IPR017926 Glutamine amidotransferase YP_1435 IPR020568 Ribosomal protein S5 domain 2-type fold YP_1435 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site YP_1435 IPR036412 HAD-like superfamily YP_1435 IPR006549 HAD-superfamily hydrolase,subfamily IIIA YP_1435 IPR005954 Histidinol-phosphatase YP_1435 IPR020566 Histidine biosynthesis bifunctional protein HisB YP_1435 IPR023214 HAD superfamily YP_1435 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily YP_1435 IPR000807 Imidazoleglycerol-phosphate dehydratase YP_1435 IPR006543 Histidinol-phosphate phosphatase YP_1436 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YP_1436 IPR005861 Histidinol-phosphate aminotransferase family YP_1436 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_1436 IPR004839 Aminotransferase, class I/classII YP_1436 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_1436 IPR015424 Pyridoxal phosphate-dependent transferase YP_1437 IPR016161 Aldehyde/histidinol dehydrogenase YP_1437 IPR001692 Histidinol dehydrogenase, conserved site YP_1437 IPR022695 Histidinol dehydrogenase, monofunctional YP_1437 IPR012131 Histidinol dehydrogenase YP_1438 IPR001348 ATP phosphoribosyltransferase HisG YP_1438 IPR020621 ATP phosphoribosyltransferase HisG, long form YP_1438 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YP_1438 IPR018198 ATP phosphoribosyltransferase, conserved site YP_1438 IPR013820 ATP phosphoribosyltransferase, catalytic domain YP_1438 IPR011322 Nitrogen regulatory PII-like, alpha/beta YP_1438 IPR013115 Histidine biosynthesis HisG, C-terminal YP_1440 IPR036291 NAD(P)-binding domain superfamily YP_1440 IPR001509 NAD-dependent epimerase/dehydratase YP_1442 IPR001851 ABC transporter, permease YP_1444 IPR016205 Glycerol dehydrogenase YP_1444 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YP_1444 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YP_1445 IPR002293 Amino acid/polyamine transporter I YP_1446 IPR034748 Exonuclease I, C-terminal alpha-helical domain YP_1446 IPR023607 Exodeoxyribonuclease I YP_1446 IPR012337 Ribonuclease H-like superfamily YP_1446 IPR038649 Exonuclease I, SH3-like domain superfamily YP_1446 IPR036397 Ribonuclease H superfamily YP_1446 IPR013620 Exodeoxyribonuclease I, C-terminal YP_1446 IPR034747 Exonuclease I, SH3-like domain YP_1446 IPR013520 Exonuclease, RNase T/DNA polymerase III YP_1448 IPR007458 Protein of unknown function DUF496 YP_1451 IPR020846 Major facilitator superfamily domain YP_1451 IPR036259 MFS transporter superfamily YP_1451 IPR011701 Major facilitator superfamily YP_1452 IPR007263 Protein of unknown function DUF393 YP_1453 IPR020904 Short-chain dehydrogenase/reductase, conserved site YP_1453 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1453 IPR036291 NAD(P)-binding domain superfamily YP_1454 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YP_1454 IPR011234 Fumarylacetoacetase-like, C-terminal YP_1455 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YP_1455 IPR029017 Enolase-like, N-terminal YP_1455 IPR029065 Enolase C-terminal domain-like YP_1455 IPR034610 L-fuconate dehydratase YP_1455 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_1455 IPR036849 Enolase-like, C-terminal domain superfamily YP_1457 IPR037396 FMN hydroxy acid dehydrogenase domain YP_1457 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site YP_1457 IPR000262 FMN-dependent dehydrogenase YP_1457 IPR020920 L-lactate dehydrogenase, bacterial YP_1457 IPR013785 Aldolase-type TIM barrel YP_1457 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent YP_1458 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body YP_1458 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail YP_1458 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_1458 IPR023437 Argininosuccinate synthase, type 2 subfamily YP_1458 IPR001518 Argininosuccinate synthase YP_1458 IPR018223 Argininosuccinate synthase, conserved site YP_1459 IPR002528 Multi antimicrobial extrusion protein YP_1461 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YP_1461 IPR037950 Peptidoglycan deacetylase PgdA-like YP_1461 IPR002509 NodB homology domain YP_1463 IPR018636 Protein of unknown function DUF2058 YP_1464 IPR016032 Signal transduction response regulator, C-terminal effector YP_1464 IPR001789 Signal transduction response regulator, receiver domain YP_1464 IPR000792 Transcription regulator LuxR, C-terminal YP_1464 IPR011006 CheY-like superfamily YP_1465 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit YP_1465 IPR004681 TRAP transporter large membrane protein DctM YP_1467 IPR018389 TRAP transporter solute receptor DctP/TeaA YP_1467 IPR038404 TRAP transporter solute receptor DctP superfamily YP_1467 IPR004682 TRAP transporter solute receptor, DctP family YP_1468 IPR037143 4'-phosphopantetheinyl transferase domain superfamily YP_1468 IPR041354 4'-phosphopantetheinyl transferase, N-terminal domain YP_1468 IPR003542 Enterobactin synthetase-like, component D YP_1468 IPR008278 4'-phosphopantetheinyl transferase domain YP_1469 IPR031704 Glycosyl hydrolase family 36, N-terminal YP_1469 IPR002252 Glycoside hydrolase family 36 YP_1469 IPR000111 Glycoside hydrolase family 27/36, conserved site YP_1469 IPR038417 Alpha-galactosidase, N-terminal domain superfamily YP_1469 IPR013785 Aldolase-type TIM barrel YP_1469 IPR017853 Glycoside hydrolase superfamily YP_1469 IPR031705 Glycosyl hydrolase family 36, C-terminal YP_1470 IPR018457 LacY/RafB permease family, conserved site YP_1470 IPR020846 Major facilitator superfamily domain YP_1470 IPR036259 MFS transporter superfamily YP_1470 IPR000576 LacY/RafB permease family YP_1471 IPR028082 Periplasmic binding protein-like I YP_1471 IPR001761 Periplasmic binding protein/LacI sugar binding domain YP_1471 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_1471 IPR000843 LacI-type HTH domain YP_1472 IPR042252 MtfA, N-terminal YP_1472 IPR010384 MtfA family YP_1472 IPR024079 Metallopeptidase, catalytic domain superfamily YP_1475 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1475 IPR039421 Type I protein exporter YP_1475 IPR003439 ABC transporter-like YP_1475 IPR003593 AAA+ ATPase domain YP_1475 IPR011527 ABC transporter type 1, transmembrane domain YP_1475 IPR017871 ABC transporter, conserved site YP_1475 IPR036640 ABC transporter type 1, transmembrane domain superfamily YP_1478 IPR020449 Transcription regulator HTH, AraC- type YP_1478 IPR018062 HTH domain AraC-type, conserved site YP_1478 IPR009057 Homeobox-like domain superfamily YP_1478 IPR018060 DNA binding HTH domain, AraC-type YP_1479 IPR020262 Uncharacterised protein family YecJ YP_1480 IPR025611 YobH-like protein YP_1481 IPR025594 YebO-like protein YP_1484 IPR004840 Amino acid permease, conserved site YP_1484 IPR004841 Amino acid permease/ SLC12A domain YP_1485 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP YP_1485 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_1486 IPR012156 Cold shock, CspA YP_1486 IPR011129 Cold shock domain YP_1486 IPR019844 Cold-shock (CSD) domain YP_1486 IPR012340 Nucleic acid-binding, OB-fold YP_1486 IPR002059 Cold-shock protein, DNA-binding YP_1488 IPR025714 Methyltransferase domain YP_1488 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted YP_1488 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1490 IPR001610 PAC motif YP_1490 IPR013655 PAS fold-3 YP_1490 IPR013656 PAS fold-4 YP_1490 IPR035965 PAS domain superfamily YP_1490 IPR000700 PAS-associated, C-terminal YP_1490 IPR000014 PAS domain YP_1490 IPR029787 Nucleotide cyclase YP_1490 IPR007895 MASE1 YP_1490 IPR000160 GGDEF domain YP_1490 IPR035919 EAL domain superfamily YP_1490 IPR001633 EAL domain YP_1491 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1491 IPR003593 AAA+ ATPase domain YP_1491 IPR001270 ClpA/B family YP_1491 IPR002611 IstB-like ATP-binding protein YP_1491 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_1492 IPR012337 Ribonuclease H-like superfamily YP_1492 IPR006120 Resolvase, HTH domain YP_1492 IPR017894 HTH domain, IS21 transposase-type YP_1492 IPR001584 Integrase, catalytic core YP_1492 IPR036397 Ribonuclease H superfamily YP_1497 IPR003593 AAA+ ATPase domain YP_1497 IPR003439 ABC transporter-like YP_1497 IPR017871 ABC transporter, conserved site YP_1497 IPR015855 ABC transporter, maltose/maltodextrin import, MalK YP_1497 IPR008995 Molybdate/tungstate binding, C-terminal YP_1497 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1497 IPR013611 Transport-associated OB, type 2 YP_1498 IPR035906 MetI-like superfamily YP_1498 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1499 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1499 IPR035906 MetI-like superfamily YP_1501 IPR004104 Oxidoreductase, C-terminal YP_1501 IPR000683 Oxidoreductase, N-terminal YP_1501 IPR036291 NAD(P)-binding domain superfamily YP_1501 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase YP_1503 IPR000600 ROK family YP_1503 IPR023945 N-acetylmannosamine kinase, bacterial YP_1520 IPR008514 Type VI secretion system effector, Hcp YP_1520 IPR036624 Hcp1-like superfamily YP_1526 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial YP_1526 IPR000462 CDP-alcohol phosphatidyltransferase YP_1526 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_1527 IPR000305 GIY-YIG endonuclease YP_1527 IPR035901 GIY-YIG endonuclease superfamily YP_1527 IPR010994 RuvA domain 2-like YP_1527 IPR001943 UVR domain YP_1527 IPR036876 UVR domain superfamily YP_1527 IPR004791 UvrABC system, subunit C YP_1527 IPR001162 UvrC family homology region YP_1527 IPR038476 UvrC homology region 2 superfamily YP_1527 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YP_1528 IPR000792 Transcription regulator LuxR, C-terminal YP_1528 IPR016032 Signal transduction response regulator, C-terminal effector YP_1528 IPR011006 CheY-like superfamily YP_1528 IPR001789 Signal transduction response regulator, receiver domain YP_1530 IPR009707 Membrane protein GlpM/YdgC YP_1533 IPR027385 Outer membrane protein beta-barrel domain YP_1533 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_1533 IPR000758 Virulence-related outer membrane protein YP_1534 IPR004841 Amino acid permease/ SLC12A domain YP_1534 IPR004840 Amino acid permease, conserved site YP_1535 IPR015915 Kelch-type beta propeller YP_1535 IPR006652 Kelch repeat type 1 YP_1535 IPR019936 Mutatrotase, YjhT-like YP_1536 IPR008254 Flavodoxin/nitric oxide synthase YP_1536 IPR005025 NADPH-dependent FMN reductase-like YP_1536 IPR010089 Flavoprotein WrbA-like YP_1536 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic YP_1536 IPR029039 Flavoprotein-like superfamily YP_1537 IPR011008 Dimeric alpha-beta barrel YP_1537 IPR006311 Twin-arginine translocation pathway, signal sequence YP_1537 IPR006313 Deferrochelatase/peroxidase EfeB YP_1537 IPR006314 Dyp-type peroxidase YP_1538 IPR038352 Imelysin-like domain superfamily YP_1538 IPR034981 EfeO/Algp7, imelysin-like domain YP_1538 IPR018976 Imelysin-like domain YP_1538 IPR028096 EfeO-type cupredoxin-like domain YP_1538 IPR008972 Cupredoxin YP_1539 IPR005217 Iron permease FTR1-like YP_1539 IPR004923 Iron permease FTR1/Fip1/EfeU YP_1540 IPR018212 Sodium/solute symporter, conserved site YP_1540 IPR001734 Sodium/solute symporter YP_1540 IPR038377 Sodium/glucose symporter superfamily YP_1540 IPR011851 Sodium/proline symporter YP_1542 IPR002872 Proline dehydrogenase domain YP_1542 IPR010985 Ribbon-helix-helix YP_1542 IPR024089 Proline dehydrogenase PutA, domain I/II YP_1542 IPR016161 Aldehyde/histidinol dehydrogenase YP_1542 IPR016163 Aldehyde dehydrogenase, C-terminal YP_1542 IPR024082 Proline dehydrogenase PutA, domain II YP_1542 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YP_1542 IPR016162 Aldehyde dehydrogenase, N-terminal YP_1542 IPR016160 Aldehyde dehydrogenase, cysteine active site YP_1542 IPR013321 Arc-type ribbon-helix-helix YP_1542 IPR025703 Bifunctional protein PutA YP_1542 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 YP_1542 IPR029041 FAD-linked oxidoreductase-like YP_1542 IPR024090 Proline dehydrogenase PutA, domain I YP_1542 IPR015590 Aldehyde dehydrogenase domain YP_1542 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain YP_1548 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_1548 IPR001926 Pyridoxal-phosphate dependent enzyme YP_1548 IPR023702 D-cysteine desulphhydrase, bacterial YP_1548 IPR005966 D-cysteine desulfhydrase YP_1548 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase YP_1549 IPR004107 Integrase, SAM-like, N-terminal YP_1549 IPR022523 Flagellar regulator, FliZ YP_1550 IPR028617 RNA polymerase sigma factor FliA YP_1550 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_1550 IPR013325 RNA polymerase sigma factor, region 2 YP_1550 IPR012845 RNA polymerase sigma factor, FliA/WhiG YP_1550 IPR014284 RNA polymerase sigma-70 like domain YP_1550 IPR000943 RNA polymerase sigma-70 YP_1550 IPR007627 RNA polymerase sigma-70 region 2 YP_1550 IPR007630 RNA polymerase sigma-70 region 4 YP_1550 IPR007624 RNA polymerase sigma-70 region 3 YP_1551 IPR014981 Flagellin D3 YP_1551 IPR001029 Flagellin, D0/D1 domain YP_1551 IPR001492 Flagellin YP_1552 IPR040026 Flagellar hook-associated protein 2 YP_1552 IPR010810 Flagellin hook, IN motif YP_1552 IPR003481 Flagellar hook-associated protein 2, N-terminal YP_1552 IPR010809 Flagellar hook-associated protein 2, C-terminal YP_1553 IPR036584 Flagellar protein FliS superfamily YP_1553 IPR003713 Flagellar protein FliS YP_1554 IPR008622 Flagellar protein FliT YP_1556 IPR020449 Transcription regulator HTH, AraC- type YP_1556 IPR009057 Homeobox-like domain superfamily YP_1556 IPR018060 DNA binding HTH domain, AraC-type YP_1556 IPR018062 HTH domain AraC-type, conserved site YP_1558 IPR003265 HhH-GPD domain YP_1558 IPR011257 DNA glycosylase YP_1561 IPR001624 Flagellar hook-basal body complex protein FliE YP_1562 IPR013556 Flagellar M-ring C-terminal YP_1562 IPR006182 Secretory protein YscJ/FliF YP_1562 IPR000067 Flagellar M-ring protein FliF YP_1563 IPR028263 Flagellar motor switch protein FliG, N-terminal domain YP_1563 IPR000090 Flagellar motor switch protein FliG YP_1563 IPR023087 Flagellar motor switch protein FliG, C-terminal YP_1563 IPR011002 Flagellar motor switch protein FliG, alpha-helical YP_1563 IPR032779 Flagellar motor switch protein FliG, middle domain YP_1564 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YP_1564 IPR000563 Flagellar assembly protein FliH YP_1565 IPR032463 ATPase, type III secretion system, FliI YP_1565 IPR005714 ATPase, type III secretion system, FliI/YscN YP_1565 IPR020005 Flagellar export ATPase FliI, clade 1 YP_1565 IPR040627 T3SS EscN ATPase, C-terminal YP_1565 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YP_1565 IPR003593 AAA+ ATPase domain YP_1565 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YP_1565 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1566 IPR018006 Flagellar FliJ, proteobacteria YP_1566 IPR012823 Flagellar export FliJ YP_1567 IPR021136 Flagellar hook-length control protein-like, C-terminal YP_1567 IPR001635 Flagellar hook-length control protein FliK YP_1567 IPR038610 FliK-like, C-terminal domain superfamily YP_1568 IPR005503 Flagellar basal body-associated protein FliL YP_1569 IPR036429 SpoA-like superfamily YP_1569 IPR028976 CheC-like superfamily YP_1569 IPR001543 Surface presentation of antigen (SpoA) YP_1569 IPR001689 Flagellar motor switch protein FliM YP_1570 IPR036429 SpoA-like superfamily YP_1570 IPR001543 Surface presentation of antigen (SpoA) YP_1570 IPR012826 Flagellar motor switch FliN YP_1570 IPR031576 Flagellar motor switch protein FliN, N-terminal YP_1570 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YP_1571 IPR022781 Flagellar biosynthesis protein, FliO YP_1572 IPR005837 Flagellar transport protein FliP YP_1572 IPR005838 Type III secretion system inner membrane P protein YP_1573 IPR006305 Flagellar biosynthesis protein FliQ YP_1573 IPR002191 Bacterial export protein family 3 YP_1574 IPR006303 Flagellar biosynthesis protein FliR YP_1574 IPR002010 Type III secretion system inner membrane R protein YP_1577 IPR029056 Ribokinase-like YP_1577 IPR002139 Ribokinase/fructokinase YP_1577 IPR011611 Carbohydrate kinase PfkB YP_1577 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YP_1577 IPR030877 Sulfofructose kinase YP_1578 IPR001851 ABC transporter, permease YP_1579 IPR003593 AAA+ ATPase domain YP_1579 IPR003439 ABC transporter-like YP_1579 IPR017871 ABC transporter, conserved site YP_1579 IPR015861 ABC transporter, ribose import, RbsA YP_1579 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1580 IPR025997 Periplasmic binding protein YP_1580 IPR028082 Periplasmic binding protein-like I YP_1580 IPR030159 Autoinducer 2 ABC transporter, substrate-binding protein LsrB YP_1581 IPR001851 ABC transporter, permease YP_1582 IPR001303 Class II aldolase/adducin N-terminal YP_1582 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YP_1582 IPR013454 Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase YP_1582 IPR036291 NAD(P)-binding domain superfamily YP_1582 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1583 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1583 IPR037171 NagB/RpiA transferase-like YP_1583 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_1583 IPR007324 Sugar-binding domain, putative YP_1584 IPR001029 Flagellin, D0/D1 domain YP_1584 IPR013384 Flagellar hook-associated protein 3 YP_1585 IPR002371 Flagellar hook-associated protein 1 YP_1585 IPR001444 Flagellar basal body rod protein, N-terminal YP_1585 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_1586 IPR013377 Peptidoglycan hydrolase FlgJ YP_1586 IPR019301 Flagellar protein FlgJ, N-terminal YP_1586 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain YP_1587 IPR001782 Flagellar P-ring protein YP_1588 IPR000527 Flagellar L-ring protein YP_1589 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_1589 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YP_1589 IPR012834 Flagellar basal-body rod FlgG YP_1589 IPR001444 Flagellar basal body rod protein, N-terminal YP_1589 IPR019776 Flagellar basal body rod protein, conserved site YP_1589 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YP_1590 IPR019776 Flagellar basal body rod protein, conserved site YP_1590 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_1590 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YP_1590 IPR001444 Flagellar basal body rod protein, N-terminal YP_1590 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YP_1591 IPR001444 Flagellar basal body rod protein, N-terminal YP_1591 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YP_1591 IPR011491 Flagellar hook protein FlgE YP_1591 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_1591 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YP_1591 IPR019776 Flagellar basal body rod protein, conserved site YP_1591 IPR037058 Flagellar hook protein FlgE superfamily YP_1592 IPR025963 FlgD Tudor-like domain YP_1592 IPR025965 FlgD Ig-like domain YP_1592 IPR005648 Flagellar hook capping protein YP_1593 IPR006299 Flagellar basal-body rod protein FlgC YP_1593 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_1593 IPR019776 Flagellar basal body rod protein, conserved site YP_1593 IPR001444 Flagellar basal body rod protein, N-terminal YP_1594 IPR019776 Flagellar basal body rod protein, conserved site YP_1594 IPR001444 Flagellar basal body rod protein, N-terminal YP_1594 IPR006300 Flagellar basal-body rod protein FlgB YP_1595 IPR041231 FlgA, N-terminal YP_1595 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YP_1595 IPR013974 SAF domain YP_1595 IPR039246 Flagellar protein FlgA YP_1596 IPR031316 Anti-sigma-28 factor FlgM, C-terminal YP_1596 IPR007412 Anti-sigma-28 factor, FlgM YP_1596 IPR035890 Anti-sigma-28 factor FlgM superfamily YP_1597 IPR007809 FlgN-like protein YP_1597 IPR036679 FlgN-like superfamily YP_1599 IPR036515 Transposase IS200-like superfamily YP_1599 IPR002686 Transposase IS200-like YP_1600 IPR009420 Flagellar protein FlhE YP_1601 IPR001712 Type III secretion system FHIPEP YP_1601 IPR006301 Flagellar biosynthesis protein FlhA YP_1601 IPR025505 FHIPEP conserved site YP_1601 IPR042196 FHIPEP, domain 4 YP_1601 IPR042193 FHIPEP, domain 3 YP_1601 IPR042194 FHIPEP, domain 1 YP_1602 IPR006136 Flagellar biosynthetic protein FlhB YP_1602 IPR006135 Type III secretion system substrate exporter YP_1602 IPR029025 Type III secretion system substrate exporter, C-terminal YP_1606 IPR019648 Protein of unknown function DUF2511 YP_1608 IPR032694 Copper transport protein C/D YP_1608 IPR007348 CopC domain YP_1608 IPR014756 Immunoglobulin E-set YP_1610 IPR041719 Ferritin, prokaryotic-type YP_1610 IPR001519 Ferritin YP_1610 IPR009078 Ferritin-like superfamily YP_1610 IPR008331 Ferritin/DPS protein domain YP_1610 IPR012347 Ferritin-like YP_1610 IPR009040 Ferritin-like diiron domain YP_1611 IPR009052 DNA polymerase III-theta, bacterial YP_1611 IPR036745 DNA polymerase III-theta superfamily YP_1612 IPR029058 Alpha/Beta hydrolase fold YP_1612 IPR000073 Alpha/beta hydrolase fold-1 YP_1612 IPR002410 Peptidase S33 YP_1612 IPR005944 Proline iminopeptidase YP_1613 IPR002471 Peptidase S9, serine active site YP_1613 IPR029058 Alpha/Beta hydrolase fold YP_1613 IPR023302 Peptidase S9A, N-terminal domain YP_1613 IPR002470 Peptidase S9A, prolyl oligopeptidase YP_1613 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain YP_1614 IPR025603 YebF/Colicin-M immunity protein YP_1614 IPR038703 YebF/Cmi superfamily YP_1614 IPR020236 Uncharacterised protein family YebF YP_1616 IPR009813 Uncharacterised protein family YebG YP_1616 IPR038627 YebG-like superfamily YP_1617 IPR011545 DEAD/DEAH box helicase domain YP_1617 IPR028619 ATP-dependent RNA helicase DbpA YP_1617 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_1617 IPR001650 Helicase, C-terminal YP_1617 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YP_1617 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1617 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YP_1617 IPR014014 RNA helicase, DEAD-box type, Q motif YP_1617 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain YP_1618 IPR016185 Pre-ATP-grasp domain superfamily YP_1618 IPR013815 ATP-grasp fold, subdomain 1 YP_1618 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase YP_1618 IPR011054 Rudiment single hybrid motif YP_1618 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YP_1618 IPR011761 ATP-grasp fold YP_1619 IPR005371 Uncharacterised protein family UPF0181 YP_1620 IPR015890 Chorismate-utilising enzyme, C-terminal YP_1620 IPR006805 Anthranilate synthase component I, N-terminal YP_1620 IPR019999 Anthranilate synthase component I-like YP_1620 IPR005801 ADC synthase YP_1620 IPR005802 Aminodeoxychorismate synthase, component I YP_1621 IPR023735 Uncharacterised nudix hydrolase NudL YP_1621 IPR000059 NUDIX hydrolase, NudL, conserved site YP_1621 IPR000086 NUDIX hydrolase domain YP_1621 IPR015797 NUDIX hydrolase-like domain superfamily YP_1622 IPR005130 Serine dehydratase-like, alpha subunit YP_1622 IPR005131 Serine dehydratase beta chain YP_1622 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form YP_1622 IPR029009 Allosteric substrate binding domain superfamily YP_1623 IPR002563 Flavin reductase like domain YP_1623 IPR011982 4-hydroxyphenylacetate 3-monooxygenase, reductase component YP_1623 IPR012349 FMN-binding split barrel YP_1624 IPR004925 HpaB/PvcC/4-BUDH YP_1624 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein YP_1624 IPR012688 4-HPA 3-monooxygenase large component, gammaproteobacteria YP_1624 IPR024674 HpaB/PvcC/4-BUDH N-terminal YP_1624 IPR024719 HpaB/PvcC/4-BUDH C-terminal YP_1624 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal YP_1624 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily YP_1625 IPR020846 Major facilitator superfamily domain YP_1625 IPR011701 Major facilitator superfamily YP_1625 IPR036259 MFS transporter superfamily YP_1626 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YP_1626 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YP_1626 IPR023701 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, Enterobacteriales YP_1626 IPR005000 HpcH/HpaI aldolase/citrate lyase domain YP_1626 IPR040442 Pyruvate kinase-like domain superfamily YP_1627 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YP_1627 IPR012690 2-oxo-hepta-4-ene-1,7-dioic acid hydratase YP_1627 IPR011234 Fumarylacetoacetase-like, C-terminal YP_1628 IPR014347 Tautomerase/MIF superfamily YP_1628 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase YP_1629 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YP_1629 IPR011984 3,4-dihydroxyphenylacetate 2,3-dioxygenase YP_1630 IPR016163 Aldehyde dehydrogenase, C-terminal YP_1630 IPR016161 Aldehyde/histidinol dehydrogenase YP_1630 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YP_1630 IPR016162 Aldehyde dehydrogenase, N-terminal YP_1630 IPR015590 Aldehyde dehydrogenase domain YP_1630 IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YP_1630 IPR016160 Aldehyde dehydrogenase, cysteine active site YP_1632 IPR000835 MarR-type HTH domain YP_1632 IPR012712 HTH-type transcriptional regulator HpaR/FarR YP_1632 IPR036390 Winged helix DNA-binding domain superfamily YP_1632 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1632 IPR023187 Transcriptional regulator MarR-type, conserved site YP_1633 IPR005496 Integral membrane protein TerC YP_1633 IPR000644 CBS domain YP_1633 IPR005170 Transporter-associated domain YP_1633 IPR036318 FAD-binding, type PCMH-like superfamily YP_1633 IPR016169 FAD-binding, type PCMH, subdomain 2 YP_1634 IPR004701 Phosphotransferase system, mannose-type IIA component YP_1634 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily YP_1634 IPR033887 PTS system mannose/sorbose specific IIA subunit YP_1634 IPR004720 Phosphotransferase system, sorbose subfamily IIB component YP_1634 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily YP_1634 IPR013789 Phosphotransferase system, mannose family IIA component YP_1634 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup YP_1635 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit YP_1636 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component YP_1637 IPR009328 Protein of unknown function DUF986 YP_1638 IPR003810 Putative manganese efflux pump YP_1638 IPR022929 Putative manganese efflux pump MntP YP_1641 IPR017894 HTH domain, IS21 transposase-type YP_1641 IPR001584 Integrase, catalytic core YP_1641 IPR006120 Resolvase, HTH domain YP_1641 IPR012337 Ribonuclease H-like superfamily YP_1641 IPR036397 Ribonuclease H superfamily YP_1642 IPR003593 AAA+ ATPase domain YP_1642 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1642 IPR002611 IstB-like ATP-binding protein YP_1642 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_1642 IPR001270 ClpA/B family YP_1649 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_1649 IPR012910 TonB-dependent receptor, plug domain YP_1649 IPR039426 Vitamin B12 transporter BtuB-like YP_1649 IPR000531 TonB-dependent receptor-like, beta-barrel YP_1649 IPR010105 TonB-dependent siderophore receptor YP_1650 IPR000873 AMP-dependent synthetase/ligase YP_1650 IPR011963 2,3-dihydroxybenzoate-AMP ligase YP_1650 IPR020845 AMP-binding, conserved site YP_1650 IPR025110 AMP-binding enzyme, C-terminal domain YP_1651 IPR001031 Thioesterase YP_1651 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS YP_1651 IPR020802 Polyketide synthase, thioesterase domain YP_1651 IPR029058 Alpha/Beta hydrolase fold YP_1653 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YP_1653 IPR016039 Thiolase-like YP_1653 IPR001242 Condensation domain YP_1653 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YP_1653 IPR009081 Phosphopantetheine binding ACP domain YP_1653 IPR018201 Beta-ketoacyl synthase, active site YP_1653 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YP_1653 IPR014043 Acyl transferase YP_1653 IPR036736 ACP-like superfamily YP_1653 IPR014031 Beta-ketoacyl synthase, C-terminal YP_1653 IPR001227 Acyl transferase domain superfamily YP_1653 IPR014030 Beta-ketoacyl synthase, N-terminal YP_1653 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YP_1653 IPR032821 Ketoacyl-synthetase, C-terminal extension YP_1653 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YP_1654 IPR001242 Condensation domain YP_1654 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YP_1654 IPR036736 ACP-like superfamily YP_1654 IPR020845 AMP-binding, conserved site YP_1654 IPR000873 AMP-dependent synthetase/ligase YP_1654 IPR010071 Amino acid adenylation domain YP_1654 IPR013217 Methyltransferase type 12 YP_1654 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1654 IPR006162 Phosphopantetheine attachment site YP_1654 IPR009081 Phosphopantetheine binding ACP domain YP_1654 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YP_1654 IPR042099 AMP-dependent synthetase-like superfamily YP_1656 IPR013113 FAD-binding 9, siderophore-interacting YP_1656 IPR017927 FAD-binding domain, ferredoxin reductase-type YP_1656 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_1656 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1656 IPR036640 ABC transporter type 1, transmembrane domain superfamily YP_1656 IPR017871 ABC transporter, conserved site YP_1656 IPR003593 AAA+ ATPase domain YP_1656 IPR003439 ABC transporter-like YP_1656 IPR017938 Riboflavin synthase-like beta-barrel YP_1656 IPR007037 Siderophore-interacting protein, C-terminal domain YP_1656 IPR011527 ABC transporter type 1, transmembrane domain YP_1657 IPR011527 ABC transporter type 1, transmembrane domain YP_1657 IPR003593 AAA+ ATPase domain YP_1657 IPR036640 ABC transporter type 1, transmembrane domain superfamily YP_1657 IPR039421 Type I protein exporter YP_1657 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1657 IPR011917 ABC transporter, lipid A export, MsbA YP_1657 IPR017871 ABC transporter, conserved site YP_1657 IPR003439 ABC transporter-like YP_1658 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 YP_1658 IPR036259 MFS transporter superfamily YP_1658 IPR011701 Major facilitator superfamily YP_1659 IPR019999 Anthranilate synthase component I-like YP_1659 IPR019996 Salicylate synthase YP_1659 IPR005801 ADC synthase YP_1659 IPR015890 Chorismate-utilising enzyme, C-terminal YP_1660 IPR038488 Integrase, DNA-binding domain superfamily YP_1660 IPR002104 Integrase, catalytic domain YP_1660 IPR025166 Integrase, DNA-binding domain YP_1660 IPR010998 Integrase/recombinase, N-terminal YP_1660 IPR013762 Integrase-like, catalytic domain superfamily YP_1660 IPR011010 DNA breaking-rejoining enzyme, catalytic core YP_1661 IPR018046 Pili assembly chaperone, conserved site YP_1661 IPR016148 Pili assembly chaperone, C-terminal YP_1661 IPR001829 Pili assembly chaperone, bacterial YP_1661 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_1661 IPR008962 PapD-like superfamily YP_1661 IPR013783 Immunoglobulin-like fold YP_1661 IPR016147 Pili assembly chaperone, N-terminal YP_1663 IPR000015 Outer membrane usher protein YP_1663 IPR018030 Fimbrial membrane usher, conserved site YP_1663 IPR025949 PapC-like, C-terminal domain YP_1663 IPR042186 Outer membrane usher protein FimD, plug domain YP_1663 IPR037224 PapC, N-terminal domain superfamily YP_1663 IPR025885 PapC, N-terminal domain YP_1664 IPR016147 Pili assembly chaperone, N-terminal YP_1664 IPR018046 Pili assembly chaperone, conserved site YP_1664 IPR016148 Pili assembly chaperone, C-terminal YP_1664 IPR001829 Pili assembly chaperone, bacterial YP_1664 IPR013783 Immunoglobulin-like fold YP_1664 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_1664 IPR008962 PapD-like superfamily YP_1666 IPR036641 HPT domain superfamily YP_1666 IPR000700 PAS-associated, C-terminal YP_1666 IPR011006 CheY-like superfamily YP_1666 IPR003594 Histidine kinase/HSP90-like ATPase YP_1666 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_1666 IPR005467 Histidine kinase domain YP_1666 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_1666 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_1666 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_1666 IPR001789 Signal transduction response regulator, receiver domain YP_1666 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YP_1666 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_1666 IPR013767 PAS fold YP_1666 IPR035965 PAS domain superfamily YP_1666 IPR000014 PAS domain YP_1667 IPR011006 CheY-like superfamily YP_1667 IPR000792 Transcription regulator LuxR, C-terminal YP_1667 IPR016032 Signal transduction response regulator, C-terminal effector YP_1667 IPR001789 Signal transduction response regulator, receiver domain YP_1668 IPR037171 NagB/RpiA transferase-like YP_1668 IPR003702 Acetyl-CoA hydrolase/transferase YP_1668 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily YP_1668 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain YP_1669 IPR016790 Thiol ester hydratase, Rv0216, predicted YP_1669 IPR002539 MaoC-like dehydratase domain YP_1669 IPR029069 HotDog domain superfamily YP_1670 IPR005000 HpcH/HpaI aldolase/citrate lyase domain YP_1670 IPR011206 Citrate lyase beta subunit-like YP_1670 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YP_1670 IPR040442 Pyruvate kinase-like domain superfamily YP_1671 IPR005119 LysR, substrate-binding YP_1671 IPR000847 Transcription regulator HTH, LysR YP_1671 IPR037410 HTH-type transcriptional regulator BudR, PBP2 domain YP_1671 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1671 IPR036390 Winged helix DNA-binding domain superfamily YP_1675 IPR032466 Metal-dependent hydrolase YP_1675 IPR006680 Amidohydrolase-related YP_1677 IPR003667 NqrDE/RnfAE YP_1677 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E YP_1678 IPR015424 Pyridoxal phosphate-dependent transferase YP_1678 IPR004839 Aminotransferase, class I/classII YP_1678 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_1678 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_1679 IPR004841 Amino acid permease/ SLC12A domain YP_1679 IPR004840 Amino acid permease, conserved site YP_1680 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YP_1680 IPR037171 NagB/RpiA transferase-like YP_1680 IPR001034 DeoR-type HTH domain YP_1680 IPR036390 Winged helix DNA-binding domain superfamily YP_1680 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1680 IPR014036 DeoR C-terminal sensor domain YP_1682 IPR012338 Beta-lactamase/transpeptidase-like YP_1682 IPR015868 Glutaminase YP_1685 IPR004923 Iron permease FTR1/Fip1/EfeU YP_1686 IPR038482 Periplasmic metal-binding protein tp34-type superfamily YP_1686 IPR018470 Periplasmic metal-binding protein Tp34-type YP_1688 IPR025857 MacB-like periplasmic core domain YP_1688 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1688 IPR017911 ABC transporter, macrolide export, ATP-binding domain YP_1688 IPR017871 ABC transporter, conserved site YP_1688 IPR003439 ABC transporter-like YP_1688 IPR003838 ABC transporter permease protein domain YP_1688 IPR003593 AAA+ ATPase domain YP_1690 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1690 IPR025857 MacB-like periplasmic core domain YP_1690 IPR017911 ABC transporter, macrolide export, ATP-binding domain YP_1690 IPR017871 ABC transporter, conserved site YP_1690 IPR003439 ABC transporter-like YP_1690 IPR003838 ABC transporter permease protein domain YP_1690 IPR003593 AAA+ ATPase domain YP_1691 IPR013766 Thioredoxin domain YP_1691 IPR023555 Thiol-disulphide oxidoreductase ResA YP_1691 IPR036249 Thioredoxin-like superfamily YP_1691 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YP_1693 IPR014431 Tellurite resistance methyltransferase, TehB type-2 YP_1693 IPR004537 Tellurite resistance methyltransferase, TehB YP_1693 IPR015985 Tellurite resistance methyltransferase TehB-like domain YP_1693 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1693 IPR014710 RmlC-like jelly roll fold YP_1693 IPR015392 Domain of unknown function DUF1971 YP_1694 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YP_1694 IPR036005 Creatinase/aminopeptidase-like YP_1694 IPR000994 Peptidase M24 YP_1695 IPR019734 Tetratricopeptide repeat YP_1695 IPR011990 Tetratricopeptide-like helical domain superfamily YP_1695 IPR013026 Tetratricopeptide repeat-containing domain YP_1695 IPR023870 Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA YP_1696 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YP_1696 IPR002509 NodB homology domain YP_1696 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB YP_1696 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal YP_1697 IPR029044 Nucleotide-diphospho-sugar transferases YP_1697 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA YP_1697 IPR001173 Glycosyltransferase 2-like YP_1698 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD YP_1701 IPR001207 Transposase, mutator type YP_1702 IPR003714 PhoH-like protein YP_1702 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1703 IPR004837 Sodium/calcium exchanger membrane region YP_1703 IPR004713 Calcium/proton exchanger YP_1704 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain YP_1704 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing YP_1704 IPR042295 NarX-like, N-terminal domain superfamily YP_1704 IPR029095 NarX-like, N-terminal YP_1704 IPR005467 Histidine kinase domain YP_1704 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_1704 IPR003594 Histidine kinase/HSP90-like ATPase YP_1704 IPR003660 HAMP domain YP_1705 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1705 IPR015424 Pyridoxal phosphate-dependent transferase YP_1705 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_1705 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_1705 IPR000524 Transcription regulator HTH, GntR YP_1705 IPR036390 Winged helix DNA-binding domain superfamily YP_1705 IPR004839 Aminotransferase, class I/classII YP_1707 IPR004636 Acetylornithine/Succinylornithine transaminase family YP_1707 IPR005814 Aminotransferase class-III YP_1707 IPR015424 Pyridoxal phosphate-dependent transferase YP_1707 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_1707 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_1707 IPR026330 Succinylornithine transaminase YP_1707 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria YP_1708 IPR016181 Acyl-CoA N-acyltransferase YP_1708 IPR017650 Arginine N-succinyltransferase YP_1708 IPR007041 Arginine N-succinyltransferase AstA/AruG YP_1709 IPR016163 Aldehyde dehydrogenase, C-terminal YP_1709 IPR016161 Aldehyde/histidinol dehydrogenase YP_1709 IPR015590 Aldehyde dehydrogenase domain YP_1709 IPR016162 Aldehyde dehydrogenase, N-terminal YP_1709 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YP_1709 IPR017649 Succinylglutamate-semialdehyde dehydrogenase YP_1709 IPR016160 Aldehyde dehydrogenase, cysteine active site YP_1710 IPR007079 Succinylarginine dihydrolase YP_1710 IPR037031 Succinylarginine dihydrolase superfamily YP_1711 IPR016681 Succinylglutamate desuccinylase YP_1711 IPR007036 Succinylglutamate desuccinylase/aspartoacylase YP_1712 IPR001897 Porin, gammaproteobacterial YP_1712 IPR001702 Porin, Gram-negative type YP_1712 IPR013793 Porin, Gram-negative type, conserved site YP_1712 IPR023614 Porin domain superfamily YP_1712 IPR033900 Porin domain, Gram-negative type YP_1714 IPR011059 Metal-dependent hydrolase, composite domain superfamily YP_1714 IPR005920 Imidazolonepropionase YP_1714 IPR006680 Amidohydrolase-related YP_1714 IPR032466 Metal-dependent hydrolase YP_1716 IPR002611 IstB-like ATP-binding protein YP_1716 IPR003593 AAA+ ATPase domain YP_1716 IPR001270 ClpA/B family YP_1716 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1716 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_1717 IPR036397 Ribonuclease H superfamily YP_1717 IPR012337 Ribonuclease H-like superfamily YP_1717 IPR006120 Resolvase, HTH domain YP_1717 IPR001584 Integrase, catalytic core YP_1717 IPR017894 HTH domain, IS21 transposase-type YP_1719 IPR009950 Protein of unknown function DUF1480 YP_1722 IPR013783 Immunoglobulin-like fold YP_1722 IPR018046 Pili assembly chaperone, conserved site YP_1722 IPR016148 Pili assembly chaperone, C-terminal YP_1722 IPR016147 Pili assembly chaperone, N-terminal YP_1722 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_1722 IPR001829 Pili assembly chaperone, bacterial YP_1722 IPR008962 PapD-like superfamily YP_1726 IPR003399 Mce/MlaD YP_1727 IPR007498 Intermembrane transport protein PqiA-like YP_1727 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type YP_1727 IPR011031 Multihaem cytochrome YP_1728 IPR029016 GAF-like domain superfamily YP_1728 IPR003018 GAF domain YP_1728 IPR000614 Free Met sulfoxide reductase conserved site YP_1729 IPR035236 RNA chaperone ProQ, C-terminal YP_1729 IPR036442 ProQ/FinO domain superfamily YP_1729 IPR016103 ProQ/FinO domain YP_1729 IPR023529 RNA chaperone ProQ YP_1730 IPR020992 Tail specific protease, C-terminal YP_1730 IPR029045 ClpP/crotonase-like domain superfamily YP_1730 IPR001478 PDZ domain YP_1730 IPR036034 PDZ superfamily YP_1730 IPR004447 C-terminal-processing peptidase S41A YP_1730 IPR005151 Tail specific protease YP_1730 IPR040573 Tail specific protease, N-terminal domain YP_1731 IPR022919 Peptidase M48, protease HtpX, putative YP_1731 IPR001915 Peptidase M48 YP_1732 IPR008966 Adhesion domain superfamily YP_1732 IPR036937 Fimbrial-type adhesion domain superfamily YP_1732 IPR000259 Fimbrial-type adhesion domain YP_1733 IPR013783 Immunoglobulin-like fold YP_1733 IPR018046 Pili assembly chaperone, conserved site YP_1733 IPR016148 Pili assembly chaperone, C-terminal YP_1733 IPR001829 Pili assembly chaperone, bacterial YP_1733 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_1733 IPR008962 PapD-like superfamily YP_1733 IPR016147 Pili assembly chaperone, N-terminal YP_1734 IPR037224 PapC, N-terminal domain superfamily YP_1734 IPR025949 PapC-like, C-terminal domain YP_1734 IPR042186 Outer membrane usher protein FimD, plug domain YP_1734 IPR018030 Fimbrial membrane usher, conserved site YP_1734 IPR000015 Outer membrane usher protein YP_1734 IPR025885 PapC, N-terminal domain YP_1736 IPR016147 Pili assembly chaperone, N-terminal YP_1736 IPR016148 Pili assembly chaperone, C-terminal YP_1736 IPR001829 Pili assembly chaperone, bacterial YP_1736 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_1736 IPR008962 PapD-like superfamily YP_1736 IPR013783 Immunoglobulin-like fold YP_1736 IPR018046 Pili assembly chaperone, conserved site YP_1737 IPR011701 Major facilitator superfamily YP_1737 IPR020846 Major facilitator superfamily domain YP_1737 IPR036259 MFS transporter superfamily YP_1738 IPR015943 WD40/YVTN repeat-like-containing domain superfamily YP_1738 IPR027946 Oligogalacturonate lyase domain YP_1739 IPR005471 Transcription regulator IclR, N-terminal YP_1739 IPR036390 Winged helix DNA-binding domain superfamily YP_1739 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1739 IPR014757 Transcription regulator IclR, C-terminal YP_1739 IPR029016 GAF-like domain superfamily YP_1739 IPR011991 ArsR-like helix-turn-helix domain YP_1740 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily YP_1740 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YP_1740 IPR036366 PGBD superfamily YP_1740 IPR036365 PGBD-like superfamily YP_1742 IPR007404 LexA-binding, inner membrane-associated putative hydrolase YP_1742 IPR016956 Inner membrane protein YdjM YP_1743 IPR009331 Oligogalacturonate-specific porin YP_1744 IPR006059 Bacterial extracellular solute-binding protein YP_1745 IPR005116 Transport-associated OB, type 1 YP_1745 IPR003593 AAA+ ATPase domain YP_1745 IPR003439 ABC transporter-like YP_1745 IPR017871 ABC transporter, conserved site YP_1745 IPR040582 MalK, OB fold domain YP_1745 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1745 IPR008995 Molybdate/tungstate binding, C-terminal YP_1746 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1746 IPR035906 MetI-like superfamily YP_1747 IPR035906 MetI-like superfamily YP_1747 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1748 IPR010702 Periplasmic pectate lyase YP_1749 IPR020904 Short-chain dehydrogenase/reductase, conserved site YP_1749 IPR036291 NAD(P)-binding domain superfamily YP_1749 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase YP_1749 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1750 IPR007045 5-keto 4-deoxyuronate isomerase YP_1750 IPR011051 RmlC-like cupin domain superfamily YP_1750 IPR014710 RmlC-like jelly roll fold YP_1750 IPR021120 KduI/IolB isomerase YP_1750 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal YP_1752 IPR001207 Transposase, mutator type YP_1753 IPR008816 Glycine zipper 2TM domain YP_1754 IPR036101 CarD-like/TRCF domain superfamily YP_1754 IPR003711 CarD-like/TRCF domain YP_1754 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_1754 IPR001650 Helicase, C-terminal YP_1754 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1754 IPR037235 TRCF-like, C-terminal domain YP_1754 IPR005118 Transcription-repair-coupling factor, C-terminal domain YP_1754 IPR011545 DEAD/DEAH box helicase domain YP_1754 IPR041471 UvrB, interaction domain YP_1754 IPR004576 Transcription-repair coupling factor YP_1755 IPR025857 MacB-like periplasmic core domain YP_1755 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E YP_1755 IPR003838 ABC transporter permease protein domain YP_1756 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1756 IPR011924 Lipoprotein releasing system, ATP-binding protein YP_1756 IPR015854 ABC transporter, lipoprotein release, LolD YP_1756 IPR003439 ABC transporter-like YP_1756 IPR003593 AAA+ ATPase domain YP_1756 IPR017871 ABC transporter, conserved site YP_1757 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E YP_1757 IPR003838 ABC transporter permease protein domain YP_1757 IPR025857 MacB-like periplasmic core domain YP_1757 IPR011926 Lipoprotein-releasing system transmembrane protein LolE, gammaproteobacteria type YP_1758 IPR000600 ROK family YP_1759 IPR023505 N-acetyl-D-glucosamine kinase YP_1759 IPR000600 ROK family YP_1760 IPR026590 Sirtuin family, catalytic core domain YP_1760 IPR029035 DHS-like NAD/FAD-binding domain superfamily YP_1760 IPR003000 Sirtuin family YP_1760 IPR026591 Sirtuin, catalytic core small domain superfamily YP_1760 IPR027546 Sirtuin, class III YP_1761 IPR036264 Bacterial exopeptidase dimerisation domain YP_1761 IPR002933 Peptidase M20 YP_1761 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YP_1761 IPR010161 Peptidase M20B, tripeptide aminopeptidase YP_1761 IPR011650 Peptidase M20, dimerisation domain YP_1762 IPR039994 JmjC domain-containing YP_1762 IPR003347 JmjC domain YP_1763 IPR003594 Histidine kinase/HSP90-like ATPase YP_1763 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_1763 IPR015014 PhoQ Sensor YP_1763 IPR005467 Histidine kinase domain YP_1763 IPR038429 PhoQ Sensor superfamily YP_1763 IPR003660 HAMP domain YP_1763 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_1763 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_1764 IPR001789 Signal transduction response regulator, receiver domain YP_1764 IPR039420 Transcriptional regulatory protein WalR-like YP_1764 IPR001867 OmpR/PhoB-type DNA-binding domain YP_1764 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1764 IPR011006 CheY-like superfamily YP_1766 IPR004769 Adenylosuccinate lyase YP_1766 IPR008948 L-Aspartase-like YP_1766 IPR022761 Fumarate lyase, N-terminal YP_1766 IPR000362 Fumarate lyase family YP_1766 IPR020557 Fumarate lyase, conserved site YP_1766 IPR024083 Fumarase/histidase, N-terminal YP_1766 IPR013539 Adenylosuccinate lyase PurB, C-terminal YP_1767 IPR007451 High frequency lysogenization protein HflD YP_1767 IPR035932 HflD-like superfamily YP_1768 IPR023382 Adenine nucleotide alpha hydrolase-like domains YP_1768 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_1768 IPR004506 tRNA-specific 2-thiouridylase YP_1769 IPR000086 NUDIX hydrolase domain YP_1769 IPR033713 Phosphatase NudJ YP_1769 IPR015797 NUDIX hydrolase-like domain superfamily YP_1769 IPR020084 NUDIX hydrolase, conserved site YP_1769 IPR020476 NUDIX hydrolase YP_1770 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YP_1770 IPR020103 Pseudouridine synthase, catalytic domain superfamily YP_1770 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain YP_1770 IPR006145 Pseudouridine synthase, RsuA/RluA YP_1770 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YP_1771 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YP_1771 IPR024084 Isopropylmalate dehydrogenase-like domain YP_1771 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic YP_1772 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_1772 IPR001761 Periplasmic binding protein/LacI sugar binding domain YP_1772 IPR000843 LacI-type HTH domain YP_1772 IPR028082 Periplasmic binding protein-like I YP_1774 IPR004090 Chemotaxis methyl-accepting receptor YP_1774 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YP_1774 IPR013655 PAS fold-3 YP_1774 IPR035965 PAS domain superfamily YP_1774 IPR000014 PAS domain YP_1774 IPR001610 PAC motif YP_1774 IPR003660 HAMP domain YP_1775 IPR036291 NAD(P)-binding domain superfamily YP_1775 IPR008030 NmrA-like domain YP_1776 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1776 IPR002577 Helix-turn-helix, HxlR type YP_1776 IPR036390 Winged helix DNA-binding domain superfamily YP_1778 IPR029033 Histidine phosphatase superfamily YP_1778 IPR000560 Histidine phosphatase superfamily, clade-2 YP_1778 IPR033379 Histidine acid phosphatase active site YP_1779 IPR017704 Putative selenium-binding protein YdfZ YP_1781 IPR011991 ArsR-like helix-turn-helix domain YP_1781 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YP_1781 IPR000485 AsnC-type HTH domain YP_1781 IPR011008 Dimeric alpha-beta barrel YP_1781 IPR036390 Winged helix DNA-binding domain superfamily YP_1781 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1781 IPR019888 Transcription regulator AsnC-type YP_1781 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YP_1783 IPR019713 Inner membrane protein YlaC YP_1784 IPR020843 Polyketide synthase, enoylreductase domain YP_1784 IPR013968 Polyketide synthase, ketoreductase domain YP_1784 IPR020807 Polyketide synthase, dehydratase domain YP_1784 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YP_1784 IPR032821 Ketoacyl-synthetase, C-terminal extension YP_1784 IPR013149 Alcohol dehydrogenase, C-terminal YP_1784 IPR013154 Alcohol dehydrogenase, N-terminal YP_1784 IPR011032 GroES-like superfamily YP_1784 IPR018201 Beta-ketoacyl synthase, active site YP_1784 IPR042104 Polyketide synthase, dehydratase domain superfamily YP_1784 IPR014031 Beta-ketoacyl synthase, C-terminal YP_1784 IPR036291 NAD(P)-binding domain superfamily YP_1784 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YP_1784 IPR009081 Phosphopantetheine binding ACP domain YP_1784 IPR016039 Thiolase-like YP_1784 IPR014043 Acyl transferase YP_1784 IPR036736 ACP-like superfamily YP_1784 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YP_1784 IPR014030 Beta-ketoacyl synthase, N-terminal YP_1784 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YP_1785 IPR008979 Galactose-binding-like domain superfamily YP_1785 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily YP_1785 IPR006104 Glycosyl hydrolases family 2, sugar binding domain YP_1785 IPR017853 Glycoside hydrolase superfamily YP_1785 IPR004199 Beta galactosidase small chain/ domain 5 YP_1785 IPR006103 Glycoside hydrolase family 2, catalytic domain YP_1785 IPR023230 Glycoside hydrolase, family 2, conserved site YP_1785 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase YP_1785 IPR023232 Glycoside hydrolase, family 2, active site YP_1785 IPR014718 Glycoside hydrolase-type carbohydrate-binding YP_1785 IPR006101 Glycoside hydrolase, family 2 YP_1785 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich YP_1785 IPR011013 Galactose mutarotase-like domain superfamily YP_1785 IPR013783 Immunoglobulin-like fold YP_1785 IPR032312 Beta-galactosidase, domain 4 YP_1786 IPR019844 Cold-shock (CSD) domain YP_1786 IPR002059 Cold-shock protein, DNA-binding YP_1786 IPR011129 Cold shock domain YP_1786 IPR012156 Cold shock, CspA YP_1786 IPR012340 Nucleic acid-binding, OB-fold YP_1787 IPR019717 Dextransucrase DSRB YP_1790 IPR003416 MgtC/SapB/SrpB/YhiD family YP_1791 IPR018303 P-type ATPase, phosphorylation site YP_1791 IPR008250 P-type ATPase, A domain superfamily YP_1791 IPR004014 Cation-transporting P-type ATPase, N-terminal YP_1791 IPR006068 Cation-transporting P-type ATPase, C-terminal YP_1791 IPR023214 HAD superfamily YP_1791 IPR006415 P-type ATPase, subfamily IIIB YP_1791 IPR001757 P-type ATPase YP_1791 IPR023298 P-type ATPase, transmembrane domain superfamily YP_1791 IPR023299 P-type ATPase, cytoplasmic domain N YP_1791 IPR036412 HAD-like superfamily YP_1793 IPR007944 Flagellar transcriptional activator FlhC YP_1794 IPR000540 Flagellar motor protein MotA, conserved site YP_1794 IPR022522 Flagellar motor stator, MotA YP_1794 IPR002898 MotA/TolQ/ExbB proton channel YP_1795 IPR006665 OmpA-like domain YP_1795 IPR036737 OmpA-like domain superfamily YP_1795 IPR025713 Motility protein B, N-terminal domain YP_1796 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YP_1796 IPR003594 Histidine kinase/HSP90-like ATPase YP_1796 IPR004105 Histidine kinase CheA-like, homodimeric domain YP_1796 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily YP_1796 IPR036641 HPT domain superfamily YP_1796 IPR015162 CheY binding YP_1796 IPR002545 CheW-like domain YP_1796 IPR036061 CheW-like domain superfamily YP_1796 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_1796 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_1796 IPR005467 Histidine kinase domain YP_1796 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_1796 IPR035891 CheY-binding domain of CheA YP_1797 IPR002545 CheW-like domain YP_1797 IPR039315 Chemotaxis protein CheW YP_1797 IPR036061 CheW-like domain superfamily YP_1798 IPR011701 Major facilitator superfamily YP_1798 IPR036259 MFS transporter superfamily YP_1798 IPR020846 Major facilitator superfamily domain YP_1799 IPR006056 RidA family YP_1799 IPR019897 RidA, conserved site YP_1799 IPR006175 YjgF/YER057c/UK114 family YP_1799 IPR035959 RutC-like superfamily YP_1801 IPR039446 Transcriptional regulator DauR-like YP_1801 IPR039445 Transcriptional regulator DauR-like, HTH domain YP_1801 IPR013559 YheO-like YP_1802 IPR001207 Transposase, mutator type YP_1803 IPR012332 P22 tailspike-like, C-terminal domain superfamily YP_1803 IPR011050 Pectin lyase fold/virulence factor YP_1803 IPR036709 Autotransporter beta-domain superfamily YP_1803 IPR013425 Autotransporter-associated beta strand repeat YP_1803 IPR006315 Outer membrane autotransporter barrel YP_1803 IPR005546 Autotransporter beta-domain YP_1806 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YP_1806 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YP_1806 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YP_1806 IPR004090 Chemotaxis methyl-accepting receptor YP_1806 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YP_1806 IPR003660 HAMP domain YP_1807 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YP_1807 IPR004090 Chemotaxis methyl-accepting receptor YP_1807 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YP_1807 IPR003660 HAMP domain YP_1807 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YP_1807 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YP_1808 IPR026024 Chemotaxis protein methyltransferase CheR YP_1808 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal YP_1808 IPR000780 MCP methyltransferase, CheR-type YP_1808 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal YP_1808 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily YP_1808 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1809 IPR001789 Signal transduction response regulator, receiver domain YP_1809 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase YP_1809 IPR011006 CheY-like superfamily YP_1809 IPR035909 Methylesterase CheB, C-terminal YP_1809 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type YP_1810 IPR011006 CheY-like superfamily YP_1810 IPR001789 Signal transduction response regulator, receiver domain YP_1811 IPR007439 Chemotaxis phosphatase, CheZ YP_1812 IPR036366 PGBD superfamily YP_1812 IPR036365 PGBD-like superfamily YP_1812 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YP_1812 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily YP_1815 IPR001207 Transposase, mutator type YP_1821 IPR003593 AAA+ ATPase domain YP_1821 IPR001270 ClpA/B family YP_1821 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_1821 IPR002611 IstB-like ATP-binding protein YP_1821 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1822 IPR017894 HTH domain, IS21 transposase-type YP_1822 IPR001584 Integrase, catalytic core YP_1822 IPR006120 Resolvase, HTH domain YP_1822 IPR012337 Ribonuclease H-like superfamily YP_1822 IPR036397 Ribonuclease H superfamily YP_1824 IPR023512 Deaminase MtaD/DadD YP_1824 IPR032466 Metal-dependent hydrolase YP_1824 IPR011059 Metal-dependent hydrolase, composite domain superfamily YP_1824 IPR006680 Amidohydrolase-related YP_1825 IPR011051 RmlC-like cupin domain superfamily YP_1825 IPR010282 Uncharacterised protein family HutD/Ves YP_1825 IPR023482 Uncharacterised protein family Ves YP_1825 IPR014710 RmlC-like jelly roll fold YP_1828 IPR001509 NAD-dependent epimerase/dehydratase YP_1828 IPR036291 NAD(P)-binding domain superfamily YP_1835 IPR001207 Transposase, mutator type YP_1839 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1839 IPR016584 Methyltransferase VrtF-like YP_1839 IPR013217 Methyltransferase type 12 YP_1840 IPR020904 Short-chain dehydrogenase/reductase, conserved site YP_1840 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1840 IPR036291 NAD(P)-binding domain superfamily YP_1847 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_1847 IPR006290 Heavy metal sensor kinase YP_1847 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_1847 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_1847 IPR005467 Histidine kinase domain YP_1847 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_1847 IPR003594 Histidine kinase/HSP90-like ATPase YP_1847 IPR003660 HAMP domain YP_1848 IPR039420 Transcriptional regulatory protein WalR-like YP_1848 IPR011006 CheY-like superfamily YP_1848 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1848 IPR001789 Signal transduction response regulator, receiver domain YP_1848 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response YP_1848 IPR001867 OmpR/PhoB-type DNA-binding domain YP_1849 IPR029058 Alpha/Beta hydrolase fold YP_1849 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain YP_1858 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 YP_1858 IPR006073 GTP binding domain YP_1858 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1858 IPR004095 TGS YP_1858 IPR012676 TGS-like YP_1858 IPR023192 TGS-like domain superfamily YP_1858 IPR013029 YchF, C-terminal domain YP_1858 IPR041706 YchF, N-terminal YP_1858 IPR031167 OBG-type guanine nucleotide-binding (G) domain YP_1858 IPR012675 Beta-grasp domain superfamily YP_1859 IPR036416 Peptidyl-tRNA hydrolase superfamily YP_1859 IPR018171 Peptidyl-tRNA hydrolase, conserved site YP_1859 IPR001328 Peptidyl-tRNA hydrolase YP_1860 IPR019698 Protein of unknown function DUF2583 YP_1861 IPR000836 Phosphoribosyltransferase domain YP_1861 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type YP_1861 IPR029057 Phosphoribosyltransferase-like YP_1861 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site YP_1861 IPR005946 Ribose-phosphate pyrophosphokinase YP_1861 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain YP_1862 IPR036554 GHMP kinase, C-terminal domain superfamily YP_1862 IPR013750 GHMP kinase, C-terminal domain YP_1862 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_1862 IPR020568 Ribosomal protein S5 domain 2-type fold YP_1862 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_1862 IPR006204 GHMP kinase N-terminal domain YP_1863 IPR029046 Lipoprotein localisation LolA/LolB/LppX YP_1863 IPR004565 Outer membrane lipoprotein LolB YP_1864 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily YP_1864 IPR036291 NAD(P)-binding domain superfamily YP_1864 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain YP_1864 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal YP_1864 IPR018214 Glutamyl-tRNA reductase, conserved site YP_1864 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily YP_1864 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_1864 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase YP_1865 IPR004373 Peptide chain release factor 1 YP_1865 IPR000352 Peptide chain release factor class I YP_1865 IPR005139 Peptide chain release factor YP_1866 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YP_1866 IPR004556 Methyltransferase HemK-like YP_1866 IPR025714 Methyltransferase domain YP_1866 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific YP_1866 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1866 IPR040758 Release factor glutamine methyltransferase, N-terminal domain YP_1867 IPR007360 Invasion gene expression up-regulator, SirB YP_1868 IPR032698 Protein SirB1, N-terminal YP_1869 IPR006269 3-deoxy-8-phosphooctulonate synthase YP_1869 IPR006218 DAHP synthetase I/KDSA YP_1869 IPR013785 Aldolase-type TIM barrel YP_1870 IPR036513 STAS domain superfamily YP_1870 IPR002645 STAS domain YP_1870 IPR001902 SLC26A/SulP transporter YP_1870 IPR011547 SLC26A/SulP transporter domain YP_1870 IPR018045 Sulphate anion transporter, conserved site YP_1872 IPR030395 Glycerophosphodiester phosphodiesterase domain YP_1872 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YP_1874 IPR035906 MetI-like superfamily YP_1874 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1875 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1875 IPR035906 MetI-like superfamily YP_1877 IPR036515 Transposase IS200-like superfamily YP_1877 IPR002686 Transposase IS200-like YP_1878 IPR030395 Glycerophosphodiester phosphodiesterase domain YP_1878 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YP_1879 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1879 IPR000600 ROK family YP_1879 IPR022687 DTXR-type HTH domain YP_1879 IPR036390 Winged helix DNA-binding domain superfamily YP_1880 IPR016195 Polymerase/histidinol phosphatase-like YP_1880 IPR004013 PHP domain YP_1880 IPR003141 Polymerase/histidinol phosphatase, N-terminal YP_1880 IPR023710 Probable phosphatase YcdX YP_1881 IPR036411 TorD-like superfamily YP_1881 IPR026269 Tat proofreading chaperone DmsD-type YP_1881 IPR020945 DMSO/Nitrate reductase chaperone YP_1882 IPR010835 Protein of unknown function DUF1439 YP_1883 IPR022855 Multidrug resistance protein MdtH YP_1883 IPR011701 Major facilitator superfamily YP_1883 IPR020846 Major facilitator superfamily domain YP_1883 IPR036259 MFS transporter superfamily YP_1884 IPR016181 Acyl-CoA N-acyltransferase YP_1884 IPR000182 GNAT domain YP_1885 IPR036390 Winged helix DNA-binding domain superfamily YP_1885 IPR007432 Protein of unknown function DUF480 YP_1885 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1886 IPR004268 Peptidoglycan biosynthesis protein MurJ YP_1887 IPR027282 Two partner secretion pathway transporter YP_1887 IPR005565 Haemolysin activator HlyB, C-terminal YP_1887 IPR013686 Polypeptide-transport-associated, ShlB-type YP_1887 IPR034746 POTRA domain YP_1887 IPR035251 ShlB, POTRA domain YP_1889 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YP_1889 IPR001278 Arginine-tRNA ligase YP_1889 IPR005148 Arginyl tRNA synthetase N-terminal domain YP_1889 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily YP_1889 IPR035684 Arginyl-tRNA synthetase, catalytic core domain YP_1889 IPR008909 DALR anticodon binding YP_1889 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_1889 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YP_1890 IPR010393 Protein of unknown function DUF991 YP_1890 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YP_1891 IPR036822 Copper homeostasis (CutC) domain superfamily YP_1891 IPR023648 Copper homeostasis CutC domain YP_1891 IPR005627 Copper homeostasis protein CutC YP_1892 IPR010017 tRNA U34 carboxymethyltransferase YP_1892 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1892 IPR027555 tRNA (mo5U34)-methyltransferase-like YP_1893 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1893 IPR041698 Methyltransferase domain 25 YP_1893 IPR005271 Carboxy-S-adenosyl-L-methionine synthase YP_1894 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein YP_1894 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily YP_1895 IPR036520 UPF0759 superfamily YP_1895 IPR002763 Protein of unknown function DUF72 YP_1896 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YP_1896 IPR029351 GAD domain YP_1896 IPR006195 Aminoacyl-tRNA synthetase, class II YP_1896 IPR004524 Aspartate-tRNA ligase, type 1 YP_1896 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb YP_1896 IPR012340 Nucleic acid-binding, OB-fold YP_1896 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YP_1896 IPR004115 GAD-like domain superfamily YP_1897 IPR020084 NUDIX hydrolase, conserved site YP_1897 IPR003564 Dihydroneopterin triphosphate diphosphatase YP_1897 IPR000086 NUDIX hydrolase domain YP_1897 IPR015797 NUDIX hydrolase-like domain superfamily YP_1898 IPR029072 YebC-like YP_1898 IPR017856 Integrase-like, N-terminal YP_1898 IPR002876 Transcriptional regulator TACO1-like YP_1898 IPR026564 Transcriptional regulator TACO1-like, domain 3 YP_1899 IPR012337 Ribonuclease H-like superfamily YP_1899 IPR036397 Ribonuclease H superfamily YP_1899 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site YP_1899 IPR002176 Crossover junction endodeoxyribonuclease RuvC YP_1900 IPR000085 Bacterial DNA recombination protein RuvA YP_1900 IPR010994 RuvA domain 2-like YP_1900 IPR012340 Nucleic acid-binding, OB-fold YP_1900 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial YP_1900 IPR011114 Holliday junction DNA helicase RuvA, C-terminal YP_1900 IPR036267 RuvA, C-terminal domain superfamily YP_1900 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YP_1901 IPR008824 RuvB-like P-loop domain YP_1901 IPR036390 Winged helix DNA-binding domain superfamily YP_1901 IPR003593 AAA+ ATPase domain YP_1901 IPR041445 RuvB, AAA lid domain YP_1901 IPR004605 DNA helicase, Holliday junction RuvB-type YP_1901 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1901 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1901 IPR008823 RuvB C-terminal winged helix domain YP_1902 IPR037294 ABC transporter, BtuC-like YP_1902 IPR001626 ABC transporter, TroCD-like YP_1903 IPR017882 Zinc import ATP-binding protein ZnuC YP_1903 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1903 IPR003439 ABC transporter-like YP_1903 IPR003593 AAA+ ATPase domain YP_1904 IPR035520 High-affinity zinc uptake system protein ZnuA YP_1904 IPR006127 Periplasmic solute binding protein, ZnuA-like YP_1905 IPR011055 Duplicated hybrid motif YP_1905 IPR018392 LysM domain YP_1905 IPR013731 Opacity-associated protein A, N-terminal YP_1905 IPR016047 Peptidase M23 YP_1906 IPR011921 Lipid A biosynthesis myristoyltransferase YP_1906 IPR004960 Bacterial lipid A biosynthesis acyltransferase YP_1907 IPR001697 Pyruvate kinase YP_1907 IPR011037 Pyruvate kinase-like, insert domain superfamily YP_1907 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YP_1907 IPR040442 Pyruvate kinase-like domain superfamily YP_1907 IPR036918 Pyruvate kinase, C-terminal domain superfamily YP_1907 IPR018209 Pyruvate kinase, active site YP_1907 IPR015793 Pyruvate kinase, barrel YP_1907 IPR015795 Pyruvate kinase, C-terminal YP_1907 IPR015806 Pyruvate kinase, insert domain superfamily YP_1908 IPR000281 Helix-turn-helix protein RpiR YP_1908 IPR035472 RpiR-like, SIS domain YP_1908 IPR009057 Homeobox-like domain superfamily YP_1908 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1908 IPR001347 Sugar isomerase (SIS) YP_1909 IPR036291 NAD(P)-binding domain superfamily YP_1909 IPR019796 Glucose-6-phosphate dehydrogenase, active site YP_1909 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal YP_1909 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding YP_1909 IPR001282 Glucose-6-phosphate dehydrogenase YP_1910 IPR031337 KDPG/KHG aldolase, active site 1 YP_1910 IPR013785 Aldolase-type TIM barrel YP_1910 IPR000887 KDPG/KHG aldolase YP_1910 IPR031338 KDPG/KHG aldolase, active site 2 YP_1911 IPR023740 Spermidine export protein MdtJ YP_1911 IPR000390 Small multidrug resistance protein family YP_1912 IPR023737 Spermidine export protein MdtI YP_1912 IPR000390 Small multidrug resistance protein family YP_1913 IPR035709 RutC family, YoaB-like YP_1913 IPR035959 RutC-like superfamily YP_1913 IPR019897 RidA, conserved site YP_1913 IPR006175 YjgF/YER057c/UK114 family YP_1914 IPR006555 ATP-dependent helicase, C-terminal YP_1914 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_1914 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1914 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type YP_1914 IPR006935 Helicase/UvrB, N-terminal YP_1915 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB YP_1915 IPR000905 Gcp-like domain YP_1916 IPR004658 Outer membrane lipoprotein Slp YP_1917 IPR042099 AMP-dependent synthetase-like superfamily YP_1917 IPR000873 AMP-dependent synthetase/ligase YP_1917 IPR020845 AMP-binding, conserved site YP_1917 IPR025110 AMP-binding enzyme, C-terminal domain YP_1918 IPR006292 Ribonuclease D YP_1918 IPR002562 3'-5' exonuclease domain YP_1918 IPR010997 HRDC-like superfamily YP_1918 IPR002121 HRDC domain YP_1918 IPR012337 Ribonuclease H-like superfamily YP_1918 IPR036397 Ribonuclease H superfamily YP_1919 IPR036707 Cell division topological specificity factor MinE superfamily YP_1919 IPR005527 Cell division topological specificity factor MinE YP_1920 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain YP_1920 IPR010223 ATP binding protein MinD, bacterial-type YP_1920 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1920 IPR025501 ATP binding protein MinD YP_1921 IPR005526 Septum formation inhibitor MinC, C-terminal YP_1921 IPR007874 Septum formation inhibitor MinC, N-terminal YP_1921 IPR013033 Septum formation inhibitor MinC YP_1921 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal YP_1921 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily YP_1921 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily YP_1923 IPR038068 YcgL-like superfamily YP_1923 IPR027354 YcgL domain YP_1924 IPR031304 Transglycosylase SLT domain 2 YP_1924 IPR023346 Lysozyme-like domain superfamily YP_1924 IPR011757 Lytic transglycosylase MltB YP_1925 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YP_1925 IPR011234 Fumarylacetoacetase-like, C-terminal YP_1926 IPR005358 Putative zinc- or iron-chelating domain containing protein YP_1926 IPR008228 Uncharacterised conserved protein UCP006173 YP_1928 IPR017894 HTH domain, IS21 transposase-type YP_1928 IPR001584 Integrase, catalytic core YP_1928 IPR006120 Resolvase, HTH domain YP_1928 IPR012337 Ribonuclease H-like superfamily YP_1928 IPR036397 Ribonuclease H superfamily YP_1929 IPR003593 AAA+ ATPase domain YP_1929 IPR001270 ClpA/B family YP_1929 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_1929 IPR002611 IstB-like ATP-binding protein YP_1929 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1933 IPR008711 Recombinase NinB YP_1933 IPR036619 NinB superfamily YP_1935 IPR010534 Bacteriophage 933W, GpQ YP_1939 IPR001207 Transposase, mutator type YP_1941 IPR016454 Cysteine desulfurase YP_1941 IPR000192 Aminotransferase class V domain YP_1941 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YP_1941 IPR015424 Pyridoxal phosphate-dependent transferase YP_1941 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_1941 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_1941 IPR010240 Cysteine desulfurase IscS YP_1944 IPR023380 DsbB-like superfamily YP_1944 IPR022920 Disulphide bond formation protein DsbB YP_1944 IPR003752 Disulphide bond formation protein DsbB/BdbC YP_1945 IPR004671 Na+/H+ antiporter NhaB YP_1946 IPR028374 FadR, C-terminal domain YP_1946 IPR014178 Fatty acid response transcription factor FadR YP_1946 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_1946 IPR000524 Transcription regulator HTH, GntR YP_1946 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1946 IPR036390 Winged helix DNA-binding domain superfamily YP_1947 IPR007390 Sporulation stage V, protein R YP_1948 IPR006076 FAD dependent oxidoreductase YP_1948 IPR036188 FAD/NAD(P)-binding domain superfamily YP_1948 IPR023080 D-amino acid dehydrogenase DadA YP_1949 IPR011701 Major facilitator superfamily YP_1949 IPR020846 Major facilitator superfamily domain YP_1949 IPR036259 MFS transporter superfamily YP_1949 IPR023697 Multidrug resistance protein MdtL YP_1950 IPR003829 Pirin, N-terminal domain YP_1950 IPR008778 Pirin, C-terminal domain YP_1950 IPR014710 RmlC-like jelly roll fold YP_1950 IPR011051 RmlC-like cupin domain superfamily YP_1950 IPR012093 Pirin YP_1951 IPR005119 LysR, substrate-binding YP_1951 IPR000847 Transcription regulator HTH, LysR YP_1951 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1951 IPR036390 Winged helix DNA-binding domain superfamily YP_1953 IPR006698 Uncharacterised protein family UPF0229 YP_1954 IPR016230 Serine-protein kinase, PrkA YP_1954 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1954 IPR010650 PrkA C-terminal domain YP_1954 IPR013153 PrkA AAA domain YP_1955 IPR010583 MltA-interacting MipA YP_1956 IPR014718 Glycoside hydrolase-type carbohydrate-binding YP_1956 IPR011013 Galactose mutarotase-like domain superfamily YP_1956 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase YP_1956 IPR025532 Glucose-6-phosphate 1-epimerase YP_1957 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YP_1957 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site YP_1957 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_1957 IPR036291 NAD(P)-binding domain superfamily YP_1957 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I YP_1957 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family YP_1958 IPR011057 Mss4-like superfamily YP_1958 IPR028427 Peptide methionine sulfoxide reductase YP_1958 IPR002579 Peptide methionine sulphoxide reductase MrsB YP_1959 IPR009749 Protein of unknown function DUF1315 YP_1960 IPR000868 Isochorismatase-like YP_1960 IPR036380 Isochorismatase-like superfamily YP_1961 IPR037152 L-asparaginase, N-terminal domain superfamily YP_1961 IPR027473 L-asparaginase, C-terminal YP_1961 IPR040919 Asparaginase/glutaminase, C-terminal YP_1961 IPR027475 Asparaginase/glutaminase, active site 2 YP_1961 IPR020827 Asparaginase/glutaminase, active site 1 YP_1961 IPR006034 Asparaginase/glutaminase-like YP_1961 IPR036152 Asparaginase/glutaminase-like superfamily YP_1961 IPR006033 Type I L-asparaginase family YP_1961 IPR041725 Type I (cytosolic) L-asparaginase YP_1961 IPR027474 L-asparaginase, N-terminal YP_1962 IPR004634 Peptidase S49, protease IV YP_1962 IPR029045 ClpP/crotonase-like domain superfamily YP_1962 IPR004635 Peptidase S49, SppA YP_1962 IPR002142 Peptidase S49 YP_1962 IPR033854 Signal peptide peptidase A YP_1963 IPR029479 Nitroreductase YP_1963 IPR026021 Putative NAD(P)H nitroreductase YdjA-like YP_1963 IPR000415 Nitroreductase-like YP_1964 IPR010918 PurM-like, C-terminal domain YP_1964 IPR036676 PurM-like, C-terminal domain superfamily YP_1964 IPR016188 PurM-like, N-terminal domain YP_1964 IPR036921 PurM-like, N-terminal domain superfamily YP_1964 IPR023061 Selenophosphate synthetase, class I YP_1964 IPR004536 Selenophosphate synthetase YP_1965 IPR023406 DNA topoisomerase, type IA, active site YP_1965 IPR000380 DNA topoisomerase, type IA YP_1965 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YP_1965 IPR003601 DNA topoisomerase, type IA, domain 2 YP_1965 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YP_1965 IPR013497 DNA topoisomerase, type IA, central YP_1965 IPR023405 DNA topoisomerase, type IA, core domain YP_1965 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YP_1965 IPR006171 TOPRIM domain YP_1965 IPR005738 DNA topoisomerase III YP_1965 IPR003602 DNA topoisomerase, type IA, DNA-binding domain YP_1965 IPR034144 DNA topoisomerase 3-like, TOPRIM domain YP_1966 IPR009971 Protein of unknown function DUF1496 YP_1967 IPR020084 NUDIX hydrolase, conserved site YP_1967 IPR015797 NUDIX hydrolase-like domain superfamily YP_1967 IPR000086 NUDIX hydrolase domain YP_1967 IPR020476 NUDIX hydrolase YP_1968 IPR037493 Exodeoxyribonuclease III-like YP_1968 IPR004808 AP endonuclease 1 YP_1968 IPR020847 AP endonuclease 1, binding site YP_1968 IPR020848 AP endonuclease 1, conserved site YP_1968 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YP_1968 IPR005135 Endonuclease/exonuclease/phosphatase YP_1969 IPR005119 LysR, substrate-binding YP_1969 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1969 IPR036390 Winged helix DNA-binding domain superfamily YP_1969 IPR000847 Transcription regulator HTH, LysR YP_1970 IPR002912 ACT domain YP_1970 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain YP_1970 IPR002376 Formyl transferase, N-terminal YP_1970 IPR004810 Formyltetrahydrofolate deformylase YP_1970 IPR036477 Formyl transferase, N-terminal domain superfamily YP_1971 IPR023006 Uncharacterised protein family UPF0225 YP_1971 IPR032710 NTF2-like domain superfamily YP_1971 IPR004027 SEC-C motif YP_1972 IPR028616 Regulator of RpoS YP_1972 IPR011006 CheY-like superfamily YP_1972 IPR039420 Transcriptional regulatory protein WalR-like YP_1972 IPR036457 PPM-type phosphatase domain superfamily YP_1972 IPR001789 Signal transduction response regulator, receiver domain YP_1973 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily YP_1973 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation YP_1973 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_1973 IPR017476 UDP-glucose/GDP-mannose dehydrogenase YP_1973 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal YP_1973 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YP_1973 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type YP_1973 IPR036291 NAD(P)-binding domain superfamily YP_1974 IPR027454 Histone-like protein H-NS, N-terminal YP_1974 IPR001801 Histone-like protein H-NS YP_1974 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily YP_1974 IPR027444 Histone-like protein H-NS, C-terminal domain YP_1975 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1975 IPR001267 Thymidine kinase YP_1975 IPR020633 Thymidine kinase, conserved site YP_1976 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YP_1976 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YP_1976 IPR016162 Aldehyde dehydrogenase, N-terminal YP_1976 IPR034789 Bifunctional aldehyde-alcohol dehydrogenase, C-terminal domain YP_1976 IPR016161 Aldehyde/histidinol dehydrogenase YP_1976 IPR039697 Iron-type alcohol dehydrogenase-like YP_1976 IPR015590 Aldehyde dehydrogenase domain YP_1976 IPR016163 Aldehyde dehydrogenase, C-terminal YP_1976 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase YP_1978 IPR002771 Multiple antibiotic resistance (MarC)-related YP_1979 IPR023765 Solute-binding protein family 5, conserved site YP_1979 IPR030678 Peptide/nickel binding protein, MppA-type YP_1979 IPR000914 Solute-binding protein family 5 domain YP_1979 IPR039424 Solute-binding protein family 5 YP_1980 IPR035906 MetI-like superfamily YP_1980 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1981 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YP_1981 IPR035906 MetI-like superfamily YP_1981 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_1982 IPR003439 ABC transporter-like YP_1982 IPR003593 AAA+ ATPase domain YP_1982 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1982 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YP_1982 IPR017871 ABC transporter, conserved site YP_1983 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YP_1983 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1983 IPR003593 AAA+ ATPase domain YP_1983 IPR003439 ABC transporter-like YP_1983 IPR017871 ABC transporter, conserved site YP_1985 IPR036763 Putative dsDNA mimic superfamily YP_1985 IPR007376 dsDNA mimic, putative YP_1986 IPR022924 Cardiolipin synthase YP_1986 IPR001736 Phospholipase D/Transphosphatidylase YP_1986 IPR027379 Cardiolipin synthase N-terminal YP_1986 IPR030840 Cardiolipin synthase A YP_1986 IPR025202 Phospholipase D-like domain YP_1988 IPR000758 Virulence-related outer membrane protein YP_1988 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_1988 IPR027385 Outer membrane protein beta-barrel domain YP_1991 IPR005545 YCII-related YP_1991 IPR011008 Dimeric alpha-beta barrel YP_1992 IPR037682 TonB, C-terminal YP_1992 IPR006260 TonB/TolA, C-terminal YP_1992 IPR003538 Gram-negative bacterial TonB protein YP_1993 IPR001207 Transposase, mutator type YP_1994 IPR006683 Thioesterase domain YP_1994 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase YP_1994 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain YP_1994 IPR029069 HotDog domain superfamily YP_1995 IPR006008 Intracellular septation protein A YP_1997 IPR009627 Uncharacterised protein family UPF0259 YP_1999 IPR005618 Outer membrane protein, OmpW YP_1999 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_2001 IPR013785 Aldolase-type TIM barrel YP_2001 IPR011060 Ribulose-phosphate binding barrel YP_2001 IPR018204 Tryptophan synthase, alpha chain, active site YP_2001 IPR002028 Tryptophan synthase, alpha chain YP_2002 IPR006653 Tryptophan synthase, beta chain, conserved site YP_2002 IPR006654 Tryptophan synthase, beta chain YP_2002 IPR023026 Tryptophan synthase beta chain/beta chain-like YP_2002 IPR001926 Pyridoxal-phosphate dependent enzyme YP_2002 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_2003 IPR013785 Aldolase-type TIM barrel YP_2003 IPR013798 Indole-3-glycerol phosphate synthase YP_2003 IPR001468 Indole-3-glycerol phosphate synthase, conserved site YP_2003 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) YP_2003 IPR011060 Ribulose-phosphate binding barrel YP_2004 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily YP_2004 IPR005940 Anthranilate phosphoribosyl transferase YP_2004 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily YP_2004 IPR000312 Glycosyl transferase, family 3 YP_2004 IPR017459 Glycosyl transferase family 3, N-terminal domain YP_2005 IPR017926 Glutamine amidotransferase YP_2005 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain YP_2005 IPR029062 Class I glutamine amidotransferase-like YP_2006 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial YP_2006 IPR006805 Anthranilate synthase component I, N-terminal YP_2006 IPR005801 ADC synthase YP_2006 IPR015890 Chorismate-utilising enzyme, C-terminal YP_2006 IPR019999 Anthranilate synthase component I-like YP_2008 IPR003141 Polymerase/histidinol phosphatase, N-terminal YP_2008 IPR004013 PHP domain YP_2008 IPR016195 Polymerase/histidinol phosphatase-like YP_2009 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YP_2009 IPR006070 YrdC-like domain YP_2010 IPR020103 Pseudouridine synthase, catalytic domain superfamily YP_2010 IPR006145 Pseudouridine synthase, RsuA/RluA YP_2010 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YP_2010 IPR036986 RNA-binding S4 domain superfamily YP_2010 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YP_2010 IPR002942 RNA-binding S4 domain YP_2011 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR YP_2011 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2012 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2012 IPR020904 Short-chain dehydrogenase/reductase, conserved site YP_2012 IPR036291 NAD(P)-binding domain superfamily YP_2013 IPR029045 ClpP/crotonase-like domain superfamily YP_2013 IPR013703 Peptidase S49, N-terminal proteobacteria YP_2013 IPR002142 Peptidase S49 YP_2014 IPR038191 YciN superfamily YP_2014 IPR019633 Protein of unknown function DUF2498 YP_2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YP_2016 IPR000380 DNA topoisomerase, type IA YP_2016 IPR003601 DNA topoisomerase, type IA, domain 2 YP_2016 IPR023406 DNA topoisomerase, type IA, active site YP_2016 IPR013497 DNA topoisomerase, type IA, central YP_2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YP_2016 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YP_2016 IPR034149 DNA topoisomerase 1, TOPRIM domain YP_2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain YP_2016 IPR013498 DNA topoisomerase, type IA, zn finger YP_2016 IPR005733 DNA topoisomerase I, bacterial-type YP_2016 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type YP_2016 IPR028612 DNA topoisomerase I, type IA YP_2016 IPR006171 TOPRIM domain YP_2016 IPR023405 DNA topoisomerase, type IA, core domain YP_2017 IPR036390 Winged helix DNA-binding domain superfamily YP_2017 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2017 IPR005119 LysR, substrate-binding YP_2017 IPR000847 Transcription regulator HTH, LysR YP_2019 IPR018136 Aconitase family, 4Fe-4S cluster binding site YP_2019 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YP_2019 IPR006249 Aconitase/Iron-responsive element-binding protein 2 YP_2019 IPR036008 Aconitase, iron-sulfur domain YP_2019 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YP_2019 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain YP_2019 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain YP_2020 IPR036144 RibA-like superfamily YP_2020 IPR000926 GTP cyclohydrolase II, RibA YP_2020 IPR032677 GTP cyclohydrolase II YP_2022 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YP_2022 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YP_2023 IPR010445 Lipopolysaccharide assembly protein A domain YP_2023 IPR032906 Lipopolysaccharide assembly protein A YP_2024 IPR013026 Tetratricopeptide repeat-containing domain YP_2024 IPR041166 LapB, rubredoxin metal binding domain YP_2024 IPR019734 Tetratricopeptide repeat YP_2024 IPR011990 Tetratricopeptide-like helical domain superfamily YP_2024 IPR030865 Lipopolysaccharide assembly protein B YP_2026 IPR018089 Orotidine 5'-phosphate decarboxylase, active site YP_2026 IPR014732 Orotidine 5'-phosphate decarboxylase YP_2026 IPR001754 Orotidine 5'-phosphate decarboxylase domain YP_2026 IPR013785 Aldolase-type TIM barrel YP_2026 IPR011060 Ribulose-phosphate binding barrel YP_2027 IPR001950 SUI1 domain YP_2027 IPR005872 Archaeal/bacterial translation initiation factor SUI1 YP_2027 IPR036877 SUI1 domain superfamily YP_2029 IPR004661 L-ribulose-5-phosphate 4-epimerase YP_2029 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YP_2029 IPR001303 Class II aldolase/adducin N-terminal YP_2029 IPR033748 L-ribulose-5-phosphate 4-epimerase AraD YP_2031 IPR018225 Transaldolase, active site YP_2031 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase YP_2031 IPR001585 Transaldolase/Fructose-6-phosphate aldolase YP_2031 IPR023001 Fructose-6-phosphate aldolase YP_2031 IPR013785 Aldolase-type TIM barrel YP_2031 IPR033919 Transaldolase/Fructose-6-phosphate aldolase, archaeal/bacterial YP_2032 IPR007423 Selenoprotein, putative YP_2033 IPR025299 CstA, C-terminal domain YP_2033 IPR003706 CstA, N-terminal domain YP_2034 IPR040476 RNase II/RNase R, cold shock domain YP_2034 IPR011129 Cold shock domain YP_2034 IPR004476 Ribonuclease II/ribonuclease R YP_2034 IPR012340 Nucleic acid-binding, OB-fold YP_2034 IPR013223 Ribonuclease B, N-terminal OB domain YP_2034 IPR003029 S1 domain YP_2034 IPR001900 Ribonuclease II/R YP_2034 IPR011804 Ribonuclease II YP_2034 IPR022966 Ribonuclease II/R, conserved site YP_2035 IPR011701 Major facilitator superfamily YP_2035 IPR020846 Major facilitator superfamily domain YP_2035 IPR036259 MFS transporter superfamily YP_2036 IPR036291 NAD(P)-binding domain superfamily YP_2036 IPR001509 NAD-dependent epimerase/dehydratase YP_2037 IPR004035 Endonuclease III, iron-sulphur binding site YP_2037 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif YP_2037 IPR011257 DNA glycosylase YP_2037 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal YP_2037 IPR005759 Endonuclease III YP_2037 IPR004036 Endonuclease III-like, conserved site-2 YP_2037 IPR000445 Helix-hairpin-helix motif YP_2037 IPR003265 HhH-GPD domain YP_2038 IPR010968 Ion-translocating oxidoreductase complex subunit E YP_2038 IPR003667 NqrDE/RnfAE YP_2039 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG YP_2039 IPR007329 FMN-binding YP_2040 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD YP_2040 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D YP_2041 IPR020449 Transcription regulator HTH, AraC- type YP_2041 IPR011256 Regulatory factor, effector binding domain superfamily YP_2041 IPR018062 HTH domain AraC-type, conserved site YP_2041 IPR018060 DNA binding HTH domain, AraC-type YP_2041 IPR009057 Homeobox-like domain superfamily YP_2041 IPR029442 GyrI-like small molecule binding domain YP_2041 IPR010499 Bacterial transcription activator, effector binding YP_2042 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2042 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2042 IPR019554 Soluble ligand binding domain YP_2042 IPR009051 Alpha-helical ferredoxin YP_2042 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC YP_2042 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain YP_2042 IPR026902 RnfC Barrel sandwich hybrid domain YP_2042 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily YP_2043 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria YP_2043 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB YP_2043 IPR011005 Dihydropteroate synthase-like YP_2043 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2043 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2043 IPR007202 4Fe-4S domain YP_2044 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA YP_2044 IPR003667 NqrDE/RnfAE YP_2045 IPR019690 Protein of unknown function DUF2569 YP_2048 IPR039421 Type I protein exporter YP_2048 IPR039395 Peptidase C39-like A YP_2048 IPR005074 Peptidase C39, bacteriocin processing YP_2048 IPR011527 ABC transporter type 1, transmembrane domain YP_2048 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2048 IPR036640 ABC transporter type 1, transmembrane domain superfamily YP_2048 IPR003439 ABC transporter-like YP_2048 IPR017871 ABC transporter, conserved site YP_2048 IPR010132 ATPase, type I secretion system, HlyB YP_2048 IPR003593 AAA+ ATPase domain YP_2049 IPR038583 L-arabinose isomerase, N-terminal domain superfamily YP_2049 IPR024664 L-arabinose isomerase, C-terminal YP_2049 IPR004216 L-fucose/L-arabinose isomerase, C-terminal YP_2049 IPR003762 L-arabinose isomerase YP_2049 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily YP_2050 IPR005929 Ribulokinase YP_2050 IPR018485 Carbohydrate kinase, FGGY, C-terminal YP_2051 IPR001761 Periplasmic binding protein/LacI sugar binding domain YP_2051 IPR028082 Periplasmic binding protein-like I YP_2051 IPR026266 L-arabinose-binding periplasmic protein YP_2052 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2052 IPR017917 ABC transporter, arabinose import, ATP-binding protein, AraG YP_2052 IPR003439 ABC transporter-like YP_2052 IPR003593 AAA+ ATPase domain YP_2052 IPR017871 ABC transporter, conserved site YP_2053 IPR001851 ABC transporter, permease YP_2055 IPR036291 NAD(P)-binding domain superfamily YP_2055 IPR004104 Oxidoreductase, C-terminal YP_2055 IPR000683 Oxidoreductase, N-terminal YP_2056 IPR038770 Sodium/solute symporter superfamily YP_2056 IPR016833 Putative sodium bile acid cotransporter YP_2059 IPR010352 Protein of unknown function DUF945 YP_2060 IPR011051 RmlC-like cupin domain superfamily YP_2060 IPR014710 RmlC-like jelly roll fold YP_2060 IPR018050 Phosphomannose isomerase, type I, conserved site YP_2060 IPR016305 Mannose-6-phosphate isomerase YP_2060 IPR001250 Mannose-6-phosphate isomerase, type I YP_2061 IPR018951 Fumarase C, C-terminal YP_2061 IPR022761 Fumarate lyase, N-terminal YP_2061 IPR008948 L-Aspartase-like YP_2061 IPR000362 Fumarate lyase family YP_2061 IPR024083 Fumarase/histidase, N-terminal YP_2061 IPR005677 Fumarate hydratase, class II YP_2061 IPR020557 Fumarate lyase, conserved site YP_2062 IPR036384 Replication terminator Tus superfamily YP_2062 IPR036381 Replication terminator Tus, domain 1 YP_2062 IPR008865 DNA replication terminus site-binding protein YP_2064 IPR036390 Winged helix DNA-binding domain superfamily YP_2064 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2064 IPR000600 ROK family YP_2065 IPR004472 Dethiobiotin synthase BioD YP_2065 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2066 IPR001807 Chloride channel, voltage gated YP_2066 IPR014743 Chloride channel, core YP_2066 IPR023790 Chloride channel, voltage-gated, ClcB YP_2067 IPR000843 LacI-type HTH domain YP_2067 IPR028082 Periplasmic binding protein-like I YP_2067 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_2071 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_2071 IPR010067 Aliphatic sulfonates-binding protein YP_2071 IPR015168 SsuA/THI5-like YP_2072 IPR035906 MetI-like superfamily YP_2072 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2073 IPR003439 ABC transporter-like YP_2073 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2073 IPR003593 AAA+ ATPase domain YP_2074 IPR000845 Nucleoside phosphorylase domain YP_2074 IPR011271 AMP nucleosidase YP_2074 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily YP_2074 IPR018953 AMP nucleoside phosphorylase, N-terminal YP_2074 IPR035994 Nucleoside phosphorylase superfamily YP_2079 IPR000399 TPP-binding enzyme, conserved site YP_2079 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_2079 IPR012846 Acetolactate synthase, large subunit, biosynthetic YP_2079 IPR039368 Acetolactate synthase large subunit, TPP binding domain YP_2079 IPR029035 DHS-like NAD/FAD-binding domain superfamily YP_2079 IPR029061 Thiamin diphosphate-binding fold YP_2079 IPR012000 Thiamine pyrophosphate enzyme, central domain YP_2079 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YP_2080 IPR004789 Acetolactate synthase, small subunit YP_2080 IPR039557 AHAS, ACT domain YP_2080 IPR002912 ACT domain YP_2081 IPR036412 HAD-like superfamily YP_2081 IPR006439 HAD hydrolase, subfamily IA YP_2081 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB YP_2081 IPR041492 Haloacid dehalogenase-like hydrolase YP_2081 IPR023214 HAD superfamily YP_2081 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YP_2083 IPR001952 Alkaline phosphatase YP_2083 IPR018299 Alkaline phosphatase, active site YP_2083 IPR017850 Alkaline-phosphatase-like, core domain superfamily YP_2084 IPR023546 Methylated-DNA--protein-cysteine methyltransferase YP_2084 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2084 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily YP_2084 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain YP_2084 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site YP_2084 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YP_2084 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain YP_2085 IPR018490 Cyclic nucleotide-binding-like YP_2085 IPR000595 Cyclic nucleotide-binding domain YP_2085 IPR012318 Crp-type HTH domain YP_2085 IPR018335 Transcription regulator HTH, Crp-type, conserved site YP_2085 IPR014710 RmlC-like jelly roll fold YP_2085 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2085 IPR036390 Winged helix DNA-binding domain superfamily YP_2086 IPR006016 UspA YP_2087 IPR034300 NADP transhydrogenase beta-like domain YP_2087 IPR029035 DHS-like NAD/FAD-binding domain superfamily YP_2087 IPR012136 NADP transhydrogenase, beta subunit YP_2088 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 YP_2088 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal YP_2088 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain YP_2088 IPR036291 NAD(P)-binding domain superfamily YP_2088 IPR026255 NAD(P) transhydrogenase, alpha subunit YP_2088 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 YP_2088 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal YP_2090 IPR036275 YdgH-like superfamily YP_2090 IPR025539 YdgH protein YP_2090 IPR025543 Dodecin-like YP_2090 IPR010854 Domain of unknown function DUF1471 YP_2091 IPR004754 Amino acid antiporter YP_2091 IPR002293 Amino acid/polyamine transporter I YP_2093 IPR011006 CheY-like superfamily YP_2093 IPR001867 OmpR/PhoB-type DNA-binding domain YP_2093 IPR016032 Signal transduction response regulator, C-terminal effector YP_2093 IPR001789 Signal transduction response regulator, receiver domain YP_2093 IPR039420 Transcriptional regulatory protein WalR-like YP_2093 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2095 IPR006120 Resolvase, HTH domain YP_2095 IPR036397 Ribonuclease H superfamily YP_2095 IPR012337 Ribonuclease H-like superfamily YP_2095 IPR017894 HTH domain, IS21 transposase-type YP_2095 IPR001584 Integrase, catalytic core YP_2096 IPR002611 IstB-like ATP-binding protein YP_2096 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_2096 IPR003593 AAA+ ATPase domain YP_2096 IPR001270 ClpA/B family YP_2096 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2097 IPR001333 Peptidase M32, carboxypeptidase Taq YP_2098 IPR002686 Transposase IS200-like YP_2098 IPR036515 Transposase IS200-like superfamily YP_2099 IPR022385 Rhs repeat-associated core YP_2099 IPR025968 YwqJ-like deaminase YP_2099 IPR041508 Toxin complex C-like repeat YP_2102 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily YP_2102 IPR023480 Uncharacterised protein family UPF0312/YceI YP_2102 IPR007372 Lipid/polyisoprenoid-binding, YceI-like YP_2103 IPR016174 Di-haem cytochrome, transmembrane YP_2103 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YP_2106 IPR001254 Serine proteases, trypsin domain YP_2106 IPR018114 Serine proteases, trypsin family, histidine active site YP_2106 IPR009003 Peptidase S1, PA clan YP_2106 IPR033116 Serine proteases, trypsin family, serine active site YP_2106 IPR008256 Peptidase S1B YP_2109 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_2109 IPR011709 Domain of unknown function DUF1605 YP_2109 IPR001650 Helicase, C-terminal YP_2109 IPR011545 DEAD/DEAH box helicase domain YP_2109 IPR003593 AAA+ ATPase domain YP_2109 IPR024590 RNA helicase HrpA, C-terminal YP_2109 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2109 IPR007502 Helicase-associated domain YP_2109 IPR010222 RNA helicase HrpA YP_2110 IPR023048 NADH-azoreductase, FMN-dependent YP_2110 IPR029039 Flavoprotein-like superfamily YP_2110 IPR003680 Flavodoxin-like fold YP_2111 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2111 IPR007324 Sugar-binding domain, putative YP_2111 IPR037171 NagB/RpiA transferase-like YP_2111 IPR012318 Crp-type HTH domain YP_2112 IPR013118 Mannitol dehydrogenase, C-terminal YP_2112 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YP_2112 IPR036291 NAD(P)-binding domain superfamily YP_2112 IPR013131 Mannitol dehydrogenase, N-terminal YP_2112 IPR000669 Mannitol dehydrogenase YP_2112 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YP_2113 IPR008309 Uncharacterised conserved protein UCP025560 YP_2114 IPR021730 Dicarboxylate transport YP_2115 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_2115 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YP_2115 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YP_2115 IPR036291 NAD(P)-binding domain superfamily YP_2115 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YP_2116 IPR038670 HslJ-like superfamily YP_2116 IPR005184 Domain of unknown function DUF306, Meta/HslJ YP_2117 IPR005590 Protein of unknown function DUF333 YP_2118 IPR003416 MgtC/SapB/SrpB/YhiD family YP_2119 IPR000390 Small multidrug resistance protein family YP_2120 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II YP_2120 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal YP_2120 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain YP_2120 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2120 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YP_2120 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain YP_2120 IPR011895 Pyruvate-flavodoxin oxidoreductase YP_2120 IPR029061 Thiamin diphosphate-binding fold YP_2120 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain YP_2120 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2120 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_2120 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily YP_2121 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase YP_2121 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type YP_2121 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal YP_2121 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_2122 IPR036514 SGNH hydrolase superfamily YP_2122 IPR013830 SGNH hydrolase-type esterase domain YP_2122 IPR029058 Alpha/Beta hydrolase fold YP_2122 IPR013094 Alpha/beta hydrolase fold-3 YP_2125 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB YP_2125 IPR023714 Zinc transport protein ZntB YP_2126 IPR000914 Solute-binding protein family 5 domain YP_2126 IPR030678 Peptide/nickel binding protein, MppA-type YP_2126 IPR023765 Solute-binding protein family 5, conserved site YP_2126 IPR039424 Solute-binding protein family 5 YP_2127 IPR000834 Peptidase M14, carboxypeptidase A YP_2128 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YP_2128 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_2128 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site YP_2128 IPR029065 Enolase C-terminal domain-like YP_2128 IPR029017 Enolase-like, N-terminal YP_2128 IPR036849 Enolase-like, C-terminal domain superfamily YP_2128 IPR034603 Dipeptide epimerase YP_2129 IPR018219 Thiol peroxidase conserved site YP_2129 IPR013740 Redoxin YP_2129 IPR002065 Thiol peroxidase Tpx YP_2129 IPR036249 Thioredoxin-like superfamily YP_2129 IPR013766 Thioredoxin domain YP_2130 IPR036515 Transposase IS200-like superfamily YP_2130 IPR002686 Transposase IS200-like YP_2131 IPR025944 Sigma-54 interaction domain, conserved site YP_2131 IPR002078 RNA polymerase sigma factor 54 interaction domain YP_2131 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YP_2131 IPR002912 ACT domain YP_2131 IPR009057 Homeobox-like domain superfamily YP_2131 IPR003593 AAA+ ATPase domain YP_2131 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YP_2131 IPR035965 PAS domain superfamily YP_2131 IPR000014 PAS domain YP_2131 IPR030828 TyrR family, helix-turn-helix domain YP_2131 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2134 IPR006507 Uncharacterised protein family UPF0283 YP_2134 IPR021147 Protein of unknown function DUF697 YP_2135 IPR007413 Protein of unknown function DUF463, YcjX-like protein YP_2137 IPR007168 Phage shock protein, PspC, N-terminal YP_2137 IPR014320 Phage shock protein, PspC YP_2138 IPR009554 Phage shock protein B YP_2139 IPR014319 Phage shock protein, PspA YP_2139 IPR007157 PspA/IM30 YP_2140 IPR014317 Transcription activator PspF YP_2140 IPR009057 Homeobox-like domain superfamily YP_2140 IPR003593 AAA+ ATPase domain YP_2140 IPR002197 DNA binding HTH domain, Fis-type YP_2140 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2140 IPR002078 RNA polymerase sigma factor 54 interaction domain YP_2140 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YP_2140 IPR025944 Sigma-54 interaction domain, conserved site YP_2141 IPR002686 Transposase IS200-like YP_2141 IPR036515 Transposase IS200-like superfamily YP_2144 IPR030678 Peptide/nickel binding protein, MppA-type YP_2144 IPR039424 Solute-binding protein family 5 YP_2144 IPR023765 Solute-binding protein family 5, conserved site YP_2144 IPR000914 Solute-binding protein family 5 domain YP_2145 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2145 IPR035906 MetI-like superfamily YP_2146 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YP_2146 IPR035906 MetI-like superfamily YP_2146 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2147 IPR003439 ABC transporter-like YP_2147 IPR003593 AAA+ ATPase domain YP_2147 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YP_2147 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2148 IPR003439 ABC transporter-like YP_2148 IPR003593 AAA+ ATPase domain YP_2148 IPR017871 ABC transporter, conserved site YP_2148 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2149 IPR029032 AhpD-like YP_2150 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A YP_2150 IPR036259 MFS transporter superfamily YP_2150 IPR005279 Dipeptide/tripeptide permease YP_2150 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site YP_2150 IPR000109 Proton-dependent oligopeptide transporter family YP_2151 IPR006977 Yip1 domain YP_2152 IPR020317 Uncharacterised protein family YjbD YP_2153 IPR036249 Thioredoxin-like superfamily YP_2153 IPR004046 Glutathione S-transferase, C-terminal YP_2153 IPR004045 Glutathione S-transferase, N-terminal YP_2153 IPR040079 Glutathione Transferase family YP_2153 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YP_2153 IPR010987 Glutathione S-transferase, C-terminal-like YP_2154 IPR004625 Pyridoxine kinase YP_2154 IPR023685 Pyridoxal kinase PdxY YP_2154 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase YP_2154 IPR029056 Ribokinase-like YP_2155 IPR002307 Tyrosine-tRNA ligase YP_2155 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 YP_2155 IPR024088 Tyrosine-tRNA ligase, bacterial-type YP_2155 IPR036986 RNA-binding S4 domain superfamily YP_2155 IPR002942 RNA-binding S4 domain YP_2155 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_2155 IPR002305 Aminoacyl-tRNA synthetase, class Ic YP_2155 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YP_2156 IPR012349 FMN-binding split barrel YP_2156 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal YP_2156 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative YP_2156 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site YP_2156 IPR000659 Pyridoxamine 5'-phosphate oxidase YP_2157 IPR036328 C-type lysozyme inhibitor superfamily YP_2157 IPR018660 C-type lysozyme inhibitor YP_2158 IPR005338 Anhydro-N-acetylmuramic acid kinase YP_2159 IPR008816 Glycine zipper 2TM domain YP_2160 IPR036390 Winged helix DNA-binding domain superfamily YP_2160 IPR000835 MarR-type HTH domain YP_2160 IPR023187 Transcriptional regulator MarR-type, conserved site YP_2160 IPR023071 Transcriptional regulator, SlyA YP_2160 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2161 IPR020471 Aldo/keto reductase YP_2161 IPR023210 NADP-dependent oxidoreductase domain YP_2161 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_2162 IPR010710 Protein of unknown function DUF1289 YP_2163 IPR012549 Phosphoethanolamine transferase, N-terminal YP_2163 IPR040423 Phosphoethanolamine transferase YP_2163 IPR000917 Sulfatase, N-terminal YP_2163 IPR017850 Alkaline-phosphatase-like, core domain superfamily YP_2164 IPR009057 Homeobox-like domain superfamily YP_2164 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YP_2164 IPR011075 Tetracyclin repressor-like, C-terminal domain YP_2164 IPR001647 DNA-binding HTH domain, TetR-type YP_2165 IPR013785 Aldolase-type TIM barrel YP_2165 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_2166 IPR041508 Toxin complex C-like repeat YP_2166 IPR025968 YwqJ-like deaminase YP_2166 IPR022385 Rhs repeat-associated core YP_2167 IPR004361 Glyoxalase I YP_2167 IPR018146 Glyoxalase I, conserved site YP_2167 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YP_2167 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YP_2167 IPR037523 Vicinal oxygen chelate (VOC) domain YP_2168 IPR036397 Ribonuclease H superfamily YP_2168 IPR012337 Ribonuclease H-like superfamily YP_2168 IPR005987 Ribonuclease T YP_2168 IPR013520 Exonuclease, RNase T/DNA polymerase III YP_2169 IPR033658 Glutaredoxin, PICOT-like YP_2169 IPR036249 Thioredoxin-like superfamily YP_2169 IPR004480 Monothiol glutaredoxin-related YP_2169 IPR002109 Glutaredoxin YP_2169 IPR014434 Monothiol glutaredoxin YP_2171 IPR038765 Papain-like cysteine peptidase superfamily YP_2171 IPR000064 Endopeptidase, NLPC/P60 domain YP_2172 IPR001189 Manganese/iron superoxide dismutase YP_2172 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily YP_2172 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily YP_2172 IPR019831 Manganese/iron superoxide dismutase, N-terminal YP_2172 IPR019832 Manganese/iron superoxide dismutase, C-terminal YP_2172 IPR019833 Manganese/iron superoxide dismutase, binding site YP_2173 IPR000843 LacI-type HTH domain YP_2173 IPR023588 Transcription regulator HTH, PurR YP_2173 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_2173 IPR028082 Periplasmic binding protein-like I YP_2174 IPR036390 Winged helix DNA-binding domain superfamily YP_2174 IPR000847 Transcription regulator HTH, LysR YP_2174 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2174 IPR005119 LysR, substrate-binding YP_2175 IPR020846 Major facilitator superfamily domain YP_2175 IPR011701 Major facilitator superfamily YP_2175 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YP_2175 IPR036259 MFS transporter superfamily YP_2176 IPR003333 Mycolic acid cyclopropane synthase YP_2176 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_2177 IPR017938 Riboflavin synthase-like beta-barrel YP_2177 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily YP_2177 IPR001783 Lumazine-binding protein YP_2177 IPR026017 Lumazine-binding domain YP_2179 IPR002528 Multi antimicrobial extrusion protein YP_2179 IPR022913 Multidrug resistance protein MdtK YP_2180 IPR015806 Pyruvate kinase, insert domain superfamily YP_2180 IPR018209 Pyruvate kinase, active site YP_2180 IPR015793 Pyruvate kinase, barrel YP_2180 IPR015795 Pyruvate kinase, C-terminal YP_2180 IPR036918 Pyruvate kinase, C-terminal domain superfamily YP_2180 IPR040442 Pyruvate kinase-like domain superfamily YP_2180 IPR001697 Pyruvate kinase YP_2180 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YP_2180 IPR011037 Pyruvate kinase-like, insert domain superfamily YP_2181 IPR016367 Murein-lipoprotein YP_2181 IPR006817 Lipoprotein leucine-zipper YP_2182 IPR036515 Transposase IS200-like superfamily YP_2182 IPR002686 Transposase IS200-like YP_2184 IPR036397 Ribonuclease H superfamily YP_2184 IPR012337 Ribonuclease H-like superfamily YP_2184 IPR006120 Resolvase, HTH domain YP_2184 IPR001584 Integrase, catalytic core YP_2184 IPR017894 HTH domain, IS21 transposase-type YP_2185 IPR003593 AAA+ ATPase domain YP_2185 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2185 IPR002611 IstB-like ATP-binding protein YP_2185 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_2185 IPR001270 ClpA/B family YP_2186 IPR003808 Fe-S metabolism associated domain, SufE-like YP_2186 IPR023939 Cysteine desulfuration protein SufE YP_2187 IPR000192 Aminotransferase class V domain YP_2187 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YP_2187 IPR015424 Pyridoxal phosphate-dependent transferase YP_2187 IPR010970 Cysteine desulfurase, SufS YP_2187 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_2187 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_2188 IPR011542 SUF system FeS cluster assembly, SufD YP_2188 IPR037284 SUF system FeS cluster assembly, SufBD superfamily YP_2188 IPR000825 SUF system FeS cluster assembly, SufBD YP_2189 IPR010230 FeS cluster assembly SUF system, ATPase SufC YP_2189 IPR017871 ABC transporter, conserved site YP_2189 IPR003439 ABC transporter-like YP_2189 IPR003593 AAA+ ATPase domain YP_2189 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2190 IPR037284 SUF system FeS cluster assembly, SufBD superfamily YP_2190 IPR000825 SUF system FeS cluster assembly, SufBD YP_2190 IPR010231 SUF system FeS cluster assembly, SufB YP_2191 IPR000361 FeS cluster biogenesis YP_2191 IPR016092 FeS cluster insertion protein YP_2191 IPR017870 FeS cluster insertion, C-terminal, conserved site YP_2191 IPR011298 FeS assembly scaffold SufA YP_2191 IPR035903 HesB-like domain superfamily YP_2193 IPR006683 Thioesterase domain YP_2193 IPR029069 HotDog domain superfamily YP_2193 IPR003736 Phenylacetic acid degradation-related domain YP_2193 IPR030863 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, MenI YP_2194 IPR009051 Alpha-helical ferredoxin YP_2194 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2194 IPR016164 FAD-linked oxidase-like, C-terminal YP_2194 IPR036318 FAD-binding, type PCMH-like superfamily YP_2194 IPR016166 FAD-binding domain, PCMH-type YP_2194 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2194 IPR004113 FAD-linked oxidase, C-terminal YP_2194 IPR006094 FAD linked oxidase, N-terminal YP_2195 IPR002549 Transmembrane protein TqsA-like YP_2196 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding YP_2196 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YP_2196 IPR018274 PEP-utilising enzyme, active site YP_2196 IPR006319 Phosphoenolpyruvate synthase YP_2196 IPR000121 PEP-utilising enzyme, C-terminal YP_2196 IPR023151 PEP-utilising enzyme, conserved site YP_2196 IPR036637 Phosphohistidine domain superfamily YP_2196 IPR040442 Pyruvate kinase-like domain superfamily YP_2196 IPR013815 ATP-grasp fold, subdomain 1 YP_2196 IPR008279 PEP-utilising enzyme, mobile domain YP_2197 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain superfamily YP_2197 IPR026530 Phosphoenolpyruvate synthase regulatory protein YP_2197 IPR005177 Bifunctional kinase-pyrophosphorylase YP_2198 IPR006219 DHAP synthase, class 1 YP_2198 IPR006218 DAHP synthetase I/KDSA YP_2198 IPR013785 Aldolase-type TIM barrel YP_2200 IPR004562 Lipoyltransferase/lipoate-protein ligase YP_2200 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain YP_2200 IPR023741 Lipoate-protein ligase A YP_2200 IPR019491 Lipoate protein ligase, C-terminal YP_2201 IPR038765 Papain-like cysteine peptidase superfamily YP_2201 IPR000064 Endopeptidase, NLPC/P60 domain YP_2203 IPR000390 Small multidrug resistance protein family YP_2203 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF YP_2204 IPR000390 Small multidrug resistance protein family YP_2204 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE YP_2204 IPR000620 EamA domain YP_2205 IPR003342 Glycosyl transferase family 39/83 YP_2205 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase YP_2206 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YP_2206 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable YP_2206 IPR002509 NodB homology domain YP_2207 IPR036477 Formyl transferase, N-terminal domain superfamily YP_2207 IPR011034 Formyl transferase-like, C-terminal domain superfamily YP_2207 IPR036291 NAD(P)-binding domain superfamily YP_2207 IPR001509 NAD-dependent epimerase/dehydratase YP_2207 IPR021168 Bifunctional polymyxin resistance protein, ArnA YP_2207 IPR002376 Formyl transferase, N-terminal YP_2207 IPR005793 Formyl transferase, C-terminal YP_2208 IPR001173 Glycosyltransferase 2-like YP_2208 IPR029044 Nucleotide-diphospho-sugar transferases YP_2208 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase YP_2209 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_2209 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB YP_2209 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_2209 IPR015424 Pyridoxal phosphate-dependent transferase YP_2209 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YP_2210 IPR003593 AAA+ ATPase domain YP_2210 IPR003439 ABC transporter-like YP_2210 IPR017871 ABC transporter, conserved site YP_2210 IPR023693 ABC transporter, vitamin B12, BtuD YP_2210 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2211 IPR000889 Glutathione peroxidase YP_2211 IPR029759 Glutathione peroxidase active site YP_2211 IPR036249 Thioredoxin-like superfamily YP_2211 IPR029760 Glutathione peroxidase conserved site YP_2211 IPR033674 Thioredoxin/glutathione peroxidase BtuE YP_2212 IPR037294 ABC transporter, BtuC-like YP_2212 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC YP_2212 IPR000522 ABC transporter, permease protein, BtuC-like YP_2214 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily YP_2214 IPR020816 Histone-like DNA-binding protein, conserved site YP_2214 IPR005684 Integration host factor, alpha subunit YP_2214 IPR000119 Histone-like DNA-binding protein YP_2215 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit YP_2215 IPR012340 Nucleic acid-binding, OB-fold YP_2215 IPR005121 Ferrodoxin-fold anticodon-binding domain YP_2215 IPR009061 Putative DNA-binding domain superfamily YP_2215 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain YP_2215 IPR002547 tRNA-binding domain YP_2215 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain YP_2215 IPR005147 tRNA synthetase, B5-domain YP_2215 IPR005146 B3/B4 tRNA-binding domain YP_2215 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 YP_2215 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily YP_2216 IPR002319 Phenylalanyl-tRNA synthetase YP_2216 IPR006195 Aminoacyl-tRNA synthetase, class II YP_2216 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm YP_2216 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial YP_2216 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal YP_2216 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit YP_2218 IPR005813 Ribosomal protein L20 YP_2218 IPR035566 Ribosomal protein L20, C-terminal YP_2219 IPR021137 Ribosomal protein L35 YP_2219 IPR018265 Ribosomal protein L35, conserved site YP_2219 IPR001706 Ribosomal protein L35, non-mitochondrial YP_2219 IPR037229 Ribosomal protein L35 superfamily YP_2220 IPR019813 Translation initiation factor 3, conserved site YP_2220 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily YP_2220 IPR019814 Translation initiation factor 3, N-terminal YP_2220 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily YP_2220 IPR001288 Translation initiation factor 3 YP_2220 IPR019815 Translation initiation factor 3, C-terminal YP_2221 IPR012947 Threonyl/alanyl tRNA synthetase, SAD YP_2221 IPR004154 Anticodon-binding YP_2221 IPR033728 Threonine-tRNA ligase catalytic core domain YP_2221 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily YP_2221 IPR002320 Threonine-tRNA ligase, class IIa YP_2221 IPR012676 TGS-like YP_2221 IPR004095 TGS YP_2221 IPR012675 Beta-grasp domain superfamily YP_2221 IPR036621 Anticodon-binding domain superfamily YP_2221 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) YP_2221 IPR006195 Aminoacyl-tRNA synthetase, class II YP_2222 IPR025309 KTSC domain YP_2225 IPR002771 Multiple antibiotic resistance (MarC)-related YP_2226 IPR008258 Transglycosylase SLT domain 1 YP_2226 IPR000189 Prokaryotic transglycosylase, active site YP_2226 IPR023346 Lysozyme-like domain superfamily YP_2226 IPR023946 Endo-type membrane-bound lytic murein transglycosylase A YP_2227 IPR006128 Adhesion lipoprotein YP_2227 IPR006129 Adhesin B YP_2227 IPR006127 Periplasmic solute binding protein, ZnuA-like YP_2228 IPR003593 AAA+ ATPase domain YP_2228 IPR017871 ABC transporter, conserved site YP_2228 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2228 IPR003439 ABC transporter-like YP_2229 IPR037294 ABC transporter, BtuC-like YP_2229 IPR001626 ABC transporter, TroCD-like YP_2230 IPR001626 ABC transporter, TroCD-like YP_2230 IPR037294 ABC transporter, BtuC-like YP_2232 IPR025229 YniB-like protein YP_2233 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YP_2233 IPR023214 HAD superfamily YP_2233 IPR041492 Haloacid dehalogenase-like hydrolase YP_2233 IPR006439 HAD hydrolase, subfamily IA YP_2233 IPR036412 HAD-like superfamily YP_2234 IPR001207 Transposase, mutator type YP_2237 IPR023753 FAD/NAD(P)-binding domain YP_2237 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2238 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YP_2238 IPR022987 Uncharacterised protein family UPF0227 YP_2238 IPR029058 Alpha/Beta hydrolase fold YP_2239 IPR017853 Glycoside hydrolase superfamily YP_2239 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily YP_2239 IPR001764 Glycoside hydrolase, family 3, N-terminal YP_2239 IPR019800 Glycoside hydrolase, family 3, active site YP_2239 IPR022956 Beta-hexosaminidase, bacterial YP_2240 IPR014093 Thiamine kinase YP_2240 IPR011009 Protein kinase-like domain superfamily YP_2240 IPR002575 Aminoglycoside phosphotransferase YP_2241 IPR014094 Penicillin-binding protein activator LpoB YP_2241 IPR012640 Membrane lipoprotein, lipid attachment site YP_2242 IPR038483 YcfL-like superfamily YP_2242 IPR010824 Protein of unknown function DUF1425 YP_2243 IPR036265 HIT-like superfamily YP_2243 IPR011146 HIT-like domain YP_2243 IPR001310 Histidine triad (HIT) protein YP_2243 IPR019808 Histidine triad, conserved site YP_2244 IPR036291 NAD(P)-binding domain superfamily YP_2244 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal YP_2245 IPR002686 Transposase IS200-like YP_2245 IPR036515 Transposase IS200-like superfamily YP_2246 IPR001996 Phosphotransferase system, IIB component, type 1 YP_2246 IPR013013 Phosphotransferase system, EIIC component, type 1 YP_2246 IPR036878 Glucose permease domain IIB YP_2246 IPR011299 PTS system glucose-specific IIBC component YP_2246 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component YP_2246 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YP_2246 IPR003352 Phosphotransferase system, EIIC YP_2247 IPR015991 Uncharacterised hydrolase TatD-type YP_2247 IPR018228 Deoxyribonuclease, TatD-related, conserved site YP_2247 IPR032466 Metal-dependent hydrolase YP_2247 IPR001130 TatD family YP_2248 IPR015199 DNA polymerase III, delta subunit, C-terminal YP_2248 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YP_2248 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2248 IPR004622 DNA polymerase III, delta prime subunit YP_2249 IPR039430 Thymidylate kinase-like domain YP_2249 IPR018095 Thymidylate kinase, conserved site YP_2249 IPR018094 Thymidylate kinase YP_2249 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2250 IPR003770 Endolytic murein transglycosylase YP_2251 IPR036038 Aminotransferase-like, PLP-dependent enzymes YP_2251 IPR018300 Aminotransferase, class IV, conserved site YP_2251 IPR001544 Aminotransferase class IV YP_2251 IPR017824 Aminodeoxychorismate lyase, class IV YP_2252 IPR036515 Transposase IS200-like superfamily YP_2252 IPR002686 Transposase IS200-like YP_2253 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YP_2253 IPR000794 Beta-ketoacyl synthase YP_2253 IPR018201 Beta-ketoacyl synthase, active site YP_2253 IPR016039 Thiolase-like YP_2253 IPR014031 Beta-ketoacyl synthase, C-terminal YP_2253 IPR014030 Beta-ketoacyl synthase, N-terminal YP_2253 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YP_2254 IPR006162 Phosphopantetheine attachment site YP_2254 IPR003231 Acyl carrier protein (ACP) YP_2254 IPR009081 Phosphopantetheine binding ACP domain YP_2254 IPR036736 ACP-like superfamily YP_2255 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2255 IPR020904 Short-chain dehydrogenase/reductase, conserved site YP_2255 IPR036291 NAD(P)-binding domain superfamily YP_2255 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YP_2256 IPR024925 Malonyl CoA-acyl carrier protein transacylase YP_2256 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type YP_2256 IPR001227 Acyl transferase domain superfamily YP_2256 IPR014043 Acyl transferase YP_2256 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YP_2256 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YP_2257 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_2257 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal YP_2257 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 YP_2257 IPR016039 Thiolase-like YP_2258 IPR012281 Phospholipid biosynthesis protein, PlsX-like YP_2258 IPR003664 Fatty acid synthesis PlsX protein YP_2259 IPR002677 Ribosomal protein L32p YP_2259 IPR011332 Zinc-binding ribosomal protein YP_2260 IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria YP_2260 IPR003772 Large ribosomal RNA subunit accumulation protein YceD YP_2261 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein YP_2261 IPR029001 Inosine triphosphate pyrophosphatase-like YP_2262 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YP_2262 IPR036986 RNA-binding S4 domain superfamily YP_2262 IPR006145 Pseudouridine synthase, RsuA/RluA YP_2262 IPR002942 RNA-binding S4 domain YP_2262 IPR020103 Pseudouridine synthase, catalytic domain superfamily YP_2262 IPR006225 Pseudouridine synthase, RluC/RluD YP_2263 IPR021968 Polyribonucleotide phosphorylase C-terminal YP_2263 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G YP_2263 IPR028878 Ribonuclease E YP_2263 IPR004659 Ribonuclease E/G YP_2263 IPR022967 RNA-binding domain, S1 YP_2263 IPR003029 S1 domain YP_2263 IPR012340 Nucleic acid-binding, OB-fold YP_2265 IPR004721 Dihydroorotase homodimeric type YP_2265 IPR002195 Dihydroorotase, conserved site YP_2265 IPR032466 Metal-dependent hydrolase YP_2265 IPR006680 Amidohydrolase-related YP_2266 IPR010391 DNA damage-inducible protein DinI-like YP_2266 IPR036687 DinI-like superfamily YP_2267 IPR001207 Transposase, mutator type YP_2268 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2268 IPR006076 FAD dependent oxidoreductase YP_2268 IPR023493 N-methyl-L-tryptophan oxidase MTOX YP_2269 IPR000792 Transcription regulator LuxR, C-terminal YP_2269 IPR001789 Signal transduction response regulator, receiver domain YP_2269 IPR016032 Signal transduction response regulator, C-terminal effector YP_2270 IPR002549 Transmembrane protein TqsA-like YP_2275 IPR016181 Acyl-CoA N-acyltransferase YP_2275 IPR018311 Autoinducer synthesis, conserved site YP_2275 IPR001690 Autoinducer synthase YP_2276 IPR016032 Signal transduction response regulator, C-terminal effector YP_2276 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YP_2276 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YP_2276 IPR000792 Transcription regulator LuxR, C-terminal YP_2276 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2277 IPR005119 LysR, substrate-binding YP_2277 IPR000847 Transcription regulator HTH, LysR YP_2277 IPR036390 Winged helix DNA-binding domain superfamily YP_2277 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2278 IPR005829 Sugar transporter, conserved site YP_2278 IPR020846 Major facilitator superfamily domain YP_2278 IPR005828 Major facilitator, sugar transporter-like YP_2278 IPR036259 MFS transporter superfamily YP_2280 IPR020471 Aldo/keto reductase YP_2280 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_2280 IPR023210 NADP-dependent oxidoreductase domain YP_2281 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST YP_2282 IPR013399 CRISPR-associated protein Csy3 YP_2283 IPR013398 CRISPR-associated protein Csy2 YP_2284 IPR013397 CRISPR-associated protein Csy1 YP_2286 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2286 IPR013395 Helicase Cas3, CRISPR-associated, Yersinia-type YP_2286 IPR006483 CRISPR-associated Cas3-type HD domain YP_2286 IPR038257 CRISPR-associated Cas3-type HD domain superfamily YP_2287 IPR002729 CRISPR-associated protein Cas1 YP_2287 IPR042211 CRISPR-associated endonuclease Cas1, N-terminal domain YP_2287 IPR019857 CRISPR-associated protein Cas1, YPEST subtype YP_2287 IPR042206 CRISPR-associated endonuclease Cas1, C-terminal domain YP_2288 IPR030192 Miniconductance mechanosensitive channel YbdG YP_2288 IPR011066 Mechanosensitive ion channel MscS, C-terminal YP_2288 IPR006685 Mechanosensitive ion channel MscS YP_2288 IPR010920 LSM domain superfamily YP_2293 IPR007184 Mannoside phosphorylase YP_2293 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily YP_2293 IPR028583 4-O-beta-D-mannosyl-D-glucose phosphorylase YP_2294 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2294 IPR035906 MetI-like superfamily YP_2295 IPR035906 MetI-like superfamily YP_2295 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2297 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_2297 IPR000843 LacI-type HTH domain YP_2297 IPR028082 Periplasmic binding protein-like I YP_2298 IPR016066 Alpha-D-phosphohexomutase, conserved site YP_2298 IPR005843 Alpha-D-phosphohexomutase, C-terminal YP_2298 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YP_2298 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YP_2298 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YP_2298 IPR005841 Alpha-D-phosphohexomutase superfamily YP_2298 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YP_2298 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YP_2299 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2299 IPR040582 MalK, OB fold domain YP_2299 IPR008995 Molybdate/tungstate binding, C-terminal YP_2299 IPR015855 ABC transporter, maltose/maltodextrin import, MalK YP_2299 IPR017871 ABC transporter, conserved site YP_2299 IPR003439 ABC transporter-like YP_2299 IPR003593 AAA+ ATPase domain YP_2301 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2301 IPR006914 VENN motif-containing domain YP_2301 IPR011050 Pectin lyase fold/virulence factor YP_2301 IPR012334 Pectin lyase fold YP_2301 IPR038181 Novel toxin 21 superfamily YP_2301 IPR028190 Novel toxin 21 YP_2301 IPR025157 Hemagglutinin repeat YP_2301 IPR008619 Filamentous haemagglutinin repeat YP_2301 IPR008638 Filamentous haemagglutinin, N-terminal YP_2305 IPR012334 Pectin lyase fold YP_2305 IPR008638 Filamentous haemagglutinin, N-terminal YP_2305 IPR006914 VENN motif-containing domain YP_2305 IPR011050 Pectin lyase fold/virulence factor YP_2305 IPR024973 ESPR domain YP_2305 IPR025157 Hemagglutinin repeat YP_2305 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2306 IPR034746 POTRA domain YP_2306 IPR005565 Haemolysin activator HlyB, C-terminal YP_2306 IPR013686 Polypeptide-transport-associated, ShlB-type YP_2306 IPR027282 Two partner secretion pathway transporter YP_2306 IPR035251 ShlB, POTRA domain YP_2307 IPR017927 FAD-binding domain, ferredoxin reductase-type YP_2307 IPR012675 Beta-grasp domain superfamily YP_2307 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YP_2307 IPR017938 Riboflavin synthase-like beta-barrel YP_2307 IPR000951 Phthalate dioxygenase reductase YP_2307 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_2307 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YP_2307 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YP_2307 IPR001433 Oxidoreductase FAD/NAD(P)-binding YP_2307 IPR039003 Carnitine monooxygenase reductase subunit YP_2307 IPR036010 2Fe-2S ferredoxin-like superfamily YP_2308 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit YP_2308 IPR017941 Rieske [2Fe-2S] iron-sulphur domain YP_2308 IPR039004 Carnitine monooxygenase oxygenase subunit YP_2308 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily YP_2308 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site YP_2308 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain YP_2309 IPR018093 BCCT transporter, conserved site YP_2309 IPR000060 BCCT transporter family YP_2311 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YP_2311 IPR024084 Isopropylmalate dehydrogenase-like domain YP_2311 IPR011829 Tartrate dehydrogenase YP_2312 IPR005119 LysR, substrate-binding YP_2312 IPR036390 Winged helix DNA-binding domain superfamily YP_2312 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2312 IPR000847 Transcription regulator HTH, LysR YP_2313 IPR000843 LacI-type HTH domain YP_2313 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_2313 IPR028082 Periplasmic binding protein-like I YP_2314 IPR001851 ABC transporter, permease YP_2315 IPR017871 ABC transporter, conserved site YP_2315 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2315 IPR015861 ABC transporter, ribose import, RbsA YP_2315 IPR003439 ABC transporter-like YP_2315 IPR003593 AAA+ ATPase domain YP_2316 IPR028082 Periplasmic binding protein-like I YP_2316 IPR025997 Periplasmic binding protein YP_2317 IPR013154 Alcohol dehydrogenase, N-terminal YP_2317 IPR011032 GroES-like superfamily YP_2317 IPR036291 NAD(P)-binding domain superfamily YP_2317 IPR013149 Alcohol dehydrogenase, C-terminal YP_2317 IPR020843 Polyketide synthase, enoylreductase domain YP_2321 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_2321 IPR027385 Outer membrane protein beta-barrel domain YP_2321 IPR000758 Virulence-related outer membrane protein YP_2322 IPR000620 EamA domain YP_2324 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal YP_2324 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_2324 IPR023506 Trans-aconitate 2-methyltransferase YP_2324 IPR041698 Methyltransferase domain 25 YP_2325 IPR023188 DNA-binding protein Dps, conserved site YP_2325 IPR012347 Ferritin-like YP_2325 IPR002177 DNA-binding protein Dps YP_2325 IPR023067 DNA protection during starvation protein, gammaproteobacteria YP_2325 IPR008331 Ferritin/DPS protein domain YP_2325 IPR009078 Ferritin-like superfamily YP_2327 IPR001320 Ionotropic glutamate receptor YP_2327 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_2327 IPR018313 Solute-binding protein family 3, conserved site YP_2328 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2328 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YP_2328 IPR035906 MetI-like superfamily YP_2329 IPR003593 AAA+ ATPase domain YP_2329 IPR017871 ABC transporter, conserved site YP_2329 IPR003439 ABC transporter-like YP_2329 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YP_2329 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2330 IPR000014 PAS domain YP_2330 IPR000700 PAS-associated, C-terminal YP_2330 IPR001610 PAC motif YP_2330 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YP_2330 IPR013655 PAS fold-3 YP_2330 IPR004090 Chemotaxis methyl-accepting receptor YP_2330 IPR035965 PAS domain superfamily YP_2331 IPR010286 METTL16/RlmF family YP_2331 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_2331 IPR016909 Ribosomal RNA large subunit methyltransferase F YP_2332 IPR036275 YdgH-like superfamily YP_2332 IPR010854 Domain of unknown function DUF1471 YP_2332 IPR025543 Dodecin-like YP_2333 IPR017459 Glycosyl transferase family 3, N-terminal domain YP_2333 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily YP_2333 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily YP_2334 IPR010192 2-succinylbenzoate--CoA ligase YP_2334 IPR042099 AMP-dependent synthetase-like superfamily YP_2334 IPR020845 AMP-binding, conserved site YP_2334 IPR025110 AMP-binding enzyme, C-terminal domain YP_2334 IPR000873 AMP-dependent synthetase/ligase YP_2335 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_2335 IPR029065 Enolase C-terminal domain-like YP_2335 IPR010196 o-Succinylbenzoate synthase, MenC type1 YP_2335 IPR029017 Enolase-like, N-terminal YP_2335 IPR036849 Enolase-like, C-terminal domain superfamily YP_2336 IPR029045 ClpP/crotonase-like domain superfamily YP_2336 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB YP_2336 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YP_2336 IPR014748 Enoyl-CoA hydratase, C-terminal YP_2336 IPR001753 Enoyl-CoA hydratase/isomerase YP_2337 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase YP_2337 IPR000073 Alpha/beta hydrolase fold-1 YP_2337 IPR029058 Alpha/Beta hydrolase fold YP_2338 IPR032264 Menaquinone biosynthesis protein MenD, middle domain YP_2338 IPR029061 Thiamin diphosphate-binding fold YP_2338 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YP_2338 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_2338 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase YP_2339 IPR005801 ADC synthase YP_2339 IPR034681 Isochorismate synthase MenF YP_2339 IPR015890 Chorismate-utilising enzyme, C-terminal YP_2339 IPR004561 Isochorismate synthase YP_2341 IPR010279 Inner membrane protein YqjD/ElaB YP_2344 IPR037237 IlvD/EDD, N-terminal domain YP_2344 IPR042096 Dihydroxy-acid dehydratase, C-terminal YP_2344 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase YP_2344 IPR004786 6-phosphogluconate dehydratase YP_2344 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site YP_2346 IPR036259 MFS transporter superfamily YP_2346 IPR011701 Major facilitator superfamily YP_2346 IPR020846 Major facilitator superfamily domain YP_2347 IPR036291 NAD(P)-binding domain superfamily YP_2347 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YP_2347 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_2348 IPR028082 Periplasmic binding protein-like I YP_2348 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_2348 IPR000843 LacI-type HTH domain YP_2350 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2350 IPR036291 NAD(P)-binding domain superfamily YP_2350 IPR020904 Short-chain dehydrogenase/reductase, conserved site YP_2351 IPR031322 Shikimate kinase/gluconokinase YP_2351 IPR006001 Carbohydrate kinase, thermoresistant glucokinase YP_2351 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2352 IPR004375 YhcH/YjgK/YiaL family YP_2352 IPR037012 YhcH/YjgK/YiaL superfamily YP_2354 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit YP_2354 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 YP_2355 IPR010227 NADH-quinone oxidoreductase, chain M/4 YP_2355 IPR003918 NADH:ubiquinone oxidoreductase YP_2355 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit YP_2356 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal YP_2356 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 YP_2356 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit YP_2356 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup YP_2357 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K YP_2357 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like YP_2358 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ YP_2358 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 YP_2359 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2359 IPR010226 NADH-quinone oxidoreductase, chain I YP_2359 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2360 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H YP_2360 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site YP_2361 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YP_2361 IPR036010 2Fe-2S ferredoxin-like superfamily YP_2361 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site YP_2361 IPR009010 Aspartate decarboxylase-like domain superfamily YP_2361 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding YP_2361 IPR010228 NADH:ubiquinone oxidoreductase, subunit G YP_2361 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YP_2361 IPR006656 Molybdopterin oxidoreductase YP_2361 IPR006657 Molybdopterin dinucleotide-binding domain YP_2362 IPR011537 NADH ubiquinone oxidoreductase, F subunit YP_2362 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain YP_2362 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily YP_2362 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily YP_2362 IPR019554 Soluble ligand binding domain YP_2362 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site YP_2362 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain YP_2363 IPR042128 NuoE domain YP_2363 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal YP_2363 IPR002023 NADH-quinone oxidoreductase subunit E-like YP_2363 IPR036249 Thioredoxin-like superfamily YP_2364 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site YP_2364 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit YP_2364 IPR001135 NADH-quinone oxidoreductase, subunit D YP_2364 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H YP_2364 IPR029014 [NiFe]-hydrogenase, large subunit YP_2364 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily YP_2364 IPR023062 NADH dehydrogenase, subunit CD YP_2364 IPR010218 NADH dehydrogenase, subunit C YP_2364 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily YP_2365 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit YP_2365 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit YP_2366 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily YP_2366 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid YP_2366 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 YP_2367 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2367 IPR005119 LysR, substrate-binding YP_2367 IPR000847 Transcription regulator HTH, LysR YP_2367 IPR036390 Winged helix DNA-binding domain superfamily YP_2369 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_2369 IPR004839 Aminotransferase, class I/classII YP_2369 IPR015424 Pyridoxal phosphate-dependent transferase YP_2369 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_2370 IPR022971 5'-deoxynucleotidase YfbR YP_2370 IPR003607 HD/PDEase domain YP_2370 IPR039356 Metal-dependent nucleoside 5'-monophosphatase YP_2372 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YP_2372 IPR006037 Regulator of K+ conductance, C-terminal YP_2372 IPR031312 Sodium/sulphate symporter, conserved site YP_2372 IPR004680 Citrate transporter-like domain YP_2373 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YP_2373 IPR036412 HAD-like superfamily YP_2373 IPR023214 HAD superfamily YP_2373 IPR041492 Haloacid dehalogenase-like hydrolase YP_2373 IPR006439 HAD hydrolase, subfamily IA YP_2374 IPR005587 Uncharacterised protein family UPF0304, YfbU YP_2374 IPR023146 YfbU, alpha-helical bundle domain superfamily YP_2374 IPR023145 YfbU, helix-hairpin domain superfamily YP_2375 IPR007334 Uncharacterised protein family UPF0208 YP_2377 IPR023865 Aliphatic acid kinase, short-chain, conserved site YP_2377 IPR000890 Aliphatic acid kinase, short-chain YP_2377 IPR004372 Acetate/propionate kinase YP_2378 IPR016475 Phosphate acetyltransferase, bacteria YP_2378 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2378 IPR004614 Phosphate acetyltransferase YP_2378 IPR042113 Phosphate acetyltransferase, domain 1 YP_2378 IPR042112 Phosphate acetyltransferase, domain 2 YP_2378 IPR002505 Phosphate acetyl/butaryl transferase YP_2378 IPR010766 DRTGG YP_2378 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily YP_2379 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_2379 IPR001761 Periplasmic binding protein/LacI sugar binding domain YP_2379 IPR000843 LacI-type HTH domain YP_2379 IPR028082 Periplasmic binding protein-like I YP_2380 IPR002178 PTS EIIA type-2 domain YP_2380 IPR016152 Phosphotransferase/anion transporter YP_2382 IPR004703 Phosphotransferase system, sugar-specific permease component YP_2383 IPR024195 NUDIX hydrolase, YfcD, predicted YP_2383 IPR000086 NUDIX hydrolase domain YP_2383 IPR015797 NUDIX hydrolase-like domain superfamily YP_2384 IPR024654 Calcineurin-like phosphoesterase domain, lpxH-type YP_2384 IPR020935 Phosphodiesterase YfcE, conserved site YP_2384 IPR000979 Phosphodiesterase MJ0936/Vps29 YP_2384 IPR029052 Metallo-dependent phosphatase-like YP_2384 IPR041802 YfcE-like, metallophosphatase domain YP_2386 IPR013549 Domain of unknown function DUF1731 YP_2386 IPR001509 NAD-dependent epimerase/dehydratase YP_2386 IPR010099 Epimerase family protein SDR39U1 YP_2386 IPR036291 NAD(P)-binding domain superfamily YP_2387 IPR003439 ABC transporter-like YP_2387 IPR017871 ABC transporter, conserved site YP_2387 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2387 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YP_2387 IPR003593 AAA+ ATPase domain YP_2388 IPR035906 MetI-like superfamily YP_2388 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2388 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YP_2389 IPR030199 Histidine transport system permease protein HisQ YP_2389 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2389 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YP_2389 IPR035906 MetI-like superfamily YP_2390 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YP_2390 IPR018313 Solute-binding protein family 3, conserved site YP_2390 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_2391 IPR003382 Flavoprotein YP_2391 IPR036551 Flavin prenyltransferase-like YP_2391 IPR004507 Flavin prenyltransferase UbiX-like YP_2392 IPR035584 Amidophosphoribosyltransferase, N-terminal YP_2392 IPR017932 Glutamine amidotransferase type 2 domain YP_2392 IPR029055 Nucleophile aminohydrolases, N-terminal YP_2392 IPR000836 Phosphoribosyltransferase domain YP_2392 IPR029057 Phosphoribosyltransferase-like YP_2392 IPR005854 Amidophosphoribosyltransferase YP_2393 IPR003825 Colicin V production, CvpA YP_2394 IPR036680 Sporulation-like domain superfamily YP_2394 IPR007730 Sporulation-like domain YP_2394 IPR032898 Cell division protein DedD YP_2395 IPR036615 Mur ligase, C-terminal domain superfamily YP_2395 IPR004101 Mur ligase, C-terminal YP_2395 IPR013221 Mur ligase, central YP_2395 IPR001645 Folylpolyglutamate synthetase YP_2395 IPR036565 Mur-like, catalytic domain superfamily YP_2395 IPR018109 Folylpolyglutamate synthetase, conserved site YP_2396 IPR029045 ClpP/crotonase-like domain superfamily YP_2396 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal YP_2396 IPR041010 Acetyl-coA carboxylase zinc finger domain YP_2396 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit YP_2396 IPR034733 Acetyl-CoA carboxylase YP_2397 IPR032818 DedA family YP_2397 IPR032816 SNARE associated Golgi protein YP_2398 IPR020095 Pseudouridine synthase I, TruA, C-terminal YP_2398 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain YP_2398 IPR020103 Pseudouridine synthase, catalytic domain superfamily YP_2398 IPR001406 Pseudouridine synthase I, TruA YP_2399 IPR000534 Semialdehyde dehydrogenase, NAD-binding YP_2399 IPR036291 NAD(P)-binding domain superfamily YP_2399 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YP_2400 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YP_2400 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_2400 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YP_2400 IPR020921 Erythronate-4-phosphate dehydrogenase YP_2400 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain YP_2400 IPR036291 NAD(P)-binding domain superfamily YP_2400 IPR038251 PdxB, dimerisation domain superfamily YP_2400 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YP_2402 IPR000620 EamA domain YP_2403 IPR023597 Flagellar regulator Flk YP_2404 IPR000259 Fimbrial-type adhesion domain YP_2404 IPR008966 Adhesion domain superfamily YP_2404 IPR036937 Fimbrial-type adhesion domain superfamily YP_2405 IPR015942 Asp/Glu/hydantoin racemase YP_2405 IPR001920 Asp/Glu racemase YP_2405 IPR018187 Asp/Glu racemase, active site 1 YP_2405 IPR033134 Asp/Glu racemase, active site 2 YP_2405 IPR004380 Aspartate racemase YP_2406 IPR014030 Beta-ketoacyl synthase, N-terminal YP_2406 IPR018201 Beta-ketoacyl synthase, active site YP_2406 IPR000794 Beta-ketoacyl synthase YP_2406 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YP_2406 IPR016039 Thiolase-like YP_2406 IPR014031 Beta-ketoacyl synthase, C-terminal YP_2407 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal YP_2407 IPR006076 FAD dependent oxidoreductase YP_2407 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2407 IPR008471 MnmC-like methyltransferase YP_2407 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC YP_2407 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_2408 IPR014987 Uncharacterised protein family YfcL YP_2409 IPR007411 Elongation factor P hydroxylase YP_2410 IPR002781 Transmembrane protein TauE-like YP_2411 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily YP_2411 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase YP_2412 IPR020541 Chorismate synthase, conserved site YP_2412 IPR035904 Chorismate synthase AroC superfamily YP_2412 IPR000453 Chorismate synthase YP_2413 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YP_2413 IPR004556 Methyltransferase HemK-like YP_2413 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_2413 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase YP_2413 IPR007848 Methyltransferase small domain YP_2414 IPR036063 Smr domain superfamily YP_2414 IPR022990 Uncharacterised protein family UPF0115 YP_2414 IPR002625 Smr domain YP_2416 IPR029033 Histidine phosphatase superfamily YP_2416 IPR004449 Phosphohistidine phosphatase SixA YP_2416 IPR013078 Histidine phosphatase superfamily, clade-1 YP_2417 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site YP_2417 IPR036291 NAD(P)-binding domain superfamily YP_2417 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding YP_2417 IPR012802 Fatty oxidation complex, alpha subunit FadJ YP_2417 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_2417 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YP_2417 IPR029045 ClpP/crotonase-like domain superfamily YP_2417 IPR001753 Enoyl-CoA hydratase/isomerase YP_2418 IPR020615 Thiolase, acyl-enzyme intermediate active site YP_2418 IPR020616 Thiolase, N-terminal YP_2418 IPR016039 Thiolase-like YP_2418 IPR012806 Acetyl-CoA C-acyltransferase FadI YP_2418 IPR020613 Thiolase, conserved site YP_2418 IPR020610 Thiolase, active site YP_2418 IPR020617 Thiolase, C-terminal YP_2418 IPR002155 Thiolase YP_2419 IPR035571 UPF0234-like, C-terminal YP_2419 IPR005272 Conserved hypothetical protein CHP00743 YP_2420 IPR042117 OMPP1/FadL/TodX superfamily YP_2420 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) YP_2421 IPR007428 MlaA lipoprotein YP_2422 IPR005616 CcmH/CycL/Ccl2/NrfF family YP_2422 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily YP_2422 IPR011990 Tetratricopeptide-like helical domain superfamily YP_2422 IPR013026 Tetratricopeptide repeat-containing domain YP_2422 IPR019734 Tetratricopeptide repeat YP_2423 IPR011990 Tetratricopeptide-like helical domain superfamily YP_2423 IPR019734 Tetratricopeptide repeat YP_2423 IPR005616 CcmH/CycL/Ccl2/NrfF family YP_2423 IPR013026 Tetratricopeptide repeat-containing domain YP_2423 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily YP_2424 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE YP_2424 IPR013766 Thioredoxin domain YP_2424 IPR017937 Thioredoxin, conserved site YP_2424 IPR013740 Redoxin YP_2424 IPR036249 Thioredoxin-like superfamily YP_2425 IPR003568 Cytochrome c-type biogenesis protein CcmF YP_2425 IPR003567 Cytochrome c-type biogenesis protein YP_2425 IPR002541 Cytochrome c assembly protein YP_2425 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal YP_2426 IPR036127 CcmE-like superfamily YP_2426 IPR004329 CcmE/CycJ protein YP_2427 IPR007078 Haem exporter protein D (CcmD) YP_2428 IPR003557 Cytochrome c-type biogenesis protein CcmC YP_2428 IPR002541 Cytochrome c assembly protein YP_2429 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria YP_2429 IPR003544 Cytochrome c-type biogenesis protein CcmB YP_2430 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2430 IPR005895 ABC transporter, haem export, CcmA YP_2430 IPR003439 ABC transporter-like YP_2430 IPR003593 AAA+ ATPase domain YP_2430 IPR017871 ABC transporter, conserved site YP_2432 IPR023353 LemA-like domain superfamily YP_2432 IPR007156 LemA YP_2434 IPR004624 PhnA protein YP_2434 IPR013988 PhnA protein, C-terminal YP_2434 IPR013987 PhnA protein, N-terminal YP_2436 IPR001207 Transposase, mutator type YP_2441 IPR037026 Vgr protein, OB-fold domain superfamily YP_2441 IPR006531 Gp5 N-terminal YP_2441 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YP_2441 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YP_2444 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2444 IPR002611 IstB-like ATP-binding protein YP_2444 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_2444 IPR003593 AAA+ ATPase domain YP_2444 IPR001270 ClpA/B family YP_2445 IPR012337 Ribonuclease H-like superfamily YP_2445 IPR006120 Resolvase, HTH domain YP_2445 IPR036397 Ribonuclease H superfamily YP_2445 IPR017894 HTH domain, IS21 transposase-type YP_2445 IPR001584 Integrase, catalytic core YP_2447 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YP_2448 IPR035906 MetI-like superfamily YP_2448 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2449 IPR003439 ABC transporter-like YP_2449 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2449 IPR005892 Glycine betaine transport ATP-binding subunit YP_2449 IPR000644 CBS domain YP_2449 IPR017871 ABC transporter, conserved site YP_2449 IPR003593 AAA+ ATPase domain YP_2450 IPR000358 Ribonucleotide reductase small subunit family YP_2450 IPR030475 Ribonucleotide reductase small subunit, acitve site YP_2450 IPR033909 Ribonucleotide reductase small subunit YP_2450 IPR026494 Ribonucleoside reductase subunit beta, NrdF YP_2450 IPR012348 Ribonucleotide reductase-like YP_2450 IPR009078 Ferritin-like superfamily YP_2451 IPR000788 Ribonucleotide reductase large subunit, C-terminal YP_2451 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE YP_2451 IPR039718 Ribonucleoside-diphosphate reductase large subunit YP_2451 IPR013346 Ribonucleotide reductase, class I , alpha subunit YP_2451 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YP_2451 IPR013509 Ribonucleotide reductase large subunit, N-terminal YP_2451 IPR013554 Ribonucleotide reductase N-terminal YP_2452 IPR029039 Flavoprotein-like superfamily YP_2452 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial YP_2452 IPR004465 Ribonucleotide reductase Class Ib, NrdI YP_2455 IPR018994 Protein of unknown function DUF2002 YP_2457 IPR001207 Transposase, mutator type YP_2458 IPR009587 Protein of unknown function DUF1198 YP_2460 IPR011129 Cold shock domain YP_2460 IPR019844 Cold-shock (CSD) domain YP_2460 IPR002059 Cold-shock protein, DNA-binding YP_2460 IPR012156 Cold shock, CspA YP_2460 IPR012340 Nucleic acid-binding, OB-fold YP_2461 IPR039424 Solute-binding protein family 5 YP_2461 IPR030678 Peptide/nickel binding protein, MppA-type YP_2461 IPR011980 Nickel ABC transporter, substrate-binding protein NikA YP_2461 IPR023765 Solute-binding protein family 5, conserved site YP_2461 IPR000914 Solute-binding protein family 5 domain YP_2462 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2462 IPR035906 MetI-like superfamily YP_2463 IPR035906 MetI-like superfamily YP_2463 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2463 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YP_2464 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2464 IPR003439 ABC transporter-like YP_2464 IPR017871 ABC transporter, conserved site YP_2464 IPR015863 ABC transporter, hemin import, HmuV YP_2464 IPR003593 AAA+ ATPase domain YP_2465 IPR015858 ABC transporter, nickel import, NikE YP_2465 IPR014137 Nickel import ATP-binding protein NikE YP_2465 IPR003593 AAA+ ATPase domain YP_2465 IPR003439 ABC transporter-like YP_2465 IPR017871 ABC transporter, conserved site YP_2465 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2466 IPR012010 Urease, gamma subunit YP_2466 IPR002026 Urease, gamma/gamma-beta subunit YP_2466 IPR036463 Urease, gamma subunit superfamily YP_2467 IPR036461 Urease, beta subunit superfamily YP_2467 IPR002019 Urease, beta subunit YP_2468 IPR006680 Amidohydrolase-related YP_2468 IPR032466 Metal-dependent hydrolase YP_2468 IPR011612 Urease alpha-subunit, N-terminal domain YP_2468 IPR017950 Urease active site YP_2468 IPR005848 Urease, alpha subunit YP_2468 IPR029754 Urease nickel binding site YP_2468 IPR011059 Metal-dependent hydrolase, composite domain superfamily YP_2468 IPR017951 Urease alpha subunit, C-terminal YP_2469 IPR004029 UreE urease accessory, N-terminal YP_2469 IPR012406 Urease accessory protein UreE YP_2469 IPR036118 UreE urease accessory, N-terminal domain superfamily YP_2469 IPR007864 Urease accessory protein UreE, C-terminal domain YP_2470 IPR038277 UreF domain superfamily YP_2470 IPR002639 Urease accessory protein UreF YP_2471 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2471 IPR004400 Urease accessory protein UreG YP_2471 IPR003495 CobW/HypB/UreG, nucleotide-binding domain YP_2473 IPR029020 Ammonium/urea transporter YP_2473 IPR004937 Urea transporter YP_2474 IPR011541 Nickel/cobalt transporter, high-affinity YP_2474 IPR004688 Transition metal uptake transporter nickel/cobalt YP_2475 IPR028623 HNS-dependent expression B YP_2475 IPR038303 HNS-dependent expression A/B superfamily YP_2475 IPR010486 HNS-dependent expression A/B YP_2476 IPR036291 NAD(P)-binding domain superfamily YP_2476 IPR003148 Regulator of K+ conductance, N-terminal YP_2476 IPR013099 Potassium channel domain YP_2477 IPR003691 Putative fluoride ion transporter CrcB YP_2478 IPR003691 Putative fluoride ion transporter CrcB YP_2480 IPR036095 PTS system IIB component-like superfamily YP_2480 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YP_2480 IPR013012 Phosphotransferase system, EIIB component, type 3 YP_2481 IPR003352 Phosphotransferase system, EIIC YP_2481 IPR004501 Phosphotransferase system, EIIC component, type 3 YP_2481 IPR004796 Phosphotransferase system, cellobiose-type IIC component YP_2482 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit YP_2482 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily YP_2483 IPR014710 RmlC-like jelly roll fold YP_2483 IPR018062 HTH domain AraC-type, conserved site YP_2483 IPR020449 Transcription regulator HTH, AraC- type YP_2483 IPR013096 Cupin 2, conserved barrel YP_2483 IPR009057 Homeobox-like domain superfamily YP_2483 IPR011051 RmlC-like cupin domain superfamily YP_2483 IPR018060 DNA binding HTH domain, AraC-type YP_2484 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria YP_2484 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YP_2484 IPR006879 Carbohydrate deacetylase YdjC-like YP_2487 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily YP_2487 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain YP_2487 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal YP_2487 IPR013321 Arc-type ribbon-helix-helix YP_2487 IPR010985 Ribbon-helix-helix YP_2487 IPR005621 Negative modulator of initiation of replication SeqA YP_2488 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YP_2488 IPR016066 Alpha-D-phosphohexomutase, conserved site YP_2488 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YP_2488 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YP_2488 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YP_2488 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YP_2488 IPR005852 Phosphoglucomutase, alpha-D-glucose specific YP_2488 IPR005843 Alpha-D-phosphohexomutase, C-terminal YP_2491 IPR011006 CheY-like superfamily YP_2491 IPR001867 OmpR/PhoB-type DNA-binding domain YP_2491 IPR039420 Transcriptional regulatory protein WalR-like YP_2491 IPR001789 Signal transduction response regulator, receiver domain YP_2491 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2492 IPR003018 GAF domain YP_2492 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal YP_2492 IPR029016 GAF-like domain superfamily YP_2492 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_2492 IPR038318 KdpD, transmembrane domain superfamily YP_2492 IPR025201 Sensor protein KdpD, transmembrane domain YP_2492 IPR005467 Histidine kinase domain YP_2492 IPR003594 Histidine kinase/HSP90-like ATPase YP_2492 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_2492 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_2492 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2493 IPR003820 Potassium-transporting ATPase C chain YP_2494 IPR023299 P-type ATPase, cytoplasmic domain N YP_2494 IPR001757 P-type ATPase YP_2494 IPR006391 P-type ATPase, B chain, subfamily IA YP_2494 IPR036412 HAD-like superfamily YP_2494 IPR018303 P-type ATPase, phosphorylation site YP_2494 IPR023298 P-type ATPase, transmembrane domain superfamily YP_2494 IPR008250 P-type ATPase, A domain superfamily YP_2495 IPR004623 Potassium-transporting ATPase A chain YP_2496 IPR019663 Uncharacterised protein YbfA YP_2498 IPR013560 Domain of unknown function DUF1722 YP_2499 IPR006050 DNA photolyase, N-terminal YP_2499 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal YP_2499 IPR002081 Cryptochrome/DNA photolyase class 1 YP_2499 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain YP_2499 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily YP_2499 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily YP_2499 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_2500 IPR024225 Cyclic-AMP phosphodiesterase class-II, conserved site YP_2500 IPR000396 Cyclic-AMP phosphodiesterase, class-II YP_2500 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_2501 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 YP_2501 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily YP_2503 IPR029000 Cyclophilin-like domain superfamily YP_2503 IPR003778 Carboxyltransferase domain, subdomain A and B YP_2504 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YP_2504 IPR005501 LamB/YcsF/PxpA-like YP_2507 IPR033693 Pyroglutamyl peptidase I, Glu active site YP_2507 IPR033694 Pyroglutamyl peptidase I, Cys active site YP_2507 IPR029762 Pyroglutamyl peptidase I, bacterial-type YP_2507 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily YP_2507 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like YP_2507 IPR000816 Peptidase C15, pyroglutamyl peptidase I YP_2508 IPR005122 Uracil-DNA glycosylase-like YP_2508 IPR002043 Uracil-DNA glycosylase family 1 YP_2508 IPR018085 Uracil-DNA glycosylase, active site YP_2508 IPR036895 Uracil-DNA glycosylase-like domain superfamily YP_2509 IPR001150 Glycine radical domain YP_2509 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YP_2509 IPR011140 Autonomous glycyl radical cofactor GrcA YP_2510 IPR029058 Alpha/Beta hydrolase fold YP_2511 IPR002110 Ankyrin repeat YP_2511 IPR020683 Ankyrin repeat-containing domain YP_2511 IPR036770 Ankyrin repeat-containing domain superfamily YP_2512 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2512 IPR001650 Helicase, C-terminal YP_2512 IPR014014 RNA helicase, DEAD-box type, Q motif YP_2512 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YP_2512 IPR028621 ATP-dependent RNA helicase SrmB YP_2512 IPR011545 DEAD/DEAH box helicase domain YP_2512 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_2513 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase YP_2513 IPR007848 Methyltransferase small domain YP_2513 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_2513 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YP_2514 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2514 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily YP_2514 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YP_2514 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YP_2514 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily YP_2514 IPR005288 L-aspartate oxidase YP_2515 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site YP_2515 IPR007627 RNA polymerase sigma-70 region 2 YP_2515 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2515 IPR013325 RNA polymerase sigma factor, region 2 YP_2515 IPR014286 RNA polymerase sigma-70 RpoE type YP_2515 IPR014284 RNA polymerase sigma-70 like domain YP_2515 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_2515 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 YP_2515 IPR039425 RNA polymerase sigma-70 like YP_2516 IPR005572 Anti sigma-E protein RseA, N-terminal YP_2516 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily YP_2516 IPR005573 Anti sigma-E protein RseA, C-terminal YP_2516 IPR026279 Sigma-E factor negative regulatory protein RseA YP_2517 IPR038484 MucB/RseB, C-terminal domain superfamily YP_2517 IPR033434 MucB/RseB, N-terminal YP_2517 IPR033436 MucB/RseB, C-terminal YP_2517 IPR005588 MucB/RseB YP_2518 IPR026268 Protein RseC YP_2518 IPR007359 Positive regulator of sigma(E), RseC/MucC YP_2520 IPR031157 Tr-type G domain, conserved site YP_2520 IPR006297 Elongation factor 4 YP_2520 IPR000795 Transcription factor, GTP-binding domain YP_2520 IPR005225 Small GTP-binding protein domain YP_2520 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2520 IPR035654 Elongation factor 4, domain IV YP_2520 IPR013842 GTP-binding protein LepA, C-terminal YP_2520 IPR038363 LepA, C-terminal domain superfamily YP_2520 IPR035647 EF-G domain III/V-like YP_2520 IPR000640 Elongation factor EFG, domain V-like YP_2520 IPR004161 Translation elongation factor EFTu-like, domain 2 YP_2521 IPR019758 Peptidase S26A, signal peptidase I, conserved site YP_2521 IPR019757 Peptidase S26A, signal peptidase I, lysine active site YP_2521 IPR019533 Peptidase S26 YP_2521 IPR000223 Peptidase S26A, signal peptidase I YP_2521 IPR036286 LexA/Signal peptidase-like superfamily YP_2521 IPR019756 Peptidase S26A, signal peptidase I, serine active site YP_2522 IPR000999 Ribonuclease III domain YP_2522 IPR036389 Ribonuclease III, endonuclease domain superfamily YP_2522 IPR011907 Ribonuclease III YP_2522 IPR014720 Double-stranded RNA-binding domain YP_2523 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2523 IPR030388 Era-type guanine nucleotide-binding (G) domain YP_2523 IPR004044 K Homology domain, type 2 YP_2523 IPR015946 K homology domain-like, alpha/beta YP_2523 IPR006073 GTP binding domain YP_2523 IPR009019 K homology domain superfamily, prokaryotic type YP_2523 IPR005662 GTP-binding protein Era YP_2523 IPR005225 Small GTP-binding protein domain YP_2524 IPR022572 DNA replication/recombination mediator RecO, N-terminal YP_2524 IPR037278 ARFGAP/RecO-like zinc finger YP_2524 IPR012340 Nucleic acid-binding, OB-fold YP_2524 IPR003717 Recombination protein O, RecO YP_2525 IPR013785 Aldolase-type TIM barrel YP_2525 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ YP_2525 IPR036130 Pyridoxine 5'-phosphate synthase YP_2526 IPR037143 4'-phosphopantetheinyl transferase domain superfamily YP_2526 IPR002582 Holo-[acyl carrier protein] synthase YP_2526 IPR004568 Phosphopantetheine-protein transferase domain YP_2526 IPR008278 4'-phosphopantetheinyl transferase domain YP_2527 IPR002686 Transposase IS200-like YP_2527 IPR036515 Transposase IS200-like superfamily YP_2528 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2528 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2530 IPR036397 Ribonuclease H superfamily YP_2530 IPR006120 Resolvase, HTH domain YP_2530 IPR017894 HTH domain, IS21 transposase-type YP_2530 IPR012337 Ribonuclease H-like superfamily YP_2530 IPR001584 Integrase, catalytic core YP_2531 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2531 IPR002611 IstB-like ATP-binding protein YP_2531 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_2531 IPR001270 ClpA/B family YP_2531 IPR003593 AAA+ ATPase domain YP_2532 IPR009060 UBA-like superfamily YP_2532 IPR001347 Sugar isomerase (SIS) YP_2532 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ YP_2532 IPR005486 Glucokinase regulatory protein, conserved site YP_2532 IPR040190 N-acetylmuramic acid 6-phosphate etherase/glucokinase regulatory protein YP_2533 IPR023214 HAD superfamily YP_2533 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB YP_2533 IPR036412 HAD-like superfamily YP_2534 IPR016192 APOBEC/CMP deaminase, zinc-binding YP_2534 IPR028883 tRNA-specific adenosine deaminase YP_2534 IPR016193 Cytidine deaminase-like YP_2534 IPR002125 Cytidine and deoxycytidylate deaminase domain YP_2535 IPR023703 Membrane-bound lytic murein transglycosylase F YP_2535 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_2535 IPR000189 Prokaryotic transglycosylase, active site YP_2535 IPR008258 Transglycosylase SLT domain 1 YP_2535 IPR023346 Lysozyme-like domain superfamily YP_2536 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain YP_2536 IPR017926 Glutamine amidotransferase YP_2536 IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal YP_2536 IPR029062 Class I glutamine amidotransferase-like YP_2536 IPR010918 PurM-like, C-terminal domain YP_2536 IPR036676 PurM-like, C-terminal domain superfamily YP_2536 IPR010073 Phosphoribosylformylglycinamidine synthase PurL YP_2536 IPR036921 PurM-like, N-terminal domain superfamily YP_2536 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily YP_2540 IPR036515 Transposase IS200-like superfamily YP_2540 IPR002686 Transposase IS200-like YP_2541 IPR005467 Histidine kinase domain YP_2541 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_2541 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_2541 IPR003594 Histidine kinase/HSP90-like ATPase YP_2541 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2541 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_2542 IPR025262 Quorum-sensing regulator protein G YP_2543 IPR025944 Sigma-54 interaction domain, conserved site YP_2543 IPR009057 Homeobox-like domain superfamily YP_2543 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YP_2543 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2543 IPR003593 AAA+ ATPase domain YP_2543 IPR001789 Signal transduction response regulator, receiver domain YP_2543 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YP_2543 IPR002078 RNA polymerase sigma factor 54 interaction domain YP_2543 IPR011006 CheY-like superfamily YP_2544 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_2544 IPR036526 Carbon-nitrogen hydrolase superfamily YP_2544 IPR003010 Carbon-nitrogen hydrolase YP_2544 IPR003694 NAD(+) synthetase YP_2544 IPR022310 NAD/GMP synthase YP_2544 IPR014445 Glutamine-dependent NAD(+) synthetase YP_2544 IPR000132 Nitrilase/cyanide hydratase, conserved site YP_2545 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YP_2545 IPR002187 Nitrogen regulatory protein PII YP_2545 IPR011322 Nitrogen regulatory PII-like, alpha/beta YP_2545 IPR017918 Nitrogen regulatory protein PII, conserved site YP_2545 IPR002332 Nitrogen regulatory protein P-II, urydylation site YP_2547 IPR012292 Globin/Protoglobin YP_2547 IPR001433 Oxidoreductase FAD/NAD(P)-binding YP_2547 IPR023950 Flavohemoprotein YP_2547 IPR009050 Globin-like superfamily YP_2547 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_2547 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YP_2547 IPR017927 FAD-binding domain, ferredoxin reductase-type YP_2547 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YP_2547 IPR000971 Globin YP_2547 IPR017938 Riboflavin synthase-like beta-barrel YP_2548 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_2548 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_2548 IPR015424 Pyridoxal phosphate-dependent transferase YP_2548 IPR001085 Serine hydroxymethyltransferase YP_2548 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site YP_2548 IPR039429 Serine hydroxymethyltransferase-like domain YP_2550 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_2550 IPR000758 Virulence-related outer membrane protein YP_2550 IPR027385 Outer membrane protein beta-barrel domain YP_2551 IPR026032 Probable 3-phenylpropionic acid transporter YP_2551 IPR024989 Major facilitator superfamily associated domain YP_2551 IPR036259 MFS transporter superfamily YP_2552 IPR036634 PRD domain superfamily YP_2552 IPR011608 PRD domain YP_2553 IPR010412 Protein of unknown function DUF1007 YP_2553 IPR016537 Uncharacterised conserved protein UCP008159, YP_2554 IPR011541 Nickel/cobalt transporter, high-affinity YP_2555 IPR020550 Inositol monophosphatase, conserved site YP_2555 IPR033942 Inositol monophosphatase YP_2555 IPR020583 Inositol monophosphatase, metal-binding site YP_2555 IPR000760 Inositol monophosphatase-like YP_2555 IPR022337 Inositol monophosphatase, SuhB YP_2556 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YP_2556 IPR001537 tRNA/rRNA methyltransferase, SpoU type YP_2556 IPR004384 RNA methyltransferase TrmJ/LasT YP_2556 IPR029028 Alpha/beta knot methyltransferases YP_2557 IPR000944 Transcription regulator Rrf2-type YP_2557 IPR036390 Winged helix DNA-binding domain superfamily YP_2557 IPR010242 Transcription factor HTH, IscR YP_2557 IPR030489 Transcription regulator Rrf2-type, conserved site YP_2557 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2558 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_2558 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YP_2558 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_2558 IPR010240 Cysteine desulfurase IscS YP_2558 IPR000192 Aminotransferase class V domain YP_2558 IPR016454 Cysteine desulfurase YP_2558 IPR015424 Pyridoxal phosphate-dependent transferase YP_2559 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal YP_2559 IPR011339 ISC system FeS cluster assembly, IscU scaffold YP_2560 IPR000361 FeS cluster biogenesis YP_2560 IPR011302 Iron-binding protein IscA, proteobacteria YP_2560 IPR035903 HesB-like domain superfamily YP_2560 IPR017870 FeS cluster insertion, C-terminal, conserved site YP_2560 IPR016092 FeS cluster insertion protein YP_2562 IPR036386 HscB, C-terminal domain superfamily YP_2562 IPR001623 DnaJ domain YP_2562 IPR004640 Co-chaperone Hsc20 YP_2562 IPR036869 Chaperone J-domain superfamily YP_2562 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain YP_2563 IPR013126 Heat shock protein 70 family YP_2563 IPR042039 HscA chaperone, nucleotide-binding domain YP_2563 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily YP_2563 IPR018181 Heat shock protein 70, conserved site YP_2563 IPR010236 ISC system FeS cluster assembly, HscA chaperone YP_2563 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily YP_2564 IPR001055 Adrenodoxin YP_2564 IPR012675 Beta-grasp domain superfamily YP_2564 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria YP_2564 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YP_2564 IPR036010 2Fe-2S ferredoxin-like superfamily YP_2564 IPR018298 Adrenodoxin, iron-sulphur binding site YP_2565 IPR036762 IscX-like superfamily YP_2565 IPR007479 ISC system FeS cluster assembly, IscX YP_2566 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal YP_2566 IPR001346 Interferon regulatory factor DNA-binding domain YP_2566 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B YP_2566 IPR008330 Peptidase M17, peptidase B YP_2567 IPR009839 SseB protein N-terminal domain YP_2567 IPR027945 SseB protein, C-terminal YP_2569 IPR001207 Transposase, mutator type YP_2571 IPR016148 Pili assembly chaperone, C-terminal YP_2571 IPR016147 Pili assembly chaperone, N-terminal YP_2571 IPR001829 Pili assembly chaperone, bacterial YP_2571 IPR018046 Pili assembly chaperone, conserved site YP_2571 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_2571 IPR008962 PapD-like superfamily YP_2571 IPR013783 Immunoglobulin-like fold YP_2572 IPR036937 Fimbrial-type adhesion domain superfamily YP_2572 IPR008966 Adhesion domain superfamily YP_2572 IPR039458 FimA-like YP_2573 IPR028299 ClpA/B, conserved site 2 YP_2573 IPR018368 ClpA/B, conserved site 1 YP_2573 IPR003959 ATPase, AAA-type, core YP_2573 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2573 IPR004176 Clp, N-terminal YP_2573 IPR036628 Clp, N-terminal domain superfamily YP_2573 IPR019489 Clp ATPase, C-terminal YP_2573 IPR017729 Type VI secretion system, ATPase ClpV1 YP_2573 IPR003593 AAA+ ATPase domain YP_2573 IPR041546 ClpA/ClpB, AAA lid domain YP_2573 IPR001270 ClpA/B family YP_2583 IPR031304 Transglycosylase SLT domain 2 YP_2583 IPR011757 Lytic transglycosylase MltB YP_2583 IPR023346 Lysozyme-like domain superfamily YP_2584 IPR006061 Solute-binding family 1, conserved site YP_2584 IPR026045 Ferric binding protein YP_2585 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2585 IPR035906 MetI-like superfamily YP_2586 IPR030287 Fe(3+) ions import ATP-binding protein FbpC YP_2586 IPR003593 AAA+ ATPase domain YP_2586 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2586 IPR008995 Molybdate/tungstate binding, C-terminal YP_2586 IPR017871 ABC transporter, conserved site YP_2586 IPR015853 ABC transporter, ferric cation import, FbpC YP_2586 IPR003439 ABC transporter-like YP_2588 IPR008514 Type VI secretion system effector, Hcp YP_2588 IPR036624 Hcp1-like superfamily YP_2590 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YP_2590 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE YP_2590 IPR006311 Twin-arginine translocation pathway, signal sequence YP_2590 IPR009010 Aspartate decarboxylase-like domain superfamily YP_2590 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YP_2590 IPR006656 Molybdopterin oxidoreductase YP_2590 IPR006657 Molybdopterin dinucleotide-binding domain YP_2591 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2591 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2591 IPR014297 Dimethylsulphoxide reductase, chain B YP_2592 IPR007059 DMSO reductase anchor subunit (DmsC) YP_2593 IPR020945 DMSO/Nitrate reductase chaperone YP_2593 IPR036411 TorD-like superfamily YP_2593 IPR026269 Tat proofreading chaperone DmsD-type YP_2593 IPR028611 Tat proofreading chaperone DmsD YP_2595 IPR008517 Protein of unknown function DUF799 YP_2597 IPR005534 Curli production assembly/transport component CsgG YP_2599 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YP_2599 IPR016174 Di-haem cytochrome, transmembrane YP_2600 IPR015424 Pyridoxal phosphate-dependent transferase YP_2600 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_2600 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_2600 IPR004839 Aminotransferase, class I/classII YP_2601 IPR027443 Isopenicillin N synthase-like YP_2601 IPR010856 Protein of unknown function DUF1479 YP_2602 IPR003836 Glucokinase YP_2604 IPR036390 Winged helix DNA-binding domain superfamily YP_2604 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2604 IPR000847 Transcription regulator HTH, LysR YP_2604 IPR005119 LysR, substrate-binding YP_2605 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_2605 IPR023210 NADP-dependent oxidoreductase domain YP_2607 IPR001046 NRAMP family YP_2608 IPR008276 Concentrative nucleoside transporter YP_2608 IPR011657 Concentrative nucleoside transporter C-terminal domain YP_2608 IPR002668 Concentrative nucleoside transporter N-terminal domain YP_2608 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain YP_2608 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial YP_2609 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding YP_2609 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_2609 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 YP_2609 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YP_2609 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial YP_2609 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YP_2609 IPR033910 Glutamyl-tRNA synthetase YP_2609 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YP_2613 IPR024530 Putative quorum-sensing-regulated virulence factor YP_2614 IPR033136 NAD-dependent DNA ligase, conserved site YP_2614 IPR001357 BRCT domain YP_2614 IPR036420 BRCT domain superfamily YP_2614 IPR041663 DisA/LigA, helix-hairpin-helix motif YP_2614 IPR018239 NAD-dependent DNA ligase, active site YP_2614 IPR001679 NAD-dependent DNA ligase YP_2614 IPR013839 NAD-dependent DNA ligase, adenylation YP_2614 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YP_2614 IPR012340 Nucleic acid-binding, OB-fold YP_2614 IPR004150 NAD-dependent DNA ligase, OB-fold YP_2614 IPR013840 NAD-dependent DNA ligase, N-terminal YP_2614 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type YP_2614 IPR010994 RuvA domain 2-like YP_2615 IPR007449 ZipA, C-terminal FtsZ-binding domain YP_2615 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily YP_2615 IPR011919 Cell division protein ZipA YP_2616 IPR022985 Sulfate transporter CysZ YP_2617 IPR001926 Pyridoxal-phosphate dependent enzyme YP_2617 IPR005856 Cysteine synthase YP_2617 IPR005859 Cysteine synthase CysK YP_2617 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YP_2617 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_2618 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YP_2618 IPR035895 HPr-like superfamily YP_2618 IPR000032 Phosphocarrier protein HPr-like YP_2618 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YP_2619 IPR024692 Phosphotransferase system, enzyme I YP_2619 IPR006318 Phosphotransferase system, enzyme I-like YP_2619 IPR008731 Phosphotransferase system, enzyme I N-terminal YP_2619 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YP_2619 IPR036618 PtsI, HPr-binding domain superfamily YP_2619 IPR008279 PEP-utilising enzyme, mobile domain YP_2619 IPR018274 PEP-utilising enzyme, active site YP_2619 IPR000121 PEP-utilising enzyme, C-terminal YP_2619 IPR036637 Phosphohistidine domain superfamily YP_2619 IPR040442 Pyruvate kinase-like domain superfamily YP_2619 IPR023151 PEP-utilising enzyme, conserved site YP_2620 IPR011055 Duplicated hybrid motif YP_2620 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 YP_2621 IPR036515 Transposase IS200-like superfamily YP_2621 IPR002686 Transposase IS200-like YP_2622 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_2622 IPR038515 CpxA, periplasmic domain superfamily YP_2622 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_2622 IPR032404 Two-component sensor protein CpxA, periplasmic domain YP_2622 IPR003594 Histidine kinase/HSP90-like ATPase YP_2622 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2622 IPR005467 Histidine kinase domain YP_2622 IPR003660 HAMP domain YP_2622 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_2623 IPR001789 Signal transduction response regulator, receiver domain YP_2623 IPR039420 Transcriptional regulatory protein WalR-like YP_2623 IPR011006 CheY-like superfamily YP_2623 IPR001867 OmpR/PhoB-type DNA-binding domain YP_2623 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2624 IPR030190 Macrolide export protein MacA YP_2624 IPR006143 RND efflux pump, membrane fusion protein YP_2624 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_2625 IPR003593 AAA+ ATPase domain YP_2625 IPR003838 ABC transporter permease protein domain YP_2625 IPR003439 ABC transporter-like YP_2625 IPR017871 ABC transporter, conserved site YP_2625 IPR017911 ABC transporter, macrolide export, ATP-binding domain YP_2625 IPR025857 MacB-like periplasmic core domain YP_2625 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2626 IPR023536 Coenzyme A disulphide reductase, staphyolococci YP_2626 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_2626 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YP_2626 IPR017758 Coenzyme A disulphide reductase YP_2626 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2626 IPR023753 FAD/NAD(P)-binding domain YP_2627 IPR038377 Sodium/glucose symporter superfamily YP_2627 IPR001734 Sodium/solute symporter YP_2630 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_2630 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_2630 IPR015424 Pyridoxal phosphate-dependent transferase YP_2630 IPR027619 Putative C-S lyase YP_2630 IPR004839 Aminotransferase, class I/classII YP_2632 IPR003594 Histidine kinase/HSP90-like ATPase YP_2632 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2632 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_2632 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_2632 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_2632 IPR003660 HAMP domain YP_2632 IPR005467 Histidine kinase domain YP_2633 IPR011006 CheY-like superfamily YP_2633 IPR016032 Signal transduction response regulator, C-terminal effector YP_2633 IPR001867 OmpR/PhoB-type DNA-binding domain YP_2633 IPR001789 Signal transduction response regulator, receiver domain YP_2633 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2633 IPR039420 Transcriptional regulatory protein WalR-like YP_2635 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_2635 IPR005856 Cysteine synthase YP_2635 IPR005858 Cysteine synthase CysM YP_2635 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YP_2635 IPR001926 Pyridoxal-phosphate dependent enzyme YP_2636 IPR005666 Sulphate transport system permease protein 1 YP_2636 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2636 IPR008995 Molybdate/tungstate binding, C-terminal YP_2636 IPR017871 ABC transporter, conserved site YP_2636 IPR003439 ABC transporter-like YP_2636 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal YP_2636 IPR003593 AAA+ ATPase domain YP_2637 IPR005667 Sulphate ABC transporter permease protein 2 YP_2637 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2637 IPR011866 Sulphate ABC transporter, permease protein CysW YP_2637 IPR035906 MetI-like superfamily YP_2638 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2638 IPR005667 Sulphate ABC transporter permease protein 2 YP_2638 IPR035906 MetI-like superfamily YP_2638 IPR011865 Sulphate ABC transporter, permease protein CysT YP_2639 IPR000957 Sulphate/thiosulphate-binding, conserved site YP_2639 IPR034408 Sulphate/thiosulphate-binding site YP_2639 IPR005669 Thiosulphate/Sulfate-binding protein YP_2640 IPR020846 Major facilitator superfamily domain YP_2640 IPR011701 Major facilitator superfamily YP_2640 IPR036259 MFS transporter superfamily YP_2640 IPR004742 Sialic acid transporter YP_2641 IPR001347 Sugar isomerase (SIS) YP_2641 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2641 IPR035472 RpiR-like, SIS domain YP_2641 IPR000281 Helix-turn-helix protein RpiR YP_2641 IPR009057 Homeobox-like domain superfamily YP_2643 IPR037012 YhcH/YjgK/YiaL superfamily YP_2643 IPR004375 YhcH/YjgK/YiaL family YP_2644 IPR023945 N-acetylmannosamine kinase, bacterial YP_2644 IPR000600 ROK family YP_2645 IPR001611 Leucine-rich repeat YP_2645 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YP_2645 IPR032675 Leucine-rich repeat domain superfamily YP_2646 IPR011060 Ribulose-phosphate binding barrel YP_2646 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase YP_2646 IPR013785 Aldolase-type TIM barrel YP_2647 IPR002220 DapA-like YP_2647 IPR020625 Schiff base-forming aldolase, active site YP_2647 IPR005264 N-acetylneuraminate lyase YP_2647 IPR013785 Aldolase-type TIM barrel YP_2648 IPR011008 Dimeric alpha-beta barrel YP_2648 IPR006314 Dyp-type peroxidase YP_2649 IPR038714 YfeY-like superfamily YP_2649 IPR010938 Protein of unknown function DUF1131 YP_2650 IPR036700 Bacterial OB-fold superfamily YP_2650 IPR005220 Bacterial OB-fold YP_2650 IPR016052 Bacteriophage 933W, L0136 YP_2651 IPR005546 Autotransporter beta-domain YP_2651 IPR012332 P22 tailspike-like, C-terminal domain superfamily YP_2651 IPR011050 Pectin lyase fold/virulence factor YP_2651 IPR006315 Outer membrane autotransporter barrel YP_2651 IPR004899 Pertactin, central region YP_2651 IPR030930 Adhesin of bacterial autotransporter system YP_2651 IPR003991 Pertactin virulence factor family YP_2651 IPR024973 ESPR domain YP_2651 IPR036709 Autotransporter beta-domain superfamily YP_2654 IPR023072 Acetyltransferase, YpeA YP_2654 IPR016181 Acyl-CoA N-acyltransferase YP_2654 IPR000182 GNAT domain YP_2655 IPR018375 Coproporphyrinogen III oxidase, conserved site YP_2655 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily YP_2655 IPR001260 Coproporphyrinogen III oxidase, aerobic YP_2656 IPR003791 Protein of unknown function UPF0178 YP_2657 IPR042112 Phosphate acetyltransferase, domain 2 YP_2657 IPR015884 Malic enzyme, conserved site YP_2657 IPR012301 Malic enzyme, N-terminal domain YP_2657 IPR037062 Malic enzyme, N-terminal domain superfamily YP_2657 IPR012302 Malic enzyme, NAD-binding YP_2657 IPR012188 NAD(P)-dependent malic enzyme YP_2657 IPR002505 Phosphate acetyl/butaryl transferase YP_2657 IPR042113 Phosphate acetyltransferase, domain 1 YP_2657 IPR036291 NAD(P)-binding domain superfamily YP_2658 IPR000086 NUDIX hydrolase domain YP_2658 IPR004385 Nucleoside diphosphate pyrophosphatase YP_2658 IPR015797 NUDIX hydrolase-like domain superfamily YP_2659 IPR024717 Denitrification system component NapC/NirT/NrfH YP_2659 IPR005126 NapC/NirT cytochrome c, N-terminal YP_2659 IPR011031 Multihaem cytochrome YP_2659 IPR038266 NapC/NirT cytochrome c superfamily YP_2659 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT YP_2659 IPR036280 Multiheme cytochrome superfamily YP_2660 IPR005591 Nitrate reductase cytochrome c-type subunit NapB YP_2660 IPR036280 Multiheme cytochrome superfamily YP_2660 IPR011031 Multihaem cytochrome YP_2661 IPR010051 Periplasmic nitrate reductase, large subunit YP_2661 IPR009010 Aspartate decarboxylase-like domain superfamily YP_2661 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YP_2661 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YP_2661 IPR041957 Nitrate reductase NapA-like, molybdopterin-binding domain YP_2661 IPR006656 Molybdopterin oxidoreductase YP_2661 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YP_2661 IPR006657 Molybdopterin dinucleotide-binding domain YP_2661 IPR006311 Twin-arginine translocation pathway, signal sequence YP_2662 IPR005623 Chaperone NapD, nitrate reductase assembly YP_2663 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2663 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2663 IPR004496 Ferredoxin-type protein NapF YP_2664 IPR001789 Signal transduction response regulator, receiver domain YP_2664 IPR000792 Transcription regulator LuxR, C-terminal YP_2664 IPR016032 Signal transduction response regulator, C-terminal effector YP_2664 IPR011006 CheY-like superfamily YP_2666 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_2666 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YP_2666 IPR001036 Acriflavin resistance protein YP_2668 IPR007404 LexA-binding, inner membrane-associated putative hydrolase YP_2670 IPR008995 Molybdate/tungstate binding, C-terminal YP_2670 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YP_2670 IPR017871 ABC transporter, conserved site YP_2670 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2670 IPR003439 ABC transporter-like YP_2670 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YP_2670 IPR003593 AAA+ ATPase domain YP_2670 IPR013611 Transport-associated OB, type 2 YP_2674 IPR006660 Arsenate reductase-like YP_2674 IPR036249 Thioredoxin-like superfamily YP_2674 IPR006504 Transcriptional regulator Spx/MgsR YP_2675 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria YP_2675 IPR011650 Peptidase M20, dimerisation domain YP_2675 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YP_2675 IPR036264 Bacterial exopeptidase dimerisation domain YP_2675 IPR002933 Peptidase M20 YP_2676 IPR003709 Peptidase M15B YP_2676 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily YP_2677 IPR020910 Uncharacterised protein family UPF0370 YP_2678 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA YP_2678 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain YP_2678 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal YP_2678 IPR038321 TmcA, C-terminal domain superfamily YP_2678 IPR032672 TmcA/NAT10/Kre33 YP_2678 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2678 IPR007807 Helicase domain YP_2678 IPR000182 GNAT domain YP_2678 IPR016181 Acyl-CoA N-acyltransferase YP_2679 IPR007382 Uncharacterised protein family UPF0756, transmembrame YP_2680 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative YP_2681 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase YP_2681 IPR033934 Bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide synthase YP_2681 IPR028923 SAICAR synthetase/ADE2, N-terminal YP_2681 IPR018236 SAICAR synthetase, conserved site YP_2682 IPR002686 Transposase IS200-like YP_2682 IPR036515 Transposase IS200-like superfamily YP_2683 IPR010653 NlpB/DapX lipoprotein YP_2683 IPR014524 Outer membrane protein assembly factor BamC YP_2683 IPR042268 Outer membrane protein assembly factor BamC, C-terminal YP_2684 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA YP_2684 IPR020624 Schiff base-forming aldolase, conserved site YP_2684 IPR020625 Schiff base-forming aldolase, active site YP_2684 IPR013785 Aldolase-type TIM barrel YP_2684 IPR002220 DapA-like YP_2685 IPR016867 Glycine cleavage system transcriptional repressor YP_2685 IPR002912 ACT domain YP_2686 IPR013766 Thioredoxin domain YP_2686 IPR036249 Thioredoxin-like superfamily YP_2686 IPR024706 Peroxiredoxin, AhpC-type YP_2686 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YP_2690 IPR002549 Transmembrane protein TqsA-like YP_2691 IPR001915 Peptidase M48 YP_2691 IPR030873 Beta-barrel assembly-enhancing protease YP_2691 IPR011716 Tetratricopeptide TPR-3 YP_2691 IPR011990 Tetratricopeptide-like helical domain superfamily YP_2692 IPR036249 Thioredoxin-like superfamily YP_2692 IPR006660 Arsenate reductase-like YP_2692 IPR006659 Arsenate reductase YP_2693 IPR020591 Chromosomal replication control, initiator DnaA-like YP_2693 IPR013317 Chromosomal replication initiator protein DnaA YP_2693 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2693 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae YP_2693 IPR017788 DnaA regulatory inactivator Hda YP_2694 IPR036515 Transposase IS200-like superfamily YP_2694 IPR002686 Transposase IS200-like YP_2695 IPR029057 Phosphoribosyltransferase-like YP_2695 IPR000836 Phosphoribosyltransferase domain YP_2695 IPR034332 Uracil phosphoribosyltransferase, bacterial-type YP_2695 IPR005765 Uracil phosphoribosyl transferase YP_2696 IPR036676 PurM-like, C-terminal domain superfamily YP_2696 IPR010918 PurM-like, C-terminal domain YP_2696 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase YP_2696 IPR036921 PurM-like, N-terminal domain superfamily YP_2696 IPR016188 PurM-like, N-terminal domain YP_2697 IPR004607 Phosphoribosylglycinamide formyltransferase YP_2697 IPR001555 Phosphoribosylglycinamide formyltransferase, active site YP_2697 IPR002376 Formyl transferase, N-terminal YP_2697 IPR036477 Formyl transferase, N-terminal domain superfamily YP_2698 IPR016181 Acyl-CoA N-acyltransferase YP_2698 IPR000182 GNAT domain YP_2700 IPR005670 Phosphate transport system permease protein 1 YP_2700 IPR003593 AAA+ ATPase domain YP_2700 IPR003439 ABC transporter-like YP_2700 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2700 IPR017871 ABC transporter, conserved site YP_2700 IPR015850 ABC transporter, phosphate import, PstB YP_2701 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2701 IPR005672 Phosphate transport system permease protein PstA YP_2701 IPR035906 MetI-like superfamily YP_2702 IPR011864 Phosphate ABC transporter, permease protein PstC YP_2702 IPR035906 MetI-like superfamily YP_2702 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2703 IPR001736 Phospholipase D/Transphosphatidylase YP_2703 IPR003414 Polyphosphate kinase YP_2703 IPR041108 Polyphosphate kinase, C-terminal domain 1 YP_2703 IPR036830 Polyphosphate kinase middle domain superfamily YP_2703 IPR025200 Polyphosphate kinase C-terminal domain 2 YP_2703 IPR024953 Polyphosphate kinase middle domain YP_2703 IPR036832 Polyphosphate kinase N-terminal domain superfamily YP_2703 IPR025198 Polyphosphate kinase N-terminal domain YP_2704 IPR003695 Ppx/GppA phosphatase YP_2704 IPR022371 Exopolyphosphatase YP_2704 IPR030673 Pyrophosphatase, GppA/Ppx-type YP_2706 IPR038048 Magnesium transporter MgtE, transmembrane domain YP_2706 IPR038076 MgtE, N-terminal domain superfamily YP_2706 IPR006668 Magnesium transporter, MgtE intracellular domain YP_2706 IPR000644 CBS domain YP_2706 IPR006669 Magnesium transporter MgtE YP_2706 IPR006667 SLC41 divalent cation transporters, integral membrane domain YP_2706 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily YP_2707 IPR018181 Heat shock protein 70, conserved site YP_2707 IPR013126 Heat shock protein 70 family YP_2707 IPR042054 YegD-like YP_2708 IPR035906 MetI-like superfamily YP_2708 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2709 IPR035906 MetI-like superfamily YP_2709 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2711 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_2711 IPR015424 Pyridoxal phosphate-dependent transferase YP_2711 IPR005814 Aminotransferase class-III YP_2711 IPR004632 4-aminobutyrate aminotransferase, bacterial YP_2711 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_2712 IPR036390 Winged helix DNA-binding domain superfamily YP_2712 IPR000524 Transcription regulator HTH, GntR YP_2712 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_2712 IPR015424 Pyridoxal phosphate-dependent transferase YP_2712 IPR004839 Aminotransferase, class I/classII YP_2712 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2713 IPR013611 Transport-associated OB, type 2 YP_2713 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YP_2713 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2713 IPR003593 AAA+ ATPase domain YP_2713 IPR008995 Molybdate/tungstate binding, C-terminal YP_2713 IPR017871 ABC transporter, conserved site YP_2713 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YP_2713 IPR003439 ABC transporter-like YP_2714 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YP_2714 IPR022824 Multidrug resistance protein MdtA YP_2714 IPR006143 RND efflux pump, membrane fusion protein YP_2715 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_2715 IPR001036 Acriflavin resistance protein YP_2715 IPR022831 Multidrug resistance protein MdtB YP_2716 IPR001036 Acriflavin resistance protein YP_2716 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_2716 IPR023931 Multidrug resistance protein MdtC YP_2717 IPR023721 Multidrug resistance protein MdtD YP_2717 IPR020846 Major facilitator superfamily domain YP_2717 IPR011701 Major facilitator superfamily YP_2717 IPR004638 Drug resistance transporter EmrB-like YP_2717 IPR036259 MFS transporter superfamily YP_2718 IPR005467 Histidine kinase domain YP_2718 IPR003660 HAMP domain YP_2718 IPR003594 Histidine kinase/HSP90-like ATPase YP_2718 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2718 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_2718 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_2718 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_2719 IPR016032 Signal transduction response regulator, C-terminal effector YP_2719 IPR011006 CheY-like superfamily YP_2719 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2719 IPR001867 OmpR/PhoB-type DNA-binding domain YP_2719 IPR001789 Signal transduction response regulator, receiver domain YP_2719 IPR039420 Transcriptional regulatory protein WalR-like YP_2720 IPR010879 Domain of unknown function DUF1508 YP_2720 IPR036913 YegP-like superfamily YP_2722 IPR022433 Lipid kinase YegS YP_2722 IPR005218 Diacylglycerol/lipid kinase YP_2722 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily YP_2722 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal YP_2722 IPR001206 Diacylglycerol kinase, catalytic domain YP_2723 IPR036501 Inhibitor of vertebrate lysozyme superfamily YP_2723 IPR014453 Inhibitor of vertebrate lysozyme YP_2725 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase YP_2725 IPR029056 Ribokinase-like YP_2725 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase YP_2728 IPR001207 Transposase, mutator type YP_2734 IPR008514 Type VI secretion system effector, Hcp YP_2734 IPR036624 Hcp1-like superfamily YP_2735 IPR036515 Transposase IS200-like superfamily YP_2735 IPR002686 Transposase IS200-like YP_2736 IPR029062 Class I glutamine amidotransferase-like YP_2736 IPR022955 GMP synthase YP_2736 IPR025777 GMP synthetase ATP pyrophosphatase domain YP_2736 IPR022310 NAD/GMP synthase YP_2736 IPR001674 GMP synthase, C-terminal YP_2736 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_2736 IPR017926 Glutamine amidotransferase YP_2736 IPR004739 GMP synthase, glutamine amidotransferase YP_2737 IPR000644 CBS domain YP_2737 IPR001093 IMP dehydrogenase/GMP reductase YP_2737 IPR015875 IMP dehydrogenase / GMP reductase, conserved site YP_2737 IPR005990 Inosine-5'-monophosphate dehydrogenase YP_2737 IPR013785 Aldolase-type TIM barrel YP_2738 IPR025824 OB-fold nucleic acid binding domain YP_2738 IPR020579 Exonuclease VII, large subunit, C-terminal YP_2738 IPR003753 Exonuclease VII, large subunit YP_2739 IPR029037 YfgJ-like YP_2739 IPR010807 Protein of unknown function DUF1407 YP_2741 IPR032859 GTPase Der, C-terminal KH-domain-like YP_2741 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2741 IPR005225 Small GTP-binding protein domain YP_2741 IPR031166 EngA-type guanine nucleotide-binding (G) domain YP_2741 IPR016484 GTP-binding protein EngA YP_2741 IPR006073 GTP binding domain YP_2741 IPR015946 K homology domain-like, alpha/beta YP_2742 IPR015943 WD40/YVTN repeat-like-containing domain superfamily YP_2742 IPR017687 Outer membrane protein assembly factor BamB YP_2742 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily YP_2742 IPR002372 Pyrrolo-quinoline quinone repeat YP_2742 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YP_2743 IPR011990 Tetratricopeptide-like helical domain superfamily YP_2743 IPR018704 Tetratricopeptide repeat-like domain YP_2743 IPR026039 Uncharacterised protein family UPF0070 YP_2744 IPR033656 Histidyl-anticodon-binding YP_2744 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit YP_2744 IPR006195 Aminoacyl-tRNA synthetase, class II YP_2744 IPR015807 Histidine-tRNA ligase YP_2744 IPR036621 Anticodon-binding domain superfamily YP_2744 IPR004154 Anticodon-binding YP_2744 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain YP_2745 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YP_2745 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial YP_2745 IPR011005 Dihydropteroate synthase-like YP_2745 IPR036849 Enolase-like, C-terminal domain superfamily YP_2746 IPR023690 Cytoskeleton protein RodZ YP_2746 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_2746 IPR025194 Domain of unknown function DUF4115 YP_2746 IPR001387 Cro/C1-type helix-turn-helix domain YP_2748 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr YP_2748 IPR027492 Dual-specificity RNA methyltransferase RlmN YP_2748 IPR040072 Methyltransferase (Class A) YP_2748 IPR013785 Aldolase-type TIM barrel YP_2748 IPR007197 Radical SAM YP_2749 IPR034907 Nucleoside diphosphate kinase-like domain YP_2749 IPR036850 Nucleoside diphosphate kinase-like domain superfamily YP_2749 IPR023005 Nucleoside diphosphate kinase, active site YP_2749 IPR001564 Nucleoside diphosphate kinase YP_2752 IPR036709 Autotransporter beta-domain superfamily YP_2752 IPR003991 Pertactin virulence factor family YP_2752 IPR030930 Adhesin of bacterial autotransporter system YP_2752 IPR004899 Pertactin, central region YP_2752 IPR012332 P22 tailspike-like, C-terminal domain superfamily YP_2752 IPR011050 Pectin lyase fold/virulence factor YP_2752 IPR005546 Autotransporter beta-domain YP_2752 IPR006315 Outer membrane autotransporter barrel YP_2754 IPR001207 Transposase, mutator type YP_2763 IPR012337 Ribonuclease H-like superfamily YP_2763 IPR036397 Ribonuclease H superfamily YP_2763 IPR001584 Integrase, catalytic core YP_2763 IPR006120 Resolvase, HTH domain YP_2763 IPR017894 HTH domain, IS21 transposase-type YP_2764 IPR001270 ClpA/B family YP_2764 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_2764 IPR002611 IstB-like ATP-binding protein YP_2764 IPR003593 AAA+ ATPase domain YP_2764 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2766 IPR038271 Purine-cytosine permease superfamily YP_2766 IPR012681 Nucleobase cation symporter-1, NCS1 YP_2766 IPR001248 Purine-cytosine permease YP_2767 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain YP_2767 IPR012337 Ribonuclease H-like superfamily YP_2767 IPR006309 DNA polymerase 3, epsilon subunit YP_2767 IPR013520 Exonuclease, RNase T/DNA polymerase III YP_2767 IPR036397 Ribonuclease H superfamily YP_2768 IPR022892 Ribonuclease HI YP_2768 IPR012337 Ribonuclease H-like superfamily YP_2768 IPR002156 Ribonuclease H domain YP_2768 IPR036397 Ribonuclease H superfamily YP_2769 IPR013216 Methyltransferase type 11 YP_2769 IPR026669 Arsenite methyltransferase-like YP_2769 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_2770 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain YP_2770 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_2770 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain YP_2770 IPR001279 Metallo-beta-lactamase YP_2770 IPR017782 Hydroxyacylglutathione hydrolase YP_2771 IPR023346 Lysozyme-like domain superfamily YP_2771 IPR008258 Transglycosylase SLT domain 1 YP_2771 IPR000189 Prokaryotic transglycosylase, active site YP_2771 IPR018392 LysM domain YP_2771 IPR036779 LysM domain superfamily YP_2772 IPR022958 Uncharacterised protein family UPF0294 YP_2772 IPR005135 Endonuclease/exonuclease/phosphatase YP_2772 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YP_2774 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_2774 IPR023210 NADP-dependent oxidoreductase domain YP_2774 IPR018170 Aldo/keto reductase, conserved site YP_2774 IPR020471 Aldo/keto reductase YP_2775 IPR036412 HAD-like superfamily YP_2775 IPR006549 HAD-superfamily hydrolase,subfamily IIIA YP_2775 IPR023214 HAD superfamily YP_2775 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase YP_2775 IPR006543 Histidinol-phosphate phosphatase YP_2776 IPR017871 ABC transporter, conserved site YP_2776 IPR018449 NIL domain YP_2776 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal YP_2776 IPR003439 ABC transporter-like YP_2776 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria YP_2776 IPR026253 Methionine import ATP-binding protein MetN YP_2776 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain YP_2776 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2776 IPR003593 AAA+ ATPase domain YP_2777 IPR035906 MetI-like superfamily YP_2777 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2778 IPR004872 Lipoprotein NlpA family YP_2779 IPR030852 Outer membrane lipoprotein RcsF YP_2780 IPR023370 TrmO-like, N-terminal domain YP_2780 IPR036414 YaeB, N-terminal domain superfamily YP_2780 IPR041369 TrmO, C-terminal YP_2780 IPR023368 Uncharacterised protein family UPF0066, conserved site YP_2780 IPR036413 YaeB-like superfamily YP_2780 IPR040372 YaeB-like YP_2781 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 YP_2781 IPR033730 Prokaryote proline-tRNA ligase core domain YP_2781 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily YP_2781 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) YP_2781 IPR004154 Anticodon-binding YP_2781 IPR006195 Aminoacyl-tRNA synthetase, class II YP_2781 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type YP_2781 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain YP_2781 IPR036621 Anticodon-binding domain superfamily YP_2781 IPR002316 Proline-tRNA ligase, class IIa YP_2782 IPR038139 NlpE, C-terminal domain superfamily YP_2782 IPR033450 NlpE, C-terminal OB domain YP_2782 IPR007298 Copper resistance lipoprotein NlpE YP_2783 IPR000352 Peptide chain release factor class I YP_2784 IPR011335 Restriction endonuclease type II-like YP_2784 IPR038590 YaeQ superfamily YP_2784 IPR009822 YaeQ YP_2785 IPR009624 Uncharacterised protein family UPF0253 YP_2786 IPR009778 Modulator of Rho-dependent transcription termination YP_2786 IPR023534 Rof/RNase P-like YP_2786 IPR038626 Rof-like superfamily YP_2787 IPR036909 Cytochrome c-like domain superfamily YP_2787 IPR009056 Cytochrome c-like domain YP_2787 IPR008168 Cytochrome c, class IC YP_2788 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal YP_2788 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain YP_2788 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal YP_2788 IPR012094 tRNA(Ile)-lysidine synthase YP_2788 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal YP_2788 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_2789 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YP_2789 IPR037478 YwkD-like domain YP_2789 IPR037523 Vicinal oxygen chelate (VOC) domain YP_2789 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YP_2790 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal YP_2790 IPR029045 ClpP/crotonase-like domain superfamily YP_2790 IPR001095 Acetyl-CoA carboxylase, alpha subunit YP_2791 IPR004805 DNA polymerase III, alpha subunit YP_2791 IPR016195 Polymerase/histidinol phosphatase-like YP_2791 IPR003141 Polymerase/histidinol phosphatase, N-terminal YP_2791 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain YP_2791 IPR004013 PHP domain YP_2791 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YP_2791 IPR029460 DNA polymerase, helix-hairpin-helix motif YP_2791 IPR040982 DNA polymerase III alpha subunit finger domain YP_2791 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain YP_2792 IPR024567 Ribonuclease HII/HIII domain YP_2792 IPR012337 Ribonuclease H-like superfamily YP_2792 IPR036397 Ribonuclease H superfamily YP_2792 IPR001352 Ribonuclease HII/HIII YP_2792 IPR022898 Ribonuclease HII YP_2793 IPR003835 Glycosyl transferase, family 19 YP_2794 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal YP_2794 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily YP_2794 IPR001451 Hexapeptide repeat YP_2794 IPR018357 Hexapeptide transferase, conserved site YP_2794 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase YP_2794 IPR011004 Trimeric LpxA-like superfamily YP_2795 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YP_2795 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YP_2795 IPR029069 HotDog domain superfamily YP_2796 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region YP_2796 IPR001451 Hexapeptide repeat YP_2796 IPR018357 Hexapeptide transferase, conserved site YP_2796 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD YP_2796 IPR011004 Trimeric LpxA-like superfamily YP_2797 IPR005632 Chaperone protein Skp YP_2797 IPR024930 Skp domain superfamily YP_2798 IPR034746 POTRA domain YP_2798 IPR023707 Outer membrane protein assembly factor BamA YP_2798 IPR000184 Bacterial surface antigen (D15) YP_2798 IPR010827 POTRA domain, BamA/TamA-like YP_2798 IPR039910 Surface antigen D15-like YP_2799 IPR041489 PDZ domain 6 YP_2799 IPR036034 PDZ superfamily YP_2799 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase YP_2799 IPR008915 Peptidase M50 YP_2799 IPR001478 PDZ domain YP_2800 IPR000374 Phosphatidate cytidylyltransferase YP_2801 IPR001441 Decaprenyl diphosphate synthase-like YP_2801 IPR036424 Decaprenyl diphosphate synthase-like superfamily YP_2801 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site YP_2802 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal YP_2802 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal YP_2802 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_2802 IPR036291 NAD(P)-binding domain superfamily YP_2802 IPR036169 DXP reductoisomerase, C-terminal domain superfamily YP_2802 IPR026877 DXP reductoisomerase C-terminal domain YP_2804 IPR023584 Ribosome recycling factor domain YP_2804 IPR002661 Ribosome recycling factor YP_2804 IPR036191 RRF superfamily YP_2805 IPR036393 Acetylglutamate kinase-like superfamily YP_2805 IPR001048 Aspartate/glutamate/uridylate kinase YP_2805 IPR011817 Uridylate kinase YP_2805 IPR015963 Uridylate kinase, bacteria YP_2806 IPR036402 Elongation factor Ts, dimerisation domain superfamily YP_2806 IPR001816 Translation elongation factor EFTs/EF1B YP_2806 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation YP_2806 IPR018101 Translation elongation factor Ts, conserved site YP_2806 IPR009060 UBA-like superfamily YP_2807 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily YP_2807 IPR001865 Ribosomal protein S2 YP_2807 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid YP_2807 IPR018130 Ribosomal protein S2, conserved site YP_2808 IPR036005 Creatinase/aminopeptidase-like YP_2808 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 YP_2808 IPR001714 Peptidase M24, methionine aminopeptidase YP_2808 IPR000994 Peptidase M24 YP_2809 IPR002934 Polymerase, nucleotidyl transferase domain YP_2809 IPR003607 HD/PDEase domain YP_2809 IPR006674 HD domain YP_2809 IPR002912 ACT domain YP_2809 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YP_2809 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme YP_2810 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily YP_2810 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 YP_2810 IPR018357 Hexapeptide transferase, conserved site YP_2810 IPR001451 Hexapeptide repeat YP_2810 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family YP_2810 IPR011004 Trimeric LpxA-like superfamily YP_2811 IPR020911 Uncharacterised protein family UPF0325 YP_2812 IPR001094 Flavodoxin-like YP_2812 IPR008254 Flavodoxin/nitric oxide synthase YP_2812 IPR029039 Flavoprotein-like superfamily YP_2813 IPR020103 Pseudouridine synthase, catalytic domain superfamily YP_2813 IPR006145 Pseudouridine synthase, RsuA/RluA YP_2813 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YP_2814 IPR036814 YqcC-like superfamily YP_2814 IPR007384 Protein of unknown function UCP006257 YP_2814 IPR023376 YqcC-like domain YP_2815 IPR002686 Transposase IS200-like YP_2815 IPR036515 Transposase IS200-like superfamily YP_2816 IPR009948 Syd YP_2816 IPR038228 Syd superfamily YP_2817 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF YP_2817 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal YP_2817 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 YP_2818 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily YP_2818 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal YP_2818 IPR021826 Domain of unknown function DUF3412 YP_2818 IPR031100 LOG family YP_2819 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YP_2819 IPR022895 Flap endonuclease Xni YP_2819 IPR020045 DNA polymerase I-like, H3TH domain YP_2819 IPR038969 Flap endonuclease YP_2819 IPR008918 Helix-hairpin-helix motif, class 2 YP_2819 IPR002421 5'-3' exonuclease, N-terminal YP_2819 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YP_2819 IPR029060 PIN-like domain superfamily YP_2820 IPR040739 RlmM ferredoxin-like domain YP_2820 IPR011224 Ribosomal RNA large subunit methyltransferase M YP_2820 IPR002877 Ribosomal RNA methyltransferase FtsJ domain YP_2820 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_2821 IPR006696 Protein of unknown function DUF423 YP_2822 IPR036390 Winged helix DNA-binding domain superfamily YP_2822 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2822 IPR000847 Transcription regulator HTH, LysR YP_2822 IPR005119 LysR, substrate-binding YP_2823 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YP_2823 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_2823 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_2823 IPR015424 Pyridoxal phosphate-dependent transferase YP_2823 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA YP_2823 IPR000192 Aminotransferase class V domain YP_2824 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE YP_2824 IPR003808 Fe-S metabolism associated domain, SufE-like YP_2825 IPR035985 Ubiquitin-activating enzyme YP_2825 IPR000594 THIF-type NAD/FAD binding fold YP_2826 IPR034654 MltA, 3D domain YP_2826 IPR036908 RlpA-like domain superfamily YP_2826 IPR010611 3D domain YP_2826 IPR026044 Membrane-bound lytic murein transglycosylase A YP_2826 IPR005300 Lytic transglycosylase MltA, domain B YP_2827 IPR006311 Twin-arginine translocation pathway, signal sequence YP_2827 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain YP_2827 IPR021731 AMIN domain YP_2828 IPR016181 Acyl-CoA N-acyltransferase YP_2828 IPR036393 Acetylglutamate kinase-like superfamily YP_2828 IPR010167 Amino-acid N-acetyltransferase YP_2828 IPR033719 N-acetylglutamate synthase, kinase-like domain YP_2828 IPR000182 GNAT domain YP_2828 IPR001048 Aspartate/glutamate/uridylate kinase YP_2829 IPR017894 HTH domain, IS21 transposase-type YP_2829 IPR006120 Resolvase, HTH domain YP_2829 IPR012337 Ribonuclease H-like superfamily YP_2829 IPR036397 Ribonuclease H superfamily YP_2829 IPR001584 Integrase, catalytic core YP_2830 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2830 IPR002611 IstB-like ATP-binding protein YP_2830 IPR001270 ClpA/B family YP_2830 IPR003593 AAA+ ATPase domain YP_2830 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_2832 IPR015177 Lyase, catalytic YP_2832 IPR003159 Polysaccharide lyase family 8, central domain YP_2832 IPR004103 Polysaccharide lyase family 8, C-terminal YP_2832 IPR011071 Polysaccharide lyase family 8-like, C-terminal YP_2832 IPR015176 Lyase, N-terminal YP_2832 IPR024200 Chondroitin sulfate ABC endolyase YP_2832 IPR008979 Galactose-binding-like domain superfamily YP_2832 IPR039174 Chondroitin sulfate ABC lyase YP_2832 IPR008929 Chondroitin AC/alginate lyase YP_2832 IPR011013 Galactose mutarotase-like domain superfamily YP_2832 IPR014718 Glycoside hydrolase-type carbohydrate-binding YP_2837 IPR001765 Carbonic anhydrase YP_2837 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site YP_2837 IPR036874 Carbonic anhydrase superfamily YP_2840 IPR038591 NolW-like superfamily YP_2840 IPR001775 GspD/PilQ family YP_2840 IPR005644 NolW-like YP_2840 IPR013356 Type II secretion system GspD YP_2840 IPR004846 Type II/III secretion system YP_2840 IPR004845 Type II secretion system GspD, conserved site YP_2842 IPR042094 Type II secretion system F domain superfamily YP_2842 IPR018076 Type II secretion system F domain YP_2842 IPR001992 Type II secretion system conserved site YP_2842 IPR003004 GspF/PilC family YP_2842 IPR011850 General secretion pathway protein F YP_2843 IPR010054 General secretion pathway protein G YP_2843 IPR013545 Type II secretion system protein G YP_2843 IPR012902 Prokaryotic N-terminal methylation site YP_2843 IPR000983 Bacterial general secretion pathway protein G-type pilin YP_2845 IPR010052 Type II secretion system protein I YP_2845 IPR003413 Type II secretion system protein I domain YP_2845 IPR012902 Prokaryotic N-terminal methylation site YP_2850 IPR000045 Prepilin type IV endopeptidase, peptidase domain YP_2850 IPR010627 Peptidase A24A, N-terminal YP_2850 IPR014032 Peptidase A24A, prepilin type IV, bacterial YP_2853 IPR001207 Transposase, mutator type YP_2855 IPR004090 Chemotaxis methyl-accepting receptor YP_2855 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YP_2855 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YP_2855 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YP_2855 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YP_2855 IPR003660 HAMP domain YP_2858 IPR036390 Winged helix DNA-binding domain superfamily YP_2858 IPR005119 LysR, substrate-binding YP_2858 IPR000847 Transcription regulator HTH, LysR YP_2858 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2859 IPR020846 Major facilitator superfamily domain YP_2859 IPR011701 Major facilitator superfamily YP_2859 IPR036259 MFS transporter superfamily YP_2860 IPR005119 LysR, substrate-binding YP_2860 IPR037414 Transcriptional activator protein LysR, PBP2 domain YP_2860 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2860 IPR036390 Winged helix DNA-binding domain superfamily YP_2860 IPR000847 Transcription regulator HTH, LysR YP_2861 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal YP_2861 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YP_2861 IPR000183 Ornithine/DAP/Arg decarboxylase YP_2861 IPR029066 PLP-binding barrel YP_2861 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YP_2861 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YP_2861 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal YP_2861 IPR002986 Diaminopimelate decarboxylase, LysA YP_2862 IPR000843 LacI-type HTH domain YP_2862 IPR028082 Periplasmic binding protein-like I YP_2862 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_2863 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase YP_2863 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YP_2863 IPR006656 Molybdopterin oxidoreductase YP_2863 IPR006657 Molybdopterin dinucleotide-binding domain YP_2863 IPR009010 Aspartate decarboxylase-like domain superfamily YP_2864 IPR042099 AMP-dependent synthetase-like superfamily YP_2864 IPR002123 Phospholipid/glycerol acyltransferase YP_2864 IPR023775 Bifunctional protein Aas YP_2864 IPR020845 AMP-binding, conserved site YP_2864 IPR000873 AMP-dependent synthetase/ligase YP_2864 IPR025110 AMP-binding enzyme, C-terminal domain YP_2865 IPR036259 MFS transporter superfamily YP_2865 IPR023727 Lysophospholipid transporter LplT YP_2865 IPR011701 Major facilitator superfamily YP_2868 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_2868 IPR023210 NADP-dependent oxidoreductase domain YP_2868 IPR020471 Aldo/keto reductase YP_2869 IPR004230 DNA mismatch repair protein MutH YP_2869 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II YP_2869 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily YP_2869 IPR011335 Restriction endonuclease type II-like YP_2872 IPR015797 NUDIX hydrolase-like domain superfamily YP_2872 IPR020084 NUDIX hydrolase, conserved site YP_2872 IPR022927 RNA pyrophosphohydrolase RppH YP_2872 IPR000086 NUDIX hydrolase domain YP_2872 IPR020476 NUDIX hydrolase YP_2873 IPR006318 Phosphotransferase system, enzyme I-like YP_2873 IPR003018 GAF domain YP_2873 IPR036637 Phosphohistidine domain superfamily YP_2873 IPR036618 PtsI, HPr-binding domain superfamily YP_2873 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YP_2873 IPR040442 Pyruvate kinase-like domain superfamily YP_2873 IPR023151 PEP-utilising enzyme, conserved site YP_2873 IPR000121 PEP-utilising enzyme, C-terminal YP_2873 IPR018274 PEP-utilising enzyme, active site YP_2873 IPR008279 PEP-utilising enzyme, mobile domain YP_2873 IPR029016 GAF-like domain superfamily YP_2873 IPR008731 Phosphotransferase system, enzyme I N-terminal YP_2874 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt YP_2875 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily YP_2875 IPR020940 Thymidylate synthase, active site YP_2875 IPR000398 Thymidylate synthase YP_2875 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain YP_2881 IPR013986 DExx box DNA helicase domain superfamily YP_2881 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2881 IPR041500 RecC, C-terminal YP_2881 IPR011335 Restriction endonuclease type II-like YP_2881 IPR006697 RecBCD enzyme subunit RecC YP_2882 IPR001431 Peptidase M16, zinc-binding site YP_2882 IPR007863 Peptidase M16, C-terminal YP_2882 IPR032632 Peptidase M16, middle/third domain YP_2882 IPR011765 Peptidase M16, N-terminal YP_2882 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YP_2883 IPR034739 UvrD/AddA helicase, N-terminal YP_2883 IPR011604 Exonuclease, phage-type/RecB, C-terminal YP_2883 IPR014016 UvrD-like helicase, ATP-binding domain YP_2883 IPR011335 Restriction endonuclease type II-like YP_2883 IPR014017 UvrD-like DNA helicase, C-terminal YP_2883 IPR004586 RecBCD enzyme subunit RecB YP_2883 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type YP_2883 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2883 IPR000212 DNA helicase, UvrD/REP type YP_2884 IPR027785 UvrD-like helicase C-terminal domain YP_2884 IPR041851 RecBCD enzyme subunit RecD, N-terminal domain YP_2884 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2884 IPR006344 RecBCD enzyme subunit RecD YP_2884 IPR003593 AAA+ ATPase domain YP_2885 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2885 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_2885 IPR001270 ClpA/B family YP_2885 IPR003593 AAA+ ATPase domain YP_2885 IPR002611 IstB-like ATP-binding protein YP_2886 IPR006120 Resolvase, HTH domain YP_2886 IPR001584 Integrase, catalytic core YP_2886 IPR017894 HTH domain, IS21 transposase-type YP_2886 IPR012337 Ribonuclease H-like superfamily YP_2886 IPR036397 Ribonuclease H superfamily YP_2887 IPR032808 DoxX family YP_2889 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III YP_2890 IPR010279 Inner membrane protein YqjD/ElaB YP_2893 IPR027398 SecD export protein N-terminal TM domain YP_2893 IPR026574 Modulator protein MzrA YP_2894 IPR032818 DedA family YP_2894 IPR032816 SNARE associated Golgi protein YP_2896 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_2896 IPR000524 Transcription regulator HTH, GntR YP_2896 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2896 IPR036390 Winged helix DNA-binding domain superfamily YP_2896 IPR011711 GntR, C-terminal YP_2897 IPR011701 Major facilitator superfamily YP_2897 IPR020846 Major facilitator superfamily domain YP_2897 IPR036259 MFS transporter superfamily YP_2899 IPR003766 Uronate isomerase YP_2899 IPR032466 Metal-dependent hydrolase YP_2900 IPR013118 Mannitol dehydrogenase, C-terminal YP_2900 IPR023668 Altronate oxidoreductase YP_2900 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YP_2900 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YP_2900 IPR013131 Mannitol dehydrogenase, N-terminal YP_2900 IPR036291 NAD(P)-binding domain superfamily YP_2901 IPR007392 D-galactarate/Altronate dehydratase, C-terminal YP_2901 IPR013974 SAF domain YP_2902 IPR019629 Uncharacterised protein family HI1736/YgjV YP_2902 IPR026267 Inner membrane protein YgjV YP_2903 IPR002686 Transposase IS200-like YP_2903 IPR036515 Transposase IS200-like superfamily YP_2904 IPR023025 Serine/threonine transporter SstT YP_2904 IPR036458 Sodium:dicarboxylate symporter superfamily YP_2904 IPR001991 Sodium:dicarboxylate symporter YP_2905 IPR036291 NAD(P)-binding domain superfamily YP_2905 IPR000683 Oxidoreductase, N-terminal YP_2906 IPR002725 Protein of unknown function DUF45 YP_2907 IPR011050 Pectin lyase fold/virulence factor YP_2907 IPR006315 Outer membrane autotransporter barrel YP_2907 IPR036709 Autotransporter beta-domain superfamily YP_2907 IPR005546 Autotransporter beta-domain YP_2908 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YP_2908 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD YP_2908 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_2908 IPR007848 Methyltransferase small domain YP_2909 IPR023753 FAD/NAD(P)-binding domain YP_2909 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2909 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_2909 IPR013785 Aldolase-type TIM barrel YP_2910 IPR005325 Protein of unknown function DUF308, membrane YP_2916 IPR003325 TerD domain YP_2917 IPR036465 von Willebrand factor A-like domain superfamily YP_2917 IPR002035 von Willebrand factor, type A YP_2917 IPR011392 Tellurite resistance, TerY YP_2918 IPR005565 Haemolysin activator HlyB, C-terminal YP_2918 IPR034746 POTRA domain YP_2918 IPR035251 ShlB, POTRA domain YP_2918 IPR027282 Two partner secretion pathway transporter YP_2918 IPR013686 Polypeptide-transport-associated, ShlB-type YP_2919 IPR006914 VENN motif-containing domain YP_2919 IPR011050 Pectin lyase fold/virulence factor YP_2919 IPR012334 Pectin lyase fold YP_2919 IPR025157 Hemagglutinin repeat YP_2919 IPR008638 Filamentous haemagglutinin, N-terminal YP_2919 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2919 IPR024973 ESPR domain YP_2921 IPR024973 ESPR domain YP_2921 IPR006914 VENN motif-containing domain YP_2921 IPR011050 Pectin lyase fold/virulence factor YP_2921 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2921 IPR008638 Filamentous haemagglutinin, N-terminal YP_2921 IPR012334 Pectin lyase fold YP_2921 IPR025157 Hemagglutinin repeat YP_2923 IPR024973 ESPR domain YP_2923 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2923 IPR011050 Pectin lyase fold/virulence factor YP_2923 IPR025157 Hemagglutinin repeat YP_2923 IPR012334 Pectin lyase fold YP_2923 IPR006914 VENN motif-containing domain YP_2923 IPR008638 Filamentous haemagglutinin, N-terminal YP_2927 IPR003439 ABC transporter-like YP_2927 IPR003593 AAA+ ATPase domain YP_2927 IPR040582 MalK, OB fold domain YP_2927 IPR017871 ABC transporter, conserved site YP_2927 IPR008995 Molybdate/tungstate binding, C-terminal YP_2927 IPR005116 Transport-associated OB, type 1 YP_2927 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2928 IPR008928 Six-hairpin glycosidase superfamily YP_2928 IPR012341 Six-hairpin glycosidase-like superfamily YP_2928 IPR033432 Glycosyl hydrolase 36, catalytic domain YP_2929 IPR028082 Periplasmic binding protein-like I YP_2929 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_2929 IPR000843 LacI-type HTH domain YP_2930 IPR006059 Bacterial extracellular solute-binding protein YP_2931 IPR035906 MetI-like superfamily YP_2931 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2932 IPR035906 MetI-like superfamily YP_2932 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_2934 IPR026891 Fibronectin type III-like domain YP_2934 IPR001764 Glycoside hydrolase, family 3, N-terminal YP_2934 IPR002772 Glycoside hydrolase family 3 C-terminal domain YP_2934 IPR013783 Immunoglobulin-like fold YP_2934 IPR017853 Glycoside hydrolase superfamily YP_2934 IPR019800 Glycoside hydrolase, family 3, active site YP_2934 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily YP_2934 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily YP_2936 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein YP_2937 IPR005694 Efflux pump membrane protein YP_2937 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_2937 IPR030196 Multidrug resistance protein MdtN YP_2944 IPR006056 RidA family YP_2944 IPR019897 RidA, conserved site YP_2944 IPR035959 RutC-like superfamily YP_2944 IPR006175 YjgF/YER057c/UK114 family YP_2948 IPR000847 Transcription regulator HTH, LysR YP_2948 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2948 IPR005119 LysR, substrate-binding YP_2948 IPR036390 Winged helix DNA-binding domain superfamily YP_2956 IPR001207 Transposase, mutator type YP_2958 IPR014284 RNA polymerase sigma-70 like domain YP_2958 IPR007631 RNA polymerase sigma factor 70, non-essential domain YP_2958 IPR007127 RNA polymerase sigma factor 70, region 1.1 YP_2958 IPR009042 RNA polymerase sigma-70 region 1.2 YP_2958 IPR013325 RNA polymerase sigma factor, region 2 YP_2958 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_2958 IPR007630 RNA polymerase sigma-70 region 4 YP_2958 IPR012760 RNA polymerase sigma factor RpoD, C-terminal YP_2958 IPR028630 RNA polymerase sigma factor RpoD YP_2958 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2958 IPR007624 RNA polymerase sigma-70 region 3 YP_2958 IPR000943 RNA polymerase sigma-70 YP_2958 IPR042189 Sigma-70 factor, region 1.1 superfamily YP_2958 IPR007627 RNA polymerase sigma-70 region 2 YP_2959 IPR002694 Zinc finger, CHC2-type YP_2959 IPR006295 DNA primase, DnaG YP_2959 IPR013173 DNA primase DnaG, DnaB-binding domain YP_2959 IPR036977 DNA Primase, CHC2-type zinc finger YP_2959 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YP_2959 IPR006171 TOPRIM domain YP_2959 IPR019475 DNA primase, DnaB-helicase binding domain YP_2959 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily YP_2959 IPR034151 Bacterial DnaG primase, TOPRIM domain YP_2959 IPR030846 DNA primase DnaG, bacteria YP_2959 IPR013264 DNA primase, catalytic core, N-terminal YP_2960 IPR018278 Ribosomal protein S21, conserved site YP_2960 IPR038380 Ribosomal protein S21 superfamily YP_2960 IPR001911 Ribosomal protein S21 YP_2961 IPR017860 Peptidase M22, conserved site YP_2961 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD YP_2961 IPR000905 Gcp-like domain YP_2961 IPR017861 Kae1/TsaD family YP_2962 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY YP_2963 IPR006156 Dihydroneopterin aldolase YP_2963 IPR006157 Dihydroneopterin aldolase/epimerase domain YP_2964 IPR003824 Undecaprenyl-diphosphatase UppP YP_2965 IPR006674 HD domain YP_2965 IPR002646 Poly A polymerase, head domain YP_2965 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain YP_2965 IPR012006 tRNA nucleotidyltransferase, proteobacteria YP_2965 IPR003607 HD/PDEase domain YP_2966 IPR016476 SH3 domain protein YP_2966 IPR003646 SH3-like domain, bacterial-type YP_2967 IPR007899 CHAD domain YP_2967 IPR033469 CYTH-like domain superfamily YP_2967 IPR023577 CYTH domain YP_2967 IPR039013 Inorganic triphosphatase YgiF YP_2968 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YP_2968 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain YP_2968 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme YP_2969 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_2969 IPR011914 RfaE bifunctional protein, domain II YP_2969 IPR011913 RfaE bifunctional protein, domain I YP_2969 IPR011611 Carbohydrate kinase PfkB YP_2969 IPR029056 Ribokinase-like YP_2969 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YP_2969 IPR023030 Bifunctional protein HldE YP_2969 IPR004821 Cytidyltransferase-like domain YP_2970 IPR002293 Amino acid/polyamine transporter I YP_2971 IPR007475 Ubiquinone biosynthesis accessory factor UbiK YP_2973 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YP_2973 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB YP_2974 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YP_2974 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type YP_2975 IPR016185 Pre-ATP-grasp domain superfamily YP_2975 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain YP_2976 IPR009576 Biofilm formation YgiB YP_2978 IPR010130 Type I secretion outer membrane protein, TolC YP_2978 IPR003423 Outer membrane efflux protein YP_2979 IPR000086 NUDIX hydrolase domain YP_2979 IPR020084 NUDIX hydrolase, conserved site YP_2979 IPR015797 NUDIX hydrolase-like domain superfamily YP_2979 IPR004385 Nucleoside diphosphate pyrophosphatase YP_2980 IPR009659 Protein of unknown function DUF1249 YP_2981 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YP_2981 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA YP_2981 IPR029052 Metallo-dependent phosphatase-like YP_2982 IPR029058 Alpha/Beta hydrolase fold YP_2982 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YP_2983 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative YP_2983 IPR020568 Ribosomal protein S5 domain 2-type fold YP_2983 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 YP_2983 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2983 IPR002288 DNA gyrase B subunit, C-terminal YP_2983 IPR003594 Histidine kinase/HSP90-like ATPase YP_2983 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal YP_2983 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YP_2983 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_2983 IPR018522 DNA topoisomerase, type IIA, conserved site YP_2983 IPR001241 DNA topoisomerase, type IIA YP_2983 IPR006171 TOPRIM domain YP_2984 IPR036390 Winged helix DNA-binding domain superfamily YP_2984 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2984 IPR000847 Transcription regulator HTH, LysR YP_2984 IPR005119 LysR, substrate-binding YP_2985 IPR029039 Flavoprotein-like superfamily YP_2985 IPR003680 Flavodoxin-like fold YP_2987 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative YP_2987 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal YP_2987 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta YP_2987 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat YP_2987 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily YP_2987 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YP_2987 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YP_2988 IPR002123 Phospholipid/glycerol acyltransferase YP_2988 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_2989 IPR011707 Multicopper oxidase, type 3 YP_2989 IPR008972 Cupredoxin YP_2989 IPR026589 Cell division protein FtsP YP_2989 IPR006311 Twin-arginine translocation pathway, signal sequence YP_2989 IPR011706 Multicopper oxidase, type 2 YP_2991 IPR018170 Aldo/keto reductase, conserved site YP_2991 IPR020471 Aldo/keto reductase YP_2991 IPR023210 NADP-dependent oxidoreductase domain YP_2991 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_2993 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YP_2993 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YP_2994 IPR009057 Homeobox-like domain superfamily YP_2994 IPR018060 DNA binding HTH domain, AraC-type YP_2994 IPR009594 Transcription regulator HTH, AraC, N-terminal YP_2995 IPR032816 SNARE associated Golgi protein YP_2995 IPR032818 DedA family YP_2996 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_2996 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_2996 IPR015424 Pyridoxal phosphate-dependent transferase YP_2996 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_2996 IPR006233 Cystathionine beta-lyase, bacterial YP_2997 IPR014164 TonB-system energizer ExbB type-1 YP_2997 IPR002898 MotA/TolQ/ExbB proton channel YP_2998 IPR014170 TonB system transport protein ExbD type-1 YP_2998 IPR003400 Biopolymer transport protein ExbD/TolR YP_3005 IPR001482 Type II/IV secretion system protein YP_3005 IPR022399 Helicase/secretion neighbourhood ATPase YP_3005 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3010 IPR002686 Transposase IS200-like YP_3010 IPR036515 Transposase IS200-like superfamily YP_3012 IPR008962 PapD-like superfamily YP_3012 IPR016147 Pili assembly chaperone, N-terminal YP_3012 IPR018046 Pili assembly chaperone, conserved site YP_3012 IPR016148 Pili assembly chaperone, C-terminal YP_3012 IPR013783 Immunoglobulin-like fold YP_3012 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_3012 IPR001829 Pili assembly chaperone, bacterial YP_3013 IPR015303 Fimbrial adhesin F17-AG, lectin domain YP_3013 IPR008966 Adhesion domain superfamily YP_3013 IPR036937 Fimbrial-type adhesion domain superfamily YP_3013 IPR000259 Fimbrial-type adhesion domain YP_3014 IPR002491 ABC transporter periplasmic binding domain YP_3018 IPR006136 Flagellar biosynthetic protein FlhB YP_3018 IPR006135 Type III secretion system substrate exporter YP_3018 IPR029025 Type III secretion system substrate exporter, C-terminal YP_3019 IPR002010 Type III secretion system inner membrane R protein YP_3019 IPR006303 Flagellar biosynthesis protein FliR YP_3020 IPR006305 Flagellar biosynthesis protein FliQ YP_3020 IPR002191 Bacterial export protein family 3 YP_3021 IPR005837 Flagellar transport protein FliP YP_3021 IPR005838 Type III secretion system inner membrane P protein YP_3022 IPR036429 SpoA-like superfamily YP_3022 IPR012826 Flagellar motor switch FliN YP_3022 IPR001543 Surface presentation of antigen (SpoA) YP_3022 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YP_3024 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3024 IPR025944 Sigma-54 interaction domain, conserved site YP_3024 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YP_3024 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YP_3024 IPR002078 RNA polymerase sigma factor 54 interaction domain YP_3024 IPR001789 Signal transduction response regulator, receiver domain YP_3024 IPR002197 DNA binding HTH domain, Fis-type YP_3024 IPR009057 Homeobox-like domain superfamily YP_3024 IPR011006 CheY-like superfamily YP_3024 IPR003593 AAA+ ATPase domain YP_3025 IPR001624 Flagellar hook-basal body complex protein FliE YP_3026 IPR013556 Flagellar M-ring C-terminal YP_3026 IPR006182 Secretory protein YscJ/FliF YP_3026 IPR000067 Flagellar M-ring protein FliF YP_3029 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YP_3029 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YP_3029 IPR032463 ATPase, type III secretion system, FliI YP_3029 IPR003593 AAA+ ATPase domain YP_3029 IPR005714 ATPase, type III secretion system, FliI/YscN YP_3029 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3029 IPR040627 T3SS EscN ATPase, C-terminal YP_3029 IPR020005 Flagellar export ATPase FliI, clade 1 YP_3033 IPR013974 SAF domain YP_3033 IPR039246 Flagellar protein FlgA YP_3033 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YP_3034 IPR006300 Flagellar basal-body rod protein FlgB YP_3034 IPR001444 Flagellar basal body rod protein, N-terminal YP_3034 IPR019776 Flagellar basal body rod protein, conserved site YP_3035 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_3035 IPR006299 Flagellar basal-body rod protein FlgC YP_3035 IPR019776 Flagellar basal body rod protein, conserved site YP_3035 IPR001444 Flagellar basal body rod protein, N-terminal YP_3036 IPR025965 FlgD Ig-like domain YP_3036 IPR005648 Flagellar hook capping protein YP_3036 IPR025963 FlgD Tudor-like domain YP_3037 IPR001444 Flagellar basal body rod protein, N-terminal YP_3037 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YP_3037 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YP_3037 IPR011491 Flagellar hook protein FlgE YP_3037 IPR019776 Flagellar basal body rod protein, conserved site YP_3037 IPR037058 Flagellar hook protein FlgE superfamily YP_3037 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_3038 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YP_3038 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YP_3038 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_3038 IPR001444 Flagellar basal body rod protein, N-terminal YP_3038 IPR019776 Flagellar basal body rod protein, conserved site YP_3039 IPR012834 Flagellar basal-body rod FlgG YP_3039 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YP_3039 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_3039 IPR001444 Flagellar basal body rod protein, N-terminal YP_3039 IPR019776 Flagellar basal body rod protein, conserved site YP_3039 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YP_3040 IPR000527 Flagellar L-ring protein YP_3041 IPR001782 Flagellar P-ring protein YP_3043 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_3043 IPR001444 Flagellar basal body rod protein, N-terminal YP_3043 IPR002371 Flagellar hook-associated protein 1 YP_3047 IPR001867 OmpR/PhoB-type DNA-binding domain YP_3047 IPR040970 CadC C-terminal domain 1 YP_3047 IPR016032 Signal transduction response regulator, C-terminal effector YP_3047 IPR011990 Tetratricopeptide-like helical domain superfamily YP_3047 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3047 IPR039420 Transcriptional regulatory protein WalR-like YP_3049 IPR010810 Flagellin hook, IN motif YP_3049 IPR040026 Flagellar hook-associated protein 2 YP_3049 IPR010809 Flagellar hook-associated protein 2, C-terminal YP_3049 IPR003481 Flagellar hook-associated protein 2, N-terminal YP_3054 IPR007630 RNA polymerase sigma-70 region 4 YP_3054 IPR000943 RNA polymerase sigma-70 YP_3054 IPR014284 RNA polymerase sigma-70 like domain YP_3054 IPR012845 RNA polymerase sigma factor, FliA/WhiG YP_3054 IPR013325 RNA polymerase sigma factor, region 2 YP_3054 IPR007627 RNA polymerase sigma-70 region 2 YP_3054 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_3055 IPR022522 Flagellar motor stator, MotA YP_3055 IPR002898 MotA/TolQ/ExbB proton channel YP_3055 IPR000540 Flagellar motor protein MotA, conserved site YP_3056 IPR036737 OmpA-like domain superfamily YP_3056 IPR025713 Motility protein B, N-terminal domain YP_3056 IPR006665 OmpA-like domain YP_3064 IPR038965 Transposase InsF-like YP_3064 IPR036397 Ribonuclease H superfamily YP_3064 IPR012337 Ribonuclease H-like superfamily YP_3064 IPR001584 Integrase, catalytic core YP_3064 IPR025948 HTH-like domain YP_3069 IPR008514 Type VI secretion system effector, Hcp YP_3069 IPR036624 Hcp1-like superfamily YP_3072 IPR010794 Maltose operon periplasmic YP_3073 IPR023738 Maltoporin YP_3073 IPR003192 Porin, LamB-type YP_3073 IPR036998 Porin, LamB-type superfamily YP_3074 IPR040582 MalK, OB fold domain YP_3074 IPR017871 ABC transporter, conserved site YP_3074 IPR003439 ABC transporter-like YP_3074 IPR015855 ABC transporter, maltose/maltodextrin import, MalK YP_3074 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3074 IPR008995 Molybdate/tungstate binding, C-terminal YP_3074 IPR003593 AAA+ ATPase domain YP_3076 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein YP_3076 IPR006059 Bacterial extracellular solute-binding protein YP_3076 IPR006061 Solute-binding family 1, conserved site YP_3077 IPR035906 MetI-like superfamily YP_3077 IPR030156 Maltose/maltodextrin transport system permease protein MalF-like YP_3077 IPR035277 MalF, N-terminal YP_3077 IPR029345 Maltose transport system permease protein MalF, P2 domain YP_3077 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_3078 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_3078 IPR035906 MetI-like superfamily YP_3079 IPR009315 Phosphate-starvation-induced PsiE YP_3079 IPR020948 Phosphate-starvation-induced PsiE-like YP_3080 IPR023096 Phosphoglucose isomerase, C-terminal YP_3080 IPR001672 Phosphoglucose isomerase (PGI) YP_3080 IPR018189 Phosphoglucose isomerase, conserved site YP_3080 IPR035482 Phosphoglucose isomerase, SIS domain 2 YP_3080 IPR035476 Phosphoglucose isomerase, SIS domain 1 YP_3081 IPR018042 Aspartate kinase, conserved site YP_3081 IPR002912 ACT domain YP_3081 IPR041745 Lysine-sensitive aspartokinase 3, N-terminal catalytic domain YP_3081 IPR001048 Aspartate/glutamate/uridylate kinase YP_3081 IPR005260 Aspartate kinase, monofunctional class YP_3081 IPR001341 Aspartate kinase YP_3081 IPR036393 Acetylglutamate kinase-like superfamily YP_3083 IPR008638 Filamentous haemagglutinin, N-terminal YP_3083 IPR012334 Pectin lyase fold YP_3083 IPR025157 Hemagglutinin repeat YP_3083 IPR011050 Pectin lyase fold/virulence factor YP_3084 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain YP_3084 IPR006158 Cobalamin (vitamin B12)-binding domain YP_3084 IPR011822 Cobalamin-dependent methionine synthase YP_3084 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily YP_3084 IPR033706 Methionine synthase, B12-binding domain YP_3084 IPR000489 Pterin-binding domain YP_3084 IPR003726 Homocysteine-binding domain YP_3084 IPR011005 Dihydropteroate synthase-like YP_3084 IPR036724 Cobalamin-binding domain superfamily YP_3084 IPR036594 Methionine synthase domain YP_3084 IPR004223 Vitamin B12-dependent methionine synthase, activation domain YP_3084 IPR036589 Homocysteine-binding domain superfamily YP_3085 IPR005471 Transcription regulator IclR, N-terminal YP_3085 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3085 IPR014757 Transcription regulator IclR, C-terminal YP_3085 IPR029016 GAF-like domain superfamily YP_3085 IPR036390 Winged helix DNA-binding domain superfamily YP_3086 IPR010452 Isocitrate dehydrogenase kinasephosphatase YP_3087 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YP_3087 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site YP_3087 IPR006254 Isocitrate lyase YP_3087 IPR039556 ICL/PEPM domain YP_3087 IPR040442 Pyruvate kinase-like domain superfamily YP_3088 IPR001465 Malate synthase YP_3088 IPR006252 Malate synthase A YP_3088 IPR011076 Malate synthase-like superfamily YP_3088 IPR019830 Malate synthase, conserved site YP_3089 IPR033752 MetA family YP_3089 IPR005697 Homoserine O-succinyltransferase MetA YP_3089 IPR029062 Class I glutamine amidotransferase-like YP_3091 IPR024051 AICAR transformylase, duplicated domain superfamily YP_3091 IPR002695 Bifunctional purine biosynthesis protein PurH-like YP_3091 IPR036914 Methylglyoxal synthase-like domain superfamily YP_3091 IPR011607 Methylglyoxal synthase-like domain YP_3091 IPR016193 Cytidine deaminase-like YP_3092 IPR013815 ATP-grasp fold, subdomain 1 YP_3092 IPR016185 Pre-ATP-grasp domain superfamily YP_3092 IPR011761 ATP-grasp fold YP_3092 IPR011054 Rudiment single hybrid motif YP_3092 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal YP_3092 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YP_3092 IPR000115 Phosphoribosylglycinamide synthetase YP_3092 IPR020559 Phosphoribosylglycinamide synthetase, conserved site YP_3092 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily YP_3092 IPR020560 Phosphoribosylglycinamide synthetase, C-domain YP_3093 IPR010858 Protein of unknown function DUF1481 YP_3093 IPR016500 Uncharacterised conserved protein UCP006993 YP_3094 IPR020816 Histone-like DNA-binding protein, conserved site YP_3094 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily YP_3094 IPR000119 Histone-like DNA-binding protein YP_3095 IPR007338 Protein of unknown function DUF416 YP_3095 IPR023381 YP001051499.1-like domain superfamily YP_3096 IPR007581 Endonuclease V YP_3097 IPR000257 Uroporphyrinogen decarboxylase (URO-D) YP_3097 IPR006361 Uroporphyrinogen decarboxylase HemE YP_3097 IPR038071 UROD/MetE-like superfamily YP_3099 IPR015376 Zinc ribbon, NADH pyrophosphatase YP_3099 IPR000086 NUDIX hydrolase domain YP_3099 IPR015797 NUDIX hydrolase-like domain superfamily YP_3099 IPR022925 NADH pyrophosphatase NudC YP_3099 IPR020084 NUDIX hydrolase, conserved site YP_3100 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YP_3100 IPR038309 Rsd/AlgQ superfamily YP_3100 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd YP_3102 IPR037509 Phosphomethylpyrimidine synthase YP_3102 IPR025747 ThiC-associated domain YP_3102 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B YP_3102 IPR038521 ThiC/Bza superfamily YP_3103 IPR022998 Thiamine phosphate synthase/TenI YP_3103 IPR034291 Thiamine phosphate synthase YP_3103 IPR036206 Thiamin phosphate synthase superfamily YP_3103 IPR013785 Aldolase-type TIM barrel YP_3104 IPR012731 Thiazole biosynthesis adenylyltransferase ThiF YP_3104 IPR000594 THIF-type NAD/FAD binding fold YP_3104 IPR035985 Ubiquitin-activating enzyme YP_3106 IPR008867 Thiazole synthase YP_3106 IPR033983 Thiazole synthase ThiG YP_3106 IPR013785 Aldolase-type TIM barrel YP_3107 IPR012726 Thiazole biosynthesis ThiH YP_3107 IPR007197 Radical SAM YP_3107 IPR010722 Biotin and thiamin synthesis-associated domain YP_3107 IPR013785 Aldolase-type TIM barrel YP_3107 IPR034428 ThiH/NocL/HydG-like YP_3109 IPR007066 RNA polymerase Rpb1, domain 3 YP_3109 IPR000722 RNA polymerase, alpha subunit YP_3109 IPR006592 RNA polymerase, N-terminal YP_3109 IPR007080 RNA polymerase Rpb1, domain 1 YP_3109 IPR042102 RNA polymerase Rpb1, domain 3 superfamily YP_3109 IPR007083 RNA polymerase Rpb1, domain 4 YP_3109 IPR007081 RNA polymerase Rpb1, domain 5 YP_3109 IPR012754 DNA-directed RNA polymerase, subunit beta-prime YP_3109 IPR038120 RNA polymerase Rpb1, funnel domain superfamily YP_3110 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain YP_3110 IPR015712 DNA-directed RNA polymerase, subunit 2 YP_3110 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily YP_3110 IPR014724 RNA polymerase Rpb2, OB-fold YP_3110 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type YP_3110 IPR007121 RNA polymerase, beta subunit, conserved site YP_3110 IPR007644 RNA polymerase, beta subunit, protrusion YP_3110 IPR007642 RNA polymerase Rpb2, domain 2 YP_3110 IPR037034 RNA polymerase Rpb2, domain 2 superfamily YP_3110 IPR007645 RNA polymerase Rpb2, domain 3 YP_3110 IPR007641 RNA polymerase Rpb2, domain 7 YP_3110 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain YP_3111 IPR008932 Ribosomal protein L7/L12, oligomerisation YP_3111 IPR000206 Ribosomal protein L7/L12 YP_3111 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily YP_3111 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YP_3111 IPR013823 Ribosomal protein L7/L12, C-terminal YP_3112 IPR001790 Ribosomal protein L10P YP_3112 IPR002363 Ribosomal protein L10, eubacterial, conserved site YP_3112 IPR022973 Ribosomal protein L10 YP_3113 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich YP_3113 IPR023673 Ribosomal protein L1, conserved site YP_3113 IPR002143 Ribosomal protein L1 YP_3113 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein YP_3113 IPR023674 Ribosomal protein L1-like YP_3113 IPR005878 Ribosomal protein L1, bacterial-type YP_3114 IPR020785 Ribosomal protein L11, conserved site YP_3114 IPR020783 Ribosomal protein L11, C-terminal YP_3114 IPR000911 Ribosomal protein L11/L12 YP_3114 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily YP_3114 IPR006519 Ribosomal protein L11, bacterial-type YP_3114 IPR020784 Ribosomal protein L11, N-terminal YP_3114 IPR036769 Ribosomal protein L11, C-terminal domain superfamily YP_3115 IPR005824 KOW YP_3115 IPR008991 Translation protein SH3-like domain superfamily YP_3115 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site YP_3115 IPR001062 Transcription antitermination protein, NusG YP_3115 IPR014722 Ribosomal protein L2, domain 2 YP_3115 IPR036735 NusG, N-terminal domain superfamily YP_3115 IPR006645 NusG, N-terminal YP_3116 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit YP_3116 IPR005807 SecE subunit of protein translocation complex, bacterial-like YP_3116 IPR038379 SecE superfamily YP_3117 IPR000795 Transcription factor, GTP-binding domain YP_3117 IPR005225 Small GTP-binding protein domain YP_3117 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YP_3117 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YP_3117 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YP_3117 IPR009000 Translation protein, beta-barrel domain superfamily YP_3117 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3117 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain YP_3117 IPR004161 Translation elongation factor EFTu-like, domain 2 YP_3117 IPR033720 Elongation factor Tu, domain 2 YP_3117 IPR031157 Tr-type G domain, conserved site YP_3119 IPR001584 Integrase, catalytic core YP_3119 IPR012337 Ribonuclease H-like superfamily YP_3119 IPR038965 Transposase InsF-like YP_3119 IPR025948 HTH-like domain YP_3119 IPR036397 Ribonuclease H superfamily YP_3121 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type YP_3121 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site YP_3121 IPR033129 Phosphoenolpyruvate carboxylase, His active site YP_3121 IPR021135 Phosphoenolpyruvate carboxylase YP_3121 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YP_3122 IPR010169 Acetylornithine deacetylase ArgE YP_3122 IPR036264 Bacterial exopeptidase dimerisation domain YP_3122 IPR002933 Peptidase M20 YP_3122 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YP_3122 IPR011650 Peptidase M20, dimerisation domain YP_3123 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YP_3123 IPR000534 Semialdehyde dehydrogenase, NAD-binding YP_3123 IPR036291 NAD(P)-binding domain superfamily YP_3123 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 YP_3123 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site YP_3124 IPR037528 Acetylglutamate kinase ArgB YP_3124 IPR036393 Acetylglutamate kinase-like superfamily YP_3124 IPR041731 N-Acetyl-L-glutamate kinase, noncyclic YP_3124 IPR004662 Acetylglutamate kinase family YP_3124 IPR001048 Aspartate/glutamate/uridylate kinase YP_3125 IPR029419 Argininosuccinate lyase, C-terminal YP_3125 IPR008948 L-Aspartase-like YP_3125 IPR020557 Fumarate lyase, conserved site YP_3125 IPR024083 Fumarase/histidase, N-terminal YP_3125 IPR000362 Fumarate lyase family YP_3125 IPR009049 Argininosuccinate lyase YP_3125 IPR022761 Fumarate lyase, N-terminal YP_3126 IPR011276 TonB-dependent haem/haemoglobin receptor YP_3126 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_3126 IPR039426 Vitamin B12 transporter BtuB-like YP_3126 IPR000531 TonB-dependent receptor-like, beta-barrel YP_3126 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor YP_3126 IPR012910 TonB-dependent receptor, plug domain YP_3126 IPR037066 TonB-dependent receptor, plug domain superfamily YP_3128 IPR010128 ATPase, type I secretion system, PrtD YP_3128 IPR011527 ABC transporter type 1, transmembrane domain YP_3128 IPR036640 ABC transporter type 1, transmembrane domain superfamily YP_3128 IPR003439 ABC transporter-like YP_3128 IPR017871 ABC transporter, conserved site YP_3128 IPR003593 AAA+ ATPase domain YP_3128 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3129 IPR010129 Type I secretion membrane fusion protein, HlyD family YP_3129 IPR006144 Secretion protein HlyD, conserved site YP_3130 IPR037682 TonB, C-terminal YP_3130 IPR006260 TonB/TolA, C-terminal YP_3131 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YP_3131 IPR006258 Dihydrolipoamide dehydrogenase YP_3131 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YP_3131 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YP_3131 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3131 IPR023753 FAD/NAD(P)-binding domain YP_3131 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_3132 IPR011767 Glutaredoxin active site YP_3132 IPR036249 Thioredoxin-like superfamily YP_3132 IPR013740 Redoxin YP_3132 IPR037944 Peroxiredoxin-5-like YP_3132 IPR014025 Glutaredoxin subgroup YP_3132 IPR011906 Glutaredoxin domain YP_3132 IPR002109 Glutaredoxin YP_3133 IPR036390 Winged helix DNA-binding domain superfamily YP_3133 IPR000847 Transcription regulator HTH, LysR YP_3133 IPR005119 LysR, substrate-binding YP_3133 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3134 IPR022962 Soluble pyridine nucleotide transhydrogenase YP_3134 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YP_3134 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3134 IPR023753 FAD/NAD(P)-binding domain YP_3134 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YP_3134 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_3135 IPR009057 Homeobox-like domain superfamily YP_3135 IPR001647 DNA-binding HTH domain, TetR-type YP_3135 IPR023764 Transcriptional repressor HTH, FabR YP_3136 IPR009867 Protein of unknown function DUF1422 YP_3137 IPR010280 (Uracil-5)-methyltransferase family YP_3137 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3137 IPR030391 RNA methyltransferase TrmA, conserved site YP_3137 IPR030390 RNA methyltransferase TrmA, active site YP_3137 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA YP_3138 IPR037066 TonB-dependent receptor, plug domain superfamily YP_3138 IPR000531 TonB-dependent receptor-like, beta-barrel YP_3138 IPR012910 TonB-dependent receptor, plug domain YP_3138 IPR010101 TonB-dependent vitamin B12 transporter BtuB YP_3138 IPR039426 Vitamin B12 transporter BtuB-like YP_3138 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_3138 IPR010917 TonB-dependent receptor, conserved site YP_3139 IPR004391 Glutamate racemase YP_3139 IPR015942 Asp/Glu/hydantoin racemase YP_3139 IPR001920 Asp/Glu racemase YP_3139 IPR033134 Asp/Glu racemase, active site 2 YP_3139 IPR018187 Asp/Glu racemase, active site 1 YP_3140 IPR025997 Periplasmic binding protein YP_3140 IPR028082 Periplasmic binding protein-like I YP_3140 IPR033893 ABC transporter periplasmic-binding protein YtfQ YP_3141 IPR003593 AAA+ ATPase domain YP_3141 IPR003439 ABC transporter-like YP_3141 IPR017871 ABC transporter, conserved site YP_3141 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3142 IPR001851 ABC transporter, permease YP_3143 IPR001851 ABC transporter, permease YP_3144 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3144 IPR036390 Winged helix DNA-binding domain superfamily YP_3144 IPR005119 LysR, substrate-binding YP_3144 IPR000847 Transcription regulator HTH, LysR YP_3144 IPR020890 Transcription regulator HTH, HdfR YP_3145 IPR007335 Protein of unknown function DUF413 YP_3146 IPR000523 Magnesium chelatase ChlI domain YP_3146 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3146 IPR003593 AAA+ ATPase domain YP_3146 IPR025158 Mg chelatase-related protein, C-terminal domain YP_3146 IPR020568 Ribosomal protein S5 domain 2-type fold YP_3146 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YP_3146 IPR004482 Mg chelatase-related protein YP_3147 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YP_3147 IPR000399 TPP-binding enzyme, conserved site YP_3147 IPR039368 Acetolactate synthase large subunit, TPP binding domain YP_3147 IPR012000 Thiamine pyrophosphate enzyme, central domain YP_3147 IPR029061 Thiamin diphosphate-binding fold YP_3147 IPR029035 DHS-like NAD/FAD-binding domain superfamily YP_3147 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_3147 IPR012846 Acetolactate synthase, large subunit, biosynthetic YP_3148 IPR002912 ACT domain YP_3149 IPR033939 Branched-chain aminotransferase YP_3149 IPR005785 Branched-chain amino acid aminotransferase I YP_3149 IPR036038 Aminotransferase-like, PLP-dependent enzymes YP_3149 IPR018300 Aminotransferase, class IV, conserved site YP_3149 IPR001544 Aminotransferase class IV YP_3150 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site YP_3150 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase YP_3150 IPR037237 IlvD/EDD, N-terminal domain YP_3150 IPR004404 Dihydroxy-acid dehydratase YP_3150 IPR042096 Dihydroxy-acid dehydratase, C-terminal YP_3151 IPR001721 Threonine dehydratase, ACT-like domain YP_3151 IPR038110 Threonine dehydratase, ACT-like domain superfamily YP_3151 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YP_3151 IPR005787 Threonine dehydratase, biosynthetic YP_3151 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_3151 IPR001926 Pyridoxal-phosphate dependent enzyme YP_3157 IPR000847 Transcription regulator HTH, LysR YP_3157 IPR036390 Winged helix DNA-binding domain superfamily YP_3157 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3157 IPR037404 HTH-type transcriptional activator IlvY, PBP2 domain YP_3157 IPR005119 LysR, substrate-binding YP_3158 IPR013116 Ketol-acid reductoisomerase, N-terminal YP_3158 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YP_3158 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YP_3158 IPR013023 Ketol-acid reductoisomerase YP_3158 IPR036291 NAD(P)-binding domain superfamily YP_3158 IPR000506 Ketol-acid reductoisomerase, C-terminal YP_3163 IPR000290 Colicin immunity protein/pyocin immunity protein YP_3163 IPR035900 Colicin E immunity protein superfamily YP_3165 IPR013783 Immunoglobulin-like fold YP_3165 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_3165 IPR001829 Pili assembly chaperone, bacterial YP_3165 IPR008962 PapD-like superfamily YP_3165 IPR016147 Pili assembly chaperone, N-terminal YP_3165 IPR016148 Pili assembly chaperone, C-terminal YP_3165 IPR018046 Pili assembly chaperone, conserved site YP_3167 IPR025885 PapC, N-terminal domain YP_3167 IPR025949 PapC-like, C-terminal domain YP_3167 IPR042186 Outer membrane usher protein FimD, plug domain YP_3167 IPR018030 Fimbrial membrane usher, conserved site YP_3167 IPR000015 Outer membrane usher protein YP_3167 IPR037224 PapC, N-terminal domain superfamily YP_3168 IPR016147 Pili assembly chaperone, N-terminal YP_3168 IPR013783 Immunoglobulin-like fold YP_3168 IPR008962 PapD-like superfamily YP_3168 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_3168 IPR001829 Pili assembly chaperone, bacterial YP_3168 IPR016148 Pili assembly chaperone, C-terminal YP_3168 IPR018046 Pili assembly chaperone, conserved site YP_3172 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site YP_3172 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YP_3173 IPR014016 UvrD-like helicase, ATP-binding domain YP_3173 IPR013986 DExx box DNA helicase domain superfamily YP_3173 IPR034739 UvrD/AddA helicase, N-terminal YP_3173 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3173 IPR005752 ATP-dependent DNA helicase Rep YP_3173 IPR000212 DNA helicase, UvrD/REP type YP_3173 IPR014017 UvrD-like DNA helicase, C-terminal YP_3175 IPR003695 Ppx/GppA phosphatase YP_3175 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase YP_3175 IPR022371 Exopolyphosphatase YP_3175 IPR030673 Pyrophosphatase, GppA/Ppx-type YP_3176 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YP_3176 IPR011545 DEAD/DEAH box helicase domain YP_3176 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_3176 IPR014014 RNA helicase, DEAD-box type, Q motif YP_3176 IPR023554 ATP-dependent RNA helicase RhlB type YP_3176 IPR001650 Helicase, C-terminal YP_3176 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3177 IPR013766 Thioredoxin domain YP_3177 IPR017937 Thioredoxin, conserved site YP_3177 IPR036249 Thioredoxin-like superfamily YP_3177 IPR005746 Thioredoxin YP_3178 IPR003593 AAA+ ATPase domain YP_3178 IPR012340 Nucleic acid-binding, OB-fold YP_3178 IPR011112 Rho termination factor, N-terminal YP_3178 IPR011113 Rho termination factor, RNA-binding domain YP_3178 IPR036269 Rho termination factor, N-terminal domain superfamily YP_3178 IPR041703 Transcription termination factor Rho, ATP binding domain YP_3178 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YP_3178 IPR011129 Cold shock domain YP_3178 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3178 IPR004665 Transcription termination factor Rho YP_3179 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_3179 IPR000715 Glycosyl transferase, family 4 YP_3180 IPR032895 ECA polysaccharide chain length modulation protein WzzE YP_3180 IPR003856 Polysaccharide chain length determinant N-terminal domain YP_3181 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like YP_3181 IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB YP_3181 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain YP_3182 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation YP_3182 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily YP_3182 IPR036291 NAD(P)-binding domain superfamily YP_3182 IPR032891 UDP-N-acetyl-D-mannosamine dehydrogenase WecC YP_3182 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_3182 IPR017476 UDP-glucose/GDP-mannose dehydrogenase YP_3182 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal YP_3182 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase YP_3182 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YP_3183 IPR005888 dTDP-glucose 4,6-dehydratase YP_3183 IPR016040 NAD(P)-binding domain YP_3183 IPR036291 NAD(P)-binding domain superfamily YP_3184 IPR005835 Nucleotidyl transferase domain YP_3184 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form YP_3184 IPR029044 Nucleotide-diphospho-sugar transferases YP_3185 IPR020683 Ankyrin repeat-containing domain YP_3185 IPR012752 dTDP-fucosamine acetyltransferase WecD YP_3185 IPR002110 Ankyrin repeat YP_3185 IPR016181 Acyl-CoA N-acyltransferase YP_3185 IPR000182 GNAT domain YP_3186 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE YP_3186 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like YP_3186 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_3186 IPR015424 Pyridoxal phosphate-dependent transferase YP_3186 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YP_3186 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_3187 IPR032896 Lipid III flippase WzxE YP_3187 IPR002797 Polysaccharide biosynthesis protein YP_3188 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase YP_3189 IPR010691 Probable ECA polymerase WzyE YP_3190 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase YP_3190 IPR004629 Glycosyl transferase WecB/TagA/CpsF YP_3191 IPR004841 Amino acid permease/ SLC12A domain YP_3191 IPR004840 Amino acid permease, conserved site YP_3193 IPR002686 Transposase IS200-like YP_3193 IPR036515 Transposase IS200-like superfamily YP_3194 IPR013105 Tetratricopeptide repeat 2 YP_3194 IPR013026 Tetratricopeptide repeat-containing domain YP_3194 IPR010817 HemY, N-terminal YP_3194 IPR005254 Heme biosynthesis-associated TPR protein YP_3194 IPR019734 Tetratricopeptide repeat YP_3194 IPR011990 Tetratricopeptide-like helical domain superfamily YP_3195 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX YP_3196 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily YP_3196 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase YP_3196 IPR039793 Uroporphyrinogen-III synthase YP_3197 IPR022417 Porphobilinogen deaminase, N-terminal YP_3197 IPR022418 Porphobilinogen deaminase, C-terminal YP_3197 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily YP_3197 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site YP_3197 IPR000860 Porphobilinogen deaminase YP_3199 IPR024686 Adenylate cyclase class-I, conserved site YP_3199 IPR024685 Adenylate cyclase class-I, N-terminal domain YP_3199 IPR000274 Adenylate cyclase, class-I YP_3200 IPR002908 Frataxin/CyaY YP_3200 IPR036524 Frataxin/CyaY superfamily YP_3200 IPR020895 Frataxin conserved site YP_3201 IPR032831 Prokaryotic lipoprotein-attachment site YP_3202 IPR001653 Diaminopimelate epimerase, DapF YP_3202 IPR018510 Diaminopimelate epimerase, active site YP_3203 IPR029016 GAF-like domain superfamily YP_3203 IPR007435 Protein of unknown function DUF484 YP_3204 IPR011010 DNA breaking-rejoining enzyme, catalytic core YP_3204 IPR013762 Integrase-like, catalytic domain superfamily YP_3204 IPR002104 Integrase, catalytic domain YP_3204 IPR010998 Integrase/recombinase, N-terminal YP_3204 IPR004107 Integrase, SAM-like, N-terminal YP_3204 IPR011931 Tyrosine recombinase XerC YP_3204 IPR023009 Tyrosine recombinase XerC/XerD YP_3205 IPR023214 HAD superfamily YP_3205 IPR006439 HAD hydrolase, subfamily IA YP_3205 IPR036412 HAD-like superfamily YP_3205 IPR041492 Haloacid dehalogenase-like hydrolase YP_3206 IPR014016 UvrD-like helicase, ATP-binding domain YP_3206 IPR013986 DExx box DNA helicase domain superfamily YP_3206 IPR034739 UvrD/AddA helicase, N-terminal YP_3206 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3206 IPR000212 DNA helicase, UvrD/REP type YP_3206 IPR005753 DNA helicase, ATP-dependent, UvrD type YP_3206 IPR014017 UvrD-like DNA helicase, C-terminal YP_3209 IPR008322 Uncharacterised protein family UPF0261 YP_3210 IPR013785 Aldolase-type TIM barrel YP_3210 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YP_3210 IPR009215 TIM-barrel domain, IGPS-like YP_3211 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB YP_3211 IPR004488 Magnesium/cobalt transport protein CorA YP_3212 IPR000620 EamA domain YP_3212 IPR004626 RarD protein YP_3213 IPR029069 HotDog domain superfamily YP_3213 IPR006683 Thioesterase domain YP_3213 IPR003736 Phenylacetic acid degradation-related domain YP_3214 IPR036541 Phospholipase A1 superfamily YP_3214 IPR003187 Phospholipase A1 YP_3215 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial YP_3215 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3215 IPR004589 DNA helicase, ATP-dependent, RecQ type YP_3215 IPR018982 RQC domain YP_3215 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3215 IPR002121 HRDC domain YP_3215 IPR011545 DEAD/DEAH box helicase domain YP_3215 IPR001650 Helicase, C-terminal YP_3215 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain YP_3215 IPR010997 HRDC-like superfamily YP_3215 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_3216 IPR001123 Amino acid exporter protein, LeuE-type YP_3216 IPR004778 Homoserine/Threonine efflux protein YP_3217 IPR001123 Amino acid exporter protein, LeuE-type YP_3217 IPR004778 Homoserine/Threonine efflux protein YP_3218 IPR029058 Alpha/Beta hydrolase fold YP_3218 IPR022742 Serine aminopeptidase, S33 YP_3219 IPR023214 HAD superfamily YP_3219 IPR036412 HAD-like superfamily YP_3219 IPR006379 HAD-superfamily hydrolase, subfamily IIB YP_3219 IPR000150 Cof family YP_3221 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YP_3221 IPR030395 Glycerophosphodiester phosphodiesterase domain YP_3222 IPR006076 FAD dependent oxidoreductase YP_3222 IPR007419 BFD-like [2Fe-2S]-binding domain YP_3222 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily YP_3222 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3222 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase YP_3222 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit YP_3223 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YP_3223 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3223 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit YP_3224 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_3224 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit YP_3224 IPR009051 Alpha-helical ferredoxin YP_3224 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_3224 IPR004017 Cysteine-rich domain YP_3225 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YP_3225 IPR014894 Protein DcrB YP_3226 IPR003744 Queuosine precursor transporter YP_3227 IPR036868 TusA-like domain superfamily YP_3227 IPR001455 TusA-like domain YP_3227 IPR022931 Sulfur carrier protein TusA YP_3228 IPR006121 Heavy metal-associated domain, HMA YP_3228 IPR036412 HAD-like superfamily YP_3228 IPR023214 HAD superfamily YP_3228 IPR017969 Heavy-metal-associated, conserved site YP_3228 IPR018303 P-type ATPase, phosphorylation site YP_3228 IPR027256 P-type ATPase, subfamily IB YP_3228 IPR008250 P-type ATPase, A domain superfamily YP_3228 IPR001757 P-type ATPase YP_3228 IPR023299 P-type ATPase, cytoplasmic domain N YP_3228 IPR036163 Heavy metal-associated domain superfamily YP_3228 IPR023298 P-type ATPase, transmembrane domain superfamily YP_3229 IPR012506 YhhN-like YP_3232 IPR009525 Protein of unknown function DUF1145 YP_3233 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3233 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YP_3233 IPR004398 RNA methyltransferase, RsmD YP_3235 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily YP_3235 IPR004390 Signal-recognition particle receptor FtsY YP_3235 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily YP_3235 IPR003593 AAA+ ATPase domain YP_3235 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3235 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YP_3235 IPR013822 Signal recognition particle SRP54, helical bundle YP_3235 IPR036225 SRP/SRP receptor, N-terminal YP_3235 IPR013822 Signal recognition particle SRP54, helical bundle YP_3235 IPR003593 AAA+ ATPase domain YP_3235 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YP_3235 IPR036225 SRP/SRP receptor, N-terminal YP_3235 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3235 IPR004390 Signal-recognition particle receptor FtsY YP_3236 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3236 IPR017871 ABC transporter, conserved site YP_3236 IPR003439 ABC transporter-like YP_3236 IPR003593 AAA+ ATPase domain YP_3236 IPR005286 Cell division protein FtsE, ATP-binding YP_3237 IPR004513 Cell division protein FtsX YP_3237 IPR040690 FtsX, extracellular domain YP_3237 IPR003838 ABC transporter permease protein domain YP_3238 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria YP_3238 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_3238 IPR013325 RNA polymerase sigma factor, region 2 YP_3238 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3238 IPR009042 RNA polymerase sigma-70 region 1.2 YP_3238 IPR014284 RNA polymerase sigma-70 like domain YP_3238 IPR000943 RNA polymerase sigma-70 YP_3238 IPR007627 RNA polymerase sigma-70 region 2 YP_3238 IPR007630 RNA polymerase sigma-70 region 4 YP_3239 IPR036515 Transposase IS200-like superfamily YP_3239 IPR002686 Transposase IS200-like YP_3240 IPR032900 PanD regulatory factor PanZ YP_3240 IPR000182 GNAT domain YP_3240 IPR016181 Acyl-CoA N-acyltransferase YP_3240 IPR040448 PanZ, acetyltransferase (GNAT) domain YP_3241 IPR000709 Leu/Ile/Val-binding protein YP_3241 IPR028082 Periplasmic binding protein-like I YP_3241 IPR028081 Leucine-binding protein domain YP_3242 IPR001851 ABC transporter, permease YP_3243 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal YP_3243 IPR001851 ABC transporter, permease YP_3244 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal YP_3244 IPR017871 ABC transporter, conserved site YP_3244 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3244 IPR003593 AAA+ ATPase domain YP_3244 IPR003439 ABC transporter-like YP_3245 IPR017871 ABC transporter, conserved site YP_3245 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein YP_3245 IPR003593 AAA+ ATPase domain YP_3245 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3245 IPR003439 ABC transporter-like YP_3253 IPR006059 Bacterial extracellular solute-binding protein YP_3253 IPR006061 Solute-binding family 1, conserved site YP_3254 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_3254 IPR035906 MetI-like superfamily YP_3255 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_3255 IPR035906 MetI-like superfamily YP_3255 IPR030165 sn-Glycerol-3-phosphate transport system permease protein UgpE YP_3256 IPR008995 Molybdate/tungstate binding, C-terminal YP_3256 IPR040582 MalK, OB fold domain YP_3256 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3256 IPR017922 sn-Glycerol-3-phosphate import ATP-binding protein UgpC YP_3256 IPR003439 ABC transporter-like YP_3256 IPR003593 AAA+ ATPase domain YP_3256 IPR017871 ABC transporter, conserved site YP_3257 IPR030395 Glycerophosphodiester phosphodiesterase domain YP_3257 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YP_3258 IPR004776 Membrane transport protein YP_3259 IPR000620 EamA domain YP_3259 IPR004779 Carboxylate/Amino Acid/Amine Transporter YP_3260 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3260 IPR000847 Transcription regulator HTH, LysR YP_3260 IPR037406 HTH-type transcriptional regulator MetR, PBP2 domain YP_3260 IPR036390 Winged helix DNA-binding domain superfamily YP_3260 IPR005119 LysR, substrate-binding YP_3261 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal YP_3261 IPR006276 Cobalamin-independent methionine synthase YP_3261 IPR038071 UROD/MetE-like superfamily YP_3261 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal YP_3262 IPR029058 Alpha/Beta hydrolase fold YP_3262 IPR002925 Dienelactone hydrolase YP_3263 IPR018016 Nucleoside phosphorylase, conserved site YP_3263 IPR035994 Nucleoside phosphorylase superfamily YP_3263 IPR000845 Nucleoside phosphorylase domain YP_3263 IPR010058 Uridine phosphorylase YP_3265 IPR003706 CstA, N-terminal domain YP_3265 IPR025299 CstA, C-terminal domain YP_3266 IPR032816 SNARE associated Golgi protein YP_3266 IPR032818 DedA family YP_3267 IPR003798 DNA recombination RmuC YP_3268 IPR023576 UbiE/COQ5 methyltransferase, conserved site YP_3268 IPR004033 UbiE/COQ5 methyltransferase YP_3268 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3269 IPR036527 SCP2 sterol-binding domain superfamily YP_3269 IPR038989 Ubiquinone biosynthesis protein UbiJ YP_3269 IPR003033 SCP2 sterol-binding domain YP_3270 IPR004147 UbiB domain YP_3270 IPR010232 Probable protein kinase UbiB YP_3270 IPR011009 Protein kinase-like domain superfamily YP_3271 IPR006312 Sec-independent protein translocase protein TatA/E YP_3271 IPR003369 Sec-independent protein translocase protein TatA/B/E YP_3272 IPR018448 Twin-arginine translocation protein TatB YP_3273 IPR002033 Sec-independent periplasmic protein translocase TatC YP_3273 IPR019820 Sec-independent periplasmic protein translocase, conserved site YP_3275 IPR001584 Integrase, catalytic core YP_3275 IPR006120 Resolvase, HTH domain YP_3275 IPR036397 Ribonuclease H superfamily YP_3275 IPR012337 Ribonuclease H-like superfamily YP_3275 IPR017894 HTH domain, IS21 transposase-type YP_3276 IPR003593 AAA+ ATPase domain YP_3276 IPR001270 ClpA/B family YP_3276 IPR002611 IstB-like ATP-binding protein YP_3276 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_3276 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3277 IPR001731 Delta-aminolevulinic acid dehydratase YP_3277 IPR030656 Delta-aminolevulinic acid dehydratase, active site YP_3277 IPR013785 Aldolase-type TIM barrel YP_3278 IPR036735 NusG, N-terminal domain superfamily YP_3278 IPR006645 NusG, N-terminal YP_3278 IPR010215 Transcription antitermination protein RfaH YP_3279 IPR023677 UbiD decarboxylyase, bacteria YP_3279 IPR002830 UbiD decarboxylyase family YP_3280 IPR017938 Riboflavin synthase-like beta-barrel YP_3280 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YP_3280 IPR017927 FAD-binding domain, ferredoxin reductase-type YP_3280 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_3280 IPR001433 Oxidoreductase FAD/NAD(P)-binding YP_3281 IPR020617 Thiolase, C-terminal YP_3281 IPR012805 Acetyl-CoA C-acyltransferase FadA YP_3281 IPR002155 Thiolase YP_3281 IPR016039 Thiolase-like YP_3281 IPR020615 Thiolase, acyl-enzyme intermediate active site YP_3281 IPR020610 Thiolase, active site YP_3281 IPR020613 Thiolase, conserved site YP_3281 IPR020616 Thiolase, N-terminal YP_3282 IPR012799 Fatty oxidation complex, alpha subunit FadB YP_3282 IPR001753 Enoyl-CoA hydratase/isomerase YP_3282 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding YP_3282 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YP_3282 IPR029045 ClpP/crotonase-like domain superfamily YP_3282 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YP_3282 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_3282 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site YP_3282 IPR036291 NAD(P)-binding domain superfamily YP_3283 IPR036005 Creatinase/aminopeptidase-like YP_3283 IPR022846 Xaa-Pro dipeptidase YP_3283 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YP_3283 IPR000994 Peptidase M24 YP_3283 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YP_3284 IPR035647 EF-G domain III/V-like YP_3284 IPR015796 Impact family, bacterial/archaeal YP_3284 IPR001498 Impact, N-terminal YP_3284 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal YP_3284 IPR020568 Ribosomal protein S5 domain 2-type fold YP_3284 IPR036956 Impact, N-terminal domain superfamily YP_3284 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site YP_3284 IPR023582 Impact family YP_3285 IPR003445 Cation transporter YP_3285 IPR004772 TrkH potassium transport family YP_3286 IPR029039 Flavoprotein-like superfamily YP_3286 IPR001226 Flavodoxin, conserved site YP_3286 IPR026816 Flavodoxin domain YP_3286 IPR008254 Flavodoxin/nitric oxide synthase YP_3288 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal YP_3288 IPR016166 FAD-binding domain, PCMH-type YP_3288 IPR036318 FAD-binding, type PCMH-like superfamily YP_3288 IPR016167 FAD-binding, type PCMH, subdomain 1 YP_3288 IPR016169 FAD-binding, type PCMH, subdomain 2 YP_3288 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase YP_3288 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily YP_3288 IPR006094 FAD linked oxidase, N-terminal YP_3289 IPR036390 Winged helix DNA-binding domain superfamily YP_3289 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3289 IPR008988 Transcriptional repressor, C-terminal YP_3289 IPR030855 Bifunctional ligase/repressor BirA YP_3289 IPR004408 Biotin--acetyl-CoA-carboxylase ligase YP_3289 IPR013196 Helix-turn-helix, type 11 YP_3289 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain YP_3289 IPR003142 Biotin protein ligase, C-terminal YP_3289 IPR004409 Biotin operon repressor, helix-turn-helix domain YP_3290 IPR004566 Pantothenate kinase YP_3290 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3290 IPR006083 Phosphoribulokinase/uridine kinase YP_3291 IPR016181 Acyl-CoA N-acyltransferase YP_3291 IPR000182 GNAT domain YP_3293 IPR001584 Integrase, catalytic core YP_3293 IPR006120 Resolvase, HTH domain YP_3293 IPR017894 HTH domain, IS21 transposase-type YP_3293 IPR036397 Ribonuclease H superfamily YP_3293 IPR012337 Ribonuclease H-like superfamily YP_3294 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3294 IPR002611 IstB-like ATP-binding protein YP_3294 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_3294 IPR003593 AAA+ ATPase domain YP_3294 IPR001270 ClpA/B family YP_3299 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily YP_3299 IPR031656 Alpha-glycerophosphate oxidase, C-terminal YP_3299 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3299 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase YP_3299 IPR006076 FAD dependent oxidoreductase YP_3300 IPR000811 Glycosyl transferase, family 35 YP_3300 IPR011833 Glycogen/starch/alpha-glucan phosphorylase YP_3300 IPR035090 Phosphorylase pyridoxal-phosphate attachment site YP_3301 IPR001296 Glycosyl transferase, family 1 YP_3301 IPR011835 Bacterial/plant glycogen synthase YP_3301 IPR013534 Starch synthase, catalytic domain YP_3302 IPR011004 Trimeric LpxA-like superfamily YP_3302 IPR029044 Nucleotide-diphospho-sugar transferases YP_3302 IPR005835 Nucleotidyl transferase domain YP_3302 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial YP_3302 IPR011831 Glucose-1-phosphate adenylyltransferase YP_3302 IPR005836 ADP-glucose pyrophosphorylase, conserved site YP_3303 IPR013780 Glycosyl hydrolase, all-beta YP_3303 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YP_3303 IPR014756 Immunoglobulin E-set YP_3303 IPR013783 Immunoglobulin-like fold YP_3303 IPR040784 Glycogen debranching enzyme, C-terminal domain YP_3303 IPR004193 Glycoside hydrolase, family 13, N-terminal YP_3303 IPR017853 Glycoside hydrolase superfamily YP_3303 IPR011837 Glycogen debranching enzyme, GlgX type YP_3303 IPR022844 Glycogen debranching enzyme, bacterial YP_3304 IPR017853 Glycoside hydrolase superfamily YP_3304 IPR013780 Glycosyl hydrolase, all-beta YP_3304 IPR004193 Glycoside hydrolase, family 13, N-terminal YP_3304 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YP_3304 IPR014756 Immunoglobulin E-set YP_3304 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB YP_3304 IPR037439 1,4-alpha-glucan-branching enzyme YP_3304 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta YP_3304 IPR013783 Immunoglobulin-like fold YP_3305 IPR003018 GAF domain YP_3305 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3305 IPR010559 Signal transduction histidine kinase, internal region YP_3305 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region YP_3306 IPR003535 Intimin/invasin bacterial adhesion mediator protein YP_3306 IPR013783 Immunoglobulin-like fold YP_3306 IPR038177 Inverse autotransporter, beta-domain superfamily YP_3306 IPR024519 Inverse autotransporter, beta-domain YP_3306 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 IPR016186 C-type lectin-like/link domain superfamily YP_3306 IPR013117 Intimin, C-terminal YP_3306 IPR016187 C-type lectin fold YP_3306 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 IPR015217 Invasin, domain 3 YP_3311 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YP_3311 IPR000534 Semialdehyde dehydrogenase, NAD-binding YP_3311 IPR036291 NAD(P)-binding domain superfamily YP_3311 IPR012080 Aspartate-semialdehyde dehydrogenase YP_3311 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type YP_3311 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site YP_3312 IPR002771 Multiple antibiotic resistance (MarC)-related YP_3315 IPR006001 Carbohydrate kinase, thermoresistant glucokinase YP_3315 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3315 IPR031322 Shikimate kinase/gluconokinase YP_3316 IPR003474 Gluconate transporter YP_3317 IPR000843 LacI-type HTH domain YP_3317 IPR001761 Periplasmic binding protein/LacI sugar binding domain YP_3317 IPR028082 Periplasmic binding protein-like I YP_3317 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_3318 IPR012093 Pirin YP_3318 IPR003829 Pirin, N-terminal domain YP_3318 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain YP_3318 IPR014710 RmlC-like jelly roll fold YP_3318 IPR011051 RmlC-like cupin domain superfamily YP_3321 IPR016032 Signal transduction response regulator, C-terminal effector YP_3321 IPR001789 Signal transduction response regulator, receiver domain YP_3321 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3321 IPR001867 OmpR/PhoB-type DNA-binding domain YP_3321 IPR011006 CheY-like superfamily YP_3321 IPR039420 Transcriptional regulatory protein WalR-like YP_3323 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 YP_3323 IPR000771 Fructose-bisphosphate aldolase, class-II YP_3323 IPR013785 Aldolase-type TIM barrel YP_3325 IPR025997 Periplasmic binding protein YP_3325 IPR028082 Periplasmic binding protein-like I YP_3326 IPR001851 ABC transporter, permease YP_3327 IPR003439 ABC transporter-like YP_3327 IPR015861 ABC transporter, ribose import, RbsA YP_3327 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3327 IPR017871 ABC transporter, conserved site YP_3327 IPR003593 AAA+ ATPase domain YP_3328 IPR000014 PAS domain YP_3328 IPR005467 Histidine kinase domain YP_3328 IPR003594 Histidine kinase/HSP90-like ATPase YP_3328 IPR035965 PAS domain superfamily YP_3328 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3328 IPR001789 Signal transduction response regulator, receiver domain YP_3328 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_3328 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_3328 IPR013656 PAS fold-4 YP_3328 IPR011006 CheY-like superfamily YP_3328 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_3329 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like YP_3329 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3329 IPR023166 HI0933-like insert domain superfamily YP_3330 IPR001204 Phosphate transporter YP_3331 IPR002686 Transposase IS200-like YP_3331 IPR036515 Transposase IS200-like superfamily YP_3332 IPR019598 Universal stress protein B YP_3333 IPR006016 UspA YP_3333 IPR006015 Universal stress protein A family YP_3333 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_3334 IPR036291 NAD(P)-binding domain superfamily YP_3334 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase YP_3334 IPR033524 Leu/Phe/Val dehydrogenases active site YP_3334 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YP_3334 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain YP_3334 IPR014362 Glutamate dehydrogenase YP_3334 IPR033922 NAD(P) binding domain of glutamate dehydrogenase YP_3335 IPR011049 Serralysin-like metalloprotease, C-terminal YP_3335 IPR006026 Peptidase, metallopeptidase YP_3335 IPR034033 Serralysin-like metallopeptidase domain YP_3335 IPR013858 Peptidase M10 serralysin, C-terminal YP_3335 IPR016294 Peptidase M10B YP_3335 IPR001818 Peptidase M10, metallopeptidase YP_3335 IPR018511 Hemolysin-type calcium-binding conserved site YP_3335 IPR024079 Metallopeptidase, catalytic domain superfamily YP_3335 IPR001343 RTX calcium-binding nonapeptide repeat YP_3336 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3336 IPR007536 Ribosomal RNA small subunit methyltransferase J YP_3337 IPR001567 Peptidase M3A/M3B catalytic domain YP_3337 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 YP_3339 IPR007473 Ribosomal RNA large subunit methyltransferase J YP_3339 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3339 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YP_3340 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_3340 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3340 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YP_3340 IPR006322 Glutathione reductase, eukaryote/bacterial YP_3340 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YP_3340 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YP_3340 IPR023753 FAD/NAD(P)-binding domain YP_3341 IPR025736 PucR C-terminal helix-turn-helix domain YP_3341 IPR008599 Putative sugar diacid recognition YP_3341 IPR041522 CdaR, GGDEF-like domain YP_3341 IPR042070 PucR C-terminal helix-turn-helix domain superfamily YP_3342 IPR003474 Gluconate transporter YP_3343 IPR036129 Glycerate kinase superfamily YP_3343 IPR018197 Glycerate kinase, restriction-enzyme-like fold YP_3343 IPR004381 Glycerate kinase YP_3343 IPR018193 Glycerate kinase, flavodoxin-like fold YP_3348 IPR017039 Virulence factor BrkB YP_3348 IPR005274 Inner membrane protein YhjD YP_3349 IPR003763 CDP-diacylglycerol pyrophosphatase YP_3349 IPR036265 HIT-like superfamily YP_3349 IPR038433 CDP-diacylglycerol pyrophosphatase superfamily YP_3350 IPR007844 AsmA YP_3351 IPR001633 EAL domain YP_3351 IPR035919 EAL domain superfamily YP_3352 IPR004370 4-oxalocrotonate tautomerase YP_3352 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type YP_3352 IPR014347 Tautomerase/MIF superfamily YP_3353 IPR011611 Carbohydrate kinase PfkB YP_3353 IPR029056 Ribokinase-like YP_3353 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YP_3354 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YP_3354 IPR011765 Peptidase M16, N-terminal YP_3354 IPR007863 Peptidase M16, C-terminal YP_3355 IPR036458 Sodium:dicarboxylate symporter superfamily YP_3355 IPR001991 Sodium:dicarboxylate symporter YP_3355 IPR023954 C4-dicarboxylate transport protein YP_3355 IPR018107 Sodium:dicarboxylate symporter, conserved site YP_3357 IPR010702 Periplasmic pectate lyase YP_3358 IPR009331 Oligogalacturonate-specific porin YP_3359 IPR029787 Nucleotide cyclase YP_3359 IPR003660 HAMP domain YP_3359 IPR033419 Gammaproteobacterial periplasmic sensor domain GAPES3 YP_3359 IPR000160 GGDEF domain YP_3359 IPR001633 EAL domain YP_3359 IPR035919 EAL domain superfamily YP_3361 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3361 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YP_3361 IPR017871 ABC transporter, conserved site YP_3361 IPR003439 ABC transporter-like YP_3361 IPR003593 AAA+ ATPase domain YP_3362 IPR003593 AAA+ ATPase domain YP_3362 IPR003439 ABC transporter-like YP_3362 IPR017871 ABC transporter, conserved site YP_3362 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YP_3362 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3363 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_3363 IPR035906 MetI-like superfamily YP_3363 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YP_3364 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_3364 IPR035906 MetI-like superfamily YP_3365 IPR000914 Solute-binding protein family 5 domain YP_3365 IPR030678 Peptide/nickel binding protein, MppA-type YP_3365 IPR023765 Solute-binding protein family 5, conserved site YP_3365 IPR039424 Solute-binding protein family 5 YP_3367 IPR035251 ShlB, POTRA domain YP_3367 IPR013686 Polypeptide-transport-associated, ShlB-type YP_3367 IPR027282 Two partner secretion pathway transporter YP_3367 IPR005565 Haemolysin activator HlyB, C-terminal YP_3367 IPR034746 POTRA domain YP_3368 IPR011050 Pectin lyase fold/virulence factor YP_3368 IPR012334 Pectin lyase fold YP_3368 IPR006914 VENN motif-containing domain YP_3368 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_3368 IPR008638 Filamentous haemagglutinin, N-terminal YP_3368 IPR025157 Hemagglutinin repeat YP_3368 IPR008619 Filamentous haemagglutinin repeat YP_3368 IPR006626 Parallel beta-helix repeat YP_3369 IPR011701 Major facilitator superfamily YP_3369 IPR020846 Major facilitator superfamily domain YP_3369 IPR021159 Glycerate/sugar phosphate transporter, conserved site YP_3369 IPR000849 Sugar phosphate transporter YP_3369 IPR036259 MFS transporter superfamily YP_3370 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain YP_3370 IPR005467 Histidine kinase domain YP_3370 IPR003594 Histidine kinase/HSP90-like ATPase YP_3370 IPR007895 MASE1 YP_3370 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3371 IPR011006 CheY-like superfamily YP_3371 IPR000792 Transcription regulator LuxR, C-terminal YP_3371 IPR001789 Signal transduction response regulator, receiver domain YP_3371 IPR016032 Signal transduction response regulator, C-terminal effector YP_3372 IPR000917 Sulfatase, N-terminal YP_3372 IPR012549 Phosphoethanolamine transferase, N-terminal YP_3372 IPR017850 Alkaline-phosphatase-like, core domain superfamily YP_3372 IPR040423 Phosphoethanolamine transferase YP_3374 IPR012354 Esterase/lipase YP_3374 IPR022742 Serine aminopeptidase, S33 YP_3374 IPR029058 Alpha/Beta hydrolase fold YP_3377 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_3377 IPR001270 ClpA/B family YP_3377 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3377 IPR003593 AAA+ ATPase domain YP_3377 IPR002611 IstB-like ATP-binding protein YP_3378 IPR012337 Ribonuclease H-like superfamily YP_3378 IPR006120 Resolvase, HTH domain YP_3378 IPR017894 HTH domain, IS21 transposase-type YP_3378 IPR036397 Ribonuclease H superfamily YP_3378 IPR001584 Integrase, catalytic core YP_3379 IPR008948 L-Aspartase-like YP_3379 IPR022313 Phenylalanine/histidine ammonia-lyases, active site YP_3379 IPR024083 Fumarase/histidase, N-terminal YP_3379 IPR005921 Histidine ammonia-lyase YP_3379 IPR001106 Aromatic amino acid lyase YP_3380 IPR035085 Urocanase, Rossmann-like domain YP_3380 IPR035400 Urocanase, N-terminal domain YP_3380 IPR023637 Urocanase YP_3380 IPR035401 Urocanase, C-terminal domain YP_3380 IPR036190 Urocanase superfamily YP_3380 IPR038364 Urocanase, central domain superfamily YP_3380 IPR023636 Urocanase conserved site YP_3381 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_3381 IPR001926 Pyridoxal-phosphate dependent enzyme YP_3381 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YP_3381 IPR005858 Cysteine synthase CysM YP_3381 IPR005856 Cysteine synthase YP_3382 IPR005764 Adenine phosphoribosyl transferase YP_3382 IPR029057 Phosphoribosyltransferase-like YP_3382 IPR000836 Phosphoribosyltransferase domain YP_3384 IPR011761 ATP-grasp fold YP_3385 IPR033870 FatB domain YP_3385 IPR002491 ABC transporter periplasmic binding domain YP_3386 IPR037294 ABC transporter, BtuC-like YP_3386 IPR000522 ABC transporter, permease protein, BtuC-like YP_3387 IPR037294 ABC transporter, BtuC-like YP_3387 IPR000522 ABC transporter, permease protein, BtuC-like YP_3388 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3388 IPR017871 ABC transporter, conserved site YP_3388 IPR003439 ABC transporter-like YP_3388 IPR003593 AAA+ ATPase domain YP_3393 IPR007684 Zinc finger, Ogr/Delta-type YP_3395 IPR011010 DNA breaking-rejoining enzyme, catalytic core YP_3395 IPR013762 Integrase-like, catalytic domain superfamily YP_3395 IPR002104 Integrase, catalytic domain YP_3395 IPR038488 Integrase, DNA-binding domain superfamily YP_3395 IPR025166 Integrase, DNA-binding domain YP_3395 IPR010998 Integrase/recombinase, N-terminal YP_3395 IPR004107 Integrase, SAM-like, N-terminal YP_3396 IPR018062 HTH domain AraC-type, conserved site YP_3396 IPR009057 Homeobox-like domain superfamily YP_3396 IPR028082 Periplasmic binding protein-like I YP_3396 IPR020449 Transcription regulator HTH, AraC- type YP_3396 IPR018060 DNA binding HTH domain, AraC-type YP_3397 IPR001851 ABC transporter, permease YP_3398 IPR003439 ABC transporter-like YP_3398 IPR017871 ABC transporter, conserved site YP_3398 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3398 IPR003593 AAA+ ATPase domain YP_3398 IPR013455 ABC transporter, D-xylose, ATP-binding protein YP_3399 IPR013456 D-xylose ABC transporter, substrate-binding protein YP_3399 IPR025997 Periplasmic binding protein YP_3399 IPR028082 Periplasmic binding protein-like I YP_3400 IPR013452 Xylose isomerase, bacterial-type YP_3400 IPR036237 Xylose isomerase-like superfamily YP_3400 IPR001998 Xylose isomerase YP_3401 IPR000577 Carbohydrate kinase, FGGY YP_3401 IPR018483 Carbohydrate kinase, FGGY, conserved site YP_3401 IPR018484 Carbohydrate kinase, FGGY, N-terminal YP_3401 IPR006000 Xylulokinase YP_3401 IPR018485 Carbohydrate kinase, FGGY, C-terminal YP_3403 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_3403 IPR016147 Pili assembly chaperone, N-terminal YP_3403 IPR018046 Pili assembly chaperone, conserved site YP_3403 IPR016148 Pili assembly chaperone, C-terminal YP_3403 IPR013783 Immunoglobulin-like fold YP_3403 IPR008962 PapD-like superfamily YP_3403 IPR001829 Pili assembly chaperone, bacterial YP_3404 IPR000015 Outer membrane usher protein YP_3404 IPR025949 PapC-like, C-terminal domain YP_3404 IPR042186 Outer membrane usher protein FimD, plug domain YP_3404 IPR018030 Fimbrial membrane usher, conserved site YP_3404 IPR025885 PapC, N-terminal domain YP_3404 IPR037224 PapC, N-terminal domain superfamily YP_3405 IPR000015 Outer membrane usher protein YP_3405 IPR025949 PapC-like, C-terminal domain YP_3405 IPR042186 Outer membrane usher protein FimD, plug domain YP_3405 IPR018030 Fimbrial membrane usher, conserved site YP_3405 IPR025885 PapC, N-terminal domain YP_3405 IPR037224 PapC, N-terminal domain superfamily YP_3406 IPR008966 Adhesion domain superfamily YP_3406 IPR036937 Fimbrial-type adhesion domain superfamily YP_3406 IPR000259 Fimbrial-type adhesion domain YP_3407 IPR032905 O-acetyltransferase WecH YP_3407 IPR002656 Acyltransferase 3 YP_3409 IPR001584 Integrase, catalytic core YP_3409 IPR012337 Ribonuclease H-like superfamily YP_3409 IPR036397 Ribonuclease H superfamily YP_3409 IPR038965 Transposase InsF-like YP_3409 IPR025948 HTH-like domain YP_3410 IPR000160 GGDEF domain YP_3410 IPR000014 PAS domain YP_3410 IPR001633 EAL domain YP_3410 IPR029787 Nucleotide cyclase YP_3410 IPR005330 MHYT domain YP_3410 IPR035965 PAS domain superfamily YP_3410 IPR035919 EAL domain superfamily YP_3411 IPR006143 RND efflux pump, membrane fusion protein YP_3411 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_3412 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_3412 IPR001036 Acriflavin resistance protein YP_3412 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YP_3413 IPR002110 Ankyrin repeat YP_3413 IPR036770 Ankyrin repeat-containing domain superfamily YP_3413 IPR012927 ShET2 enterotoxin, N-terminal YP_3415 IPR011050 Pectin lyase fold/virulence factor YP_3415 IPR006315 Outer membrane autotransporter barrel YP_3415 IPR036709 Autotransporter beta-domain superfamily YP_3415 IPR005546 Autotransporter beta-domain YP_3416 IPR029487 Novel E3 ligase domain YP_3416 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YP_3416 IPR032675 Leucine-rich repeat domain superfamily YP_3417 IPR032675 Leucine-rich repeat domain superfamily YP_3417 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YP_3417 IPR032675 Leucine-rich repeat domain superfamily YP_3417 IPR029487 Novel E3 ligase domain YP_3417 IPR029487 Novel E3 ligase domain YP_3417 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YP_3418 IPR029487 Novel E3 ligase domain YP_3418 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YP_3418 IPR032675 Leucine-rich repeat domain superfamily YP_3420 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT YP_3420 IPR011540 AbgT, Proteobacteria YP_3421 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YP_3421 IPR036264 Bacterial exopeptidase dimerisation domain YP_3421 IPR002933 Peptidase M20 YP_3421 IPR011650 Peptidase M20, dimerisation domain YP_3421 IPR010161 Peptidase M20B, tripeptide aminopeptidase YP_3422 IPR039426 Vitamin B12 transporter BtuB-like YP_3422 IPR000531 TonB-dependent receptor-like, beta-barrel YP_3422 IPR012910 TonB-dependent receptor, plug domain YP_3422 IPR010105 TonB-dependent siderophore receptor YP_3422 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_3423 IPR010071 Amino acid adenylation domain YP_3423 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YP_3423 IPR042099 AMP-dependent synthetase-like superfamily YP_3423 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3423 IPR006162 Phosphopantetheine attachment site YP_3423 IPR020845 AMP-binding, conserved site YP_3423 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YP_3423 IPR000873 AMP-dependent synthetase/ligase YP_3423 IPR036736 ACP-like superfamily YP_3423 IPR001242 Condensation domain YP_3423 IPR013217 Methyltransferase type 12 YP_3423 IPR009081 Phosphopantetheine binding ACP domain YP_3424 IPR009081 Phosphopantetheine binding ACP domain YP_3424 IPR010071 Amino acid adenylation domain YP_3424 IPR001242 Condensation domain YP_3424 IPR025110 AMP-binding enzyme, C-terminal domain YP_3424 IPR042099 AMP-dependent synthetase-like superfamily YP_3424 IPR000873 AMP-dependent synthetase/ligase YP_3424 IPR020845 AMP-binding, conserved site YP_3424 IPR036736 ACP-like superfamily YP_3424 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YP_3425 IPR010071 Amino acid adenylation domain YP_3425 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3425 IPR013217 Methyltransferase type 12 YP_3425 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YP_3425 IPR009081 Phosphopantetheine binding ACP domain YP_3425 IPR006162 Phosphopantetheine attachment site YP_3425 IPR020845 AMP-binding, conserved site YP_3425 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YP_3425 IPR042099 AMP-dependent synthetase-like superfamily YP_3425 IPR000873 AMP-dependent synthetase/ligase YP_3425 IPR001242 Condensation domain YP_3425 IPR036736 ACP-like superfamily YP_3428 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS YP_3428 IPR001031 Thioesterase YP_3428 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_3428 IPR029058 Alpha/Beta hydrolase fold YP_3428 IPR020802 Polyketide synthase, thioesterase domain YP_3430 IPR017938 Riboflavin synthase-like beta-barrel YP_3430 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3430 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_3430 IPR007037 Siderophore-interacting protein, C-terminal domain YP_3430 IPR011527 ABC transporter type 1, transmembrane domain YP_3430 IPR013113 FAD-binding 9, siderophore-interacting YP_3430 IPR017871 ABC transporter, conserved site YP_3430 IPR003439 ABC transporter-like YP_3430 IPR036640 ABC transporter type 1, transmembrane domain superfamily YP_3430 IPR017927 FAD-binding domain, ferredoxin reductase-type YP_3430 IPR003593 AAA+ ATPase domain YP_3431 IPR039421 Type I protein exporter YP_3431 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3431 IPR011917 ABC transporter, lipid A export, MsbA YP_3431 IPR017871 ABC transporter, conserved site YP_3431 IPR036640 ABC transporter type 1, transmembrane domain superfamily YP_3431 IPR003439 ABC transporter-like YP_3431 IPR011527 ABC transporter type 1, transmembrane domain YP_3431 IPR003593 AAA+ ATPase domain YP_3434 IPR003474 Gluconate transporter YP_3436 IPR036709 Autotransporter beta-domain superfamily YP_3436 IPR013425 Autotransporter-associated beta strand repeat YP_3436 IPR005546 Autotransporter beta-domain YP_3436 IPR011050 Pectin lyase fold/virulence factor YP_3436 IPR006315 Outer membrane autotransporter barrel YP_3436 IPR012332 P22 tailspike-like, C-terminal domain superfamily YP_3437 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YP_3437 IPR037026 Vgr protein, OB-fold domain superfamily YP_3437 IPR006531 Gp5 N-terminal YP_3437 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YP_3439 IPR006530 YD repeat YP_3439 IPR031325 RHS repeat YP_3439 IPR001826 RHS protein YP_3439 IPR022385 Rhs repeat-associated core YP_3442 IPR031312 Sodium/sulphate symporter, conserved site YP_3442 IPR001898 Solute carrier family 13 YP_3443 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_3443 IPR000843 LacI-type HTH domain YP_3443 IPR028082 Periplasmic binding protein-like I YP_3445 IPR039672 Lactose permease-like YP_3445 IPR018043 Sodium:galactoside symporter, conserved site YP_3445 IPR001927 Sodium:galactoside symporter YP_3445 IPR036259 MFS transporter superfamily YP_3445 IPR020846 Major facilitator superfamily domain YP_3446 IPR012910 TonB-dependent receptor, plug domain YP_3446 IPR039426 Vitamin B12 transporter BtuB-like YP_3446 IPR010916 TonB box, conserved site YP_3446 IPR000531 TonB-dependent receptor-like, beta-barrel YP_3446 IPR037066 TonB-dependent receptor, plug domain superfamily YP_3446 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_3446 IPR010917 TonB-dependent receptor, conserved site YP_3446 IPR010105 TonB-dependent siderophore receptor YP_3447 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3447 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YP_3448 IPR022770 Ferric iron reductase FhuF domain YP_3448 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YP_3448 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YP_3449 IPR019432 Siderophore biosynthesis protein, conserved domain YP_3449 IPR016181 Acyl-CoA N-acyltransferase YP_3454 IPR000792 Transcription regulator LuxR, C-terminal YP_3454 IPR016032 Signal transduction response regulator, C-terminal effector YP_3454 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3454 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YP_3454 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YP_3455 IPR001690 Autoinducer synthase YP_3455 IPR016181 Acyl-CoA N-acyltransferase YP_3455 IPR018311 Autoinducer synthesis, conserved site YP_3456 IPR003675 CAAX prenyl protease 2 YP_3458 IPR003220 InsA N-terminal domain YP_3458 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YP_3465 IPR028974 TSP type-3 repeat YP_3465 IPR008722 Outer membrane porin F, N-terminal YP_3465 IPR036737 OmpA-like domain superfamily YP_3465 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_3465 IPR006664 Outer membrane protein, bacterial YP_3465 IPR006665 OmpA-like domain YP_3465 IPR006690 Outer membrane protein, OmpA-like, conserved site YP_3467 IPR018368 ClpA/B, conserved site 1 YP_3467 IPR003959 ATPase, AAA-type, core YP_3467 IPR003593 AAA+ ATPase domain YP_3467 IPR036628 Clp, N-terminal domain superfamily YP_3467 IPR004176 Clp, N-terminal YP_3467 IPR017729 Type VI secretion system, ATPase ClpV1 YP_3467 IPR041546 ClpA/ClpB, AAA lid domain YP_3467 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3467 IPR019489 Clp ATPase, C-terminal YP_3467 IPR001270 ClpA/B family YP_3472 IPR009057 Homeobox-like domain superfamily YP_3472 IPR003220 InsA N-terminal domain YP_3472 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YP_3477 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YP_3477 IPR009057 Homeobox-like domain superfamily YP_3477 IPR003220 InsA N-terminal domain YP_3478 IPR005063 Transposase, IS1 YP_3481 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal YP_3481 IPR027464 Ornithine decarboxylase, N-terminal YP_3481 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal YP_3481 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_3481 IPR000310 Orn/Lys/Arg decarboxylase, major domain YP_3481 IPR011193 Ornithine/lysine/arginine decarboxylase YP_3481 IPR011006 CheY-like superfamily YP_3481 IPR015424 Pyridoxal phosphate-dependent transferase YP_3481 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily YP_3481 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_3482 IPR028082 Periplasmic binding protein-like I YP_3482 IPR025997 Periplasmic binding protein YP_3483 IPR017871 ABC transporter, conserved site YP_3483 IPR015861 ABC transporter, ribose import, RbsA YP_3483 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3483 IPR003439 ABC transporter-like YP_3483 IPR003593 AAA+ ATPase domain YP_3484 IPR001851 ABC transporter, permease YP_3485 IPR039423 TonB-dependent receptor-like YP_3485 IPR037066 TonB-dependent receptor, plug domain superfamily YP_3485 IPR012910 TonB-dependent receptor, plug domain YP_3487 IPR024570 Murein transglycosylase-C, N-terminal YP_3487 IPR000189 Prokaryotic transglycosylase, active site YP_3487 IPR023664 Murein transglycosylase-C YP_3487 IPR023346 Lysozyme-like domain superfamily YP_3487 IPR008258 Transglycosylase SLT domain 1 YP_3488 IPR007457 Fe(II) trafficking protein YggX YP_3488 IPR036766 Fe(II) trafficking protein YggX superfamily YP_3489 IPR005760 A/G-specific adenine glycosylase MutY YP_3489 IPR015797 NUDIX hydrolase-like domain superfamily YP_3489 IPR029119 MutY, C-terminal YP_3489 IPR004036 Endonuclease III-like, conserved site-2 YP_3489 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif YP_3489 IPR004035 Endonuclease III, iron-sulphur binding site YP_3489 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal YP_3489 IPR003265 HhH-GPD domain YP_3489 IPR000445 Helix-hairpin-helix motif YP_3489 IPR011257 DNA glycosylase YP_3490 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type YP_3490 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3491 IPR007416 Protein of unknown function DUF469 YP_3492 IPR015868 Glutaminase YP_3492 IPR012338 Beta-lactamase/transpeptidase-like YP_3494 IPR011049 Serralysin-like metalloprotease, C-terminal YP_3494 IPR038383 CGT/MARTX, cysteine protease (CPD) domain superfamily YP_3494 IPR011509 RtxA toxin YP_3494 IPR029058 Alpha/Beta hydrolase fold YP_3494 IPR022742 Serine aminopeptidase, S33 YP_3494 IPR020974 CGT/MARTX, cysteine protease (CPD) domain YP_3494 IPR032074 Actin cross-linking domain YP_3494 IPR020972 Dermonecrotic/RTX toxin, membrane localization domain YP_3495 IPR001207 Transposase, mutator type YP_3496 IPR004559 Heme chaperone HemW-like YP_3496 IPR023404 Radical SAM, alpha/beta horseshoe YP_3496 IPR006638 Elp3/MiaB/NifB YP_3496 IPR034505 Anaerobic coproporphyrinogen-III oxidase YP_3496 IPR007197 Radical SAM YP_3496 IPR010723 HemN, C-terminal YP_3497 IPR029001 Inosine triphosphate pyrophosphatase-like YP_3497 IPR002637 Ham1-like protein YP_3497 IPR020922 dITP/XTP pyrophosphatase YP_3498 IPR036591 YggU-like superfamily YP_3498 IPR003746 Protein of unknown function DUF167 YP_3498 IPR005228 Conserved hypothetical protein CHP00251 YP_3499 IPR003425 CCB3/YggT YP_3500 IPR036291 NAD(P)-binding domain superfamily YP_3500 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal YP_3500 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YP_3500 IPR000304 Pyrroline-5-carboxylate reductase YP_3500 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain YP_3501 IPR001608 Alanine racemase, N-terminal YP_3501 IPR029066 PLP-binding barrel YP_3501 IPR011078 Pyridoxal phosphate homeostasis protein YP_3502 IPR003593 AAA+ ATPase domain YP_3502 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3502 IPR006321 Pilus retraction protein PilT YP_3502 IPR001482 Type II/IV secretion system protein YP_3503 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type YP_3503 IPR017754 Agmatine deiminase YP_3504 IPR036526 Carbon-nitrogen hydrolase superfamily YP_3504 IPR023719 Aliphatic amidase YP_3504 IPR003010 Carbon-nitrogen hydrolase YP_3505 IPR006641 YqgF/RNase H-like domain YP_3505 IPR005227 Putative pre-16S rRNA nuclease YP_3505 IPR012337 Ribonuclease H-like superfamily YP_3505 IPR037027 YqgF/RNase H-like domain superfamily YP_3506 IPR003774 Protein of unknown function UPF0301 YP_3507 IPR016185 Pre-ATP-grasp domain superfamily YP_3507 IPR004215 Prokaryotic glutathione synthetase, N-terminal YP_3507 IPR004218 Prokaryotic glutathione synthetase, ATP-binding YP_3507 IPR013815 ATP-grasp fold, subdomain 1 YP_3507 IPR011761 ATP-grasp fold YP_3507 IPR006284 Glutathione synthetase, prokaryotic YP_3508 IPR029028 Alpha/beta knot methyltransferases YP_3508 IPR006700 Ribosomal RNA small subunit methyltransferase E YP_3508 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YP_3508 IPR015947 PUA-like superfamily YP_3510 IPR007346 Endonuclease I YP_3511 IPR023483 Uncharacterised protein family SprT YP_3511 IPR006640 SprT-like YP_3511 IPR035240 SprT-like, zinc ribbon domain YP_3512 IPR022629 S-adenosylmethionine synthetase, central domain YP_3512 IPR022631 S-adenosylmethionine synthetase, conserved site YP_3512 IPR022628 S-adenosylmethionine synthetase, N-terminal YP_3512 IPR022636 S-adenosylmethionine synthetase superfamily YP_3512 IPR022630 S-adenosylmethionine synthetase, C-terminal YP_3512 IPR002133 S-adenosylmethionine synthetase YP_3513 IPR000183 Ornithine/DAP/Arg decarboxylase YP_3513 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YP_3513 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YP_3513 IPR041128 Arginine decarboxylase, C-terminal helical YP_3513 IPR002985 Arginine decarboxylase YP_3513 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YP_3513 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal YP_3513 IPR040634 Arginine decarboxylase, helical bundle domain YP_3513 IPR029066 PLP-binding barrel YP_3514 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily YP_3514 IPR017941 Rieske [2Fe-2S] iron-sulphur domain YP_3515 IPR001915 Peptidase M48 YP_3516 IPR020826 Transketolase binding site YP_3516 IPR033248 Transketolase, C-terminal domain YP_3516 IPR005478 Transketolase, bacterial-like YP_3516 IPR005475 Transketolase-like, pyrimidine-binding domain YP_3516 IPR033247 Transketolase family YP_3516 IPR029061 Thiamin diphosphate-binding fold YP_3516 IPR005474 Transketolase, N-terminal YP_3516 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YP_3517 IPR036515 Transposase IS200-like superfamily YP_3517 IPR002686 Transposase IS200-like YP_3518 IPR036291 NAD(P)-binding domain superfamily YP_3518 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YP_3518 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_3518 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site YP_3518 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family YP_3518 IPR006422 D-erythrose-4-phosphate dehydrogenase YP_3519 IPR015824 Phosphoglycerate kinase, N-terminal YP_3519 IPR015911 Phosphoglycerate kinase, conserved site YP_3519 IPR036043 Phosphoglycerate kinase superfamily YP_3519 IPR001576 Phosphoglycerate kinase YP_3520 IPR000771 Fructose-bisphosphate aldolase, class-II YP_3520 IPR013785 Aldolase-type TIM barrel YP_3520 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype YP_3521 IPR023408 Mechanosensitive ion channel MscS domain superfamily YP_3521 IPR008910 Conserved TM helix YP_3521 IPR006686 Mechanosensitive ion channel MscS, conserved site YP_3521 IPR011066 Mechanosensitive ion channel MscS, C-terminal YP_3521 IPR006685 Mechanosensitive ion channel MscS YP_3521 IPR010920 LSM domain superfamily YP_3521 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YP_3523 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3523 IPR002611 IstB-like ATP-binding protein YP_3523 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_3523 IPR003593 AAA+ ATPase domain YP_3523 IPR001270 ClpA/B family YP_3524 IPR012337 Ribonuclease H-like superfamily YP_3524 IPR036397 Ribonuclease H superfamily YP_3524 IPR006120 Resolvase, HTH domain YP_3524 IPR001584 Integrase, catalytic core YP_3524 IPR017894 HTH domain, IS21 transposase-type YP_3525 IPR002686 Transposase IS200-like YP_3525 IPR036515 Transposase IS200-like superfamily YP_3526 IPR000917 Sulfatase, N-terminal YP_3526 IPR017850 Alkaline-phosphatase-like, core domain superfamily YP_3527 IPR036390 Winged helix DNA-binding domain superfamily YP_3527 IPR014036 DeoR C-terminal sensor domain YP_3527 IPR001034 DeoR-type HTH domain YP_3527 IPR037171 NagB/RpiA transferase-like YP_3527 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YP_3527 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3528 IPR023435 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit KbaZ YP_3528 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ-like YP_3528 IPR013785 Aldolase-type TIM barrel YP_3529 IPR001347 Sugar isomerase (SIS) YP_3529 IPR035464 AgaS, SIS domain YP_3529 IPR014180 Sugar isomerase, AgaS YP_3529 IPR035466 GlmS/AgaS, SIS domain 1 YP_3530 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily YP_3530 IPR004720 Phosphotransferase system, sorbose subfamily IIB component YP_3530 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup YP_3531 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit YP_3532 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component YP_3533 IPR004701 Phosphotransferase system, mannose-type IIA component YP_3533 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily YP_3533 IPR033887 PTS system mannose/sorbose specific IIA subunit YP_3534 IPR006680 Amidohydrolase-related YP_3534 IPR032466 Metal-dependent hydrolase YP_3534 IPR011059 Metal-dependent hydrolase, composite domain superfamily YP_3534 IPR003764 N-acetylglucosamine-6-phosphate deacetylase YP_3535 IPR002347 Short-chain dehydrogenase/reductase SDR YP_3535 IPR020904 Short-chain dehydrogenase/reductase, conserved site YP_3535 IPR036291 NAD(P)-binding domain superfamily YP_3535 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase YP_3537 IPR034491 Anaerobic Ser-type sulfatase-maturating enzyme YP_3537 IPR013785 Aldolase-type TIM barrel YP_3537 IPR007197 Radical SAM YP_3537 IPR023885 4Fe4S-binding SPASM domain YP_3538 IPR024607 Sulfatase, conserved site YP_3538 IPR000917 Sulfatase, N-terminal YP_3538 IPR017850 Alkaline-phosphatase-like, core domain superfamily YP_3540 IPR023955 D-tagatose-bisphosphate aldolase, class II, subunit GatY YP_3540 IPR013785 Aldolase-type TIM barrel YP_3540 IPR000771 Fructose-bisphosphate aldolase, class-II YP_3540 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY YP_3543 IPR023588 Transcription regulator HTH, PurR YP_3543 IPR000843 LacI-type HTH domain YP_3543 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_3543 IPR028082 Periplasmic binding protein-like I YP_3544 IPR020846 Major facilitator superfamily domain YP_3544 IPR011701 Major facilitator superfamily YP_3544 IPR036259 MFS transporter superfamily YP_3545 IPR033403 Domain of unknown function DUF5110 YP_3545 IPR030458 Glycosyl hydrolases family 31, active site YP_3545 IPR000322 Glycoside hydrolase family 31 YP_3545 IPR017853 Glycoside hydrolase superfamily YP_3545 IPR025887 Glycoside hydrolase family 31, N-terminal domain YP_3545 IPR030459 Glycosyl hydrolases family 31, conserved site YP_3545 IPR013780 Glycosyl hydrolase, all-beta YP_3545 IPR032513 Alpha-glucosidase, domain of unknown function DUF4968 YP_3545 IPR011013 Galactose mutarotase-like domain superfamily YP_3546 IPR000843 LacI-type HTH domain YP_3546 IPR028082 Periplasmic binding protein-like I YP_3546 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_3547 IPR023738 Maltoporin YP_3547 IPR003192 Porin, LamB-type YP_3547 IPR036998 Porin, LamB-type superfamily YP_3549 IPR013739 Beta-galactosidase C-terminal YP_3549 IPR013738 Beta-galactosidase trimerisation YP_3549 IPR013780 Glycosyl hydrolase, all-beta YP_3549 IPR029062 Class I glutamine amidotransferase-like YP_3549 IPR003476 Glycoside hydrolase, family 42 YP_3549 IPR017853 Glycoside hydrolase superfamily YP_3549 IPR013529 Glycoside hydrolase, family 42, N-terminal YP_3550 IPR017853 Glycoside hydrolase superfamily YP_3550 IPR011683 Glycosyl hydrolase family 53 YP_3551 IPR035906 MetI-like superfamily YP_3551 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_3552 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_3552 IPR035906 MetI-like superfamily YP_3553 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein YP_3553 IPR006059 Bacterial extracellular solute-binding protein YP_3554 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3554 IPR003593 AAA+ ATPase domain YP_3554 IPR003439 ABC transporter-like YP_3554 IPR040582 MalK, OB fold domain YP_3554 IPR017871 ABC transporter, conserved site YP_3554 IPR008995 Molybdate/tungstate binding, C-terminal YP_3555 IPR017871 ABC transporter, conserved site YP_3555 IPR003439 ABC transporter-like YP_3555 IPR003593 AAA+ ATPase domain YP_3555 IPR015861 ABC transporter, ribose import, RbsA YP_3555 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3556 IPR001851 ABC transporter, permease YP_3557 IPR025997 Periplasmic binding protein YP_3557 IPR028082 Periplasmic binding protein-like I YP_3559 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YP_3559 IPR038765 Papain-like cysteine peptidase superfamily YP_3561 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3561 IPR005149 Transcription regulator PadR, N-terminal YP_3561 IPR036390 Winged helix DNA-binding domain superfamily YP_3579 IPR022452 Antitoxin MqsA YP_3579 IPR022453 Zinc finger, MqsA-type YP_3579 IPR001387 Cro/C1-type helix-turn-helix domain YP_3579 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_3579 IPR032758 Antitoxin MqsA/HigA-2 YP_3580 IPR038493 Toxin MqsR superfamily YP_3580 IPR031451 mRNA interferase toxin MqsR YP_3583 IPR013762 Integrase-like, catalytic domain superfamily YP_3583 IPR004107 Integrase, SAM-like, N-terminal YP_3583 IPR038488 Integrase, DNA-binding domain superfamily YP_3583 IPR011010 DNA breaking-rejoining enzyme, catalytic core YP_3583 IPR002104 Integrase, catalytic domain YP_3583 IPR010998 Integrase/recombinase, N-terminal YP_3583 IPR025166 Integrase, DNA-binding domain YP_3584 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YP_3584 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YP_3584 IPR006195 Aminoacyl-tRNA synthetase, class II YP_3584 IPR002313 Lysine-tRNA ligase, class II YP_3584 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II YP_3584 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal YP_3584 IPR012340 Nucleic acid-binding, OB-fold YP_3585 IPR000352 Peptide chain release factor class I YP_3585 IPR004374 Peptide chain release factor 2 YP_3585 IPR005139 Peptide chain release factor YP_3586 IPR004610 Bacterial RecJ exonuclease YP_3586 IPR038763 DHH phosphoesterase superfamily YP_3586 IPR041122 RecJ, OB domain YP_3586 IPR003156 DHHA1 domain YP_3586 IPR001667 DDH domain YP_3587 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily YP_3587 IPR036249 Thioredoxin-like superfamily YP_3587 IPR033954 Disulphide bond isomerase, DsbC/G YP_3587 IPR012336 Thioredoxin-like fold YP_3587 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal YP_3587 IPR017937 Thioredoxin, conserved site YP_3587 IPR013766 Thioredoxin domain YP_3588 IPR010998 Integrase/recombinase, N-terminal YP_3588 IPR013762 Integrase-like, catalytic domain superfamily YP_3588 IPR004107 Integrase, SAM-like, N-terminal YP_3588 IPR011932 Tyrosine recombinase XerD YP_3588 IPR023009 Tyrosine recombinase XerC/XerD YP_3588 IPR011010 DNA breaking-rejoining enzyme, catalytic core YP_3588 IPR002104 Integrase, catalytic domain YP_3589 IPR008254 Flavodoxin/nitric oxide synthase YP_3589 IPR029039 Flavoprotein-like superfamily YP_3589 IPR010086 Flavodoxin, long chain YP_3589 IPR001226 Flavodoxin, conserved site YP_3590 IPR010364 Uncharacterised protein family, inner membrane CreD YP_3591 IPR029151 Periplasmic sensor-like domain superfamily YP_3591 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_3591 IPR005467 Histidine kinase domain YP_3591 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3591 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_3591 IPR003660 HAMP domain YP_3591 IPR003594 Histidine kinase/HSP90-like ATPase YP_3591 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_3592 IPR016032 Signal transduction response regulator, C-terminal effector YP_3592 IPR001789 Signal transduction response regulator, receiver domain YP_3592 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3592 IPR039420 Transcriptional regulatory protein WalR-like YP_3592 IPR001867 OmpR/PhoB-type DNA-binding domain YP_3592 IPR011006 CheY-like superfamily YP_3593 IPR009883 Inner membrane protein YgfX YP_3594 IPR036714 Flavinator of succinate dehydrogenase superfamily YP_3594 IPR005631 Flavinator of succinate dehydrogenase YP_3595 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal YP_3595 IPR006222 Aminomethyltransferase, folate-binding domain YP_3595 IPR023758 tRNA-modifying protein YgfZ YP_3595 IPR017703 YgfZ/GcvT conserved site YP_3597 IPR005744 Hly-III YP_3597 IPR004254 AdipoR/Haemolysin-III-related YP_3602 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YP_3602 IPR020581 Glycine cleavage system P protein YP_3602 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_3602 IPR003437 Glycine dehydrogenase (decarboxylating) YP_3602 IPR015424 Pyridoxal phosphate-dependent transferase YP_3603 IPR002930 Glycine cleavage system H-protein YP_3603 IPR000089 Biotin/lipoyl attachment YP_3603 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YP_3603 IPR017453 Glycine cleavage system H-protein, subgroup YP_3603 IPR011053 Single hybrid motif YP_3603 IPR033753 Glycine cleavage system H-protein/Simiate YP_3604 IPR028896 Aminomethyltransferase-like YP_3604 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain YP_3604 IPR006223 Glycine cleavage system T protein YP_3604 IPR022903 Glycine cleavage system T protein, bacteria YP_3604 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 YP_3604 IPR006222 Aminomethyltransferase, folate-binding domain YP_3604 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal YP_3605 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 YP_3605 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3605 IPR002938 FAD-binding domain YP_3605 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YP_3606 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 YP_3606 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase YP_3606 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YP_3606 IPR002938 FAD-binding domain YP_3606 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3607 IPR036005 Creatinase/aminopeptidase-like YP_3607 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YP_3607 IPR001714 Peptidase M24, methionine aminopeptidase YP_3607 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YP_3607 IPR000994 Peptidase M24 YP_3607 IPR007865 Aminopeptidase P, N-terminal YP_3608 IPR011978 Uncharacterised protein family UPF0149 YP_3608 IPR036255 YgfB-like superfamily YP_3609 IPR023771 Cell division protein ZapA, eubacteria YP_3609 IPR036192 Cell division protein ZapA-like superfamily YP_3609 IPR007838 Cell division protein ZapA-like YP_3610 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily YP_3610 IPR002698 5-formyltetrahydrofolate cyclo-ligase YP_3610 IPR037171 NagB/RpiA transferase-like YP_3611 IPR002912 ACT domain YP_3611 IPR036291 NAD(P)-binding domain superfamily YP_3611 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YP_3611 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YP_3611 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YP_3611 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_3612 IPR037171 NagB/RpiA transferase-like YP_3612 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup YP_3612 IPR004788 Ribose 5-phosphate isomerase, type A YP_3613 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria YP_3613 IPR000847 Transcription regulator HTH, LysR YP_3613 IPR017685 HTH-type transcriptional regulator ArgP YP_3613 IPR036390 Winged helix DNA-binding domain superfamily YP_3613 IPR005119 LysR, substrate-binding YP_3613 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3614 IPR007497 Protein of unknown function DUF541 YP_3616 IPR017894 HTH domain, IS21 transposase-type YP_3616 IPR001584 Integrase, catalytic core YP_3616 IPR036397 Ribonuclease H superfamily YP_3616 IPR012337 Ribonuclease H-like superfamily YP_3616 IPR006120 Resolvase, HTH domain YP_3617 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_3617 IPR003593 AAA+ ATPase domain YP_3617 IPR001270 ClpA/B family YP_3617 IPR002611 IstB-like ATP-binding protein YP_3617 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3619 IPR000086 NUDIX hydrolase domain YP_3619 IPR020084 NUDIX hydrolase, conserved site YP_3619 IPR015797 NUDIX hydrolase-like domain superfamily YP_3619 IPR003561 Mutator MutT YP_3619 IPR020476 NUDIX hydrolase YP_3620 IPR011115 SecA DEAD-like, N-terminal YP_3620 IPR011130 SecA, preprotein cross-linking domain YP_3620 IPR000185 Protein translocase subunit SecA YP_3620 IPR004027 SEC-C motif YP_3620 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3620 IPR020937 SecA conserved site YP_3620 IPR014018 SecA motor DEAD YP_3620 IPR011116 SecA Wing/Scaffold YP_3620 IPR036266 SecA, Wing/Scaffold superfamily YP_3620 IPR036670 SecA, preprotein cross-linking domain superfamily YP_3621 IPR009502 Secretion monitor YP_3623 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal YP_3623 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal YP_3623 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase YP_3623 IPR020568 Ribosomal protein S5 domain 2-type fold YP_3624 IPR008280 Tubulin/FtsZ, C-terminal YP_3624 IPR024757 Cell division protein FtsZ, C-terminal YP_3624 IPR020805 Cell division protein FtsZ, conserved site YP_3624 IPR003008 Tubulin/FtsZ, GTPase domain YP_3624 IPR000158 Cell division protein FtsZ YP_3624 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain YP_3624 IPR036525 Tubulin/FtsZ, GTPase domain superfamily YP_3625 IPR003494 SHS2 domain inserted in FtsA YP_3625 IPR020823 Cell division protein FtsA YP_3626 IPR026579 Cell division protein FtsQ YP_3626 IPR034746 POTRA domain YP_3626 IPR013685 POTRA domain, FtsQ-type YP_3626 IPR005548 Cell division protein FtsQ/DivIB YP_3627 IPR005905 D-alanine--D-alanine ligase YP_3627 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site YP_3627 IPR011127 D-alanine--D-alanine ligase, N-terminal domain YP_3627 IPR011095 D-alanine--D-alanine ligase, C-terminal YP_3627 IPR011761 ATP-grasp fold YP_3627 IPR013815 ATP-grasp fold, subdomain 1 YP_3627 IPR016185 Pre-ATP-grasp domain superfamily YP_3628 IPR036565 Mur-like, catalytic domain superfamily YP_3628 IPR004101 Mur ligase, C-terminal YP_3628 IPR036615 Mur ligase, C-terminal domain superfamily YP_3628 IPR013221 Mur ligase, central YP_3628 IPR005758 UDP-N-acetylmuramate--L-alanine ligase YP_3628 IPR000713 Mur ligase, N-terminal catalytic domain YP_3629 IPR004276 Glycosyltransferase family 28, N-terminal domain YP_3629 IPR007235 Glycosyl transferase, family 28, C-terminal YP_3629 IPR006009 N-acetylglucosaminyltransferase, MurG YP_3630 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA YP_3630 IPR013437 Probable peptidoglycan glycosyltransferase FtsW YP_3630 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site YP_3631 IPR036615 Mur ligase, C-terminal domain superfamily YP_3631 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase YP_3631 IPR013221 Mur ligase, central YP_3631 IPR004101 Mur ligase, C-terminal YP_3631 IPR036565 Mur-like, catalytic domain superfamily YP_3632 IPR000715 Glycosyl transferase, family 4 YP_3632 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_3632 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase YP_3633 IPR036615 Mur ligase, C-terminal domain superfamily YP_3633 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YP_3633 IPR035911 MurE/MurF, N-terminal YP_3633 IPR000713 Mur ligase, N-terminal catalytic domain YP_3633 IPR013221 Mur ligase, central YP_3633 IPR004101 Mur ligase, C-terminal YP_3633 IPR036565 Mur-like, catalytic domain superfamily YP_3634 IPR035911 MurE/MurF, N-terminal YP_3634 IPR000713 Mur ligase, N-terminal catalytic domain YP_3634 IPR013221 Mur ligase, central YP_3634 IPR036615 Mur ligase, C-terminal domain superfamily YP_3634 IPR004101 Mur ligase, C-terminal YP_3634 IPR036565 Mur-like, catalytic domain superfamily YP_3634 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase YP_3635 IPR037532 Peptidoglycan D,D-transpeptidase FtsI YP_3635 IPR012338 Beta-lactamase/transpeptidase-like YP_3635 IPR005311 Penicillin-binding protein, dimerisation domain YP_3635 IPR036138 Penicillin-binding protein, dimerisation domain superfamily YP_3635 IPR001460 Penicillin-binding protein, transpeptidase YP_3636 IPR011922 Cell division protein FtsL YP_3637 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3637 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily YP_3637 IPR002903 Ribosomal RNA small subunit methyltransferase H YP_3638 IPR038619 MraZ superfamily YP_3638 IPR003444 Transcriptional regulator MraZ YP_3638 IPR035644 MraZ, C-terminal YP_3638 IPR020603 MraZ domain YP_3638 IPR035642 MraZ, N-terminal YP_3638 IPR007159 SpoVT-AbrB domain YP_3638 IPR037914 SpoVT-AbrB domain superfamily YP_3639 IPR010574 L-alanine exporter AlaE YP_3640 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_3640 IPR028082 Periplasmic binding protein-like I YP_3640 IPR012781 D-fructose-responsive transcription factor YP_3640 IPR000843 LacI-type HTH domain YP_3640 IPR001761 Periplasmic binding protein/LacI sugar binding domain YP_3641 IPR036515 Transposase IS200-like superfamily YP_3641 IPR002686 Transposase IS200-like YP_3643 IPR000847 Transcription regulator HTH, LysR YP_3643 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3643 IPR036390 Winged helix DNA-binding domain superfamily YP_3643 IPR005119 LysR, substrate-binding YP_3645 IPR020845 AMP-binding, conserved site YP_3645 IPR000873 AMP-dependent synthetase/ligase YP_3645 IPR042099 AMP-dependent synthetase-like superfamily YP_3646 IPR039368 Acetolactate synthase large subunit, TPP binding domain YP_3646 IPR029035 DHS-like NAD/FAD-binding domain superfamily YP_3646 IPR029061 Thiamin diphosphate-binding fold YP_3646 IPR012000 Thiamine pyrophosphate enzyme, central domain YP_3646 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YP_3646 IPR000399 TPP-binding enzyme, conserved site YP_3646 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_3646 IPR012846 Acetolactate synthase, large subunit, biosynthetic YP_3647 IPR019455 Acetolactate synthase, small subunit, C-terminal YP_3647 IPR004789 Acetolactate synthase, small subunit YP_3647 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal YP_3647 IPR002912 ACT domain YP_3647 IPR039557 AHAS, ACT domain YP_3648 IPR002686 Transposase IS200-like YP_3648 IPR036515 Transposase IS200-like superfamily YP_3649 IPR000891 Pyruvate carboxyltransferase YP_3649 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_3649 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site YP_3649 IPR013785 Aldolase-type TIM barrel YP_3649 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily YP_3649 IPR005671 2-isopropylmalate synthase, bacterial-type YP_3650 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YP_3650 IPR024084 Isopropylmalate dehydrogenase-like domain YP_3650 IPR004429 Isopropylmalate dehydrogenase YP_3651 IPR018136 Aconitase family, 4Fe-4S cluster binding site YP_3651 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain YP_3651 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YP_3651 IPR033941 3-Isopropylmalate dehydratase, catalytic domain YP_3651 IPR004430 3-isopropylmalate dehydratase, large subunit YP_3651 IPR036008 Aconitase, iron-sulfur domain YP_3652 IPR033940 3-isopropylmalate dehydratase, swivel domain YP_3652 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YP_3652 IPR004431 3-isopropylmalate dehydratase, small subunit YP_3652 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain YP_3653 IPR036259 MFS transporter superfamily YP_3653 IPR011701 Major facilitator superfamily YP_3653 IPR004750 Sugar efflux YP_3653 IPR020846 Major facilitator superfamily domain YP_3655 IPR000914 Solute-binding protein family 5 domain YP_3655 IPR039424 Solute-binding protein family 5 YP_3655 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YP_3655 IPR023767 Transcriptional regulator SgrR YP_3655 IPR036390 Winged helix DNA-binding domain superfamily YP_3657 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter YP_3657 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria YP_3657 IPR006061 Solute-binding family 1, conserved site YP_3658 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_3658 IPR035906 MetI-like superfamily YP_3658 IPR005947 Thiamine ABC transporter, permease protein YP_3659 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ YP_3659 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3659 IPR017871 ABC transporter, conserved site YP_3659 IPR003439 ABC transporter-like YP_3659 IPR003593 AAA+ ATPase domain YP_3660 IPR032818 DedA family YP_3660 IPR032816 SNARE associated Golgi protein YP_3661 IPR036397 Ribonuclease H superfamily YP_3661 IPR042087 DNA polymerase family B, C-terminal domain YP_3661 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain YP_3661 IPR017964 DNA-directed DNA polymerase, family B, conserved site YP_3661 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain YP_3661 IPR006172 DNA-directed DNA polymerase, family B YP_3661 IPR012337 Ribonuclease H-like superfamily YP_3661 IPR023211 DNA polymerase, palm domain superfamily YP_3662 IPR040765 RapA, N-terminal Tudor like domain 1 YP_3662 IPR000330 SNF2-related, N-terminal domain YP_3662 IPR038718 SNF2-like, N-terminal domain superfamily YP_3662 IPR022737 RNA polymerase recycling, bacterial, C-terminal YP_3662 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3662 IPR040766 RapA, N-terminal Tudor-like domain 2 YP_3662 IPR023949 RNA polymerase-associated protein RapA YP_3662 IPR001650 Helicase, C-terminal YP_3662 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_3665 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_3665 IPR006664 Outer membrane protein, bacterial YP_3665 IPR006665 OmpA-like domain YP_3665 IPR006690 Outer membrane protein, OmpA-like, conserved site YP_3665 IPR036737 OmpA-like domain superfamily YP_3665 IPR008722 Outer membrane porin F, N-terminal YP_3672 IPR006531 Gp5 N-terminal YP_3672 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YP_3672 IPR037026 Vgr protein, OB-fold domain superfamily YP_3672 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YP_3673 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3673 IPR017729 Type VI secretion system, ATPase ClpV1 YP_3673 IPR019489 Clp ATPase, C-terminal YP_3673 IPR004176 Clp, N-terminal YP_3673 IPR001270 ClpA/B family YP_3673 IPR018368 ClpA/B, conserved site 1 YP_3673 IPR041546 ClpA/ClpB, AAA lid domain YP_3673 IPR036628 Clp, N-terminal domain superfamily YP_3673 IPR003959 ATPase, AAA-type, core YP_3673 IPR003593 AAA+ ATPase domain YP_3682 IPR006145 Pseudouridine synthase, RsuA/RluA YP_3682 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YP_3682 IPR020103 Pseudouridine synthase, catalytic domain superfamily YP_3683 IPR023749 Co-chaperone DjlA YP_3683 IPR001623 DnaJ domain YP_3683 IPR029024 TerB-like YP_3683 IPR007791 Co-chaperone DjlA, N-terminal YP_3683 IPR036869 Chaperone J-domain superfamily YP_3684 IPR005653 Organic solvent tolerance-like, N-terminal YP_3684 IPR020889 LPS-assembly protein LptD YP_3684 IPR007543 LptD, C-terminal YP_3685 IPR027304 Trigger factor/SurA domain superfamily YP_3685 IPR015391 SurA N-terminal YP_3685 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YP_3685 IPR023034 Peptidyl-prolyl isomerase SurA YP_3686 IPR005255 PdxA family YP_3686 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase YP_3687 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3687 IPR011530 Ribosomal RNA adenine dimethylase YP_3687 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal YP_3687 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm YP_3687 IPR023165 rRNA adenine dimethylase-like YP_3687 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site YP_3688 IPR036767 ApaG domain superfamily YP_3688 IPR007474 ApaG domain YP_3688 IPR023065 Uncharacterised protein family ApaG YP_3689 IPR029052 Metallo-dependent phosphatase-like YP_3689 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YP_3689 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YP_3693 IPR012259 Dihydrofolate reductase YP_3693 IPR024072 Dihydrofolate reductase-like domain superfamily YP_3693 IPR001796 Dihydrofolate reductase domain YP_3693 IPR017925 Dihydrofolate reductase conserved site YP_3694 IPR020914 Uncharacterised protein family UPF0442 YP_3694 IPR024528 Threonine/Serine exporter, ThrE YP_3695 IPR010619 Putative threonine/serine exporter YP_3696 IPR001123 Amino acid exporter protein, LeuE-type YP_3696 IPR004778 Homoserine/Threonine efflux protein YP_3697 IPR011761 ATP-grasp fold YP_3697 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain YP_3697 IPR016185 Pre-ATP-grasp domain superfamily YP_3697 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain YP_3697 IPR036914 Methylglyoxal synthase-like domain superfamily YP_3697 IPR011607 Methylglyoxal synthase-like domain YP_3697 IPR006275 Carbamoyl-phosphate synthase, large subunit YP_3697 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain YP_3697 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain YP_3697 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily YP_3698 IPR006274 Carbamoyl-phosphate synthase, small subunit YP_3698 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily YP_3698 IPR029062 Class I glutamine amidotransferase-like YP_3698 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain YP_3698 IPR017926 Glutamine amidotransferase YP_3698 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain YP_3699 IPR022663 Dihydrodipicolinate reductase, C-terminal YP_3699 IPR036291 NAD(P)-binding domain superfamily YP_3699 IPR023940 Dihydrodipicolinate reductase YP_3699 IPR022664 Dihydrodipicolinate reductase, conserved site YP_3699 IPR000846 Dihydrodipicolinate reductase, N-terminal YP_3700 IPR002686 Transposase IS200-like YP_3700 IPR036515 Transposase IS200-like superfamily YP_3702 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_3703 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YP_3704 IPR001872 Peptidase A8, signal peptidase II YP_3705 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain YP_3705 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YP_3705 IPR002301 Isoleucine-tRNA ligase YP_3705 IPR023585 Isoleucine-tRNA ligase, type 1 YP_3705 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YP_3705 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_3705 IPR002300 Aminoacyl-tRNA synthetase, class Ia YP_3705 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YP_3705 IPR010663 Zinc finger, FPG/IleRS-type YP_3705 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YP_3706 IPR015864 FAD synthetase YP_3706 IPR023468 Riboflavin kinase YP_3706 IPR002606 Riboflavin kinase, bacterial YP_3706 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic YP_3706 IPR023465 Riboflavin kinase domain superfamily YP_3706 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_3708 IPR002583 Ribosomal protein S20 YP_3708 IPR036510 Ribosomal protein S20 superfamily YP_3709 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3709 IPR036390 Winged helix DNA-binding domain superfamily YP_3709 IPR000847 Transcription regulator HTH, LysR YP_3709 IPR005119 LysR, substrate-binding YP_3710 IPR004670 Na+/H+ antiporter NhaA YP_3710 IPR023171 Na/H antiporter domain superfamily YP_3711 IPR002939 Chaperone DnaJ, C-terminal YP_3711 IPR001623 DnaJ domain YP_3711 IPR008971 HSP40/DnaJ peptide-binding YP_3711 IPR001305 Heat shock protein DnaJ, cysteine-rich domain YP_3711 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily YP_3711 IPR036869 Chaperone J-domain superfamily YP_3711 IPR018253 DnaJ domain, conserved site YP_3711 IPR012724 Chaperone DnaJ YP_3712 IPR012725 Chaperone DnaK YP_3712 IPR013126 Heat shock protein 70 family YP_3712 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily YP_3712 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily YP_3712 IPR018181 Heat shock protein 70, conserved site YP_3713 IPR000791 Acetate transporter GPR1/FUN34/SatP family YP_3715 IPR020846 Major facilitator superfamily domain YP_3715 IPR011701 Major facilitator superfamily YP_3715 IPR036259 MFS transporter superfamily YP_3715 IPR005829 Sugar transporter, conserved site YP_3716 IPR008284 Molybdenum cofactor biosynthesis, conserved site YP_3716 IPR001453 MoaB/Mog domain YP_3716 IPR036425 MoaB/Mog-like domain superfamily YP_3718 IPR004730 Transaldolase type 1 YP_3718 IPR001585 Transaldolase/Fructose-6-phosphate aldolase YP_3718 IPR013785 Aldolase-type TIM barrel YP_3718 IPR018225 Transaldolase, active site YP_3720 IPR005583 Peroxide stress protein YaaA YP_3721 IPR001926 Pyridoxal-phosphate dependent enzyme YP_3721 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YP_3721 IPR029144 Threonine synthase, N-terminal YP_3721 IPR037158 Threonine synthase, N-terminal domain superfamily YP_3721 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_3721 IPR004450 Threonine synthase-like YP_3722 IPR013750 GHMP kinase, C-terminal domain YP_3722 IPR036554 GHMP kinase, C-terminal domain superfamily YP_3722 IPR006204 GHMP kinase N-terminal domain YP_3722 IPR006203 GHMP kinase, ATP-binding, conserved site YP_3722 IPR000870 Homoserine kinase YP_3722 IPR020568 Ribosomal protein S5 domain 2-type fold YP_3722 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_3723 IPR001341 Aspartate kinase YP_3723 IPR019811 Homoserine dehydrogenase, conserved site YP_3723 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding YP_3723 IPR027795 CASTOR, ACT domain YP_3723 IPR002912 ACT domain YP_3723 IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain YP_3723 IPR018042 Aspartate kinase, conserved site YP_3723 IPR001048 Aspartate/glutamate/uridylate kinase YP_3723 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I YP_3723 IPR001342 Homoserine dehydrogenase, catalytic YP_3723 IPR036291 NAD(P)-binding domain superfamily YP_3723 IPR036393 Acetylglutamate kinase-like superfamily YP_3725 IPR039420 Transcriptional regulatory protein WalR-like YP_3725 IPR001789 Signal transduction response regulator, receiver domain YP_3725 IPR016032 Signal transduction response regulator, C-terminal effector YP_3725 IPR011006 CheY-like superfamily YP_3725 IPR001867 OmpR/PhoB-type DNA-binding domain YP_3725 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3726 IPR010292 Uncharacterised protein family CreA YP_3727 IPR029442 GyrI-like small molecule binding domain YP_3727 IPR020449 Transcription regulator HTH, AraC- type YP_3727 IPR009057 Homeobox-like domain superfamily YP_3727 IPR011256 Regulatory factor, effector binding domain superfamily YP_3727 IPR018062 HTH domain AraC-type, conserved site YP_3727 IPR018060 DNA binding HTH domain, AraC-type YP_3727 IPR010499 Bacterial transcription activator, effector binding YP_3728 IPR013078 Histidine phosphatase superfamily, clade-1 YP_3728 IPR023086 Phosphoglycerate mutase, GpmB, probable YP_3728 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site YP_3728 IPR029033 Histidine phosphatase superfamily YP_3729 IPR029001 Inosine triphosphate pyrophosphatase-like YP_3729 IPR002786 Inosine/xanthosine triphosphatase YP_3729 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 YP_3730 IPR038116 TrpR-like superfamily YP_3730 IPR013335 Trp repressor, bacterial YP_3730 IPR010921 Trp repressor/replication initiator YP_3730 IPR000831 Trp repressor YP_3731 IPR008258 Transglycosylase SLT domain 1 YP_3731 IPR023346 Lysozyme-like domain superfamily YP_3731 IPR012289 Lytic transglycosylase, superhelical linker YP_3731 IPR008939 Lytic transglycosylase, superhelical U-shaped YP_3731 IPR000189 Prokaryotic transglycosylase, active site YP_3731 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily YP_3732 IPR023298 P-type ATPase, transmembrane domain superfamily YP_3732 IPR006068 Cation-transporting P-type ATPase, C-terminal YP_3732 IPR004014 Cation-transporting P-type ATPase, N-terminal YP_3732 IPR023299 P-type ATPase, cytoplasmic domain N YP_3732 IPR018303 P-type ATPase, phosphorylation site YP_3732 IPR008250 P-type ATPase, A domain superfamily YP_3732 IPR036412 HAD-like superfamily YP_3732 IPR023214 HAD superfamily YP_3732 IPR001757 P-type ATPase YP_3734 IPR033417 Periplasmic sensor domain CHASE8 YP_3734 IPR000160 GGDEF domain YP_3734 IPR003660 HAMP domain YP_3734 IPR029787 Nucleotide cyclase YP_3735 IPR036737 OmpA-like domain superfamily YP_3735 IPR006665 OmpA-like domain YP_3735 IPR006664 Outer membrane protein, bacterial YP_3736 IPR017871 ABC transporter, conserved site YP_3736 IPR032781 ABC-transporter extension domain YP_3736 IPR003439 ABC transporter-like YP_3736 IPR022374 Energy-dependent translational throttle protein EttA YP_3736 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3736 IPR003593 AAA+ ATPase domain YP_3738 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_3738 IPR001387 Cro/C1-type helix-turn-helix domain YP_3738 IPR004821 Cytidyltransferase-like domain YP_3738 IPR016429 NAD biosynthesis/regulator protein NadR YP_3738 IPR041749 NadR, nicotinamide/nicotinate mononucleotide adenylyltransferase domain YP_3738 IPR006417 Nicotinamide-nucleotide adenylyltransferase YP_3738 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3738 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_3738 IPR038727 NadR/Ttd14, AAA domain YP_3739 IPR003593 AAA+ ATPase domain YP_3739 IPR004504 DNA repair protein RadA YP_3739 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3739 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain YP_3739 IPR020568 Ribosomal protein S5 domain 2-type fold YP_3739 IPR041166 LapB, rubredoxin metal binding domain YP_3739 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_3740 IPR023214 HAD superfamily YP_3740 IPR023190 Phosphoserine phosphatase, domain 2 YP_3740 IPR041449 Phosphoserine phosphatase, N-terminal YP_3740 IPR036412 HAD-like superfamily YP_3741 IPR019305 Uncharacterised protein family Smp YP_3742 IPR035994 Nucleoside phosphorylase superfamily YP_3742 IPR000845 Nucleoside phosphorylase domain YP_3742 IPR018016 Nucleoside phosphorylase, conserved site YP_3742 IPR004402 Purine nucleoside phosphorylase DeoD-type YP_3743 IPR006124 Metalloenzyme YP_3743 IPR010045 Phosphopentomutase YP_3743 IPR017850 Alkaline-phosphatase-like, core domain superfamily YP_3743 IPR024052 Phosphopentomutase DeoB cap domain superfamily YP_3744 IPR017459 Glycosyl transferase family 3, N-terminal domain YP_3744 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily YP_3744 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily YP_3744 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily YP_3744 IPR000312 Glycosyl transferase, family 3 YP_3744 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic YP_3744 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site YP_3744 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase YP_3744 IPR013465 Thymidine phosphorylase YP_3744 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal YP_3745 IPR011343 Deoxyribose-phosphate aldolase YP_3745 IPR013785 Aldolase-type TIM barrel YP_3745 IPR023649 Deoxyribose-phosphate aldolase type II YP_3745 IPR002915 DeoC/FbaB/ lacD aldolase YP_3746 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain YP_3746 IPR002668 Concentrative nucleoside transporter N-terminal domain YP_3746 IPR011657 Concentrative nucleoside transporter C-terminal domain YP_3746 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial YP_3746 IPR008276 Concentrative nucleoside transporter YP_3747 IPR032466 Metal-dependent hydrolase YP_3747 IPR018228 Deoxyribonuclease, TatD-related, conserved site YP_3747 IPR001130 TatD family YP_3748 IPR002641 Patatin-like phospholipase domain YP_3748 IPR037483 YjjU-like YP_3748 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YP_3750 IPR007055 BON domain YP_3750 IPR014004 Transport-associated and nodulation domain, bacteria YP_3751 IPR009000 Translation protein, beta-barrel domain superfamily YP_3751 IPR000795 Transcription factor, GTP-binding domain YP_3751 IPR035647 EF-G domain III/V-like YP_3751 IPR031157 Tr-type G domain, conserved site YP_3751 IPR004161 Translation elongation factor EFTu-like, domain 2 YP_3751 IPR004548 Peptide chain release factor 3 YP_3751 IPR032090 Peptide chain release factor 3, C-terminal YP_3751 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily YP_3751 IPR041732 Peptide chain release factor 3, GTP-binding domain YP_3751 IPR005225 Small GTP-binding protein domain YP_3751 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3752 IPR006464 N-acetyltransferase RimI/Ard1 YP_3752 IPR016181 Acyl-CoA N-acyltransferase YP_3752 IPR000182 GNAT domain YP_3753 IPR036654 DNA polymerase III, psi subunit superfamily YP_3753 IPR018382 DNA polymerase III, psi subunit, subgroup YP_3753 IPR004615 DNA polymerase III, psi subunit YP_3754 IPR007848 Methyltransferase small domain YP_3754 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3754 IPR023543 rRNA small subunit methyltransferase C YP_3754 IPR013675 Methyltransferase small, N-terminal YP_3754 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YP_3755 IPR009885 Protein of unknown function DUF1435 YP_3756 IPR009050 Globin-like superfamily YP_3756 IPR029787 Nucleotide cyclase YP_3756 IPR012292 Globin/Protoglobin YP_3756 IPR039435 Diguanylate cyclase DosC, globin sensor domain YP_3756 IPR000160 GGDEF domain YP_3757 IPR012334 Pectin lyase fold YP_3757 IPR011050 Pectin lyase fold/virulence factor YP_3757 IPR033131 Pectinesterase, Asp active site YP_3757 IPR000070 Pectinesterase, catalytic YP_3760 IPR001036 Acriflavin resistance protein YP_3760 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_3761 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_3761 IPR006143 RND efflux pump, membrane fusion protein YP_3765 IPR011916 Lipopolysaccharide heptosyltransferase III, putative YP_3765 IPR002201 Glycosyl transferase, family 9 YP_3766 IPR018484 Carbohydrate kinase, FGGY, N-terminal YP_3766 IPR018485 Carbohydrate kinase, FGGY, C-terminal YP_3766 IPR000577 Carbohydrate kinase, FGGY YP_3766 IPR033676 Autoinducer-2 kinase YP_3767 IPR012318 Crp-type HTH domain YP_3767 IPR037171 NagB/RpiA transferase-like YP_3767 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3767 IPR007324 Sugar-binding domain, putative YP_3769 IPR030281 Autoinducer 2 import ATP-binding protein LsrA YP_3769 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3769 IPR003593 AAA+ ATPase domain YP_3769 IPR017871 ABC transporter, conserved site YP_3769 IPR003439 ABC transporter-like YP_3770 IPR001851 ABC transporter, permease YP_3771 IPR001851 ABC transporter, permease YP_3772 IPR028082 Periplasmic binding protein-like I YP_3772 IPR030159 Autoinducer 2 ABC transporter, substrate-binding protein LsrB YP_3772 IPR025997 Periplasmic binding protein YP_3773 IPR041720 Aldolase FbaB-like, archaeal-type YP_3773 IPR033673 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase YP_3773 IPR002915 DeoC/FbaB/ lacD aldolase YP_3773 IPR013785 Aldolase-type TIM barrel YP_3774 IPR033672 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase YP_3774 IPR011008 Dimeric alpha-beta barrel YP_3774 IPR007138 Antibiotic biosynthesis monooxygenase domain YP_3775 IPR019637 Protein of unknown function DUF2501 YP_3776 IPR000032 Phosphocarrier protein HPr-like YP_3776 IPR035895 HPr-like superfamily YP_3776 IPR008279 PEP-utilising enzyme, mobile domain YP_3776 IPR018274 PEP-utilising enzyme, active site YP_3776 IPR000121 PEP-utilising enzyme, C-terminal YP_3776 IPR036637 Phosphohistidine domain superfamily YP_3776 IPR023151 PEP-utilising enzyme, conserved site YP_3776 IPR002178 PTS EIIA type-2 domain YP_3776 IPR040442 Pyruvate kinase-like domain superfamily YP_3776 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YP_3776 IPR016152 Phosphotransferase/anion transporter YP_3776 IPR036618 PtsI, HPr-binding domain superfamily YP_3776 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YP_3776 IPR008731 Phosphotransferase system, enzyme I N-terminal YP_3776 IPR006318 Phosphotransferase system, enzyme I-like YP_3777 IPR006327 Phosphotransferase system, fructose IIC component YP_3777 IPR013014 Phosphotransferase system, EIIC component, type 2 YP_3778 IPR013011 Phosphotransferase system, EIIB component, type 2 YP_3778 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YP_3778 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YP_3778 IPR036095 PTS system IIB component-like superfamily YP_3779 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YP_3779 IPR013011 Phosphotransferase system, EIIB component, type 2 YP_3779 IPR036095 PTS system IIB component-like superfamily YP_3779 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YP_3780 IPR018062 HTH domain AraC-type, conserved site YP_3780 IPR020449 Transcription regulator HTH, AraC- type YP_3780 IPR009057 Homeobox-like domain superfamily YP_3780 IPR018060 DNA binding HTH domain, AraC-type YP_3782 IPR010295 Protein of unknown function DUF898 YP_3790 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3790 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site YP_3790 IPR002941 DNA methylase N-4/N-6 YP_3794 IPR003593 AAA+ ATPase domain YP_3794 IPR011704 ATPase, dynein-related, AAA domain YP_3794 IPR021961 Protein of unknown function DUF3578 YP_3794 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3795 IPR006120 Resolvase, HTH domain YP_3795 IPR017894 HTH domain, IS21 transposase-type YP_3795 IPR012337 Ribonuclease H-like superfamily YP_3795 IPR001584 Integrase, catalytic core YP_3795 IPR036397 Ribonuclease H superfamily YP_3796 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3796 IPR002611 IstB-like ATP-binding protein YP_3796 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_3796 IPR003593 AAA+ ATPase domain YP_3796 IPR001270 ClpA/B family YP_3798 IPR036390 Winged helix DNA-binding domain superfamily YP_3798 IPR000847 Transcription regulator HTH, LysR YP_3798 IPR005119 LysR, substrate-binding YP_3798 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3799 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain YP_3799 IPR003829 Pirin, N-terminal domain YP_3799 IPR012093 Pirin YP_3799 IPR011051 RmlC-like cupin domain superfamily YP_3799 IPR014710 RmlC-like jelly roll fold YP_3801 IPR035996 Tetrapyrrole methylase superfamily YP_3801 IPR014776 Tetrapyrrole methylase, subdomain 2 YP_3801 IPR008189 rRNA small subunit methyltransferase I YP_3801 IPR018063 SAM-dependent methyltransferase RsmI, conserved site YP_3801 IPR000878 Tetrapyrrole methylase YP_3801 IPR014777 Tetrapyrrole methylase, subdomain 1 YP_3802 IPR011990 Tetratricopeptide-like helical domain superfamily YP_3802 IPR028082 Periplasmic binding protein-like I YP_3802 IPR007443 Penicillin-binding protein activator LpoA YP_3803 IPR011856 tRNA endonuclease-like domain superfamily YP_3803 IPR003509 Uncharacterised protein family UPF0102 YP_3803 IPR011335 Restriction endonuclease type II-like YP_3804 IPR023070 DnaA initiator-associating protein YP_3804 IPR001347 Sugar isomerase (SIS) YP_3804 IPR035461 GmhA/DiaA YP_3805 IPR007055 BON domain YP_3805 IPR014004 Transport-associated and nodulation domain, bacteria YP_3806 IPR011812 Biosynthetic peptidoglycan transglycosylase YP_3806 IPR036950 Penicillin binding protein transglycosylase domain YP_3806 IPR023346 Lysozyme-like domain superfamily YP_3806 IPR001264 Glycosyl transferase, family 51 YP_3807 IPR029062 Class I glutamine amidotransferase-like YP_3807 IPR026041 Glyoxalase ElbB YP_3809 IPR005467 Histidine kinase domain YP_3809 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YP_3809 IPR011006 CheY-like superfamily YP_3809 IPR003594 Histidine kinase/HSP90-like ATPase YP_3809 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YP_3809 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily YP_3809 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3809 IPR040642 Histidine kinase receptor ArcB, transmembrane domain YP_3809 IPR036641 HPT domain superfamily YP_3809 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YP_3809 IPR000014 PAS domain YP_3809 IPR000700 PAS-associated, C-terminal YP_3809 IPR035965 PAS domain superfamily YP_3809 IPR001789 Signal transduction response regulator, receiver domain YP_3809 IPR013767 PAS fold YP_3809 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB YP_3809 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YP_3810 IPR039661 ELP3/YhcC YP_3810 IPR006638 Elp3/MiaB/NifB YP_3810 IPR032432 Radical SAM, C-terminal extension YP_3810 IPR023404 Radical SAM, alpha/beta horseshoe YP_3810 IPR007197 Radical SAM YP_3810 IPR005911 Protein YhcC-like YP_3811 IPR002489 Glutamate synthase, alpha subunit, C-terminal YP_3811 IPR017932 Glutamine amidotransferase type 2 domain YP_3811 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily YP_3811 IPR006982 Glutamate synthase, central-N YP_3811 IPR002932 Glutamate synthase domain YP_3811 IPR029055 Nucleophile aminohydrolases, N-terminal YP_3811 IPR013785 Aldolase-type TIM barrel YP_3812 IPR009051 Alpha-helical ferredoxin YP_3812 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_3812 IPR028261 Dihydroprymidine dehydrogenase domain II YP_3812 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3812 IPR023753 FAD/NAD(P)-binding domain YP_3812 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 YP_3814 IPR036760 SspB-like superfamily YP_3814 IPR007481 Stringent starvation protein B YP_3815 IPR034341 Stringent starvation protein A, N-terminal YP_3815 IPR004046 Glutathione S-transferase, C-terminal YP_3815 IPR010987 Glutathione S-transferase, C-terminal-like YP_3815 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YP_3815 IPR040079 Glutathione Transferase family YP_3815 IPR004045 Glutathione S-transferase, N-terminal YP_3815 IPR036249 Thioredoxin-like superfamily YP_3817 IPR000754 Ribosomal protein S9 YP_3817 IPR020574 Ribosomal protein S9, conserved site YP_3817 IPR023035 Ribosomal protein S9, bacterial/plastid YP_3817 IPR020568 Ribosomal protein S5 domain 2-type fold YP_3817 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_3818 IPR036899 Ribosomal protein L13 superfamily YP_3818 IPR023563 Ribosomal protein L13, conserved site YP_3818 IPR005823 Ribosomal protein L13, bacterial-type YP_3818 IPR005822 Ribosomal protein L13 YP_3819 IPR030870 Cell division protein ZapE YP_3819 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3819 IPR005654 ATPase, AFG1-like YP_3820 IPR009386 Protein of unknown function DUF1043 YP_3821 IPR001940 Peptidase S1C YP_3821 IPR009003 Peptidase S1, PA clan YP_3821 IPR011782 Peptidase S1C, Do YP_3821 IPR036034 PDZ superfamily YP_3821 IPR001478 PDZ domain YP_3822 IPR002686 Transposase IS200-like YP_3822 IPR036515 Transposase IS200-like superfamily YP_3823 IPR009003 Peptidase S1, PA clan YP_3823 IPR001940 Peptidase S1C YP_3823 IPR036034 PDZ superfamily YP_3823 IPR011783 Peptidase S1C, DegS YP_3823 IPR001478 PDZ domain YP_3824 IPR001986 Enolpyruvate transferase domain YP_3824 IPR036968 Enolpyruvate transferase domain superfamily YP_3824 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YP_3824 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_3825 IPR036065 BolA-like superfamily YP_3825 IPR002634 BolA protein YP_3826 IPR036513 STAS domain superfamily YP_3826 IPR002645 STAS domain YP_3827 IPR042245 Tgt2/MlaC superfamily YP_3827 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC YP_3828 IPR003399 Mce/MlaD YP_3828 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD YP_3829 IPR003453 ABC transport permease subunit MlaE, Proteobacteria YP_3829 IPR030802 ABC transporter permease MalE YP_3830 IPR003593 AAA+ ATPase domain YP_3830 IPR017871 ABC transporter, conserved site YP_3830 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl YP_3830 IPR003439 ABC transporter-like YP_3830 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3831 IPR004481 Sodium/potassium/calcium exchanger YP_3831 IPR004837 Sodium/calcium exchanger membrane region YP_3832 IPR035474 KpsF-like, SIS domain YP_3832 IPR001347 Sugar isomerase (SIS) YP_3832 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type YP_3832 IPR000644 CBS domain YP_3833 IPR010023 KdsC family YP_3833 IPR023214 HAD superfamily YP_3833 IPR036412 HAD-like superfamily YP_3834 IPR026265 Lipopolysaccharide export system protein LptC YP_3834 IPR010664 Lipopolysaccharide assembly, LptC-related YP_3835 IPR014340 Lipopolysaccharide export system protein LptA YP_3835 IPR005653 Organic solvent tolerance-like, N-terminal YP_3836 IPR030921 LPS export ABC transporter, ATP-binding protein LptB YP_3836 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3836 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal YP_3836 IPR017871 ABC transporter, conserved site YP_3836 IPR003439 ABC transporter-like YP_3836 IPR003593 AAA+ ATPase domain YP_3837 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily YP_3837 IPR000394 RNA polymerase sigma factor 54 YP_3837 IPR007046 RNA polymerase sigma factor 54, core-binding domain YP_3837 IPR007634 RNA polymerase sigma factor 54, DNA-binding YP_3839 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN YP_3839 IPR016152 Phosphotransferase/anion transporter YP_3839 IPR002178 PTS EIIA type-2 domain YP_3840 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3840 IPR005337 RapZ-like family YP_3841 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YP_3841 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YP_3841 IPR000032 Phosphocarrier protein HPr-like YP_3841 IPR035895 HPr-like superfamily YP_3842 IPR006130 Aspartate/ornithine carbamoyltransferase YP_3842 IPR002082 Aspartate carbamoyltransferase YP_3842 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YP_3842 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily YP_3842 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YP_3843 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily YP_3843 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal YP_3843 IPR002801 Aspartate transcarbamylase regulatory subunit YP_3843 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal YP_3843 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily YP_3844 IPR006175 YjgF/YER057c/UK114 family YP_3844 IPR006056 RidA family YP_3844 IPR035959 RutC-like superfamily YP_3844 IPR019897 RidA, conserved site YP_3846 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YP_3846 IPR028082 Periplasmic binding protein-like I YP_3846 IPR012771 Trehalose operon repressor YP_3846 IPR000843 LacI-type HTH domain YP_3847 IPR036878 Glucose permease domain IIB YP_3847 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YP_3847 IPR011296 Phosphotransferase system, trehalose-specific IIBC component YP_3847 IPR013013 Phosphotransferase system, EIIC component, type 1 YP_3847 IPR001996 Phosphotransferase system, IIB component, type 1 YP_3847 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component YP_3847 IPR003352 Phosphotransferase system, EIIC YP_3848 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) YP_3848 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YP_3848 IPR013780 Glycosyl hydrolase, all-beta YP_3848 IPR017853 Glycoside hydrolase superfamily YP_3848 IPR012769 Trehalose-6-phosphate hydrolase YP_3849 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily YP_3849 IPR028625 Regulator of nucleoside diphosphate kinase YP_3849 IPR023459 Transcription elongation factor GreA/GreB family YP_3849 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YP_3849 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain YP_3850 IPR009155 Cytochrome b562 YP_3850 IPR010980 Cytochrome c/b562 YP_3852 IPR002510 Metalloprotease TldD/PmbA YP_3852 IPR036059 Metalloprotease TldD/PmbA superfamily YP_3852 IPR035068 Metalloprotease TldD/PmbA, N-terminal YP_3853 IPR023153 PSPTO4464-like domain superfamily YP_3853 IPR006839 Ribosome-associated, YjgA YP_3854 IPR035905 Barstar-like superfamily YP_3854 IPR000468 Barstar (barnase inhibitor) YP_3857 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein YP_3857 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB YP_3858 IPR006143 RND efflux pump, membrane fusion protein YP_3858 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA YP_3858 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YP_3859 IPR012451 Protein of unknown function DUF1656 YP_3861 IPR005119 LysR, substrate-binding YP_3861 IPR000847 Transcription regulator HTH, LysR YP_3861 IPR036390 Winged helix DNA-binding domain superfamily YP_3861 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3862 IPR036390 Winged helix DNA-binding domain superfamily YP_3862 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3862 IPR000847 Transcription regulator HTH, LysR YP_3862 IPR005119 LysR, substrate-binding YP_3865 IPR041079 Neuraminidase-like domain YP_3865 IPR040840 Tc toxin complex TcA, C-terminal TcB-binding domain YP_3866 IPR022044 Insecticide toxin TcdB middle/C-terminal YP_3866 IPR003284 Salmonella virulence plasmid 65kDa B protein YP_3866 IPR022045 Insecticide toxin TcdB middle/N-terminal YP_3871 IPR041508 Toxin complex C-like repeat YP_3871 IPR022385 Rhs repeat-associated core YP_3871 IPR011324 Cytotoxic necrotizing factor-like, catalytic YP_3871 IPR037040 Cytotoxic necrotizing factor, Rho-activating domain superfamily YP_3871 IPR008430 Cytotoxic necrotizing factor, Rho-activating domain YP_3872 IPR022385 Rhs repeat-associated core YP_3872 IPR041508 Toxin complex C-like repeat YP_3872 IPR025968 YwqJ-like deaminase YP_3874 IPR002510 Metalloprotease TldD/PmbA YP_3874 IPR025502 TldD YP_3874 IPR036059 Metalloprotease TldD/PmbA superfamily YP_3874 IPR035068 Metalloprotease TldD/PmbA, N-terminal YP_3875 IPR036526 Carbon-nitrogen hydrolase superfamily YP_3875 IPR001110 Uncharacterised protein family UPF0012, conserved site YP_3875 IPR003010 Carbon-nitrogen hydrolase YP_3876 IPR025263 Domain of unknown function DUF3971 YP_3876 IPR011836 Conserved hypothetical protein CHP02099 YP_3876 IPR032712 AsmA-like, C-terminal YP_3877 IPR022967 RNA-binding domain, S1 YP_3877 IPR003029 S1 domain YP_3877 IPR004659 Ribonuclease E/G YP_3877 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G YP_3877 IPR012340 Nucleic acid-binding, OB-fold YP_3878 IPR029001 Inosine triphosphate pyrophosphatase-like YP_3878 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein YP_3879 IPR026034 Cell shape-determining protein MreD, proteobacterial type YP_3879 IPR007227 Cell shape-determining protein MreD YP_3880 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 YP_3880 IPR007221 Rod shape-determining protein MreC YP_3880 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 YP_3881 IPR004753 Cell shape determining protein MreB YP_3882 IPR029787 Nucleotide cyclase YP_3882 IPR000160 GGDEF domain YP_3882 IPR035919 EAL domain superfamily YP_3882 IPR001633 EAL domain YP_3882 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 YP_3883 IPR014188 Acrylyl-CoA reductase AcuI YP_3883 IPR011032 GroES-like superfamily YP_3883 IPR036291 NAD(P)-binding domain superfamily YP_3883 IPR013154 Alcohol dehydrogenase, N-terminal YP_3883 IPR013149 Alcohol dehydrogenase, C-terminal YP_3883 IPR020843 Polyketide synthase, enoylreductase domain YP_3884 IPR000572 Oxidoreductase, molybdopterin-binding domain YP_3884 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP YP_3884 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily YP_3885 IPR013130 Ferric reductase transmembrane component-like domain YP_3885 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ YP_3886 IPR001874 Dehydroquinase, class II YP_3886 IPR036441 Dehydroquinase, class II superfamily YP_3886 IPR018509 Dehydroquinase, class II, conserved site YP_3887 IPR001249 Acetyl-CoA biotin carboxyl carrier YP_3887 IPR000089 Biotin/lipoyl attachment YP_3887 IPR001882 Biotin-binding site YP_3887 IPR011053 Single hybrid motif YP_3888 IPR013815 ATP-grasp fold, subdomain 1 YP_3888 IPR011054 Rudiment single hybrid motif YP_3888 IPR011764 Biotin carboxylation domain YP_3888 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain YP_3888 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase YP_3888 IPR011761 ATP-grasp fold YP_3888 IPR005482 Biotin carboxylase, C-terminal YP_3888 IPR016185 Pre-ATP-grasp domain superfamily YP_3888 IPR005481 Biotin carboxylase-like, N-terminal domain YP_3889 IPR010398 Protein of unknown function DUF997 YP_3890 IPR011849 Sodium/pantothenate symporter YP_3890 IPR018212 Sodium/solute symporter, conserved site YP_3890 IPR038377 Sodium/glucose symporter superfamily YP_3890 IPR001734 Sodium/solute symporter YP_3891 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3891 IPR004498 Ribosomal protein L11 methyltransferase YP_3892 IPR013785 Aldolase-type TIM barrel YP_3892 IPR035587 DUS-like, FMN-binding domain YP_3892 IPR032887 tRNA-dihydrouridine synthase B YP_3892 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal YP_3892 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 YP_3892 IPR001269 tRNA-dihydrouridine synthase YP_3892 IPR018517 tRNA-dihydrouridine synthase, conserved site YP_3893 IPR002197 DNA binding HTH domain, Fis-type YP_3893 IPR009057 Homeobox-like domain superfamily YP_3893 IPR005412 DNA-binding protein Fis YP_3897 IPR005829 Sugar transporter, conserved site YP_3897 IPR004736 MFS transporter, metabolite:H symporter YP_3897 IPR036259 MFS transporter superfamily YP_3897 IPR011701 Major facilitator superfamily YP_3897 IPR020846 Major facilitator superfamily domain YP_3898 IPR012788 4-carboxymuconolactone decarboxylase YP_3898 IPR029032 AhpD-like YP_3898 IPR003779 Carboxymuconolactone decarboxylase-like YP_3899 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YP_3899 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding YP_3899 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain YP_3899 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YP_3899 IPR036291 NAD(P)-binding domain superfamily YP_3899 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site YP_3899 IPR015815 3-hydroxyisobutyrate dehydrogenase-related YP_3900 IPR001279 Metallo-beta-lactamase YP_3900 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_3901 IPR008816 Glycine zipper 2TM domain YP_3903 IPR012340 Nucleic acid-binding, OB-fold YP_3903 IPR019844 Cold-shock (CSD) domain YP_3903 IPR012156 Cold shock, CspA YP_3903 IPR011129 Cold shock domain YP_3903 IPR002059 Cold-shock protein, DNA-binding YP_3904 IPR002059 Cold-shock protein, DNA-binding YP_3904 IPR012340 Nucleic acid-binding, OB-fold YP_3904 IPR019844 Cold-shock (CSD) domain YP_3904 IPR011129 Cold shock domain YP_3904 IPR012156 Cold shock, CspA YP_3905 IPR002686 Transposase IS200-like YP_3905 IPR036515 Transposase IS200-like superfamily YP_3908 IPR036249 Thioredoxin-like superfamily YP_3908 IPR004045 Glutathione S-transferase, N-terminal YP_3908 IPR010987 Glutathione S-transferase, C-terminal-like YP_3908 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YP_3908 IPR040079 Glutathione Transferase family YP_3909 IPR000644 CBS domain YP_3909 IPR001347 Sugar isomerase (SIS) YP_3909 IPR035474 KpsF-like, SIS domain YP_3909 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type YP_3910 IPR018484 Carbohydrate kinase, FGGY, N-terminal YP_3910 IPR005929 Ribulokinase YP_3910 IPR000577 Carbohydrate kinase, FGGY YP_3910 IPR018485 Carbohydrate kinase, FGGY, C-terminal YP_3912 IPR001851 ABC transporter, permease YP_3913 IPR003593 AAA+ ATPase domain YP_3913 IPR003439 ABC transporter-like YP_3913 IPR017871 ABC transporter, conserved site YP_3913 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3913 IPR015861 ABC transporter, ribose import, RbsA YP_3915 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YP_3915 IPR004960 Bacterial lipid A biosynthesis acyltransferase YP_3915 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP YP_3917 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria YP_3917 IPR006153 Cation/H+ exchanger YP_3917 IPR018422 Cation/H+ exchanger, CPA1 family YP_3917 IPR038770 Sodium/solute symporter superfamily YP_3918 IPR006043 Xanthine/uracil/vitamin C permease YP_3919 IPR026262 Antitoxin DinJ YP_3919 IPR013321 Arc-type ribbon-helix-helix YP_3919 IPR007337 RelB antitoxin/Antitoxin DinJ YP_3920 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3920 IPR017871 ABC transporter, conserved site YP_3920 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB YP_3920 IPR003593 AAA+ ATPase domain YP_3920 IPR003439 ABC transporter-like YP_3921 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_3921 IPR035906 MetI-like superfamily YP_3922 IPR036661 Luciferase-like domain superfamily YP_3922 IPR011251 Luciferase-like domain YP_3922 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent YP_3924 IPR020048 NADPH-dependent FMN reductase, SsuE YP_3924 IPR005025 NADPH-dependent FMN reductase-like YP_3924 IPR029039 Flavoprotein-like superfamily YP_3926 IPR011611 Carbohydrate kinase PfkB YP_3926 IPR029056 Ribokinase-like YP_3926 IPR002139 Ribokinase/fructokinase YP_3926 IPR011877 Ribokinase YP_3926 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YP_3927 IPR023064 D-ribose pyranase YP_3927 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU YP_3927 IPR023750 RbsD-like superfamily YP_3928 IPR009057 Homeobox-like domain superfamily YP_3928 IPR003313 AraC-type arabinose-binding/dimerisation domain YP_3928 IPR018060 DNA binding HTH domain, AraC-type YP_3928 IPR014710 RmlC-like jelly roll fold YP_3928 IPR011051 RmlC-like cupin domain superfamily YP_3929 IPR000683 Oxidoreductase, N-terminal YP_3929 IPR036291 NAD(P)-binding domain superfamily YP_3929 IPR004104 Oxidoreductase, C-terminal YP_3931 IPR001207 Transposase, mutator type YP_3933 IPR031325 RHS repeat YP_3933 IPR006530 YD repeat YP_3933 IPR022385 Rhs repeat-associated core YP_3933 IPR001826 RHS protein YP_3935 IPR006531 Gp5 N-terminal YP_3935 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YP_3935 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YP_3935 IPR037026 Vgr protein, OB-fold domain superfamily YP_3941 IPR001826 RHS protein YP_3941 IPR006530 YD repeat YP_3941 IPR025479 Domain of unknown function DUF4329 YP_3941 IPR022385 Rhs repeat-associated core YP_3941 IPR031325 RHS repeat YP_3944 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YP_3944 IPR006531 Gp5 N-terminal YP_3944 IPR037026 Vgr protein, OB-fold domain superfamily YP_3944 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YP_3951 IPR003593 AAA+ ATPase domain YP_3951 IPR036628 Clp, N-terminal domain superfamily YP_3951 IPR017729 Type VI secretion system, ATPase ClpV1 YP_3951 IPR001270 ClpA/B family YP_3951 IPR018368 ClpA/B, conserved site 1 YP_3951 IPR041546 ClpA/ClpB, AAA lid domain YP_3951 IPR019489 Clp ATPase, C-terminal YP_3951 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3951 IPR003959 ATPase, AAA-type, core YP_3951 IPR004176 Clp, N-terminal YP_3959 IPR036397 Ribonuclease H superfamily YP_3959 IPR012337 Ribonuclease H-like superfamily YP_3959 IPR001584 Integrase, catalytic core YP_3959 IPR038965 Transposase InsF-like YP_3959 IPR025948 HTH-like domain YP_3960 IPR020846 Major facilitator superfamily domain YP_3960 IPR011701 Major facilitator superfamily YP_3960 IPR036259 MFS transporter superfamily YP_3966 IPR015424 Pyridoxal phosphate-dependent transferase YP_3966 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_3966 IPR018319 L-seryl-tRNA selenium transferase-like YP_3966 IPR004534 L-seryl-tRNA(Sec) selenium transferase YP_3966 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain YP_3967 IPR024064 FdhE-like superfamily YP_3967 IPR006452 Formate dehydrogenase accessory protein YP_3968 IPR006471 Formate dehydrogenase, gamma subunit YP_3968 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YP_3968 IPR016174 Di-haem cytochrome, transmembrane YP_3969 IPR014603 Formate dehydrogenase iron-sulphur subunit YP_3969 IPR038384 Formate dehydrogenase, C-terminal domain superfamily YP_3969 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria YP_3969 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_3969 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_3969 IPR015246 Formate dehydrogenase, transmembrane YP_3971 IPR003786 Sulfur carrier protein FdhD YP_3971 IPR016193 Cytidine deaminase-like YP_3972 IPR019833 Manganese/iron superoxide dismutase, binding site YP_3972 IPR019831 Manganese/iron superoxide dismutase, N-terminal YP_3972 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily YP_3972 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily YP_3972 IPR001189 Manganese/iron superoxide dismutase YP_3972 IPR019832 Manganese/iron superoxide dismutase, C-terminal YP_3973 IPR004090 Chemotaxis methyl-accepting receptor YP_3973 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YP_3973 IPR003660 HAMP domain YP_3973 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YP_3973 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YP_3973 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YP_3976 IPR021230 Protein of unknown function DUF2810 YP_3977 IPR007761 Mannitol repressor MtlR-like YP_3977 IPR038026 MtlR-like superfamily YP_3978 IPR036291 NAD(P)-binding domain superfamily YP_3978 IPR013131 Mannitol dehydrogenase, N-terminal YP_3978 IPR023027 Mannitol dehydrogenase, conserved site YP_3978 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YP_3978 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YP_3978 IPR000669 Mannitol dehydrogenase YP_3978 IPR013118 Mannitol dehydrogenase, C-terminal YP_3978 IPR023028 Mannitol-1-phosphate 5-dehydrogenase YP_3979 IPR002178 PTS EIIA type-2 domain YP_3979 IPR016152 Phosphotransferase/anion transporter YP_3979 IPR036095 PTS system IIB component-like superfamily YP_3979 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YP_3979 IPR003352 Phosphotransferase system, EIIC YP_3979 IPR013014 Phosphotransferase system, EIIC component, type 2 YP_3979 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC YP_3979 IPR029503 Phosphotransferase system EIIB component, mannitol-specific YP_3979 IPR013011 Phosphotransferase system, EIIB component, type 2 YP_3980 IPR021413 Protein of unknown function DUF3053 YP_3981 IPR015944 Glycine-tRNA ligase, beta subunit YP_3981 IPR008909 DALR anticodon binding YP_3981 IPR006194 Glycine-tRNA synthetase, heterodimeric YP_3982 IPR002310 Glycine-tRNA ligase, alpha subunit YP_3982 IPR006194 Glycine-tRNA synthetase, heterodimeric YP_3984 IPR005019 Methyladenine glycosylase YP_3984 IPR011257 DNA glycosylase YP_3984 IPR004597 DNA-3-methyladenine glycosylase I YP_3986 IPR006664 Outer membrane protein, bacterial YP_3986 IPR006690 Outer membrane protein, OmpA-like, conserved site YP_3986 IPR006665 OmpA-like domain YP_3986 IPR039567 Glycine zipper domain YP_3986 IPR036737 OmpA-like domain superfamily YP_3988 IPR036291 NAD(P)-binding domain superfamily YP_3988 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YP_3988 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YP_3988 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YP_3988 IPR023756 Glyoxylate/hydroxypyruvate reductase B YP_3988 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_3989 IPR017853 Glycoside hydrolase superfamily YP_3989 IPR014635 Alpha-amylase, MalS type YP_3989 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YP_3991 IPR015424 Pyridoxal phosphate-dependent transferase YP_3991 IPR004839 Aminotransferase, class I/classII YP_3991 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YP_3992 IPR006512 YidE/YbjL duplication YP_3992 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YP_3992 IPR023018 Transport protein YidE, putative YP_3992 IPR006037 Regulator of K+ conductance, C-terminal YP_3993 IPR008978 HSP20-like chaperone YP_3993 IPR002068 Alpha crystallin/Hsp20 domain YP_3993 IPR022848 Small heat shock protein IbpB YP_3993 IPR037913 Small heat shock protein IbpA/IbpB, ACD domain YP_3994 IPR023728 Small heat shock protein IbpA YP_3994 IPR008978 HSP20-like chaperone YP_3994 IPR002068 Alpha crystallin/Hsp20 domain YP_3994 IPR037913 Small heat shock protein IbpA/IbpB, ACD domain YP_3995 IPR010780 Protein of unknown function DUF1375 YP_3997 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YP_3997 IPR005789 Threonine dehydratase, catabolic YP_3997 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_3997 IPR001926 Pyridoxal-phosphate dependent enzyme YP_3997 IPR002912 ACT domain YP_3998 IPR023401 Ornithine cyclodeaminase, N-terminal YP_3998 IPR014334 Ectoine utilization protein EutC YP_3998 IPR036291 NAD(P)-binding domain superfamily YP_3998 IPR003462 Ornithine cyclodeaminase/mu-crystallin YP_4000 IPR036397 Ribonuclease H superfamily YP_4000 IPR012337 Ribonuclease H-like superfamily YP_4000 IPR025948 HTH-like domain YP_4000 IPR001584 Integrase, catalytic core YP_4000 IPR038965 Transposase InsF-like YP_4001 IPR036412 HAD-like superfamily YP_4001 IPR006379 HAD-superfamily hydrolase, subfamily IIB YP_4001 IPR023214 HAD superfamily YP_4001 IPR000150 Cof family YP_4002 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal YP_4002 IPR034160 DNA gyrase subunit B, TOPRIM domain YP_4002 IPR006171 TOPRIM domain YP_4002 IPR018522 DNA topoisomerase, type IIA, conserved site YP_4002 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 YP_4002 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YP_4002 IPR011557 DNA gyrase, subunit B YP_4002 IPR002288 DNA gyrase B subunit, C-terminal YP_4002 IPR003594 Histidine kinase/HSP90-like ATPase YP_4002 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_4002 IPR041423 DNA gyrase subunit B insert domain YP_4002 IPR020568 Ribosomal protein S5 domain 2-type fold YP_4002 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_4002 IPR001241 DNA topoisomerase, type IIA YP_4003 IPR042174 DNA-binding RecF, domain 2 YP_4003 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_4003 IPR018078 DNA-binding, RecF, conserved site YP_4003 IPR001238 DNA-binding, RecF YP_4003 IPR003395 RecF/RecN/SMC, N-terminal YP_4004 IPR022637 DNA polymerase III, beta sliding clamp, central YP_4004 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal YP_4004 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal YP_4004 IPR001001 DNA polymerase III, beta sliding clamp YP_4005 IPR024633 DnaA N-terminal domain YP_4005 IPR013159 Chromosomal replication initiator, DnaA C-terminal YP_4005 IPR018312 Chromosomal replication control, initiator DnaA, conserved site YP_4005 IPR010921 Trp repressor/replication initiator YP_4005 IPR013317 Chromosomal replication initiator protein DnaA YP_4005 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_4005 IPR020591 Chromosomal replication control, initiator DnaA-like YP_4005 IPR038454 DnaA, N-terminal domain superfamily YP_4005 IPR003593 AAA+ ATPase domain YP_4005 IPR001957 Chromosomal replication control, initiator DnaA YP_4007 IPR020939 Ribosomal protein L34, conserved site YP_4007 IPR000271 Ribosomal protein L34 YP_4008 IPR020539 Ribonuclease P, conserved site YP_4008 IPR000100 Ribonuclease P YP_4008 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_4008 IPR020568 Ribosomal protein S5 domain 2-type fold YP_4009 IPR038221 YidC, periplasmic domain superfamily YP_4009 IPR038210 Membrane insertase YidC, periplasmic domain YP_4009 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 YP_4009 IPR028053 Membrane insertase YidC, N-terminal YP_4009 IPR028055 Membrane insertase YidC/Oxa1, C-terminal YP_4009 IPR019998 Membrane insertase YidC YP_4010 IPR025867 MnmE, helical domain YP_4010 IPR004520 tRNA modification GTPase MnmE YP_4010 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 YP_4010 IPR005225 Small GTP-binding protein domain YP_4010 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_4010 IPR027368 tRNA modification GTPase MnmE domain 2 YP_4010 IPR006073 GTP binding domain YP_4010 IPR031168 TrmE-type guanine nucleotide-binding domain YP_4010 IPR018948 GTP-binding protein TrmE, N-terminal YP_4011 IPR010758 Trans-2-enoyl-CoA reductase YP_4011 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative YP_4011 IPR024906 Enoyl reductase FAD binding domain YP_4014 IPR006043 Xanthine/uracil/vitamin C permease YP_4014 IPR026033 Azaguanine-like transporters YP_4015 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YP_4015 IPR023214 HAD superfamily YP_4015 IPR041492 Haloacid dehalogenase-like hydrolase YP_4015 IPR006439 HAD hydrolase, subfamily IA YP_4015 IPR036412 HAD-like superfamily YP_4016 IPR035906 MetI-like superfamily YP_4016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_4016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YP_4017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YP_4017 IPR035906 MetI-like superfamily YP_4017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_4018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_4018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YP_4018 IPR018313 Solute-binding protein family 3, conserved site YP_4018 IPR001320 Ionotropic glutamate receptor YP_4020 IPR038078 PhoU-like domain superfamily YP_4020 IPR026022 PhoU domain YP_4020 IPR028366 Phosphate transport system protein PhoU YP_4021 IPR005670 Phosphate transport system permease protein 1 YP_4021 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_4021 IPR015850 ABC transporter, phosphate import, PstB YP_4021 IPR017871 ABC transporter, conserved site YP_4021 IPR003593 AAA+ ATPase domain YP_4021 IPR003439 ABC transporter-like YP_4022 IPR005672 Phosphate transport system permease protein PstA YP_4022 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_4022 IPR035906 MetI-like superfamily YP_4023 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YP_4023 IPR035906 MetI-like superfamily YP_4023 IPR011864 Phosphate ABC transporter, permease protein PstC YP_4024 IPR024370 PBP domain YP_4024 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS YP_4025 IPR035490 GlmS/FrlB, SIS domain 2 YP_4025 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising YP_4025 IPR017932 Glutamine amidotransferase type 2 domain YP_4025 IPR035466 GlmS/AgaS, SIS domain 1 YP_4025 IPR029055 Nucleophile aminohydrolases, N-terminal YP_4025 IPR001347 Sugar isomerase (SIS) YP_4026 IPR011004 Trimeric LpxA-like superfamily YP_4026 IPR029044 Nucleotide-diphospho-sugar transferases YP_4026 IPR025877 MobA-like NTP transferase YP_4026 IPR018357 Hexapeptide transferase, conserved site YP_4026 IPR001451 Hexapeptide repeat YP_4026 IPR038009 GlmU, C-terminal LbH domain YP_4026 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase YP_4027 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain YP_4027 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal YP_4027 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal YP_4027 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily YP_4027 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit YP_4028 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain YP_4028 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_4028 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal YP_4028 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YP_4028 IPR003593 AAA+ ATPase domain YP_4028 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YP_4028 IPR005722 ATP synthase, F1 complex, beta subunit YP_4028 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily YP_4029 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site YP_4029 IPR000131 ATP synthase, F1 complex, gamma subunit YP_4029 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily YP_4030 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily YP_4030 IPR000793 ATP synthase, alpha subunit, C-terminal YP_4030 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily YP_4030 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain YP_4030 IPR005294 ATP synthase, F1 complex, alpha subunit YP_4030 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YP_4030 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain YP_4030 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YP_4030 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily YP_4030 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_4031 IPR000711 ATPase, OSCP/delta subunit YP_4031 IPR020781 ATPase, OSCP/delta subunit, conserved site YP_4031 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily YP_4032 IPR005864 ATP synthase, F0 complex, subunit b, bacterial YP_4032 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast YP_4032 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily YP_4033 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast YP_4033 IPR002379 V-ATPase proteolipid subunit C-like domain YP_4033 IPR035921 F/V-ATP synthase subunit C superfamily YP_4033 IPR000454 ATP synthase, F0 complex, subunit C YP_4033 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site YP_4033 IPR038662 F1F0 ATP synthase subunit C superfamily YP_4034 IPR035908 ATP synthase, F0 complex, subunit A superfamily YP_4034 IPR023011 ATP synthase, F0 complex, subunit A, active site YP_4034 IPR000568 ATP synthase, F0 complex, subunit A YP_4035 IPR005598 ATP synthase protein I YP_4036 IPR003682 rRNA small subunit methyltransferase G YP_4036 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_4037 IPR020595 MnmG-related, conserved site YP_4037 IPR026904 GidA associated domain 3 YP_4037 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related YP_4037 IPR036188 FAD/NAD(P)-binding domain superfamily YP_4037 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG YP_pCD01 IPR001584 Integrase, catalytic core YP_pCD01 IPR017894 HTH domain, IS21 transposase-type YP_pCD01 IPR036397 Ribonuclease H superfamily YP_pCD01 IPR006120 Resolvase, HTH domain YP_pCD01 IPR012337 Ribonuclease H-like superfamily YP_pCD02 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pCD02 IPR002611 IstB-like ATP-binding protein YP_pCD02 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_pCD02 IPR001270 ClpA/B family YP_pCD02 IPR003593 AAA+ ATPase domain YP_pCD04 IPR012337 Ribonuclease H-like superfamily YP_pCD06 IPR019661 Replication regulatory protein RepA2 YP_pCD08 IPR017837 Plasmid replication initiator, RepA, IncFII type YP_pCD08 IPR003446 Plasmid replication initiation, RepA YP_pCD13 IPR011009 Protein kinase-like domain superfamily YP_pCD13 IPR008271 Serine/threonine-protein kinase, active site YP_pCD13 IPR019093 Rac1-binding domain YP_pCD13 IPR003547 Serine/threonine protein kinase, yersinia-type YP_pCD13 IPR000719 Protein kinase domain YP_pCD15 IPR036397 Ribonuclease H superfamily YP_pCD15 IPR025948 HTH-like domain YP_pCD15 IPR012337 Ribonuclease H-like superfamily YP_pCD15 IPR001584 Integrase, catalytic core YP_pCD16 IPR004291 Transposase, IS66 YP_pCD16 IPR024474 Zinc-finger binding domain of transposase IS66 YP_pCD16 IPR039552 Transposase IS66, C-terminal YP_pCD16 IPR024463 Transposase TnpC, homeodomain YP_pCD17 IPR000387 Tyrosine specific protein phosphatases domain YP_pCD17 IPR029021 Protein-tyrosine phosphatase-like YP_pCD17 IPR000242 PTP type protein phosphatase YP_pCD17 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH YP_pCD17 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily YP_pCD17 IPR003595 Protein-tyrosine phosphatase, catalytic YP_pCD17 IPR016130 Protein-tyrosine phosphatase, active site YP_pCD17 IPR015103 Protein-tyrosine phosphatase, YopH, N-terminal YP_pCD18 IPR012337 Ribonuclease H-like superfamily YP_pCD18 IPR001584 Integrase, catalytic core YP_pCD18 IPR025948 HTH-like domain YP_pCD18 IPR036397 Ribonuclease H superfamily YP_pCD20 IPR002514 Transposase IS3/IS911family YP_pCD20 IPR009057 Homeobox-like domain superfamily YP_pCD21 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily YP_pCD21 IPR015103 Protein-tyrosine phosphatase, YopH, N-terminal YP_pCD22 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YP_pCD22 IPR012842 Type III secretion system HrpE/YscL YP_pCD23 IPR009510 Type III secretion system, secretion protein K YP_pCD24 IPR006182 Secretory protein YscJ/FliF YP_pCD24 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ YP_pCD25 IPR012670 Type III secretion system, YscI/HrpB YP_pCD26 IPR013349 Type III secretion system effector YopR YP_pCD26 IPR041814 Type III secretion system virulence factor YopR, core domain YP_pCD27 IPR013348 Type III secretion system YscG YP_pCD27 IPR011990 Tetratricopeptide-like helical domain superfamily YP_pCD28 IPR037203 Type III secretion, needle-protein-like superfamily YP_pCD28 IPR021123 Type III secretion, needle-protein-like YP_pCD28 IPR011841 Type III secretion system, needle protein YP_pCD29 IPR012671 Type III secretion system, secretion protein E YP_pCD30 IPR012843 Type III secretion system YscD/HrpQ YP_pCD30 IPR032030 YscD, cytoplasmic domain YP_pCD30 IPR000253 Forkhead-associated (FHA) domain YP_pCD30 IPR008984 SMAD/FHA domain superfamily YP_pCD30 IPR032034 Yop protein translocation protein D, periplasmic domain YP_pCD32 IPR010261 Tir chaperone protein (CesT) family YP_pCD32 IPR013353 Type III secretion system chaperone YscB YP_pCD33 IPR035181 Protein of unknown function DUF5463 YP_pCD34 IPR037923 Transcription regulator HTH-like YP_pCD34 IPR018060 DNA binding HTH domain, AraC-type YP_pCD34 IPR009057 Homeobox-like domain superfamily YP_pCD34 IPR003313 AraC-type arabinose-binding/dimerisation domain YP_pCD34 IPR018062 HTH domain AraC-type, conserved site YP_pCD34 IPR020449 Transcription regulator HTH, AraC- type YP_pCD36 IPR006307 Type III exporter system, secretion apparatus protein BsaZ YP_pCD36 IPR006135 Type III secretion system substrate exporter YP_pCD36 IPR029025 Type III secretion system substrate exporter, C-terminal YP_pCD37 IPR002010 Type III secretion system inner membrane R protein YP_pCD37 IPR006304 Type III secretion protein SpaR/YscT YP_pCD38 IPR002191 Bacterial export protein family 3 YP_pCD38 IPR006306 Type III secretion protein HrpO YP_pCD39 IPR005838 Type III secretion system inner membrane P protein YP_pCD39 IPR005773 Yop virulence translocation protein R YP_pCD40 IPR036429 SpoA-like superfamily YP_pCD40 IPR003283 Type III secretion system outer membrane, SpaO YP_pCD40 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO YP_pCD40 IPR001543 Surface presentation of antigen (SpoA) YP_pCD41 IPR021136 Flagellar hook-length control protein-like, C-terminal YP_pCD41 IPR013354 Type III secretion system needle length determinant, C-terminal domain YP_pCD42 IPR009929 Type III secretion sytem,YscO YP_pCD43 IPR005714 ATPase, type III secretion system, FliI/YscN YP_pCD43 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YP_pCD43 IPR003593 AAA+ ATPase domain YP_pCD43 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YP_pCD43 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain YP_pCD43 IPR040627 T3SS EscN ATPase, C-terminal YP_pCD43 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pCD43 IPR013380 ATPase, type III secretion system, H+-transporting YP_pCD44 IPR010812 Hypersensitivity response secretion-like, HrpJ YP_pCD44 IPR013401 Type III secretion regulator, YopN/LcrE/InvE/MxiC YP_pCD45 IPR015144 Type III secretion system effector delivery regulator TyeA YP_pCD45 IPR013351 Type III secretion system effector delivery regulator TyeA-related YP_pCD45 IPR038347 TyeA superfamily YP_pCD46 IPR012673 Type III secretion system chaperone SycN YP_pCD47 IPR012672 Type III secretion system YscX YP_pCD48 IPR016684 Type III secretion system chaperone, YscY YP_pCD48 IPR011990 Tetratricopeptide-like helical domain superfamily YP_pCD49 IPR042196 FHIPEP, domain 4 YP_pCD49 IPR042194 FHIPEP, domain 1 YP_pCD49 IPR025505 FHIPEP conserved site YP_pCD49 IPR001712 Type III secretion system FHIPEP YP_pCD49 IPR006302 Type III secretion protein HrcV YP_pCD49 IPR042193 FHIPEP, domain 3 YP_pCD50 IPR022797 Type III secretion system regulator LcrR/Chaperone CesD2 YP_pCD50 IPR013405 Type III secretion system regulator, LcrR YP_pCD51 IPR009863 Type III secretion protein, LcrG YP_pCD52 IPR005413 Low calcium response V antigen YP_pCD52 IPR036139 Virulence-associated V antigen superfamily YP_pCD53 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup YP_pCD53 IPR011990 Tetratricopeptide-like helical domain superfamily YP_pCD53 IPR013026 Tetratricopeptide repeat-containing domain YP_pCD53 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD YP_pCD53 IPR011716 Tetratricopeptide TPR-3 YP_pCD54 IPR006972 Secretion system effector C, SseC-like YP_pCD55 IPR008898 YopD-like YP_pCD57 IPR032874 DDE domain YP_pCD60 IPR001611 Leucine-rich repeat YP_pCD60 IPR032675 Leucine-rich repeat domain superfamily YP_pCD60 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YP_pCD60 IPR001611 Leucine-rich repeat YP_pCD60 IPR032675 Leucine-rich repeat domain superfamily YP_pCD60 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YP_pCD66 IPR010261 Tir chaperone protein (CesT) family YP_pCD67 IPR006473 Peptidase C58, YopT-type domain YP_pCD67 IPR038765 Papain-like cysteine peptidase superfamily YP_pCD67 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen YP_pCD68 IPR016505 Type III secretion system YopQ YP_pCD72 IPR025948 HTH-like domain YP_pCD72 IPR036397 Ribonuclease H superfamily YP_pCD72 IPR012337 Ribonuclease H-like superfamily YP_pCD72 IPR001584 Integrase, catalytic core YP_pCD74 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pCD74 IPR025669 AAA domain YP_pCD75 IPR003115 ParB/Sulfiredoxin YP_pCD75 IPR036086 ParB/Sulfiredoxin superfamily YP_pCD75 IPR004437 ParB/RepB/Spo0J partition protein YP_pCD75 IPR040873 SopB, HTH domain YP_pCD78 IPR038296 Antitoxin ParD superfamily YP_pCD78 IPR022789 Antitoxin ParD YP_pCD78 IPR010985 Ribbon-helix-helix YP_pCD81 IPR037168 Virulence factor YopE, GAP domain superfamily YP_pCD81 IPR003537 Yersinia virulence determinant YopE YP_pCD81 IPR014773 Virulence factor YopE, GAP domain YP_pCD81 IPR015110 YopE, N-terminal domain YP_pCD82 IPR005416 Type III secretion chaperone SycE YP_pCD82 IPR010261 Tir chaperone protein (CesT) family YP_pCD83 IPR025948 HTH-like domain YP_pCD83 IPR001584 Integrase, catalytic core YP_pCD83 IPR012337 Ribonuclease H-like superfamily YP_pCD83 IPR036397 Ribonuclease H superfamily YP_pCD85 IPR001584 Integrase, catalytic core YP_pCD85 IPR017894 HTH domain, IS21 transposase-type YP_pCD85 IPR012337 Ribonuclease H-like superfamily YP_pCD88 IPR025948 HTH-like domain YP_pCD88 IPR001584 Integrase, catalytic core YP_pCD88 IPR012337 Ribonuclease H-like superfamily YP_pCD88 IPR036397 Ribonuclease H superfamily YP_pCD89 IPR002514 Transposase IS3/IS911family YP_pCD89 IPR009057 Homeobox-like domain superfamily YP_pCD92 IPR006120 Resolvase, HTH domain YP_pCD92 IPR009057 Homeobox-like domain superfamily YP_pCD92 IPR006118 Recombinase, conserved site YP_pCD92 IPR006119 Resolvase, N-terminal catalytic domain YP_pCD92 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily YP_pCD93 IPR002513 Tn3 transposase DDE domain YP_pCD93 IPR025296 Domain of unknown function DUF4158 YP_pCD97 IPR040668 TraI, 2B/2B-like domain YP_pCD97 IPR014059 Conjugative relaxase, N-terminal YP_pCD97 IPR014129 Conjugative transfer relaxase protein TraI YP_pCD97 IPR009767 DNA helicase, TraI type YP_pCD97 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pCD97 IPR040987 TraI, N-terminal subdomain YP_pCD97 IPR014862 TrwC relaxase YP_pCRY01 IPR003446 Plasmid replication initiation, RepA YP_pCRY04 IPR006645 NusG, N-terminal YP_pCRY04 IPR036735 NusG, N-terminal domain superfamily YP_pCRY04 IPR010215 Transcription antitermination protein RfaH YP_pCRY08 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 YP_pCRY09 IPR004346 CagE, TrbE, VirB component of type IV transporter system YP_pCRY09 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain YP_pCRY09 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pCRY14 IPR033645 VirB9/CagX/TrbG, C-terminal YP_pCRY14 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily YP_pCRY14 IPR010258 Conjugal transfer, TrbG/VirB9/CagX YP_pCRY14 IPR014148 P-type conjugative transfer protein VirB9 YP_pCRY15 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI YP_pCRY15 IPR042217 Type IV secretion system, VirB10/TrbI YP_pCRY16 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pCRY16 IPR014155 Type IV secretion system protein VirB11 YP_pCRY16 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YP_pCRY16 IPR001482 Type II/IV secretion system protein YP_pCRY24 IPR035437 SNase-like, OB-fold superfamily YP_pCRY24 IPR002071 Thermonuclease active site YP_pCRY24 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold YP_pMT001 IPR001584 Integrase, catalytic core YP_pMT001 IPR006120 Resolvase, HTH domain YP_pMT001 IPR012337 Ribonuclease H-like superfamily YP_pMT001 IPR036397 Ribonuclease H superfamily YP_pMT001 IPR017894 HTH domain, IS21 transposase-type YP_pMT002 IPR001270 ClpA/B family YP_pMT002 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_pMT002 IPR002611 IstB-like ATP-binding protein YP_pMT002 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pMT002 IPR003593 AAA+ ATPase domain YP_pMT003 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YP_pMT005 IPR008969 Carboxypeptidase-like, regulatory domain superfamily YP_pMT005 IPR011083 Phage tail collar domain YP_pMT005 IPR037053 Phage tail collar domain superfamily YP_pMT005 IPR011083 Phage tail collar domain YP_pMT005 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 YP_pMT005 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal YP_pMT005 IPR008969 Carboxypeptidase-like, regulatory domain superfamily YP_pMT005 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 YP_pMT005 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal YP_pMT005 IPR037053 Phage tail collar domain superfamily YP_pMT012 IPR013491 Caudovirus, tape measure, N-terminal YP_pMT030 IPR005074 Peptidase C39, bacteriocin processing YP_pMT030 IPR003593 AAA+ ATPase domain YP_pMT030 IPR011527 ABC transporter type 1, transmembrane domain YP_pMT030 IPR036640 ABC transporter type 1, transmembrane domain superfamily YP_pMT030 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pMT030 IPR017871 ABC transporter, conserved site YP_pMT030 IPR039421 Type I protein exporter YP_pMT030 IPR039395 Peptidase C39-like A YP_pMT030 IPR010132 ATPase, type I secretion system, HlyB YP_pMT030 IPR003439 ABC transporter-like YP_pMT031 IPR004437 ParB/RepB/Spo0J partition protein YP_pMT031 IPR003115 ParB/Sulfiredoxin YP_pMT031 IPR036086 ParB/Sulfiredoxin superfamily YP_pMT031 IPR041468 ParB/Spo0J, HTH domain YP_pMT032 IPR041468 ParB/Spo0J, HTH domain YP_pMT032 IPR004437 ParB/RepB/Spo0J partition protein YP_pMT032 IPR003115 ParB/Sulfiredoxin YP_pMT032 IPR036086 ParB/Sulfiredoxin superfamily YP_pMT033 IPR033454 RecG, wedge domain YP_pMT033 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pMT033 IPR012340 Nucleic acid-binding, OB-fold YP_pMT033 IPR001650 Helicase, C-terminal YP_pMT033 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_pMT033 IPR011545 DEAD/DEAH box helicase domain YP_pMT033 IPR004609 ATP-dependent DNA helicase RecG YP_pMT043 IPR036515 Transposase IS200-like superfamily YP_pMT043 IPR002686 Transposase IS200-like YP_pMT046 IPR000358 Ribonucleotide reductase small subunit family YP_pMT046 IPR033909 Ribonucleotide reductase small subunit YP_pMT046 IPR012348 Ribonucleotide reductase-like YP_pMT046 IPR009078 Ferritin-like superfamily YP_pMT046 IPR030475 Ribonucleotide reductase small subunit, acitve site YP_pMT047 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YP_pMT047 IPR039718 Ribonucleoside-diphosphate reductase large subunit YP_pMT047 IPR005144 ATP-cone domain YP_pMT047 IPR013346 Ribonucleotide reductase, class I , alpha subunit YP_pMT047 IPR000788 Ribonucleotide reductase large subunit, C-terminal YP_pMT047 IPR013509 Ribonucleotide reductase large subunit, N-terminal YP_pMT057 IPR000525 Initiator Rep protein YP_pMT066 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface YP_pMT066 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain YP_pMT066 IPR023400 DNA recombination and repair protein RecA, C-terminal YP_pMT066 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pMT066 IPR020584 DNA recombination/repair protein RecA, conserved site YP_pMT066 IPR013765 DNA recombination and repair protein RecA YP_pMT066 IPR003593 AAA+ ATPase domain YP_pMT068 IPR038969 Flap endonuclease YP_pMT068 IPR020045 DNA polymerase I-like, H3TH domain YP_pMT068 IPR008918 Helix-hairpin-helix motif, class 2 YP_pMT068 IPR029060 PIN-like domain superfamily YP_pMT068 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YP_pMT068 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YP_pMT068 IPR002421 5'-3' exonuclease, N-terminal YP_pMT074 IPR017894 HTH domain, IS21 transposase-type YP_pMT074 IPR012337 Ribonuclease H-like superfamily YP_pMT074 IPR001584 Integrase, catalytic core YP_pMT074 IPR036397 Ribonuclease H superfamily YP_pMT074 IPR006120 Resolvase, HTH domain YP_pMT075 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_pMT075 IPR001270 ClpA/B family YP_pMT075 IPR003593 AAA+ ATPase domain YP_pMT075 IPR002611 IstB-like ATP-binding protein YP_pMT075 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pMT077 IPR002035 von Willebrand factor, type A YP_pMT077 IPR006538 Cobalt chelatase, CobT subunit YP_pMT077 IPR025861 Cobalamin biosynthesis protein CobT VWA domain YP_pMT077 IPR036465 von Willebrand factor A-like domain superfamily YP_pMT082 IPR008966 Adhesion domain superfamily YP_pMT082 IPR038699 F1 capsule antigen superfamily YP_pMT082 IPR015335 F1 capsule antigen YP_pMT083 IPR042186 Outer membrane usher protein FimD, plug domain YP_pMT083 IPR018030 Fimbrial membrane usher, conserved site YP_pMT083 IPR025949 PapC-like, C-terminal domain YP_pMT083 IPR000015 Outer membrane usher protein YP_pMT083 IPR025885 PapC, N-terminal domain YP_pMT083 IPR037224 PapC, N-terminal domain superfamily YP_pMT084 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_pMT084 IPR013783 Immunoglobulin-like fold YP_pMT084 IPR016147 Pili assembly chaperone, N-terminal YP_pMT084 IPR008962 PapD-like superfamily YP_pMT084 IPR018046 Pili assembly chaperone, conserved site YP_pMT084 IPR016148 Pili assembly chaperone, C-terminal YP_pMT084 IPR001829 Pili assembly chaperone, bacterial YP_pMT085 IPR020449 Transcription regulator HTH, AraC- type YP_pMT085 IPR009057 Homeobox-like domain superfamily YP_pMT085 IPR018062 HTH domain AraC-type, conserved site YP_pMT085 IPR011256 Regulatory factor, effector binding domain superfamily YP_pMT085 IPR029442 GyrI-like small molecule binding domain YP_pMT085 IPR018060 DNA binding HTH domain, AraC-type YP_pMT095 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_pMT095 IPR002611 IstB-like ATP-binding protein YP_pMT095 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pMT095 IPR003593 AAA+ ATPase domain YP_pMT095 IPR001270 ClpA/B family YP_pMT096 IPR012337 Ribonuclease H-like superfamily YP_pMT096 IPR036397 Ribonuclease H superfamily YP_pMT096 IPR006120 Resolvase, HTH domain YP_pMT096 IPR001584 Integrase, catalytic core YP_pMT096 IPR017894 HTH domain, IS21 transposase-type YP_pMT097 IPR003115 ParB/Sulfiredoxin YP_pMT097 IPR004437 ParB/RepB/Spo0J partition protein YP_pMT097 IPR036086 ParB/Sulfiredoxin superfamily YP_pMT098 IPR038612 YkfF-like domain superfamily YP_pMT098 IPR009253 Protein of unknown function DUF905 YP_pMT103 IPR009811 Protein of unknown function DUF1380 YP_pMT105 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_pMT105 IPR001091 Restriction/modification DNA-methylase YP_pMT105 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YP_pMT105 IPR002941 DNA methylase N-4/N-6 YP_pMT110 IPR001126 UmuC domain YP_pMT110 IPR025188 Domain of unknown function DUF4113 YP_pMT110 IPR017961 DNA polymerase, Y-family, little finger domain YP_pMT110 IPR036775 DNA polymerase, Y-family, little finger domain superfamily YP_pMT112 IPR004437 ParB/RepB/Spo0J partition protein YP_pMT112 IPR003115 ParB/Sulfiredoxin YP_pMT112 IPR036086 ParB/Sulfiredoxin superfamily YP_pMT112 IPR014884 ParB protein family, C-terminal YP_pMT113 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pMT113 IPR041250 ParA helix turn helix domain YP_pMT113 IPR025669 AAA domain YP_pMT116 IPR006118 Recombinase, conserved site YP_pMT116 IPR006119 Resolvase, N-terminal catalytic domain YP_pMT116 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily YP_pMT116 IPR006120 Resolvase, HTH domain YP_pMT117 IPR006842 Transposase (putative), YhgA-like YP_pMT117 IPR010106 Recombination-promoting nuclease RpnA YP_pMT120 IPR000477 Reverse transcriptase domain YP_pMT124 IPR010106 Recombination-promoting nuclease RpnA YP_pMT124 IPR006842 Transposase (putative), YhgA-like YP_pMT125 IPR003346 Transposase, IS116/IS110/IS902 YP_pMT125 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal YP_pMT126 IPR001207 Transposase, mutator type YP_pPCP01 IPR006120 Resolvase, HTH domain YP_pPCP01 IPR012337 Ribonuclease H-like superfamily YP_pPCP01 IPR017894 HTH domain, IS21 transposase-type YP_pPCP01 IPR001584 Integrase, catalytic core YP_pPCP01 IPR036397 Ribonuclease H superfamily YP_pPCP02 IPR003593 AAA+ ATPase domain YP_pPCP02 IPR001270 ClpA/B family YP_pPCP02 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_pPCP02 IPR002611 IstB-like ATP-binding protein YP_pPCP02 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pPCP03 IPR035962 Rop-like superfamily YP_pPCP03 IPR000769 Regulatory protein Rop YP_pPCP08 IPR000036 Peptidase A26, omptin YP_pPCP08 IPR020079 Peptidase A26, omptin, conserved site YP_pPCP08 IPR020080 Outer membrane adhesin/peptidase omptin YP_pPCP10 IPR009241 Toxin HigB-like