locus-tag class description YP_0001 PF00258 Flavodoxin YP_0002 PF01037 Lrp/AsnC ligand binding domain YP_0003 PF03590 Aspartate-ammonia ligase YP_0004 PF05762 VWA domain containing CoxE-like protein YP_0005 PF07728 AAA domain (dynein-related subfamily) YP_0005 PF12592 Protein of unknown function (DUF3763) YP_0005 PF17868 AAA lid domain YP_0006 PF02705 K+ potassium transporter YP_0007 PF05025 RbsD / FucU transport protein family YP_0008 PF00294 pfkB family carbohydrate kinase YP_0010 PF07690 Major Facilitator Superfamily YP_0011 PF07729 FCD domain YP_0011 PF00392 Bacterial regulatory proteins, gntR family YP_0012 PF00872 Transposase, Mutator family YP_0013 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YP_0014 PF12804 MobA-like NTP transferase domain YP_0015 PF06288 Protein of unknown function (DUF1040) YP_0016 PF01636 Phosphotransferase enzyme family YP_0017 PF01323 DSBA-like thioredoxin domain YP_0018 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YP_0018 PF01612 3'-5' exonuclease YP_0018 PF01367 5'-3' exonuclease, C-terminal SAM fold YP_0018 PF00476 DNA polymerase family A YP_0019 PF01797 Transposase IS200 like YP_0020 PF01926 50S ribosome-binding GTPase YP_0021 PF04220 Der GTPase activator (YihI) YP_0022 PF06969 HemN C-terminal domain YP_0022 PF04055 Radical SAM superfamily YP_0023 PF02954 Bacterial regulatory protein, Fis family YP_0023 PF00158 Sigma-54 interaction domain YP_0023 PF00072 Response regulator receiver domain YP_0024 PF00989 PAS fold YP_0024 PF00512 His Kinase A (phospho-acceptor) domain YP_0024 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_0025 PF00120 Glutamine synthetase, catalytic domain YP_0025 PF03951 Glutamine synthetase, beta-Grasp domain YP_0028 PF13419 Haloacid dehalogenase-like hydrolase YP_0029 PF03631 Virulence factor BrkB YP_0030 PF02580 D-Tyr-tRNA(Tyr) deacylase YP_0031 PF01695 IstB-like ATP binding protein YP_0032 PF02796 Helix-turn-helix domain of resolvase YP_0032 PF00665 Integrase core domain YP_0033 PF09500 Putative thioesterase (yiiD_Cterm) YP_0033 PF00583 Acetyltransferase (GNAT) family YP_0034 PF05170 AsmA family YP_0035 PF00860 Permease family YP_0036 PF03616 Sodium/glutamate symporter YP_0037 PF00270 DEAD/DEAH box helicase YP_0037 PF00271 Helicase conserved C-terminal domain YP_0037 PF17191 RecG wedge domain YP_0038 PF12105 SpoU, rRNA methylase, C-terminal YP_0038 PF00588 SpoU rRNA Methylase family YP_0039 PF02824 TGS domain YP_0039 PF04607 Region found in RelA / SpoT proteins YP_0039 PF13291 ACT domain YP_0040 PF01192 RNA polymerase Rpb6 YP_0041 PF00625 Guanylate kinase YP_0042 PF01653 NAD-dependent DNA ligase adenylation domain YP_0042 PF03120 NAD-dependent DNA ligase OB-fold domain YP_0043 PF03458 UPF0126 domain YP_0044 PF08340 Domain of unknown function (DUF1732) YP_0044 PF03755 YicC-like family, N-terminal region YP_0045 PF03725 3' exoribonuclease family, domain 2 YP_0045 PF01138 3' exoribonuclease family, domain 1 YP_0046 PF00156 Phosphoribosyl transferase domain YP_0047 PF00440 Bacterial regulatory proteins, tetR family YP_0048 PF00692 dUTPase YP_0049 PF02441 Flavoprotein YP_0049 PF04127 DNA / pantothenate metabolism flavoprotein YP_0050 PF04002 RadC-like JAB domain YP_0051 PF00830 Ribosomal L28 family YP_0052 PF00471 Ribosomal protein L33 YP_0053 PF06827 Zinc finger found in FPG and IleRS YP_0053 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YP_0053 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YP_0054 PF01467 Cytidylyltransferase-like YP_0055 PF00535 Glycosyl transferase family 2 YP_0056 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YP_0057 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YP_0058 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YP_0059 PF01370 NAD dependent epimerase/dehydratase family YP_0060 PF00155 Aminotransferase class I and II YP_0061 PF08240 Alcohol dehydrogenase GroES-like domain YP_0061 PF00107 Zinc-binding dehydrogenase YP_0063 PF01551 Peptidase family M23 YP_0064 PF01676 Metalloenzyme superfamily YP_0064 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YP_0065 PF00581 Rhodanese-like domain YP_0066 PF00462 Glutaredoxin YP_0067 PF02556 Preprotein translocase subunit SecB YP_0068 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YP_0068 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YP_0070 PF06426 Serine acetyltransferase, N-terminal YP_0070 PF00132 Bacterial transferase hexapeptide (six repeats) YP_0071 PF00588 SpoU rRNA Methylase family YP_0072 PF02805 Metal binding domain of Ada YP_0072 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YP_0072 PF12833 Helix-turn-helix domain YP_0072 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YP_0073 PF00512 His Kinase A (phospho-acceptor) domain YP_0073 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_0073 PF00672 HAMP domain YP_0073 PF16527 Two-component sensor protein CpxA, periplasmic domain YP_0074 PF00072 Response regulator receiver domain YP_0074 PF00486 Transcriptional regulatory protein, C terminal YP_0075 PF07813 LTXXQ motif family protein YP_0077 PF04754 Putative transposase, YhgA-like YP_0079 PF16916 Dimerisation domain of Zinc Transporter YP_0079 PF01545 Cation efflux family YP_0080 PF00365 Phosphofructokinase YP_0083 PF00939 Sodium:sulfate symporter transmembrane region YP_0085 PF01695 IstB-like ATP binding protein YP_0086 PF02796 Helix-turn-helix domain of resolvase YP_0086 PF00665 Integrase core domain YP_0087 PF02585 GlcNAc-PI de-N-acetylase YP_0088 PF03466 LysR substrate binding domain YP_0088 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_0089 PF00121 Triosephosphate isomerase YP_0090 PF07305 Protein of unknown function (DUF1454) YP_0091 PF05656 Protein of unknown function (DUF805) YP_0092 PF00175 Oxidoreductase NAD-binding domain YP_0092 PF00970 Oxidoreductase FAD-binding domain YP_0093 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YP_0094 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YP_0094 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YP_0095 PF00230 Major intrinsic protein YP_0097 PF06005 Cell division protein ZapB YP_0098 PF01797 Transposase IS200 like YP_0100 PF00664 ABC transporter transmembrane region YP_0100 PF00005 ABC transporter YP_0100 PF03412 Peptidase C39 family YP_0101 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YP_0101 PF00529 HlyD membrane-fusion protein of T1SS YP_0105 PF03737 Aldolase/RraA YP_0106 PF01040 UbiA prenyltransferase family YP_0107 PF10431 C-terminal, D2-small domain, of ClpB protein YP_0107 PF00004 ATPase family associated with various cellular activities (AAA) YP_0107 PF07724 AAA domain (Cdc48 subfamily) YP_0108 PF00227 Proteasome subunit YP_0109 PF05036 Sporulation related domain YP_0110 PF00356 Bacterial regulatory proteins, lacI family YP_0111 PF00271 Helicase conserved C-terminal domain YP_0111 PF17764 3′ DNA-binding domain (3′BD) YP_0111 PF18074 Primosomal protein N C-terminal domain YP_0111 PF00270 DEAD/DEAH box helicase YP_0111 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YP_0112 PF01197 Ribosomal protein L31 YP_0113 PF05360 yiaA/B two helix domain YP_0116 PF01340 Met Apo-repressor, MetJ YP_0117 PF01053 Cys/Met metabolism PLP-dependent enzyme YP_0118 PF00696 Amino acid kinase family YP_0118 PF03447 Homoserine dehydrogenase, NAD binding domain YP_0118 PF00742 Homoserine dehydrogenase YP_0119 PF02219 Methylenetetrahydrofolate reductase YP_0120 PF13333 Integrase core domain YP_0120 PF00665 Integrase core domain YP_0120 PF13276 HTH-like domain YP_0122 PF00455 DeoR C terminal sensor domain YP_0122 PF08220 DeoR-like helix-turn-helix domain YP_0123 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YP_0123 PF01694 Rhomboid family YP_0124 PF00581 Rhodanese-like domain YP_0125 PF17874 MalT-like TPR region YP_0125 PF00196 Bacterial regulatory proteins, luxR family YP_0127 PF02446 4-alpha-glucanotransferase YP_0128 PF01106 NifU-like domain YP_0128 PF01521 Iron-sulphur cluster biosynthesis YP_0129 PF00156 Phosphoribosyl transferase domain YP_0130 PF00561 alpha/beta hydrolase fold YP_0131 PF07338 Protein of unknown function (DUF1471) YP_0132 PF09012 FeoC like transcriptional regulator YP_0133 PF07664 Ferrous iron transport protein B C terminus YP_0133 PF02421 Ferrous iron transport protein B YP_0133 PF07670 Nucleoside recognition YP_0133 PF17910 FeoB cytosolic helical domain YP_0134 PF04023 FeoA domain YP_0135 PF16921 Tex protein YqgF-like domain YP_0135 PF09371 Tex-like protein N-terminal domain YP_0135 PF00575 S1 RNA binding domain YP_0135 PF17674 HHH domain YP_0136 PF01272 Transcription elongation factor, GreA/GreB, C-term YP_0136 PF03449 Transcription elongation factor, N-terminal YP_0137 PF00486 Transcriptional regulatory protein, C terminal YP_0137 PF00072 Response regulator receiver domain YP_0138 PF00672 HAMP domain YP_0138 PF00512 His Kinase A (phospho-acceptor) domain YP_0138 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_0139 PF01293 Phosphoenolpyruvate carboxykinase YP_0140 PF01430 Hsp33 protein YP_0141 PF01479 S4 domain YP_0142 PF13419 Haloacid dehalogenase-like hydrolase YP_0143 PF07095 Intracellular growth attenuator protein IgaA YP_0145 PF00293 NUDIX domain YP_0146 PF17092 Penicillin-binding protein OB-like domain YP_0146 PF00912 Transglycosylase YP_0146 PF00905 Penicillin binding protein transpeptidase domain YP_0152 PF00263 Bacterial type II and III secretion system protein YP_0152 PF03958 Bacterial type II/III secretion system short domain YP_0153 PF01202 Shikimate kinase YP_0154 PF01761 3-dehydroquinate synthase YP_0155 PF05036 Sporulation related domain YP_0156 PF02086 D12 class N6 adenine-specific DNA methyltransferase YP_0157 PF00834 Ribulose-phosphate 3 epimerase family YP_0158 PF13419 Haloacid dehalogenase-like hydrolase YP_0159 PF00579 tRNA synthetases class I (W and Y) YP_0160 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YP_0160 PF10414 Sirohaem synthase dimerisation region YP_0160 PF14824 Sirohaem biosynthesis protein central YP_0161 PF01226 Formate/nitrite transporter YP_0162 PF13806 Rieske-like [2Fe-2S] domain YP_0163 PF18267 Rubredoxin NAD+ reductase C-terminal domain YP_0163 PF07992 Pyridine nucleotide-disulphide oxidoreductase YP_0163 PF04324 BFD-like [2Fe-2S] binding domain YP_0163 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YP_0163 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YP_0164 PF07969 Amidohydrolase family YP_0165 PF07690 Major Facilitator Superfamily YP_0167 PF00356 Bacterial regulatory proteins, lacI family YP_0169 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_0170 PF05872 Bacterial protein of unknown function (DUF853) YP_0171 PF00117 Glutamine amidotransferase class-I YP_0172 PF00202 Aminotransferase class-III YP_0173 PF12805 FUSC-like inner membrane protein yccS YP_0174 PF00027 Cyclic nucleotide-binding domain YP_0174 PF13545 Crp-like helix-turn-helix domain YP_0175 PF02566 OsmC-like protein YP_0177 PF00485 Phosphoribulokinase / Uridine kinase family YP_0178 PF06794 Uncharacterised protein family (UPF0270) YP_0179 PF00561 alpha/beta hydrolase fold YP_0180 PF01810 LysE type translocator YP_0181 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YP_0182 PF00005 ABC transporter YP_0183 PF00528 Binding-protein-dependent transport system inner membrane component YP_0184 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YP_0186 PF00535 Glycosyl transferase family 2 YP_0187 PF00005 ABC transporter YP_0187 PF12848 ABC transporter YP_0188 PF02525 Flavodoxin-like fold YP_0189 PF00999 Sodium/hydrogen exchanger family YP_0189 PF02254 TrkA-N domain YP_0190 PF09526 Probable metal-binding protein (DUF2387) YP_0191 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YP_0193 PF04102 SlyX YP_0194 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YP_0194 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YP_0195 PF13309 HTH domain YP_0195 PF08348 YheO-like PAS domain YP_0196 PF02635 DsrE/DsrF-like family YP_0197 PF02635 DsrE/DsrF-like family YP_0198 PF04077 DsrH like protein YP_0199 PF00164 Ribosomal protein S12/S23 YP_0200 PF00177 Ribosomal protein S7p/S5e YP_0201 PF03144 Elongation factor Tu domain 2 YP_0201 PF03764 Elongation factor G, domain IV YP_0201 PF14492 Elongation Factor G, domain II YP_0201 PF00679 Elongation factor G C-terminus YP_0201 PF00009 Elongation factor Tu GTP binding domain YP_0202 PF03144 Elongation factor Tu domain 2 YP_0202 PF03143 Elongation factor Tu C-terminal domain YP_0202 PF00009 Elongation factor Tu GTP binding domain YP_0203 PF01797 Transposase IS200 like YP_0204 PF04324 BFD-like [2Fe-2S] binding domain YP_0205 PF00210 Ferritin-like domain YP_0206 PF00338 Ribosomal protein S10p/S20e YP_0207 PF00297 Ribosomal protein L3 YP_0208 PF00573 Ribosomal protein L4/L1 family YP_0209 PF00276 Ribosomal protein L23 YP_0210 PF00181 Ribosomal Proteins L2, RNA binding domain YP_0210 PF03947 Ribosomal Proteins L2, C-terminal domain YP_0211 PF00203 Ribosomal protein S19 YP_0212 PF00237 Ribosomal protein L22p/L17e YP_0213 PF00189 Ribosomal protein S3, C-terminal domain YP_0213 PF07650 KH domain YP_0214 PF00252 Ribosomal protein L16p/L10e YP_0215 PF00831 Ribosomal L29 protein YP_0216 PF00366 Ribosomal protein S17 YP_0217 PF00238 Ribosomal protein L14p/L23e YP_0218 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YP_0218 PF00467 KOW motif YP_0219 PF00673 ribosomal L5P family C-terminus YP_0219 PF00281 Ribosomal protein L5 YP_0220 PF00253 Ribosomal protein S14p/S29e YP_0221 PF00410 Ribosomal protein S8 YP_0222 PF00347 Ribosomal protein L6 YP_0223 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YP_0224 PF03719 Ribosomal protein S5, C-terminal domain YP_0224 PF00333 Ribosomal protein S5, N-terminal domain YP_0225 PF00327 Ribosomal protein L30p/L7e YP_0226 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YP_0227 PF00344 SecY translocase YP_0228 PF00444 Ribosomal protein L36 YP_0229 PF00416 Ribosomal protein S13/S18 YP_0230 PF00411 Ribosomal protein S11 YP_0231 PF00163 Ribosomal protein S4/S9 N-terminal domain YP_0231 PF01479 S4 domain YP_0232 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YP_0232 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YP_0232 PF01000 RNA polymerase Rpb3/RpoA insert domain YP_0233 PF01196 Ribosomal protein L17 YP_0234 PF13411 MerR HTH family regulatory protein YP_0235 PF03889 Alternative ribosome-rescue factor A YP_0236 PF01741 Large-conductance mechanosensitive channel, MscL YP_0237 PF02254 TrkA-N domain YP_0237 PF02080 TrkA-C domain YP_0238 PF01189 16S rRNA methyltransferase RsmB/F YP_0238 PF01029 NusB family YP_0239 PF00551 Formyl transferase YP_0239 PF02911 Formyl transferase, C-terminal domain YP_0240 PF01327 Polypeptide deformylase YP_0241 PF17782 DprA winged helix domain YP_0241 PF02481 DNA recombination-mediator protein A YP_0242 PF04361 Protein of unknown function (DUF494) YP_0243 PF01396 Topoisomerase DNA binding C4 zinc finger YP_0244 PF01300 Telomere recombination YP_0245 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YP_0245 PF01488 Shikimate / quinate 5-dehydrogenase YP_0245 PF08501 Shikimate dehydrogenase substrate binding domain YP_0246 PF00132 Bacterial transferase hexapeptide (six repeats) YP_0247 PF01527 Transposase YP_0248 PF13683 Integrase core domain YP_0248 PF13276 HTH-like domain YP_0249 PF01695 IstB-like ATP binding protein YP_0250 PF00665 Integrase core domain YP_0250 PF02796 Helix-turn-helix domain of resolvase YP_0251 PF01797 Transposase IS200 like YP_0252 PF03884 DNA gyrase inhibitor YacG YP_0253 PF07072 Cell division protein YP_0254 PF01121 Dephospho-CoA kinase YP_0256 PF00478 IMP dehydrogenase / GMP reductase domain YP_0257 PF00482 Type II secretion system (T2SS), protein F YP_0258 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YP_0258 PF00437 Type II/IV secretion system protein YP_0259 PF07963 Prokaryotic N-terminal methylation motif YP_0260 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YP_0260 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YP_0261 PF01510 N-acetylmuramoyl-L-alanine amidase YP_0262 PF17113 Regulatory signalling modulator protein AmpE YP_0263 PF00324 Amino acid permease YP_0264 PF00392 Bacterial regulatory proteins, gntR family YP_0264 PF07729 FCD domain YP_0265 PF17831 Pyruvate dehydrogenase E1 component middle domain YP_0265 PF00456 Transketolase, thiamine diphosphate binding domain YP_0266 PF02817 e3 binding domain YP_0266 PF00364 Biotin-requiring enzyme YP_0266 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YP_0268 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_0268 PF07992 Pyridine nucleotide-disulphide oxidoreductase YP_0269 PF01797 Transposase IS200 like YP_0270 PF11791 Aconitate B N-terminal domain YP_0270 PF00330 Aconitase family (aconitate hydratase) YP_0270 PF06434 Aconitate hydratase 2 N-terminus YP_0271 PF06062 Uncharacterised protein family (UPF0231) YP_0272 PF00892 EamA-like transporter family YP_0273 PF02675 S-adenosylmethionine decarboxylase YP_0274 PF17284 Spermidine synthase tetramerisation domain YP_0275 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YP_0276 PF10518 TAT (twin-arginine translocation) pathway signal sequence YP_0276 PF00394 Multicopper oxidase YP_0276 PF07732 Multicopper oxidase YP_0276 PF07731 Multicopper oxidase YP_0277 PF00156 Phosphoribosyl transferase domain YP_0278 PF00484 Carbonic anhydrase YP_0279 PF00005 ABC transporter YP_0280 PF01061 ABC-2 type transporter YP_0282 PF02261 Aspartate decarboxylase YP_0283 PF02569 Pantoate-beta-alanine ligase YP_0284 PF02548 Ketopantoate hydroxymethyltransferase YP_0285 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YP_0286 PF01743 Poly A polymerase head domain YP_0286 PF12626 Polymerase A arginine-rich C-terminus YP_0286 PF12627 Probable RNA and SrmB- binding site of polymerase A YP_0287 PF00749 tRNA synthetases class I (E and Q), catalytic domain YP_0288 PF01258 Prokaryotic dksA/traR C4-type zinc finger YP_0289 PF03749 Sugar fermentation stimulation protein RE domain YP_0289 PF17746 SfsA N-terminal OB domain YP_0290 PF02834 LigT like Phosphoesterase YP_0291 PF08482 ATP-dependent helicase C-terminal YP_0291 PF04408 Helicase associated domain (HA2) YP_0291 PF00270 DEAD/DEAH box helicase YP_0291 PF00271 Helicase conserved C-terminal domain YP_0292 PF14814 Bifunctional transglycosylase second domain YP_0292 PF00905 Penicillin binding protein transpeptidase domain YP_0292 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YP_0292 PF00912 Transglycosylase YP_0293 PF00005 ABC transporter YP_0294 PF01497 Periplasmic binding protein YP_0295 PF01032 FecCD transport family YP_0296 PF00202 Aminotransferase class-III YP_0297 PF00654 Voltage gated chloride channel YP_0298 PF01521 Iron-sulphur cluster biosynthesis YP_0299 PF03458 UPF0126 domain YP_0300 PF01497 Periplasmic binding protein YP_0301 PF01048 Phosphorylase superfamily YP_0302 PF13286 Phosphohydrolase-associated domain YP_0302 PF01966 HD domain YP_0303 PF00595 PDZ domain YP_0304 PF00512 His Kinase A (phospho-acceptor) domain YP_0304 PF00072 Response regulator receiver domain YP_0304 PF01627 Hpt domain YP_0304 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_0304 PF00672 HAMP domain YP_0304 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YP_0306 PF04607 Region found in RelA / SpoT proteins YP_0306 PF02824 TGS domain YP_0306 PF13291 ACT domain YP_0308 PF03819 MazG nucleotide pyrophosphohydrolase domain YP_0309 PF06418 CTP synthase N-terminus YP_0309 PF00117 Glutamine amidotransferase class-I YP_0310 PF00113 Enolase, C-terminal TIM barrel domain YP_0310 PF03952 Enolase, N-terminal domain YP_0311 PF00080 Copper/zinc superoxide dismutase (SODC) YP_0312 PF04055 Radical SAM superfamily YP_0313 PF01242 6-pyruvoyl tetrahydropterin synthase YP_0314 PF00258 Flavodoxin YP_0314 PF00667 FAD binding domain YP_0314 PF00175 Oxidoreductase NAD-binding domain YP_0315 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YP_0315 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YP_0321 PF01507 Phosphoadenosine phosphosulfate reductase family YP_0322 PF00009 Elongation factor Tu GTP binding domain YP_0324 PF12084 Protein of unknown function (DUF3561) YP_0325 PF04977 Septum formation initiator YP_0326 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_0327 PF02542 YgbB family YP_0328 PF01142 tRNA pseudouridine synthase D (TruD) YP_0329 PF01975 Survival protein SurE YP_0331 PF01476 LysM domain YP_0331 PF01551 Peptidase family M23 YP_0332 PF04545 Sigma-70, region 4 YP_0332 PF04542 Sigma-70 region 2 YP_0332 PF00140 Sigma-70 factor, region 1.2 YP_0332 PF04539 Sigma-70 region 3 YP_0333 PF01624 MutS domain I YP_0333 PF00488 MutS domain V YP_0333 PF05188 MutS domain II YP_0333 PF05192 MutS domain III YP_0333 PF05190 MutS family domain IV YP_0334 PF02502 Ribose/Galactose Isomerase YP_0335 PF08240 Alcohol dehydrogenase GroES-like domain YP_0335 PF00107 Zinc-binding dehydrogenase YP_0337 PF02733 Dak1 domain YP_0338 PF02734 DAK2 domain YP_0339 PF13936 Helix-turn-helix domain YP_0339 PF04198 Putative sugar-binding domain YP_0340 PF02040 Arsenical pump membrane protein YP_0341 PF01022 Bacterial regulatory protein, arsR family YP_0344 PF00497 Bacterial extracellular solute-binding proteins, family 3 YP_0345 PF14376 Haem-binding domain YP_0345 PF00034 Cytochrome c YP_0345 PF03150 Di-haem cytochrome c peroxidase YP_0347 PF00593 TonB dependent receptor YP_0347 PF07715 TonB-dependent Receptor Plug Domain YP_0350 PF00557 Metallopeptidase family M24 YP_0352 PF05683 Fumarase C-terminus YP_0352 PF05681 Fumarate hydratase (Fumerase) YP_0353 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YP_0353 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YP_0354 PF01261 Xylose isomerase-like TIM barrel YP_0355 PF02653 Branched-chain amino acid transport system / permease component YP_0356 PF02653 Branched-chain amino acid transport system / permease component YP_0357 PF00005 ABC transporter YP_0359 PF00455 DeoR C terminal sensor domain YP_0359 PF08220 DeoR-like helix-turn-helix domain YP_0360 PF00596 Class II Aldolase and Adducin N-terminal domain YP_0361 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YP_0361 PF00384 Molybdopterin oxidoreductase YP_0361 PF01568 Molydopterin dinucleotide binding domain YP_0362 PF13247 4Fe-4S dicluster domain YP_0362 PF12800 4Fe-4S binding domain YP_0363 PF04976 DMSO reductase anchor subunit (DmsC) YP_0364 PF02613 Nitrate reductase delta subunit YP_0365 PF01292 Prokaryotic cytochrome b561 YP_0366 PF07361 Cytochrome b562 YP_0367 PF00141 Peroxidase YP_0370 PF00005 ABC transporter YP_0371 PF02653 Branched-chain amino acid transport system / permease component YP_0372 PF00456 Transketolase, thiamine diphosphate binding domain YP_0373 PF02780 Transketolase, C-terminal domain YP_0373 PF02779 Transketolase, pyrimidine binding domain YP_0374 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YP_0374 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YP_0377 PF07690 Major Facilitator Superfamily YP_0378 PF02464 Competence-damaged protein YP_0379 PF00154 recA bacterial DNA recombination protein YP_0380 PF02631 RecX family YP_0381 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YP_0381 PF01411 tRNA synthetases class II (A) YP_0381 PF02272 DHHA1 domain YP_0382 PF02599 Global regulator protein family YP_0383 PF13419 Haloacid dehalogenase-like hydrolase YP_0384 PF09335 SNARE associated Golgi protein YP_0385 PF04262 Glutamate-cysteine ligase YP_0386 PF02664 S-Ribosylhomocysteinase (LuxS) YP_0387 PF01595 Cyclin M transmembrane N-terminal domain YP_0387 PF00571 CBS domain YP_0387 PF03471 Transporter associated domain YP_0388 PF01578 Cytochrome C assembly protein YP_0389 PF02881 SRP54-type protein, helical bundle domain YP_0389 PF02978 Signal peptide binding domain YP_0389 PF00448 SRP54-type protein, GTPase domain YP_0391 PF00886 Ribosomal protein S16 YP_0392 PF05239 PRC-barrel domain YP_0392 PF01782 RimM N-terminal domain YP_0393 PF01746 tRNA (Guanine-1)-methyltransferase YP_0394 PF01245 Ribosomal protein L19 YP_0395 PF04338 Protein of unknown function, DUF481 YP_0397 PF04397 LytTr DNA-binding domain YP_0397 PF00072 Response regulator receiver domain YP_0398 PF00793 DAHP synthetase I family YP_0399 PF02153 Prephenate dehydrogenase YP_0399 PF01817 Chorismate mutase type II YP_0400 PF01817 Chorismate mutase type II YP_0400 PF00800 Prephenate dehydratase YP_0401 PF01695 IstB-like ATP binding protein YP_0402 PF00665 Integrase core domain YP_0402 PF02796 Helix-turn-helix domain of resolvase YP_0404 PF00474 Sodium:solute symporter family YP_0405 PF04341 Protein of unknown function, DUF485 YP_0406 PF13193 AMP-binding enzyme C-terminal domain YP_0406 PF16177 Acetyl-coenzyme A synthetase N-terminus YP_0406 PF00501 AMP-binding enzyme YP_0407 PF00375 Sodium:dicarboxylate symporter family YP_0408 PF00196 Bacterial regulatory proteins, luxR family YP_0408 PF00072 Response regulator receiver domain YP_0409 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YP_0409 PF00072 Response regulator receiver domain YP_0409 PF00672 HAMP domain YP_0409 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_0409 PF01627 Hpt domain YP_0409 PF00512 His Kinase A (phospho-acceptor) domain YP_0413 PF14525 AraC-binding-like domain YP_0413 PF12833 Helix-turn-helix domain YP_0417 PF01514 Secretory protein of YscJ/FliF family YP_0420 PF00771 FHIPEP family YP_0421 PF18269 T3SS EscN ATPase C-terminal domain YP_0421 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YP_0424 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YP_0425 PF00813 FliP family YP_0426 PF01313 Bacterial export proteins, family 3 YP_0427 PF01311 Bacterial export proteins, family 1 YP_0428 PF01312 FlhB HrpN YscU SpaS Family YP_0429 PF04143 Sulphur transport YP_0430 PF01206 Sulfurtransferase TusA YP_0431 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_0431 PF03466 LysR substrate binding domain YP_0432 PF03222 Tryptophan/tyrosine permease family YP_0433 PF01053 Cys/Met metabolism PLP-dependent enzyme YP_0434 PF00005 ABC transporter YP_0435 PF01032 FecCD transport family YP_0436 PF01497 Periplasmic binding protein YP_0437 PF05171 Haemin-degrading HemS.ChuX domain YP_0438 PF07715 TonB-dependent Receptor Plug Domain YP_0438 PF00593 TonB dependent receptor YP_0439 PF10636 Hemin uptake protein hemP YP_0440 PF13460 NAD(P)H-binding YP_0441 PF06228 Haem utilisation ChuX/HutX YP_0443 PF01695 IstB-like ATP binding protein YP_0444 PF02796 Helix-turn-helix domain of resolvase YP_0444 PF00665 Integrase core domain YP_0448 PF11202 Phosphoribosyl transferase (PRTase) YP_0448 PF15608 PELOTA RNA binding domain YP_0452 PF02342 TerD domain YP_0453 PF02342 TerD domain YP_0454 PF05099 Tellurite resistance protein TerB YP_0455 PF03741 Integral membrane protein TerC family YP_0456 PF02342 TerD domain YP_0457 PF02342 TerD domain YP_0459 PF13953 PapC C-terminal domain YP_0459 PF13954 PapC N-terminal domain YP_0459 PF00577 Outer membrane usher protein YP_0460 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YP_0464 PF01565 FAD binding domain YP_0464 PF08031 Berberine and berberine like YP_0465 PF12951 Passenger-associated-transport-repeat YP_0466 PF04345 Chorismate lyase YP_0467 PF01040 UbiA prenyltransferase family YP_0468 PF01553 Acyltransferase YP_0469 PF01219 Prokaryotic diacylglycerol kinase YP_0470 PF00717 Peptidase S24-like YP_0470 PF01726 LexA DNA binding domain YP_0471 PF01475 Ferric uptake regulator family YP_0472 PF01207 Dihydrouridine synthase (Dus) YP_0473 PF09583 Phage shock protein G (Phageshock_PspG) YP_0474 PF00107 Zinc-binding dehydrogenase YP_0474 PF08240 Alcohol dehydrogenase GroES-like domain YP_0475 PF03796 DnaB-like helicase C terminal domain YP_0475 PF00772 DnaB-like helicase N terminal domain YP_0476 PF00842 Alanine racemase, C-terminal domain YP_0476 PF01168 Alanine racemase, N-terminal domain YP_0477 PF00155 Aminotransferase class I and II YP_0478 PF04237 YjbR YP_0479 PF17755 UvrA DNA-binding domain YP_0479 PF17760 UvrA interaction domain YP_0479 PF00005 ABC transporter YP_0480 PF00436 Single-strand binding protein family YP_0481 PF05336 L-rhamnose mutarotase YP_0482 PF00465 Iron-containing alcohol dehydrogenase YP_0483 PF00596 Class II Aldolase and Adducin N-terminal domain YP_0484 PF06134 L-rhamnose isomerase (RhaA) YP_0485 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YP_0485 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YP_0487 PF12833 Helix-turn-helix domain YP_0487 PF02311 AraC-like ligand binding domain YP_0488 PF02311 AraC-like ligand binding domain YP_0488 PF12833 Helix-turn-helix domain YP_0489 PF06379 L-rhamnose-proton symport protein (RhaT) YP_0496 PF13247 4Fe-4S dicluster domain YP_0496 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YP_0496 PF07992 Pyridine nucleotide-disulphide oxidoreductase YP_0497 PF13247 4Fe-4S dicluster domain YP_0497 PF12800 4Fe-4S binding domain YP_0498 PF00384 Molybdopterin oxidoreductase YP_0498 PF01568 Molydopterin dinucleotide binding domain YP_0498 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YP_0499 PF11412 Disulphide bond corrector protein DsbC YP_0499 PF02683 Cytochrome C biogenesis protein transmembrane region YP_0500 PF03091 CutA1 divalent ion tolerance protein YP_0501 PF03605 Anaerobic c4-dicarboxylate membrane transporter YP_0502 PF00206 Lyase YP_0502 PF10415 Fumarase C C-terminus YP_0504 PF04186 FxsA cytoplasmic membrane protein YP_0505 PF00166 Chaperonin 10 Kd subunit YP_0506 PF00118 TCP-1/cpn60 chaperonin family YP_0508 PF13698 Domain of unknown function (DUF4156) YP_0509 PF04055 Radical SAM superfamily YP_0510 PF01132 Elongation factor P (EF-P) OB domain YP_0510 PF09285 Elongation factor P, C-terminal YP_0510 PF08207 Elongation factor P (EF-P) KOW-like domain YP_0511 PF00893 Small Multidrug Resistance protein YP_0512 PF02313 Fumarate reductase subunit D YP_0513 PF02300 Fumarate reductase subunit C YP_0514 PF13183 4Fe-4S dicluster domain YP_0514 PF13085 2Fe-2S iron-sulfur cluster binding domain YP_0515 PF00890 FAD binding domain YP_0515 PF02910 Fumarate reductase flavoprotein C-term YP_0517 PF00152 tRNA synthetases class II (D, K and N) YP_0518 PF12795 Mechanosensitive ion channel porin domain YP_0518 PF00924 Mechanosensitive ion channel YP_0518 PF12794 Mechanosensitive ion channel inner membrane domain 1 YP_0519 PF02666 Phosphatidylserine decarboxylase YP_0520 PF03193 RsgA GTPase YP_0521 PF00929 Exonuclease YP_0523 PF08331 Domain of unknown function (DUF1730) YP_0524 PF03853 YjeF-related protein N-terminus YP_0524 PF01256 Carbohydrate kinase YP_0525 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YP_0526 PF01520 N-acetylmuramoyl-L-alanine amidase YP_0527 PF01119 DNA mismatch repair protein, C-terminal domain YP_0527 PF08676 MutL C terminal dimerisation domain YP_0529 PF17209 Hfq protein YP_0530 PF16360 GTP-binding GTPase Middle Region YP_0530 PF13167 GTP-binding GTPase N-terminal YP_0530 PF01926 50S ribosome-binding GTPase YP_0531 PF01145 SPFH domain / Band 7 family YP_0531 PF12221 Bacterial membrane protein N terminal YP_0532 PF01145 SPFH domain / Band 7 family YP_0533 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) YP_0534 PF00709 Adenylosuccinate synthetase YP_0535 PF02082 Transcriptional regulator YP_0536 PF08461 Ribonuclease R winged-helix domain YP_0536 PF00575 S1 RNA binding domain YP_0536 PF00773 RNB domain YP_0536 PF08206 Ribonuclease B OB domain YP_0536 PF17876 Cold shock domain YP_0537 PF08032 RNA 2'-O ribose methyltransferase substrate binding YP_0537 PF00588 SpoU rRNA Methylase family YP_0538 PF18158 Adaptive response protein AidB N-terminal domain YP_0538 PF02770 Acyl-CoA dehydrogenase, middle domain YP_0538 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YP_0540 PF00326 Prolyl oligopeptidase family YP_0542 PF01250 Ribosomal protein S6 YP_0543 PF00436 Single-strand binding protein family YP_0544 PF01084 Ribosomal protein S18 YP_0545 PF03948 Ribosomal protein L9, C-terminal domain YP_0545 PF01281 Ribosomal protein L9, N-terminal domain YP_0546 PF00665 Integrase core domain YP_0546 PF02796 Helix-turn-helix domain of resolvase YP_0547 PF01695 IstB-like ATP binding protein YP_0548 PF01797 Transposase IS200 like YP_0550 PF04225 Opacity-associated protein A LysM-like domain YP_0550 PF08525 Opacity-associated protein A N-terminal motif YP_0551 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YP_0551 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YP_0552 PF04405 Domain of Unknown function (DUF542) YP_0552 PF01814 Hemerythrin HHE cation binding domain YP_0553 PF02872 5'-nucleotidase, C-terminal domain YP_0553 PF00149 Calcineurin-like phosphoesterase YP_0554 PF00459 Inositol monophosphatase family YP_0555 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YP_0556 PF06526 Protein of unknown function (DUF1107) YP_0557 PF00571 CBS domain YP_0557 PF01595 Cyclin M transmembrane N-terminal domain YP_0557 PF03471 Transporter associated domain YP_0558 PF01625 Peptide methionine sulfoxide reductase YP_0559 PF17243 POTRA domain TamA domain 1 YP_0559 PF01103 Surface antigen YP_0559 PF07244 Surface antigen variable number repeat YP_0560 PF04357 TamB, inner membrane protein subunit of TAM complex YP_0561 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YP_0562 PF00719 Inorganic pyrophosphatase YP_0563 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YP_0564 PF08245 Mur ligase middle domain YP_0564 PF01225 Mur ligase family, catalytic domain YP_0564 PF02875 Mur ligase family, glutamate ligase domain YP_0566 PF02863 Arginine repressor, C-terminal domain YP_0566 PF01316 Arginine repressor, DNA binding domain YP_0567 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YP_0567 PF00056 lactate/malate dehydrogenase, NAD binding domain YP_0568 PF13693 Winged helix-turn-helix DNA-binding YP_0570 PF00348 Polyprenyl synthetase YP_0571 PF00829 Ribosomal prokaryotic L21 protein YP_0572 PF01016 Ribosomal L27 protein YP_0573 PF00892 EamA-like transporter family YP_0574 PF01018 GTP1/OBG YP_0574 PF01926 50S ribosome-binding GTPase YP_0575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_0575 PF00672 HAMP domain YP_0575 PF00512 His Kinase A (phospho-acceptor) domain YP_0576 PF00072 Response regulator receiver domain YP_0576 PF00486 Transcriptional regulatory protein, C terminal YP_0577 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YP_0578 PF03449 Transcription elongation factor, N-terminal YP_0578 PF01272 Transcription elongation factor, GreA/GreB, C-term YP_0579 PF01985 CRS1 / YhbY (CRM) domain YP_0580 PF01728 FtsJ-like methyltransferase YP_0581 PF06480 FtsH Extracellular YP_0581 PF01434 Peptidase family M41 YP_0581 PF00004 ATPase family associated with various cellular activities (AAA) YP_0581 PF17862 AAA+ lid domain YP_0582 PF00809 Pterin binding enzyme YP_0583 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YP_0583 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YP_0583 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YP_0583 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_0584 PF03840 Preprotein translocase SecG subunit YP_0585 PF02576 RimP N-terminal domain YP_0585 PF17384 RimP C-terminal SH3 domain YP_0586 PF13184 NusA-like KH domain YP_0586 PF08529 NusA N-terminal domain YP_0586 PF00575 S1 RNA binding domain YP_0587 PF00009 Elongation factor Tu GTP binding domain YP_0587 PF03144 Elongation factor Tu domain 2 YP_0587 PF11987 Translation-initiation factor 2 YP_0587 PF08364 Bacterial translation initiation factor IF-2 associated region YP_0587 PF04760 Translation initiation factor IF-2, N-terminal region YP_0588 PF02033 Ribosome-binding factor A YP_0589 PF16198 tRNA pseudouridylate synthase B C-terminal domain YP_0589 PF01509 TruB family pseudouridylate synthase (N terminal domain) YP_0589 PF09157 Pseudouridine synthase II TruB, C-terminal YP_0590 PF00312 Ribosomal protein S15 YP_0592 PF00665 Integrase core domain YP_0592 PF13276 HTH-like domain YP_0592 PF13333 Integrase core domain YP_0593 PF00575 S1 RNA binding domain YP_0593 PF00013 KH domain YP_0593 PF03725 3' exoribonuclease family, domain 2 YP_0593 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YP_0593 PF01138 3' exoribonuclease family, domain 1 YP_0594 PF13181 Tetratricopeptide repeat YP_0594 PF07719 Tetratricopeptide repeat YP_0595 PF12343 Cold shock protein DEAD box A YP_0595 PF00271 Helicase conserved C-terminal domain YP_0595 PF00270 DEAD/DEAH box helicase YP_0595 PF03880 DbpA RNA binding domain YP_0598 PF01381 Helix-turn-helix YP_0599 PF00296 Luciferase-like monooxygenase YP_0600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YP_0600 PF00529 HlyD membrane-fusion protein of T1SS YP_0601 PF00873 AcrB/AcrD/AcrF family YP_0602 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YP_0602 PF02321 Outer membrane efflux protein YP_0607 PF13508 Acetyltransferase (GNAT) domain YP_0608 PF01541 GIY-YIG catalytic domain YP_0611 PF13416 Bacterial extracellular solute-binding protein YP_0613 PF00528 Binding-protein-dependent transport system inner membrane component YP_0617 PF13460 NAD(P)H-binding YP_0618 PF12706 Beta-lactamase superfamily domain YP_0620 PF07969 Amidohydrolase family YP_0621 PF00005 ABC transporter YP_0623 PF00005 ABC transporter YP_0624 PF06007 Phosphonate metabolism protein PhnJ YP_0625 PF05861 Bacterial phosphonate metabolism protein (PhnI) YP_0626 PF05845 Bacterial phosphonate metabolism protein (PhnH) YP_0627 PF06754 Phosphonate metabolism protein PhnG YP_0628 PF07702 UTRA domain YP_0628 PF00392 Bacterial regulatory proteins, gntR family YP_0631 PF03477 ATP cone domain YP_0631 PF13597 Anaerobic ribonucleoside-triphosphate reductase YP_0632 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YP_0632 PF00005 ABC transporter YP_0633 PF00005 ABC transporter YP_0633 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YP_0634 PF12911 N-terminal TM domain of oligopeptide transport permease C YP_0634 PF00528 Binding-protein-dependent transport system inner membrane component YP_0635 PF00528 Binding-protein-dependent transport system inner membrane component YP_0637 PF04074 YhcH/YjgK/YiaL YP_0638 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YP_0638 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YP_0639 PF06877 Regulator of ribonuclease activity B YP_0640 PF00583 Acetyltransferase (GNAT) family YP_0641 PF08264 Anticodon-binding domain of tRNA YP_0641 PF00133 tRNA synthetases class I (I, L, M and V) YP_0641 PF10458 Valyl tRNA synthetase tRNA binding arm YP_0642 PF04364 DNA polymerase III chi subunit, HolC YP_0643 PF00883 Cytosol aminopeptidase family, catalytic domain YP_0643 PF02789 Cytosol aminopeptidase family, N-terminal domain YP_0644 PF03739 Lipopolysaccharide export system permease LptF/LptG YP_0645 PF03739 Lipopolysaccharide export system permease LptF/LptG YP_0646 PF13356 Arm DNA-binding domain YP_0646 PF00589 Phage integrase family YP_0649 PF01695 IstB-like ATP binding protein YP_0650 PF02796 Helix-turn-helix domain of resolvase YP_0650 PF00665 Integrase core domain YP_0651 PF01797 Transposase IS200 like YP_0652 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YP_0653 PF13525 Outer membrane lipoprotein YP_0654 PF00849 RNA pseudouridylate synthase YP_0654 PF01479 S4 domain YP_0656 PF07724 AAA domain (Cdc48 subfamily) YP_0656 PF17871 AAA lid domain YP_0656 PF00004 ATPase family associated with various cellular activities (AAA) YP_0656 PF10431 C-terminal, D2-small domain, of ClpB protein YP_0656 PF02861 Clp amino terminal domain, pathogenicity island component YP_0657 PF10043 Predicted periplasmic lipoprotein (DUF2279) YP_0658 PF13091 PLD-like domain YP_0659 PF00583 Acetyltransferase (GNAT) family YP_0659 PF13380 CoA binding domain YP_0659 PF13607 Succinyl-CoA ligase like flavodoxin domain YP_0661 PF00085 Thioredoxin YP_0662 PF00588 SpoU rRNA Methylase family YP_0662 PF08032 RNA 2'-O ribose methyltransferase substrate binding YP_0663 PF07690 Major Facilitator Superfamily YP_0664 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YP_0664 PF00529 HlyD membrane-fusion protein of T1SS YP_0666 PF01047 MarR family YP_0667 PF05437 Branched-chain amino acid transport protein (AzlD) YP_0668 PF03591 AzlC protein YP_0669 PF07690 Major Facilitator Superfamily YP_0671 PF01425 Amidase YP_0676 PF00497 Bacterial extracellular solute-binding proteins, family 3 YP_0677 PF00528 Binding-protein-dependent transport system inner membrane component YP_0679 PF00005 ABC transporter YP_0681 PF01695 IstB-like ATP binding protein YP_0682 PF00665 Integrase core domain YP_0682 PF02796 Helix-turn-helix domain of resolvase YP_0683 PF07687 Peptidase dimerisation domain YP_0683 PF01546 Peptidase family M20/M25/M40 YP_0684 PF08479 POTRA domain, ShlB-type YP_0684 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YP_0685 PF05860 haemagglutination activity domain YP_0686 PF18071 HMW1C N-terminal YP_0686 PF18254 HMW1 domain 2 YP_0688 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YP_0688 PF09317 Domain of unknown function (DUF1974) YP_0688 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YP_0689 PF13580 SIS domain YP_0690 PF13230 Glutamine amidotransferases class-II YP_0691 PF03734 L,D-transpeptidase catalytic domain YP_0693 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YP_0693 PF11973 NQRA C-terminal domain YP_0694 PF03116 NQR2, RnfD, RnfE family YP_0695 PF04205 FMN-binding domain YP_0696 PF02508 Rnf-Nqr subunit, membrane protein YP_0697 PF02508 Rnf-Nqr subunit, membrane protein YP_0698 PF00970 Oxidoreductase FAD-binding domain YP_0698 PF00111 2Fe-2S iron-sulfur cluster binding domain YP_0698 PF00175 Oxidoreductase NAD-binding domain YP_0699 PF02424 ApbE family YP_0701 PF03009 Glycerophosphoryl diester phosphodiesterase family YP_0702 PF11799 impB/mucB/samB family C-terminal domain YP_0702 PF00817 impB/mucB/samB family YP_0702 PF11798 IMS family HHH motif YP_0703 PF07687 Peptidase dimerisation domain YP_0703 PF01546 Peptidase family M20/M25/M40 YP_0705 PF03466 LysR substrate binding domain YP_0705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_0708 PF00156 Phosphoribosyl transferase domain YP_0710 PF07417 Sigma factor-binding transcriptional regulator Crl YP_0711 PF01472 PUA domain YP_0711 PF00696 Amino acid kinase family YP_0712 PF00171 Aldehyde dehydrogenase family YP_0714 PF07317 Flagellar regulator YcgR YP_0714 PF07238 PilZ domain YP_0717 PF08241 Methyltransferase domain YP_0720 PF01202 Shikimate kinase YP_0722 PF06865 Pyrimidine/purine nucleoside phosphorylase YP_0723 PF04381 Putative exonuclease, RdgC YP_0724 PF00480 ROK family YP_0725 PF13476 AAA domain YP_0726 PF12320 Type 5 capsule protein repressor C-terminal domain YP_0726 PF00149 Calcineurin-like phosphoesterase YP_0727 PF00486 Transcriptional regulatory protein, C terminal YP_0727 PF00072 Response regulator receiver domain YP_0728 PF11808 Phosphate regulon sensor protein PhoR YP_0728 PF00512 His Kinase A (phospho-acceptor) domain YP_0728 PF00989 PAS fold YP_0728 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_0729 PF12849 PBP superfamily domain YP_0730 PF05525 Branched-chain amino acid transport protein YP_0731 PF00324 Amino acid permease YP_0732 PF02903 Alpha amylase, N-terminal ig-like domain YP_0732 PF00128 Alpha amylase, catalytic domain YP_0737 PF00578 AhpC/TSA family YP_0737 PF10417 C-terminal domain of 1-Cys peroxiredoxin YP_0738 PF04336 Acyl carrier protein phosphodiesterase YP_0739 PF02547 Queuosine biosynthesis protein YP_0740 PF01702 Queuine tRNA-ribosyltransferase YP_0741 PF02699 Preprotein translocase subunit YP_0742 PF02355 Protein export membrane protein YP_0742 PF07549 SecD/SecF GG Motif YP_0742 PF13721 SecD export protein N-terminal TM region YP_0743 PF07549 SecD/SecF GG Motif YP_0743 PF02355 Protein export membrane protein YP_0744 PF01797 Transposase IS200 like YP_0747 PF03477 ATP cone domain YP_0748 PF01872 RibD C-terminal domain YP_0748 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YP_0749 PF00885 6,7-dimethyl-8-ribityllumazine synthase YP_0750 PF01029 NusB family YP_0751 PF02769 AIR synthase related protein, C-terminal domain YP_0751 PF00586 AIR synthase related protein, N-terminal domain YP_0752 PF04608 Phosphatidylglycerophosphatase A YP_0753 PF01797 Transposase IS200 like YP_0754 PF02780 Transketolase, C-terminal domain YP_0754 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YP_0754 PF02779 Transketolase, pyrimidine binding domain YP_0755 PF00348 Polyprenyl synthetase YP_0756 PF02609 Exonuclease VII small subunit YP_0758 PF02568 Thiamine biosynthesis protein (ThiI) YP_0758 PF02926 THUMP domain YP_0759 PF01965 DJ-1/PfpI family YP_0760 PF02558 Ketopantoate reductase PanE/ApbA YP_0760 PF08546 Ketopantoate reductase PanE/ApbA C terminal YP_0761 PF04461 Protein of unknown function (DUF520) YP_0762 PF07690 Major Facilitator Superfamily YP_0763 PF01040 UbiA prenyltransferase family YP_0764 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YP_0765 PF00510 Cytochrome c oxidase subunit III YP_0766 PF00115 Cytochrome C and Quinol oxidase polypeptide I YP_0767 PF06481 COX Aromatic Rich Motif YP_0767 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YP_0768 PF03502 Nucleoside-specific channel-forming protein, Tsx YP_0769 PF07690 Major Facilitator Superfamily YP_0770 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YP_0770 PF03923 Uncharacterized lipoprotein YP_0771 PF01722 BolA-like protein YP_0773 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YP_0773 PF05698 Bacterial trigger factor protein (TF) C-terminus YP_0773 PF05697 Bacterial trigger factor protein (TF) YP_0774 PF00574 Clp protease YP_0775 PF06689 ClpX C4-type zinc finger YP_0775 PF10431 C-terminal, D2-small domain, of ClpB protein YP_0775 PF07724 AAA domain (Cdc48 subfamily) YP_0776 PF02190 ATP-dependent protease La (LON) substrate-binding domain YP_0776 PF00004 ATPase family associated with various cellular activities (AAA) YP_0776 PF05362 Lon protease (S16) C-terminal proteolytic domain YP_0777 PF00216 Bacterial DNA-binding protein YP_0778 PF13145 PPIC-type PPIASE domain YP_0781 PF06508 Queuosine biosynthesis protein QueC YP_0782 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YP_0782 PF12793 Sugar transport-related sRNA regulator N-term YP_0784 PF00291 Pyridoxal-phosphate dependent enzyme YP_0785 PF13404 AsnC-type helix-turn-helix domain YP_0785 PF01037 Lrp/AsnC ligand binding domain YP_0786 PF00005 ABC transporter YP_0786 PF00664 ABC transporter transmembrane region YP_0787 PF00664 ABC transporter transmembrane region YP_0787 PF00005 ABC transporter YP_0788 PF00543 Nitrogen regulatory protein P-II YP_0789 PF00909 Ammonium Transporter Family YP_0791 PF09619 Type III secretion system lipoprotein chaperone (YscW) YP_0792 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YP_0793 PF05321 Haemolysin expression modulating protein YP_0794 PF10757 Biofilm formation regulator YbaJ YP_0796 PF00444 Ribosomal protein L36 YP_0797 PF01197 Ribosomal protein L31 YP_0798 PF00873 AcrB/AcrD/AcrF family YP_0799 PF00529 HlyD membrane-fusion protein of T1SS YP_0799 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YP_0800 PF00440 Bacterial regulatory proteins, tetR family YP_0800 PF08361 MAATS-type transcriptional repressor, C-terminal region YP_0801 PF02635 DsrE/DsrF-like family YP_0802 PF00924 Mechanosensitive ion channel YP_0802 PF12795 Mechanosensitive ion channel porin domain YP_0802 PF12794 Mechanosensitive ion channel inner membrane domain 1 YP_0803 PF10689 Protein of unknown function (DUF2496) YP_0805 PF04304 Protein of unknown function (DUF454) YP_0806 PF00156 Phosphoribosyl transferase domain YP_0807 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YP_0807 PF12170 DNA polymerase III tau subunit V interacting with alpha YP_0807 PF12169 DNA polymerase III subunits gamma and tau domain III YP_0808 PF02575 YbaB/EbfC DNA-binding family YP_0809 PF02132 RecR protein YP_0809 PF13662 Toprim domain YP_0811 PF00183 Hsp90 protein YP_0811 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_0812 PF05191 Adenylate kinase, active site lid YP_0813 PF00762 Ferrochelatase YP_0814 PF00970 Oxidoreductase FAD-binding domain YP_0814 PF00111 2Fe-2S iron-sulfur cluster binding domain YP_0814 PF00175 Oxidoreductase NAD-binding domain YP_0815 PF00483 Nucleotidyl transferase YP_0816 PF16363 GDP-mannose 4,6 dehydratase YP_0817 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YP_0818 PF01370 NAD dependent epimerase/dehydratase family YP_0824 PF00534 Glycosyl transferases group 1 YP_0824 PF13439 Glycosyltransferase Family 4 YP_0826 PF01370 NAD dependent epimerase/dehydratase family YP_0828 PF00535 Glycosyl transferase family 2 YP_0829 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YP_0829 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_0829 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YP_0829 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YP_0830 PF02706 Chain length determinant protein YP_0831 PF00294 pfkB family carbohydrate kinase YP_0832 PF02254 TrkA-N domain YP_0832 PF00999 Sodium/hydrogen exchanger family YP_0833 PF07690 Major Facilitator Superfamily YP_0836 PF04073 Aminoacyl-tRNA editing domain YP_0837 PF01963 TraB family YP_0838 PF00403 Heavy-metal-associated domain YP_0839 PF13411 MerR HTH family regulatory protein YP_0840 PF01957 NfeD-like C-terminal, partner-binding YP_0841 PF16200 C-terminal region of band_7 YP_0841 PF01145 SPFH domain / Band 7 family YP_0842 PF00085 Thioredoxin YP_0843 PF00106 short chain dehydrogenase YP_0844 PF13472 GDSL-like Lipase/Acylhydrolase family YP_0845 PF00005 ABC transporter YP_0847 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YP_0847 PF02222 ATP-grasp domain YP_0848 PF00731 AIR carboxylase YP_0850 PF00149 Calcineurin-like phosphoesterase YP_0851 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_0852 PF09190 DALR domain YP_0852 PF01406 tRNA synthetases class I (C) catalytic domain YP_0853 PF01797 Transposase IS200 like YP_0855 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_0855 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YP_0861 PF00589 Phage integrase family YP_0864 PF01066 CDP-alcohol phosphatidyltransferase YP_0866 PF01553 Acyltransferase YP_0867 PF12146 Serine aminopeptidase, S33 YP_0867 PF12147 Putative methyltransferase YP_0868 PF00782 Dual specificity phosphatase, catalytic domain YP_0871 PF01695 IstB-like ATP binding protein YP_0872 PF00665 Integrase core domain YP_0872 PF02796 Helix-turn-helix domain of resolvase YP_0875 PF07977 FabA-like domain YP_0876 PF05362 Lon protease (S16) C-terminal proteolytic domain YP_0876 PF13654 AAA domain YP_0877 PF17414 MatP C-terminal ribbon-helix-helix domain YP_0877 PF06303 MatP N-terminal domain YP_0878 PF01797 Transposase IS200 like YP_0879 PF04245 37-kD nucleoid-associated bacterial protein YP_0880 PF07208 Protein of unknown function (DUF1414) YP_0881 PF00884 Sulfatase YP_0881 PF11893 Domain of unknown function (DUF3413) YP_0883 PF05638 Type VI secretion system effector, Hcp YP_0886 PF00232 Glycosyl hydrolase family 1 YP_0887 PF01418 Helix-turn-helix domain, rpiR family YP_0887 PF01380 SIS domain YP_0888 PF07484 Phage Tail Collar Domain YP_0891 PF04865 Baseplate J-like protein YP_0899 PF04984 Phage tail sheath protein subtilisin-like domain YP_0899 PF17482 Phage tail sheath C-terminal domain YP_0903 PF01261 Xylose isomerase-like TIM barrel YP_0904 PF08220 DeoR-like helix-turn-helix domain YP_0904 PF00455 DeoR C terminal sensor domain YP_0905 PF00596 Class II Aldolase and Adducin N-terminal domain YP_0906 PF07005 Sugar-binding N-terminal domain YP_0906 PF17042 Nucleotide-binding C-terminal domain YP_0907 PF06530 Phage antitermination protein Q YP_0908 PF01381 Helix-turn-helix YP_0908 PF00717 Peptidase S24-like YP_0909 PF06183 DinI-like family YP_0910 PF01278 Omptin family YP_0911 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YP_0911 PF00672 HAMP domain YP_0911 PF02743 Cache domain YP_0912 PF12706 Beta-lactamase superfamily domain YP_0915 PF00144 Beta-lactamase YP_0916 PF00267 Gram-negative porin YP_0917 PF07690 Major Facilitator Superfamily YP_0919 PF00196 Bacterial regulatory proteins, luxR family YP_0919 PF00072 Response regulator receiver domain YP_0920 PF09456 RcsC Alpha-Beta-Loop (ABL) YP_0920 PF00512 His Kinase A (phospho-acceptor) domain YP_0920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_0920 PF00072 Response regulator receiver domain YP_0921 PF03989 DNA gyrase C-terminal domain, beta-propeller YP_0921 PF00521 DNA gyrase/topoisomerase IV, subunit A YP_0923 PF02867 Ribonucleotide reductase, barrel domain YP_0923 PF03477 ATP cone domain YP_0923 PF00317 Ribonucleotide reductase, all-alpha domain YP_0924 PF00268 Ribonucleotide reductase, small chain YP_0925 PF00111 2Fe-2S iron-sulfur cluster binding domain YP_0926 PF03974 Ecotin YP_0927 PF00994 Probable molybdopterin binding domain YP_0929 PF03222 Tryptophan/tyrosine permease family YP_0930 PF07437 YfaZ precursor YP_0931 PF00199 Catalase YP_0931 PF06628 Catalase-related immune-responsive YP_0932 PF13307 Helicase C-terminal domain YP_0932 PF06733 DEAD_2 YP_0933 PF00267 Gram-negative porin YP_0934 PF00892 EamA-like transporter family YP_0936 PF01276 Orn/Lys/Arg decarboxylase, major domain YP_0936 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YP_0936 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YP_0937 PF13520 Amino acid permease YP_0938 PF00528 Binding-protein-dependent transport system inner membrane component YP_0939 PF00005 ABC transporter YP_0940 PF00528 Binding-protein-dependent transport system inner membrane component YP_0942 PF00581 Rhodanese-like domain YP_0945 PF00005 ABC transporter YP_0946 PF00005 ABC transporter YP_0947 PF02653 Branched-chain amino acid transport system / permease component YP_0948 PF02653 Branched-chain amino acid transport system / permease component YP_0949 PF13188 PAS domain YP_0949 PF00158 Sigma-54 interaction domain YP_0949 PF02954 Bacterial regulatory protein, Fis family YP_0950 PF07308 Protein of unknown function (DUF1456) YP_0951 PF00528 Binding-protein-dependent transport system inner membrane component YP_0952 PF00528 Binding-protein-dependent transport system inner membrane component YP_0954 PF00005 ABC transporter YP_0955 PF04226 Transglycosylase associated protein YP_0958 PF01844 HNH endonuclease YP_0959 PF01928 CYTH domain YP_0960 PF01565 FAD binding domain YP_0960 PF09330 D-lactate dehydrogenase, membrane binding YP_0961 PF00768 D-alanyl-D-alanine carboxypeptidase YP_0963 PF01207 Dihydrouridine synthase (Dus) YP_0965 PF01797 Transposase IS200 like YP_0968 PF00872 Transposase, Mutator family YP_0972 PF13358 DDE superfamily endonuclease YP_0972 PF13592 Winged helix-turn helix YP_0973 PF00271 Helicase conserved C-terminal domain YP_0973 PF00270 DEAD/DEAH box helicase YP_0974 PF00440 Bacterial regulatory proteins, tetR family YP_0974 PF09209 Tetracyclin repressor-like, C-terminal domain YP_0975 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YP_0976 PF00005 ABC transporter YP_0981 PF03466 LysR substrate binding domain YP_0981 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_0982 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YP_0983 PF00072 Response regulator receiver domain YP_0983 PF00158 Sigma-54 interaction domain YP_0983 PF02954 Bacterial regulatory protein, Fis family YP_0984 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_0984 PF00512 His Kinase A (phospho-acceptor) domain YP_0985 PF13801 Heavy-metal resistance YP_0987 PF01797 Transposase IS200 like YP_0988 PF01048 Phosphorylase superfamily YP_0990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_0990 PF03466 LysR substrate binding domain YP_0991 PF02028 BCCT, betaine/carnitine/choline family transporter YP_0992 PF00440 Bacterial regulatory proteins, tetR family YP_0992 PF13977 BetI-type transcriptional repressor, C-terminal YP_0993 PF00171 Aldehyde dehydrogenase family YP_0994 PF00732 GMC oxidoreductase YP_0994 PF05199 GMC oxidoreductase YP_0995 PF01797 Transposase IS200 like YP_0996 PF01027 Inhibitor of apoptosis-promoting Bax1 YP_0997 PF02391 MoaE protein YP_0998 PF02597 ThiS family YP_0999 PF01967 MoaC family YP_1000 PF04055 Radical SAM superfamily YP_1000 PF06463 Molybdenum Cofactor Synthesis C YP_1001 PF01933 Uncharacterised protein family UPF0052 YP_1002 PF09905 DNA-binding protein VF530 YP_1003 PF17757 UvrB interaction domain YP_1003 PF12344 Ultra-violet resistance protein B YP_1003 PF02151 UvrB/uvrC motif YP_1003 PF04851 Type III restriction enzyme, res subunit YP_1003 PF00271 Helicase conserved C-terminal domain YP_1007 PF08241 Methyltransferase domain YP_1008 PF00155 Aminotransferase class I and II YP_1009 PF04055 Radical SAM superfamily YP_1009 PF06968 Biotin and Thiamin Synthesis associated domain YP_1010 PF00202 Aminotransferase class-III YP_1011 PF10282 Lactonase, 7-bladed beta-propeller YP_1013 PF03459 TOBE domain YP_1013 PF00005 ABC transporter YP_1014 PF00528 Binding-protein-dependent transport system inner membrane component YP_1016 PF10766 Multidrug efflux pump-associated protein AcrZ YP_1017 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_1017 PF03459 TOBE domain YP_1018 PF00005 ABC transporter YP_1020 PF16363 GDP-mannose 4,6 dehydratase YP_1021 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YP_1021 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YP_1022 PF00288 GHMP kinases N terminal domain YP_1022 PF08544 GHMP kinases C terminal YP_1022 PF10509 Galactokinase galactose-binding signature YP_1025 PF00300 Histidine phosphatase superfamily (branch 1) YP_1026 PF00793 DAHP synthetase I family YP_1027 PF01545 Cation efflux family YP_1028 PF04973 Nicotinamide mononucleotide transporter YP_1029 PF02445 Quinolinate synthetase A protein YP_1030 PF13174 Tetratricopeptide repeat YP_1030 PF16331 TolA binding protein trimerisation YP_1031 PF00691 OmpA family YP_1032 PF07676 WD40-like Beta Propeller Repeat YP_1032 PF04052 TolB amino-terminal domain YP_1033 PF06519 TolA C-terminal YP_1033 PF06519 TolA C-terminal YP_1034 PF02472 Biopolymer transport protein ExbD/TolR YP_1035 PF01618 MotA/TolQ/ExbB proton channel family YP_1036 PF03061 Thioesterase superfamily YP_1037 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) YP_1038 PF02322 Cytochrome bd terminal oxidase subunit II YP_1039 PF01654 Cytochrome bd terminal oxidase subunit I YP_1040 PF00549 CoA-ligase YP_1040 PF02629 CoA binding domain YP_1041 PF08442 ATP-grasp domain YP_1041 PF00549 CoA-ligase YP_1042 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YP_1042 PF00364 Biotin-requiring enzyme YP_1042 PF02817 e3 binding domain YP_1043 PF16078 2-oxoglutarate dehydrogenase N-terminus YP_1043 PF00676 Dehydrogenase E1 component YP_1043 PF16870 2-oxoglutarate dehydrogenase C-terminal YP_1043 PF02779 Transketolase, pyrimidine binding domain YP_1044 PF13085 2Fe-2S iron-sulfur cluster binding domain YP_1045 PF00890 FAD binding domain YP_1045 PF02910 Fumarate reductase flavoprotein C-term YP_1046 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YP_1047 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YP_1048 PF00285 Citrate synthase, C-terminal domain YP_1049 PF01025 GrpE YP_1050 PF01513 ATP-NAD kinase YP_1051 PF02463 RecF/RecN/SMC N terminal domain YP_1052 PF04355 SmpA / OmlA family YP_1053 PF03658 RnfH family Ubiquitin YP_1054 PF03364 Polyketide cyclase / dehydrase and lipid transport YP_1055 PF01668 SmpB protein YP_1056 PF01797 Transposase IS200 like YP_1057 PF13356 Arm DNA-binding domain YP_1057 PF00589 Phage integrase family YP_1070 PF05973 Phage derived protein Gp49-like (DUF891) YP_1072 PF00665 Integrase core domain YP_1072 PF02796 Helix-turn-helix domain of resolvase YP_1073 PF01695 IstB-like ATP binding protein YP_1074 PF01527 Transposase YP_1077 PF12697 Alpha/beta hydrolase family YP_1078 PF01402 Ribbon-helix-helix protein, copG family YP_1080 PF00258 Flavodoxin YP_1081 PF01475 Ferric uptake regulator family YP_1083 PF03573 outer membrane porin, OprD family YP_1084 PF00749 tRNA synthetases class I (E and Q), catalytic domain YP_1084 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YP_1085 PF02378 Phosphotransferase system, EIIC YP_1085 PF00367 phosphotransferase system, EIIB YP_1085 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YP_1086 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YP_1087 PF01979 Amidohydrolase family YP_1088 PF01047 MarR family YP_1088 PF00480 ROK family YP_1090 PF13537 Glutamine amidotransferase domain YP_1090 PF00733 Asparagine synthase YP_1092 PF01494 FAD binding domain YP_1093 PF01938 TRAM domain YP_1093 PF04055 Radical SAM superfamily YP_1093 PF00919 Uncharacterized protein family UPF0004 YP_1094 PF02562 PhoH-like protein YP_1095 PF02130 Uncharacterized protein family UPF0054 YP_1096 PF00571 CBS domain YP_1096 PF03471 Transporter associated domain YP_1097 PF00795 Carbon-nitrogen hydrolase YP_1098 PF00497 Bacterial extracellular solute-binding proteins, family 3 YP_1099 PF00528 Binding-protein-dependent transport system inner membrane component YP_1100 PF00528 Binding-protein-dependent transport system inner membrane component YP_1101 PF00005 ABC transporter YP_1102 PF07295 Zinc-ribbon containing domain YP_1103 PF00133 tRNA synthetases class I (I, L, M and V) YP_1103 PF13603 Leucyl-tRNA synthetase, Domain 2 YP_1103 PF08264 Anticodon-binding domain of tRNA YP_1104 PF04390 Lipopolysaccharide-assembly YP_1105 PF06144 DNA polymerase III, delta subunit YP_1105 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YP_1106 PF01467 Cytidylyltransferase-like YP_1108 PF02590 Predicted SPOUT methyltransferase YP_1109 PF00905 Penicillin binding protein transpeptidase domain YP_1109 PF03717 Penicillin-binding Protein dimerisation domain YP_1110 PF01098 Cell cycle protein YP_1111 PF05036 Sporulation related domain YP_1111 PF03330 Lytic transglycolase YP_1112 PF07943 Penicillin-binding protein 5, C-terminal domain YP_1112 PF00768 D-alanyl-D-alanine carboxypeptidase YP_1113 PF04359 Protein of unknown function (DUF493) YP_1114 PF03099 Biotin/lipoate A/B protein ligase family YP_1115 PF04055 Radical SAM superfamily YP_1115 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YP_1117 PF02416 mttA/Hcf106 family YP_1118 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YP_1120 PF00313 'Cold-shock' DNA-binding domain YP_1121 PF00313 'Cold-shock' DNA-binding domain YP_1122 PF00196 Bacterial regulatory proteins, luxR family YP_1127 PF00664 ABC transporter transmembrane region YP_1127 PF00005 ABC transporter YP_1128 PF04962 KduI/IolB family YP_1129 PF01261 Xylose isomerase-like TIM barrel YP_1130 PF00294 pfkB family carbohydrate kinase YP_1131 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YP_1131 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YP_1132 PF02653 Branched-chain amino acid transport system / permease component YP_1133 PF00005 ABC transporter YP_1134 PF13407 Periplasmic binding protein domain YP_1136 PF00205 Thiamine pyrophosphate enzyme, central domain YP_1136 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YP_1136 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_1137 PF00171 Aldehyde dehydrogenase family YP_1141 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YP_1141 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YP_1141 PF00207 Alpha-2-macroglobulin family YP_1141 PF07703 Alpha-2-macroglobulin bait region domain YP_1141 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YP_1141 PF01835 MG2 domain YP_1141 PF17962 Bacterial macroglobulin domain 6 YP_1142 PF00905 Penicillin binding protein transpeptidase domain YP_1142 PF00912 Transglycosylase YP_1142 PF06832 Penicillin-Binding Protein C-terminus Family YP_1143 PF13693 Winged helix-turn-helix DNA-binding YP_1150 PF05638 Type VI secretion system effector, Hcp YP_1153 PF03212 Pertactin YP_1153 PF16168 Adhesin of bacterial autotransporter system, probable stalk YP_1153 PF03797 Autotransporter beta-domain YP_1153 PF13018 Extended Signal Peptide of Type V secretion system YP_1156 PF00872 Transposase, Mutator family YP_1162 PF00248 Aldo/keto reductase family YP_1163 PF00248 Aldo/keto reductase family YP_1164 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_1164 PF03466 LysR substrate binding domain YP_1165 PF00665 Integrase core domain YP_1165 PF02796 Helix-turn-helix domain of resolvase YP_1166 PF01695 IstB-like ATP binding protein YP_1168 PF01797 Transposase IS200 like YP_1171 PF03886 ABC-type transport auxiliary lipoprotein component YP_1172 PF02470 MlaD protein YP_1173 PF04403 Paraquat-inducible protein A YP_1174 PF16326 ABC transporter C-terminal domain YP_1174 PF00005 ABC transporter YP_1174 PF12848 ABC transporter YP_1175 PF02926 THUMP domain YP_1175 PF01170 Putative RNA methylase family UPF0020 YP_1175 PF10672 S-adenosylmethionine-dependent methyltransferase YP_1176 PF03476 MOSC N-terminal beta barrel domain YP_1176 PF03473 MOSC domain YP_1176 PF00111 2Fe-2S iron-sulfur cluster binding domain YP_1177 PF07126 Cell-division protein ZapC YP_1178 PF01180 Dihydroorotate dehydrogenase YP_1179 PF11940 Domain of unknown function (DUF3458) Ig-like fold YP_1179 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YP_1179 PF01433 Peptidase family M1 domain YP_1180 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YP_1180 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YP_1181 PF00152 tRNA synthetases class II (D, K and N) YP_1181 PF01336 OB-fold nucleic acid binding domain YP_1182 PF00267 Gram-negative porin YP_1183 PF00155 Aminotransferase class I and II YP_1184 PF00753 Metallo-beta-lactamase superfamily YP_1185 PF05951 Bacterial protein of unknown function (DUF882) YP_1186 PF03734 L,D-transpeptidase catalytic domain YP_1186 PF01471 Putative peptidoglycan binding domain YP_1187 PF01797 Transposase IS200 like YP_1188 PF04310 MukB N-terminal YP_1188 PF16330 MukB hinge domain YP_1189 PF04288 MukE-like family YP_1190 PF03882 MukF winged-helix domain YP_1190 PF17193 MukF C-terminal domain YP_1190 PF17192 MukF middle domain YP_1192 PF01636 Phosphotransferase enzyme family YP_1193 PF02348 Cytidylyltransferase YP_1194 PF03966 Trm112p-like protein YP_1195 PF00313 'Cold-shock' DNA-binding domain YP_1196 PF07063 Domain of unknown function (DUF1338) YP_1197 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YP_1198 PF00005 ABC transporter YP_1198 PF00664 ABC transporter transmembrane region YP_1199 PF00753 Metallo-beta-lactamase superfamily YP_1199 PF03772 Competence protein YP_1200 PF00216 Bacterial DNA-binding protein YP_1201 PF00575 S1 RNA binding domain YP_1202 PF02224 Cytidylate kinase YP_1203 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_1204 PF00266 Aminotransferase class-V YP_1206 PF05662 Coiled stalk of trimeric autotransporter adhesin YP_1206 PF05662 Coiled stalk of trimeric autotransporter adhesin YP_1206 PF13018 Extended Signal Peptide of Type V secretion system YP_1206 PF05658 Head domain of trimeric autotransporter adhesin YP_1206 PF03895 YadA-like membrane anchor domain YP_1206 PF03895 YadA-like membrane anchor domain YP_1206 PF05658 Head domain of trimeric autotransporter adhesin YP_1206 PF13018 Extended Signal Peptide of Type V secretion system YP_1207 PF17763 Glutaminase/Asparaginase C-terminal domain YP_1207 PF00710 Asparaginase, N-terminal YP_1208 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YP_1208 PF18381 YcaO cyclodehydratase C-terminal domain YP_1209 PF01226 Formate/nitrite transporter YP_1210 PF01228 Glycine radical YP_1210 PF02901 Pyruvate formate lyase-like YP_1212 PF04055 Radical SAM superfamily YP_1213 PF07690 Major Facilitator Superfamily YP_1214 PF02403 Seryl-tRNA synthetase N-terminal domain YP_1214 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YP_1215 PF16193 AAA C-terminal domain YP_1215 PF12002 MgsA AAA+ ATPase C terminal YP_1215 PF00004 ATPase family associated with various cellular activities (AAA) YP_1216 PF03548 Outer membrane lipoprotein carrier protein LolA YP_1217 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YP_1217 PF17854 FtsK alpha domain YP_1217 PF09397 Ftsk gamma domain YP_1217 PF01580 FtsK/SpoIIIE family YP_1218 PF01037 Lrp/AsnC ligand binding domain YP_1219 PF07992 Pyridine nucleotide-disulphide oxidoreductase YP_1220 PF00005 ABC transporter YP_1220 PF00664 ABC transporter transmembrane region YP_1221 PF00005 ABC transporter YP_1221 PF00664 ABC transporter transmembrane region YP_1222 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YP_1223 PF01176 Translation initiation factor 1A / IF-1 YP_1224 PF01797 Transposase IS200 like YP_1225 PF10431 C-terminal, D2-small domain, of ClpB protein YP_1225 PF02861 Clp amino terminal domain, pathogenicity island component YP_1225 PF17871 AAA lid domain YP_1225 PF00004 ATPase family associated with various cellular activities (AAA) YP_1225 PF07724 AAA domain (Cdc48 subfamily) YP_1226 PF02617 ATP-dependent Clp protease adaptor protein ClpS YP_1228 PF00313 'Cold-shock' DNA-binding domain YP_1229 PF12704 MacB-like periplasmic core domain YP_1229 PF02687 FtsX-like permease family YP_1229 PF00005 ABC transporter YP_1230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YP_1232 PF04393 Protein of unknown function (DUF535) YP_1233 PF11398 Protein of unknown function (DUF2813) YP_1234 PF03956 Lysine exporter LysO YP_1235 PF03063 Prismane/CO dehydrogenase family YP_1236 PF00111 2Fe-2S iron-sulfur cluster binding domain YP_1236 PF00970 Oxidoreductase FAD-binding domain YP_1236 PF00175 Oxidoreductase NAD-binding domain YP_1237 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YP_1237 PF00205 Thiamine pyrophosphate enzyme, central domain YP_1237 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_1239 PF01212 Beta-eliminating lyase YP_1240 PF11066 Protein of unknown function (DUF2867) YP_1240 PF13460 NAD(P)H-binding YP_1241 PF01370 NAD dependent epimerase/dehydratase family YP_1242 PF12883 Protein of unknown function (DUF3828) YP_1243 PF01817 Chorismate mutase type II YP_1244 PF00005 ABC transporter YP_1245 PF00497 Bacterial extracellular solute-binding proteins, family 3 YP_1246 PF00528 Binding-protein-dependent transport system inner membrane component YP_1247 PF00528 Binding-protein-dependent transport system inner membrane component YP_1248 PF00892 EamA-like transporter family YP_1249 PF10100 Staphylopine dehydrogenase YP_1250 PF03059 Nicotianamine synthase protein YP_1251 PF00005 ABC transporter YP_1252 PF01032 FecCD transport family YP_1256 PF00497 Bacterial extracellular solute-binding proteins, family 3 YP_1257 PF05958 tRNA (Uracil-5-)-methyltransferase YP_1258 PF10767 Protein of unknown function (DUF2593) YP_1259 PF00528 Binding-protein-dependent transport system inner membrane component YP_1260 PF00528 Binding-protein-dependent transport system inner membrane component YP_1261 PF08402 TOBE domain YP_1261 PF00005 ABC transporter YP_1262 PF13416 Bacterial extracellular solute-binding protein YP_1263 PF10722 Putative bacterial sensory transduction regulator YP_1264 PF07214 Protein of unknown function (DUF1418) YP_1265 PF00462 Glutaredoxin YP_1266 PF02080 TrkA-C domain YP_1266 PF06826 Predicted Permease Membrane Region YP_1268 PF01569 PAP2 superfamily YP_1269 PF01791 DeoC/LacD family aldolase YP_1270 PF08220 DeoR-like helix-turn-helix domain YP_1270 PF00455 DeoR C terminal sensor domain YP_1272 PF07943 Penicillin-binding protein 5, C-terminal domain YP_1272 PF00768 D-alanyl-D-alanine carboxypeptidase YP_1273 PF00528 Binding-protein-dependent transport system inner membrane component YP_1274 PF00005 ABC transporter YP_1274 PF09383 NIL domain YP_1275 PF03180 NLPA lipoprotein YP_1278 PF00043 Glutathione S-transferase, C-terminal domain YP_1278 PF13417 Glutathione S-transferase, N-terminal domain YP_1279 PF00593 TonB dependent receptor YP_1279 PF07715 TonB-dependent Receptor Plug Domain YP_1280 PF00005 ABC transporter YP_1281 PF01032 FecCD transport family YP_1283 PF00324 Amino acid permease YP_1284 PF03466 LysR substrate binding domain YP_1284 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_1285 PF03601 Conserved hypothetical protein 698 YP_1286 PF01261 Xylose isomerase-like TIM barrel YP_1287 PF13953 PapC C-terminal domain YP_1287 PF00577 Outer membrane usher protein YP_1287 PF13954 PapC N-terminal domain YP_1288 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YP_1288 PF02753 Pili assembly chaperone PapD, C-terminal domain YP_1290 PF17550 Family of unknown function YP_1291 PF00486 Transcriptional regulatory protein, C terminal YP_1292 PF02378 Phosphotransferase system, EIIC YP_1292 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YP_1293 PF00294 pfkB family carbohydrate kinase YP_1294 PF00381 PTS HPr component phosphorylation site YP_1294 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YP_1295 PF00293 NUDIX domain YP_1296 PF02653 Branched-chain amino acid transport system / permease component YP_1297 PF00005 ABC transporter YP_1299 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YP_1300 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YP_1300 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YP_1301 PF00171 Aldehyde dehydrogenase family YP_1303 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_1303 PF01842 ACT domain YP_1303 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YP_1306 PF03222 Tryptophan/tyrosine permease family YP_1307 PF01132 Elongation factor P (EF-P) OB domain YP_1307 PF08207 Elongation factor P (EF-P) KOW-like domain YP_1307 PF09285 Elongation factor P, C-terminal YP_1308 PF03786 D-mannonate dehydratase (UxuA) YP_1309 PF08125 Mannitol dehydrogenase C-terminal domain YP_1309 PF01232 Mannitol dehydrogenase Rossmann domain YP_1310 PF00392 Bacterial regulatory proteins, gntR family YP_1310 PF07729 FCD domain YP_1312 PF07683 Cobalamin synthesis protein cobW C-terminal domain YP_1312 PF02492 CobW/HypB/UreG, nucleotide-binding domain YP_1313 PF01569 PAP2 superfamily YP_1314 PF00877 NlpC/P60 family YP_1315 PF00563 EAL domain YP_1315 PF12792 CSS motif domain associated with EAL YP_1316 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YP_1317 PF00528 Binding-protein-dependent transport system inner membrane component YP_1318 PF12911 N-terminal TM domain of oligopeptide transport permease C YP_1318 PF00528 Binding-protein-dependent transport system inner membrane component YP_1319 PF00005 ABC transporter YP_1319 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YP_1320 PF13989 YejG-like protein YP_1321 PF07690 Major Facilitator Superfamily YP_1322 PF00849 RNA pseudouridylate synthase YP_1322 PF01479 S4 domain YP_1323 PF00271 Helicase conserved C-terminal domain YP_1323 PF04851 Type III restriction enzyme, res subunit YP_1324 PF01386 Ribosomal L25p family YP_1325 PF01797 Transposase IS200 like YP_1326 PF01389 OmpA-like transmembrane domain YP_1326 PF00691 OmpA family YP_1327 PF03846 Cell division inhibitor SulA YP_1328 PF04993 TfoX N-terminal domain YP_1328 PF04994 TfoX C-terminal domain YP_1329 PF12805 FUSC-like inner membrane protein yccS YP_1330 PF03733 Inner membrane component domain YP_1331 PF00580 UvrD/REP helicase N-terminal domain YP_1331 PF12462 DNA helicase IV / RNA helicase N terminal YP_1331 PF13361 UvrD-like helicase C-terminal domain YP_1332 PF02142 MGS-like domain YP_1333 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YP_1334 PF13380 CoA binding domain YP_1335 PF08755 Hemimethylated DNA-binding protein YccV like YP_1336 PF17785 PUA-like domain YP_1336 PF10672 S-adenosylmethionine-dependent methyltransferase YP_1337 PF00708 Acylphosphatase YP_1338 PF04358 DsrC like protein YP_1339 PF13610 DDE domain YP_1341 PF02796 Helix-turn-helix domain of resolvase YP_1341 PF00665 Integrase core domain YP_1342 PF01695 IstB-like ATP binding protein YP_1343 PF08031 Berberine and berberine like YP_1343 PF01565 FAD binding domain YP_1346 PF07977 FabA-like domain YP_1347 PF02801 Beta-ketoacyl synthase, C-terminal domain YP_1347 PF00109 Beta-ketoacyl synthase, N-terminal domain YP_1349 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YP_1349 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YP_1351 PF00378 Enoyl-CoA hydratase/isomerase YP_1354 PF00550 Phosphopantetheine attachment site YP_1355 PF00698 Acyl transferase domain YP_1360 PF00691 OmpA family YP_1360 PF05736 OprF membrane domain YP_1362 PF07724 AAA domain (Cdc48 subfamily) YP_1362 PF17871 AAA lid domain YP_1362 PF10431 C-terminal, D2-small domain, of ClpB protein YP_1362 PF00004 ATPase family associated with various cellular activities (AAA) YP_1369 PF13358 DDE superfamily endonuclease YP_1369 PF13592 Winged helix-turn helix YP_1381 PF12848 ABC transporter YP_1381 PF00005 ABC transporter YP_1383 PF00872 Transposase, Mutator family YP_1384 PF00899 ThiF family YP_1385 PF03453 MoeA N-terminal region (domain I and II) YP_1385 PF00994 Probable molybdopterin binding domain YP_1385 PF03454 MoeA C-terminal region (domain IV) YP_1387 PF00005 ABC transporter YP_1388 PF13533 Biotin-lipoyl like YP_1391 PF00756 Putative esterase YP_1392 PF08240 Alcohol dehydrogenase GroES-like domain YP_1392 PF00107 Zinc-binding dehydrogenase YP_1393 PF03466 LysR substrate binding domain YP_1393 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_1394 PF06779 Uncharacterised MFS-type transporter YbfB YP_1395 PF01227 GTP cyclohydrolase I YP_1396 PF04235 Protein of unknown function (DUF418) YP_1397 PF13407 Periplasmic binding protein domain YP_1398 PF00005 ABC transporter YP_1399 PF02653 Branched-chain amino acid transport system / permease component YP_1400 PF02698 DUF218 domain YP_1401 PF03949 Malic enzyme, NAD binding domain YP_1401 PF00390 Malic enzyme, N-terminal domain YP_1402 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YP_1402 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YP_1403 PF04172 LrgB-like family YP_1404 PF03788 LrgA family YP_1405 PF07690 Major Facilitator Superfamily YP_1410 PF01797 Transposase IS200 like YP_1411 PF09334 tRNA synthetases class I (M) YP_1411 PF01588 Putative tRNA binding domain YP_1412 PF10609 NUBPL iron-transfer P-loop NTPase YP_1413 PF00485 Phosphoribulokinase / Uridine kinase family YP_1414 PF00692 dUTPase YP_1415 PF05170 AsmA family YP_1416 PF00571 CBS domain YP_1416 PF03471 Transporter associated domain YP_1416 PF03741 Integral membrane protein TerC family YP_1417 PF11575 FhuF 2Fe-2S C-terminal domain YP_1417 PF06276 Ferric iron reductase FhuF-like transporter YP_1418 PF00282 Pyridoxal-dependent decarboxylase conserved domain YP_1419 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YP_1421 PF04183 IucA / IucC family YP_1421 PF06276 Ferric iron reductase FhuF-like transporter YP_1422 PF00005 ABC transporter YP_1423 PF01032 FecCD transport family YP_1424 PF01032 FecCD transport family YP_1425 PF01497 Periplasmic binding protein YP_1426 PF07715 TonB-dependent Receptor Plug Domain YP_1426 PF07660 Secretin and TonB N terminus short domain YP_1426 PF00593 TonB dependent receptor YP_1427 PF04183 IucA / IucC family YP_1427 PF06276 Ferric iron reductase FhuF-like transporter YP_1428 PF00483 Nucleotidyl transferase YP_1429 PF00483 Nucleotidyl transferase YP_1430 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YP_1430 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YP_1431 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YP_1431 PF01502 Phosphoribosyl-AMP cyclohydrolase YP_1432 PF00977 Histidine biosynthesis protein YP_1433 PF00977 Histidine biosynthesis protein YP_1434 PF00117 Glutamine amidotransferase class-I YP_1435 PF00475 Imidazoleglycerol-phosphate dehydratase YP_1436 PF00155 Aminotransferase class I and II YP_1437 PF00815 Histidinol dehydrogenase YP_1438 PF08029 HisG, C-terminal domain YP_1438 PF01634 ATP phosphoribosyltransferase YP_1440 PF01370 NAD dependent epimerase/dehydratase family YP_1442 PF02653 Branched-chain amino acid transport system / permease component YP_1444 PF00465 Iron-containing alcohol dehydrogenase YP_1445 PF13520 Amino acid permease YP_1446 PF08411 Exonuclease C-terminal YP_1446 PF00929 Exonuclease YP_1448 PF04363 Protein of unknown function (DUF496) YP_1451 PF07690 Major Facilitator Superfamily YP_1452 PF04134 Protein of unknown function, DUF393 YP_1454 PF01557 Fumarylacetoacetate (FAA) hydrolase family YP_1455 PF13378 Enolase C-terminal domain-like YP_1455 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YP_1457 PF01070 FMN-dependent dehydrogenase YP_1458 PF00764 Arginosuccinate synthase YP_1459 PF01554 MatE YP_1461 PF01522 Polysaccharide deacetylase YP_1463 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YP_1464 PF00072 Response regulator receiver domain YP_1464 PF00196 Bacterial regulatory proteins, luxR family YP_1465 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YP_1467 PF03480 Bacterial extracellular solute-binding protein, family 7 YP_1468 PF01648 4'-phosphopantetheinyl transferase superfamily YP_1468 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YP_1469 PF16875 Glycosyl hydrolase family 36 N-terminal domain YP_1469 PF16874 Glycosyl hydrolase family 36 C-terminal domain YP_1470 PF01306 LacY proton/sugar symporter YP_1471 PF00356 Bacterial regulatory proteins, lacI family YP_1471 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YP_1472 PF06167 Glucose-regulated metallo-peptidase M90 YP_1475 PF00664 ABC transporter transmembrane region YP_1475 PF00005 ABC transporter YP_1478 PF12833 Helix-turn-helix domain YP_1479 PF10964 Protein of unknown function (DUF2766) YP_1480 PF13996 YobH-like protein YP_1481 PF13974 YebO-like protein YP_1484 PF00324 Amino acid permease YP_1485 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YP_1486 PF00313 'Cold-shock' DNA-binding domain YP_1488 PF13847 Methyltransferase domain YP_1490 PF00990 Diguanylate cyclase, GGDEF domain YP_1490 PF13426 PAS domain YP_1490 PF00563 EAL domain YP_1490 PF05231 MASE1 YP_1490 PF08447 PAS fold YP_1490 PF08448 PAS fold YP_1491 PF01695 IstB-like ATP binding protein YP_1492 PF00665 Integrase core domain YP_1492 PF02796 Helix-turn-helix domain of resolvase YP_1497 PF08402 TOBE domain YP_1497 PF00005 ABC transporter YP_1498 PF00528 Binding-protein-dependent transport system inner membrane component YP_1499 PF00528 Binding-protein-dependent transport system inner membrane component YP_1501 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YP_1501 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YP_1503 PF00480 ROK family YP_1520 PF05638 Type VI secretion system effector, Hcp YP_1526 PF01066 CDP-alcohol phosphatidyltransferase YP_1527 PF01541 GIY-YIG catalytic domain YP_1527 PF08459 UvrC Helix-hairpin-helix N-terminal YP_1527 PF02151 UvrB/uvrC motif YP_1528 PF00196 Bacterial regulatory proteins, luxR family YP_1528 PF00072 Response regulator receiver domain YP_1529 PF10769 Protein of unknown function (DUF2594) YP_1530 PF06942 GlpM protein YP_1533 PF13505 Outer membrane protein beta-barrel domain YP_1534 PF00324 Amino acid permease YP_1535 PF01344 Kelch motif YP_1536 PF03358 NADPH-dependent FMN reductase YP_1537 PF04261 Dyp-type peroxidase family YP_1538 PF13473 Cupredoxin-like domain YP_1538 PF09375 Imelysin YP_1539 PF03239 Iron permease FTR1 family YP_1540 PF00474 Sodium:solute symporter family YP_1542 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YP_1542 PF00171 Aldehyde dehydrogenase family YP_1542 PF01619 Proline dehydrogenase YP_1542 PF14850 DNA-binding domain of Proline dehydrogenase YP_1548 PF00291 Pyridoxal-phosphate dependent enzyme YP_1549 PF02899 Phage integrase, N-terminal SAM-like domain YP_1550 PF04545 Sigma-70, region 4 YP_1550 PF04539 Sigma-70 region 3 YP_1550 PF04542 Sigma-70 region 2 YP_1551 PF08884 Flagellin D3 domain YP_1551 PF00700 Bacterial flagellin C-terminal helical region YP_1551 PF00669 Bacterial flagellin N-terminal helical region YP_1552 PF02465 Flagellar hook-associated protein 2 N-terminus YP_1552 PF07195 Flagellar hook-associated protein 2 C-terminus YP_1552 PF07196 Flagellin hook IN motif YP_1553 PF02561 Flagellar protein FliS YP_1554 PF05400 Flagellar protein FliT YP_1556 PF12833 Helix-turn-helix domain YP_1558 PF00730 HhH-GPD superfamily base excision DNA repair protein YP_1561 PF02049 Flagellar hook-basal body complex protein FliE YP_1562 PF01514 Secretory protein of YscJ/FliF family YP_1562 PF08345 Flagellar M-ring protein C-terminal YP_1563 PF14841 FliG middle domain YP_1563 PF01706 FliG C-terminal domain YP_1563 PF14842 FliG N-terminal domain YP_1564 PF02108 Flagellar assembly protein FliH YP_1565 PF18269 T3SS EscN ATPase C-terminal domain YP_1565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YP_1566 PF02050 Flagellar FliJ protein YP_1567 PF02120 Flagellar hook-length control protein FliK YP_1568 PF03748 Flagellar basal body-associated protein FliL YP_1569 PF02154 Flagellar motor switch protein FliM YP_1569 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YP_1570 PF16973 Flagellar motor switch protein FliN N-terminal YP_1570 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YP_1571 PF04347 Flagellar biosynthesis protein, FliO YP_1572 PF00813 FliP family YP_1573 PF01313 Bacterial export proteins, family 3 YP_1574 PF01311 Bacterial export proteins, family 1 YP_1577 PF00294 pfkB family carbohydrate kinase YP_1578 PF02653 Branched-chain amino acid transport system / permease component YP_1579 PF00005 ABC transporter YP_1580 PF13407 Periplasmic binding protein domain YP_1581 PF02653 Branched-chain amino acid transport system / permease component YP_1582 PF00596 Class II Aldolase and Adducin N-terminal domain YP_1583 PF04198 Putative sugar-binding domain YP_1584 PF00669 Bacterial flagellin N-terminal helical region YP_1585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YP_1585 PF00460 Flagella basal body rod protein YP_1586 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YP_1586 PF10135 Rod binding protein YP_1587 PF02119 Flagellar P-ring protein YP_1588 PF02107 Flagellar L-ring protein YP_1589 PF00460 Flagella basal body rod protein YP_1589 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YP_1590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YP_1590 PF00460 Flagella basal body rod protein YP_1591 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YP_1591 PF00460 Flagella basal body rod protein YP_1591 PF07559 Flagellar basal body protein FlaE YP_1592 PF13860 FlgD Ig-like domain YP_1592 PF03963 Flagellar hook capping protein - N-terminal region YP_1592 PF13861 FlgD Tudor-like domain YP_1593 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YP_1593 PF00460 Flagella basal body rod protein YP_1594 PF00460 Flagella basal body rod protein YP_1595 PF17656 FlgA N-terminal domain YP_1595 PF13144 Chaperone for flagella basal body P-ring formation YP_1596 PF04316 Anti-sigma-28 factor, FlgM YP_1597 PF05130 FlgN protein YP_1599 PF01797 Transposase IS200 like YP_1600 PF06366 Flagellar protein FlhE YP_1601 PF00771 FHIPEP family YP_1602 PF01312 FlhB HrpN YscU SpaS Family YP_1606 PF10709 Protein of unknown function (DUF2511) YP_1608 PF04234 CopC domain YP_1610 PF00210 Ferritin-like domain YP_1611 PF06440 DNA polymerase III, theta subunit YP_1612 PF00561 alpha/beta hydrolase fold YP_1613 PF00326 Prolyl oligopeptidase family YP_1613 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YP_1614 PF13995 YebF-like protein YP_1616 PF07130 YebG protein YP_1617 PF00271 Helicase conserved C-terminal domain YP_1617 PF00270 DEAD/DEAH box helicase YP_1617 PF03880 DbpA RNA binding domain YP_1618 PF02222 ATP-grasp domain YP_1619 PF03701 Uncharacterised protein family (UPF0181) YP_1620 PF04715 Anthranilate synthase component I, N terminal region YP_1620 PF00425 chorismate binding enzyme YP_1621 PF00293 NUDIX domain YP_1622 PF03315 Serine dehydratase beta chain YP_1622 PF03313 Serine dehydratase alpha chain YP_1623 PF01613 Flavin reductase like domain YP_1624 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YP_1624 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YP_1625 PF07690 Major Facilitator Superfamily YP_1626 PF03328 HpcH/HpaI aldolase/citrate lyase family YP_1627 PF01557 Fumarylacetoacetate (FAA) hydrolase family YP_1628 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YP_1629 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YP_1630 PF00171 Aldehyde dehydrogenase family YP_1632 PF01047 MarR family YP_1633 PF03471 Transporter associated domain YP_1633 PF03741 Integral membrane protein TerC family YP_1634 PF03830 PTS system sorbose subfamily IIB component YP_1634 PF03610 PTS system fructose IIA component YP_1635 PF03609 PTS system sorbose-specific iic component YP_1636 PF03613 PTS system mannose/fructose/sorbose family IID component YP_1637 PF06173 Protein of unknown function (DUF986) YP_1638 PF02659 Putative manganese efflux pump YP_1641 PF00665 Integrase core domain YP_1641 PF02796 Helix-turn-helix domain of resolvase YP_1642 PF01695 IstB-like ATP binding protein YP_1649 PF07715 TonB-dependent Receptor Plug Domain YP_1649 PF00593 TonB dependent receptor YP_1650 PF00501 AMP-binding enzyme YP_1650 PF13193 AMP-binding enzyme C-terminal domain YP_1651 PF00975 Thioesterase domain YP_1653 PF00668 Condensation domain YP_1653 PF00698 Acyl transferase domain YP_1653 PF00550 Phosphopantetheine attachment site YP_1653 PF16197 Ketoacyl-synthetase C-terminal extension YP_1653 PF00109 Beta-ketoacyl synthase, N-terminal domain YP_1653 PF02801 Beta-ketoacyl synthase, C-terminal domain YP_1654 PF00501 AMP-binding enzyme YP_1654 PF00668 Condensation domain YP_1654 PF08242 Methyltransferase domain YP_1654 PF00550 Phosphopantetheine attachment site YP_1656 PF00005 ABC transporter YP_1656 PF04954 Siderophore-interacting protein YP_1656 PF00664 ABC transporter transmembrane region YP_1656 PF08021 Siderophore-interacting FAD-binding domain YP_1657 PF00005 ABC transporter YP_1657 PF00664 ABC transporter transmembrane region YP_1658 PF07690 Major Facilitator Superfamily YP_1659 PF00425 chorismate binding enzyme YP_1660 PF13356 Arm DNA-binding domain YP_1660 PF00589 Phage integrase family YP_1661 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YP_1661 PF02753 Pili assembly chaperone PapD, C-terminal domain YP_1663 PF00577 Outer membrane usher protein YP_1663 PF13954 PapC N-terminal domain YP_1663 PF13953 PapC C-terminal domain YP_1664 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YP_1664 PF02753 Pili assembly chaperone PapD, C-terminal domain YP_1666 PF00072 Response regulator receiver domain YP_1666 PF00512 His Kinase A (phospho-acceptor) domain YP_1666 PF00989 PAS fold YP_1666 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_1666 PF00497 Bacterial extracellular solute-binding proteins, family 3 YP_1666 PF01627 Hpt domain YP_1667 PF00072 Response regulator receiver domain YP_1667 PF00196 Bacterial regulatory proteins, luxR family YP_1668 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain YP_1668 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain YP_1669 PF01575 MaoC like domain YP_1670 PF03328 HpcH/HpaI aldolase/citrate lyase family YP_1671 PF03466 LysR substrate binding domain YP_1671 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_1675 PF04909 Amidohydrolase YP_1677 PF02508 Rnf-Nqr subunit, membrane protein YP_1678 PF00155 Aminotransferase class I and II YP_1679 PF00324 Amino acid permease YP_1680 PF08220 DeoR-like helix-turn-helix domain YP_1680 PF00455 DeoR C terminal sensor domain YP_1682 PF04960 Glutaminase YP_1685 PF03239 Iron permease FTR1 family YP_1686 PF10634 Fe2+ transport protein YP_1688 PF00005 ABC transporter YP_1688 PF02687 FtsX-like permease family YP_1688 PF12704 MacB-like periplasmic core domain YP_1690 PF12704 MacB-like periplasmic core domain YP_1690 PF02687 FtsX-like permease family YP_1690 PF00005 ABC transporter YP_1691 PF00578 AhpC/TSA family YP_1693 PF03848 Tellurite resistance protein TehB YP_1693 PF09313 Domain of unknown function (DUF1971) YP_1694 PF00557 Metallopeptidase family M24 YP_1696 PF01522 Polysaccharide deacetylase YP_1696 PF14883 Hypothetical glycosyl hydrolase family 13 YP_1697 PF00535 Glycosyl transferase family 2 YP_1698 PF13994 PgaD-like protein YP_1701 PF00872 Transposase, Mutator family YP_1702 PF02562 PhoH-like protein YP_1703 PF01699 Sodium/calcium exchanger protein YP_1704 PF00672 HAMP domain YP_1704 PF07730 Histidine kinase YP_1704 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term YP_1704 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_1705 PF00392 Bacterial regulatory proteins, gntR family YP_1705 PF00155 Aminotransferase class I and II YP_1707 PF00202 Aminotransferase class-III YP_1708 PF04958 Arginine N-succinyltransferase beta subunit YP_1709 PF00171 Aldehyde dehydrogenase family YP_1710 PF04996 Succinylarginine dihydrolase YP_1711 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family YP_1712 PF00267 Gram-negative porin YP_1714 PF01979 Amidohydrolase family YP_1716 PF01695 IstB-like ATP binding protein YP_1717 PF00665 Integrase core domain YP_1717 PF02796 Helix-turn-helix domain of resolvase YP_1719 PF07351 Protein of unknown function (DUF1480) YP_1722 PF02753 Pili assembly chaperone PapD, C-terminal domain YP_1722 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YP_1726 PF02470 MlaD protein YP_1727 PF04403 Paraquat-inducible protein A YP_1728 PF13185 GAF domain YP_1729 PF04352 ProQ/FINO family YP_1729 PF17516 ProQ C-terminal domain YP_1730 PF11818 C-terminal domain of tail specific protease (DUF3340) YP_1730 PF00595 PDZ domain YP_1730 PF03572 Peptidase family S41 YP_1730 PF17804 Tail specific protease N-terminal domain YP_1731 PF01435 Peptidase family M48 YP_1732 PF00419 Fimbrial protein YP_1733 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YP_1733 PF02753 Pili assembly chaperone PapD, C-terminal domain YP_1734 PF00577 Outer membrane usher protein YP_1734 PF13953 PapC C-terminal domain YP_1734 PF13954 PapC N-terminal domain YP_1736 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YP_1736 PF02753 Pili assembly chaperone PapD, C-terminal domain YP_1737 PF07690 Major Facilitator Superfamily YP_1738 PF14583 Oligogalacturonate lyase YP_1739 PF09339 IclR helix-turn-helix domain YP_1739 PF01614 Bacterial transcriptional regulator YP_1740 PF01510 N-acetylmuramoyl-L-alanine amidase YP_1742 PF04307 LexA-binding, inner membrane-associated putative hydrolase YP_1743 PF06178 Oligogalacturonate-specific porin protein (KdgM) YP_1744 PF01547 Bacterial extracellular solute-binding protein YP_1745 PF17912 MalK OB fold domain YP_1745 PF00005 ABC transporter YP_1745 PF03459 TOBE domain YP_1746 PF00528 Binding-protein-dependent transport system inner membrane component YP_1747 PF00528 Binding-protein-dependent transport system inner membrane component YP_1748 PF06917 Periplasmic pectate lyase YP_1750 PF04962 KduI/IolB family YP_1752 PF00872 Transposase, Mutator family YP_1753 PF05433 Glycine zipper 2TM domain YP_1754 PF02559 CarD-like/TRCF domain YP_1754 PF03461 TRCF domain YP_1754 PF00271 Helicase conserved C-terminal domain YP_1754 PF00270 DEAD/DEAH box helicase YP_1754 PF17757 UvrB interaction domain YP_1755 PF02687 FtsX-like permease family YP_1755 PF12704 MacB-like periplasmic core domain YP_1756 PF00005 ABC transporter YP_1757 PF12704 MacB-like periplasmic core domain YP_1757 PF02687 FtsX-like permease family YP_1758 PF00480 ROK family YP_1759 PF00480 ROK family YP_1760 PF02146 Sir2 family YP_1761 PF07687 Peptidase dimerisation domain YP_1761 PF01546 Peptidase family M20/M25/M40 YP_1762 PF08007 Cupin superfamily protein YP_1763 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_1763 PF08918 PhoQ Sensor YP_1764 PF00072 Response regulator receiver domain YP_1764 PF00486 Transcriptional regulatory protein, C terminal YP_1766 PF08328 Adenylosuccinate lyase C-terminal YP_1766 PF00206 Lyase YP_1767 PF04356 Protein of unknown function (DUF489) YP_1769 PF00293 NUDIX domain YP_1770 PF00849 RNA pseudouridylate synthase YP_1771 PF00180 Isocitrate/isopropylmalate dehydrogenase YP_1772 PF00356 Bacterial regulatory proteins, lacI family YP_1772 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YP_1774 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YP_1774 PF08447 PAS fold YP_1775 PF05368 NmrA-like family YP_1776 PF01638 HxlR-like helix-turn-helix YP_1778 PF00328 Histidine phosphatase superfamily (branch 2) YP_1779 PF14001 YdfZ protein YP_1781 PF13404 AsnC-type helix-turn-helix domain YP_1781 PF01037 Lrp/AsnC ligand binding domain YP_1783 PF10777 Inner membrane protein YlaC YP_1784 PF00107 Zinc-binding dehydrogenase YP_1784 PF08659 KR domain YP_1784 PF00550 Phosphopantetheine attachment site YP_1784 PF14765 Polyketide synthase dehydratase YP_1784 PF08240 Alcohol dehydrogenase GroES-like domain YP_1784 PF00698 Acyl transferase domain YP_1784 PF16197 Ketoacyl-synthetase C-terminal extension YP_1784 PF00109 Beta-ketoacyl synthase, N-terminal domain YP_1784 PF02801 Beta-ketoacyl synthase, C-terminal domain YP_1785 PF02929 Beta galactosidase small chain YP_1785 PF16353 Domain of unknown function(DUF4981) YP_1785 PF00703 Glycosyl hydrolases family 2 YP_1785 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YP_1785 PF02837 Glycosyl hydrolases family 2, sugar binding domain YP_1786 PF00313 'Cold-shock' DNA-binding domain YP_1787 PF10781 Dextransucrase DSRB YP_1790 PF02308 MgtC family YP_1791 PF00690 Cation transporter/ATPase, N-terminus YP_1791 PF00689 Cation transporting ATPase, C-terminus YP_1793 PF05280 Flagellar transcriptional activator (FlhC) YP_1794 PF01618 MotA/TolQ/ExbB proton channel family YP_1795 PF13677 Membrane MotB of proton-channel complex MotA/MotB YP_1795 PF00691 OmpA family YP_1796 PF01627 Hpt domain YP_1796 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_1796 PF02895 Signal transducing histidine kinase, homodimeric domain YP_1796 PF09078 CheY binding YP_1796 PF01584 CheW-like domain YP_1797 PF01584 CheW-like domain YP_1798 PF07690 Major Facilitator Superfamily YP_1799 PF01042 Endoribonuclease L-PSP YP_1801 PF13309 HTH domain YP_1801 PF08348 YheO-like PAS domain YP_1802 PF00872 Transposase, Mutator family YP_1803 PF12951 Passenger-associated-transport-repeat YP_1806 PF02203 Tar ligand binding domain homologue YP_1806 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YP_1806 PF00672 HAMP domain YP_1807 PF02203 Tar ligand binding domain homologue YP_1807 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YP_1807 PF00672 HAMP domain YP_1808 PF01739 CheR methyltransferase, SAM binding domain YP_1808 PF03705 CheR methyltransferase, all-alpha domain YP_1809 PF00072 Response regulator receiver domain YP_1809 PF01339 CheB methylesterase YP_1810 PF00072 Response regulator receiver domain YP_1811 PF04344 Chemotaxis phosphatase, CheZ YP_1812 PF01510 N-acetylmuramoyl-L-alanine amidase YP_1815 PF00872 Transposase, Mutator family YP_1821 PF01695 IstB-like ATP binding protein YP_1822 PF02796 Helix-turn-helix domain of resolvase YP_1822 PF00665 Integrase core domain YP_1824 PF01979 Amidohydrolase family YP_1825 PF05962 HutD YP_1828 PF01370 NAD dependent epimerase/dehydratase family YP_1835 PF00872 Transposase, Mutator family YP_1839 PF08242 Methyltransferase domain YP_1847 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_1847 PF00512 His Kinase A (phospho-acceptor) domain YP_1847 PF00672 HAMP domain YP_1848 PF00486 Transcriptional regulatory protein, C terminal YP_1848 PF00072 Response regulator receiver domain YP_1849 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YP_1858 PF06071 Protein of unknown function (DUF933) YP_1858 PF01926 50S ribosome-binding GTPase YP_1859 PF01195 Peptidyl-tRNA hydrolase YP_1860 PF10762 Protein of unknown function (DUF2583) YP_1861 PF14572 Phosphoribosyl synthetase-associated domain YP_1861 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YP_1862 PF00288 GHMP kinases N terminal domain YP_1862 PF08544 GHMP kinases C terminal YP_1863 PF03550 Outer membrane lipoprotein LolB YP_1864 PF01488 Shikimate / quinate 5-dehydrogenase YP_1864 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YP_1864 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YP_1865 PF03462 PCRF domain YP_1865 PF00472 RF-1 domain YP_1866 PF17827 PrmC N-terminal domain YP_1866 PF13847 Methyltransferase domain YP_1867 PF04247 Invasion gene expression up-regulator, SirB YP_1868 PF13369 Transglutaminase-like superfamily YP_1869 PF00793 DAHP synthetase I family YP_1870 PF00916 Sulfate permease family YP_1870 PF01740 STAS domain YP_1872 PF03009 Glycerophosphoryl diester phosphodiesterase family YP_1874 PF00528 Binding-protein-dependent transport system inner membrane component YP_1875 PF00528 Binding-protein-dependent transport system inner membrane component YP_1877 PF01797 Transposase IS200 like YP_1878 PF03009 Glycerophosphoryl diester phosphodiesterase family YP_1879 PF01325 Iron dependent repressor, N-terminal DNA binding domain YP_1879 PF00480 ROK family YP_1880 PF02811 PHP domain YP_1881 PF02613 Nitrate reductase delta subunit YP_1882 PF07273 Protein of unknown function (DUF1439) YP_1883 PF07690 Major Facilitator Superfamily YP_1884 PF13302 Acetyltransferase (GNAT) domain YP_1885 PF04337 Protein of unknown function, DUF480 YP_1886 PF03023 Lipid II flippase MurJ YP_1887 PF08479 POTRA domain, ShlB-type YP_1887 PF17287 POTRA domain YP_1887 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YP_1889 PF00750 tRNA synthetases class I (R) YP_1889 PF05746 DALR anticodon binding domain YP_1889 PF03485 Arginyl tRNA synthetase N terminal domain YP_1890 PF06185 YecM protein YP_1891 PF03932 CutC family YP_1892 PF08003 Protein of unknown function (DUF1698) YP_1893 PF13649 Methyltransferase domain YP_1894 PF01124 MAPEG family YP_1895 PF01904 Protein of unknown function DUF72 YP_1896 PF00152 tRNA synthetases class II (D, K and N) YP_1896 PF01336 OB-fold nucleic acid binding domain YP_1896 PF02938 GAD domain YP_1897 PF00293 NUDIX domain YP_1898 PF01709 Transcriptional regulator YP_1899 PF02075 Crossover junction endodeoxyribonuclease RuvC YP_1900 PF01330 RuvA N terminal domain YP_1900 PF07499 RuvA, C-terminal domain YP_1901 PF05496 Holliday junction DNA helicase RuvB P-loop domain YP_1901 PF17864 RuvB AAA lid domain YP_1901 PF05491 RuvB C-terminal winged helix domain YP_1902 PF00950 ABC 3 transport family YP_1903 PF00005 ABC transporter YP_1904 PF01297 Zinc-uptake complex component A periplasmic YP_1905 PF01476 LysM domain YP_1905 PF01551 Peptidase family M23 YP_1905 PF08525 Opacity-associated protein A N-terminal motif YP_1906 PF03279 Bacterial lipid A biosynthesis acyltransferase YP_1907 PF00224 Pyruvate kinase, barrel domain YP_1907 PF02887 Pyruvate kinase, alpha/beta domain YP_1908 PF01418 Helix-turn-helix domain, rpiR family YP_1908 PF01380 SIS domain YP_1909 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YP_1909 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YP_1910 PF01081 KDPG and KHG aldolase YP_1911 PF00893 Small Multidrug Resistance protein YP_1912 PF00893 Small Multidrug Resistance protein YP_1913 PF01042 Endoribonuclease L-PSP YP_1914 PF04851 Type III restriction enzyme, res subunit YP_1914 PF13307 Helicase C-terminal domain YP_1915 PF00814 Glycoprotease family YP_1916 PF03843 Outer membrane lipoprotein Slp family YP_1917 PF13193 AMP-binding enzyme C-terminal domain YP_1917 PF00501 AMP-binding enzyme YP_1918 PF01612 3'-5' exonuclease YP_1918 PF00570 HRDC domain YP_1919 PF03776 Septum formation topological specificity factor MinE YP_1920 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YP_1921 PF03775 Septum formation inhibitor MinC, C-terminal domain YP_1921 PF05209 Septum formation inhibitor MinC, N-terminal domain YP_1923 PF05166 YcgL domain YP_1924 PF13406 Transglycosylase SLT domain YP_1925 PF01557 Fumarylacetoacetate (FAA) hydrolase family YP_1926 PF03692 Putative zinc- or iron-chelating domain YP_1928 PF00665 Integrase core domain YP_1928 PF02796 Helix-turn-helix domain of resolvase YP_1929 PF01695 IstB-like ATP binding protein YP_1933 PF05772 NinB protein YP_1935 PF06530 Phage antitermination protein Q YP_1939 PF00872 Transposase, Mutator family YP_1941 PF00266 Aminotransferase class-V YP_1944 PF02600 Disulfide bond formation protein DsbB YP_1945 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YP_1946 PF07840 FadR C-terminal domain YP_1946 PF00392 Bacterial regulatory proteins, gntR family YP_1947 PF04293 SpoVR like protein YP_1948 PF01266 FAD dependent oxidoreductase YP_1949 PF07690 Major Facilitator Superfamily YP_1950 PF02678 Pirin YP_1950 PF05726 Pirin C-terminal cupin domain YP_1951 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_1951 PF03466 LysR substrate binding domain YP_1953 PF04285 Protein of unknown function (DUF444) YP_1954 PF06798 PrkA serine protein kinase C-terminal domain YP_1954 PF08298 PrkA AAA domain YP_1955 PF06629 MltA-interacting protein MipA YP_1956 PF01263 Aldose 1-epimerase YP_1957 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YP_1957 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YP_1958 PF01641 SelR domain YP_1959 PF07023 Protein of unknown function (DUF1315) YP_1960 PF00857 Isochorismatase family YP_1961 PF00710 Asparaginase, N-terminal YP_1961 PF17763 Glutaminase/Asparaginase C-terminal domain YP_1962 PF01343 Peptidase family S49 YP_1963 PF00881 Nitroreductase family YP_1964 PF00586 AIR synthase related protein, N-terminal domain YP_1964 PF02769 AIR synthase related protein, C-terminal domain YP_1965 PF01131 DNA topoisomerase YP_1965 PF01751 Toprim domain YP_1966 PF07383 Protein of unknown function (DUF1496) YP_1967 PF00293 NUDIX domain YP_1968 PF03372 Endonuclease/Exonuclease/phosphatase family YP_1969 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_1969 PF03466 LysR substrate binding domain YP_1970 PF01842 ACT domain YP_1970 PF00551 Formyl transferase YP_1971 PF02810 SEC-C motif YP_1972 PF00072 Response regulator receiver domain YP_1973 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YP_1973 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YP_1973 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YP_1974 PF00816 H-NS histone family YP_1975 PF00265 Thymidine kinase YP_1976 PF00465 Iron-containing alcohol dehydrogenase YP_1976 PF00171 Aldehyde dehydrogenase family YP_1978 PF01914 MarC family integral membrane protein YP_1979 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YP_1980 PF00528 Binding-protein-dependent transport system inner membrane component YP_1981 PF00528 Binding-protein-dependent transport system inner membrane component YP_1981 PF12911 N-terminal TM domain of oligopeptide transport permease C YP_1982 PF00005 ABC transporter YP_1982 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YP_1983 PF00005 ABC transporter YP_1983 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YP_1985 PF04269 Protein of unknown function, DUF440 YP_1986 PF13396 Phospholipase_D-nuclease N-terminal YP_1986 PF13091 PLD-like domain YP_1988 PF13505 Outer membrane protein beta-barrel domain YP_1991 PF03795 YCII-related domain YP_1992 PF03544 Gram-negative bacterial TonB protein C-terminal YP_1993 PF00872 Transposase, Mutator family YP_1994 PF03061 Thioesterase superfamily YP_1995 PF04279 Intracellular septation protein A YP_1999 PF03922 OmpW family YP_2001 PF00290 Tryptophan synthase alpha chain YP_2002 PF00291 Pyridoxal-phosphate dependent enzyme YP_2003 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YP_2003 PF00218 Indole-3-glycerol phosphate synthase YP_2004 PF02885 Glycosyl transferase family, helical bundle domain YP_2004 PF00591 Glycosyl transferase family, a/b domain YP_2005 PF00117 Glutamine amidotransferase class-I YP_2006 PF04715 Anthranilate synthase component I, N terminal region YP_2006 PF00425 chorismate binding enzyme YP_2008 PF02811 PHP domain YP_2009 PF01300 Telomere recombination YP_2010 PF00849 RNA pseudouridylate synthase YP_2010 PF01479 S4 domain YP_2011 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_2012 PF00106 short chain dehydrogenase YP_2013 PF08496 Peptidase family S49 N-terminal YP_2013 PF01343 Peptidase family S49 YP_2014 PF10692 Protein of unknown function (DUF2498) YP_2016 PF08272 Topoisomerase I zinc-ribbon-like YP_2016 PF01396 Topoisomerase DNA binding C4 zinc finger YP_2016 PF01751 Toprim domain YP_2016 PF01131 DNA topoisomerase YP_2017 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_2017 PF03466 LysR substrate binding domain YP_2019 PF00694 Aconitase C-terminal domain YP_2019 PF00330 Aconitase family (aconitate hydratase) YP_2020 PF00925 GTP cyclohydrolase II YP_2022 PF01569 PAP2 superfamily YP_2023 PF06305 Lipopolysaccharide assembly protein A domain YP_2024 PF18073 Rubredoxin metal binding domain YP_2026 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YP_2027 PF01253 Translation initiation factor SUI1 YP_2029 PF00596 Class II Aldolase and Adducin N-terminal domain YP_2031 PF00923 Transaldolase/Fructose-6-phosphate aldolase YP_2032 PF04328 Selenoprotein, putative YP_2033 PF13722 5TM C-terminal transporter carbon starvation CstA YP_2033 PF02554 Carbon starvation protein CstA YP_2034 PF08206 Ribonuclease B OB domain YP_2034 PF17876 Cold shock domain YP_2034 PF00575 S1 RNA binding domain YP_2034 PF00773 RNB domain YP_2035 PF07690 Major Facilitator Superfamily YP_2036 PF01370 NAD dependent epimerase/dehydratase family YP_2037 PF10576 Iron-sulfur binding domain of endonuclease III YP_2037 PF00633 Helix-hairpin-helix motif YP_2037 PF00730 HhH-GPD superfamily base excision DNA repair protein YP_2038 PF02508 Rnf-Nqr subunit, membrane protein YP_2039 PF04205 FMN-binding domain YP_2040 PF03116 NQR2, RnfD, RnfE family YP_2041 PF06445 GyrI-like small molecule binding domain YP_2041 PF12833 Helix-turn-helix domain YP_2042 PF13375 RnfC Barrel sandwich hybrid domain YP_2042 PF10531 SLBB domain YP_2042 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YP_2042 PF13237 4Fe-4S dicluster domain YP_2043 PF04060 Putative Fe-S cluster YP_2044 PF02508 Rnf-Nqr subunit, membrane protein YP_2045 PF10754 Protein of unknown function (DUF2569) YP_2048 PF03412 Peptidase C39 family YP_2048 PF00005 ABC transporter YP_2048 PF00664 ABC transporter transmembrane region YP_2049 PF11762 L-arabinose isomerase C-terminal domain YP_2049 PF02610 L-arabinose isomerase YP_2050 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YP_2051 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YP_2052 PF00005 ABC transporter YP_2053 PF02653 Branched-chain amino acid transport system / permease component YP_2055 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YP_2055 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YP_2056 PF13593 SBF-like CPA transporter family (DUF4137) YP_2059 PF06097 Bacterial protein of unknown function (DUF945) YP_2060 PF01238 Phosphomannose isomerase type I YP_2061 PF00206 Lyase YP_2061 PF10415 Fumarase C C-terminus YP_2062 PF05472 DNA replication terminus site-binding protein (Ter protein) YP_2064 PF00480 ROK family YP_2066 PF00654 Voltage gated chloride channel YP_2067 PF00356 Bacterial regulatory proteins, lacI family YP_2071 PF09084 NMT1/THI5 like YP_2072 PF00528 Binding-protein-dependent transport system inner membrane component YP_2073 PF00005 ABC transporter YP_2074 PF01048 Phosphorylase superfamily YP_2074 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YP_2079 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YP_2079 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_2079 PF00205 Thiamine pyrophosphate enzyme, central domain YP_2080 PF01842 ACT domain YP_2081 PF13419 Haloacid dehalogenase-like hydrolase YP_2083 PF00245 Alkaline phosphatase YP_2084 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YP_2084 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YP_2085 PF13545 Crp-like helix-turn-helix domain YP_2085 PF00027 Cyclic nucleotide-binding domain YP_2086 PF00582 Universal stress protein family YP_2087 PF02233 NAD(P) transhydrogenase beta subunit YP_2088 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YP_2088 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YP_2088 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YP_2090 PF07338 Protein of unknown function (DUF1471) YP_2091 PF13520 Amino acid permease YP_2093 PF00072 Response regulator receiver domain YP_2093 PF00486 Transcriptional regulatory protein, C terminal YP_2095 PF02796 Helix-turn-helix domain of resolvase YP_2095 PF00665 Integrase core domain YP_2096 PF01695 IstB-like ATP binding protein YP_2097 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YP_2098 PF01797 Transposase IS200 like YP_2099 PF14431 YwqJ-like deaminase YP_2099 PF18807 Tripartite Tc toxins repeat YP_2102 PF04264 YceI-like domain YP_2103 PF01292 Prokaryotic cytochrome b561 YP_2106 PF00089 Trypsin YP_2109 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YP_2109 PF11898 Domain of unknown function (DUF3418) YP_2109 PF04408 Helicase associated domain (HA2) YP_2109 PF00270 DEAD/DEAH box helicase YP_2109 PF00271 Helicase conserved C-terminal domain YP_2110 PF02525 Flavodoxin-like fold YP_2111 PF00325 Bacterial regulatory proteins, crp family YP_2111 PF04198 Putative sugar-binding domain YP_2112 PF01232 Mannitol dehydrogenase Rossmann domain YP_2112 PF08125 Mannitol dehydrogenase C-terminal domain YP_2113 PF07027 Protein of unknown function (DUF1318) YP_2114 PF11739 Dicarboxylate transport YP_2115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YP_2115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_2116 PF03724 META domain YP_2117 PF03891 Domain of unknown function (DUF333) YP_2118 PF02308 MgtC family YP_2119 PF00893 Small Multidrug Resistance protein YP_2120 PF10371 Domain of unknown function YP_2120 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YP_2120 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YP_2120 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YP_2120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_2121 PF01171 PP-loop family YP_2122 PF07859 alpha/beta hydrolase fold YP_2122 PF13472 GDSL-like Lipase/Acylhydrolase family YP_2125 PF01544 CorA-like Mg2+ transporter protein YP_2126 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YP_2127 PF00246 Zinc carboxypeptidase YP_2128 PF13378 Enolase C-terminal domain-like YP_2128 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YP_2129 PF08534 Redoxin YP_2130 PF01797 Transposase IS200 like YP_2131 PF00158 Sigma-54 interaction domain YP_2131 PF18024 Helix-turn-helix domain YP_2134 PF05128 Domain of unknown function (DUF697) YP_2135 PF04317 YcjX-like family, DUF463 YP_2137 PF04024 PspC domain YP_2138 PF06667 Phage shock protein B YP_2139 PF04012 PspA/IM30 family YP_2140 PF00158 Sigma-54 interaction domain YP_2140 PF02954 Bacterial regulatory protein, Fis family YP_2141 PF01797 Transposase IS200 like YP_2144 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YP_2145 PF00528 Binding-protein-dependent transport system inner membrane component YP_2146 PF00528 Binding-protein-dependent transport system inner membrane component YP_2146 PF12911 N-terminal TM domain of oligopeptide transport permease C YP_2147 PF00005 ABC transporter YP_2147 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YP_2148 PF00005 ABC transporter YP_2150 PF00854 POT family YP_2151 PF04893 Yip1 domain YP_2152 PF11656 YjbD family (DUF3811) YP_2153 PF00043 Glutathione S-transferase, C-terminal domain YP_2153 PF02798 Glutathione S-transferase, N-terminal domain YP_2154 PF08543 Phosphomethylpyrimidine kinase YP_2155 PF00579 tRNA synthetases class I (W and Y) YP_2155 PF01479 S4 domain YP_2156 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YP_2156 PF01243 Pyridoxamine 5'-phosphate oxidase YP_2157 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YP_2158 PF03702 Anhydro-N-acetylmuramic acid kinase YP_2159 PF05433 Glycine zipper 2TM domain YP_2160 PF01047 MarR family YP_2161 PF00248 Aldo/keto reductase family YP_2162 PF06945 Protein of unknown function (DUF1289) YP_2163 PF00884 Sulfatase YP_2163 PF08019 Phosphoethanolamine transferase EptA/EptB YP_2164 PF16925 Tetracyclin repressor-like, C-terminal domain YP_2164 PF00440 Bacterial regulatory proteins, tetR family YP_2165 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YP_2166 PF14431 YwqJ-like deaminase YP_2166 PF18807 Tripartite Tc toxins repeat YP_2167 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_2168 PF00929 Exonuclease YP_2169 PF00462 Glutaredoxin YP_2171 PF00877 NlpC/P60 family YP_2172 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YP_2172 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YP_2173 PF00356 Bacterial regulatory proteins, lacI family YP_2174 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_2174 PF03466 LysR substrate binding domain YP_2175 PF07690 Major Facilitator Superfamily YP_2177 PF00677 Lumazine binding domain YP_2179 PF01554 MatE YP_2180 PF00224 Pyruvate kinase, barrel domain YP_2180 PF02887 Pyruvate kinase, alpha/beta domain YP_2181 PF04728 Lipoprotein leucine-zipper YP_2182 PF01797 Transposase IS200 like YP_2184 PF00665 Integrase core domain YP_2184 PF02796 Helix-turn-helix domain of resolvase YP_2185 PF01695 IstB-like ATP binding protein YP_2186 PF02657 Fe-S metabolism associated domain YP_2187 PF00266 Aminotransferase class-V YP_2188 PF01458 Uncharacterized protein family (UPF0051) YP_2189 PF00005 ABC transporter YP_2190 PF01458 Uncharacterized protein family (UPF0051) YP_2191 PF01521 Iron-sulphur cluster biosynthesis YP_2193 PF03061 Thioesterase superfamily YP_2194 PF02913 FAD linked oxidases, C-terminal domain YP_2194 PF13183 4Fe-4S dicluster domain YP_2194 PF01565 FAD binding domain YP_2195 PF01594 AI-2E family transporter YP_2196 PF00391 PEP-utilising enzyme, mobile domain YP_2196 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YP_2196 PF02896 PEP-utilising enzyme, TIM barrel domain YP_2197 PF03618 Kinase/pyrophosphorylase YP_2198 PF00793 DAHP synthetase I family YP_2200 PF03099 Biotin/lipoate A/B protein ligase family YP_2200 PF10437 Bacterial lipoate protein ligase C-terminus YP_2201 PF00877 NlpC/P60 family YP_2204 PF00892 EamA-like transporter family YP_2205 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YP_2206 PF01522 Polysaccharide deacetylase YP_2207 PF01370 NAD dependent epimerase/dehydratase family YP_2207 PF00551 Formyl transferase YP_2207 PF02911 Formyl transferase, C-terminal domain YP_2208 PF00535 Glycosyl transferase family 2 YP_2209 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YP_2210 PF00005 ABC transporter YP_2211 PF00255 Glutathione peroxidase YP_2212 PF01032 FecCD transport family YP_2214 PF00216 Bacterial DNA-binding protein YP_2215 PF03483 B3/4 domain YP_2215 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YP_2215 PF01588 Putative tRNA binding domain YP_2215 PF03147 Ferredoxin-fold anticodon binding domain YP_2215 PF03484 tRNA synthetase B5 domain YP_2216 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YP_2216 PF01409 tRNA synthetases class II core domain (F) YP_2218 PF00453 Ribosomal protein L20 YP_2219 PF01632 Ribosomal protein L35 YP_2220 PF00707 Translation initiation factor IF-3, C-terminal domain YP_2220 PF05198 Translation initiation factor IF-3, N-terminal domain YP_2221 PF02824 TGS domain YP_2221 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YP_2221 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YP_2221 PF03129 Anticodon binding domain YP_2222 PF13619 KTSC domain YP_2225 PF01914 MarC family integral membrane protein YP_2226 PF01464 Transglycosylase SLT domain YP_2227 PF01297 Zinc-uptake complex component A periplasmic YP_2228 PF00005 ABC transporter YP_2229 PF00950 ABC 3 transport family YP_2230 PF00950 ABC 3 transport family YP_2232 PF14002 YniB-like protein YP_2233 PF13419 Haloacid dehalogenase-like hydrolase YP_2234 PF00872 Transposase, Mutator family YP_2237 PF07992 Pyridine nucleotide-disulphide oxidoreductase YP_2238 PF05728 Uncharacterised protein family (UPF0227) YP_2239 PF00933 Glycosyl hydrolase family 3 N terminal domain YP_2240 PF01636 Phosphotransferase enzyme family YP_2241 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YP_2241 PF13036 Peptidoglycan-synthase activator LpoB YP_2242 PF07233 Protein of unknown function (DUF1425) YP_2243 PF01230 HIT domain YP_2244 PF08501 Shikimate dehydrogenase substrate binding domain YP_2245 PF01797 Transposase IS200 like YP_2246 PF00367 phosphotransferase system, EIIB YP_2246 PF02378 Phosphotransferase system, EIIC YP_2247 PF01026 TatD related DNase YP_2248 PF09115 DNA polymerase III, delta subunit, C terminal YP_2249 PF02223 Thymidylate kinase YP_2250 PF02618 YceG-like family YP_2251 PF01063 Amino-transferase class IV YP_2252 PF01797 Transposase IS200 like YP_2253 PF00109 Beta-ketoacyl synthase, N-terminal domain YP_2253 PF02801 Beta-ketoacyl synthase, C-terminal domain YP_2254 PF00550 Phosphopantetheine attachment site YP_2256 PF00698 Acyl transferase domain YP_2257 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_2257 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YP_2258 PF02504 Fatty acid synthesis protein YP_2259 PF01783 Ribosomal L32p protein family YP_2260 PF02620 Large ribosomal RNA subunit accumulation protein YceD YP_2261 PF02545 Maf-like protein YP_2262 PF01479 S4 domain YP_2262 PF00849 RNA pseudouridylate synthase YP_2263 PF12111 Polyribonucleotide phosphorylase C terminal YP_2263 PF10150 Ribonuclease E/G family YP_2263 PF00575 S1 RNA binding domain YP_2265 PF01979 Amidohydrolase family YP_2266 PF06183 DinI-like family YP_2267 PF00872 Transposase, Mutator family YP_2268 PF01266 FAD dependent oxidoreductase YP_2269 PF00196 Bacterial regulatory proteins, luxR family YP_2270 PF01594 AI-2E family transporter YP_2275 PF00765 Autoinducer synthase YP_2276 PF00196 Bacterial regulatory proteins, luxR family YP_2276 PF03472 Autoinducer binding domain YP_2277 PF03466 LysR substrate binding domain YP_2277 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_2278 PF00083 Sugar (and other) transporter YP_2280 PF00248 Aldo/keto reductase family YP_2281 PF09618 CRISPR-associated protein (Cas_Csy4) YP_2282 PF09615 CRISPR-associated protein (Cas_Csy3) YP_2283 PF09614 CRISPR-associated protein (Cas_Csy2) YP_2284 PF09611 CRISPR-associated protein (Cas_Csy1) YP_2287 PF01867 CRISPR associated protein Cas1 YP_2288 PF00924 Mechanosensitive ion channel YP_2293 PF04041 beta-1,4-mannooligosaccharide phosphorylase YP_2294 PF00528 Binding-protein-dependent transport system inner membrane component YP_2295 PF00528 Binding-protein-dependent transport system inner membrane component YP_2297 PF00356 Bacterial regulatory proteins, lacI family YP_2298 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YP_2298 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_2298 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YP_2298 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YP_2299 PF17912 MalK OB fold domain YP_2299 PF00005 ABC transporter YP_2301 PF13332 Hemagglutinin repeat YP_2301 PF05594 Haemagluttinin repeat YP_2301 PF15526 Novel toxin 21 YP_2301 PF04829 Pre-toxin domain with VENN motif YP_2301 PF05860 haemagglutination activity domain YP_2305 PF04829 Pre-toxin domain with VENN motif YP_2305 PF13332 Hemagglutinin repeat YP_2305 PF05860 haemagglutination activity domain YP_2305 PF13018 Extended Signal Peptide of Type V secretion system YP_2306 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YP_2306 PF08479 POTRA domain, ShlB-type YP_2306 PF17287 POTRA domain YP_2307 PF00175 Oxidoreductase NAD-binding domain YP_2307 PF00970 Oxidoreductase FAD-binding domain YP_2307 PF00111 2Fe-2S iron-sulfur cluster binding domain YP_2308 PF00355 Rieske [2Fe-2S] domain YP_2308 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YP_2309 PF02028 BCCT, betaine/carnitine/choline family transporter YP_2311 PF00180 Isocitrate/isopropylmalate dehydrogenase YP_2312 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_2312 PF03466 LysR substrate binding domain YP_2313 PF00356 Bacterial regulatory proteins, lacI family YP_2314 PF02653 Branched-chain amino acid transport system / permease component YP_2315 PF00005 ABC transporter YP_2316 PF13407 Periplasmic binding protein domain YP_2317 PF08240 Alcohol dehydrogenase GroES-like domain YP_2317 PF00107 Zinc-binding dehydrogenase YP_2321 PF13505 Outer membrane protein beta-barrel domain YP_2322 PF00892 EamA-like transporter family YP_2324 PF13649 Methyltransferase domain YP_2325 PF00210 Ferritin-like domain YP_2327 PF00497 Bacterial extracellular solute-binding proteins, family 3 YP_2328 PF00528 Binding-protein-dependent transport system inner membrane component YP_2329 PF00005 ABC transporter YP_2330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YP_2330 PF08447 PAS fold YP_2330 PF13426 PAS domain YP_2331 PF05971 RNA methyltransferase YP_2332 PF07338 Protein of unknown function (DUF1471) YP_2333 PF02885 Glycosyl transferase family, helical bundle domain YP_2334 PF13193 AMP-binding enzyme C-terminal domain YP_2334 PF00501 AMP-binding enzyme YP_2335 PF13378 Enolase C-terminal domain-like YP_2336 PF00378 Enoyl-CoA hydratase/isomerase YP_2337 PF12697 Alpha/beta hydrolase family YP_2338 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YP_2338 PF16582 Middle domain of thiamine pyrophosphate YP_2338 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_2339 PF00425 chorismate binding enzyme YP_2341 PF05957 Bacterial protein of unknown function (DUF883) YP_2344 PF00920 Dehydratase family YP_2346 PF07690 Major Facilitator Superfamily YP_2347 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_2347 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YP_2348 PF00356 Bacterial regulatory proteins, lacI family YP_2350 PF00106 short chain dehydrogenase YP_2351 PF01202 Shikimate kinase YP_2352 PF04074 YhcH/YjgK/YiaL YP_2354 PF00361 Proton-conducting membrane transporter YP_2355 PF00361 Proton-conducting membrane transporter YP_2356 PF00361 Proton-conducting membrane transporter YP_2356 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YP_2357 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YP_2358 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_2359 PF12838 4Fe-4S dicluster domain YP_2360 PF00146 NADH dehydrogenase YP_2361 PF00384 Molybdopterin oxidoreductase YP_2361 PF01568 Molydopterin dinucleotide binding domain YP_2361 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YP_2361 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YP_2362 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YP_2362 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YP_2362 PF10531 SLBB domain YP_2364 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YP_2364 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YP_2365 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YP_2366 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YP_2367 PF03466 LysR substrate binding domain YP_2367 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_2369 PF00155 Aminotransferase class I and II YP_2372 PF02080 TrkA-C domain YP_2372 PF03600 Citrate transporter YP_2373 PF13419 Haloacid dehalogenase-like hydrolase YP_2374 PF03887 YfbU domain YP_2375 PF04217 Protein of unknown function, DUF412 YP_2377 PF00871 Acetokinase family YP_2378 PF01515 Phosphate acetyl/butaryl transferase YP_2378 PF07085 DRTGG domain YP_2379 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YP_2379 PF00356 Bacterial regulatory proteins, lacI family YP_2380 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YP_2382 PF03611 PTS system sugar-specific permease component YP_2383 PF00293 NUDIX domain YP_2384 PF12850 Calcineurin-like phosphoesterase superfamily domain YP_2386 PF01370 NAD dependent epimerase/dehydratase family YP_2386 PF08338 Domain of unknown function (DUF1731) YP_2387 PF00005 ABC transporter YP_2388 PF00528 Binding-protein-dependent transport system inner membrane component YP_2389 PF00528 Binding-protein-dependent transport system inner membrane component YP_2390 PF00497 Bacterial extracellular solute-binding proteins, family 3 YP_2391 PF02441 Flavoprotein YP_2392 PF00156 Phosphoribosyl transferase domain YP_2393 PF02674 Colicin V production protein YP_2394 PF05036 Sporulation related domain YP_2395 PF08245 Mur ligase middle domain YP_2395 PF02875 Mur ligase family, glutamate ligase domain YP_2396 PF01039 Carboxyl transferase domain YP_2396 PF17848 Acetyl-coA carboxylase zinc finger domain YP_2397 PF09335 SNARE associated Golgi protein YP_2398 PF01416 tRNA pseudouridine synthase YP_2399 PF01118 Semialdehyde dehydrogenase, NAD binding domain YP_2399 PF02774 Semialdehyde dehydrogenase, dimerisation domain YP_2400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YP_2400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_2400 PF11890 Domain of unknown function (DUF3410) YP_2402 PF00892 EamA-like transporter family YP_2404 PF00419 Fimbrial protein YP_2405 PF01177 Asp/Glu/Hydantoin racemase YP_2406 PF02801 Beta-ketoacyl synthase, C-terminal domain YP_2406 PF00109 Beta-ketoacyl synthase, N-terminal domain YP_2407 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YP_2407 PF01266 FAD dependent oxidoreductase YP_2408 PF08891 YfcL protein YP_2409 PF04315 Elongation factor P hydroxylase YP_2410 PF01925 Sulfite exporter TauE/SafE YP_2411 PF03411 Penicillin-insensitive murein endopeptidase YP_2412 PF01264 Chorismate synthase YP_2413 PF05175 Methyltransferase small domain YP_2414 PF01713 Smr domain YP_2416 PF00300 Histidine phosphatase superfamily (branch 1) YP_2417 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_2417 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YP_2417 PF00378 Enoyl-CoA hydratase/isomerase YP_2418 PF00108 Thiolase, N-terminal domain YP_2418 PF02803 Thiolase, C-terminal domain YP_2419 PF04175 Protein of unknown function (DUF406) YP_2420 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YP_2421 PF04333 MlaA lipoprotein YP_2422 PF03918 Cytochrome C biogenesis protein YP_2423 PF03918 Cytochrome C biogenesis protein YP_2424 PF08534 Redoxin YP_2425 PF01578 Cytochrome C assembly protein YP_2425 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YP_2426 PF03100 CcmE YP_2427 PF04995 Heme exporter protein D (CcmD) YP_2428 PF01578 Cytochrome C assembly protein YP_2429 PF03379 CcmB protein YP_2430 PF00005 ABC transporter YP_2432 PF04011 LemA family YP_2434 PF08274 PhnA Zinc-Ribbon YP_2434 PF03831 PhnA domain YP_2436 PF00872 Transposase, Mutator family YP_2441 PF04717 Type VI secretion system, phage-baseplate injector YP_2444 PF01695 IstB-like ATP binding protein YP_2445 PF02796 Helix-turn-helix domain of resolvase YP_2445 PF00665 Integrase core domain YP_2447 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YP_2448 PF00528 Binding-protein-dependent transport system inner membrane component YP_2449 PF00005 ABC transporter YP_2449 PF00571 CBS domain YP_2450 PF00268 Ribonucleotide reductase, small chain YP_2451 PF02867 Ribonucleotide reductase, barrel domain YP_2451 PF00317 Ribonucleotide reductase, all-alpha domain YP_2451 PF08343 Ribonucleotide reductase N-terminal YP_2452 PF07972 NrdI Flavodoxin like YP_2455 PF09400 Protein of unknown function (DUF2002) YP_2457 PF00872 Transposase, Mutator family YP_2458 PF06711 Protein of unknown function (DUF1198) YP_2460 PF00313 'Cold-shock' DNA-binding domain YP_2461 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YP_2462 PF00528 Binding-protein-dependent transport system inner membrane component YP_2463 PF00528 Binding-protein-dependent transport system inner membrane component YP_2463 PF12911 N-terminal TM domain of oligopeptide transport permease C YP_2464 PF00005 ABC transporter YP_2465 PF00005 ABC transporter YP_2466 PF00547 Urease, gamma subunit YP_2467 PF00699 Urease beta subunit YP_2468 PF01979 Amidohydrolase family YP_2468 PF00449 Urease alpha-subunit, N-terminal domain YP_2469 PF02814 UreE urease accessory protein, N-terminal domain YP_2469 PF05194 UreE urease accessory protein, C-terminal domain YP_2470 PF01730 UreF YP_2471 PF02492 CobW/HypB/UreG, nucleotide-binding domain YP_2473 PF03253 Urea transporter YP_2474 PF03824 High-affinity nickel-transport protein YP_2475 PF06411 HdeA/HdeB family YP_2476 PF02254 TrkA-N domain YP_2476 PF07885 Ion channel YP_2477 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YP_2478 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YP_2480 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YP_2481 PF02378 Phosphotransferase system, EIIC YP_2482 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YP_2483 PF12833 Helix-turn-helix domain YP_2483 PF07883 Cupin domain YP_2484 PF04794 YdjC-like protein YP_2487 PF03925 SeqA protein C-terminal domain YP_2487 PF17206 SeqA protein N-terminal domain YP_2488 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YP_2488 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YP_2488 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_2488 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YP_2491 PF00486 Transcriptional regulatory protein, C terminal YP_2491 PF00072 Response regulator receiver domain YP_2492 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_2492 PF00512 His Kinase A (phospho-acceptor) domain YP_2492 PF02702 Osmosensitive K+ channel His kinase sensor domain YP_2492 PF13492 GAF domain YP_2492 PF13493 Domain of unknown function (DUF4118) YP_2493 PF02669 K+-transporting ATPase, c chain YP_2495 PF03814 Potassium-transporting ATPase A subunit YP_2496 PF10725 Protein of unknown function (DUF2517) YP_2498 PF08349 Protein of unknown function (DUF1722) YP_2499 PF00875 DNA photolyase YP_2499 PF03441 FAD binding domain of DNA photolyase YP_2500 PF02112 cAMP phosphodiesterases class-II YP_2501 PF01784 NIF3 (NGG1p interacting factor 3) YP_2503 PF02626 Carboxyltransferase domain, subdomain A and B YP_2504 PF03746 LamB/YcsF family YP_2507 PF01470 Pyroglutamyl peptidase YP_2508 PF03167 Uracil DNA glycosylase superfamily YP_2509 PF01228 Glycine radical YP_2511 PF12796 Ankyrin repeats (3 copies) YP_2512 PF00270 DEAD/DEAH box helicase YP_2512 PF00271 Helicase conserved C-terminal domain YP_2513 PF05175 Methyltransferase small domain YP_2514 PF02910 Fumarate reductase flavoprotein C-term YP_2514 PF00890 FAD binding domain YP_2515 PF08281 Sigma-70, region 4 YP_2515 PF04542 Sigma-70 region 2 YP_2516 PF03872 Anti sigma-E protein RseA, N-terminal domain YP_2516 PF03873 Anti sigma-E protein RseA, C-terminal domain YP_2517 PF03888 MucB/RseB N-terminal domain YP_2517 PF17188 MucB/RseB C-terminal domain YP_2520 PF03144 Elongation factor Tu domain 2 YP_2520 PF00009 Elongation factor Tu GTP binding domain YP_2520 PF00679 Elongation factor G C-terminus YP_2520 PF06421 GTP-binding protein LepA C-terminus YP_2521 PF10502 Signal peptidase, peptidase S26 YP_2522 PF00035 Double-stranded RNA binding motif YP_2522 PF14622 Ribonuclease-III-like YP_2523 PF01926 50S ribosome-binding GTPase YP_2523 PF07650 KH domain YP_2524 PF11967 Recombination protein O N terminal YP_2524 PF02565 Recombination protein O C terminal YP_2525 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YP_2526 PF01648 4'-phosphopantetheinyl transferase superfamily YP_2527 PF01797 Transposase IS200 like YP_2528 PF12838 4Fe-4S dicluster domain YP_2530 PF00665 Integrase core domain YP_2530 PF02796 Helix-turn-helix domain of resolvase YP_2531 PF01695 IstB-like ATP binding protein YP_2532 PF01380 SIS domain YP_2534 PF14437 MafB19-like deaminase YP_2535 PF01464 Transglycosylase SLT domain YP_2535 PF00497 Bacterial extracellular solute-binding proteins, family 3 YP_2536 PF02769 AIR synthase related protein, C-terminal domain YP_2536 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YP_2536 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YP_2540 PF01797 Transposase IS200 like YP_2541 PF00512 His Kinase A (phospho-acceptor) domain YP_2541 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_2542 PF13942 YfhG lipoprotein YP_2543 PF00158 Sigma-54 interaction domain YP_2543 PF00072 Response regulator receiver domain YP_2544 PF02540 NAD synthase YP_2544 PF00795 Carbon-nitrogen hydrolase YP_2545 PF00543 Nitrogen regulatory protein P-II YP_2547 PF00175 Oxidoreductase NAD-binding domain YP_2547 PF00970 Oxidoreductase FAD-binding domain YP_2547 PF00042 Globin YP_2548 PF00464 Serine hydroxymethyltransferase YP_2550 PF13505 Outer membrane protein beta-barrel domain YP_2551 PF12832 MFS_1 like family YP_2552 PF00874 PRD domain YP_2553 PF06226 Protein of unknown function (DUF1007) YP_2554 PF03824 High-affinity nickel-transport protein YP_2555 PF00459 Inositol monophosphatase family YP_2556 PF00588 SpoU rRNA Methylase family YP_2557 PF02082 Transcriptional regulator YP_2558 PF00266 Aminotransferase class-V YP_2559 PF01592 NifU-like N terminal domain YP_2560 PF01521 Iron-sulphur cluster biosynthesis YP_2562 PF00226 DnaJ domain YP_2562 PF07743 HSCB C-terminal oligomerisation domain YP_2563 PF00012 Hsp70 protein YP_2564 PF00111 2Fe-2S iron-sulfur cluster binding domain YP_2565 PF04384 Iron-sulphur cluster assembly YP_2566 PF12404 Peptidase YP_2566 PF00883 Cytosol aminopeptidase family, catalytic domain YP_2567 PF14581 SseB protein C-terminal domain YP_2567 PF07179 SseB protein N-terminal domain YP_2569 PF00872 Transposase, Mutator family YP_2571 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YP_2571 PF02753 Pili assembly chaperone PapD, C-terminal domain YP_2572 PF16970 Type-1 fimbrial protein, A YP_2573 PF10431 C-terminal, D2-small domain, of ClpB protein YP_2573 PF17871 AAA lid domain YP_2573 PF00004 ATPase family associated with various cellular activities (AAA) YP_2573 PF07724 AAA domain (Cdc48 subfamily) YP_2583 PF13406 Transglycosylase SLT domain YP_2585 PF00528 Binding-protein-dependent transport system inner membrane component YP_2586 PF00005 ABC transporter YP_2588 PF05638 Type VI secretion system effector, Hcp YP_2590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YP_2590 PF01568 Molydopterin dinucleotide binding domain YP_2590 PF00384 Molybdopterin oxidoreductase YP_2591 PF12800 4Fe-4S binding domain YP_2591 PF13247 4Fe-4S dicluster domain YP_2592 PF04976 DMSO reductase anchor subunit (DmsC) YP_2593 PF02613 Nitrate reductase delta subunit YP_2595 PF05643 Putative bacterial lipoprotein (DUF799) YP_2597 PF03783 Curli production assembly/transport component CsgG YP_2599 PF01292 Prokaryotic cytochrome b561 YP_2600 PF00155 Aminotransferase class I and II YP_2601 PF07350 Protein of unknown function (DUF1479) YP_2602 PF02685 Glucokinase YP_2604 PF03466 LysR substrate binding domain YP_2604 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_2605 PF00248 Aldo/keto reductase family YP_2607 PF01566 Natural resistance-associated macrophage protein YP_2608 PF07670 Nucleoside recognition YP_2608 PF07662 Na+ dependent nucleoside transporter C-terminus YP_2608 PF01773 Na+ dependent nucleoside transporter N-terminus YP_2609 PF00749 tRNA synthetases class I (E and Q), catalytic domain YP_2613 PF12843 Putative quorum-sensing-regulated virulence factor YP_2614 PF00533 BRCA1 C Terminus (BRCT) domain YP_2614 PF01653 NAD-dependent DNA ligase adenylation domain YP_2614 PF03120 NAD-dependent DNA ligase OB-fold domain YP_2614 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YP_2614 PF12826 Helix-hairpin-helix motif YP_2615 PF04354 ZipA, C-terminal FtsZ-binding domain YP_2617 PF00291 Pyridoxal-phosphate dependent enzyme YP_2618 PF00381 PTS HPr component phosphorylation site YP_2619 PF02896 PEP-utilising enzyme, TIM barrel domain YP_2619 PF00391 PEP-utilising enzyme, mobile domain YP_2619 PF05524 PEP-utilising enzyme, N-terminal YP_2620 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YP_2621 PF01797 Transposase IS200 like YP_2622 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_2622 PF00512 His Kinase A (phospho-acceptor) domain YP_2622 PF16527 Two-component sensor protein CpxA, periplasmic domain YP_2622 PF00672 HAMP domain YP_2623 PF00072 Response regulator receiver domain YP_2623 PF00486 Transcriptional regulatory protein, C terminal YP_2624 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YP_2625 PF02687 FtsX-like permease family YP_2625 PF00005 ABC transporter YP_2625 PF12704 MacB-like periplasmic core domain YP_2626 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_2626 PF07992 Pyridine nucleotide-disulphide oxidoreductase YP_2627 PF00474 Sodium:solute symporter family YP_2630 PF00155 Aminotransferase class I and II YP_2632 PF00512 His Kinase A (phospho-acceptor) domain YP_2632 PF00672 HAMP domain YP_2632 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_2633 PF00072 Response regulator receiver domain YP_2633 PF00486 Transcriptional regulatory protein, C terminal YP_2635 PF00291 Pyridoxal-phosphate dependent enzyme YP_2636 PF00005 ABC transporter YP_2637 PF00528 Binding-protein-dependent transport system inner membrane component YP_2638 PF00528 Binding-protein-dependent transport system inner membrane component YP_2640 PF07690 Major Facilitator Superfamily YP_2641 PF01418 Helix-turn-helix domain, rpiR family YP_2641 PF01380 SIS domain YP_2643 PF04074 YhcH/YjgK/YiaL YP_2644 PF00480 ROK family YP_2645 PF12468 Type III secretion system leucine rich repeat protein YP_2646 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YP_2647 PF00701 Dihydrodipicolinate synthetase family YP_2648 PF04261 Dyp-type peroxidase family YP_2649 PF06572 Protein of unknown function (DUF1131) YP_2650 PF04076 Bacterial OB fold (BOF) protein YP_2651 PF16168 Adhesin of bacterial autotransporter system, probable stalk YP_2651 PF03212 Pertactin YP_2651 PF13018 Extended Signal Peptide of Type V secretion system YP_2651 PF03797 Autotransporter beta-domain YP_2654 PF00583 Acetyltransferase (GNAT) family YP_2655 PF01218 Coproporphyrinogen III oxidase YP_2656 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YP_2657 PF00390 Malic enzyme, N-terminal domain YP_2657 PF01515 Phosphate acetyl/butaryl transferase YP_2657 PF03949 Malic enzyme, NAD binding domain YP_2658 PF00293 NUDIX domain YP_2659 PF03264 NapC/NirT cytochrome c family, N-terminal region YP_2660 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YP_2661 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YP_2661 PF00384 Molybdopterin oxidoreductase YP_2661 PF10518 TAT (twin-arginine translocation) pathway signal sequence YP_2661 PF01568 Molydopterin dinucleotide binding domain YP_2662 PF03927 NapD protein YP_2663 PF13187 4Fe-4S dicluster domain YP_2663 PF12800 4Fe-4S binding domain YP_2663 PF00037 4Fe-4S binding domain YP_2664 PF00196 Bacterial regulatory proteins, luxR family YP_2664 PF00072 Response regulator receiver domain YP_2666 PF00873 AcrB/AcrD/AcrF family YP_2668 PF04307 LexA-binding, inner membrane-associated putative hydrolase YP_2670 PF00005 ABC transporter YP_2670 PF08402 TOBE domain YP_2674 PF03960 ArsC family YP_2675 PF01546 Peptidase family M20/M25/M40 YP_2675 PF07687 Peptidase dimerisation domain YP_2676 PF02557 D-alanyl-D-alanine carboxypeptidase YP_2677 PF13980 Uncharacterised protein family (UPF0370) YP_2678 PF08351 Domain of unknown function (DUF1726) YP_2678 PF17176 tRNA-binding domain YP_2678 PF05127 Helicase YP_2678 PF13718 GNAT acetyltransferase 2 YP_2679 PF04284 Protein of unknown function (DUF441) YP_2680 PF04228 Putative neutral zinc metallopeptidase YP_2681 PF01259 SAICAR synthetase YP_2682 PF01797 Transposase IS200 like YP_2683 PF06804 NlpB/DapX lipoprotein YP_2684 PF00701 Dihydrodipicolinate synthetase family YP_2685 PF01842 ACT domain YP_2686 PF00578 AhpC/TSA family YP_2690 PF01594 AI-2E family transporter YP_2691 PF07720 Tetratricopeptide repeat YP_2691 PF01435 Peptidase family M48 YP_2692 PF03960 ArsC family YP_2693 PF00308 Bacterial dnaA protein YP_2694 PF01797 Transposase IS200 like YP_2696 PF02769 AIR synthase related protein, C-terminal domain YP_2696 PF00586 AIR synthase related protein, N-terminal domain YP_2697 PF00551 Formyl transferase YP_2698 PF13302 Acetyltransferase (GNAT) domain YP_2700 PF00005 ABC transporter YP_2701 PF00528 Binding-protein-dependent transport system inner membrane component YP_2702 PF00528 Binding-protein-dependent transport system inner membrane component YP_2703 PF13090 Polyphosphate kinase C-terminal domain 2 YP_2703 PF02503 Polyphosphate kinase middle domain YP_2703 PF13089 Polyphosphate kinase N-terminal domain YP_2703 PF17941 Polyphosphate kinase C-terminal domain 1 YP_2704 PF02541 Ppx/GppA phosphatase family YP_2706 PF01769 Divalent cation transporter YP_2706 PF00571 CBS domain YP_2706 PF03448 MgtE intracellular N domain YP_2707 PF00012 Hsp70 protein YP_2708 PF00528 Binding-protein-dependent transport system inner membrane component YP_2709 PF00528 Binding-protein-dependent transport system inner membrane component YP_2711 PF00202 Aminotransferase class-III YP_2712 PF00392 Bacterial regulatory proteins, gntR family YP_2712 PF00155 Aminotransferase class I and II YP_2713 PF00005 ABC transporter YP_2713 PF08402 TOBE domain YP_2714 PF13533 Biotin-lipoyl like YP_2715 PF00873 AcrB/AcrD/AcrF family YP_2716 PF00873 AcrB/AcrD/AcrF family YP_2717 PF07690 Major Facilitator Superfamily YP_2718 PF00672 HAMP domain YP_2718 PF00512 His Kinase A (phospho-acceptor) domain YP_2718 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_2719 PF00072 Response regulator receiver domain YP_2719 PF00486 Transcriptional regulatory protein, C terminal YP_2720 PF07411 Domain of unknown function (DUF1508) YP_2722 PF00781 Diacylglycerol kinase catalytic domain YP_2725 PF08543 Phosphomethylpyrimidine kinase YP_2728 PF00872 Transposase, Mutator family YP_2734 PF05638 Type VI secretion system effector, Hcp YP_2735 PF01797 Transposase IS200 like YP_2736 PF00117 Glutamine amidotransferase class-I YP_2736 PF02540 NAD synthase YP_2736 PF00958 GMP synthase C terminal domain YP_2737 PF00478 IMP dehydrogenase / GMP reductase domain YP_2737 PF00571 CBS domain YP_2738 PF13742 OB-fold nucleic acid binding domain YP_2738 PF02601 Exonuclease VII, large subunit YP_2739 PF07191 zinc-ribbons YP_2741 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YP_2741 PF01926 50S ribosome-binding GTPase YP_2742 PF13360 PQQ-like domain YP_2743 PF09976 Tetratricopeptide repeat-like domain YP_2744 PF03129 Anticodon binding domain YP_2744 PF13393 Histidyl-tRNA synthetase YP_2745 PF04551 GcpE protein YP_2746 PF13464 Domain of unknown function (DUF4115) YP_2748 PF04055 Radical SAM superfamily YP_2749 PF00334 Nucleoside diphosphate kinase YP_2752 PF16168 Adhesin of bacterial autotransporter system, probable stalk YP_2752 PF03797 Autotransporter beta-domain YP_2752 PF03212 Pertactin YP_2754 PF00872 Transposase, Mutator family YP_2763 PF00665 Integrase core domain YP_2763 PF02796 Helix-turn-helix domain of resolvase YP_2764 PF01695 IstB-like ATP binding protein YP_2766 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YP_2767 PF00929 Exonuclease YP_2768 PF00075 RNase H YP_2769 PF08241 Methyltransferase domain YP_2770 PF00753 Metallo-beta-lactamase superfamily YP_2770 PF16123 Hydroxyacylglutathione hydrolase C-terminus YP_2771 PF01464 Transglycosylase SLT domain YP_2771 PF01476 LysM domain YP_2772 PF03372 Endonuclease/Exonuclease/phosphatase family YP_2774 PF00248 Aldo/keto reductase family YP_2776 PF00005 ABC transporter YP_2776 PF09383 NIL domain YP_2777 PF00528 Binding-protein-dependent transport system inner membrane component YP_2778 PF03180 NLPA lipoprotein YP_2779 PF16358 RcsF lipoprotein YP_2780 PF18389 TrmO C-terminal domain YP_2780 PF01980 tRNA-methyltransferase O YP_2781 PF03129 Anticodon binding domain YP_2781 PF04073 Aminoacyl-tRNA editing domain YP_2781 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YP_2782 PF17185 NlpE C-terminal OB domain YP_2782 PF04170 NlpE N-terminal domain YP_2783 PF00472 RF-1 domain YP_2784 PF07152 YaeQ protein YP_2785 PF06786 Uncharacterised protein family (UPF0253) YP_2786 PF07073 Modulator of Rho-dependent transcription termination (ROF) YP_2787 PF00034 Cytochrome c YP_2788 PF01171 PP-loop family YP_2788 PF09179 TilS substrate binding domain YP_2788 PF11734 TilS substrate C-terminal domain YP_2789 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_2790 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YP_2791 PF07733 Bacterial DNA polymerase III alpha NTPase domain YP_2791 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YP_2791 PF14579 Helix-hairpin-helix motif YP_2791 PF01336 OB-fold nucleic acid binding domain YP_2791 PF02811 PHP domain YP_2792 PF01351 Ribonuclease HII YP_2793 PF02684 Lipid-A-disaccharide synthetase YP_2794 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YP_2794 PF00132 Bacterial transferase hexapeptide (six repeats) YP_2795 PF07977 FabA-like domain YP_2796 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YP_2796 PF00132 Bacterial transferase hexapeptide (six repeats) YP_2797 PF03938 Outer membrane protein (OmpH-like) YP_2798 PF07244 Surface antigen variable number repeat YP_2798 PF01103 Surface antigen YP_2799 PF17820 PDZ domain YP_2799 PF02163 Peptidase family M50 YP_2801 PF01255 Putative undecaprenyl diphosphate synthase YP_2802 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_2802 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YP_2802 PF13288 DXP reductoisomerase C-terminal domain YP_2804 PF01765 Ribosome recycling factor YP_2805 PF00696 Amino acid kinase family YP_2806 PF00889 Elongation factor TS YP_2807 PF00318 Ribosomal protein S2 YP_2808 PF00557 Metallopeptidase family M24 YP_2809 PF08335 GlnD PII-uridylyltransferase YP_2809 PF01842 ACT domain YP_2809 PF01909 Nucleotidyltransferase domain YP_2809 PF01966 HD domain YP_2810 PF00132 Bacterial transferase hexapeptide (six repeats) YP_2810 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YP_2810 PF14602 Hexapeptide repeat of succinyl-transferase YP_2811 PF11944 Protein of unknown function (DUF3461) YP_2812 PF00258 Flavodoxin YP_2813 PF00849 RNA pseudouridylate synthase YP_2814 PF04287 tRNA pseudouridine synthase C YP_2815 PF01797 Transposase IS200 like YP_2816 PF07348 Syd protein (SUKH-2) YP_2817 PF14489 QueF-like protein YP_2817 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YP_2818 PF03641 Possible lysine decarboxylase YP_2818 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YP_2818 PF11892 Domain of unknown function (DUF3412) YP_2819 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YP_2819 PF01367 5'-3' exonuclease, C-terminal SAM fold YP_2820 PF18125 RlmM ferredoxin-like domain YP_2820 PF01728 FtsJ-like methyltransferase YP_2821 PF04241 Protein of unknown function (DUF423) YP_2822 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_2822 PF03466 LysR substrate binding domain YP_2823 PF00266 Aminotransferase class-V YP_2824 PF02657 Fe-S metabolism associated domain YP_2825 PF00899 ThiF family YP_2826 PF03562 MltA specific insert domain YP_2826 PF06725 3D domain YP_2827 PF01520 N-acetylmuramoyl-L-alanine amidase YP_2827 PF11741 AMIN domain YP_2828 PF00696 Amino acid kinase family YP_2828 PF00583 Acetyltransferase (GNAT) family YP_2829 PF02796 Helix-turn-helix domain of resolvase YP_2829 PF00665 Integrase core domain YP_2830 PF01695 IstB-like ATP binding protein YP_2832 PF02278 Polysaccharide lyase family 8, super-sandwich domain YP_2832 PF09093 Lyase, catalytic YP_2832 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YP_2832 PF09092 Lyase, N terminal YP_2837 PF00484 Carbonic anhydrase YP_2840 PF03958 Bacterial type II/III secretion system short domain YP_2840 PF00263 Bacterial type II and III secretion system protein YP_2842 PF00482 Type II secretion system (T2SS), protein F YP_2843 PF07963 Prokaryotic N-terminal methylation motif YP_2843 PF08334 Type II secretion system (T2SS), protein G YP_2845 PF07963 Prokaryotic N-terminal methylation motif YP_2845 PF02501 Type II secretion system (T2SS), protein I YP_2850 PF06750 Bacterial Peptidase A24 N-terminal domain YP_2850 PF01478 Type IV leader peptidase family YP_2853 PF00872 Transposase, Mutator family YP_2855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YP_2855 PF02203 Tar ligand binding domain homologue YP_2855 PF00672 HAMP domain YP_2858 PF03466 LysR substrate binding domain YP_2858 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_2859 PF07690 Major Facilitator Superfamily YP_2860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_2860 PF03466 LysR substrate binding domain YP_2861 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YP_2861 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YP_2862 PF00356 Bacterial regulatory proteins, lacI family YP_2863 PF01568 Molydopterin dinucleotide binding domain YP_2863 PF00384 Molybdopterin oxidoreductase YP_2864 PF13193 AMP-binding enzyme C-terminal domain YP_2864 PF00501 AMP-binding enzyme YP_2864 PF01553 Acyltransferase YP_2865 PF07690 Major Facilitator Superfamily YP_2868 PF00248 Aldo/keto reductase family YP_2869 PF02976 DNA mismatch repair enzyme MutH YP_2872 PF00293 NUDIX domain YP_2873 PF01590 GAF domain YP_2873 PF05524 PEP-utilising enzyme, N-terminal YP_2873 PF02896 PEP-utilising enzyme, TIM barrel domain YP_2873 PF00391 PEP-utilising enzyme, mobile domain YP_2874 PF01790 Prolipoprotein diacylglyceryl transferase YP_2875 PF00303 Thymidylate synthase YP_2881 PF17946 RecC C-terminal domain YP_2882 PF00675 Insulinase (Peptidase family M16) YP_2882 PF05193 Peptidase M16 inactive domain YP_2882 PF16187 Middle or third domain of peptidase_M16 YP_2883 PF12705 PD-(D/E)XK nuclease superfamily YP_2883 PF00580 UvrD/REP helicase N-terminal domain YP_2883 PF13361 UvrD-like helicase C-terminal domain YP_2884 PF13538 UvrD-like helicase C-terminal domain YP_2885 PF01695 IstB-like ATP binding protein YP_2886 PF02796 Helix-turn-helix domain of resolvase YP_2886 PF00665 Integrase core domain YP_2887 PF07681 DoxX YP_2889 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YP_2890 PF05957 Bacterial protein of unknown function (DUF883) YP_2893 PF13721 SecD export protein N-terminal TM region YP_2894 PF09335 SNARE associated Golgi protein YP_2896 PF07729 FCD domain YP_2896 PF00392 Bacterial regulatory proteins, gntR family YP_2897 PF07690 Major Facilitator Superfamily YP_2899 PF02614 Glucuronate isomerase YP_2900 PF01232 Mannitol dehydrogenase Rossmann domain YP_2900 PF08125 Mannitol dehydrogenase C-terminal domain YP_2901 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YP_2901 PF08666 SAF domain YP_2902 PF10688 Bacterial inner membrane protein YP_2903 PF01797 Transposase IS200 like YP_2904 PF00375 Sodium:dicarboxylate symporter family YP_2905 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YP_2906 PF01863 Protein of unknown function DUF45 YP_2907 PF03797 Autotransporter beta-domain YP_2908 PF05175 Methyltransferase small domain YP_2909 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YP_2909 PF07992 Pyridine nucleotide-disulphide oxidoreductase YP_2910 PF03729 Short repeat of unknown function (DUF308) YP_2916 PF02342 TerD domain YP_2917 PF00092 von Willebrand factor type A domain YP_2918 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YP_2918 PF17287 POTRA domain YP_2918 PF08479 POTRA domain, ShlB-type YP_2919 PF13018 Extended Signal Peptide of Type V secretion system YP_2919 PF13332 Hemagglutinin repeat YP_2919 PF04829 Pre-toxin domain with VENN motif YP_2919 PF05860 haemagglutination activity domain YP_2921 PF13332 Hemagglutinin repeat YP_2921 PF13018 Extended Signal Peptide of Type V secretion system YP_2921 PF04829 Pre-toxin domain with VENN motif YP_2921 PF05860 haemagglutination activity domain YP_2923 PF13018 Extended Signal Peptide of Type V secretion system YP_2923 PF04829 Pre-toxin domain with VENN motif YP_2923 PF05860 haemagglutination activity domain YP_2923 PF13332 Hemagglutinin repeat YP_2927 PF03459 TOBE domain YP_2927 PF00005 ABC transporter YP_2927 PF17912 MalK OB fold domain YP_2928 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YP_2929 PF00356 Bacterial regulatory proteins, lacI family YP_2930 PF13416 Bacterial extracellular solute-binding protein YP_2931 PF00528 Binding-protein-dependent transport system inner membrane component YP_2932 PF00528 Binding-protein-dependent transport system inner membrane component YP_2934 PF01915 Glycosyl hydrolase family 3 C-terminal domain YP_2934 PF00933 Glycosyl hydrolase family 3 N terminal domain YP_2934 PF14310 Fibronectin type III-like domain YP_2936 PF04632 Fusaric acid resistance protein family YP_2937 PF00529 HlyD membrane-fusion protein of T1SS YP_2937 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YP_2944 PF01042 Endoribonuclease L-PSP YP_2948 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_2948 PF03466 LysR substrate binding domain YP_2956 PF00872 Transposase, Mutator family YP_2958 PF00140 Sigma-70 factor, region 1.2 YP_2958 PF04545 Sigma-70, region 4 YP_2958 PF04542 Sigma-70 region 2 YP_2958 PF04539 Sigma-70 region 3 YP_2958 PF04546 Sigma-70, non-essential region YP_2958 PF03979 Sigma-70 factor, region 1.1 YP_2959 PF08275 DNA primase catalytic core, N-terminal domain YP_2959 PF08278 DNA primase DnaG DnaB-binding YP_2959 PF01807 CHC2 zinc finger YP_2959 PF10410 DnaB-helicase binding domain of primase YP_2960 PF01165 Ribosomal protein S21 YP_2961 PF00814 Glycoprotease family YP_2962 PF02660 Glycerol-3-phosphate acyltransferase YP_2963 PF02152 Dihydroneopterin aldolase YP_2964 PF02673 Bacitracin resistance protein BacA YP_2965 PF01966 HD domain YP_2965 PF12627 Probable RNA and SrmB- binding site of polymerase A YP_2965 PF01743 Poly A polymerase head domain YP_2966 PF08239 Bacterial SH3 domain YP_2967 PF01928 CYTH domain YP_2968 PF08335 GlnD PII-uridylyltransferase YP_2968 PF03710 Glutamate-ammonia ligase adenylyltransferase YP_2969 PF00294 pfkB family carbohydrate kinase YP_2969 PF01467 Cytidylyltransferase-like YP_2970 PF13520 Amino acid permease YP_2971 PF04380 Membrane fusogenic activity YP_2973 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_2974 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YP_2975 PF03738 Glutathionylspermidine synthase preATP-grasp YP_2976 PF06693 Protein of unknown function (DUF1190) YP_2978 PF02321 Outer membrane efflux protein YP_2979 PF00293 NUDIX domain YP_2980 PF06853 Protein of unknown function (DUF1249) YP_2981 PF00149 Calcineurin-like phosphoesterase YP_2982 PF05728 Uncharacterised protein family (UPF0227) YP_2983 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_2983 PF01751 Toprim domain YP_2983 PF00986 DNA gyrase B subunit, carboxyl terminus YP_2983 PF00204 DNA gyrase B YP_2984 PF03466 LysR substrate binding domain YP_2984 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_2985 PF02525 Flavodoxin-like fold YP_2987 PF03989 DNA gyrase C-terminal domain, beta-propeller YP_2987 PF00521 DNA gyrase/topoisomerase IV, subunit A YP_2988 PF01553 Acyltransferase YP_2989 PF07731 Multicopper oxidase YP_2989 PF07732 Multicopper oxidase YP_2991 PF00248 Aldo/keto reductase family YP_2993 PF00465 Iron-containing alcohol dehydrogenase YP_2994 PF06719 AraC-type transcriptional regulator N-terminus YP_2994 PF12833 Helix-turn-helix domain YP_2995 PF09335 SNARE associated Golgi protein YP_2996 PF01053 Cys/Met metabolism PLP-dependent enzyme YP_2997 PF01618 MotA/TolQ/ExbB proton channel family YP_2998 PF02472 Biopolymer transport protein ExbD/TolR YP_3005 PF00437 Type II/IV secretion system protein YP_3010 PF01797 Transposase IS200 like YP_3012 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YP_3012 PF02753 Pili assembly chaperone PapD, C-terminal domain YP_3013 PF00419 Fimbrial protein YP_3013 PF09222 Fimbrial adhesin F17-AG, lectin domain YP_3014 PF01497 Periplasmic binding protein YP_3018 PF01312 FlhB HrpN YscU SpaS Family YP_3019 PF01311 Bacterial export proteins, family 1 YP_3020 PF01313 Bacterial export proteins, family 3 YP_3021 PF00813 FliP family YP_3022 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YP_3024 PF00158 Sigma-54 interaction domain YP_3024 PF00072 Response regulator receiver domain YP_3024 PF02954 Bacterial regulatory protein, Fis family YP_3025 PF02049 Flagellar hook-basal body complex protein FliE YP_3026 PF01514 Secretory protein of YscJ/FliF family YP_3026 PF08345 Flagellar M-ring protein C-terminal YP_3029 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YP_3029 PF18269 T3SS EscN ATPase C-terminal domain YP_3033 PF13144 Chaperone for flagella basal body P-ring formation YP_3034 PF00460 Flagella basal body rod protein YP_3035 PF00460 Flagella basal body rod protein YP_3035 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YP_3036 PF13860 FlgD Ig-like domain YP_3036 PF13861 FlgD Tudor-like domain YP_3036 PF03963 Flagellar hook capping protein - N-terminal region YP_3037 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YP_3037 PF07559 Flagellar basal body protein FlaE YP_3037 PF00460 Flagella basal body rod protein YP_3038 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YP_3038 PF00460 Flagella basal body rod protein YP_3039 PF00460 Flagella basal body rod protein YP_3039 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YP_3040 PF02107 Flagellar L-ring protein YP_3041 PF02119 Flagellar P-ring protein YP_3043 PF00460 Flagella basal body rod protein YP_3043 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YP_3047 PF00486 Transcriptional regulatory protein, C terminal YP_3047 PF18500 CadC C-terminal domain 1 YP_3049 PF07196 Flagellin hook IN motif YP_3049 PF07195 Flagellar hook-associated protein 2 C-terminus YP_3049 PF02465 Flagellar hook-associated protein 2 N-terminus YP_3054 PF04542 Sigma-70 region 2 YP_3054 PF04545 Sigma-70, region 4 YP_3055 PF01618 MotA/TolQ/ExbB proton channel family YP_3056 PF00691 OmpA family YP_3056 PF13677 Membrane MotB of proton-channel complex MotA/MotB YP_3064 PF13276 HTH-like domain YP_3064 PF13333 Integrase core domain YP_3064 PF00665 Integrase core domain YP_3069 PF05638 Type VI secretion system effector, Hcp YP_3072 PF07148 Maltose operon periplasmic protein precursor (MalM) YP_3073 PF02264 LamB porin YP_3074 PF00005 ABC transporter YP_3074 PF17912 MalK OB fold domain YP_3076 PF01547 Bacterial extracellular solute-binding protein YP_3077 PF14785 Maltose transport system permease protein MalF P2 domain YP_3077 PF00528 Binding-protein-dependent transport system inner membrane component YP_3078 PF00528 Binding-protein-dependent transport system inner membrane component YP_3079 PF06146 Phosphate-starvation-inducible E YP_3080 PF00342 Phosphoglucose isomerase YP_3081 PF01842 ACT domain YP_3081 PF00696 Amino acid kinase family YP_3083 PF05860 haemagglutination activity domain YP_3083 PF13332 Hemagglutinin repeat YP_3084 PF02574 Homocysteine S-methyltransferase YP_3084 PF00809 Pterin binding enzyme YP_3084 PF02310 B12 binding domain YP_3084 PF02965 Vitamin B12 dependent methionine synthase, activation domain YP_3084 PF02607 B12 binding domain YP_3085 PF01614 Bacterial transcriptional regulator YP_3085 PF09339 IclR helix-turn-helix domain YP_3086 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YP_3087 PF00463 Isocitrate lyase family YP_3088 PF01274 Malate synthase YP_3089 PF04204 Homoserine O-succinyltransferase YP_3091 PF02142 MGS-like domain YP_3091 PF01808 AICARFT/IMPCHase bienzyme YP_3092 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YP_3092 PF02844 Phosphoribosylglycinamide synthetase, N domain YP_3092 PF02843 Phosphoribosylglycinamide synthetase, C domain YP_3093 PF07356 Protein of unknown function (DUF1481) YP_3094 PF00216 Bacterial DNA-binding protein YP_3095 PF04222 Protein of unknown function (DUF416) YP_3096 PF04493 Endonuclease V YP_3097 PF01208 Uroporphyrinogen decarboxylase (URO-D) YP_3099 PF09297 NADH pyrophosphatase zinc ribbon domain YP_3099 PF00293 NUDIX domain YP_3100 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YP_3102 PF13667 ThiC-associated domain YP_3102 PF01964 Radical SAM ThiC family YP_3103 PF02581 Thiamine monophosphate synthase YP_3104 PF00899 ThiF family YP_3106 PF05690 Thiazole biosynthesis protein ThiG YP_3107 PF06968 Biotin and Thiamin Synthesis associated domain YP_3107 PF04055 Radical SAM superfamily YP_3109 PF05000 RNA polymerase Rpb1, domain 4 YP_3109 PF04997 RNA polymerase Rpb1, domain 1 YP_3109 PF04998 RNA polymerase Rpb1, domain 5 YP_3109 PF04983 RNA polymerase Rpb1, domain 3 YP_3109 PF00623 RNA polymerase Rpb1, domain 2 YP_3110 PF00562 RNA polymerase Rpb2, domain 6 YP_3110 PF04563 RNA polymerase beta subunit YP_3110 PF04560 RNA polymerase Rpb2, domain 7 YP_3110 PF04561 RNA polymerase Rpb2, domain 2 YP_3110 PF04565 RNA polymerase Rpb2, domain 3 YP_3110 PF10385 RNA polymerase beta subunit external 1 domain YP_3111 PF16320 Ribosomal protein L7/L12 dimerisation domain YP_3111 PF00542 Ribosomal protein L7/L12 C-terminal domain YP_3112 PF00466 Ribosomal protein L10 YP_3113 PF00687 Ribosomal protein L1p/L10e family YP_3114 PF00298 Ribosomal protein L11, RNA binding domain YP_3114 PF03946 Ribosomal protein L11, N-terminal domain YP_3115 PF00467 KOW motif YP_3115 PF02357 Transcription termination factor nusG YP_3116 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YP_3117 PF03143 Elongation factor Tu C-terminal domain YP_3117 PF03144 Elongation factor Tu domain 2 YP_3117 PF00009 Elongation factor Tu GTP binding domain YP_3119 PF13276 HTH-like domain YP_3119 PF13333 Integrase core domain YP_3119 PF00665 Integrase core domain YP_3121 PF00311 Phosphoenolpyruvate carboxylase YP_3122 PF01546 Peptidase family M20/M25/M40 YP_3122 PF07687 Peptidase dimerisation domain YP_3123 PF02774 Semialdehyde dehydrogenase, dimerisation domain YP_3123 PF01118 Semialdehyde dehydrogenase, NAD binding domain YP_3124 PF00696 Amino acid kinase family YP_3125 PF00206 Lyase YP_3125 PF14698 Argininosuccinate lyase C-terminal YP_3126 PF00593 TonB dependent receptor YP_3126 PF07715 TonB-dependent Receptor Plug Domain YP_3128 PF00005 ABC transporter YP_3128 PF00664 ABC transporter transmembrane region YP_3129 PF00529 HlyD membrane-fusion protein of T1SS YP_3130 PF03544 Gram-negative bacterial TonB protein C-terminal YP_3131 PF07992 Pyridine nucleotide-disulphide oxidoreductase YP_3131 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_3132 PF00462 Glutaredoxin YP_3132 PF08534 Redoxin YP_3133 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_3133 PF03466 LysR substrate binding domain YP_3134 PF07992 Pyridine nucleotide-disulphide oxidoreductase YP_3134 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_3135 PF00440 Bacterial regulatory proteins, tetR family YP_3136 PF07226 Protein of unknown function (DUF1422) YP_3137 PF05958 tRNA (Uracil-5-)-methyltransferase YP_3138 PF07715 TonB-dependent Receptor Plug Domain YP_3138 PF00593 TonB dependent receptor YP_3139 PF01177 Asp/Glu/Hydantoin racemase YP_3140 PF13407 Periplasmic binding protein domain YP_3141 PF00005 ABC transporter YP_3142 PF02653 Branched-chain amino acid transport system / permease component YP_3143 PF02653 Branched-chain amino acid transport system / permease component YP_3144 PF03466 LysR substrate binding domain YP_3144 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_3145 PF04219 Protein of unknown function, DUF YP_3146 PF13335 Magnesium chelatase, subunit ChlI C-terminal YP_3146 PF01078 Magnesium chelatase, subunit ChlI YP_3147 PF00205 Thiamine pyrophosphate enzyme, central domain YP_3147 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YP_3147 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_3149 PF01063 Amino-transferase class IV YP_3150 PF00920 Dehydratase family YP_3151 PF00291 Pyridoxal-phosphate dependent enzyme YP_3151 PF00585 C-terminal regulatory domain of Threonine dehydratase YP_3157 PF03466 LysR substrate binding domain YP_3157 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_3158 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YP_3158 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YP_3163 PF01320 Colicin immunity protein / pyocin immunity protein YP_3165 PF02753 Pili assembly chaperone PapD, C-terminal domain YP_3165 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YP_3167 PF13953 PapC C-terminal domain YP_3167 PF13954 PapC N-terminal domain YP_3167 PF00577 Outer membrane usher protein YP_3168 PF02753 Pili assembly chaperone PapD, C-terminal domain YP_3168 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YP_3173 PF13361 UvrD-like helicase C-terminal domain YP_3173 PF00580 UvrD/REP helicase N-terminal domain YP_3175 PF02541 Ppx/GppA phosphatase family YP_3176 PF00270 DEAD/DEAH box helicase YP_3176 PF00271 Helicase conserved C-terminal domain YP_3177 PF00085 Thioredoxin YP_3178 PF07497 Rho termination factor, RNA-binding domain YP_3178 PF07498 Rho termination factor, N-terminal domain YP_3178 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YP_3179 PF00953 Glycosyl transferase family 4 YP_3180 PF02706 Chain length determinant protein YP_3181 PF02350 UDP-N-acetylglucosamine 2-epimerase YP_3182 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YP_3182 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YP_3182 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YP_3183 PF16363 GDP-mannose 4,6 dehydratase YP_3184 PF00483 Nucleotidyl transferase YP_3186 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YP_3187 PF01943 Polysaccharide biosynthesis protein YP_3188 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YP_3189 PF06899 WzyE protein, O-antigen assembly polymerase YP_3190 PF03808 Glycosyl transferase WecB/TagA/CpsF family YP_3191 PF00324 Amino acid permease YP_3193 PF01797 Transposase IS200 like YP_3194 PF07719 Tetratricopeptide repeat YP_3194 PF07219 HemY protein N-terminus YP_3195 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YP_3196 PF02602 Uroporphyrinogen-III synthase HemD YP_3197 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YP_3197 PF03900 Porphobilinogen deaminase, C-terminal domain YP_3199 PF01295 Adenylate cyclase, class-I YP_3199 PF12633 Adenylate cyclase NT domain YP_3200 PF01491 Frataxin-like domain YP_3201 PF13627 Prokaryotic lipoprotein-attachment site YP_3202 PF01678 Diaminopimelate epimerase YP_3203 PF04340 Protein of unknown function, DUF484 YP_3204 PF02899 Phage integrase, N-terminal SAM-like domain YP_3204 PF00589 Phage integrase family YP_3205 PF13419 Haloacid dehalogenase-like hydrolase YP_3206 PF13361 UvrD-like helicase C-terminal domain YP_3206 PF00580 UvrD/REP helicase N-terminal domain YP_3210 PF09370 Phosphoenolpyruvate hydrolase-like YP_3211 PF01544 CorA-like Mg2+ transporter protein YP_3212 PF00892 EamA-like transporter family YP_3213 PF03061 Thioesterase superfamily YP_3214 PF02253 Phospholipase A1 YP_3215 PF09382 RQC domain YP_3215 PF16124 RecQ zinc-binding YP_3215 PF00271 Helicase conserved C-terminal domain YP_3215 PF00570 HRDC domain YP_3215 PF00270 DEAD/DEAH box helicase YP_3216 PF01810 LysE type translocator YP_3217 PF01810 LysE type translocator YP_3218 PF12146 Serine aminopeptidase, S33 YP_3221 PF03009 Glycerophosphoryl diester phosphodiesterase family YP_3222 PF04324 BFD-like [2Fe-2S] binding domain YP_3222 PF01266 FAD dependent oxidoreductase YP_3223 PF00890 FAD binding domain YP_3224 PF13183 4Fe-4S dicluster domain YP_3224 PF02754 Cysteine-rich domain YP_3225 PF08786 DcrB YP_3226 PF02592 Putative vitamin uptake transporter YP_3227 PF01206 Sulfurtransferase TusA YP_3228 PF00403 Heavy-metal-associated domain YP_3229 PF07947 YhhN family YP_3232 PF06611 Protein of unknown function (DUF1145) YP_3235 PF00448 SRP54-type protein, GTPase domain YP_3235 PF02881 SRP54-type protein, helical bundle domain YP_3235 PF00448 SRP54-type protein, GTPase domain YP_3235 PF02881 SRP54-type protein, helical bundle domain YP_3236 PF00005 ABC transporter YP_3237 PF02687 FtsX-like permease family YP_3237 PF18075 FtsX extracellular domain YP_3238 PF04545 Sigma-70, region 4 YP_3238 PF00140 Sigma-70 factor, region 1.2 YP_3238 PF04542 Sigma-70 region 2 YP_3239 PF01797 Transposase IS200 like YP_3240 PF12568 Acetyltransferase (GNAT) domain, PanZ YP_3241 PF13458 Periplasmic binding protein YP_3242 PF02653 Branched-chain amino acid transport system / permease component YP_3243 PF11862 Domain of unknown function (DUF3382) YP_3243 PF02653 Branched-chain amino acid transport system / permease component YP_3244 PF00005 ABC transporter YP_3244 PF12399 Branched-chain amino acid ATP-binding cassette transporter YP_3245 PF00005 ABC transporter YP_3253 PF13416 Bacterial extracellular solute-binding protein YP_3254 PF00528 Binding-protein-dependent transport system inner membrane component YP_3255 PF00528 Binding-protein-dependent transport system inner membrane component YP_3256 PF17912 MalK OB fold domain YP_3256 PF00005 ABC transporter YP_3257 PF03009 Glycerophosphoryl diester phosphodiesterase family YP_3258 PF03547 Membrane transport protein YP_3259 PF00892 EamA-like transporter family YP_3260 PF03466 LysR substrate binding domain YP_3260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_3261 PF08267 Cobalamin-independent synthase, N-terminal domain YP_3261 PF01717 Cobalamin-independent synthase, Catalytic domain YP_3262 PF01738 Dienelactone hydrolase family YP_3263 PF01048 Phosphorylase superfamily YP_3265 PF02554 Carbon starvation protein CstA YP_3265 PF13722 5TM C-terminal transporter carbon starvation CstA YP_3266 PF09335 SNARE associated Golgi protein YP_3267 PF02646 RmuC family YP_3268 PF01209 ubiE/COQ5 methyltransferase family YP_3269 PF02036 SCP-2 sterol transfer family YP_3270 PF03109 ABC1 family YP_3271 PF02416 mttA/Hcf106 family YP_3273 PF00902 Sec-independent protein translocase protein (TatC) YP_3275 PF02796 Helix-turn-helix domain of resolvase YP_3275 PF00665 Integrase core domain YP_3276 PF01695 IstB-like ATP binding protein YP_3277 PF00490 Delta-aminolevulinic acid dehydratase YP_3278 PF02357 Transcription termination factor nusG YP_3279 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_3280 PF00175 Oxidoreductase NAD-binding domain YP_3280 PF00970 Oxidoreductase FAD-binding domain YP_3281 PF02803 Thiolase, C-terminal domain YP_3281 PF00108 Thiolase, N-terminal domain YP_3282 PF00378 Enoyl-CoA hydratase/isomerase YP_3282 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_3282 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YP_3283 PF00557 Metallopeptidase family M24 YP_3284 PF09186 Domain of unknown function (DUF1949) YP_3284 PF01205 Uncharacterized protein family UPF0029 YP_3285 PF02386 Cation transport protein YP_3286 PF12724 Flavodoxin domain YP_3288 PF01565 FAD binding domain YP_3288 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YP_3289 PF03099 Biotin/lipoate A/B protein ligase family YP_3289 PF02237 Biotin protein ligase C terminal domain YP_3289 PF08279 HTH domain YP_3290 PF00485 Phosphoribulokinase / Uridine kinase family YP_3291 PF13673 Acetyltransferase (GNAT) domain YP_3293 PF00665 Integrase core domain YP_3293 PF02796 Helix-turn-helix domain of resolvase YP_3294 PF01695 IstB-like ATP binding protein YP_3299 PF01266 FAD dependent oxidoreductase YP_3299 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YP_3300 PF00343 Carbohydrate phosphorylase YP_3301 PF08323 Starch synthase catalytic domain YP_3301 PF00534 Glycosyl transferases group 1 YP_3302 PF00483 Nucleotidyl transferase YP_3303 PF00128 Alpha amylase, catalytic domain YP_3303 PF18390 Glycogen debranching enzyme C-terminal domain YP_3303 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YP_3304 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YP_3304 PF00128 Alpha amylase, catalytic domain YP_3304 PF02806 Alpha amylase, C-terminal all-beta domain YP_3305 PF06580 Histidine kinase YP_3305 PF07694 5TMR of 5TMR-LYT YP_3306 PF11924 Inverse autotransporter, beta-domain YP_3306 PF07979 Intimin C-type lectin domain YP_3306 PF09134 Invasin, domain 3 YP_3306 PF02369 Bacterial Ig-like domain (group 1) YP_3311 PF01118 Semialdehyde dehydrogenase, NAD binding domain YP_3311 PF02774 Semialdehyde dehydrogenase, dimerisation domain YP_3312 PF01914 MarC family integral membrane protein YP_3315 PF01202 Shikimate kinase YP_3316 PF02447 GntP family permease YP_3317 PF00356 Bacterial regulatory proteins, lacI family YP_3317 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YP_3318 PF02678 Pirin YP_3318 PF17954 Quercetinase C-terminal cupin domain YP_3321 PF00486 Transcriptional regulatory protein, C terminal YP_3321 PF00072 Response regulator receiver domain YP_3323 PF01116 Fructose-bisphosphate aldolase class-II YP_3325 PF13407 Periplasmic binding protein domain YP_3326 PF02653 Branched-chain amino acid transport system / permease component YP_3327 PF00005 ABC transporter YP_3328 PF00512 His Kinase A (phospho-acceptor) domain YP_3328 PF08448 PAS fold YP_3328 PF00072 Response regulator receiver domain YP_3328 PF13188 PAS domain YP_3328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_3330 PF01384 Phosphate transporter family YP_3331 PF01797 Transposase IS200 like YP_3332 PF10625 Universal stress protein B (UspB) YP_3333 PF00582 Universal stress protein family YP_3334 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YP_3334 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YP_3335 PF08548 Peptidase M10 serralysin C terminal YP_3335 PF00413 Matrixin YP_3335 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YP_3336 PF04445 Putative SAM-dependent methyltransferase YP_3337 PF01432 Peptidase family M3 YP_3339 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YP_3340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_3340 PF07992 Pyridine nucleotide-disulphide oxidoreductase YP_3341 PF05651 Putative sugar diacid recognition YP_3341 PF17853 GGDEF-like domain YP_3341 PF13556 PucR C-terminal helix-turn-helix domain YP_3342 PF02447 GntP family permease YP_3343 PF02595 Glycerate kinase family YP_3348 PF03631 Virulence factor BrkB YP_3349 PF02611 CDP-diacylglycerol pyrophosphatase YP_3350 PF05170 AsmA family YP_3351 PF00563 EAL domain YP_3352 PF01361 Tautomerase enzyme YP_3353 PF00294 pfkB family carbohydrate kinase YP_3354 PF00675 Insulinase (Peptidase family M16) YP_3354 PF05193 Peptidase M16 inactive domain YP_3355 PF00375 Sodium:dicarboxylate symporter family YP_3357 PF06917 Periplasmic pectate lyase YP_3358 PF06178 Oligogalacturonate-specific porin protein (KdgM) YP_3359 PF00672 HAMP domain YP_3359 PF00563 EAL domain YP_3359 PF00990 Diguanylate cyclase, GGDEF domain YP_3359 PF17154 Gammaproteobacterial periplasmic sensor domain YP_3361 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YP_3361 PF00005 ABC transporter YP_3362 PF00005 ABC transporter YP_3362 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YP_3363 PF12911 N-terminal TM domain of oligopeptide transport permease C YP_3363 PF00528 Binding-protein-dependent transport system inner membrane component YP_3364 PF00528 Binding-protein-dependent transport system inner membrane component YP_3365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YP_3367 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YP_3367 PF08479 POTRA domain, ShlB-type YP_3367 PF17287 POTRA domain YP_3368 PF05860 haemagglutination activity domain YP_3368 PF04829 Pre-toxin domain with VENN motif YP_3368 PF13332 Hemagglutinin repeat YP_3368 PF05594 Haemagluttinin repeat YP_3369 PF07690 Major Facilitator Superfamily YP_3370 PF07730 Histidine kinase YP_3370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_3370 PF05231 MASE1 YP_3371 PF00196 Bacterial regulatory proteins, luxR family YP_3371 PF00072 Response regulator receiver domain YP_3372 PF08019 Phosphoethanolamine transferase EptA/EptB YP_3372 PF00884 Sulfatase YP_3374 PF12146 Serine aminopeptidase, S33 YP_3377 PF01695 IstB-like ATP binding protein YP_3378 PF02796 Helix-turn-helix domain of resolvase YP_3378 PF00665 Integrase core domain YP_3379 PF00221 Aromatic amino acid lyase YP_3380 PF01175 Urocanase Rossmann-like domain YP_3380 PF17392 Urocanase C-terminal domain YP_3380 PF17391 Urocanase N-terminal domain YP_3381 PF00291 Pyridoxal-phosphate dependent enzyme YP_3382 PF00156 Phosphoribosyl transferase domain YP_3385 PF01497 Periplasmic binding protein YP_3386 PF01032 FecCD transport family YP_3387 PF01032 FecCD transport family YP_3388 PF00005 ABC transporter YP_3393 PF04606 Ogr/Delta-like zinc finger YP_3395 PF13356 Arm DNA-binding domain YP_3395 PF00589 Phage integrase family YP_3395 PF14659 Phage integrase, N-terminal SAM-like domain YP_3396 PF12833 Helix-turn-helix domain YP_3397 PF02653 Branched-chain amino acid transport system / permease component YP_3398 PF00005 ABC transporter YP_3399 PF13407 Periplasmic binding protein domain YP_3401 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YP_3401 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YP_3403 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YP_3403 PF02753 Pili assembly chaperone PapD, C-terminal domain YP_3404 PF13953 PapC C-terminal domain YP_3404 PF13954 PapC N-terminal domain YP_3404 PF00577 Outer membrane usher protein YP_3405 PF13954 PapC N-terminal domain YP_3405 PF13953 PapC C-terminal domain YP_3405 PF00577 Outer membrane usher protein YP_3406 PF00419 Fimbrial protein YP_3407 PF01757 Acyltransferase family YP_3409 PF00665 Integrase core domain YP_3409 PF13276 HTH-like domain YP_3409 PF13333 Integrase core domain YP_3410 PF13188 PAS domain YP_3410 PF03707 Bacterial signalling protein N terminal repeat YP_3410 PF00990 Diguanylate cyclase, GGDEF domain YP_3410 PF00563 EAL domain YP_3411 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YP_3411 PF00529 HlyD membrane-fusion protein of T1SS YP_3412 PF00873 AcrB/AcrD/AcrF family YP_3413 PF07906 ShET2 enterotoxin, N-terminal region YP_3415 PF03797 Autotransporter beta-domain YP_3416 PF12468 Type III secretion system leucine rich repeat protein YP_3416 PF14496 C-terminal novel E3 ligase, LRR-interacting YP_3417 PF14496 C-terminal novel E3 ligase, LRR-interacting YP_3417 PF12468 Type III secretion system leucine rich repeat protein YP_3417 PF12468 Type III secretion system leucine rich repeat protein YP_3417 PF14496 C-terminal novel E3 ligase, LRR-interacting YP_3418 PF12468 Type III secretion system leucine rich repeat protein YP_3418 PF14496 C-terminal novel E3 ligase, LRR-interacting YP_3420 PF03806 AbgT putative transporter family YP_3421 PF01546 Peptidase family M20/M25/M40 YP_3421 PF07687 Peptidase dimerisation domain YP_3422 PF07715 TonB-dependent Receptor Plug Domain YP_3422 PF00593 TonB dependent receptor YP_3423 PF00668 Condensation domain YP_3423 PF00550 Phosphopantetheine attachment site YP_3423 PF00501 AMP-binding enzyme YP_3423 PF08242 Methyltransferase domain YP_3424 PF00668 Condensation domain YP_3424 PF00501 AMP-binding enzyme YP_3424 PF13193 AMP-binding enzyme C-terminal domain YP_3425 PF08242 Methyltransferase domain YP_3425 PF00501 AMP-binding enzyme YP_3425 PF00668 Condensation domain YP_3425 PF00550 Phosphopantetheine attachment site YP_3428 PF00975 Thioesterase domain YP_3430 PF08021 Siderophore-interacting FAD-binding domain YP_3430 PF04954 Siderophore-interacting protein YP_3430 PF00664 ABC transporter transmembrane region YP_3430 PF00005 ABC transporter YP_3431 PF00005 ABC transporter YP_3431 PF00664 ABC transporter transmembrane region YP_3434 PF02447 GntP family permease YP_3436 PF12951 Passenger-associated-transport-repeat YP_3437 PF04717 Type VI secretion system, phage-baseplate injector YP_3439 PF05593 RHS Repeat YP_3439 PF03527 RHS protein YP_3442 PF00939 Sodium:sulfate symporter transmembrane region YP_3443 PF00356 Bacterial regulatory proteins, lacI family YP_3446 PF07715 TonB-dependent Receptor Plug Domain YP_3446 PF00593 TonB dependent receptor YP_3447 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YP_3448 PF06276 Ferric iron reductase FhuF-like transporter YP_3448 PF04183 IucA / IucC family YP_3454 PF00196 Bacterial regulatory proteins, luxR family YP_3454 PF03472 Autoinducer binding domain YP_3455 PF00765 Autoinducer synthase YP_3456 PF02517 CPBP intramembrane metalloprotease YP_3458 PF12759 InsA C-terminal domain YP_3458 PF03811 InsA N-terminal domain YP_3465 PF00691 OmpA family YP_3465 PF05736 OprF membrane domain YP_3467 PF10431 C-terminal, D2-small domain, of ClpB protein YP_3467 PF00004 ATPase family associated with various cellular activities (AAA) YP_3467 PF07724 AAA domain (Cdc48 subfamily) YP_3467 PF17871 AAA lid domain YP_3472 PF12759 InsA C-terminal domain YP_3472 PF03811 InsA N-terminal domain YP_3477 PF03811 InsA N-terminal domain YP_3477 PF12759 InsA C-terminal domain YP_3478 PF03400 IS1 transposase YP_3481 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YP_3481 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YP_3481 PF01276 Orn/Lys/Arg decarboxylase, major domain YP_3482 PF13407 Periplasmic binding protein domain YP_3483 PF00005 ABC transporter YP_3484 PF02653 Branched-chain amino acid transport system / permease component YP_3485 PF07715 TonB-dependent Receptor Plug Domain YP_3487 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YP_3487 PF01464 Transglycosylase SLT domain YP_3488 PF04362 Bacterial Fe(2+) trafficking YP_3489 PF00633 Helix-hairpin-helix motif YP_3489 PF00730 HhH-GPD superfamily base excision DNA repair protein YP_3489 PF14815 NUDIX domain YP_3489 PF10576 Iron-sulfur binding domain of endonuclease III YP_3490 PF02390 Putative methyltransferase YP_3491 PF04320 Protein with unknown function (DUF469) YP_3492 PF04960 Glutaminase YP_3494 PF07634 RtxA repeat YP_3494 PF11647 Membrane Localization Domain YP_3494 PF12146 Serine aminopeptidase, S33 YP_3494 PF11713 Peptidase C80 family YP_3494 PF16671 Actin cross-linking domain YP_3495 PF00872 Transposase, Mutator family YP_3496 PF06969 HemN C-terminal domain YP_3496 PF04055 Radical SAM superfamily YP_3497 PF01725 Ham1 family YP_3498 PF02594 Uncharacterised ACR, YggU family COG1872 YP_3499 PF02325 YGGT family YP_3500 PF03807 NADP oxidoreductase coenzyme F420-dependent YP_3500 PF14748 Pyrroline-5-carboxylate reductase dimerisation YP_3501 PF01168 Alanine racemase, N-terminal domain YP_3502 PF00437 Type II/IV secretion system protein YP_3503 PF04371 Porphyromonas-type peptidyl-arginine deiminase YP_3504 PF00795 Carbon-nitrogen hydrolase YP_3505 PF03652 Holliday junction resolvase YP_3506 PF02622 Uncharacterized ACR, COG1678 YP_3507 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YP_3507 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YP_3508 PF04452 RNA methyltransferase YP_3510 PF04231 Endonuclease I YP_3511 PF10263 SprT-like family YP_3511 PF17283 SprT-like zinc ribbon domain YP_3512 PF00438 S-adenosylmethionine synthetase, N-terminal domain YP_3512 PF02773 S-adenosylmethionine synthetase, C-terminal domain YP_3512 PF02772 S-adenosylmethionine synthetase, central domain YP_3513 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YP_3513 PF17944 Arginine decarboxylase C-terminal helical extension YP_3513 PF17810 Arginine decarboxylase helical bundle domain YP_3514 PF00355 Rieske [2Fe-2S] domain YP_3515 PF01435 Peptidase family M48 YP_3516 PF02779 Transketolase, pyrimidine binding domain YP_3516 PF02780 Transketolase, C-terminal domain YP_3516 PF00456 Transketolase, thiamine diphosphate binding domain YP_3517 PF01797 Transposase IS200 like YP_3518 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YP_3518 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YP_3519 PF00162 Phosphoglycerate kinase YP_3520 PF01116 Fructose-bisphosphate aldolase class-II YP_3521 PF05552 Conserved TM helix YP_3521 PF00924 Mechanosensitive ion channel YP_3523 PF01695 IstB-like ATP binding protein YP_3524 PF02796 Helix-turn-helix domain of resolvase YP_3524 PF00665 Integrase core domain YP_3525 PF01797 Transposase IS200 like YP_3526 PF00884 Sulfatase YP_3527 PF08220 DeoR-like helix-turn-helix domain YP_3527 PF00455 DeoR C terminal sensor domain YP_3528 PF08013 Tagatose 6 phosphate kinase YP_3529 PF01380 SIS domain YP_3530 PF03830 PTS system sorbose subfamily IIB component YP_3531 PF03609 PTS system sorbose-specific iic component YP_3532 PF03613 PTS system mannose/fructose/sorbose family IID component YP_3533 PF03610 PTS system fructose IIA component YP_3534 PF01979 Amidohydrolase family YP_3537 PF04055 Radical SAM superfamily YP_3537 PF13186 Iron-sulfur cluster-binding domain YP_3538 PF00884 Sulfatase YP_3540 PF01116 Fructose-bisphosphate aldolase class-II YP_3543 PF00356 Bacterial regulatory proteins, lacI family YP_3544 PF07690 Major Facilitator Superfamily YP_3545 PF01055 Glycosyl hydrolases family 31 YP_3545 PF13802 Galactose mutarotase-like YP_3545 PF17137 Domain of unknown function (DUF5110) YP_3545 PF16338 Domain of unknown function (DUF4968) YP_3546 PF00356 Bacterial regulatory proteins, lacI family YP_3547 PF02264 LamB porin YP_3549 PF02449 Beta-galactosidase YP_3549 PF08532 Beta-galactosidase trimerisation domain YP_3549 PF08533 Beta-galactosidase C-terminal domain YP_3550 PF07745 Glycosyl hydrolase family 53 YP_3551 PF00528 Binding-protein-dependent transport system inner membrane component YP_3552 PF00528 Binding-protein-dependent transport system inner membrane component YP_3553 PF13416 Bacterial extracellular solute-binding protein YP_3554 PF17912 MalK OB fold domain YP_3554 PF00005 ABC transporter YP_3555 PF00005 ABC transporter YP_3556 PF02653 Branched-chain amino acid transport system / permease component YP_3557 PF13407 Periplasmic binding protein domain YP_3559 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YP_3561 PF03551 Transcriptional regulator PadR-like family YP_3579 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA YP_3580 PF15723 Motility quorum-sensing regulator, toxin of MqsA YP_3583 PF14659 Phage integrase, N-terminal SAM-like domain YP_3583 PF13356 Arm DNA-binding domain YP_3583 PF00589 Phage integrase family YP_3584 PF00152 tRNA synthetases class II (D, K and N) YP_3584 PF01336 OB-fold nucleic acid binding domain YP_3585 PF03462 PCRF domain YP_3585 PF00472 RF-1 domain YP_3586 PF17768 RecJ OB domain YP_3586 PF02272 DHHA1 domain YP_3586 PF01368 DHH family YP_3587 PF10411 Disulfide bond isomerase protein N-terminus YP_3587 PF13098 Thioredoxin-like domain YP_3588 PF00589 Phage integrase family YP_3588 PF02899 Phage integrase, N-terminal SAM-like domain YP_3589 PF00258 Flavodoxin YP_3590 PF06123 Inner membrane protein CreD YP_3591 PF00672 HAMP domain YP_3591 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_3591 PF00512 His Kinase A (phospho-acceptor) domain YP_3592 PF00486 Transcriptional regulatory protein, C terminal YP_3592 PF00072 Response regulator receiver domain YP_3593 PF07254 Membrane-bound toxin component of toxin-antitoxin system YP_3594 PF03937 Flavinator of succinate dehydrogenase YP_3595 PF01571 Aminomethyltransferase folate-binding domain YP_3597 PF03006 Haemolysin-III related YP_3602 PF02347 Glycine cleavage system P-protein YP_3603 PF01597 Glycine cleavage H-protein YP_3604 PF08669 Glycine cleavage T-protein C-terminal barrel domain YP_3604 PF01571 Aminomethyltransferase folate-binding domain YP_3605 PF01494 FAD binding domain YP_3606 PF01494 FAD binding domain YP_3607 PF05195 Aminopeptidase P, N-terminal domain YP_3607 PF00557 Metallopeptidase family M24 YP_3608 PF03695 Uncharacterised protein family (UPF0149) YP_3609 PF05164 Cell division protein ZapA YP_3610 PF01812 5-formyltetrahydrofolate cyclo-ligase family YP_3611 PF01842 ACT domain YP_3611 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_3611 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YP_3612 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YP_3613 PF03466 LysR substrate binding domain YP_3613 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_3614 PF04402 Protein of unknown function (DUF541) YP_3616 PF02796 Helix-turn-helix domain of resolvase YP_3616 PF00665 Integrase core domain YP_3617 PF01695 IstB-like ATP binding protein YP_3619 PF00293 NUDIX domain YP_3620 PF02810 SEC-C motif YP_3620 PF01043 SecA preprotein cross-linking domain YP_3620 PF07517 SecA DEAD-like domain YP_3620 PF07516 SecA Wing and Scaffold domain YP_3621 PF06558 Secretion monitor precursor protein (SecM) YP_3623 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YP_3624 PF12327 FtsZ family, C-terminal domain YP_3624 PF00091 Tubulin/FtsZ family, GTPase domain YP_3625 PF02491 SHS2 domain inserted in FTSA YP_3626 PF08478 POTRA domain, FtsQ-type YP_3626 PF03799 Cell division protein FtsQ YP_3627 PF01820 D-ala D-ala ligase N-terminus YP_3627 PF07478 D-ala D-ala ligase C-terminus YP_3628 PF08245 Mur ligase middle domain YP_3628 PF02875 Mur ligase family, glutamate ligase domain YP_3628 PF01225 Mur ligase family, catalytic domain YP_3629 PF03033 Glycosyltransferase family 28 N-terminal domain YP_3629 PF04101 Glycosyltransferase family 28 C-terminal domain YP_3630 PF01098 Cell cycle protein YP_3631 PF08245 Mur ligase middle domain YP_3631 PF02875 Mur ligase family, glutamate ligase domain YP_3632 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YP_3632 PF00953 Glycosyl transferase family 4 YP_3633 PF01225 Mur ligase family, catalytic domain YP_3633 PF02875 Mur ligase family, glutamate ligase domain YP_3633 PF08245 Mur ligase middle domain YP_3634 PF08245 Mur ligase middle domain YP_3634 PF01225 Mur ligase family, catalytic domain YP_3634 PF02875 Mur ligase family, glutamate ligase domain YP_3635 PF00905 Penicillin binding protein transpeptidase domain YP_3635 PF03717 Penicillin-binding Protein dimerisation domain YP_3636 PF04999 Cell division protein FtsL YP_3637 PF01795 MraW methylase family YP_3638 PF02381 MraZ protein, putative antitoxin-like YP_3639 PF06610 L-alanine exporter YP_3640 PF00356 Bacterial regulatory proteins, lacI family YP_3640 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YP_3641 PF01797 Transposase IS200 like YP_3643 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_3643 PF03466 LysR substrate binding domain YP_3645 PF00501 AMP-binding enzyme YP_3646 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_3646 PF00205 Thiamine pyrophosphate enzyme, central domain YP_3646 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YP_3647 PF10369 Small subunit of acetolactate synthase YP_3648 PF01797 Transposase IS200 like YP_3649 PF08502 LeuA allosteric (dimerisation) domain YP_3649 PF00682 HMGL-like YP_3650 PF00180 Isocitrate/isopropylmalate dehydrogenase YP_3651 PF00330 Aconitase family (aconitate hydratase) YP_3652 PF00694 Aconitase C-terminal domain YP_3653 PF07690 Major Facilitator Superfamily YP_3655 PF12793 Sugar transport-related sRNA regulator N-term YP_3655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YP_3658 PF00528 Binding-protein-dependent transport system inner membrane component YP_3659 PF00005 ABC transporter YP_3660 PF09335 SNARE associated Golgi protein YP_3661 PF03104 DNA polymerase family B, exonuclease domain YP_3661 PF00136 DNA polymerase family B YP_3662 PF12137 RNA polymerase recycling family C-terminal YP_3662 PF00271 Helicase conserved C-terminal domain YP_3662 PF18337 RapA N-terminal Tudor like domain YP_3662 PF18339 RapA N-terminal Tudor like domain 1 YP_3662 PF00176 SNF2 family N-terminal domain YP_3665 PF00691 OmpA family YP_3665 PF05736 OprF membrane domain YP_3672 PF04717 Type VI secretion system, phage-baseplate injector YP_3673 PF00004 ATPase family associated with various cellular activities (AAA) YP_3673 PF07724 AAA domain (Cdc48 subfamily) YP_3673 PF17871 AAA lid domain YP_3673 PF10431 C-terminal, D2-small domain, of ClpB protein YP_3682 PF00849 RNA pseudouridylate synthase YP_3683 PF00226 DnaJ domain YP_3683 PF05099 Tellurite resistance protein TerB YP_3684 PF04453 LPS transport system D YP_3684 PF03968 OstA-like protein YP_3685 PF00639 PPIC-type PPIASE domain YP_3685 PF09312 SurA N-terminal domain YP_3686 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YP_3687 PF00398 Ribosomal RNA adenine dimethylase YP_3688 PF04379 ApaG domain YP_3689 PF00149 Calcineurin-like phosphoesterase YP_3693 PF00186 Dihydrofolate reductase YP_3694 PF12821 Threonine/Serine exporter, ThrE YP_3695 PF06738 Putative threonine/serine exporter YP_3696 PF01810 LysE type translocator YP_3697 PF02142 MGS-like domain YP_3697 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YP_3697 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YP_3698 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YP_3698 PF00117 Glutamine amidotransferase class-I YP_3699 PF01113 Dihydrodipicolinate reductase, N-terminus YP_3699 PF05173 Dihydrodipicolinate reductase, C-terminus YP_3700 PF01797 Transposase IS200 like YP_3702 PF02401 LytB protein YP_3703 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YP_3704 PF01252 Signal peptidase (SPase) II YP_3705 PF06827 Zinc finger found in FPG and IleRS YP_3705 PF00133 tRNA synthetases class I (I, L, M and V) YP_3705 PF08264 Anticodon-binding domain of tRNA YP_3706 PF01687 Riboflavin kinase YP_3706 PF06574 FAD synthetase YP_3708 PF01649 Ribosomal protein S20 YP_3709 PF03466 LysR substrate binding domain YP_3709 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_3710 PF06965 Na+/H+ antiporter 1 YP_3711 PF00226 DnaJ domain YP_3711 PF00684 DnaJ central domain YP_3711 PF01556 DnaJ C terminal domain YP_3712 PF00012 Hsp70 protein YP_3713 PF01184 GPR1/FUN34/yaaH family YP_3715 PF07690 Major Facilitator Superfamily YP_3716 PF00994 Probable molybdopterin binding domain YP_3718 PF00923 Transaldolase/Fructose-6-phosphate aldolase YP_3720 PF03883 Peroxide stress protein YaaA YP_3721 PF14821 Threonine synthase N terminus YP_3721 PF00291 Pyridoxal-phosphate dependent enzyme YP_3722 PF00288 GHMP kinases N terminal domain YP_3722 PF08544 GHMP kinases C terminal YP_3723 PF03447 Homoserine dehydrogenase, NAD binding domain YP_3723 PF00742 Homoserine dehydrogenase YP_3723 PF13840 ACT domain YP_3723 PF01842 ACT domain YP_3723 PF00696 Amino acid kinase family YP_3725 PF00486 Transcriptional regulatory protein, C terminal YP_3725 PF00072 Response regulator receiver domain YP_3726 PF05981 CreA protein YP_3727 PF06445 GyrI-like small molecule binding domain YP_3727 PF12833 Helix-turn-helix domain YP_3728 PF00300 Histidine phosphatase superfamily (branch 1) YP_3729 PF01931 Protein of unknown function DUF84 YP_3730 PF01371 Trp repressor protein YP_3731 PF14718 Soluble lytic murein transglycosylase L domain YP_3731 PF01464 Transglycosylase SLT domain YP_3732 PF00689 Cation transporting ATPase, C-terminus YP_3732 PF00690 Cation transporter/ATPase, N-terminus YP_3734 PF00990 Diguanylate cyclase, GGDEF domain YP_3734 PF17152 Periplasmic sensor domain YP_3735 PF00691 OmpA family YP_3736 PF00005 ABC transporter YP_3736 PF12848 ABC transporter YP_3738 PF13521 AAA domain YP_3738 PF01381 Helix-turn-helix YP_3739 PF18073 Rubredoxin metal binding domain YP_3740 PF18429 Domain of unknown function (DUF5609) YP_3741 PF10144 Bacterial virulence factor haemolysin YP_3742 PF01048 Phosphorylase superfamily YP_3743 PF01676 Metalloenzyme superfamily YP_3744 PF02885 Glycosyl transferase family, helical bundle domain YP_3744 PF00591 Glycosyl transferase family, a/b domain YP_3744 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YP_3745 PF01791 DeoC/LacD family aldolase YP_3746 PF01773 Na+ dependent nucleoside transporter N-terminus YP_3746 PF07670 Nucleoside recognition YP_3746 PF07662 Na+ dependent nucleoside transporter C-terminus YP_3747 PF01026 TatD related DNase YP_3748 PF01734 Patatin-like phospholipase YP_3750 PF04972 BON domain YP_3751 PF16658 Class II release factor RF3, C-terminal domain YP_3751 PF03144 Elongation factor Tu domain 2 YP_3751 PF00009 Elongation factor Tu GTP binding domain YP_3752 PF00583 Acetyltransferase (GNAT) family YP_3753 PF03603 DNA polymerase III psi subunit YP_3754 PF05175 Methyltransferase small domain YP_3754 PF08468 Methyltransferase small domain N-terminal YP_3755 PF07256 Protein of unknown function (DUF1435) YP_3756 PF00990 Diguanylate cyclase, GGDEF domain YP_3757 PF01095 Pectinesterase YP_3760 PF00873 AcrB/AcrD/AcrF family YP_3761 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YP_3765 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YP_3766 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YP_3766 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YP_3767 PF04198 Putative sugar-binding domain YP_3767 PF00325 Bacterial regulatory proteins, crp family YP_3769 PF00005 ABC transporter YP_3770 PF02653 Branched-chain amino acid transport system / permease component YP_3771 PF02653 Branched-chain amino acid transport system / permease component YP_3772 PF13407 Periplasmic binding protein domain YP_3773 PF01791 DeoC/LacD family aldolase YP_3774 PF03992 Antibiotic biosynthesis monooxygenase YP_3775 PF10696 Protein of unknown function (DUF2501) YP_3776 PF05524 PEP-utilising enzyme, N-terminal YP_3776 PF02896 PEP-utilising enzyme, TIM barrel domain YP_3776 PF00381 PTS HPr component phosphorylation site YP_3776 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YP_3776 PF00391 PEP-utilising enzyme, mobile domain YP_3778 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YP_3779 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YP_3780 PF12833 Helix-turn-helix domain YP_3782 PF05987 Bacterial protein of unknown function (DUF898) YP_3790 PF01555 DNA methylase YP_3794 PF12102 Domain of unknown function (DUF3578) YP_3794 PF07728 AAA domain (dynein-related subfamily) YP_3795 PF02796 Helix-turn-helix domain of resolvase YP_3795 PF00665 Integrase core domain YP_3796 PF01695 IstB-like ATP binding protein YP_3798 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_3798 PF03466 LysR substrate binding domain YP_3799 PF02678 Pirin YP_3799 PF17954 Quercetinase C-terminal cupin domain YP_3801 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YP_3802 PF04348 LppC putative lipoprotein YP_3803 PF02021 Uncharacterised protein family UPF0102 YP_3804 PF13580 SIS domain YP_3805 PF04972 BON domain YP_3806 PF00912 Transglycosylase YP_3809 PF00512 His Kinase A (phospho-acceptor) domain YP_3809 PF18415 Histidine kinase receptor ArcB trans-membrane domain YP_3809 PF00989 PAS fold YP_3809 PF00072 Response regulator receiver domain YP_3809 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_3809 PF01627 Hpt domain YP_3810 PF04055 Radical SAM superfamily YP_3810 PF16199 Radical_SAM C-terminal domain YP_3811 PF01645 Conserved region in glutamate synthase YP_3811 PF01493 GXGXG motif YP_3811 PF04898 Glutamate synthase central domain YP_3811 PF00310 Glutamine amidotransferases class-II YP_3812 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YP_3812 PF07992 Pyridine nucleotide-disulphide oxidoreductase YP_3814 PF04386 Stringent starvation protein B YP_3815 PF02798 Glutathione S-transferase, N-terminal domain YP_3815 PF00043 Glutathione S-transferase, C-terminal domain YP_3817 PF00380 Ribosomal protein S9/S16 YP_3818 PF00572 Ribosomal protein L13 YP_3819 PF03969 AFG1-like ATPase YP_3820 PF06295 Protein of unknown function (DUF1043) YP_3821 PF00595 PDZ domain YP_3821 PF13180 PDZ domain YP_3822 PF01797 Transposase IS200 like YP_3823 PF13180 PDZ domain YP_3824 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_3825 PF01722 BolA-like protein YP_3826 PF13466 STAS domain YP_3827 PF05494 MlaC protein YP_3828 PF02470 MlaD protein YP_3829 PF02405 Permease MlaE YP_3830 PF00005 ABC transporter YP_3831 PF01699 Sodium/calcium exchanger protein YP_3832 PF00571 CBS domain YP_3832 PF01380 SIS domain YP_3834 PF06835 Lipopolysaccharide-assembly, LptC-related YP_3835 PF03968 OstA-like protein YP_3836 PF00005 ABC transporter YP_3836 PF12399 Branched-chain amino acid ATP-binding cassette transporter YP_3837 PF04963 Sigma-54 factor, core binding domain YP_3837 PF04552 Sigma-54, DNA binding domain YP_3837 PF00309 Sigma-54 factor, Activator interacting domain (AID) YP_3839 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YP_3840 PF03668 P-loop ATPase protein family YP_3841 PF00381 PTS HPr component phosphorylation site YP_3842 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YP_3842 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YP_3843 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YP_3843 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YP_3844 PF01042 Endoribonuclease L-PSP YP_3846 PF00356 Bacterial regulatory proteins, lacI family YP_3847 PF00367 phosphotransferase system, EIIB YP_3847 PF02378 Phosphotransferase system, EIIC YP_3848 PF11941 Domain of unknown function (DUF3459) YP_3848 PF00128 Alpha amylase, catalytic domain YP_3849 PF01272 Transcription elongation factor, GreA/GreB, C-term YP_3849 PF14760 Rnk N-terminus YP_3850 PF07361 Cytochrome b562 YP_3852 PF01523 Putative modulator of DNA gyrase YP_3853 PF04751 Protein of unknown function (DUF615) YP_3854 PF01337 Barstar (barnase inhibitor) YP_3857 PF04632 Fusaric acid resistance protein family YP_3858 PF13533 Biotin-lipoyl like YP_3859 PF07869 Protein of unknown function (DUF1656) YP_3861 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_3861 PF03466 LysR substrate binding domain YP_3862 PF03466 LysR substrate binding domain YP_3862 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YP_3865 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain YP_3865 PF18413 Neuraminidase-like domain YP_3866 PF12255 Insecticide toxin TcdB middle/C-terminal region YP_3866 PF03534 Salmonella virulence plasmid 65kDa B protein YP_3866 PF12256 Insecticide toxin TcdB middle/N-terminal region YP_3871 PF05785 Rho-activating domain of cytotoxic necrotizing factor YP_3871 PF18807 Tripartite Tc toxins repeat YP_3872 PF18807 Tripartite Tc toxins repeat YP_3872 PF14431 YwqJ-like deaminase YP_3874 PF01523 Putative modulator of DNA gyrase YP_3875 PF00795 Carbon-nitrogen hydrolase YP_3876 PF13116 Protein of unknown function YP_3876 PF13502 AsmA-like C-terminal region YP_3877 PF10150 Ribonuclease E/G family YP_3877 PF00575 S1 RNA binding domain YP_3878 PF02545 Maf-like protein YP_3879 PF04093 rod shape-determining protein MreD YP_3880 PF04085 rod shape-determining protein MreC YP_3882 PF00563 EAL domain YP_3882 PF00990 Diguanylate cyclase, GGDEF domain YP_3882 PF17157 Gammaproteobacterial periplasmic sensor domain YP_3883 PF00107 Zinc-binding dehydrogenase YP_3883 PF08240 Alcohol dehydrogenase GroES-like domain YP_3884 PF00174 Oxidoreductase molybdopterin binding domain YP_3885 PF01794 Ferric reductase like transmembrane component YP_3886 PF01220 Dehydroquinase class II YP_3887 PF00364 Biotin-requiring enzyme YP_3888 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YP_3888 PF00289 Biotin carboxylase, N-terminal domain YP_3888 PF02785 Biotin carboxylase C-terminal domain YP_3889 PF06196 Protein of unknown function (DUF997) YP_3890 PF00474 Sodium:solute symporter family YP_3892 PF01207 Dihydrouridine synthase (Dus) YP_3893 PF02954 Bacterial regulatory protein, Fis family YP_3897 PF07690 Major Facilitator Superfamily YP_3898 PF02627 Carboxymuconolactone decarboxylase family YP_3899 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YP_3899 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YP_3900 PF00753 Metallo-beta-lactamase superfamily YP_3901 PF05433 Glycine zipper 2TM domain YP_3903 PF00313 'Cold-shock' DNA-binding domain YP_3904 PF00313 'Cold-shock' DNA-binding domain YP_3905 PF01797 Transposase IS200 like YP_3908 PF02798 Glutathione S-transferase, N-terminal domain YP_3909 PF01380 SIS domain YP_3909 PF00571 CBS domain YP_3910 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YP_3910 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YP_3912 PF02653 Branched-chain amino acid transport system / permease component YP_3913 PF00005 ABC transporter YP_3915 PF03279 Bacterial lipid A biosynthesis acyltransferase YP_3917 PF00999 Sodium/hydrogen exchanger family YP_3918 PF00860 Permease family YP_3919 PF04221 RelB antitoxin YP_3920 PF00005 ABC transporter YP_3921 PF00528 Binding-protein-dependent transport system inner membrane component YP_3922 PF00296 Luciferase-like monooxygenase YP_3924 PF03358 NADPH-dependent FMN reductase YP_3926 PF00294 pfkB family carbohydrate kinase YP_3927 PF05025 RbsD / FucU transport protein family YP_3928 PF12833 Helix-turn-helix domain YP_3928 PF02311 AraC-like ligand binding domain YP_3929 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YP_3929 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YP_3931 PF00872 Transposase, Mutator family YP_3933 PF03527 RHS protein YP_3933 PF05593 RHS Repeat YP_3935 PF04717 Type VI secretion system, phage-baseplate injector YP_3941 PF05593 RHS Repeat YP_3941 PF03527 RHS protein YP_3941 PF14220 Domain of unknown function (DUF4329) YP_3944 PF04717 Type VI secretion system, phage-baseplate injector YP_3951 PF10431 C-terminal, D2-small domain, of ClpB protein YP_3951 PF17871 AAA lid domain YP_3951 PF07724 AAA domain (Cdc48 subfamily) YP_3951 PF00004 ATPase family associated with various cellular activities (AAA) YP_3959 PF13333 Integrase core domain YP_3959 PF00665 Integrase core domain YP_3959 PF13276 HTH-like domain YP_3960 PF07690 Major Facilitator Superfamily YP_3966 PF03841 L-seryl-tRNA selenium transferase YP_3966 PF12390 Selenocysteine synthase N terminal YP_3967 PF04216 Protein involved in formate dehydrogenase formation YP_3968 PF01292 Prokaryotic cytochrome b561 YP_3969 PF09163 Formate dehydrogenase N, transmembrane YP_3969 PF13247 4Fe-4S dicluster domain YP_3971 PF02634 FdhD/NarQ family YP_3972 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YP_3972 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YP_3973 PF02203 Tar ligand binding domain homologue YP_3973 PF00672 HAMP domain YP_3973 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YP_3976 PF10928 Protein of unknown function (DUF2810) YP_3977 PF05068 Mannitol repressor YP_3978 PF08125 Mannitol dehydrogenase C-terminal domain YP_3978 PF01232 Mannitol dehydrogenase Rossmann domain YP_3979 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YP_3979 PF02378 Phosphotransferase system, EIIC YP_3979 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YP_3980 PF11254 Protein of unknown function (DUF3053) YP_3981 PF02092 Glycyl-tRNA synthetase beta subunit YP_3981 PF05746 DALR anticodon binding domain YP_3982 PF02091 Glycyl-tRNA synthetase alpha subunit YP_3984 PF03352 Methyladenine glycosylase YP_3986 PF13488 Glycine zipper YP_3986 PF00691 OmpA family YP_3988 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YP_3988 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_3989 PF00128 Alpha amylase, catalytic domain YP_3991 PF00155 Aminotransferase class I and II YP_3992 PF02080 TrkA-C domain YP_3992 PF06826 Predicted Permease Membrane Region YP_3993 PF00011 Hsp20/alpha crystallin family YP_3994 PF00011 Hsp20/alpha crystallin family YP_3995 PF07119 Protein of unknown function (DUF1375) YP_3997 PF00291 Pyridoxal-phosphate dependent enzyme YP_3997 PF13291 ACT domain YP_3998 PF02423 Ornithine cyclodeaminase/mu-crystallin family YP_4000 PF00665 Integrase core domain YP_4000 PF13276 HTH-like domain YP_4000 PF13333 Integrase core domain YP_4002 PF00204 DNA gyrase B YP_4002 PF01751 Toprim domain YP_4002 PF00986 DNA gyrase B subunit, carboxyl terminus YP_4002 PF18053 DNA gyrase B subunit insert domain YP_4002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_4003 PF02463 RecF/RecN/SMC N terminal domain YP_4004 PF02767 DNA polymerase III beta subunit, central domain YP_4004 PF00712 DNA polymerase III beta subunit, N-terminal domain YP_4004 PF02768 DNA polymerase III beta subunit, C-terminal domain YP_4005 PF11638 DnaA N-terminal domain YP_4005 PF08299 Bacterial dnaA protein helix-turn-helix YP_4005 PF00308 Bacterial dnaA protein YP_4007 PF00468 Ribosomal protein L34 YP_4008 PF00825 Ribonuclease P YP_4009 PF14849 YidC periplasmic domain YP_4009 PF02096 60Kd inner membrane protein YP_4010 PF10396 GTP-binding protein TrmE N-terminus YP_4010 PF12631 MnmE helical domain YP_4010 PF01926 50S ribosome-binding GTPase YP_4011 PF07055 Enoyl reductase FAD binding domain YP_4011 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YP_4011 PF12241 Trans-2-enoyl-CoA reductase catalytic region YP_4014 PF00860 Permease family YP_4015 PF13419 Haloacid dehalogenase-like hydrolase YP_4016 PF00528 Binding-protein-dependent transport system inner membrane component YP_4017 PF00528 Binding-protein-dependent transport system inner membrane component YP_4018 PF00497 Bacterial extracellular solute-binding proteins, family 3 YP_4020 PF01895 PhoU domain YP_4021 PF00005 ABC transporter YP_4022 PF00528 Binding-protein-dependent transport system inner membrane component YP_4023 PF00528 Binding-protein-dependent transport system inner membrane component YP_4024 PF12849 PBP superfamily domain YP_4025 PF01380 SIS domain YP_4026 PF12804 MobA-like NTP transferase domain YP_4026 PF00132 Bacterial transferase hexapeptide (six repeats) YP_4027 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YP_4027 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YP_4028 PF02874 ATP synthase alpha/beta family, beta-barrel domain YP_4028 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YP_4029 PF00231 ATP synthase YP_4030 PF00306 ATP synthase alpha/beta chain, C terminal domain YP_4030 PF02874 ATP synthase alpha/beta family, beta-barrel domain YP_4030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YP_4031 PF00213 ATP synthase delta (OSCP) subunit YP_4032 PF00430 ATP synthase B/B' CF(0) YP_4033 PF00137 ATP synthase subunit C YP_4034 PF00119 ATP synthase A chain YP_4035 PF03899 ATP synthase I chain YP_4036 PF02527 rRNA small subunit methyltransferase G YP_4037 PF01134 Glucose inhibited division protein A YP_4037 PF13932 GidA associated domain YP_pCD01 PF02796 Helix-turn-helix domain of resolvase YP_pCD01 PF00665 Integrase core domain YP_pCD02 PF01695 IstB-like ATP binding protein YP_pCD06 PF10723 Replication regulatory protein RepB YP_pCD08 PF02387 IncFII RepA protein family YP_pCD13 PF09632 Rac1-binding domain YP_pCD13 PF00069 Protein kinase domain YP_pCD15 PF13683 Integrase core domain YP_pCD15 PF13276 HTH-like domain YP_pCD16 PF13817 IS66 C-terminal element YP_pCD16 PF13007 Transposase C of IS166 homeodomain YP_pCD16 PF03050 Transposase IS66 family YP_pCD16 PF13005 zinc-finger binding domain of transposase IS66 YP_pCD17 PF00102 Protein-tyrosine phosphatase YP_pCD17 PF09013 YopH, N-terminal YP_pCD18 PF13683 Integrase core domain YP_pCD18 PF13276 HTH-like domain YP_pCD20 PF01527 Transposase YP_pCD21 PF09013 YopH, N-terminal YP_pCD22 PF02108 Flagellar assembly protein FliH YP_pCD23 PF06578 YOP proteins translocation protein K (YscK) YP_pCD24 PF01514 Secretory protein of YscJ/FliF family YP_pCD25 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI YP_pCD26 PF09025 YopR, type III needle-polymerisation regulator YP_pCD27 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) YP_pCD28 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF YP_pCD29 PF08988 Type III secretion system, cytoplasmic E component of needle YP_pCD30 PF16697 Inner membrane component of T3SS, cytoplasmic domain YP_pCD30 PF16693 Inner membrane component of T3SS, periplasmic domain YP_pCD32 PF05932 Tir chaperone protein (CesT) family YP_pCD33 PF17551 Family of unknown function (DUF5463) YP_pCD34 PF02311 AraC-like ligand binding domain YP_pCD34 PF12833 Helix-turn-helix domain YP_pCD36 PF01312 FlhB HrpN YscU SpaS Family YP_pCD37 PF01311 Bacterial export proteins, family 1 YP_pCD38 PF01313 Bacterial export proteins, family 3 YP_pCD39 PF00813 FliP family YP_pCD40 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YP_pCD41 PF02120 Flagellar hook-length control protein FliK YP_pCD42 PF07321 Type III secretion protein YscO YP_pCD43 PF02874 ATP synthase alpha/beta family, beta-barrel domain YP_pCD43 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YP_pCD43 PF18269 T3SS EscN ATPase C-terminal domain YP_pCD44 PF07201 HrpJ-like domain YP_pCD45 PF09059 TyeA YP_pCD47 PF09474 Type III secretion system YscX (type_III_YscX) YP_pCD49 PF00771 FHIPEP family YP_pCD50 PF09621 Type III secretion system regulator (LcrR) YP_pCD51 PF07216 LcrG protein YP_pCD52 PF04792 V antigen (LcrV) protein YP_pCD53 PF07720 Tetratricopeptide repeat YP_pCD54 PF04888 Secretion system effector C (SseC) like family YP_pCD55 PF05844 YopD protein YP_pCD57 PF13610 DDE domain YP_pCD60 PF12468 Type III secretion system leucine rich repeat protein YP_pCD60 PF12468 Type III secretion system leucine rich repeat protein YP_pCD66 PF05932 Tir chaperone protein (CesT) family YP_pCD67 PF03543 Yersinia/Haemophilus virulence surface antigen YP_pCD72 PF00665 Integrase core domain YP_pCD72 PF13276 HTH-like domain YP_pCD72 PF13333 Integrase core domain YP_pCD74 PF13614 AAA domain YP_pCD75 PF02195 ParB-like nuclease domain YP_pCD75 PF18090 Centromere-binding protein HTH domain YP_pCD78 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH YP_pCD81 PF09020 YopE, N terminal YP_pCD81 PF03545 Yersinia virulence determinant (YopE) YP_pCD82 PF05932 Tir chaperone protein (CesT) family YP_pCD83 PF13276 HTH-like domain YP_pCD83 PF13683 Integrase core domain YP_pCD85 PF00665 Integrase core domain YP_pCD88 PF13276 HTH-like domain YP_pCD88 PF13683 Integrase core domain YP_pCD89 PF01527 Transposase YP_pCD92 PF00239 Resolvase, N terminal domain YP_pCD92 PF02796 Helix-turn-helix domain of resolvase YP_pCD93 PF01526 Tn3 transposase DDE domain YP_pCD93 PF13700 Domain of unknown function (DUF4158) YP_pCD97 PF18272 single-stranded DNA binding TraI N-terminal subdomain YP_pCD97 PF07057 DNA helicase TraI YP_pCD97 PF18340 DNA relaxase TraI 2B/2B-like domain YP_pCD97 PF08751 TrwC relaxase YP_pCRY01 PF02387 IncFII RepA protein family YP_pCRY04 PF02357 Transcription termination factor nusG YP_pCRY08 PF04956 TrbC/VIRB2 family YP_pCRY09 PF03135 CagE, TrbE, VirB family, component of type IV transporter system YP_pCRY14 PF03524 Conjugal transfer protein YP_pCRY15 PF03743 Bacterial conjugation TrbI-like protein YP_pCRY16 PF00437 Type II/IV secretion system protein YP_pCRY24 PF00565 Staphylococcal nuclease homologue YP_pMT001 PF02796 Helix-turn-helix domain of resolvase YP_pMT001 PF00665 Integrase core domain YP_pMT002 PF01695 IstB-like ATP binding protein YP_pMT003 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YP_pMT005 PF07484 Phage Tail Collar Domain YP_pMT005 PF08400 Prophage tail fibre N-terminal YP_pMT005 PF07484 Phage Tail Collar Domain YP_pMT005 PF08400 Prophage tail fibre N-terminal YP_pMT005 PF03335 Phage tail fibre repeat YP_pMT005 PF03335 Phage tail fibre repeat YP_pMT030 PF03412 Peptidase C39 family YP_pMT030 PF00005 ABC transporter YP_pMT030 PF00664 ABC transporter transmembrane region YP_pMT031 PF17762 HTH domain found in ParB protein YP_pMT031 PF02195 ParB-like nuclease domain YP_pMT032 PF02195 ParB-like nuclease domain YP_pMT032 PF17762 HTH domain found in ParB protein YP_pMT033 PF00270 DEAD/DEAH box helicase YP_pMT033 PF00271 Helicase conserved C-terminal domain YP_pMT033 PF17191 RecG wedge domain YP_pMT043 PF01797 Transposase IS200 like YP_pMT046 PF00268 Ribonucleotide reductase, small chain YP_pMT047 PF02867 Ribonucleotide reductase, barrel domain YP_pMT047 PF00317 Ribonucleotide reductase, all-alpha domain YP_pMT047 PF03477 ATP cone domain YP_pMT057 PF01051 Initiator Replication protein YP_pMT066 PF00154 recA bacterial DNA recombination protein YP_pMT068 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YP_pMT068 PF01367 5'-3' exonuclease, C-terminal SAM fold YP_pMT074 PF00665 Integrase core domain YP_pMT074 PF02796 Helix-turn-helix domain of resolvase YP_pMT075 PF01695 IstB-like ATP binding protein YP_pMT077 PF06213 Cobalamin biosynthesis protein CobT YP_pMT077 PF11775 Cobalamin biosynthesis protein CobT VWA domain YP_pMT082 PF09255 Caf1 Capsule antigen YP_pMT083 PF00577 Outer membrane usher protein YP_pMT083 PF13954 PapC N-terminal domain YP_pMT083 PF13953 PapC C-terminal domain YP_pMT084 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YP_pMT084 PF02753 Pili assembly chaperone PapD, C-terminal domain YP_pMT085 PF12833 Helix-turn-helix domain YP_pMT085 PF06445 GyrI-like small molecule binding domain YP_pMT095 PF01695 IstB-like ATP binding protein YP_pMT096 PF02796 Helix-turn-helix domain of resolvase YP_pMT096 PF00665 Integrase core domain YP_pMT097 PF02195 ParB-like nuclease domain YP_pMT098 PF06006 Bacterial protein of unknown function (DUF905) YP_pMT103 PF07128 Protein of unknown function (DUF1380) YP_pMT105 PF01555 DNA methylase YP_pMT110 PF00817 impB/mucB/samB family YP_pMT110 PF13438 Domain of unknown function (DUF4113) YP_pMT110 PF11799 impB/mucB/samB family C-terminal domain YP_pMT112 PF02195 ParB-like nuclease domain YP_pMT112 PF08775 ParB family YP_pMT113 PF13614 AAA domain YP_pMT113 PF18607 ParA helix turn helix domain YP_pMT116 PF02796 Helix-turn-helix domain of resolvase YP_pMT116 PF00239 Resolvase, N terminal domain YP_pMT117 PF04754 Putative transposase, YhgA-like YP_pMT120 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) YP_pMT124 PF04754 Putative transposase, YhgA-like YP_pMT125 PF01548 Transposase YP_pMT125 PF02371 Transposase IS116/IS110/IS902 family YP_pMT126 PF00872 Transposase, Mutator family YP_pPCP01 PF02796 Helix-turn-helix domain of resolvase YP_pPCP01 PF00665 Integrase core domain YP_pPCP02 PF01695 IstB-like ATP binding protein YP_pPCP03 PF01815 Rop protein YP_pPCP08 PF01278 Omptin family YP_pPCP10 PF05973 Phage derived protein Gp49-like (DUF891)