YP_0001	PF00258	Flavodoxin
YP_0002	PF01037	AsnC family
YP_0002	PF13412	Winged helix-turn-helix DNA-binding
YP_0003	PF03590	Aspartate-ammonia ligase
YP_0004	PF05762	VWA domain containing CoxE-like protein
YP_0005	PF07728	AAA domain (dynein-related subfamily)
YP_0005	PF12592	Protein of unknown function (DUF3763)
YP_0006	PF02705	YP_0006
YP_0007	PF05025	RbsD / FucU transport protein family
YP_0008	PF00294	pfkB family carbohydrate kinase
YP_0010	PF07690	Major Facilitator Superfamily
YP_0011	PF00392	Bacterial regulatory proteins, gntR family
YP_0011	PF07729	FCD domain
YP_0012	PF00872	YP_0012
YP_0013	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
YP_0014	PF12804	MobA-like NTP transferase domain
YP_0015	PF06288	Protein of unknown function (DUF1040)
YP_0016	PF01636	Phosphotransferase enzyme family
YP_0017	PF01323	DSBA-like thioredoxin domain
YP_0018	PF00476	DNA polymerase family A
YP_0018	PF01367	5'-3' exonuclease, C-terminal SAM fold
YP_0018	PF01612	3'-5' exonuclease
YP_0018	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
YP_0019	PF01797	Transposase IS200 like
YP_0020	PF01926	50S ribosome-binding GTPase
YP_0021	PF04220	YP_0021
YP_0022	PF04055	Radical SAM superfamily
YP_0022	PF06969	HemN C-terminal domain
YP_0023	PF00072	Response regulator receiver domain
YP_0023	PF00158	Sigma-54 interaction domain
YP_0023	PF02954	Bacterial regulatory protein, Fis family
YP_0024	PF00512	His Kinase A (phospho-acceptor) domain
YP_0024	PF00989	PAS fold
YP_0024	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_0025	PF00120	Glutamine synthetase, catalytic domain
YP_0025	PF03951	Glutamine synthetase, beta-Grasp domain
YP_0027	PF00009	Elongation factor Tu GTP binding domain
YP_0027	PF00679	Elongation factor G C-terminus
YP_0027	PF03144	Elongation factor Tu domain 2
YP_0028	PF13419	Haloacid dehalogenase-like hydrolase
YP_0029	PF03631	YP_0029
YP_0030	PF02580	D-Tyr-tRNA(Tyr) deacylase
YP_0031	PF01695	IstB-like ATP binding protein
YP_0032	PF00665	Integrase core domain
YP_0032	PF02796	Helix-turn-helix domain of resolvase
YP_0033	PF00583	Acetyltransferase (GNAT) family
YP_0033	PF09500	Putative thioesterase (yiiD_Cterm)
YP_0035	PF00860	Permease family
YP_0036	PF03616	YP_0036
YP_0037	PF00270	DEAD/DEAH box helicase
YP_0037	PF00271	Helicase conserved C-terminal domain
YP_0037	PF17191	YP_0037
YP_0038	PF00588	SpoU rRNA Methylase family
YP_0038	PF12105	SpoU, rRNA methylase, C-terminal
YP_0039	PF02824	TGS domain
YP_0039	PF04607	Region found in RelA / SpoT proteins
YP_0039	PF13291	ACT domain
YP_0039	PF13328	HD domain
YP_0040	PF01192	RNA polymerase Rpb6
YP_0041	PF00625	Guanylate kinase
YP_0042	PF01653	NAD-dependent DNA ligase adenylation domain
YP_0042	PF03120	NAD-dependent DNA ligase OB-fold domain
YP_0043	PF03458	YP_0043
YP_0044	PF03755	YP_0044
YP_0044	PF08340	YP_0044
YP_0045	PF01138	3' exoribonuclease family, domain 1
YP_0045	PF03725	3' exoribonuclease family, domain 2
YP_0046	PF00156	Phosphoribosyl transferase domain
YP_0047	PF00440	Bacterial regulatory proteins, tetR family
YP_0048	PF00692	dUTPase
YP_0049	PF02441	Flavoprotein
YP_0049	PF04127	DNA / pantothenate metabolism flavoprotein
YP_0050	PF04002	RadC-like JAB domain
YP_0051	PF00830	Ribosomal L28 family
YP_0052	PF00471	Ribosomal protein L33
YP_0053	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
YP_0053	PF06827	Zinc finger found in FPG and IleRS
YP_0053	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
YP_0054	PF01467	Cytidylyltransferase
YP_0055	PF00535	Glycosyl transferase family 2
YP_0056	PF00534	Glycosyl transferases group 1
YP_0056	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
YP_0057	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YP_0058	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YP_0059	PF01370	NAD dependent epimerase/dehydratase family
YP_0060	PF00155	Aminotransferase class I and II
YP_0061	PF00107	Zinc-binding dehydrogenase
YP_0061	PF08240	Alcohol dehydrogenase GroES-like domain
YP_0063	PF01551	Peptidase family M23
YP_0064	PF01676	Metalloenzyme superfamily
YP_0064	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
YP_0065	PF00581	Rhodanese-like domain
YP_0066	PF00462	Glutaredoxin
YP_0067	PF02556	Preprotein translocase subunit SecB
YP_0068	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
YP_0068	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
YP_0070	PF00132	Bacterial transferase hexapeptide (six repeats)
YP_0070	PF06426	Serine acetyltransferase, N-terminal
YP_0071	PF00588	SpoU rRNA Methylase family
YP_0072	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
YP_0072	PF02805	Metal binding domain of Ada
YP_0072	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
YP_0072	PF12833	Helix-turn-helix domain
YP_0073	PF00512	His Kinase A (phospho-acceptor) domain
YP_0073	PF00672	HAMP domain
YP_0073	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_0073	PF16527	YP_0073
YP_0074	PF00072	Response regulator receiver domain
YP_0074	PF00486	Transcriptional regulatory protein, C terminal
YP_0075	PF07813	LTXXQ motif family protein
YP_0077	PF04754	YP_0077
YP_0079	PF01545	Cation efflux family
YP_0079	PF16916	YP_0079
YP_0080	PF00365	Phosphofructokinase
YP_0081	PF13531	Bacterial extracellular solute-binding protein
YP_0082	PF13531	Bacterial extracellular solute-binding protein
YP_0083	PF00939	Sodium:sulfate symporter transmembrane region
YP_0085	PF01695	IstB-like ATP binding protein
YP_0086	PF00665	Integrase core domain
YP_0086	PF02796	Helix-turn-helix domain of resolvase
YP_0087	PF02585	GlcNAc-PI de-N-acetylase
YP_0088	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_0088	PF03466	LysR substrate binding domain
YP_0089	PF00121	Triosephosphate isomerase
YP_0090	PF07305	YP_0090
YP_0091	PF05656	YP_0091
YP_0092	PF00175	Oxidoreductase NAD-binding domain
YP_0092	PF00970	Oxidoreductase FAD-binding domain
YP_0093	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
YP_0094	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YP_0094	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YP_0095	PF00230	Major intrinsic protein
YP_0097	PF06005	Protein of unknown function (DUF904)
YP_0098	PF01797	Transposase IS200 like
YP_0100	PF00005	ABC transporter
YP_0100	PF00664	ABC transporter transmembrane region
YP_0100	PF03412	Peptidase C39 family
YP_0101	PF13437	HlyD family secretion protein
YP_0104	PF14016	YP_0104
YP_0105	PF03737	Demethylmenaquinone methyltransferase
YP_0106	PF01040	UbiA prenyltransferase family
YP_0107	PF00004	ATPase family associated with various cellular activities (AAA)
YP_0107	PF07724	AAA domain (Cdc48 subfamily)
YP_0107	PF10431	C-terminal, D2-small domain, of ClpB protein
YP_0108	PF00227	Proteasome subunit
YP_0109	PF05036	Sporulation related domain
YP_0110	PF00356	Bacterial regulatory proteins, lacI family
YP_0110	PF13377	Periplasmic binding protein-like domain
YP_0111	PF00270	DEAD/DEAH box helicase
YP_0111	PF00271	Helicase conserved C-terminal domain
YP_0112	PF01197	Ribosomal protein L31
YP_0113	PF05360	YP_0113
YP_0116	PF01340	Met Apo-repressor, MetJ
YP_0117	PF01053	Cys/Met metabolism PLP-dependent enzyme
YP_0118	PF00696	Amino acid kinase family
YP_0118	PF00742	Homoserine dehydrogenase
YP_0118	PF03447	Homoserine dehydrogenase, NAD binding domain
YP_0119	PF02219	Methylenetetrahydrofolate reductase
YP_0120	PF00665	Integrase core domain
YP_0120	PF13276	YP_0120
YP_0121	PF13518	Helix-turn-helix domain
YP_0122	PF00455	YP_0122
YP_0122	PF08220	DeoR-like helix-turn-helix domain
YP_0123	PF01694	Rhomboid family
YP_0123	PF12122	Protein of unknown function (DUF3582)
YP_0124	PF00581	Rhodanese-like domain
YP_0125	PF00196	Bacterial regulatory proteins, luxR family
YP_0127	PF02446	4-alpha-glucanotransferase
YP_0128	PF01106	NifU-like domain
YP_0128	PF01521	Iron-sulphur cluster biosynthesis
YP_0129	PF00156	Phosphoribosyl transferase domain
YP_0130	PF00561	alpha/beta hydrolase fold
YP_0131	PF07338	Protein of unknown function (DUF1471)
YP_0132	PF09012	FeoC like transcriptional regulator
YP_0133	PF02421	Ferrous iron transport protein B
YP_0133	PF07664	YP_0133
YP_0133	PF07670	Nucleoside recognition
YP_0134	PF04023	FeoA domain
YP_0135	PF00575	S1 RNA binding domain
YP_0135	PF09371	Tex-like protein N-terminal domain
YP_0135	PF12836	Helix-hairpin-helix motif
YP_0135	PF16921	YP_0135
YP_0136	PF01272	Transcription elongation factor, GreA/GreB, C-term
YP_0136	PF03449	Transcription elongation factor, N-terminal
YP_0137	PF00072	Response regulator receiver domain
YP_0137	PF00486	Transcriptional regulatory protein, C terminal
YP_0138	PF00512	His Kinase A (phospho-acceptor) domain
YP_0138	PF00672	HAMP domain
YP_0138	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_0139	PF01293	Phosphoenolpyruvate carboxykinase
YP_0140	PF01430	Hsp33 protein
YP_0141	PF01479	S4 domain
YP_0142	PF13419	Haloacid dehalogenase-like hydrolase
YP_0143	PF07095	Intracellular growth attenuator protein IgaA
YP_0145	PF00293	NUDIX domain
YP_0146	PF00905	Penicillin binding protein transpeptidase domain
YP_0146	PF00912	Transglycosylase
YP_0146	PF17092	YP_0146
YP_0147	PF11104	Type IV pilus assembly protein PilM;
YP_0148	PF05137	YP_0148
YP_0150	PF10748	YP_0150
YP_0152	PF00263	YP_0152
YP_0152	PF03958	Bacterial type II/III secretion system short domain
YP_0153	PF01202	Shikimate kinase
YP_0154	PF01761	3-dehydroquinate synthase
YP_0155	PF05036	Sporulation related domain
YP_0156	PF02086	D12 class N6 adenine-specific DNA methyltransferase
YP_0157	PF00834	Ribulose-phosphate 3 epimerase family
YP_0158	PF13419	Haloacid dehalogenase-like hydrolase
YP_0159	PF00579	tRNA synthetases class I (W and Y)
YP_0160	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
YP_0160	PF10414	Sirohaem synthase dimerisation region
YP_0160	PF13241	Putative NAD(P)-binding
YP_0160	PF14824	Sirohaem biosynthesis protein central
YP_0161	PF01226	Formate/nitrite transporter
YP_0162	PF13806	Rieske-like [2Fe-2S] domain
YP_0163	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
YP_0163	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
YP_0163	PF04324	BFD-like [2Fe-2S] binding domain
YP_0163	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YP_0164	PF07969	Amidohydrolase family
YP_0165	PF07690	Major Facilitator Superfamily
YP_0166	PF00593	TonB dependent receptor
YP_0166	PF07715	TonB-dependent Receptor Plug Domain
YP_0167	PF00356	Bacterial regulatory proteins, lacI family
YP_0167	PF13377	Periplasmic binding protein-like domain
YP_0169	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YP_0170	PF05872	YP_0170
YP_0171	PF00117	Glutamine amidotransferase class-I
YP_0172	PF00202	Aminotransferase class-III
YP_0173	PF12805	YP_0173
YP_0173	PF13515	YP_0173
YP_0174	PF00027	Cyclic nucleotide-binding domain
YP_0174	PF00325	Bacterial regulatory proteins, crp family
YP_0175	PF02566	OsmC-like protein
YP_0176	PF06836	YP_0176
YP_0177	PF00485	Phosphoribulokinase / Uridine kinase family
YP_0178	PF06794	Uncharacterised protein family (UPF0270)
YP_0179	PF00561	alpha/beta hydrolase fold
YP_0180	PF01810	YP_0180
YP_0181	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YP_0182	PF00005	ABC transporter
YP_0183	PF00528	Binding-protein-dependent transport system inner membrane component
YP_0184	PF02668	Taurine catabolism dioxygenase TauD, TfdA family
YP_0186	PF00535	Glycosyl transferase family 2
YP_0187	PF00005	ABC transporter
YP_0187	PF12848	ABC transporter
YP_0188	PF02525	Flavodoxin-like fold
YP_0189	PF00999	Sodium/hydrogen exchanger family
YP_0189	PF02254	TrkA-N domain
YP_0190	PF09526	YP_0190
YP_0191	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YP_0193	PF04102	SlyX
YP_0194	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YP_0194	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
YP_0195	PF08348	YP_0195
YP_0195	PF13309	YP_0195
YP_0196	PF02635	DsrE/DsrF-like family
YP_0197	PF02635	DsrE/DsrF-like family
YP_0198	PF04077	DsrH like protein
YP_0199	PF00164	Ribosomal protein S12/S23
YP_0200	PF00177	Ribosomal protein S7p/S5e
YP_0201	PF00009	Elongation factor Tu GTP binding domain
YP_0201	PF00679	Elongation factor G C-terminus
YP_0201	PF03144	Elongation factor Tu domain 2
YP_0201	PF03764	Elongation factor G, domain IV
YP_0201	PF14492	Elongation Factor G, domain II
YP_0202	PF00009	Elongation factor Tu GTP binding domain
YP_0202	PF03143	Elongation factor Tu C-terminal domain
YP_0202	PF03144	Elongation factor Tu domain 2
YP_0203	PF01797	Transposase IS200 like
YP_0204	PF04324	BFD-like [2Fe-2S] binding domain
YP_0205	PF00210	Ferritin-like domain
YP_0206	PF00338	Ribosomal protein S10p/S20e
YP_0207	PF00297	Ribosomal protein L3
YP_0208	PF00573	Ribosomal protein L4/L1 family
YP_0209	PF00276	Ribosomal protein L23
YP_0210	PF00181	Ribosomal Proteins L2, RNA binding domain
YP_0210	PF03947	Ribosomal Proteins L2, C-terminal domain
YP_0211	PF00203	Ribosomal protein S19
YP_0212	PF00237	Ribosomal protein L22p/L17e
YP_0213	PF00189	Ribosomal protein S3, C-terminal domain
YP_0213	PF07650	KH domain
YP_0214	PF00252	Ribosomal protein L16p/L10e
YP_0215	PF00831	Ribosomal L29 protein
YP_0216	PF00366	Ribosomal protein S17
YP_0217	PF00238	Ribosomal protein L14p/L23e
YP_0218	PF00467	KOW motif
YP_0218	PF17136	YP_0218
YP_0219	PF00281	Ribosomal protein L5
YP_0219	PF00673	ribosomal L5P family C-terminus
YP_0220	PF00253	Ribosomal protein S14p/S29e
YP_0221	PF00410	Ribosomal protein S8
YP_0222	PF00347	Ribosomal protein L6
YP_0223	PF00861	Ribosomal L18p/L5e family
YP_0224	PF00333	Ribosomal protein S5, N-terminal domain
YP_0224	PF03719	Ribosomal protein S5, C-terminal domain
YP_0225	PF00327	Ribosomal protein L30p/L7e
YP_0226	PF00828	Ribosomal protein L18e/L15
YP_0227	PF00344	SecY translocase
YP_0228	PF00444	Ribosomal protein L36
YP_0229	PF00416	Ribosomal protein S13/S18
YP_0230	PF00411	Ribosomal protein S11
YP_0231	PF00163	Ribosomal protein S4/S9 N-terminal domain
YP_0231	PF01479	S4 domain
YP_0232	PF01000	RNA polymerase Rpb3/RpoA insert domain
YP_0232	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
YP_0232	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
YP_0233	PF01196	Ribosomal protein L17
YP_0234	PF13411	MerR HTH family regulatory protein
YP_0235	PF03889	YP_0235
YP_0236	PF01741	Large-conductance mechanosensitive channel, MscL
YP_0237	PF02080	TrkA-C domain
YP_0237	PF02254	TrkA-N domain
YP_0238	PF01029	NusB family
YP_0238	PF01189	NOL1/NOP2/sun family
YP_0239	PF00551	Formyl transferase
YP_0239	PF02911	Formyl transferase, C-terminal domain
YP_0240	PF01327	Polypeptide deformylase
YP_0241	PF02481	DNA recombination-mediator protein A
YP_0242	PF04361	YP_0242
YP_0243	PF01396	YP_0243
YP_0244	PF01300	Telomere recombination
YP_0245	PF01488	Shikimate / quinate 5-dehydrogenase
YP_0245	PF08501	Shikimate dehydrogenase substrate binding domain
YP_0246	PF00132	Bacterial transferase hexapeptide (six repeats)
YP_0247	PF01527	Transposase
YP_0248	PF13276	YP_0248
YP_0248	PF13683	YP_0248
YP_0249	PF01695	IstB-like ATP binding protein
YP_0250	PF00665	Integrase core domain
YP_0250	PF02796	Helix-turn-helix domain of resolvase
YP_0251	PF01797	Transposase IS200 like
YP_0252	PF03884	Domain of unknown function (DUF329)
YP_0253	PF07072	Protein of unknown function (DUF1342)
YP_0254	PF01121	Dephospho-CoA kinase
YP_0256	PF00478	IMP dehydrogenase / GMP reductase domain
YP_0257	PF00482	Type II secretion system (T2SS), protein F
YP_0258	PF00437	Type II/IV secretion system protein
YP_0259	PF07963	Prokaryotic N-terminal methylation motif
YP_0260	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
YP_0260	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
YP_0261	PF01510	N-acetylmuramoyl-L-alanine amidase
YP_0262	PF17113	YP_0262
YP_0263	PF00324	Amino acid permease
YP_0264	PF00392	Bacterial regulatory proteins, gntR family
YP_0264	PF07729	FCD domain
YP_0265	PF00456	Transketolase, thiamine diphosphate binding domain
YP_0266	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
YP_0266	PF00364	Biotin-requiring enzyme
YP_0266	PF02817	e3 binding domain
YP_0268	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YP_0268	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YP_0269	PF01797	Transposase IS200 like
YP_0270	PF00330	Aconitase family (aconitate hydratase)
YP_0270	PF06434	Aconitate hydratase 2 N-terminus
YP_0270	PF11791	Aconitate B N-terminal domain
YP_0271	PF06062	YP_0271
YP_0272	PF00892	EamA-like transporter family
YP_0273	PF02675	S-adenosylmethionine decarboxylase
YP_0274	PF01564	Spermine/spermidine synthase
YP_0274	PF17284	YP_0274
YP_0275	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
YP_0276	PF00394	Multicopper oxidase
YP_0276	PF07731	Multicopper oxidase
YP_0276	PF07732	Multicopper oxidase
YP_0276	PF10518	TAT (twin-arginine translocation) pathway signal sequence
YP_0277	PF00156	Phosphoribosyl transferase domain
YP_0278	PF00484	Carbonic anhydrase
YP_0279	PF00005	ABC transporter
YP_0280	PF01061	YP_0280
YP_0282	PF02261	Aspartate decarboxylase
YP_0283	PF02569	Pantoate-beta-alanine ligase
YP_0284	PF02548	Ketopantoate hydroxymethyltransferase
YP_0285	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
YP_0286	PF01743	Poly A polymerase head domain
YP_0286	PF12626	Polymerase A arginine-rich C-terminus
YP_0286	PF12627	Probable RNA and SrmB- binding site of polymerase A
YP_0287	PF00749	tRNA synthetases class I (E and Q), catalytic domain
YP_0288	PF01258	Prokaryotic dksA/traR C4-type zinc finger
YP_0289	PF03749	Sugar fermentation stimulation protein
YP_0290	PF02834	LigT like Phosphoesterase
YP_0291	PF00270	DEAD/DEAH box helicase
YP_0291	PF00271	Helicase conserved C-terminal domain
YP_0291	PF04408	Helicase associated domain (HA2)
YP_0291	PF08482	YP_0291
YP_0292	PF00905	Penicillin binding protein transpeptidase domain
YP_0292	PF00912	Transglycosylase
YP_0292	PF14812	YP_0292
YP_0292	PF14814	Bifunctional transglycosylase second domain
YP_0293	PF00005	ABC transporter
YP_0294	PF01497	Periplasmic binding protein
YP_0295	PF01032	FecCD transport family
YP_0296	PF00202	Aminotransferase class-III
YP_0297	PF00654	Voltage gated chloride channel
YP_0298	PF01521	Iron-sulphur cluster biosynthesis
YP_0299	PF03458	YP_0299
YP_0300	PF01497	Periplasmic binding protein
YP_0301	PF01048	Phosphorylase superfamily
YP_0302	PF01966	HD domain
YP_0302	PF13286	Phosphohydrolase-associated domain
YP_0303	PF00595	PDZ domain (Also known as DHR or GLGF)
YP_0303	PF13180	PDZ domain
YP_0303	PF13365	Trypsin-like peptidase domain
YP_0304	PF00072	Response regulator receiver domain
YP_0304	PF00512	His Kinase A (phospho-acceptor) domain
YP_0304	PF01627	Hpt domain
YP_0304	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_0304	PF09984	YP_0304
YP_0306	PF02824	TGS domain
YP_0306	PF04607	Region found in RelA / SpoT proteins
YP_0306	PF13291	ACT domain
YP_0306	PF13328	HD domain
YP_0308	PF03819	MazG nucleotide pyrophosphohydrolase domain
YP_0309	PF00117	Glutamine amidotransferase class-I
YP_0309	PF06418	CTP synthase N-terminus
YP_0310	PF00113	Enolase, C-terminal TIM barrel domain
YP_0310	PF03952	Enolase, N-terminal domain
YP_0311	PF00080	Copper/zinc superoxide dismutase (SODC)
YP_0312	PF04055	Radical SAM superfamily
YP_0312	PF13394	4Fe-4S single cluster domain
YP_0313	PF01242	6-pyruvoyl tetrahydropterin synthase
YP_0314	PF00175	Oxidoreductase NAD-binding domain
YP_0314	PF00258	Flavodoxin
YP_0314	PF00667	FAD binding domain
YP_0315	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
YP_0315	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
YP_0317	PF15919	YP_0317
YP_0318	PF07927	YcfA-like protein
YP_0321	PF01507	Phosphoadenosine phosphosulfate reductase family
YP_0322	PF00009	Elongation factor Tu GTP binding domain
YP_0323	PF01583	Adenylylsulphate kinase
YP_0324	PF12084	YP_0324
YP_0325	PF04977	Septum formation initiator
YP_0326	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
YP_0327	PF02542	YgbB family
YP_0328	PF01142	tRNA pseudouridine synthase D (TruD)
YP_0329	PF01975	Survival protein SurE
YP_0330	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
YP_0331	PF01476	LysM domain
YP_0331	PF01551	Peptidase family M23
YP_0332	PF00140	Sigma-70 factor, region 1
YP_0332	PF04539	Sigma-70 region 3
YP_0332	PF04542	Sigma-70 region 2
YP_0332	PF04545	Sigma-70, region 4
YP_0333	PF00488	MutS domain V
YP_0333	PF01624	MutS domain I
YP_0333	PF05188	MutS domain II
YP_0333	PF05190	MutS family domain IV
YP_0333	PF05192	MutS domain III
YP_0334	PF02502	Ribose/Galactose Isomerase
YP_0335	PF00107	Zinc-binding dehydrogenase
YP_0335	PF08240	Alcohol dehydrogenase GroES-like domain
YP_0336	PF13561	Enoyl-(Acyl carrier protein) reductase
YP_0337	PF02733	Dak1 domain
YP_0338	PF02734	DAK2 domain
YP_0339	PF04198	Putative sugar-binding domain
YP_0339	PF13518	Helix-turn-helix domain
YP_0340	PF02040	YP_0340
YP_0341	PF01022	Bacterial regulatory protein, arsR family
YP_0342	PF04703	FaeA-like protein
YP_0344	PF00497	Bacterial extracellular solute-binding proteins, family 3
YP_0345	PF00034	Cytochrome c
YP_0345	PF03150	Di-haem cytochrome c peroxidase
YP_0345	PF14376	YP_0345
YP_0347	PF00593	TonB dependent receptor
YP_0347	PF07715	TonB-dependent Receptor Plug Domain
YP_0348	PF07906	YP_0348
YP_0350	PF00557	Metallopeptidase family M24
YP_0351	PF11903	YP_0351
YP_0352	PF05681	YP_0352
YP_0352	PF05683	Fumarase C-terminus
YP_0353	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YP_0353	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YP_0354	PF01261	Xylose isomerase-like TIM barrel
YP_0355	PF02653	YP_0355
YP_0356	PF02653	YP_0356
YP_0357	PF00005	ABC transporter
YP_0358	PF13407	Periplasmic binding protein domain
YP_0359	PF00455	YP_0359
YP_0359	PF08220	DeoR-like helix-turn-helix domain
YP_0360	PF00596	Class II Aldolase and Adducin N-terminal domain
YP_0361	PF00384	Molybdopterin oxidoreductase
YP_0361	PF01568	Molydopterin dinucleotide binding domain
YP_0361	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YP_0362	PF12800	4Fe-4S binding domain
YP_0362	PF13247	4Fe-4S dicluster domain
YP_0363	PF04976	YP_0363
YP_0364	PF02613	Nitrate reductase delta subunit
YP_0365	PF01292	Prokaryotic cytochrome b561
YP_0366	PF07361	Cytochrome b562
YP_0367	PF00141	Peroxidase
YP_0368	PF13407	Periplasmic binding protein domain
YP_0369	PF10054	Predicted periplasmic lipoprotein (DUF2291)
YP_0370	PF00005	ABC transporter
YP_0371	PF02653	YP_0371
YP_0372	PF00456	Transketolase, thiamine diphosphate binding domain
YP_0373	PF02779	Transketolase, pyrimidine binding domain
YP_0373	PF02780	Transketolase, C-terminal domain
YP_0374	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YP_0374	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YP_0375	PF02952	L-fucose isomerase, C-terminal domain
YP_0376	PF01047	MarR family
YP_0376	PF04198	Putative sugar-binding domain
YP_0377	PF07690	Major Facilitator Superfamily
YP_0378	PF02464	Competence-damaged protein
YP_0379	PF00154	recA bacterial DNA recombination protein
YP_0380	PF02631	RecX family
YP_0381	PF01411	tRNA synthetases class II (A)
YP_0381	PF02272	DHHA1 domain
YP_0381	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
YP_0382	PF02599	Global regulator protein family
YP_0383	PF13419	Haloacid dehalogenase-like hydrolase
YP_0385	PF04262	Glutamate-cysteine ligase
YP_0386	PF02664	S-Ribosylhomocysteinase (LuxS)
YP_0387	PF00571	CBS domain
YP_0387	PF01595	YP_0387
YP_0387	PF03471	Transporter associated domain
YP_0388	PF01578	YP_0388
YP_0389	PF00448	SRP54-type protein, GTPase domain
YP_0389	PF02881	SRP54-type protein, helical bundle domain
YP_0389	PF02978	Signal peptide binding domain
YP_0391	PF00886	Ribosomal protein S16
YP_0392	PF01782	RimM N-terminal domain
YP_0392	PF05239	PRC-barrel domain
YP_0393	PF01746	tRNA (Guanine-1)-methyltransferase
YP_0394	PF01245	Ribosomal protein L19
YP_0395	PF04338	Protein of unknown function, DUF481
YP_0397	PF00072	Response regulator receiver domain
YP_0397	PF04397	LytTr DNA-binding domain
YP_0398	PF00793	DAHP synthetase I family
YP_0399	PF01817	Chorismate mutase type II
YP_0399	PF02153	Prephenate dehydrogenase
YP_0400	PF00800	Prephenate dehydratase
YP_0400	PF01817	Chorismate mutase type II
YP_0401	PF01695	IstB-like ATP binding protein
YP_0402	PF00665	Integrase core domain
YP_0402	PF02796	Helix-turn-helix domain of resolvase
YP_0404	PF00474	Sodium:solute symporter family
YP_0405	PF04341	YP_0405
YP_0406	PF00501	AMP-binding enzyme
YP_0406	PF13193	AMP-binding enzyme C-terminal domain
YP_0406	PF16177	YP_0406
YP_0407	PF00375	Sodium:dicarboxylate symporter family
YP_0408	PF00072	Response regulator receiver domain
YP_0408	PF00196	Bacterial regulatory proteins, luxR family
YP_0409	PF00072	Response regulator receiver domain
YP_0409	PF00512	His Kinase A (phospho-acceptor) domain
YP_0409	PF01627	Hpt domain
YP_0409	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_0410	PF00263	YP_0410
YP_0410	PF03958	Bacterial type II/III secretion system short domain
YP_0411	PF16693	YP_0411
YP_0412	PF08988	Protein of unknown function (DUF1895)
YP_0413	PF12833	Helix-turn-helix domain
YP_0414	PF09392	Type III secretion needle MxiH like
YP_0415	PF06287	YP_0415
YP_0417	PF01514	Secretory protein of YscJ/FliF family
YP_0418	PF13327	YP_0418
YP_0420	PF00771	FHIPEP family
YP_0421	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YP_0421	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YP_0424	PF01052	Surface presentation of antigens (SPOA)
YP_0425	PF00813	YP_0425
YP_0426	PF01313	YP_0426
YP_0427	PF01311	YP_0427
YP_0428	PF01312	FlhB HrpN YscU SpaS Family
YP_0429	PF04143	YP_0429
YP_0430	PF01206	Sulfurtransferase TusA
YP_0431	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_0431	PF03466	LysR substrate binding domain
YP_0433	PF01053	Cys/Met metabolism PLP-dependent enzyme
YP_0434	PF00005	ABC transporter
YP_0435	PF01032	FecCD transport family
YP_0436	PF01497	Periplasmic binding protein
YP_0437	PF05171	Haemin-degrading HemS
YP_0438	PF00593	TonB dependent receptor
YP_0438	PF07715	TonB-dependent Receptor Plug Domain
YP_0439	PF10636	Hemin uptake protein hemP
YP_0440	PF13460	NADH(P)-binding
YP_0441	PF06228	Haem utilisation ChuX/HutX
YP_0443	PF01695	IstB-like ATP binding protein
YP_0444	PF00665	Integrase core domain
YP_0444	PF02796	Helix-turn-helix domain of resolvase
YP_0445	PF02219	Methylenetetrahydrofolate reductase
YP_0447	PF15617	YP_0447
YP_0448	PF11202	YP_0448
YP_0448	PF15608	YP_0448
YP_0450	PF12500	YP_0450
YP_0450	PF15609	YP_0450
YP_0451	PF15632	YP_0451
YP_0452	PF02342	TerD domain
YP_0453	PF02342	TerD domain
YP_0454	PF05099	Tellurite resistance protein TerB
YP_0455	PF03741	YP_0455
YP_0456	PF02342	TerD domain
YP_0457	PF02342	TerD domain
YP_0458	PF06551	YP_0458
YP_0459	PF00577	Outer membrane usher protein
YP_0459	PF13953	PapC C-terminal domain
YP_0459	PF13954	PapC N-terminal domain
YP_0460	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YP_0464	PF01565	FAD binding domain
YP_0464	PF08031	Berberine and berberine like
YP_0465	PF03797	Autotransporter beta-domain
YP_0466	PF04345	Chorismate lyase
YP_0467	PF01040	UbiA prenyltransferase family
YP_0468	PF01553	Acyltransferase
YP_0469	PF01219	Prokaryotic diacylglycerol kinase
YP_0470	PF00717	Peptidase S24-like
YP_0470	PF01726	LexA DNA binding domain
YP_0471	PF01475	Ferric uptake regulator family
YP_0472	PF01207	Dihydrouridine synthase (Dus)
YP_0473	PF09583	YP_0473
YP_0474	PF00107	Zinc-binding dehydrogenase
YP_0474	PF08240	Alcohol dehydrogenase GroES-like domain
YP_0475	PF00772	DnaB-like helicase N terminal domain
YP_0475	PF03796	DnaB-like helicase C terminal domain
YP_0476	PF00842	Alanine racemase, C-terminal domain
YP_0476	PF01168	Alanine racemase, N-terminal domain
YP_0477	PF00155	Aminotransferase class I and II
YP_0478	PF04237	YjbR
YP_0479	PF00005	ABC transporter
YP_0480	PF00436	Single-strand binding protein family
YP_0481	PF05336	Domain of unknown function (DUF718)
YP_0482	PF00465	Iron-containing alcohol dehydrogenase
YP_0483	PF00596	Class II Aldolase and Adducin N-terminal domain
YP_0484	PF06134	L-rhamnose isomerase (RhaA)
YP_0485	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YP_0485	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YP_0487	PF02311	AraC-like ligand binding domain
YP_0487	PF12833	Helix-turn-helix domain
YP_0488	PF02311	AraC-like ligand binding domain
YP_0488	PF12833	Helix-turn-helix domain
YP_0489	PF06379	YP_0489
YP_0493	PF03272	YP_0493
YP_0493	PF13402	Peptidase M60-like family
YP_0494	PF00440	Bacterial regulatory proteins, tetR family
YP_0496	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YP_0496	PF13247	4Fe-4S dicluster domain
YP_0496	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
YP_0497	PF12800	4Fe-4S binding domain
YP_0497	PF13187	4Fe-4S dicluster domain
YP_0498	PF00384	Molybdopterin oxidoreductase
YP_0498	PF01568	Molydopterin dinucleotide binding domain
YP_0498	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YP_0499	PF02683	YP_0499
YP_0499	PF11412	Disulphide bond corrector protein DsbC
YP_0499	PF13899	Thioredoxin-like
YP_0500	PF03091	CutA1 divalent ion tolerance protein
YP_0501	PF03605	YP_0501
YP_0502	PF00206	Lyase
YP_0502	PF10415	Fumarase C C-terminus
YP_0504	PF04186	YP_0504
YP_0505	PF00166	Chaperonin 10 Kd subunit
YP_0506	PF00118	TCP-1/cpn60 chaperonin family
YP_0508	PF13698	YP_0508
YP_0509	PF04055	Radical SAM superfamily
YP_0509	PF13353	4Fe-4S single cluster domain
YP_0510	PF01132	Elongation factor P (EF-P) OB domain
YP_0510	PF08207	Elongation factor P (EF-P) KOW-like domain
YP_0510	PF09285	Elongation factor P, C-terminal
YP_0511	PF00893	Small Multidrug Resistance protein
YP_0512	PF02313	Fumarate reductase subunit D
YP_0513	PF02300	Fumarate reductase subunit C
YP_0514	PF13085	2Fe-2S iron-sulfur cluster binding domain
YP_0514	PF13183	4Fe-4S dicluster domain
YP_0515	PF00890	FAD binding domain
YP_0515	PF02910	Fumarate reductase flavoprotein C-term
YP_0517	PF00152	tRNA synthetases class II (D, K and N)
YP_0518	PF00924	Mechanosensitive ion channel
YP_0518	PF12794	YP_0518
YP_0518	PF12795	YP_0518
YP_0519	PF02666	YP_0519
YP_0520	PF03193	Protein of unknown function, DUF258
YP_0521	PF00929	Exonuclease
YP_0523	PF08331	YP_0523
YP_0523	PF13484	YP_0523
YP_0524	PF01256	Carbohydrate kinase
YP_0524	PF03853	YjeF-related protein N-terminus
YP_0525	PF02367	Uncharacterised P-loop hydrolase UPF0079
YP_0526	PF01476	LysM domain
YP_0526	PF01520	N-acetylmuramoyl-L-alanine amidase
YP_0526	PF11741	AMIN domain
YP_0527	PF01119	DNA mismatch repair protein, C-terminal domain
YP_0527	PF08676	MutL C terminal dimerisation domain
YP_0527	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_0528	PF01715	IPP transferase
YP_0529	PF17209	YP_0529
YP_0530	PF01926	50S ribosome-binding GTPase
YP_0530	PF13167	YP_0530
YP_0530	PF16360	YP_0530
YP_0531	PF01145	SPFH domain / Band 7 family
YP_0531	PF12221	YP_0531
YP_0532	PF01145	SPFH domain / Band 7 family
YP_0533	PF09838	YP_0533
YP_0534	PF00709	Adenylosuccinate synthetase
YP_0535	PF02082	Transcriptional regulator
YP_0536	PF00575	S1 RNA binding domain
YP_0536	PF00773	RNB domain
YP_0536	PF08206	Ribonuclease B OB domain
YP_0536	PF08461	Ribonuclease R winged-helix domain
YP_0537	PF00588	SpoU rRNA Methylase family
YP_0537	PF08032	RNA 2'-O ribose methyltransferase substrate binding
YP_0538	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
YP_0538	PF02770	Acyl-CoA dehydrogenase, middle domain
YP_0539	PF07338	Protein of unknown function (DUF1471)
YP_0540	PF00326	Prolyl oligopeptidase family
YP_0542	PF01250	Ribosomal protein S6
YP_0543	PF00436	Single-strand binding protein family
YP_0544	PF01084	Ribosomal protein S18
YP_0545	PF01281	Ribosomal protein L9, N-terminal domain
YP_0545	PF03948	Ribosomal protein L9, C-terminal domain
YP_0546	PF00665	Integrase core domain
YP_0546	PF02796	Helix-turn-helix domain of resolvase
YP_0547	PF01695	IstB-like ATP binding protein
YP_0548	PF01797	Transposase IS200 like
YP_0549	PF12582	YP_0549
YP_0550	PF04225	Opacity-associated protein A LysM-like domain
YP_0550	PF08525	YP_0550
YP_0551	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YP_0551	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
YP_0552	PF01814	Hemerythrin HHE cation binding domain
YP_0552	PF04405	YP_0552
YP_0553	PF00149	Calcineurin-like phosphoesterase
YP_0553	PF02872	5'-nucleotidase, C-terminal domain
YP_0554	PF00459	Inositol monophosphatase family
YP_0555	PF09695	YP_0555
YP_0556	PF06526	Protein of unknown function (DUF1107)
YP_0557	PF00571	CBS domain
YP_0557	PF01595	YP_0557
YP_0557	PF03471	Transporter associated domain
YP_0558	PF01625	Peptide methionine sulfoxide reductase
YP_0559	PF01103	Surface antigen
YP_0559	PF07244	Surface antigen variable number repeat
YP_0559	PF17243	YP_0559
YP_0560	PF04357	YP_0560
YP_0561	PF06094	AIG2-like family
YP_0562	PF00719	Inorganic pyrophosphatase
YP_0563	PF00316	Fructose-1-6-bisphosphatase
YP_0564	PF01225	Mur ligase family, catalytic domain
YP_0564	PF02875	Mur ligase family, glutamate ligase domain
YP_0564	PF08245	Mur ligase middle domain
YP_0565	PF07338	Protein of unknown function (DUF1471)
YP_0566	PF01316	Arginine repressor, DNA binding domain
YP_0566	PF02863	Arginine repressor, C-terminal domain
YP_0567	PF00056	lactate/malate dehydrogenase, NAD binding domain
YP_0567	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
YP_0568	PF13693	Winged helix-turn-helix DNA-binding
YP_0569	PF02316	Mu DNA-binding domain
YP_0570	PF00348	Polyprenyl synthetase
YP_0571	PF00829	Ribosomal prokaryotic L21 protein
YP_0572	PF01016	Ribosomal L27 protein
YP_0573	PF00892	EamA-like transporter family
YP_0574	PF01018	GTP1/OBG
YP_0574	PF01926	50S ribosome-binding GTPase
YP_0575	PF00512	His Kinase A (phospho-acceptor) domain
YP_0575	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_0576	PF00072	Response regulator receiver domain
YP_0576	PF00486	Transcriptional regulatory protein, C terminal
YP_0577	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
YP_0578	PF01272	Transcription elongation factor, GreA/GreB, C-term
YP_0578	PF03449	Transcription elongation factor, N-terminal
YP_0579	PF01985	CRS1 / YhbY (CRM) domain
YP_0580	PF01728	FtsJ-like methyltransferase
YP_0581	PF00004	ATPase family associated with various cellular activities (AAA)
YP_0581	PF01434	Peptidase family M41
YP_0581	PF06480	FtsH Extracellular
YP_0582	PF00809	Pterin binding enzyme
YP_0583	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YP_0583	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_0583	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YP_0583	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YP_0584	PF03840	Preprotein translocase SecG subunit
YP_0585	PF02576	Uncharacterised BCR, YhbC family COG0779
YP_0585	PF17384	YP_0585
YP_0586	PF08529	NusA N-terminal domain
YP_0586	PF13184	NusA-like KH domain
YP_0586	PF14520	Helix-hairpin-helix domain
YP_0587	PF00009	Elongation factor Tu GTP binding domain
YP_0587	PF03144	Elongation factor Tu domain 2
YP_0587	PF04760	Translation initiation factor IF-2, N-terminal region
YP_0587	PF08364	YP_0587
YP_0587	PF11987	Translation-initiation factor 2
YP_0588	PF02033	Ribosome-binding factor A
YP_0589	PF01509	TruB family pseudouridylate synthase (N terminal domain)
YP_0589	PF09157	Pseudouridine synthase II TruB, C-terminal
YP_0589	PF16198	YP_0589
YP_0590	PF00312	Ribosomal protein S15
YP_0591	PF13518	Helix-turn-helix domain
YP_0592	PF00665	Integrase core domain
YP_0592	PF13276	YP_0592
YP_0593	PF00013	KH domain
YP_0593	PF00575	S1 RNA binding domain
YP_0593	PF01138	3' exoribonuclease family, domain 1
YP_0593	PF03725	3' exoribonuclease family, domain 2
YP_0593	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
YP_0594	PF07719	Tetratricopeptide repeat
YP_0594	PF13181	Tetratricopeptide repeat
YP_0595	PF00270	DEAD/DEAH box helicase
YP_0595	PF00271	Helicase conserved C-terminal domain
YP_0595	PF03880	DbpA RNA binding domain
YP_0595	PF12343	YP_0595
YP_0597	PF05973	YP_0597
YP_0598	PF01381	Helix-turn-helix
YP_0599	PF00296	Luciferase-like monooxygenase
YP_0600	PF16576	YP_0600
YP_0601	PF00873	AcrB/AcrD/AcrF family
YP_0602	PF02321	Outer membrane efflux protein
YP_0603	PF01136	YP_0603
YP_0604	PF01136	YP_0604
YP_0606	PF02036	SCP-2 sterol transfer family
YP_0607	PF00583	Acetyltransferase (GNAT) family
YP_0608	PF01541	GIY-YIG catalytic domain
YP_0609	PF05426	Alginate lyase
YP_0609	PF07940	Heparinase II/III-like protein
YP_0610	PF05426	Alginate lyase
YP_0611	PF01547	Bacterial extracellular solute-binding protein
YP_0612	PF00528	Binding-protein-dependent transport system inner membrane component
YP_0613	PF00528	Binding-protein-dependent transport system inner membrane component
YP_0615	PF05426	Alginate lyase
YP_0618	PF12706	Beta-lactamase superfamily domain
YP_0619	PF13238	AAA domain
YP_0620	PF07969	Amidohydrolase family
YP_0621	PF00005	ABC transporter
YP_0623	PF00005	ABC transporter
YP_0624	PF06007	YP_0624
YP_0625	PF05861	YP_0625
YP_0626	PF05845	Bacterial phosphonate metabolism protein (PhnH)
YP_0627	PF06754	YP_0627
YP_0628	PF00392	Bacterial regulatory proteins, gntR family
YP_0628	PF07702	UTRA domain
YP_0630	PF13353	4Fe-4S single cluster domain
YP_0631	PF03477	ATP cone domain
YP_0631	PF13597	Anaerobic ribonucleoside-triphosphate reductase
YP_0632	PF00005	ABC transporter
YP_0633	PF00005	ABC transporter
YP_0634	PF00528	Binding-protein-dependent transport system inner membrane component
YP_0634	PF12911	YP_0634
YP_0635	PF00528	Binding-protein-dependent transport system inner membrane component
YP_0637	PF04074	Domain of unknown function (DUF386)
YP_0638	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
YP_0638	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
YP_0639	PF06877	Regulator of ribonuclease activity B
YP_0640	PF00583	Acetyltransferase (GNAT) family
YP_0641	PF00133	tRNA synthetases class I (I, L, M and V)
YP_0641	PF08264	Anticodon-binding domain of tRNA
YP_0641	PF10458	Valyl tRNA synthetase tRNA binding arm
YP_0642	PF04364	DNA polymerase III chi subunit, HolC
YP_0643	PF00883	Cytosol aminopeptidase family, catalytic domain
YP_0643	PF02789	Cytosol aminopeptidase family, N-terminal domain
YP_0644	PF03739	YP_0644
YP_0645	PF03739	YP_0645
YP_0646	PF00589	Phage integrase family
YP_0646	PF13356	Domain of unknown function (DUF4102)
YP_0647	PF03235	YP_0647
YP_0647	PF07510	YP_0647
YP_0649	PF01695	IstB-like ATP binding protein
YP_0650	PF00665	Integrase core domain
YP_0650	PF02796	Helix-turn-helix domain of resolvase
YP_0651	PF01797	Transposase IS200 like
YP_0652	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
YP_0653	PF13525	Outer membrane lipoprotein
YP_0654	PF00849	RNA pseudouridylate synthase
YP_0654	PF01479	S4 domain
YP_0655	PF02578	Multi-copper polyphenol oxidoreductase laccase
YP_0656	PF00004	ATPase family associated with various cellular activities (AAA)
YP_0656	PF02861	Clp amino terminal domain
YP_0656	PF07724	AAA domain (Cdc48 subfamily)
YP_0656	PF10431	C-terminal, D2-small domain, of ClpB protein
YP_0657	PF10043	YP_0657
YP_0658	PF13091	PLD-like domain
YP_0659	PF00583	Acetyltransferase (GNAT) family
YP_0659	PF13380	CoA binding domain
YP_0659	PF13549	ATP-grasp domain
YP_0659	PF13607	Succinyl-CoA ligase like flavodoxin domain
YP_0660	PF03942	YP_0660
YP_0661	PF00085	Thioredoxin
YP_0662	PF00588	SpoU rRNA Methylase family
YP_0662	PF08032	RNA 2'-O ribose methyltransferase substrate binding
YP_0663	PF07690	Major Facilitator Superfamily
YP_0664	PF00529	HlyD family secretion protein
YP_0664	PF16576	YP_0664
YP_0666	PF01047	MarR family
YP_0667	PF05437	YP_0667
YP_0668	PF03591	YP_0668
YP_0669	PF07690	Major Facilitator Superfamily
YP_0670	PF11533	Protein of unknown function (DUF3225)
YP_0671	PF01425	Amidase
YP_0672	PF13318	YP_0672
YP_0674	PF01380	SIS domain
YP_0674	PF01418	Helix-turn-helix domain, rpiR family
YP_0676	PF00497	Bacterial extracellular solute-binding proteins, family 3
YP_0677	PF00528	Binding-protein-dependent transport system inner membrane component
YP_0678	PF00528	Binding-protein-dependent transport system inner membrane component
YP_0679	PF00005	ABC transporter
YP_0681	PF01695	IstB-like ATP binding protein
YP_0682	PF00665	Integrase core domain
YP_0682	PF02796	Helix-turn-helix domain of resolvase
YP_0683	PF01546	Peptidase family M20/M25/M40
YP_0684	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YP_0684	PF08479	POTRA domain, ShlB-type
YP_0685	PF05860	haemagglutination activity domain
YP_0685	PF13018	YP_0685
YP_0687	PF03333	Adhesin biosynthesis transcription regulatory protein
YP_0688	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
YP_0688	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
YP_0688	PF09317	YP_0688
YP_0689	PF13580	SIS domain
YP_0690	PF13230	Glutamine amidotransferases class-II
YP_0691	PF03734	L,D-transpeptidase catalytic domain
YP_0693	PF05896	YP_0693
YP_0693	PF11973	YP_0693
YP_0694	PF03116	YP_0694
YP_0695	PF04205	FMN-binding domain
YP_0696	PF02508	YP_0696
YP_0697	PF02508	YP_0697
YP_0698	PF00111	2Fe-2S iron-sulfur cluster binding domain
YP_0698	PF00175	Oxidoreductase NAD-binding domain
YP_0698	PF00970	Oxidoreductase FAD-binding domain
YP_0699	PF02424	ApbE family
YP_0700	PF04400	YP_0700
YP_0701	PF03009	Glycerophosphoryl diester phosphodiesterase family
YP_0702	PF00817	impB/mucB/samB family
YP_0702	PF11798	IMS family HHH motif
YP_0702	PF11799	impB/mucB/samB family C-terminal domain
YP_0703	PF01546	Peptidase family M20/M25/M40
YP_0703	PF07687	Peptidase dimerisation domain
YP_0705	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_0706	PF03067	Chitin binding domain
YP_0707	PF16083	YP_0707
YP_0708	PF00156	Phosphoribosyl transferase domain
YP_0709	PF06500	Alpha/beta hydrolase of unknown function (DUF1100)
YP_0710	PF07417	Transcriptional regulator Crl
YP_0711	PF00696	Amino acid kinase family
YP_0711	PF01472	PUA domain
YP_0712	PF00171	Aldehyde dehydrogenase family
YP_0714	PF07238	PilZ domain
YP_0714	PF07317	Flagellar regulator YcgR
YP_0717	PF08241	Methyltransferase domain
YP_0719	PF00398	Ribosomal RNA adenine dimethylase
YP_0720	PF01202	Shikimate kinase
YP_0722	PF06865	Protein of unknown function (DUF1255)
YP_0723	PF04381	Putative exonuclease, RdgC
YP_0724	PF00480	ROK family
YP_0725	PF13476	AAA domain
YP_0725	PF13558	Putative exonuclease SbcCD, C subunit
YP_0726	PF00149	Calcineurin-like phosphoesterase
YP_0726	PF12320	Type 5 capsule protein repressor C-terminal domain
YP_0727	PF00072	Response regulator receiver domain
YP_0727	PF00486	Transcriptional regulatory protein, C terminal
YP_0728	PF00512	His Kinase A (phospho-acceptor) domain
YP_0728	PF00989	PAS fold
YP_0728	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_0728	PF11808	YP_0728
YP_0729	PF12849	PBP superfamily domain
YP_0730	PF05525	YP_0730
YP_0731	PF00324	Amino acid permease
YP_0732	PF00128	Alpha amylase, catalytic domain
YP_0732	PF02903	Alpha amylase, N-terminal ig-like domain
YP_0733	PF00106	short chain dehydrogenase
YP_0737	PF00578	AhpC/TSA family
YP_0737	PF10417	C-terminal domain of 1-Cys peroxiredoxin
YP_0738	PF04336	YP_0738
YP_0739	PF02547	Queuosine biosynthesis protein
YP_0740	PF01702	Queuine tRNA-ribosyltransferase
YP_0741	PF02699	Preprotein translocase subunit
YP_0742	PF02355	Protein export membrane protein
YP_0742	PF07549	SecD/SecF GG Motif
YP_0742	PF13721	SecD export protein N-terminal TM region
YP_0743	PF02355	Protein export membrane protein
YP_0743	PF07549	SecD/SecF GG Motif
YP_0744	PF01797	Transposase IS200 like
YP_0747	PF03477	ATP cone domain
YP_0748	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
YP_0748	PF01872	RibD C-terminal domain
YP_0749	PF00885	6,7-dimethyl-8-ribityllumazine synthase
YP_0750	PF01029	NusB family
YP_0751	PF00586	AIR synthase related protein, N-terminal domain
YP_0751	PF02769	AIR synthase related protein, C-terminal domain
YP_0752	PF04608	Phosphatidylglycerophosphatase A
YP_0753	PF01797	Transposase IS200 like
YP_0754	PF02779	Transketolase, pyrimidine binding domain
YP_0754	PF02780	Transketolase, C-terminal domain
YP_0754	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
YP_0755	PF00348	Polyprenyl synthetase
YP_0756	PF02609	Exonuclease VII small subunit
YP_0758	PF02568	Thiamine biosynthesis protein (ThiI)
YP_0758	PF02926	THUMP domain
YP_0759	PF01965	DJ-1/PfpI family
YP_0760	PF02558	Ketopantoate reductase PanE/ApbA
YP_0760	PF08546	Ketopantoate reductase PanE/ApbA C terminal
YP_0761	PF04461	Protein of unknown function (DUF520)
YP_0762	PF07690	Major Facilitator Superfamily
YP_0763	PF01040	UbiA prenyltransferase family
YP_0764	PF03626	YP_0764
YP_0765	PF00510	Cytochrome c oxidase subunit III
YP_0766	PF00115	Cytochrome C and Quinol oxidase polypeptide I
YP_0767	PF06481	COX Aromatic Rich Motif
YP_0768	PF03502	Nucleoside-specific channel-forming protein, Tsx
YP_0769	PF07690	Major Facilitator Superfamily
YP_0770	PF03923	YP_0770
YP_0770	PF08139	YP_0770
YP_0771	PF01722	BolA-like protein
YP_0773	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YP_0773	PF05697	Bacterial trigger factor protein (TF)
YP_0773	PF05698	Bacterial trigger factor protein (TF) C-terminus
YP_0774	PF00574	Clp protease
YP_0775	PF06689	ClpX C4-type zinc finger
YP_0775	PF07724	AAA domain (Cdc48 subfamily)
YP_0775	PF10431	C-terminal, D2-small domain, of ClpB protein
YP_0776	PF00004	ATPase family associated with various cellular activities (AAA)
YP_0776	PF02190	ATP-dependent protease La (LON) domain
YP_0776	PF05362	Lon protease (S16) C-terminal proteolytic domain
YP_0777	PF00216	Bacterial DNA-binding protein
YP_0778	PF13145	PPIC-type PPIASE domain
YP_0778	PF13624	SurA N-terminal domain
YP_0779	PF12836	Helix-hairpin-helix motif
YP_0780	PF13279	Thioesterase-like superfamily
YP_0781	PF06508	Queuosine biosynthesis protein QueC
YP_0782	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YP_0782	PF12793	YP_0782
YP_0783	PF08282	haloacid dehalogenase-like hydrolase
YP_0784	PF00291	Pyridoxal-phosphate dependent enzyme
YP_0785	PF01037	AsnC family
YP_0785	PF13412	Winged helix-turn-helix DNA-binding
YP_0786	PF00005	ABC transporter
YP_0786	PF00664	ABC transporter transmembrane region
YP_0787	PF00005	ABC transporter
YP_0787	PF00664	ABC transporter transmembrane region
YP_0788	PF00543	Nitrogen regulatory protein P-II
YP_0789	PF00909	Ammonium Transporter Family
YP_0790	PF13622	Thioesterase-like superfamily
YP_0791	PF09619	Type III secretion system lipoprotein chaperone (YscW)
YP_0792	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
YP_0793	PF05321	Haemolysin expression modulating protein
YP_0794	PF10757	YP_0794
YP_0796	PF00444	Ribosomal protein L36
YP_0797	PF01197	Ribosomal protein L31
YP_0798	PF00873	AcrB/AcrD/AcrF family
YP_0799	PF00529	HlyD family secretion protein
YP_0799	PF16576	YP_0799
YP_0800	PF00440	Bacterial regulatory proteins, tetR family
YP_0800	PF08361	MAATS-type transcriptional repressor, C-terminal region
YP_0801	PF02635	DsrE/DsrF-like family
YP_0802	PF00924	Mechanosensitive ion channel
YP_0802	PF12794	YP_0802
YP_0802	PF12795	YP_0802
YP_0803	PF10689	YP_0803
YP_0804	PF07445	Primosomal replication protein priB and priC
YP_0805	PF04304	YP_0805
YP_0806	PF00156	Phosphoribosyl transferase domain
YP_0807	PF12168	YP_0807
YP_0807	PF12169	DNA polymerase III subunits gamma and tau domain III
YP_0807	PF12170	DNA polymerase III tau subunit V interacting with alpha
YP_0807	PF13177	DNA polymerase III, delta subunit
YP_0808	PF02575	YbaB/EbfC DNA-binding family
YP_0809	PF02132	RecR protein
YP_0809	PF13662	Toprim domain
YP_0811	PF00183	Hsp90 protein
YP_0811	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_0812	PF00406	Adenylate kinase
YP_0812	PF05191	Adenylate kinase, active site lid
YP_0813	PF00762	Ferrochelatase
YP_0814	PF00111	2Fe-2S iron-sulfur cluster binding domain
YP_0814	PF00175	Oxidoreductase NAD-binding domain
YP_0814	PF00970	Oxidoreductase FAD-binding domain
YP_0815	PF00483	Nucleotidyl transferase
YP_0816	PF16363	YP_0816
YP_0817	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
YP_0818	PF01370	NAD dependent epimerase/dehydratase family
YP_0819	PF13450	NAD(P)-binding Rossmann-like domain
YP_0822	PF13692	Glycosyl transferases group 1
YP_0824	PF00534	Glycosyl transferases group 1
YP_0824	PF13439	Glycosyltransferase Family 4
YP_0826	PF01370	NAD dependent epimerase/dehydratase family
YP_0828	PF00535	Glycosyl transferase family 2
YP_0829	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YP_0829	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_0829	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YP_0829	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YP_0830	PF02706	Chain length determinant protein
YP_0831	PF00294	pfkB family carbohydrate kinase
YP_0832	PF00999	Sodium/hydrogen exchanger family
YP_0832	PF02254	TrkA-N domain
YP_0833	PF07690	Major Facilitator Superfamily
YP_0836	PF04073	Aminoacyl-tRNA editing domain
YP_0837	PF01963	YP_0837
YP_0838	PF00122	E1-E2 ATPase
YP_0838	PF00403	Heavy-metal-associated domain
YP_0838	PF00702	haloacid dehalogenase-like hydrolase
YP_0839	PF13411	MerR HTH family regulatory protein
YP_0840	PF01957	NfeD-like C-terminal, partner-binding
YP_0841	PF01145	SPFH domain / Band 7 family
YP_0842	PF00085	Thioredoxin
YP_0842	PF14559	Tetratricopeptide repeat
YP_0842	PF14561	Tetratricopeptide repeat
YP_0843	PF00106	short chain dehydrogenase
YP_0844	PF13472	GDSL-like Lipase/Acylhydrolase family
YP_0845	PF00005	ABC transporter
YP_0846	PF02687	YP_0846
YP_0847	PF02222	ATP-grasp domain
YP_0848	PF00731	AIR carboxylase
YP_0850	PF00149	Calcineurin-like phosphoesterase
YP_0851	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YP_0852	PF01406	tRNA synthetases class I (C) catalytic domain
YP_0852	PF09190	DALR domain
YP_0853	PF01797	Transposase IS200 like
YP_0854	PF13275	S4 domain
YP_0855	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_0855	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
YP_0857	PF05930	Prophage CP4-57 regulatory protein (AlpA)
YP_0861	PF00589	Phage integrase family
YP_0864	PF01066	CDP-alcohol phosphatidyltransferase
YP_0865	PF01148	Cytidylyltransferase family
YP_0866	PF01553	Acyltransferase
YP_0867	PF12146	Putative lysophospholipase
YP_0867	PF12147	YP_0867
YP_0868	PF00782	Dual specificity phosphatase, catalytic domain
YP_0868	PF14378	YP_0868
YP_0871	PF01695	IstB-like ATP binding protein
YP_0872	PF00665	Integrase core domain
YP_0872	PF02796	Helix-turn-helix domain of resolvase
YP_0875	PF07977	FabA-like domain
YP_0876	PF05362	Lon protease (S16) C-terminal proteolytic domain
YP_0876	PF13654	AAA domain
YP_0877	PF06303	Organiser of macrodomain of Terminus of chromosome
YP_0877	PF17414	YP_0877
YP_0878	PF01797	Transposase IS200 like
YP_0879	PF04245	YP_0879
YP_0880	PF07208	Protein of unknown function (DUF1414)
YP_0881	PF00884	Sulfatase
YP_0881	PF11893	YP_0881
YP_0883	PF12639	DNase/tRNase domain of colicin-like bacteriocin
YP_0886	PF00232	Glycosyl hydrolase family 1
YP_0887	PF01380	SIS domain
YP_0887	PF01418	Helix-turn-helix domain, rpiR family
YP_0888	PF07484	Phage Tail Collar Domain
YP_0889	PF10076	YP_0889
YP_0890	PF10076	YP_0890
YP_0891	PF04865	YP_0891
YP_0892	PF07409	YP_0892
YP_0893	PF06890	Bacteriophage Mu Gp45 protein
YP_0894	PF05954	Phage late control gene D protein (GPD)
YP_0895	PF07157	YP_0895
YP_0897	PF10109	YP_0897
YP_0898	PF10618	YP_0898
YP_0899	PF04984	Phage tail sheath protein
YP_0899	PF17482	YP_0899
YP_0900	PF10948	YP_0900
YP_0903	PF01261	Xylose isomerase-like TIM barrel
YP_0904	PF00455	YP_0904
YP_0904	PF08220	DeoR-like helix-turn-helix domain
YP_0905	PF00596	Class II Aldolase and Adducin N-terminal domain
YP_0906	PF07005	Protein of unknown function, DUF1537
YP_0906	PF17042	YP_0906
YP_0907	PF06530	YP_0907
YP_0908	PF00717	Peptidase S24-like
YP_0908	PF01381	Helix-turn-helix
YP_0909	PF06183	DinI-like family
YP_0910	PF01278	Omptin family
YP_0911	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YP_0911	PF00672	HAMP domain
YP_0911	PF02743	Cache domain
YP_0912	PF12706	Beta-lactamase superfamily domain
YP_0913	PF13347	MFS/sugar transport protein
YP_0915	PF00144	Beta-lactamase
YP_0916	PF00267	Gram-negative porin
YP_0917	PF07690	Major Facilitator Superfamily
YP_0919	PF00072	Response regulator receiver domain
YP_0919	PF00196	Bacterial regulatory proteins, luxR family
YP_0920	PF00072	Response regulator receiver domain
YP_0920	PF00512	His Kinase A (phospho-acceptor) domain
YP_0920	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_0920	PF09456	RcsC Alpha-Beta-Loop (ABL)
YP_0921	PF00521	DNA gyrase/topoisomerase IV, subunit A
YP_0921	PF03989	DNA gyrase C-terminal domain, beta-propeller
YP_0922	PF13489	Methyltransferase domain
YP_0923	PF00317	Ribonucleotide reductase, all-alpha domain
YP_0923	PF02867	Ribonucleotide reductase, barrel domain
YP_0923	PF03477	ATP cone domain
YP_0924	PF00268	Ribonucleotide reductase, small chain
YP_0925	PF00111	2Fe-2S iron-sulfur cluster binding domain
YP_0926	PF03974	Ecotin
YP_0927	PF00994	Probable molybdopterin binding domain
YP_0929	PF03222	Tryptophan/tyrosine permease family
YP_0930	PF07437	YP_0930
YP_0931	PF00199	Catalase
YP_0931	PF06628	Catalase-related immune-responsive
YP_0932	PF06733	DEAD_2
YP_0932	PF13307	Helicase C-terminal domain
YP_0933	PF00267	Gram-negative porin
YP_0934	PF00892	EamA-like transporter family
YP_0936	PF01276	Orn/Lys/Arg decarboxylase, major domain
YP_0936	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
YP_0936	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
YP_0937	PF13520	Amino acid permease
YP_0938	PF00528	Binding-protein-dependent transport system inner membrane component
YP_0939	PF00005	ABC transporter
YP_0940	PF00528	Binding-protein-dependent transport system inner membrane component
YP_0942	PF00581	Rhodanese-like domain
YP_0943	PF00282	Pyridoxal-dependent decarboxylase conserved domain
YP_0944	PF13640	2OG-Fe(II) oxygenase superfamily
YP_0945	PF00005	ABC transporter
YP_0946	PF00005	ABC transporter
YP_0946	PF12399	Branched-chain amino acid ATP-binding cassette transporter
YP_0947	PF02653	YP_0947
YP_0948	PF02653	YP_0948
YP_0948	PF13646	HEAT repeats
YP_0949	PF13433	Periplasmic binding protein domain
YP_0950	PF07308	YP_0950
YP_0951	PF00528	Binding-protein-dependent transport system inner membrane component
YP_0952	PF00528	Binding-protein-dependent transport system inner membrane component
YP_0953	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
YP_0954	PF00005	ABC transporter
YP_0955	PF04226	YP_0955
YP_0956	PF05076	Suppressor of fused protein (SUFU)
YP_0958	PF01844	HNH endonuclease
YP_0959	PF01928	CYTH domain
YP_0960	PF01565	FAD binding domain
YP_0960	PF09330	D-lactate dehydrogenase, membrane binding
YP_0961	PF00768	D-alanyl-D-alanine carboxypeptidase
YP_0963	PF01207	Dihydrouridine synthase (Dus)
YP_0965	PF01797	Transposase IS200 like
YP_0968	PF00872	YP_0968
YP_0972	PF13358	DDE superfamily endonuclease
YP_0973	PF00270	DEAD/DEAH box helicase
YP_0973	PF00271	Helicase conserved C-terminal domain
YP_0974	PF00440	Bacterial regulatory proteins, tetR family
YP_0974	PF09209	Domain of unknown function (DUF1956)
YP_0975	PF16576	YP_0975
YP_0976	PF00005	ABC transporter
YP_0977	PF12698	ABC-2 family transporter protein
YP_0978	PF12698	ABC-2 family transporter protein
YP_0979	PF07110	EthD domain
YP_0981	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_0981	PF03466	LysR substrate binding domain
YP_0982	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
YP_0983	PF00072	Response regulator receiver domain
YP_0983	PF00158	Sigma-54 interaction domain
YP_0983	PF02954	Bacterial regulatory protein, Fis family
YP_0984	PF00512	His Kinase A (phospho-acceptor) domain
YP_0984	PF00989	PAS fold
YP_0984	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_0984	PF17203	YP_0984
YP_0985	PF13801	Heavy-metal resistance
YP_0987	PF01797	Transposase IS200 like
YP_0988	PF01048	Phosphorylase superfamily
YP_0989	PF00892	EamA-like transporter family
YP_0990	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_0990	PF03466	LysR substrate binding domain
YP_0991	PF02028	BCCT family transporter
YP_0992	PF00440	Bacterial regulatory proteins, tetR family
YP_0992	PF13977	Bacterial transcriptional repressor
YP_0993	PF00171	Aldehyde dehydrogenase family
YP_0994	PF00732	GMC oxidoreductase
YP_0994	PF05199	GMC oxidoreductase
YP_0995	PF01797	Transposase IS200 like
YP_0996	PF01027	Inhibitor of apoptosis-promoting Bax1
YP_0997	PF02391	MoaE protein
YP_0998	PF02597	ThiS family
YP_0999	PF01967	MoaC family
YP_1000	PF04055	Radical SAM superfamily
YP_1000	PF06463	Molybdenum Cofactor Synthesis C
YP_1000	PF13353	4Fe-4S single cluster domain
YP_1001	PF01933	Uncharacterised protein family UPF0052
YP_1002	PF09905	Uncharacterized conserved protein (DUF2132)
YP_1003	PF00271	Helicase conserved C-terminal domain
YP_1003	PF02151	UvrB/uvrC motif
YP_1003	PF04851	Type III restriction enzyme, res subunit
YP_1003	PF12344	Ultra-violet resistance protein B
YP_1005	PF00005	ABC transporter
YP_1006	PF13500	AAA domain
YP_1007	PF08241	Methyltransferase domain
YP_1008	PF00155	Aminotransferase class I and II
YP_1009	PF04055	Radical SAM superfamily
YP_1009	PF06968	Biotin and Thiamin Synthesis associated domain
YP_1010	PF00202	Aminotransferase class-III
YP_1011	PF10282	Lactonase, 7-bladed beta-propeller
YP_1012	PF08282	haloacid dehalogenase-like hydrolase
YP_1013	PF00005	ABC transporter
YP_1013	PF03459	TOBE domain
YP_1014	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1015	PF13531	Bacterial extracellular solute-binding protein
YP_1016	PF10766	Protein of unknown function (DUF2592)
YP_1017	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_1017	PF03459	TOBE domain
YP_1018	PF00005	ABC transporter
YP_1019	PF02517	CAAX protease self-immunity
YP_1020	PF16363	YP_1020
YP_1021	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
YP_1021	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
YP_1022	PF00288	GHMP kinases N terminal domain
YP_1022	PF08544	GHMP kinases C terminal
YP_1022	PF10509	Galactokinase galactose-binding signature
YP_1024	PF07769	YP_1024
YP_1025	PF00300	Histidine phosphatase superfamily (branch 1)
YP_1026	PF00793	DAHP synthetase I family
YP_1027	PF01545	Cation efflux family
YP_1028	PF04973	YP_1028
YP_1029	PF02445	Quinolinate synthetase A protein
YP_1030	PF13174	Tetratricopeptide repeat
YP_1030	PF13432	Tetratricopeptide repeat
YP_1030	PF16331	YP_1030
YP_1031	PF00691	OmpA family
YP_1032	PF04052	TolB amino-terminal domain
YP_1032	PF07676	WD40-like Beta Propeller Repeat
YP_1033	PF06519	TolA C-terminal
YP_1034	PF02472	Biopolymer transport protein ExbD/TolR
YP_1035	PF01618	YP_1035
YP_1036	PF03061	Thioesterase superfamily
YP_1037	PF09600	YP_1037
YP_1038	PF02322	YP_1038
YP_1039	PF01654	YP_1039
YP_1040	PF00549	CoA-ligase
YP_1040	PF02629	CoA binding domain
YP_1041	PF00549	CoA-ligase
YP_1041	PF08442	ATP-grasp domain
YP_1042	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
YP_1042	PF00364	Biotin-requiring enzyme
YP_1042	PF02817	e3 binding domain
YP_1043	PF00676	Dehydrogenase E1 component
YP_1043	PF02779	Transketolase, pyrimidine binding domain
YP_1043	PF16078	YP_1043
YP_1043	PF16870	YP_1043
YP_1044	PF13085	2Fe-2S iron-sulfur cluster binding domain
YP_1044	PF13534	4Fe-4S dicluster domain
YP_1045	PF00890	FAD binding domain
YP_1045	PF02910	Fumarate reductase flavoprotein C-term
YP_1047	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
YP_1048	PF00285	Citrate synthase
YP_1049	PF01025	GrpE
YP_1050	PF01513	ATP-NAD kinase
YP_1051	PF02463	RecF/RecN/SMC N terminal domain
YP_1052	PF04355	SmpA / OmlA family
YP_1053	PF03658	RnfH family Ubiquitin
YP_1054	PF03364	Polyketide cyclase / dehydrase and lipid transport
YP_1055	PF01668	SmpB protein
YP_1056	PF01797	Transposase IS200 like
YP_1057	PF00589	Phage integrase family
YP_1057	PF13356	Domain of unknown function (DUF4102)
YP_1058	PF14130	YP_1058
YP_1063	PF12834	YP_1063
YP_1063	PF12835	Integrase
YP_1064	PF05930	Prophage CP4-57 regulatory protein (AlpA)
YP_1065	PF10554	YP_1065
YP_1066	PF08273	Zinc-binding domain of primase-helicase
YP_1066	PF13362	Toprim domain
YP_1067	PF13481	AAA domain
YP_1070	PF05973	YP_1070
YP_1072	PF00665	Integrase core domain
YP_1072	PF02796	Helix-turn-helix domain of resolvase
YP_1073	PF01695	IstB-like ATP binding protein
YP_1074	PF01527	Transposase
YP_1077	PF12697	Alpha/beta hydrolase family
YP_1078	PF01402	Ribbon-helix-helix protein, copG family
YP_1080	PF00258	Flavodoxin
YP_1081	PF01475	Ferric uptake regulator family
YP_1083	PF03573	outer membrane porin, OprD family
YP_1084	PF00749	tRNA synthetases class I (E and Q), catalytic domain
YP_1084	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
YP_1085	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
YP_1085	PF00367	phosphotransferase system, EIIB
YP_1085	PF02378	Phosphotransferase system, EIIC
YP_1086	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
YP_1087	PF01979	Amidohydrolase family
YP_1088	PF00480	ROK family
YP_1088	PF01047	MarR family
YP_1090	PF00733	Asparagine synthase
YP_1090	PF13537	Glutamine amidotransferase domain
YP_1092	PF01494	FAD binding domain
YP_1093	PF00919	Uncharacterized protein family UPF0004
YP_1093	PF01938	TRAM domain
YP_1093	PF04055	Radical SAM superfamily
YP_1094	PF02562	PhoH-like protein
YP_1095	PF02130	Uncharacterized protein family UPF0054
YP_1096	PF00571	CBS domain
YP_1096	PF03471	Transporter associated domain
YP_1097	PF00795	Carbon-nitrogen hydrolase
YP_1098	PF00497	Bacterial extracellular solute-binding proteins, family 3
YP_1099	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1100	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1101	PF00005	ABC transporter
YP_1102	PF07295	YP_1102
YP_1103	PF00133	tRNA synthetases class I (I, L, M and V)
YP_1103	PF08264	Anticodon-binding domain of tRNA
YP_1103	PF13603	Leucyl-tRNA synthetase, Domain 2
YP_1104	PF04390	Lipopolysaccharide-assembly
YP_1105	PF06144	DNA polymerase III, delta subunit
YP_1105	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
YP_1106	PF01467	Cytidylyltransferase
YP_1107	PF02410	Oligomerisation domain
YP_1108	PF02590	Predicted SPOUT methyltransferase
YP_1109	PF00905	Penicillin binding protein transpeptidase domain
YP_1109	PF03717	Penicillin-binding Protein dimerisation domain
YP_1110	PF01098	YP_1110
YP_1111	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
YP_1111	PF05036	Sporulation related domain
YP_1112	PF00768	D-alanyl-D-alanine carboxypeptidase
YP_1112	PF07943	Penicillin-binding protein 5, C-terminal domain
YP_1113	PF04359	Protein of unknown function (DUF493)
YP_1114	PF03099	Biotin/lipoate A/B protein ligase family
YP_1115	PF04055	Radical SAM superfamily
YP_1115	PF16881	YP_1115
YP_1117	PF02416	mttA/Hcf106 family
YP_1118	PF02537	YP_1118
YP_1120	PF00313	'Cold-shock' DNA-binding domain
YP_1121	PF00313	'Cold-shock' DNA-binding domain
YP_1122	PF00196	Bacterial regulatory proteins, luxR family
YP_1125	PF08971	Glycogen synthesis protein
YP_1126	PF03992	Antibiotic biosynthesis monooxygenase
YP_1127	PF00005	ABC transporter
YP_1127	PF00664	ABC transporter transmembrane region
YP_1128	PF04962	KduI/IolB family
YP_1129	PF01261	Xylose isomerase-like TIM barrel
YP_1130	PF00294	pfkB family carbohydrate kinase
YP_1130	PF09863	Uncharacterized protein conserved in bacteria (DUF2090)
YP_1131	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YP_1131	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
YP_1132	PF02653	YP_1132
YP_1133	PF00005	ABC transporter
YP_1134	PF13407	Periplasmic binding protein domain
YP_1136	PF00205	Thiamine pyrophosphate enzyme, central domain
YP_1136	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_1136	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YP_1137	PF00171	Aldehyde dehydrogenase family
YP_1138	PF01380	SIS domain
YP_1138	PF01418	Helix-turn-helix domain, rpiR family
YP_1140	PF07274	YP_1140
YP_1141	PF00207	Alpha-2-macroglobulin family
YP_1141	PF01835	MG2 domain
YP_1141	PF07703	Alpha-2-macroglobulin family N-terminal region
YP_1141	PF11974	Alpha-2-macroglobulin MG1 domain
YP_1142	PF00905	Penicillin binding protein transpeptidase domain
YP_1142	PF00912	Transglycosylase
YP_1142	PF06832	YP_1142
YP_1143	PF13693	Winged helix-turn-helix DNA-binding
YP_1147	PF06836	YP_1147
YP_1149	PF06836	YP_1149
YP_1150	PF05638	Protein of unknown function (DUF796)
YP_1153	PF03212	Pertactin
YP_1153	PF03797	Autotransporter beta-domain
YP_1154	PF11459	YP_1154
YP_1154	PF17194	YP_1154
YP_1156	PF00872	YP_1156
YP_1158	PF09925	YP_1158
YP_1158	PF14351	YP_1158
YP_1159	PF14345	YP_1159
YP_1160	PF00933	Glycosyl hydrolase family 3 N terminal domain
YP_1160	PF01915	Glycosyl hydrolase family 3 C-terminal domain
YP_1160	PF14310	Fibronectin type III-like domain
YP_1162	PF00248	Aldo/keto reductase family
YP_1163	PF00248	Aldo/keto reductase family
YP_1164	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_1164	PF03466	LysR substrate binding domain
YP_1165	PF00665	Integrase core domain
YP_1165	PF02796	Helix-turn-helix domain of resolvase
YP_1166	PF01695	IstB-like ATP binding protein
YP_1168	PF01797	Transposase IS200 like
YP_1171	PF03886	Protein of unknown function (DUF330)
YP_1172	PF02470	YP_1172
YP_1173	PF04403	YP_1173
YP_1174	PF00005	ABC transporter
YP_1174	PF12848	ABC transporter
YP_1174	PF16326	YP_1174
YP_1175	PF01170	Putative RNA methylase family UPF0020
YP_1175	PF02926	THUMP domain
YP_1175	PF10672	S-adenosylmethionine-dependent methyltransferase
YP_1176	PF00111	2Fe-2S iron-sulfur cluster binding domain
YP_1176	PF03473	MOSC domain
YP_1176	PF03476	MOSC N-terminal beta barrel domain
YP_1177	PF07126	YP_1177
YP_1178	PF01180	Dihydroorotate dehydrogenase
YP_1179	PF01433	Peptidase family M1
YP_1179	PF11940	Domain of unknown function (DUF3458)
YP_1179	PF17432	YP_1179
YP_1180	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
YP_1181	PF00152	tRNA synthetases class II (D, K and N)
YP_1181	PF01336	OB-fold nucleic acid binding domain
YP_1182	PF00267	Gram-negative porin
YP_1183	PF00155	Aminotransferase class I and II
YP_1184	PF00753	Metallo-beta-lactamase superfamily
YP_1185	PF05951	YP_1185
YP_1186	PF01471	Putative peptidoglycan binding domain
YP_1186	PF03734	L,D-transpeptidase catalytic domain
YP_1187	PF01797	Transposase IS200 like
YP_1188	PF04310	MukB N-terminal
YP_1188	PF13558	Putative exonuclease SbcCD, C subunit
YP_1188	PF16330	YP_1188
YP_1189	PF04288	MukE-like family
YP_1190	PF03882	KicB killing factor
YP_1190	PF17192	YP_1190
YP_1190	PF17193	YP_1190
YP_1191	PF13847	Methyltransferase domain
YP_1192	PF03881	Fructosamine kinase
YP_1193	PF02348	Cytidylyltransferase
YP_1194	PF03966	Trm112p-like protein
YP_1195	PF00313	'Cold-shock' DNA-binding domain
YP_1196	PF07063	Domain of unknown function (DUF1338)
YP_1197	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
YP_1198	PF00005	ABC transporter
YP_1198	PF00664	ABC transporter transmembrane region
YP_1199	PF00753	Metallo-beta-lactamase superfamily
YP_1199	PF03772	YP_1199
YP_1199	PF13567	YP_1199
YP_1200	PF00216	Bacterial DNA-binding protein
YP_1201	PF00575	S1 RNA binding domain
YP_1202	PF02224	Cytidylate kinase
YP_1203	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
YP_1204	PF00266	Aminotransferase class-V
YP_1205	PF03895	YadA-like C-terminal region
YP_1206	PF03895	YadA-like C-terminal region
YP_1207	PF00710	Asparaginase
YP_1208	PF02624	YcaO-like family
YP_1209	PF01226	Formate/nitrite transporter
YP_1210	PF01228	Glycine radical
YP_1210	PF02901	Pyruvate formate lyase
YP_1211	PF01755	YP_1211
YP_1212	PF04055	Radical SAM superfamily
YP_1212	PF13353	4Fe-4S single cluster domain
YP_1213	PF07690	Major Facilitator Superfamily
YP_1214	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
YP_1214	PF02403	Seryl-tRNA synthetase N-terminal domain
YP_1215	PF00004	ATPase family associated with various cellular activities (AAA)
YP_1215	PF12002	MgsA AAA+ ATPase C terminal
YP_1215	PF16193	YP_1215
YP_1216	PF03548	Outer membrane lipoprotein carrier protein LolA
YP_1217	PF01580	FtsK/SpoIIIE family
YP_1217	PF09397	Ftsk gamma domain
YP_1217	PF13491	YP_1217
YP_1218	PF01037	AsnC family
YP_1218	PF13412	Winged helix-turn-helix DNA-binding
YP_1219	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YP_1220	PF00005	ABC transporter
YP_1220	PF00664	ABC transporter transmembrane region
YP_1221	PF00005	ABC transporter
YP_1221	PF00664	ABC transporter transmembrane region
YP_1222	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
YP_1223	PF01176	Translation initiation factor 1A / IF-1
YP_1224	PF01797	Transposase IS200 like
YP_1225	PF00004	ATPase family associated with various cellular activities (AAA)
YP_1225	PF02861	Clp amino terminal domain
YP_1225	PF07724	AAA domain (Cdc48 subfamily)
YP_1225	PF10431	C-terminal, D2-small domain, of ClpB protein
YP_1226	PF02617	ATP-dependent Clp protease adaptor protein ClpS
YP_1228	PF00313	'Cold-shock' DNA-binding domain
YP_1229	PF00005	ABC transporter
YP_1229	PF02687	YP_1229
YP_1229	PF12704	MacB-like periplasmic core domain
YP_1230	PF16576	YP_1230
YP_1232	PF04393	YP_1232
YP_1233	PF11398	Protein of unknown function (DUF2813)
YP_1234	PF03956	YP_1234
YP_1235	PF03063	Prismane/CO dehydrogenase family
YP_1236	PF00111	2Fe-2S iron-sulfur cluster binding domain
YP_1236	PF00175	Oxidoreductase NAD-binding domain
YP_1236	PF00970	Oxidoreductase FAD-binding domain
YP_1237	PF00205	Thiamine pyrophosphate enzyme, central domain
YP_1237	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_1237	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YP_1239	PF01212	Beta-eliminating lyase
YP_1240	PF11066	YP_1240
YP_1240	PF13460	NADH(P)-binding
YP_1241	PF01370	NAD dependent epimerase/dehydratase family
YP_1242	PF12883	Protein of unknown function (DUF3828)
YP_1243	PF01817	Chorismate mutase type II
YP_1244	PF00005	ABC transporter
YP_1245	PF00497	Bacterial extracellular solute-binding proteins, family 3
YP_1246	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1247	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1248	PF00892	EamA-like transporter family
YP_1249	PF10100	YP_1249
YP_1250	PF03059	Nicotianamine synthase protein
YP_1251	PF00005	ABC transporter
YP_1252	PF01032	FecCD transport family
YP_1253	PF01497	Periplasmic binding protein
YP_1254	PF01145	SPFH domain / Band 7 family
YP_1256	PF00497	Bacterial extracellular solute-binding proteins, family 3
YP_1257	PF05958	tRNA (Uracil-5-)-methyltransferase
YP_1258	PF10767	YP_1258
YP_1259	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1260	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1261	PF00005	ABC transporter
YP_1261	PF08402	TOBE domain
YP_1262	PF13416	Bacterial extracellular solute-binding protein
YP_1263	PF10722	Putative bacterial sensory transduction regulator
YP_1264	PF07214	YP_1264
YP_1265	PF00462	Glutaredoxin
YP_1266	PF02080	TrkA-C domain
YP_1266	PF06826	YP_1266
YP_1267	PF01569	PAP2 superfamily
YP_1268	PF01569	PAP2 superfamily
YP_1269	PF01791	DeoC/LacD family aldolase
YP_1270	PF00455	YP_1270
YP_1271	PF03222	Tryptophan/tyrosine permease family
YP_1272	PF00768	D-alanyl-D-alanine carboxypeptidase
YP_1272	PF07943	Penicillin-binding protein 5, C-terminal domain
YP_1273	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1274	PF00005	ABC transporter
YP_1274	PF09383	NIL domain
YP_1275	PF03180	NLPA lipoprotein
YP_1276	PF03171	2OG-Fe(II) oxygenase superfamily
YP_1276	PF14226	non-haem dioxygenase in morphine synthesis N-terminal
YP_1277	PF12710	haloacid dehalogenase-like hydrolase
YP_1278	PF13417	Glutathione S-transferase, N-terminal domain
YP_1279	PF00593	TonB dependent receptor
YP_1279	PF07715	TonB-dependent Receptor Plug Domain
YP_1280	PF00005	ABC transporter
YP_1281	PF01032	FecCD transport family
YP_1282	PF01497	Periplasmic binding protein
YP_1283	PF00324	Amino acid permease
YP_1284	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_1284	PF03466	LysR substrate binding domain
YP_1285	PF03601	YP_1285
YP_1286	PF01261	Xylose isomerase-like TIM barrel
YP_1287	PF00577	Outer membrane usher protein
YP_1287	PF13953	PapC C-terminal domain
YP_1287	PF13954	PapC N-terminal domain
YP_1288	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YP_1288	PF02753	Pili assembly chaperone PapD, C-terminal domain
YP_1290	PF17550	YP_1290
YP_1291	PF00486	Transcriptional regulatory protein, C terminal
YP_1292	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YP_1292	PF02378	Phosphotransferase system, EIIC
YP_1293	PF00294	pfkB family carbohydrate kinase
YP_1294	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YP_1294	PF00381	PTS HPr component phosphorylation site
YP_1295	PF00293	NUDIX domain
YP_1296	PF02653	YP_1296
YP_1297	PF00005	ABC transporter
YP_1298	PF13407	Periplasmic binding protein domain
YP_1299	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
YP_1300	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YP_1300	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YP_1301	PF00171	Aldehyde dehydrogenase family
YP_1302	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YP_1303	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_1303	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YP_1304	PF13561	Enoyl-(Acyl carrier protein) reductase
YP_1306	PF03222	Tryptophan/tyrosine permease family
YP_1307	PF01132	Elongation factor P (EF-P) OB domain
YP_1307	PF08207	Elongation factor P (EF-P) KOW-like domain
YP_1307	PF09285	Elongation factor P, C-terminal
YP_1308	PF03786	D-mannonate dehydratase (UxuA)
YP_1309	PF01232	Mannitol dehydrogenase Rossmann domain
YP_1309	PF08125	Mannitol dehydrogenase C-terminal domain
YP_1310	PF00392	Bacterial regulatory proteins, gntR family
YP_1310	PF07729	FCD domain
YP_1312	PF02492	CobW/HypB/UreG, nucleotide-binding domain
YP_1312	PF07683	Cobalamin synthesis protein cobW C-terminal domain
YP_1313	PF01569	PAP2 superfamily
YP_1314	PF00877	NlpC/P60 family
YP_1315	PF00563	EAL domain
YP_1315	PF12792	YP_1315
YP_1316	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YP_1317	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1318	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1318	PF12911	YP_1318
YP_1319	PF00005	ABC transporter
YP_1319	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YP_1320	PF13989	YP_1320
YP_1321	PF07690	Major Facilitator Superfamily
YP_1322	PF00849	RNA pseudouridylate synthase
YP_1322	PF01479	S4 domain
YP_1323	PF00271	Helicase conserved C-terminal domain
YP_1323	PF04851	Type III restriction enzyme, res subunit
YP_1324	PF01386	Ribosomal L25p family
YP_1325	PF01797	Transposase IS200 like
YP_1326	PF00691	OmpA family
YP_1326	PF01389	OmpA-like transmembrane domain
YP_1327	PF03846	Cell division inhibitor SulA
YP_1328	PF04993	TfoX N-terminal domain
YP_1328	PF04994	TfoX C-terminal domain
YP_1329	PF12805	YP_1329
YP_1329	PF13515	YP_1329
YP_1330	PF03733	YP_1330
YP_1331	PF00580	UvrD/REP helicase N-terminal domain
YP_1331	PF12462	YP_1331
YP_1331	PF13361	UvrD-like helicase C-terminal domain
YP_1332	PF02142	MGS-like domain
YP_1333	PF09829	YP_1333
YP_1334	PF13380	CoA binding domain
YP_1335	PF08755	Hemimethylated DNA-binding protein YccV like
YP_1336	PF10672	S-adenosylmethionine-dependent methyltransferase
YP_1337	PF00708	Acylphosphatase
YP_1338	PF04358	DsrC like protein
YP_1339	PF13610	YP_1339
YP_1341	PF00665	Integrase core domain
YP_1341	PF02796	Helix-turn-helix domain of resolvase
YP_1342	PF01695	IstB-like ATP binding protein
YP_1343	PF01565	FAD binding domain
YP_1343	PF13480	Acetyltransferase (GNAT) domain
YP_1344	PF13561	Enoyl-(Acyl carrier protein) reductase
YP_1346	PF07977	FabA-like domain
YP_1347	PF00109	Beta-ketoacyl synthase, N-terminal domain
YP_1347	PF02801	Beta-ketoacyl synthase, C-terminal domain
YP_1348	PF13561	Enoyl-(Acyl carrier protein) reductase
YP_1349	PF01154	Hydroxymethylglutaryl-coenzyme A synthase N terminal
YP_1349	PF08540	Hydroxymethylglutaryl-coenzyme A synthase C terminal
YP_1350	PF00378	Enoyl-CoA hydratase/isomerase family
YP_1351	PF00378	Enoyl-CoA hydratase/isomerase family
YP_1352	PF13561	Enoyl-(Acyl carrier protein) reductase
YP_1353	PF13924	YP_1353
YP_1354	PF00550	Phosphopantetheine attachment site
YP_1355	PF00698	Acyl transferase domain
YP_1356	PF05591	YP_1356
YP_1357	PF05943	YP_1357
YP_1358	PF05936	YP_1358
YP_1359	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YP_1360	PF00691	OmpA family
YP_1361	PF05638	Protein of unknown function (DUF796)
YP_1362	PF00004	ATPase family associated with various cellular activities (AAA)
YP_1362	PF07724	AAA domain (Cdc48 subfamily)
YP_1362	PF10431	C-terminal, D2-small domain, of ClpB protein
YP_1363	PF05954	Phage late control gene D protein (GPD)
YP_1363	PF10106	YP_1363
YP_1363	PF13296	YP_1363
YP_1364	PF01551	Peptidase family M23
YP_1366	PF10106	YP_1366
YP_1367	PF01551	Peptidase family M23
YP_1371	PF06744	YP_1371
YP_1371	PF06761	YP_1371
YP_1373	PF05488	PAAR motif
YP_1373	PF15607	YP_1373
YP_1375	PF05947	YP_1375
YP_1376	PF06996	YP_1376
YP_1377	PF12790	Type VI secretion lipoprotein
YP_1378	PF04965	Gene 25-like lysozyme
YP_1379	PF06812	YP_1379
YP_1379	PF12486	YP_1379
YP_1380	PF16809	YP_1380
YP_1381	PF00005	ABC transporter
YP_1381	PF12848	ABC transporter
YP_1382	PF16809	YP_1382
YP_1383	PF00872	YP_1383
YP_1384	PF00899	ThiF family
YP_1385	PF00994	Probable molybdopterin binding domain
YP_1385	PF03453	MoeA N-terminal region (domain I and II)
YP_1385	PF03454	MoeA C-terminal region (domain IV)
YP_1386	PF04055	Radical SAM superfamily
YP_1387	PF00005	ABC transporter
YP_1388	PF13437	HlyD family secretion protein
YP_1391	PF00756	Putative esterase
YP_1392	PF00107	Zinc-binding dehydrogenase
YP_1392	PF08240	Alcohol dehydrogenase GroES-like domain
YP_1393	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_1393	PF03466	LysR substrate binding domain
YP_1394	PF06779	YP_1394
YP_1395	PF01227	GTP cyclohydrolase I
YP_1396	PF04235	YP_1396
YP_1397	PF13407	Periplasmic binding protein domain
YP_1398	PF00005	ABC transporter
YP_1399	PF02653	YP_1399
YP_1400	PF02698	DUF218 domain
YP_1401	PF00390	Malic enzyme, N-terminal domain
YP_1401	PF03949	Malic enzyme, NAD binding domain
YP_1402	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
YP_1402	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region
YP_1403	PF04172	YP_1403
YP_1404	PF03788	YP_1404
YP_1405	PF07690	Major Facilitator Superfamily
YP_1406	PF08309	YP_1406
YP_1407	PF13407	Periplasmic binding protein domain
YP_1410	PF01797	Transposase IS200 like
YP_1411	PF01588	Putative tRNA binding domain
YP_1411	PF09334	tRNA synthetases class I (M)
YP_1412	PF10609	ParA/MinD ATPase like
YP_1413	PF00485	Phosphoribulokinase / Uridine kinase family
YP_1414	PF00692	dUTPase
YP_1415	PF05170	YP_1415
YP_1415	PF13502	YP_1415
YP_1416	PF00571	CBS domain
YP_1416	PF03471	Transporter associated domain
YP_1416	PF03741	YP_1416
YP_1417	PF06276	Ferric iron reductase FhuF-like transporter
YP_1417	PF11575	YP_1417
YP_1418	PF00282	Pyridoxal-dependent decarboxylase conserved domain
YP_1419	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
YP_1420	PF13523	Acetyltransferase (GNAT) domain
YP_1421	PF04183	IucA / IucC family
YP_1421	PF06276	Ferric iron reductase FhuF-like transporter
YP_1422	PF00005	ABC transporter
YP_1423	PF01032	FecCD transport family
YP_1424	PF01032	FecCD transport family
YP_1425	PF01497	Periplasmic binding protein
YP_1426	PF00593	TonB dependent receptor
YP_1426	PF07715	TonB-dependent Receptor Plug Domain
YP_1427	PF04183	IucA / IucC family
YP_1427	PF06276	Ferric iron reductase FhuF-like transporter
YP_1428	PF00483	Nucleotidyl transferase
YP_1429	PF00483	Nucleotidyl transferase
YP_1430	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
YP_1430	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
YP_1431	PF01502	Phosphoribosyl-AMP cyclohydrolase
YP_1431	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
YP_1432	PF00977	Histidine biosynthesis protein
YP_1433	PF00977	Histidine biosynthesis protein
YP_1434	PF00117	Glutamine amidotransferase class-I
YP_1435	PF00475	Imidazoleglycerol-phosphate dehydratase
YP_1435	PF13242	HAD-hyrolase-like
YP_1436	PF00155	Aminotransferase class I and II
YP_1437	PF00815	Histidinol dehydrogenase
YP_1438	PF01634	ATP phosphoribosyltransferase
YP_1438	PF08029	HisG, C-terminal domain
YP_1440	PF01370	NAD dependent epimerase/dehydratase family
YP_1441	PF16695	YP_1441
YP_1442	PF02653	YP_1442
YP_1444	PF00465	Iron-containing alcohol dehydrogenase
YP_1445	PF13520	Amino acid permease
YP_1446	PF00929	Exonuclease
YP_1446	PF08411	Exonuclease C-terminal
YP_1447	PF07993	Male sterility protein
YP_1448	PF04363	YP_1448
YP_1451	PF07690	Major Facilitator Superfamily
YP_1452	PF04134	YP_1452
YP_1453	PF13561	Enoyl-(Acyl carrier protein) reductase
YP_1454	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YP_1455	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
YP_1455	PF13378	Enolase C-terminal domain-like
YP_1457	PF01070	FMN-dependent dehydrogenase
YP_1458	PF00764	Arginosuccinate synthase
YP_1459	PF01554	MatE
YP_1460	PF07690	Major Facilitator Superfamily
YP_1461	PF01522	Polysaccharide deacetylase
YP_1463	PF09831	YP_1463
YP_1464	PF00072	Response regulator receiver domain
YP_1464	PF00196	Bacterial regulatory proteins, luxR family
YP_1465	PF06808	YP_1465
YP_1466	PF04290	YP_1466
YP_1467	PF03480	Bacterial extracellular solute-binding protein, family 7
YP_1468	PF01648	4'-phosphopantetheinyl transferase superfamily
YP_1469	PF02065	Melibiase
YP_1469	PF16875	YP_1469
YP_1470	PF01306	LacY proton/sugar symporter
YP_1471	PF00356	Bacterial regulatory proteins, lacI family
YP_1471	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YP_1472	PF06167	Glucose-regulated metallo-peptidase M90
YP_1473	PF03795	YCII-related domain
YP_1474	PF01163	RIO1 family
YP_1475	PF00005	ABC transporter
YP_1475	PF00664	ABC transporter transmembrane region
YP_1478	PF12833	Helix-turn-helix domain
YP_1479	PF10964	YP_1479
YP_1480	PF13996	YP_1480
YP_1481	PF13974	YP_1481
YP_1482	PF10765	Protein of unknown function (DUF2591)
YP_1483	PF13269	YP_1483
YP_1484	PF00324	Amino acid permease
YP_1485	PF07017	Antimicrobial peptide resistance and lipid A acylation protein PagP
YP_1486	PF00313	'Cold-shock' DNA-binding domain
YP_1487	PF02578	Multi-copper polyphenol oxidoreductase laccase
YP_1488	PF13847	Methyltransferase domain
YP_1490	PF00989	PAS fold
YP_1490	PF00990	GGDEF domain
YP_1490	PF13426	PAS domain
YP_1491	PF01695	IstB-like ATP binding protein
YP_1492	PF00665	Integrase core domain
YP_1492	PF02796	Helix-turn-helix domain of resolvase
YP_1496	PF08402	TOBE domain
YP_1497	PF00005	ABC transporter
YP_1498	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1499	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1500	PF01547	Bacterial extracellular solute-binding protein
YP_1501	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YP_1504	PF00392	Bacterial regulatory proteins, gntR family
YP_1504	PF07702	UTRA domain
YP_1509	PF14384	YP_1509
YP_1510	PF04365	Protein of unknown function (DUF497)
YP_1511	PF04717	Phage-related baseplate assembly protein
YP_1512	PF04965	Gene 25-like lysozyme
YP_1515	PF10908	YP_1515
YP_1518	PF01527	Transposase
YP_1519	PF00665	Integrase core domain
YP_1519	PF13565	YP_1519
YP_1520	PF05638	Protein of unknown function (DUF796)
YP_1526	PF01066	CDP-alcohol phosphatidyltransferase
YP_1527	PF01541	GIY-YIG catalytic domain
YP_1527	PF02151	UvrB/uvrC motif
YP_1527	PF08459	UvrC Helix-hairpin-helix N-terminal
YP_1527	PF14520	Helix-hairpin-helix domain
YP_1528	PF00072	Response regulator receiver domain
YP_1528	PF00196	Bacterial regulatory proteins, luxR family
YP_1529	PF10769	YP_1529
YP_1530	PF06942	YP_1530
YP_1533	PF13505	Outer membrane protein beta-barrel domain
YP_1534	PF00324	Amino acid permease
YP_1535	PF01344	Kelch motif
YP_1536	PF03358	NADPH-dependent FMN reductase
YP_1537	PF04261	Dyp-type peroxidase family
YP_1538	PF09375	Imelysin
YP_1538	PF13473	Cupredoxin-like domain
YP_1539	PF03239	YP_1539
YP_1540	PF00474	Sodium:solute symporter family
YP_1542	PF00171	Aldehyde dehydrogenase family
YP_1542	PF01619	Proline dehydrogenase
YP_1542	PF14850	DNA-binding domain of Proline dehydrogenase
YP_1545	PF00005	ABC transporter
YP_1546	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1547	PF00497	Bacterial extracellular solute-binding proteins, family 3
YP_1548	PF00291	Pyridoxal-phosphate dependent enzyme
YP_1549	PF02899	Phage integrase, N-terminal SAM-like domain
YP_1550	PF04539	Sigma-70 region 3
YP_1550	PF04542	Sigma-70 region 2
YP_1550	PF04545	Sigma-70, region 4
YP_1551	PF00669	Bacterial flagellin N-terminal helical region
YP_1551	PF00700	Bacterial flagellin C-terminal helical region
YP_1552	PF02465	YP_1552
YP_1552	PF07195	YP_1552
YP_1552	PF07196	Flagellin hook IN motif
YP_1553	PF02561	Flagellar protein FliS
YP_1554	PF05400	Flagellar protein FliT
YP_1556	PF12833	Helix-turn-helix domain
YP_1558	PF00730	HhH-GPD superfamily base excision DNA repair protein
YP_1559	PF02661	Fic/DOC family
YP_1561	PF02049	YP_1561
YP_1562	PF01514	Secretory protein of YscJ/FliF family
YP_1562	PF08345	YP_1562
YP_1563	PF01706	FliG C-terminal domain
YP_1563	PF14841	FliG middle domain
YP_1563	PF14842	FliG N-terminal domain
YP_1564	PF02108	YP_1564
YP_1565	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YP_1566	PF02050	Flagellar FliJ protein
YP_1567	PF02120	Flagellar hook-length control protein FliK
YP_1568	PF03748	YP_1568
YP_1569	PF01052	Surface presentation of antigens (SPOA)
YP_1569	PF02154	Flagellar motor switch protein FliM
YP_1570	PF01052	Surface presentation of antigens (SPOA)
YP_1570	PF16973	YP_1570
YP_1571	PF04347	YP_1571
YP_1572	PF00813	YP_1572
YP_1573	PF01313	YP_1573
YP_1574	PF01311	YP_1574
YP_1575	PF07927	YcfA-like protein
YP_1576	PF15919	YP_1576
YP_1577	PF00294	pfkB family carbohydrate kinase
YP_1578	PF02653	YP_1578
YP_1579	PF00005	ABC transporter
YP_1580	PF13407	Periplasmic binding protein domain
YP_1581	PF02653	YP_1581
YP_1582	PF00596	Class II Aldolase and Adducin N-terminal domain
YP_1582	PF13561	Enoyl-(Acyl carrier protein) reductase
YP_1583	PF04198	Putative sugar-binding domain
YP_1584	PF00669	Bacterial flagellin N-terminal helical region
YP_1585	PF00460	Flagella basal body rod protein
YP_1585	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YP_1586	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
YP_1586	PF10135	YP_1586
YP_1587	PF02119	YP_1587
YP_1588	PF02107	YP_1588
YP_1589	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YP_1590	PF00460	Flagella basal body rod protein
YP_1591	PF00460	Flagella basal body rod protein
YP_1591	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YP_1591	PF07559	Flagellar basal body protein FlaE
YP_1592	PF03963	YP_1592
YP_1592	PF13860	FlgD Ig-like domain
YP_1592	PF13861	FlgD Tudor-like domain
YP_1593	PF00460	Flagella basal body rod protein
YP_1593	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YP_1594	PF00460	Flagella basal body rod protein
YP_1595	PF13144	SAF-like
YP_1596	PF04316	Anti-sigma-28 factor, FlgM
YP_1597	PF05130	FlgN protein
YP_1599	PF01797	Transposase IS200 like
YP_1600	PF06366	YP_1600
YP_1601	PF00771	FHIPEP family
YP_1602	PF01312	FlhB HrpN YscU SpaS Family
YP_1604	PF07377	Protein of unknown function (DUF1493)
YP_1606	PF10709	YP_1606
YP_1607	PF05425	YP_1607
YP_1608	PF04234	CopC domain
YP_1610	PF00210	Ferritin-like domain
YP_1611	PF06440	DNA polymerase III, theta subunit
YP_1612	PF00561	alpha/beta hydrolase fold
YP_1613	PF00326	Prolyl oligopeptidase family
YP_1613	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
YP_1614	PF13995	YebF-like protein
YP_1615	PF04266	ASCH domain
YP_1616	PF07130	YebG protein
YP_1617	PF00270	DEAD/DEAH box helicase
YP_1617	PF00271	Helicase conserved C-terminal domain
YP_1617	PF03880	DbpA RNA binding domain
YP_1618	PF02222	ATP-grasp domain
YP_1619	PF03701	YP_1619
YP_1620	PF00425	chorismate binding enzyme
YP_1620	PF04715	Anthranilate synthase component I, N terminal region
YP_1621	PF00293	NUDIX domain
YP_1622	PF03313	YP_1622
YP_1622	PF03315	Serine dehydratase beta chain
YP_1623	PF01613	Flavin reductase like domain
YP_1624	PF03241	4-hydroxyphenylacetate 3-hydroxylase C terminal
YP_1624	PF11794	4-hydroxyphenylacetate 3-hydroxylase N terminal
YP_1625	PF07690	Major Facilitator Superfamily
YP_1625	PF11700	YP_1625
YP_1626	PF03328	HpcH/HpaI aldolase/citrate lyase family
YP_1628	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase
YP_1629	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
YP_1630	PF00171	Aldehyde dehydrogenase family
YP_1632	PF01047	MarR family
YP_1633	PF00571	CBS domain
YP_1633	PF03471	Transporter associated domain
YP_1633	PF03741	YP_1633
YP_1634	PF03610	PTS system fructose IIA component
YP_1634	PF03830	PTS system sorbose subfamily IIB component
YP_1635	PF03609	YP_1635
YP_1636	PF03613	YP_1636
YP_1637	PF06173	YP_1637
YP_1638	PF02659	YP_1638
YP_1641	PF00665	Integrase core domain
YP_1641	PF02796	Helix-turn-helix domain of resolvase
YP_1642	PF01695	IstB-like ATP binding protein
YP_1643	PF01258	Prokaryotic dksA/traR C4-type zinc finger
YP_1644	PF11198	YP_1644
YP_1646	PF05930	Prophage CP4-57 regulatory protein (AlpA)
YP_1649	PF00593	TonB dependent receptor
YP_1649	PF07715	TonB-dependent Receptor Plug Domain
YP_1650	PF00501	AMP-binding enzyme
YP_1650	PF13193	AMP-binding enzyme C-terminal domain
YP_1651	PF00975	Thioesterase domain
YP_1652	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YP_1653	PF00109	Beta-ketoacyl synthase, N-terminal domain
YP_1653	PF00550	Phosphopantetheine attachment site
YP_1653	PF00668	Condensation domain
YP_1653	PF00698	Acyl transferase domain
YP_1653	PF00975	Thioesterase domain
YP_1653	PF02801	Beta-ketoacyl synthase, C-terminal domain
YP_1653	PF08242	Methyltransferase domain
YP_1653	PF08659	KR domain
YP_1653	PF16197	YP_1653
YP_1654	PF00501	AMP-binding enzyme
YP_1654	PF00550	Phosphopantetheine attachment site
YP_1654	PF00668	Condensation domain
YP_1654	PF08242	Methyltransferase domain
YP_1655	PF12833	Helix-turn-helix domain
YP_1656	PF00005	ABC transporter
YP_1656	PF00664	ABC transporter transmembrane region
YP_1657	PF00005	ABC transporter
YP_1657	PF00664	ABC transporter transmembrane region
YP_1658	PF07690	Major Facilitator Superfamily
YP_1659	PF00425	chorismate binding enzyme
YP_1660	PF00589	Phage integrase family
YP_1660	PF13356	Domain of unknown function (DUF4102)
YP_1661	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YP_1661	PF02753	Pili assembly chaperone PapD, C-terminal domain
YP_1662	PF00419	Fimbrial protein
YP_1663	PF00577	Outer membrane usher protein
YP_1663	PF13953	PapC C-terminal domain
YP_1663	PF13954	PapC N-terminal domain
YP_1664	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YP_1664	PF02753	Pili assembly chaperone PapD, C-terminal domain
YP_1665	PF00419	Fimbrial protein
YP_1666	PF00072	Response regulator receiver domain
YP_1666	PF00497	Bacterial extracellular solute-binding proteins, family 3
YP_1666	PF00512	His Kinase A (phospho-acceptor) domain
YP_1666	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_1667	PF00072	Response regulator receiver domain
YP_1667	PF00196	Bacterial regulatory proteins, luxR family
YP_1668	PF02550	Acetyl-CoA hydrolase/transferase N-terminal domain
YP_1668	PF13336	Acetyl-CoA hydrolase/transferase C-terminal domain
YP_1669	PF01575	MaoC like domain
YP_1670	PF03328	HpcH/HpaI aldolase/citrate lyase family
YP_1671	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_1671	PF03466	LysR substrate binding domain
YP_1674	PF07690	Major Facilitator Superfamily
YP_1675	PF04909	Amidohydrolase
YP_1676	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_1676	PF03466	LysR substrate binding domain
YP_1677	PF02508	YP_1677
YP_1678	PF00155	Aminotransferase class I and II
YP_1679	PF00324	Amino acid permease
YP_1680	PF00455	YP_1680
YP_1680	PF08220	DeoR-like helix-turn-helix domain
YP_1682	PF04960	Glutaminase
YP_1683	PF07690	Major Facilitator Superfamily
YP_1685	PF03239	YP_1685
YP_1686	PF10634	Fe2+ transport protein
YP_1687	PF04945	YHS domain
YP_1687	PF10080	YP_1687
YP_1688	PF02687	YP_1688
YP_1689	PF02687	YP_1689
YP_1689	PF12704	MacB-like periplasmic core domain
YP_1690	PF00005	ABC transporter
YP_1691	PF00578	AhpC/TSA family
YP_1692	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
YP_1693	PF03848	Tellurite resistance protein TehB
YP_1693	PF09313	Domain of unknown function (DUF1971)
YP_1694	PF00557	Metallopeptidase family M24
YP_1694	PF01321	Creatinase/Prolidase N-terminal domain
YP_1696	PF01522	Polysaccharide deacetylase
YP_1696	PF14883	Hypothetical glycosyl hydrolase family 13
YP_1697	PF00535	Glycosyl transferase family 2
YP_1698	PF13994	YP_1698
YP_1699	PF13302	Acetyltransferase (GNAT) domain
YP_1701	PF00872	YP_1701
YP_1702	PF02562	PhoH-like protein
YP_1703	PF01699	Sodium/calcium exchanger protein
YP_1704	PF00672	HAMP domain
YP_1704	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_1704	PF07730	Histidine kinase
YP_1704	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
YP_1705	PF00155	Aminotransferase class I and II
YP_1705	PF00392	Bacterial regulatory proteins, gntR family
YP_1707	PF00202	Aminotransferase class-III
YP_1708	PF04958	Arginine N-succinyltransferase beta subunit
YP_1709	PF00171	Aldehyde dehydrogenase family
YP_1710	PF04996	Succinylarginine dihydrolase
YP_1711	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
YP_1712	PF00267	Gram-negative porin
YP_1713	PF05013	N-formylglutamate amidohydrolase
YP_1714	PF01979	Amidohydrolase family
YP_1716	PF01695	IstB-like ATP binding protein
YP_1717	PF00665	Integrase core domain
YP_1717	PF02796	Helix-turn-helix domain of resolvase
YP_1718	PF04266	ASCH domain
YP_1719	PF07351	YP_1719
YP_1720	PF05229	YP_1720
YP_1721	PF00577	Outer membrane usher protein
YP_1721	PF13953	PapC C-terminal domain
YP_1722	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YP_1723	PF05229	YP_1723
YP_1724	PF05229	YP_1724
YP_1725	PF05229	YP_1725
YP_1726	PF02470	YP_1726
YP_1727	PF04403	YP_1727
YP_1728	PF13185	GAF domain
YP_1729	PF04352	ProQ/FINO family
YP_1729	PF17516	YP_1729
YP_1730	PF00595	PDZ domain (Also known as DHR or GLGF)
YP_1730	PF03572	Peptidase family S41
YP_1730	PF11818	YP_1730
YP_1731	PF01435	Peptidase family M48
YP_1732	PF16970	YP_1732
YP_1733	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YP_1733	PF02753	Pili assembly chaperone PapD, C-terminal domain
YP_1734	PF00577	Outer membrane usher protein
YP_1734	PF13953	PapC C-terminal domain
YP_1734	PF13954	PapC N-terminal domain
YP_1735	PF00419	Fimbrial protein
YP_1736	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YP_1736	PF02753	Pili assembly chaperone PapD, C-terminal domain
YP_1737	PF07690	Major Facilitator Superfamily
YP_1738	PF14583	Oligogalacturonate lyase
YP_1739	PF01614	Bacterial transcriptional regulator
YP_1739	PF09339	IclR helix-turn-helix domain
YP_1740	PF01471	Putative peptidoglycan binding domain
YP_1740	PF01510	N-acetylmuramoyl-L-alanine amidase
YP_1741	PF00375	Sodium:dicarboxylate symporter family
YP_1742	PF04307	YP_1742
YP_1743	PF06178	Oligogalacturonate-specific porin protein (KdgM)
YP_1744	PF01547	Bacterial extracellular solute-binding protein
YP_1745	PF00005	ABC transporter
YP_1746	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1747	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1748	PF06917	Periplasmic pectate lyase
YP_1749	PF13561	Enoyl-(Acyl carrier protein) reductase
YP_1750	PF04962	KduI/IolB family
YP_1752	PF00872	YP_1752
YP_1753	PF05433	YP_1753
YP_1754	PF00270	DEAD/DEAH box helicase
YP_1754	PF00271	Helicase conserved C-terminal domain
YP_1754	PF02559	CarD-like/TRCF domain
YP_1754	PF03461	TRCF domain
YP_1755	PF02687	YP_1755
YP_1755	PF12704	MacB-like periplasmic core domain
YP_1756	PF00005	ABC transporter
YP_1757	PF02687	YP_1757
YP_1757	PF12704	MacB-like periplasmic core domain
YP_1758	PF00480	ROK family
YP_1759	PF00480	ROK family
YP_1760	PF02146	Sir2 family
YP_1761	PF01546	Peptidase family M20/M25/M40
YP_1761	PF07687	Peptidase dimerisation domain
YP_1762	PF08007	Cupin superfamily protein
YP_1763	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_1763	PF08918	PhoQ Sensor
YP_1764	PF00072	Response regulator receiver domain
YP_1764	PF00486	Transcriptional regulatory protein, C terminal
YP_1765	PF13505	Outer membrane protein beta-barrel domain
YP_1766	PF00206	Lyase
YP_1766	PF08328	Adenylosuccinate lyase C-terminal
YP_1767	PF04356	Protein of unknown function (DUF489)
YP_1768	PF03054	tRNA methyl transferase
YP_1769	PF00293	NUDIX domain
YP_1770	PF00849	RNA pseudouridylate synthase
YP_1771	PF00180	Isocitrate/isopropylmalate dehydrogenase
YP_1772	PF00356	Bacterial regulatory proteins, lacI family
YP_1772	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YP_1774	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YP_1774	PF08447	PAS fold
YP_1775	PF05368	NmrA-like family
YP_1776	PF01638	HxlR-like helix-turn-helix
YP_1778	PF00328	Histidine phosphatase superfamily (branch 2)
YP_1779	PF14001	YP_1779
YP_1780	PF11004	YP_1780
YP_1781	PF01037	AsnC family
YP_1781	PF13412	Winged helix-turn-helix DNA-binding
YP_1783	PF10777	YP_1783
YP_1784	PF00107	Zinc-binding dehydrogenase
YP_1784	PF08240	Alcohol dehydrogenase GroES-like domain
YP_1785	PF00703	Glycosyl hydrolases family 2
YP_1785	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
YP_1785	PF02837	Glycosyl hydrolases family 2, sugar binding domain
YP_1785	PF02929	Beta galactosidase small chain
YP_1785	PF16353	YP_1785
YP_1786	PF00313	'Cold-shock' DNA-binding domain
YP_1787	PF10781	YP_1787
YP_1790	PF02308	YP_1790
YP_1791	PF00122	E1-E2 ATPase
YP_1791	PF00689	Cation transporting ATPase, C-terminus
YP_1791	PF00690	Cation transporter/ATPase, N-terminus
YP_1791	PF00702	haloacid dehalogenase-like hydrolase
YP_1793	PF05280	Flagellar transcriptional activator (FlhC)
YP_1794	PF01618	YP_1794
YP_1795	PF00691	OmpA family
YP_1795	PF13677	YP_1795
YP_1796	PF01584	CheW-like domain
YP_1796	PF01627	Hpt domain
YP_1796	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_1796	PF02895	Signal transducing histidine kinase, homodimeric domain
YP_1796	PF09078	CheY binding
YP_1797	PF01584	CheW-like domain
YP_1798	PF07690	Major Facilitator Superfamily
YP_1799	PF01042	Endoribonuclease L-PSP
YP_1800	PF01261	Xylose isomerase-like TIM barrel
YP_1801	PF08348	YP_1801
YP_1801	PF13309	YP_1801
YP_1802	PF00872	YP_1802
YP_1803	PF03797	Autotransporter beta-domain
YP_1804	PF10101	YP_1804
YP_1806	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YP_1806	PF00672	HAMP domain
YP_1806	PF02203	Tar ligand binding domain homologue
YP_1807	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YP_1807	PF00672	HAMP domain
YP_1807	PF02203	Tar ligand binding domain homologue
YP_1808	PF01739	CheR methyltransferase, SAM binding domain
YP_1808	PF03705	CheR methyltransferase, all-alpha domain
YP_1809	PF00072	Response regulator receiver domain
YP_1809	PF01339	CheB methylesterase
YP_1810	PF00072	Response regulator receiver domain
YP_1811	PF04344	Chemotaxis phosphatase, CheZ
YP_1812	PF01510	N-acetylmuramoyl-L-alanine amidase
YP_1815	PF00872	YP_1815
YP_1819	PF01734	Patatin-like phospholipase
YP_1821	PF01695	IstB-like ATP binding protein
YP_1822	PF00665	Integrase core domain
YP_1822	PF02796	Helix-turn-helix domain of resolvase
YP_1824	PF01979	Amidohydrolase family
YP_1825	PF05962	HutD
YP_1826	PF00425	chorismate binding enzyme
YP_1828	PF01370	NAD dependent epimerase/dehydratase family
YP_1829	PF00753	Metallo-beta-lactamase superfamily
YP_1831	PF01370	NAD dependent epimerase/dehydratase family
YP_1831	PF13506	Glycosyl transferase family 21
YP_1835	PF00872	YP_1835
YP_1836	PF07661	YP_1836
YP_1836	PF08238	Sel1 repeat
YP_1837	PF13226	YP_1837
YP_1838	PF02502	Ribose/Galactose Isomerase
YP_1838	PF12408	Ribose-5-phosphate isomerase
YP_1839	PF08242	Methyltransferase domain
YP_1840	PF00106	short chain dehydrogenase
YP_1843	PF13646	HEAT repeats
YP_1844	PF12697	Alpha/beta hydrolase family
YP_1845	PF07883	Cupin domain
YP_1846	PF02627	Carboxymuconolactone decarboxylase family
YP_1847	PF00512	His Kinase A (phospho-acceptor) domain
YP_1847	PF00672	HAMP domain
YP_1847	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_1848	PF00072	Response regulator receiver domain
YP_1848	PF00486	Transcriptional regulatory protein, C terminal
YP_1849	PF01738	Dienelactone hydrolase family
YP_1850	PF12682	Flavodoxin
YP_1851	PF14358	YP_1851
YP_1852	PF13316	YP_1852
YP_1854	PF07859	alpha/beta hydrolase fold
YP_1855	PF00581	Rhodanese-like domain
YP_1856	PF00665	Integrase core domain
YP_1858	PF01926	50S ribosome-binding GTPase
YP_1858	PF06071	Protein of unknown function (DUF933)
YP_1859	PF01195	Peptidyl-tRNA hydrolase
YP_1860	PF10762	YP_1860
YP_1861	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
YP_1861	PF14572	Phosphoribosyl synthetase-associated domain
YP_1862	PF00288	GHMP kinases N terminal domain
YP_1862	PF08544	GHMP kinases C terminal
YP_1863	PF03550	Outer membrane lipoprotein LolB
YP_1864	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
YP_1864	PF01488	Shikimate / quinate 5-dehydrogenase
YP_1864	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
YP_1865	PF00472	RF-1 domain
YP_1865	PF03462	PCRF domain
YP_1866	PF13847	Methyltransferase domain
YP_1867	PF04247	YP_1867
YP_1868	PF13369	YP_1868
YP_1868	PF13371	Tetratricopeptide repeat
YP_1869	PF00793	DAHP synthetase I family
YP_1870	PF00916	YP_1870
YP_1870	PF01740	STAS domain
YP_1872	PF03009	Glycerophosphoryl diester phosphodiesterase family
YP_1873	PF13416	Bacterial extracellular solute-binding protein
YP_1874	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1875	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1877	PF01797	Transposase IS200 like
YP_1878	PF03009	Glycerophosphoryl diester phosphodiesterase family
YP_1879	PF00480	ROK family
YP_1879	PF13412	Winged helix-turn-helix DNA-binding
YP_1880	PF02811	PHP domain
YP_1881	PF02613	Nitrate reductase delta subunit
YP_1882	PF07273	Protein of unknown function (DUF1439)
YP_1883	PF07690	Major Facilitator Superfamily
YP_1884	PF13302	Acetyltransferase (GNAT) domain
YP_1885	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YP_1885	PF04337	Protein of unknown function, DUF480
YP_1886	PF03023	YP_1886
YP_1887	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YP_1887	PF08479	POTRA domain, ShlB-type
YP_1887	PF17287	YP_1887
YP_1889	PF00750	tRNA synthetases class I (R)
YP_1889	PF03485	Arginyl tRNA synthetase N terminal domain
YP_1889	PF05746	DALR anticodon binding domain
YP_1890	PF06185	YecM protein
YP_1891	PF03932	CutC family
YP_1892	PF08003	Protein of unknown function (DUF1698)
YP_1893	PF13649	Methyltransferase domain
YP_1894	PF01124	MAPEG family
YP_1895	PF01904	Protein of unknown function DUF72
YP_1896	PF00152	tRNA synthetases class II (D, K and N)
YP_1896	PF01336	OB-fold nucleic acid binding domain
YP_1896	PF02938	GAD domain
YP_1897	PF00293	NUDIX domain
YP_1898	PF01709	Transcriptional regulator
YP_1899	PF02075	Crossover junction endodeoxyribonuclease RuvC
YP_1900	PF01330	RuvA N terminal domain
YP_1900	PF07499	RuvA, C-terminal domain
YP_1900	PF14520	Helix-hairpin-helix domain
YP_1901	PF05491	Holliday junction DNA helicase ruvB C-terminus
YP_1901	PF05496	Holliday junction DNA helicase ruvB N-terminus
YP_1902	PF00950	YP_1902
YP_1903	PF00005	ABC transporter
YP_1904	PF01297	Periplasmic solute binding protein family
YP_1905	PF01551	Peptidase family M23
YP_1905	PF04225	Opacity-associated protein A LysM-like domain
YP_1905	PF08525	YP_1905
YP_1906	PF03279	YP_1906
YP_1907	PF00224	Pyruvate kinase, barrel domain
YP_1907	PF02887	Pyruvate kinase, alpha/beta domain
YP_1908	PF01380	SIS domain
YP_1908	PF01418	Helix-turn-helix domain, rpiR family
YP_1909	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
YP_1909	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
YP_1910	PF01081	KDPG and KHG aldolase
YP_1911	PF00893	Small Multidrug Resistance protein
YP_1912	PF00893	Small Multidrug Resistance protein
YP_1913	PF01042	Endoribonuclease L-PSP
YP_1914	PF06733	DEAD_2
YP_1914	PF13307	Helicase C-terminal domain
YP_1915	PF00814	Glycoprotease family
YP_1916	PF03843	YP_1916
YP_1917	PF00501	AMP-binding enzyme
YP_1917	PF13193	AMP-binding enzyme C-terminal domain
YP_1918	PF00570	HRDC domain
YP_1918	PF01612	3'-5' exonuclease
YP_1919	PF03776	Septum formation topological specificity factor MinE
YP_1920	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
YP_1921	PF03775	Septum formation inhibitor MinC, C-terminal domain
YP_1921	PF05209	Septum formation inhibitor MinC, N-terminal domain
YP_1923	PF05166	YcgL domain
YP_1924	PF13406	Transglycosylase SLT domain
YP_1925	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YP_1926	PF03692	YP_1926
YP_1928	PF00665	Integrase core domain
YP_1928	PF02796	Helix-turn-helix domain of resolvase
YP_1929	PF01695	IstB-like ATP binding protein
YP_1930	PF06806	Putative excisionase (DUF1233)
YP_1932	PF02086	D12 class N6 adenine-specific DNA methyltransferase
YP_1933	PF05772	NinB protein
YP_1934	PF05766	YP_1934
YP_1935	PF06530	YP_1935
YP_1937	PF02498	YP_1937
YP_1939	PF00872	YP_1939
YP_1940	PF07690	Major Facilitator Superfamily
YP_1941	PF00266	Aminotransferase class-V
YP_1944	PF02600	Disulfide bond formation protein DsbB
YP_1945	PF06450	YP_1945
YP_1946	PF00392	Bacterial regulatory proteins, gntR family
YP_1946	PF07840	FadR C-terminal domain
YP_1947	PF04293	YP_1947
YP_1948	PF01266	FAD dependent oxidoreductase
YP_1949	PF07690	Major Facilitator Superfamily
YP_1950	PF02678	Pirin
YP_1950	PF05726	Pirin C-terminal cupin domain
YP_1951	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_1951	PF03466	LysR substrate binding domain
YP_1952	PF00892	EamA-like transporter family
YP_1953	PF04285	YP_1953
YP_1954	PF06798	YP_1954
YP_1954	PF08298	PrkA AAA domain
YP_1955	PF06629	YP_1955
YP_1956	PF01263	Aldose 1-epimerase
YP_1957	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
YP_1957	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
YP_1958	PF01641	SelR domain
YP_1959	PF07023	YP_1959
YP_1960	PF00857	Isochorismatase family
YP_1961	PF00710	Asparaginase
YP_1962	PF01343	Peptidase family S49
YP_1963	PF00881	Nitroreductase family
YP_1964	PF00586	AIR synthase related protein, N-terminal domain
YP_1964	PF02769	AIR synthase related protein, C-terminal domain
YP_1965	PF01131	DNA topoisomerase
YP_1965	PF01751	Toprim domain
YP_1966	PF07383	YP_1966
YP_1967	PF00293	NUDIX domain
YP_1968	PF03372	Endonuclease/Exonuclease/phosphatase family
YP_1969	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_1970	PF00551	Formyl transferase
YP_1970	PF01842	ACT domain
YP_1971	PF02810	SEC-C motif
YP_1972	PF00072	Response regulator receiver domain
YP_1973	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
YP_1973	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
YP_1973	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
YP_1974	PF00816	H-NS histone family
YP_1975	PF00265	Thymidine kinase
YP_1976	PF00171	Aldehyde dehydrogenase family
YP_1976	PF00465	Iron-containing alcohol dehydrogenase
YP_1978	PF01914	YP_1978
YP_1979	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YP_1980	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1981	PF00528	Binding-protein-dependent transport system inner membrane component
YP_1981	PF12911	YP_1981
YP_1982	PF00005	ABC transporter
YP_1982	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YP_1983	PF00005	ABC transporter
YP_1983	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YP_1985	PF04269	Protein of unknown function, DUF440
YP_1986	PF13091	PLD-like domain
YP_1986	PF13396	YP_1986
YP_1988	PF13505	Outer membrane protein beta-barrel domain
YP_1990	PF13453	YP_1990
YP_1991	PF03795	YCII-related domain
YP_1992	PF03544	Gram-negative bacterial TonB protein C-terminal
YP_1992	PF16031	YP_1992
YP_1993	PF00872	YP_1993
YP_1994	PF03061	Thioesterase superfamily
YP_1995	PF04279	YP_1995
YP_1997	PF06790	YP_1997
YP_1999	PF03922	OmpW family
YP_2000	PF04972	BON domain
YP_2001	PF00290	Tryptophan synthase alpha chain
YP_2002	PF00291	Pyridoxal-phosphate dependent enzyme
YP_2003	PF00218	Indole-3-glycerol phosphate synthase
YP_2003	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
YP_2004	PF00591	Glycosyl transferase family, a/b domain
YP_2004	PF02885	Glycosyl transferase family, helical bundle domain
YP_2005	PF00117	Glutamine amidotransferase class-I
YP_2006	PF00425	chorismate binding enzyme
YP_2006	PF04715	Anthranilate synthase component I, N terminal region
YP_2008	PF02811	PHP domain
YP_2009	PF01300	Telomere recombination
YP_2010	PF00849	RNA pseudouridylate synthase
YP_2010	PF01479	S4 domain
YP_2011	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
YP_2011	PF12557	Cob(I)alamin adenosyltransferase N terminal
YP_2012	PF00106	short chain dehydrogenase
YP_2013	PF01343	Peptidase family S49
YP_2013	PF08496	YP_2013
YP_2014	PF10692	Protein of unknown function (DUF2498)
YP_2016	PF01131	DNA topoisomerase
YP_2016	PF01396	YP_2016
YP_2016	PF01751	Toprim domain
YP_2016	PF08272	Topoisomerase I zinc-ribbon-like
YP_2017	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_2017	PF03466	LysR substrate binding domain
YP_2019	PF00330	Aconitase family (aconitate hydratase)
YP_2019	PF00694	Aconitase C-terminal domain
YP_2020	PF00925	GTP cyclohydrolase II
YP_2022	PF01569	PAP2 superfamily
YP_2023	PF06305	YP_2023
YP_2024	PF13176	Tetratricopeptide repeat
YP_2024	PF13432	Tetratricopeptide repeat
YP_2026	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
YP_2027	PF01253	Translation initiation factor SUI1
YP_2029	PF00596	Class II Aldolase and Adducin N-terminal domain
YP_2030	PF09932	YP_2030
YP_2031	PF00923	Transaldolase
YP_2032	PF04328	YP_2032
YP_2033	PF02554	YP_2033
YP_2033	PF13722	YP_2033
YP_2034	PF00575	S1 RNA binding domain
YP_2034	PF00773	RNB domain
YP_2034	PF08206	Ribonuclease B OB domain
YP_2035	PF07690	Major Facilitator Superfamily
YP_2036	PF01370	NAD dependent epimerase/dehydratase family
YP_2037	PF00633	Helix-hairpin-helix motif
YP_2037	PF00730	HhH-GPD superfamily base excision DNA repair protein
YP_2037	PF10576	Iron-sulfur binding domain of endonuclease III
YP_2038	PF02508	YP_2038
YP_2039	PF04205	FMN-binding domain
YP_2040	PF03116	YP_2040
YP_2041	PF06445	GyrI-like small molecule binding domain
YP_2041	PF12833	Helix-turn-helix domain
YP_2042	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
YP_2042	PF10531	SLBB domain
YP_2042	PF13237	4Fe-4S dicluster domain
YP_2042	PF13375	RnfC Barrel sandwich hybrid domain
YP_2043	PF04060	Putative Fe-S cluster
YP_2043	PF14697	4Fe-4S dicluster domain
YP_2044	PF02508	YP_2044
YP_2045	PF10754	YP_2045
YP_2048	PF00005	ABC transporter
YP_2048	PF00664	ABC transporter transmembrane region
YP_2048	PF03412	Peptidase C39 family
YP_2049	PF02610	L-arabinose isomerase
YP_2049	PF11762	L-arabinose isomerase C-terminal domain
YP_2050	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YP_2050	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YP_2051	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YP_2052	PF00005	ABC transporter
YP_2053	PF02653	YP_2053
YP_2055	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YP_2055	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
YP_2056	PF13593	SBF-like CPA transporter family (DUF4137)
YP_2059	PF06097	YP_2059
YP_2060	PF01238	Phosphomannose isomerase type I
YP_2061	PF00206	Lyase
YP_2061	PF10415	Fumarase C C-terminus
YP_2062	PF05472	DNA replication terminus site-binding protein (Ter protein)
YP_2064	PF00480	ROK family
YP_2065	PF13500	AAA domain
YP_2066	PF00654	Voltage gated chloride channel
YP_2067	PF00356	Bacterial regulatory proteins, lacI family
YP_2067	PF13377	Periplasmic binding protein-like domain
YP_2071	PF13379	NMT1-like family
YP_2072	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2073	PF00005	ABC transporter
YP_2074	PF01048	Phosphorylase superfamily
YP_2074	PF10423	Bacterial AMP nucleoside phosphorylase N-terminus
YP_2076	PF07520	YP_2076
YP_2077	PF10139	YP_2077
YP_2078	PF07313	Protein of unknown function (DUF1460)
YP_2079	PF00205	Thiamine pyrophosphate enzyme, central domain
YP_2079	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_2079	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YP_2080	PF13710	ACT domain
YP_2081	PF13419	Haloacid dehalogenase-like hydrolase
YP_2082	PF13208	YP_2082
YP_2082	PF15615	YP_2082
YP_2083	PF00245	Alkaline phosphatase
YP_2084	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
YP_2084	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
YP_2085	PF00027	Cyclic nucleotide-binding domain
YP_2085	PF13545	Crp-like helix-turn-helix domain
YP_2086	PF00582	Universal stress protein family
YP_2087	PF02233	NAD(P) transhydrogenase beta subunit
YP_2088	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
YP_2088	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
YP_2088	PF12769	Domain of unknown function (DUF3814)
YP_2090	PF07338	Protein of unknown function (DUF1471)
YP_2091	PF13520	Amino acid permease
YP_2093	PF00072	Response regulator receiver domain
YP_2093	PF00486	Transcriptional regulatory protein, C terminal
YP_2095	PF00665	Integrase core domain
YP_2095	PF02796	Helix-turn-helix domain of resolvase
YP_2096	PF01695	IstB-like ATP binding protein
YP_2097	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
YP_2098	PF01797	Transposase IS200 like
YP_2099	PF03497	Anthrax toxin LF subunit
YP_2102	PF04264	YceI-like domain
YP_2103	PF01292	Prokaryotic cytochrome b561
YP_2106	PF00089	Trypsin
YP_2107	PF01381	Helix-turn-helix
YP_2108	PF05973	YP_2108
YP_2109	PF00270	DEAD/DEAH box helicase
YP_2109	PF00271	Helicase conserved C-terminal domain
YP_2109	PF04408	Helicase associated domain (HA2)
YP_2109	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
YP_2109	PF11898	YP_2109
YP_2110	PF02525	Flavodoxin-like fold
YP_2111	PF04198	Putative sugar-binding domain
YP_2112	PF01232	Mannitol dehydrogenase Rossmann domain
YP_2112	PF08125	Mannitol dehydrogenase C-terminal domain
YP_2113	PF07027	YP_2113
YP_2114	PF11739	YP_2114
YP_2115	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_2115	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YP_2116	PF03724	META domain
YP_2117	PF03891	YP_2117
YP_2118	PF02308	YP_2118
YP_2119	PF00893	Small Multidrug Resistance protein
YP_2120	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
YP_2120	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
YP_2120	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_2120	PF10371	Domain of unknown function
YP_2120	PF12838	4Fe-4S dicluster domain
YP_2120	PF17147	YP_2120
YP_2121	PF01171	PP-loop family
YP_2122	PF07859	alpha/beta hydrolase fold
YP_2123	PF13411	MerR HTH family regulatory protein
YP_2125	PF01544	CorA-like Mg2+ transporter protein
YP_2126	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YP_2127	PF00246	Zinc carboxypeptidase
YP_2128	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
YP_2128	PF13378	Enolase C-terminal domain-like
YP_2129	PF08534	Redoxin
YP_2130	PF01797	Transposase IS200 like
YP_2131	PF00158	Sigma-54 interaction domain
YP_2131	PF00989	PAS fold
YP_2132	PF09722	YP_2132
YP_2133	PF08808	YP_2133
YP_2134	PF05128	YP_2134
YP_2135	PF04317	YP_2135
YP_2136	PF09584	YP_2136
YP_2137	PF04024	YP_2137
YP_2138	PF06667	YP_2138
YP_2139	PF04012	YP_2139
YP_2140	PF00158	Sigma-54 interaction domain
YP_2140	PF02954	Bacterial regulatory protein, Fis family
YP_2141	PF01797	Transposase IS200 like
YP_2144	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YP_2145	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2146	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2146	PF12911	YP_2146
YP_2147	PF00005	ABC transporter
YP_2147	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YP_2148	PF00005	ABC transporter
YP_2150	PF00854	POT family
YP_2151	PF06930	YP_2151
YP_2152	PF11656	YP_2152
YP_2153	PF00043	Glutathione S-transferase, C-terminal domain
YP_2153	PF02798	Glutathione S-transferase, N-terminal domain
YP_2154	PF08543	Phosphomethylpyrimidine kinase
YP_2155	PF00579	tRNA synthetases class I (W and Y)
YP_2155	PF01479	S4 domain
YP_2156	PF01243	Pyridoxamine 5'-phosphate oxidase
YP_2156	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
YP_2157	PF09864	Membrane-bound lysozyme-inhibitor of c-type lysozyme
YP_2158	PF03702	Uncharacterised protein family (UPF0075)
YP_2159	PF05433	YP_2159
YP_2160	PF01047	MarR family
YP_2161	PF00248	Aldo/keto reductase family
YP_2162	PF06945	YP_2162
YP_2163	PF00884	Sulfatase
YP_2163	PF08019	YP_2163
YP_2164	PF00440	Bacterial regulatory proteins, tetR family
YP_2164	PF16925	YP_2164
YP_2165	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
YP_2167	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_2168	PF00929	Exonuclease
YP_2169	PF00462	Glutaredoxin
YP_2171	PF00877	NlpC/P60 family
YP_2172	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
YP_2172	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
YP_2173	PF00356	Bacterial regulatory proteins, lacI family
YP_2173	PF13377	Periplasmic binding protein-like domain
YP_2174	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_2174	PF03466	LysR substrate binding domain
YP_2175	PF07690	Major Facilitator Superfamily
YP_2176	PF02353	Mycolic acid cyclopropane synthetase
YP_2177	PF00677	Lumazine binding domain
YP_2179	PF01554	MatE
YP_2180	PF00224	Pyruvate kinase, barrel domain
YP_2180	PF02887	Pyruvate kinase, alpha/beta domain
YP_2181	PF04728	Lipoprotein leucine-zipper
YP_2182	PF01797	Transposase IS200 like
YP_2184	PF00665	Integrase core domain
YP_2184	PF02796	Helix-turn-helix domain of resolvase
YP_2185	PF01695	IstB-like ATP binding protein
YP_2186	PF02657	Fe-S metabolism associated domain
YP_2187	PF00266	Aminotransferase class-V
YP_2188	PF01458	Uncharacterized protein family (UPF0051)
YP_2189	PF00005	ABC transporter
YP_2190	PF01458	Uncharacterized protein family (UPF0051)
YP_2191	PF01521	Iron-sulphur cluster biosynthesis
YP_2193	PF03061	Thioesterase superfamily
YP_2194	PF01565	FAD binding domain
YP_2194	PF02913	FAD linked oxidases, C-terminal domain
YP_2194	PF13183	4Fe-4S dicluster domain
YP_2195	PF01594	YP_2195
YP_2196	PF00391	PEP-utilising enzyme, mobile domain
YP_2196	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
YP_2196	PF02896	PEP-utilising enzyme, TIM barrel domain
YP_2197	PF03618	YP_2197
YP_2198	PF00793	DAHP synthetase I family
YP_2200	PF03099	Biotin/lipoate A/B protein ligase family
YP_2200	PF10437	Bacterial lipoate protein ligase C-terminus
YP_2201	PF00877	NlpC/P60 family
YP_2204	PF00892	EamA-like transporter family
YP_2205	PF02366	YP_2205
YP_2206	PF01522	Polysaccharide deacetylase
YP_2207	PF00551	Formyl transferase
YP_2207	PF01370	NAD dependent epimerase/dehydratase family
YP_2207	PF02911	Formyl transferase, C-terminal domain
YP_2208	PF00535	Glycosyl transferase family 2
YP_2209	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
YP_2210	PF00005	ABC transporter
YP_2211	PF00255	Glutathione peroxidase
YP_2212	PF01032	FecCD transport family
YP_2213	PF10697	YP_2213
YP_2214	PF00216	Bacterial DNA-binding protein
YP_2215	PF01588	Putative tRNA binding domain
YP_2215	PF03147	Ferredoxin-fold anticodon binding domain
YP_2215	PF03483	B3/4 domain
YP_2215	PF03484	tRNA synthetase B5 domain
YP_2216	PF01409	tRNA synthetases class II core domain (F)
YP_2216	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
YP_2218	PF00453	Ribosomal protein L20
YP_2219	PF01632	Ribosomal protein L35
YP_2220	PF00707	Translation initiation factor IF-3, C-terminal domain
YP_2221	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
YP_2221	PF02824	TGS domain
YP_2221	PF03129	Anticodon binding domain
YP_2221	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
YP_2222	PF13619	YP_2222
YP_2225	PF01914	YP_2225
YP_2226	PF01464	Transglycosylase SLT domain
YP_2227	PF01297	Periplasmic solute binding protein family
YP_2228	PF00005	ABC transporter
YP_2229	PF00950	YP_2229
YP_2230	PF00950	YP_2230
YP_2231	PF03881	Fructosamine kinase
YP_2232	PF14002	YP_2232
YP_2233	PF13419	Haloacid dehalogenase-like hydrolase
YP_2234	PF00872	YP_2234
YP_2237	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YP_2238	PF05728	Uncharacterised protein family (UPF0227)
YP_2239	PF00933	Glycosyl hydrolase family 3 N terminal domain
YP_2240	PF01636	Phosphotransferase enzyme family
YP_2241	PF13036	Protein of unknown function (DUF3897)
YP_2242	PF07233	Protein of unknown function (DUF1425)
YP_2243	PF01230	HIT domain
YP_2244	PF08501	Shikimate dehydrogenase substrate binding domain
YP_2245	PF01797	Transposase IS200 like
YP_2246	PF00367	phosphotransferase system, EIIB
YP_2246	PF02378	Phosphotransferase system, EIIC
YP_2247	PF01026	TatD related DNase
YP_2248	PF09115	DNA polymerase III, delta subunit, C terminal
YP_2248	PF13177	DNA polymerase III, delta subunit
YP_2249	PF02223	Thymidylate kinase
YP_2250	PF02618	YceG-like family
YP_2251	PF01063	Aminotransferase class IV
YP_2252	PF01797	Transposase IS200 like
YP_2253	PF00109	Beta-ketoacyl synthase, N-terminal domain
YP_2253	PF02801	Beta-ketoacyl synthase, C-terminal domain
YP_2254	PF00550	Phosphopantetheine attachment site
YP_2255	PF13561	Enoyl-(Acyl carrier protein) reductase
YP_2256	PF00698	Acyl transferase domain
YP_2257	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
YP_2257	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YP_2258	PF02504	Fatty acid synthesis protein
YP_2259	PF01783	Ribosomal L32p protein family
YP_2260	PF02620	YP_2260
YP_2261	PF02545	Maf-like protein
YP_2262	PF00849	RNA pseudouridylate synthase
YP_2262	PF01479	S4 domain
YP_2263	PF00575	S1 RNA binding domain
YP_2263	PF10150	Ribonuclease E/G family
YP_2263	PF12111	Polyribonucleotide phosphorylase C terminal
YP_2265	PF01979	Amidohydrolase family
YP_2266	PF06183	DinI-like family
YP_2267	PF00872	YP_2267
YP_2268	PF01266	FAD dependent oxidoreductase
YP_2269	PF00196	Bacterial regulatory proteins, luxR family
YP_2270	PF01594	YP_2270
YP_2271	PF00581	Rhodanese-like domain
YP_2271	PF12368	YP_2271
YP_2274	PF00892	EamA-like transporter family
YP_2275	PF00765	Autoinducer synthetase
YP_2276	PF00196	Bacterial regulatory proteins, luxR family
YP_2276	PF03472	Autoinducer binding domain
YP_2277	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_2277	PF03466	LysR substrate binding domain
YP_2278	PF00083	Sugar (and other) transporter
YP_2279	PF08714	Formaldehyde-activating enzyme (Fae)
YP_2280	PF00248	Aldo/keto reductase family
YP_2281	PF09618	CRISPR-associated protein (Cas_Csy4)
YP_2282	PF09615	YP_2282
YP_2283	PF09614	YP_2283
YP_2284	PF09611	YP_2284
YP_2287	PF01867	CRISPR associated protein Cas1
YP_2288	PF00924	Mechanosensitive ion channel
YP_2292	PF08950	Protein of unknown function (DUF1861)
YP_2293	PF04041	Domain of unknown function (DUF377)
YP_2294	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2295	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2296	PF13416	Bacterial extracellular solute-binding protein
YP_2297	PF00356	Bacterial regulatory proteins, lacI family
YP_2297	PF13377	Periplasmic binding protein-like domain
YP_2298	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YP_2298	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_2298	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YP_2298	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YP_2299	PF00005	ABC transporter
YP_2299	PF08402	TOBE domain
YP_2302	PF14106	YP_2302
YP_2305	PF04829	YP_2305
YP_2305	PF05594	YP_2305
YP_2305	PF05860	haemagglutination activity domain
YP_2305	PF13018	YP_2305
YP_2305	PF13332	YP_2305
YP_2306	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YP_2306	PF08479	POTRA domain, ShlB-type
YP_2306	PF17287	YP_2306
YP_2307	PF00111	2Fe-2S iron-sulfur cluster binding domain
YP_2307	PF00175	Oxidoreductase NAD-binding domain
YP_2307	PF00970	Oxidoreductase FAD-binding domain
YP_2308	PF00355	Rieske [2Fe-2S] domain
YP_2308	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
YP_2309	PF02028	BCCT family transporter
YP_2311	PF00180	Isocitrate/isopropylmalate dehydrogenase
YP_2312	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_2312	PF03466	LysR substrate binding domain
YP_2313	PF00356	Bacterial regulatory proteins, lacI family
YP_2313	PF13407	Periplasmic binding protein domain
YP_2314	PF02653	YP_2314
YP_2315	PF00005	ABC transporter
YP_2316	PF13407	Periplasmic binding protein domain
YP_2317	PF00107	Zinc-binding dehydrogenase
YP_2317	PF08240	Alcohol dehydrogenase GroES-like domain
YP_2318	PF16809	YP_2318
YP_2319	PF16809	YP_2319
YP_2320	PF01545	Cation efflux family
YP_2321	PF13505	Outer membrane protein beta-barrel domain
YP_2322	PF00892	EamA-like transporter family
YP_2323	PF00583	Acetyltransferase (GNAT) family
YP_2324	PF13649	Methyltransferase domain
YP_2325	PF00210	Ferritin-like domain
YP_2326	PF02698	DUF218 domain
YP_2327	PF00497	Bacterial extracellular solute-binding proteins, family 3
YP_2328	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2329	PF00005	ABC transporter
YP_2330	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YP_2330	PF08448	PAS fold
YP_2330	PF13426	PAS domain
YP_2331	PF05971	Protein of unknown function (DUF890)
YP_2332	PF07338	Protein of unknown function (DUF1471)
YP_2333	PF00591	Glycosyl transferase family, a/b domain
YP_2333	PF02885	Glycosyl transferase family, helical bundle domain
YP_2334	PF00501	AMP-binding enzyme
YP_2335	PF13378	Enolase C-terminal domain-like
YP_2336	PF00378	Enoyl-CoA hydratase/isomerase family
YP_2337	PF12697	Alpha/beta hydrolase family
YP_2338	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_2338	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YP_2338	PF16582	YP_2338
YP_2339	PF00425	chorismate binding enzyme
YP_2341	PF05957	YP_2341
YP_2344	PF00920	Dehydratase family
YP_2346	PF07690	Major Facilitator Superfamily
YP_2347	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_2347	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YP_2348	PF00356	Bacterial regulatory proteins, lacI family
YP_2348	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YP_2349	PF02638	YP_2349
YP_2350	PF00106	short chain dehydrogenase
YP_2351	PF01202	Shikimate kinase
YP_2352	PF04074	Domain of unknown function (DUF386)
YP_2354	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
YP_2355	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
YP_2356	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
YP_2356	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
YP_2357	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
YP_2358	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
YP_2359	PF12838	4Fe-4S dicluster domain
YP_2360	PF00146	NADH dehydrogenase
YP_2361	PF00384	Molybdopterin oxidoreductase
YP_2361	PF01568	Molydopterin dinucleotide binding domain
YP_2361	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YP_2361	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
YP_2361	PF13510	2Fe-2S iron-sulfur cluster binding domain
YP_2362	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
YP_2362	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
YP_2363	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
YP_2364	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
YP_2364	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
YP_2365	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
YP_2366	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YP_2367	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_2367	PF03466	LysR substrate binding domain
YP_2369	PF00155	Aminotransferase class I and II
YP_2370	PF13023	HD domain
YP_2372	PF02080	TrkA-C domain
YP_2372	PF03600	Citrate transporter
YP_2373	PF13419	Haloacid dehalogenase-like hydrolase
YP_2374	PF03887	YfbU domain
YP_2375	PF04217	YP_2375
YP_2377	PF00871	Acetokinase family
YP_2378	PF01515	Phosphate acetyl/butaryl transferase
YP_2378	PF07085	DRTGG domain
YP_2378	PF13500	AAA domain
YP_2379	PF00356	Bacterial regulatory proteins, lacI family
YP_2379	PF13377	Periplasmic binding protein-like domain
YP_2380	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YP_2381	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YP_2382	PF03611	YP_2382
YP_2383	PF00293	NUDIX domain
YP_2384	PF12850	Calcineurin-like phosphoesterase superfamily domain
YP_2385	PF00563	EAL domain
YP_2386	PF01370	NAD dependent epimerase/dehydratase family
YP_2386	PF08338	Domain of unknown function (DUF1731)
YP_2387	PF00005	ABC transporter
YP_2388	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2389	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2390	PF00497	Bacterial extracellular solute-binding proteins, family 3
YP_2391	PF02441	Flavoprotein
YP_2392	PF00156	Phosphoribosyl transferase domain
YP_2392	PF13522	Glutamine amidotransferase domain
YP_2393	PF02674	YP_2393
YP_2394	PF05036	Sporulation related domain
YP_2395	PF02875	Mur ligase family, glutamate ligase domain
YP_2395	PF08245	Mur ligase middle domain
YP_2396	PF01039	Carboxyl transferase domain
YP_2397	PF09335	YP_2397
YP_2398	PF01416	tRNA pseudouridine synthase
YP_2399	PF01118	Semialdehyde dehydrogenase, NAD binding domain
YP_2399	PF02774	Semialdehyde dehydrogenase, dimerisation domain
YP_2400	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_2400	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YP_2400	PF11890	Domain of unknown function (DUF3410)
YP_2401	PF02311	AraC-like ligand binding domain
YP_2401	PF12833	Helix-turn-helix domain
YP_2402	PF00892	EamA-like transporter family
YP_2404	PF00419	Fimbrial protein
YP_2405	PF01177	Asp/Glu/Hydantoin racemase
YP_2406	PF00109	Beta-ketoacyl synthase, N-terminal domain
YP_2406	PF02801	Beta-ketoacyl synthase, C-terminal domain
YP_2407	PF01266	FAD dependent oxidoreductase
YP_2407	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
YP_2408	PF08891	YP_2408
YP_2409	PF04315	YP_2409
YP_2410	PF01925	YP_2410
YP_2411	PF03411	Penicillin-insensitive murein endopeptidase
YP_2412	PF01264	Chorismate synthase
YP_2413	PF05175	Methyltransferase small domain
YP_2414	PF01713	Smr domain
YP_2416	PF00300	Histidine phosphatase superfamily (branch 1)
YP_2417	PF00378	Enoyl-CoA hydratase/isomerase family
YP_2417	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
YP_2417	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_2418	PF00108	Thiolase, N-terminal domain
YP_2418	PF02803	Thiolase, C-terminal domain
YP_2419	PF04175	Protein of unknown function (DUF406)
YP_2420	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
YP_2421	PF04333	YP_2421
YP_2422	PF14559	Tetratricopeptide repeat
YP_2423	PF03918	Cytochrome C biogenesis protein
YP_2424	PF08534	Redoxin
YP_2425	PF01578	YP_2425
YP_2425	PF16327	YP_2425
YP_2426	PF03100	CcmE
YP_2427	PF04995	YP_2427
YP_2428	PF01578	YP_2428
YP_2429	PF03379	YP_2429
YP_2430	PF00005	ABC transporter
YP_2432	PF04011	LemA family
YP_2434	PF03831	PhnA protein
YP_2434	PF08274	PhnA Zinc-Ribbon
YP_2436	PF00872	YP_2436
YP_2437	PF04965	Gene 25-like lysozyme
YP_2438	PF07024	ImpE protein
YP_2440	PF05488	PAAR motif
YP_2441	PF05954	Phage late control gene D protein (GPD)
YP_2442	PF06744	YP_2442
YP_2442	PF06761	YP_2442
YP_2442	PF14331	YP_2442
YP_2444	PF01695	IstB-like ATP binding protein
YP_2445	PF00665	Integrase core domain
YP_2445	PF02796	Helix-turn-helix domain of resolvase
YP_2447	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YP_2448	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2449	PF00005	ABC transporter
YP_2449	PF00571	CBS domain
YP_2450	PF00268	Ribonucleotide reductase, small chain
YP_2451	PF00317	Ribonucleotide reductase, all-alpha domain
YP_2451	PF02867	Ribonucleotide reductase, barrel domain
YP_2451	PF08343	Ribonucleotide reductase N-terminal
YP_2452	PF07972	NrdI Flavodoxin like
YP_2453	PF00462	Glutaredoxin
YP_2455	PF09400	Protein of unknown function (DUF2002)
YP_2457	PF00872	YP_2457
YP_2458	PF06711	YP_2458
YP_2459	PF04899	YP_2459
YP_2460	PF00313	'Cold-shock' DNA-binding domain
YP_2461	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YP_2462	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2463	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2464	PF00005	ABC transporter
YP_2465	PF00005	ABC transporter
YP_2466	PF00547	Urease, gamma subunit
YP_2467	PF00699	Urease beta subunit
YP_2468	PF00449	Urease alpha-subunit, N-terminal domain
YP_2468	PF01979	Amidohydrolase family
YP_2469	PF02814	UreE urease accessory protein, N-terminal domain
YP_2469	PF05194	UreE urease accessory protein, C-terminal domain
YP_2470	PF01730	UreF
YP_2471	PF02492	CobW/HypB/UreG, nucleotide-binding domain
YP_2473	PF03253	Urea transporter
YP_2474	PF03824	YP_2474
YP_2475	PF06411	HdeA/HdeB family
YP_2476	PF02254	TrkA-N domain
YP_2476	PF07885	Ion channel
YP_2477	PF02537	YP_2477
YP_2478	PF02537	YP_2478
YP_2480	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YP_2481	PF02378	Phosphotransferase system, EIIC
YP_2482	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
YP_2483	PF02311	AraC-like ligand binding domain
YP_2483	PF12833	Helix-turn-helix domain
YP_2484	PF04794	YdjC-like protein
YP_2487	PF03925	SeqA protein
YP_2487	PF17206	YP_2487
YP_2488	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YP_2488	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_2488	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YP_2488	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YP_2490	PF00892	EamA-like transporter family
YP_2491	PF00072	Response regulator receiver domain
YP_2491	PF00486	Transcriptional regulatory protein, C terminal
YP_2492	PF00512	His Kinase A (phospho-acceptor) domain
YP_2492	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_2492	PF02702	Osmosensitive K+ channel His kinase sensor domain
YP_2492	PF13492	GAF domain
YP_2492	PF13493	Domain of unknown function (DUF4118)
YP_2493	PF02669	YP_2493
YP_2494	PF00122	E1-E2 ATPase
YP_2494	PF00702	haloacid dehalogenase-like hydrolase
YP_2495	PF03814	YP_2495
YP_2496	PF10725	YP_2496
YP_2498	PF08349	YP_2498
YP_2499	PF00875	DNA photolyase
YP_2499	PF03441	FAD binding domain of DNA photolyase
YP_2500	PF02112	YP_2500
YP_2501	PF01784	NIF3 (NGG1p interacting factor 3)
YP_2503	PF02626	Allophanate hydrolase subunit 2
YP_2504	PF03746	LamB/YcsF family
YP_2505	PF06149	YP_2505
YP_2506	PF06166	YP_2506
YP_2507	PF01470	Pyroglutamyl peptidase
YP_2508	PF03167	Uracil DNA glycosylase superfamily
YP_2509	PF01228	Glycine radical
YP_2510	PF11187	Protein of unknown function (DUF2974)
YP_2512	PF00270	DEAD/DEAH box helicase
YP_2512	PF00271	Helicase conserved C-terminal domain
YP_2513	PF05175	Methyltransferase small domain
YP_2514	PF00890	FAD binding domain
YP_2514	PF02910	Fumarate reductase flavoprotein C-term
YP_2515	PF04542	Sigma-70 region 2
YP_2515	PF08281	Sigma-70, region 4
YP_2516	PF03872	Anti sigma-E protein RseA, N-terminal domain
YP_2516	PF03873	Anti sigma-E protein RseA, C-terminal domain
YP_2517	PF03888	MucB/RseB family
YP_2517	PF17188	YP_2517
YP_2518	PF04246	YP_2518
YP_2520	PF00009	Elongation factor Tu GTP binding domain
YP_2520	PF00679	Elongation factor G C-terminus
YP_2520	PF03144	Elongation factor Tu domain 2
YP_2520	PF06421	GTP-binding protein LepA C-terminus
YP_2521	PF00717	Peptidase S24-like
YP_2521	PF10502	Signal peptidase, peptidase S26
YP_2522	PF00035	Double-stranded RNA binding motif
YP_2522	PF14622	Ribonuclease-III-like
YP_2523	PF01926	50S ribosome-binding GTPase
YP_2523	PF07650	KH domain
YP_2524	PF02565	Recombination protein O C terminal
YP_2524	PF11967	Recombination protein O N terminal
YP_2525	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
YP_2526	PF01648	4'-phosphopantetheinyl transferase superfamily
YP_2527	PF01797	Transposase IS200 like
YP_2528	PF12838	4Fe-4S dicluster domain
YP_2530	PF00665	Integrase core domain
YP_2530	PF02796	Helix-turn-helix domain of resolvase
YP_2531	PF01695	IstB-like ATP binding protein
YP_2532	PF01380	SIS domain
YP_2533	PF12710	haloacid dehalogenase-like hydrolase
YP_2534	PF14437	YP_2534
YP_2535	PF00497	Bacterial extracellular solute-binding proteins, family 3
YP_2535	PF01464	Transglycosylase SLT domain
YP_2536	PF02769	AIR synthase related protein, C-terminal domain
YP_2536	PF13507	CobB/CobQ-like glutamine amidotransferase domain
YP_2540	PF01797	Transposase IS200 like
YP_2541	PF00512	His Kinase A (phospho-acceptor) domain
YP_2541	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_2542	PF13942	YP_2542
YP_2543	PF00072	Response regulator receiver domain
YP_2543	PF00158	Sigma-54 interaction domain
YP_2544	PF00795	Carbon-nitrogen hydrolase
YP_2544	PF02540	NAD synthase
YP_2545	PF00543	Nitrogen regulatory protein P-II
YP_2547	PF00042	Globin
YP_2547	PF00175	Oxidoreductase NAD-binding domain
YP_2547	PF00970	Oxidoreductase FAD-binding domain
YP_2548	PF00464	Serine hydroxymethyltransferase
YP_2550	PF13505	Outer membrane protein beta-barrel domain
YP_2551	PF12832	MFS_1 like family
YP_2552	PF00874	PRD domain
YP_2553	PF06226	YP_2553
YP_2554	PF03824	YP_2554
YP_2555	PF00459	Inositol monophosphatase family
YP_2556	PF00588	SpoU rRNA Methylase family
YP_2557	PF02082	Transcriptional regulator
YP_2558	PF00266	Aminotransferase class-V
YP_2559	PF01592	NifU-like N terminal domain
YP_2560	PF01521	Iron-sulphur cluster biosynthesis
YP_2562	PF07743	HSCB C-terminal oligomerisation domain
YP_2563	PF00012	Hsp70 protein
YP_2564	PF00111	2Fe-2S iron-sulfur cluster binding domain
YP_2565	PF04384	Iron-sulphur cluster assembly
YP_2566	PF00883	Cytosol aminopeptidase family, catalytic domain
YP_2566	PF12404	YP_2566
YP_2567	PF07179	YP_2567
YP_2567	PF14581	YP_2567
YP_2569	PF00872	YP_2569
YP_2571	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YP_2571	PF02753	Pili assembly chaperone PapD, C-terminal domain
YP_2572	PF16970	YP_2572
YP_2573	PF00004	ATPase family associated with various cellular activities (AAA)
YP_2573	PF02861	Clp amino terminal domain
YP_2573	PF07724	AAA domain (Cdc48 subfamily)
YP_2573	PF10431	C-terminal, D2-small domain, of ClpB protein
YP_2574	PF05947	YP_2574
YP_2575	PF06996	YP_2575
YP_2576	PF06812	YP_2576
YP_2577	PF00419	Fimbrial protein
YP_2580	PF00691	OmpA family
YP_2581	PF08786	Domain of unknown function (DUF1795)
YP_2582	PF00196	Bacterial regulatory proteins, luxR family
YP_2583	PF13406	Transglycosylase SLT domain
YP_2584	PF13343	Bacterial extracellular solute-binding protein
YP_2585	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2586	PF00005	ABC transporter
YP_2587	PF09900	YP_2587
YP_2588	PF05638	Protein of unknown function (DUF796)
YP_2589	PF13988	YP_2589
YP_2590	PF00384	Molybdopterin oxidoreductase
YP_2590	PF01568	Molydopterin dinucleotide binding domain
YP_2590	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YP_2591	PF12800	4Fe-4S binding domain
YP_2591	PF13247	4Fe-4S dicluster domain
YP_2592	PF04976	YP_2592
YP_2593	PF02613	Nitrate reductase delta subunit
YP_2594	PF00037	4Fe-4S binding domain
YP_2594	PF12838	4Fe-4S dicluster domain
YP_2595	PF05643	Putative bacterial lipoprotein (DUF799)
YP_2596	PF16068	YP_2596
YP_2597	PF03783	Curli production assembly/transport component CsgG
YP_2598	PF15970	YP_2598
YP_2599	PF01292	Prokaryotic cytochrome b561
YP_2600	PF00155	Aminotransferase class I and II
YP_2601	PF07350	Protein of unknown function (DUF1479)
YP_2602	PF02685	Glucokinase
YP_2603	PF05232	YP_2603
YP_2604	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_2604	PF03466	LysR substrate binding domain
YP_2605	PF00248	Aldo/keto reductase family
YP_2606	PF10697	YP_2606
YP_2607	PF01566	YP_2607
YP_2608	PF01773	Na+ dependent nucleoside transporter N-terminus
YP_2608	PF07662	Na+ dependent nucleoside transporter C-terminus
YP_2608	PF07670	Nucleoside recognition
YP_2609	PF00749	tRNA synthetases class I (E and Q), catalytic domain
YP_2610	PF06042	Bacterial protein of unknown function (DUF925)
YP_2612	PF14282	YP_2612
YP_2613	PF12843	YP_2613
YP_2614	PF00533	BRCA1 C Terminus (BRCT) domain
YP_2614	PF01653	NAD-dependent DNA ligase adenylation domain
YP_2614	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
YP_2614	PF03120	NAD-dependent DNA ligase OB-fold domain
YP_2614	PF12826	Helix-hairpin-helix motif
YP_2614	PF14520	Helix-hairpin-helix domain
YP_2615	PF04354	ZipA, C-terminal FtsZ-binding domain
YP_2616	PF07264	Etoposide-induced protein 2
YP_2617	PF00291	Pyridoxal-phosphate dependent enzyme
YP_2618	PF00381	PTS HPr component phosphorylation site
YP_2619	PF00391	PEP-utilising enzyme, mobile domain
YP_2619	PF02896	PEP-utilising enzyme, TIM barrel domain
YP_2619	PF05524	PEP-utilising enzyme, N-terminal
YP_2620	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
YP_2621	PF01797	Transposase IS200 like
YP_2622	PF00512	His Kinase A (phospho-acceptor) domain
YP_2622	PF00672	HAMP domain
YP_2622	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_2623	PF00072	Response regulator receiver domain
YP_2623	PF00486	Transcriptional regulatory protein, C terminal
YP_2624	PF16576	YP_2624
YP_2625	PF00005	ABC transporter
YP_2625	PF02687	YP_2625
YP_2625	PF12704	MacB-like periplasmic core domain
YP_2626	PF00581	Rhodanese-like domain
YP_2626	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YP_2626	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YP_2628	PF11755	YP_2628
YP_2630	PF00155	Aminotransferase class I and II
YP_2631	PF00092	von Willebrand factor type A domain
YP_2632	PF00512	His Kinase A (phospho-acceptor) domain
YP_2632	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_2633	PF00072	Response regulator receiver domain
YP_2633	PF00486	Transcriptional regulatory protein, C terminal
YP_2635	PF00291	Pyridoxal-phosphate dependent enzyme
YP_2636	PF00005	ABC transporter
YP_2637	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2638	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2639	PF13531	Bacterial extracellular solute-binding protein
YP_2640	PF07690	Major Facilitator Superfamily
YP_2641	PF01380	SIS domain
YP_2641	PF01418	Helix-turn-helix domain, rpiR family
YP_2643	PF04074	Domain of unknown function (DUF386)
YP_2644	PF00480	ROK family
YP_2645	PF12468	Type III secretion system leucine rich repeat protein
YP_2645	PF13855	Leucine rich repeat
YP_2646	PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
YP_2647	PF00701	Dihydrodipicolinate synthetase family
YP_2648	PF04261	Dyp-type peroxidase family
YP_2649	PF06572	Protein of unknown function (DUF1131)
YP_2650	PF04076	Bacterial OB fold (BOF) protein
YP_2651	PF03212	Pertactin
YP_2651	PF03797	Autotransporter beta-domain
YP_2654	PF00583	Acetyltransferase (GNAT) family
YP_2655	PF01218	Coproporphyrinogen III oxidase
YP_2656	PF02639	YP_2656
YP_2657	PF00390	Malic enzyme, N-terminal domain
YP_2657	PF01515	Phosphate acetyl/butaryl transferase
YP_2657	PF03949	Malic enzyme, NAD binding domain
YP_2658	PF00293	NUDIX domain
YP_2659	PF03264	NapC/NirT cytochrome c family, N-terminal region
YP_2660	PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
YP_2661	PF00384	Molybdopterin oxidoreductase
YP_2661	PF01568	Molydopterin dinucleotide binding domain
YP_2661	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YP_2661	PF10518	TAT (twin-arginine translocation) pathway signal sequence
YP_2662	PF03927	NapD protein
YP_2663	PF12838	4Fe-4S dicluster domain
YP_2663	PF13187	4Fe-4S dicluster domain
YP_2664	PF00072	Response regulator receiver domain
YP_2664	PF00196	Bacterial regulatory proteins, luxR family
YP_2665	PF09904	Winged helix-turn helix
YP_2666	PF00873	AcrB/AcrD/AcrF family
YP_2668	PF04307	YP_2668
YP_2670	PF00005	ABC transporter
YP_2672	PF13416	Bacterial extracellular solute-binding protein
YP_2673	PF12688	Tetratrico peptide repeat
YP_2674	PF03960	ArsC family
YP_2675	PF01546	Peptidase family M20/M25/M40
YP_2675	PF07687	Peptidase dimerisation domain
YP_2676	PF02557	D-alanyl-D-alanine carboxypeptidase
YP_2677	PF13980	YP_2677
YP_2678	PF05127	Helicase
YP_2678	PF08351	Domain of unknown function (DUF1726)
YP_2678	PF13718	GNAT acetyltransferase 2
YP_2678	PF17176	YP_2678
YP_2679	PF04284	YP_2679
YP_2680	PF04228	YP_2680
YP_2681	PF01259	SAICAR synthetase
YP_2682	PF01797	Transposase IS200 like
YP_2683	PF06804	NlpB/DapX lipoprotein
YP_2684	PF00701	Dihydrodipicolinate synthetase family
YP_2685	PF13740	ACT domain
YP_2686	PF00578	AhpC/TSA family
YP_2690	PF01594	YP_2690
YP_2691	PF01435	Peptidase family M48
YP_2691	PF07720	Tetratricopeptide repeat
YP_2691	PF14559	Tetratricopeptide repeat
YP_2692	PF03960	ArsC family
YP_2693	PF00308	Bacterial dnaA  protein
YP_2694	PF01797	Transposase IS200 like
YP_2695	PF14681	Uracil phosphoribosyltransferase
YP_2696	PF00586	AIR synthase related protein, N-terminal domain
YP_2696	PF02769	AIR synthase related protein, C-terminal domain
YP_2697	PF00551	Formyl transferase
YP_2698	PF13302	Acetyltransferase (GNAT) domain
YP_2700	PF00005	ABC transporter
YP_2701	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2702	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2703	PF02503	Polyphosphate kinase middle domain
YP_2703	PF13089	Polyphosphate kinase N-terminal domain
YP_2703	PF13090	Polyphosphate kinase C-terminal domain
YP_2704	PF02541	Ppx/GppA phosphatase family
YP_2706	PF00571	CBS domain
YP_2706	PF01769	Divalent cation transporter
YP_2706	PF03448	MgtE intracellular N domain
YP_2707	PF00012	Hsp70 protein
YP_2708	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2709	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2710	PF13416	Bacterial extracellular solute-binding protein
YP_2711	PF00202	Aminotransferase class-III
YP_2712	PF00155	Aminotransferase class I and II
YP_2712	PF00392	Bacterial regulatory proteins, gntR family
YP_2713	PF00005	ABC transporter
YP_2713	PF08402	TOBE domain
YP_2714	PF13437	HlyD family secretion protein
YP_2714	PF13533	Biotin-lipoyl like
YP_2715	PF00873	AcrB/AcrD/AcrF family
YP_2716	PF00873	AcrB/AcrD/AcrF family
YP_2717	PF07690	Major Facilitator Superfamily
YP_2718	PF00512	His Kinase A (phospho-acceptor) domain
YP_2718	PF00672	HAMP domain
YP_2718	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_2719	PF00072	Response regulator receiver domain
YP_2719	PF00486	Transcriptional regulatory protein, C terminal
YP_2720	PF07411	Domain of unknown function (DUF1508)
YP_2721	PF01136	YP_2721
YP_2721	PF16325	YP_2721
YP_2722	PF00781	Diacylglycerol kinase catalytic domain
YP_2723	PF08816	Inhibitor of vertebrate lysozyme (Ivy)
YP_2725	PF08543	Phosphomethylpyrimidine kinase
YP_2726	PF06092	YP_2726
YP_2728	PF00872	YP_2728
YP_2730	PF06836	YP_2730
YP_2731	PF06836	YP_2731
YP_2732	PF06836	YP_2732
YP_2734	PF05638	Protein of unknown function (DUF796)
YP_2735	PF01797	Transposase IS200 like
YP_2736	PF00117	Glutamine amidotransferase class-I
YP_2736	PF00958	GMP synthase C terminal domain
YP_2736	PF02540	NAD synthase
YP_2737	PF00478	IMP dehydrogenase / GMP reductase domain
YP_2737	PF00571	CBS domain
YP_2738	PF02601	YP_2738
YP_2738	PF13742	YP_2738
YP_2739	PF07191	zinc-ribbons
YP_2740	PF03547	YP_2740
YP_2741	PF01926	50S ribosome-binding GTPase
YP_2741	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
YP_2742	PF13360	PQQ-like domain
YP_2743	PF09976	Tetratricopeptide repeat
YP_2744	PF03129	Anticodon binding domain
YP_2744	PF13393	Histidyl-tRNA synthetase
YP_2745	PF04551	GcpE protein
YP_2746	PF13413	Helix-turn-helix domain
YP_2746	PF13464	YP_2746
YP_2747	PF13181	Tetratricopeptide repeat
YP_2747	PF13431	Tetratricopeptide repeat
YP_2748	PF04055	Radical SAM superfamily
YP_2749	PF00334	Nucleoside diphosphate kinase
YP_2750	PF00030	Beta/Gamma crystallin
YP_2750	PF08964	Beta/Gamma crystallin
YP_2750	PF09101	Exotoxin A binding
YP_2752	PF03212	Pertactin
YP_2752	PF03797	Autotransporter beta-domain
YP_2754	PF00872	YP_2754
YP_2756	PF00419	Fimbrial protein
YP_2757	PF05591	YP_2757
YP_2758	PF05943	YP_2758
YP_2759	PF05638	Protein of unknown function (DUF796)
YP_2760	PF12790	Type VI secretion lipoprotein
YP_2761	PF05936	YP_2761
YP_2763	PF00665	Integrase core domain
YP_2763	PF02796	Helix-turn-helix domain of resolvase
YP_2764	PF01695	IstB-like ATP binding protein
YP_2766	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
YP_2767	PF00929	Exonuclease
YP_2768	PF00075	RNase H
YP_2769	PF08241	Methyltransferase domain
YP_2770	PF00753	Metallo-beta-lactamase superfamily
YP_2770	PF16123	YP_2770
YP_2771	PF01464	Transglycosylase SLT domain
YP_2771	PF01476	LysM domain
YP_2772	PF03372	Endonuclease/Exonuclease/phosphatase family
YP_2774	PF00248	Aldo/keto reductase family
YP_2775	PF13242	HAD-hyrolase-like
YP_2776	PF00005	ABC transporter
YP_2776	PF09383	NIL domain
YP_2777	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2778	PF03180	NLPA lipoprotein
YP_2779	PF16358	YP_2779
YP_2780	PF01980	Uncharacterised protein family UPF0066
YP_2781	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
YP_2781	PF03129	Anticodon binding domain
YP_2781	PF04073	Aminoacyl-tRNA editing domain
YP_2782	PF04170	NlpE N-terminal domain
YP_2782	PF17185	YP_2782
YP_2783	PF00472	RF-1 domain
YP_2784	PF07152	YaeQ protein
YP_2785	PF06786	YP_2785
YP_2786	PF07073	Modulator of Rho-dependent transcription termination (ROF)
YP_2787	PF00034	Cytochrome c
YP_2788	PF01171	PP-loop family
YP_2788	PF09179	TilS substrate binding domain
YP_2788	PF11734	TilS substrate C-terminal domain
YP_2789	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_2790	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
YP_2791	PF01336	OB-fold nucleic acid binding domain
YP_2791	PF02811	PHP domain
YP_2791	PF07733	Bacterial DNA polymerase III alpha subunit
YP_2791	PF14579	Helix-hairpin-helix motif
YP_2792	PF01351	Ribonuclease HII
YP_2793	PF02684	YP_2793
YP_2794	PF00132	Bacterial transferase hexapeptide (six repeats)
YP_2794	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
YP_2795	PF07977	FabA-like domain
YP_2796	PF00132	Bacterial transferase hexapeptide (six repeats)
YP_2796	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
YP_2797	PF03938	Outer membrane protein (OmpH-like)
YP_2798	PF01103	Surface antigen
YP_2798	PF07244	Surface antigen variable number repeat
YP_2799	PF00595	PDZ domain (Also known as DHR or GLGF)
YP_2799	PF02163	Peptidase family M50
YP_2800	PF01148	Cytidylyltransferase family
YP_2801	PF01255	Putative undecaprenyl diphosphate synthase
YP_2802	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
YP_2802	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
YP_2802	PF13288	DXP reductoisomerase C-terminal domain
YP_2804	PF01765	Ribosome recycling factor
YP_2805	PF00696	Amino acid kinase family
YP_2806	PF00889	Elongation factor TS
YP_2807	PF00318	Ribosomal protein S2
YP_2808	PF00557	Metallopeptidase family M24
YP_2809	PF01842	ACT domain
YP_2809	PF01909	Nucleotidyltransferase domain
YP_2809	PF01966	HD domain
YP_2809	PF08335	GlnD PII-uridylyltransferase
YP_2810	PF00132	Bacterial transferase hexapeptide (six repeats)
YP_2810	PF14602	Hexapeptide repeat of succinyl-transferase
YP_2810	PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal
YP_2811	PF11944	YP_2811
YP_2812	PF00258	Flavodoxin
YP_2813	PF00849	RNA pseudouridylate synthase
YP_2814	PF04287	tRNA pseudouridine synthase C
YP_2815	PF01797	Transposase IS200 like
YP_2816	PF07348	Syd protein (SUKH-2)
YP_2817	PF14489	QueF-like protein
YP_2817	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
YP_2818	PF03641	Possible lysine decarboxylase
YP_2818	PF11892	Domain of unknown function (DUF3412)
YP_2818	PF14793	Domain of unknown function (DUF4478)
YP_2819	PF01367	5'-3' exonuclease, C-terminal SAM fold
YP_2819	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
YP_2820	PF01728	FtsJ-like methyltransferase
YP_2821	PF04241	YP_2821
YP_2822	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_2822	PF03466	LysR substrate binding domain
YP_2823	PF00266	Aminotransferase class-V
YP_2824	PF02657	Fe-S metabolism associated domain
YP_2825	PF00899	ThiF family
YP_2826	PF03562	MltA specific insert domain
YP_2826	PF06725	3D domain
YP_2827	PF01520	N-acetylmuramoyl-L-alanine amidase
YP_2827	PF11741	AMIN domain
YP_2828	PF00583	Acetyltransferase (GNAT) family
YP_2828	PF00696	Amino acid kinase family
YP_2829	PF00665	Integrase core domain
YP_2829	PF02796	Helix-turn-helix domain of resolvase
YP_2830	PF01695	IstB-like ATP binding protein
YP_2832	PF02278	Polysaccharide lyase family 8, super-sandwich domain
YP_2832	PF02884	Polysaccharide lyase family 8, C-terminal beta-sandwich domain
YP_2832	PF09092	Lyase, N terminal
YP_2832	PF09093	Lyase, catalytic
YP_2833	PF03797	Autotransporter beta-domain
YP_2834	PF16946	YP_2834
YP_2837	PF00484	Carbonic anhydrase
YP_2839	PF11356	Type IV pilus biogenesis
YP_2840	PF00263	YP_2840
YP_2840	PF03958	Bacterial type II/III secretion system short domain
YP_2841	PF00437	Type II/IV secretion system protein
YP_2842	PF00482	Type II secretion system (T2SS), protein F
YP_2843	PF07963	Prokaryotic N-terminal methylation motif
YP_2843	PF08334	Type II secretion system (T2SS), protein G
YP_2844	PF07963	Prokaryotic N-terminal methylation motif
YP_2845	PF02501	Type II secretion system (T2SS), protein I
YP_2846	PF07963	Prokaryotic N-terminal methylation motif
YP_2846	PF11612	Type II secretion system (T2SS), protein J
YP_2847	PF03934	Type II secretion system (T2SS), protein K
YP_2848	PF05134	Type II secretion system (T2SS), protein L
YP_2848	PF12693	GspL periplasmic domain
YP_2850	PF01478	Type IV leader peptidase family
YP_2850	PF06750	YP_2850
YP_2851	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
YP_2853	PF00872	YP_2853
YP_2855	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YP_2855	PF02203	Tar ligand binding domain homologue
YP_2856	PF01323	DSBA-like thioredoxin domain
YP_2857	PF00753	Metallo-beta-lactamase superfamily
YP_2858	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_2858	PF03466	LysR substrate binding domain
YP_2859	PF07690	Major Facilitator Superfamily
YP_2860	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_2860	PF03466	LysR substrate binding domain
YP_2861	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
YP_2861	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
YP_2862	PF00356	Bacterial regulatory proteins, lacI family
YP_2862	PF13377	Periplasmic binding protein-like domain
YP_2863	PF00384	Molybdopterin oxidoreductase
YP_2863	PF01568	Molydopterin dinucleotide binding domain
YP_2864	PF00501	AMP-binding enzyme
YP_2864	PF01553	Acyltransferase
YP_2864	PF13193	AMP-binding enzyme C-terminal domain
YP_2865	PF07690	Major Facilitator Superfamily
YP_2868	PF00248	Aldo/keto reductase family
YP_2869	PF02976	DNA mismatch repair enzyme MutH
YP_2872	PF00293	NUDIX domain
YP_2873	PF00391	PEP-utilising enzyme, mobile domain
YP_2873	PF01590	GAF domain
YP_2873	PF02896	PEP-utilising enzyme, TIM barrel domain
YP_2873	PF05524	PEP-utilising enzyme, N-terminal
YP_2874	PF01790	YP_2874
YP_2875	PF00303	Thymidylate synthase
YP_2877	PF07963	Prokaryotic N-terminal methylation motif
YP_2879	PF10713	YP_2879
YP_2880	PF07963	Prokaryotic N-terminal methylation motif
YP_2880	PF12528	YP_2880
YP_2881	PF04257	Exodeoxyribonuclease V, gamma subunit
YP_2882	PF00675	Insulinase (Peptidase family M16)
YP_2882	PF05193	Peptidase M16 inactive domain
YP_2882	PF16187	YP_2882
YP_2883	PF00580	UvrD/REP helicase N-terminal domain
YP_2883	PF13361	UvrD-like helicase C-terminal domain
YP_2884	PF13538	UvrD-like helicase C-terminal domain
YP_2884	PF13604	AAA domain
YP_2885	PF01695	IstB-like ATP binding protein
YP_2886	PF00665	Integrase core domain
YP_2886	PF02796	Helix-turn-helix domain of resolvase
YP_2887	PF07681	YP_2887
YP_2888	PF13997	YP_2888
YP_2889	PF07332	YP_2889
YP_2890	PF05957	YP_2890
YP_2892	PF06476	YP_2892
YP_2893	PF13721	SecD export protein N-terminal TM region
YP_2894	PF09335	YP_2894
YP_2896	PF00392	Bacterial regulatory proteins, gntR family
YP_2896	PF07729	FCD domain
YP_2897	PF07690	Major Facilitator Superfamily
YP_2899	PF02614	Glucuronate isomerase
YP_2900	PF01232	Mannitol dehydrogenase Rossmann domain
YP_2900	PF08125	Mannitol dehydrogenase C-terminal domain
YP_2901	PF04295	YP_2901
YP_2901	PF08666	SAF domain
YP_2902	PF10688	YP_2902
YP_2903	PF01797	Transposase IS200 like
YP_2904	PF00375	Sodium:dicarboxylate symporter family
YP_2905	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YP_2906	PF01863	Protein of unknown function DUF45
YP_2907	PF03212	Pertactin
YP_2907	PF03797	Autotransporter beta-domain
YP_2908	PF05175	Methyltransferase small domain
YP_2909	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
YP_2909	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YP_2910	PF03729	YP_2910
YP_2912	PF00069	Protein kinase domain
YP_2913	PF13672	Protein phosphatase 2C
YP_2915	PF00092	von Willebrand factor type A domain
YP_2916	PF02342	TerD domain
YP_2917	PF00092	von Willebrand factor type A domain
YP_2918	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YP_2918	PF08479	POTRA domain, ShlB-type
YP_2918	PF17287	YP_2918
YP_2919	PF04829	YP_2919
YP_2919	PF05860	haemagglutination activity domain
YP_2919	PF13018	YP_2919
YP_2919	PF13332	YP_2919
YP_2922	PF15599	YP_2922
YP_2924	PF03797	Autotransporter beta-domain
YP_2925	PF13557	YP_2925
YP_2926	PF10091	Putative glucoamylase
YP_2927	PF00005	ABC transporter
YP_2927	PF08402	TOBE domain
YP_2929	PF00356	Bacterial regulatory proteins, lacI family
YP_2929	PF13377	Periplasmic binding protein-like domain
YP_2930	PF01547	Bacterial extracellular solute-binding protein
YP_2931	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2932	PF00528	Binding-protein-dependent transport system inner membrane component
YP_2934	PF00933	Glycosyl hydrolase family 3 N terminal domain
YP_2934	PF01915	Glycosyl hydrolase family 3 C-terminal domain
YP_2934	PF14310	Fibronectin type III-like domain
YP_2935	PF02321	Outer membrane efflux protein
YP_2936	PF04632	YP_2936
YP_2937	PF13437	HlyD family secretion protein
YP_2937	PF13533	Biotin-lipoyl like
YP_2938	PF17090	YP_2938
YP_2940	PF00155	Aminotransferase class I and II
YP_2941	PF03553	YP_2941
YP_2942	PF10604	Polyketide cyclase / dehydrase and lipid transport
YP_2943	PF08348	YP_2943
YP_2944	PF01042	Endoribonuclease L-PSP
YP_2945	PF01042	Endoribonuclease L-PSP
YP_2946	PF08803	Putative mono-oxygenase ydhR
YP_2948	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_2948	PF03466	LysR substrate binding domain
YP_2956	PF00872	YP_2956
YP_2958	PF00140	Sigma-70 factor, region 1
YP_2958	PF03979	Sigma-70 factor, region 1
YP_2958	PF04539	Sigma-70 region 3
YP_2958	PF04542	Sigma-70 region 2
YP_2958	PF04545	Sigma-70, region 4
YP_2958	PF04546	Sigma-70, non-essential region
YP_2959	PF01807	CHC2 zinc finger
YP_2959	PF08275	DNA primase catalytic core, N-terminal domain
YP_2959	PF08278	DNA primase DnaG DnaB-binding
YP_2959	PF10410	DnaB-helicase binding domain of primase
YP_2959	PF13155	Toprim-like
YP_2960	PF01165	Ribosomal protein S21
YP_2961	PF00814	Glycoprotease family
YP_2962	PF02660	YP_2962
YP_2963	PF02152	Dihydroneopterin aldolase
YP_2964	PF02673	YP_2964
YP_2965	PF01743	Poly A polymerase head domain
YP_2965	PF01966	HD domain
YP_2965	PF12627	Probable RNA and SrmB- binding site of polymerase A
YP_2966	PF08239	Bacterial SH3 domain
YP_2967	PF01928	CYTH domain
YP_2968	PF03710	Glutamate-ammonia ligase adenylyltransferase
YP_2968	PF08335	GlnD PII-uridylyltransferase
YP_2969	PF00294	pfkB family carbohydrate kinase
YP_2969	PF01467	Cytidylyltransferase
YP_2970	PF13520	Amino acid permease
YP_2971	PF04380	YP_2971
YP_2973	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
YP_2974	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
YP_2975	PF03738	Glutathionylspermidine synthase preATP-grasp
YP_2976	PF06693	YP_2976
YP_2978	PF02321	Outer membrane efflux protein
YP_2979	PF00293	NUDIX domain
YP_2980	PF06853	YP_2980
YP_2981	PF00149	Calcineurin-like phosphoesterase
YP_2982	PF05728	Uncharacterised protein family (UPF0227)
YP_2983	PF00204	DNA gyrase B
YP_2983	PF00986	DNA gyrase B subunit, carboxyl terminus
YP_2983	PF01751	Toprim domain
YP_2983	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_2984	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_2984	PF03466	LysR substrate binding domain
YP_2985	PF02525	Flavodoxin-like fold
YP_2987	PF00521	DNA gyrase/topoisomerase IV, subunit A
YP_2987	PF03989	DNA gyrase C-terminal domain, beta-propeller
YP_2988	PF01553	Acyltransferase
YP_2989	PF07731	Multicopper oxidase
YP_2989	PF07732	Multicopper oxidase
YP_2991	PF00248	Aldo/keto reductase family
YP_2993	PF00465	Iron-containing alcohol dehydrogenase
YP_2994	PF06719	YP_2994
YP_2994	PF12833	Helix-turn-helix domain
YP_2995	PF09335	YP_2995
YP_2996	PF01053	Cys/Met metabolism PLP-dependent enzyme
YP_2997	PF01618	YP_2997
YP_2998	PF02472	Biopolymer transport protein ExbD/TolR
YP_3000	PF16964	YP_3000
YP_3001	PF07811	YP_3001
YP_3003	PF00482	Type II secretion system (T2SS), protein F
YP_3004	PF00482	Type II secretion system (T2SS), protein F
YP_3005	PF00437	Type II/IV secretion system protein
YP_3009	PF01478	Type IV leader peptidase family
YP_3010	PF01797	Transposase IS200 like
YP_3012	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YP_3012	PF02753	Pili assembly chaperone PapD, C-terminal domain
YP_3013	PF00419	Fimbrial protein
YP_3014	PF01497	Periplasmic binding protein
YP_3016	PF11153	YP_3016
YP_3018	PF01312	FlhB HrpN YscU SpaS Family
YP_3019	PF01311	YP_3019
YP_3020	PF01313	YP_3020
YP_3021	PF00813	YP_3021
YP_3022	PF01052	Surface presentation of antigens (SPOA)
YP_3023	PF01052	Surface presentation of antigens (SPOA)
YP_3024	PF00158	Sigma-54 interaction domain
YP_3024	PF02954	Bacterial regulatory protein, Fis family
YP_3025	PF02049	YP_3025
YP_3026	PF01514	Secretory protein of YscJ/FliF family
YP_3026	PF08345	YP_3026
YP_3027	PF01706	FliG C-terminal domain
YP_3027	PF14841	FliG middle domain
YP_3027	PF14842	FliG N-terminal domain
YP_3028	PF02108	YP_3028
YP_3028	PF09811	YP_3028
YP_3029	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YP_3030	PF02050	Flagellar FliJ protein
YP_3031	PF05130	FlgN protein
YP_3032	PF04316	Anti-sigma-28 factor, FlgM
YP_3033	PF13144	SAF-like
YP_3034	PF00460	Flagella basal body rod protein
YP_3035	PF00460	Flagella basal body rod protein
YP_3035	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YP_3036	PF03963	YP_3036
YP_3036	PF13860	FlgD Ig-like domain
YP_3036	PF13861	FlgD Tudor-like domain
YP_3037	PF00460	Flagella basal body rod protein
YP_3037	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YP_3037	PF07559	Flagellar basal body protein FlaE
YP_3038	PF00460	Flagella basal body rod protein
YP_3038	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YP_3039	PF00460	Flagella basal body rod protein
YP_3039	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YP_3040	PF02107	YP_3040
YP_3041	PF02119	YP_3041
YP_3042	PF10135	YP_3042
YP_3043	PF00460	Flagella basal body rod protein
YP_3043	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YP_3047	PF00486	Transcriptional regulatory protein, C terminal
YP_3049	PF02465	YP_3049
YP_3049	PF07195	YP_3049
YP_3049	PF07196	Flagellin hook IN motif
YP_3050	PF02561	Flagellar protein FliS
YP_3052	PF02120	Flagellar hook-length control protein FliK
YP_3053	PF03748	YP_3053
YP_3054	PF04539	Sigma-70 region 3
YP_3054	PF04542	Sigma-70 region 2
YP_3054	PF04545	Sigma-70, region 4
YP_3055	PF01618	YP_3055
YP_3056	PF00691	OmpA family
YP_3056	PF13677	YP_3056
YP_3060	PF05656	YP_3060
YP_3062	PF10840	YP_3062
YP_3063	PF13518	Helix-turn-helix domain
YP_3064	PF00665	Integrase core domain
YP_3064	PF13276	YP_3064
YP_3066	PF04965	Gene 25-like lysozyme
YP_3067	PF05943	YP_3067
YP_3068	PF05591	YP_3068
YP_3069	PF05638	Protein of unknown function (DUF796)
YP_3072	PF07148	YP_3072
YP_3073	PF02264	LamB porin
YP_3074	PF00005	ABC transporter
YP_3074	PF08402	TOBE domain
YP_3076	PF13416	Bacterial extracellular solute-binding protein
YP_3077	PF00528	Binding-protein-dependent transport system inner membrane component
YP_3077	PF14785	Maltose transport system permease protein MalF P2 domain
YP_3078	PF00528	Binding-protein-dependent transport system inner membrane component
YP_3079	PF06146	YP_3079
YP_3080	PF00342	Phosphoglucose isomerase
YP_3081	PF00696	Amino acid kinase family
YP_3083	PF05860	haemagglutination activity domain
YP_3083	PF13332	YP_3083
YP_3084	PF00809	Pterin binding enzyme
YP_3084	PF02310	B12 binding domain
YP_3084	PF02574	Homocysteine S-methyltransferase
YP_3084	PF02607	B12 binding domain
YP_3084	PF02965	Vitamin B12 dependent methionine synthase, activation domain
YP_3085	PF01614	Bacterial transcriptional regulator
YP_3085	PF09339	IclR helix-turn-helix domain
YP_3086	PF06315	Isocitrate dehydrogenase kinase/phosphatase (AceK)
YP_3087	PF00463	Isocitrate lyase family
YP_3088	PF01274	Malate synthase
YP_3089	PF04204	Homoserine O-succinyltransferase
YP_3091	PF01808	AICARFT/IMPCHase bienzyme
YP_3091	PF02142	MGS-like domain
YP_3092	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
YP_3092	PF02843	Phosphoribosylglycinamide synthetase, C domain
YP_3092	PF02844	Phosphoribosylglycinamide synthetase, N domain
YP_3093	PF07356	YP_3093
YP_3094	PF00216	Bacterial DNA-binding protein
YP_3095	PF04222	Protein of unknown function (DUF416)
YP_3096	PF04493	Endonuclease V
YP_3097	PF01208	Uroporphyrinogen decarboxylase (URO-D)
YP_3099	PF00293	NUDIX domain
YP_3099	PF09297	NADH pyrophosphatase zinc ribbon domain
YP_3100	PF04353	Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
YP_3102	PF01964	ThiC family
YP_3102	PF13667	ThiC-associated domain
YP_3103	PF02581	Thiamine monophosphate synthase/TENI
YP_3104	PF00899	ThiF family
YP_3105	PF02597	ThiS family
YP_3106	PF05690	Thiazole biosynthesis protein ThiG
YP_3107	PF04055	Radical SAM superfamily
YP_3107	PF06968	Biotin and Thiamin Synthesis associated domain
YP_3109	PF00623	RNA polymerase Rpb1, domain 2
YP_3109	PF04983	RNA polymerase Rpb1, domain 3
YP_3109	PF04997	RNA polymerase Rpb1, domain 1
YP_3109	PF04998	RNA polymerase Rpb1, domain 5
YP_3109	PF05000	RNA polymerase Rpb1, domain 4
YP_3110	PF00562	RNA polymerase Rpb2, domain 6
YP_3110	PF04560	RNA polymerase Rpb2, domain 7
YP_3110	PF04561	RNA polymerase Rpb2, domain 2
YP_3110	PF04563	RNA polymerase beta subunit
YP_3110	PF04565	RNA polymerase Rpb2, domain 3
YP_3110	PF10385	RNA polymerase beta subunit external 1 domain
YP_3111	PF00542	Ribosomal protein L7/L12 C-terminal domain
YP_3112	PF00466	Ribosomal protein L10
YP_3113	PF00687	Ribosomal protein L1p/L10e family
YP_3114	PF00298	Ribosomal protein L11, RNA binding domain
YP_3114	PF03946	Ribosomal protein L11, N-terminal domain
YP_3115	PF00467	KOW motif
YP_3115	PF02357	Transcription termination factor nusG
YP_3116	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
YP_3117	PF00009	Elongation factor Tu GTP binding domain
YP_3117	PF03143	Elongation factor Tu C-terminal domain
YP_3117	PF03144	Elongation factor Tu domain 2
YP_3119	PF00665	Integrase core domain
YP_3119	PF13276	YP_3119
YP_3120	PF13518	Helix-turn-helix domain
YP_3121	PF00311	Phosphoenolpyruvate carboxylase
YP_3122	PF01546	Peptidase family M20/M25/M40
YP_3122	PF07687	Peptidase dimerisation domain
YP_3123	PF01118	Semialdehyde dehydrogenase, NAD binding domain
YP_3123	PF02774	Semialdehyde dehydrogenase, dimerisation domain
YP_3124	PF00696	Amino acid kinase family
YP_3125	PF00206	Lyase
YP_3125	PF14698	Argininosuccinate lyase C-terminal
YP_3126	PF00593	TonB dependent receptor
YP_3126	PF07715	TonB-dependent Receptor Plug Domain
YP_3127	PF06438	Heme-binding protein A (HasA)
YP_3128	PF00005	ABC transporter
YP_3128	PF00664	ABC transporter transmembrane region
YP_3129	PF13437	HlyD family secretion protein
YP_3129	PF13533	Biotin-lipoyl like
YP_3130	PF03544	Gram-negative bacterial TonB protein C-terminal
YP_3131	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YP_3131	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YP_3132	PF00462	Glutaredoxin
YP_3132	PF08534	Redoxin
YP_3133	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_3133	PF03466	LysR substrate binding domain
YP_3134	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YP_3134	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YP_3135	PF00440	Bacterial regulatory proteins, tetR family
YP_3136	PF07226	YP_3136
YP_3137	PF05958	tRNA (Uracil-5-)-methyltransferase
YP_3138	PF00593	TonB dependent receptor
YP_3138	PF07715	TonB-dependent Receptor Plug Domain
YP_3139	PF01177	Asp/Glu/Hydantoin racemase
YP_3140	PF13407	Periplasmic binding protein domain
YP_3141	PF00005	ABC transporter
YP_3142	PF02653	YP_3142
YP_3143	PF02653	YP_3143
YP_3144	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_3144	PF03466	LysR substrate binding domain
YP_3145	PF04219	YP_3145
YP_3146	PF01078	Magnesium chelatase, subunit ChlI
YP_3146	PF13335	YP_3146
YP_3146	PF13541	Subunit ChlI of Mg-chelatase
YP_3147	PF00205	Thiamine pyrophosphate enzyme, central domain
YP_3147	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_3147	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YP_3148	PF13710	ACT domain
YP_3149	PF01063	Aminotransferase class IV
YP_3150	PF00920	Dehydratase family
YP_3151	PF00291	Pyridoxal-phosphate dependent enzyme
YP_3151	PF00585	C-terminal regulatory domain of Threonine dehydratase
YP_3152	PF06092	YP_3152
YP_3153	PF06092	YP_3153
YP_3154	PF06092	YP_3154
YP_3155	PF11692	YP_3155
YP_3157	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_3157	PF03466	LysR substrate binding domain
YP_3158	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
YP_3158	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
YP_3163	PF01320	Colicin immunity protein / pyocin immunity protein
YP_3165	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YP_3165	PF02753	Pili assembly chaperone PapD, C-terminal domain
YP_3166	PF00419	Fimbrial protein
YP_3167	PF00577	Outer membrane usher protein
YP_3167	PF13953	PapC C-terminal domain
YP_3167	PF13954	PapC N-terminal domain
YP_3168	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YP_3168	PF02753	Pili assembly chaperone PapD, C-terminal domain
YP_3169	PF16970	YP_3169
YP_3171	PF05096	Glutamine cyclotransferase
YP_3172	PF13616	PPIC-type PPIASE domain
YP_3173	PF00580	UvrD/REP helicase N-terminal domain
YP_3173	PF13361	UvrD-like helicase C-terminal domain
YP_3175	PF02541	Ppx/GppA phosphatase family
YP_3176	PF00270	DEAD/DEAH box helicase
YP_3176	PF00271	Helicase conserved C-terminal domain
YP_3177	PF00085	Thioredoxin
YP_3178	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YP_3178	PF07497	Rho termination factor, RNA-binding domain
YP_3178	PF07498	Rho termination factor, N-terminal domain
YP_3179	PF00953	Glycosyl transferase family 4
YP_3180	PF02706	Chain length determinant protein
YP_3181	PF02350	UDP-N-acetylglucosamine 2-epimerase
YP_3182	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
YP_3182	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
YP_3182	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
YP_3183	PF16363	YP_3183
YP_3184	PF00483	Nucleotidyl transferase
YP_3185	PF00583	Acetyltransferase (GNAT) family
YP_3186	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
YP_3187	PF01943	YP_3187
YP_3188	PF07429	YP_3188
YP_3189	PF06899	YP_3189
YP_3190	PF03808	YP_3190
YP_3191	PF00324	Amino acid permease
YP_3193	PF01797	Transposase IS200 like
YP_3194	PF07219	YP_3194
YP_3195	PF04375	YP_3195
YP_3196	PF02602	Uroporphyrinogen-III synthase HemD
YP_3197	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
YP_3197	PF03900	Porphobilinogen deaminase, C-terminal domain
YP_3199	PF01295	YP_3199
YP_3199	PF12633	YP_3199
YP_3200	PF01491	Frataxin-like domain
YP_3201	PF13627	YP_3201
YP_3202	PF01678	Diaminopimelate epimerase
YP_3203	PF04340	Protein of unknown function, DUF484
YP_3204	PF00589	Phage integrase family
YP_3204	PF02899	Phage integrase, N-terminal SAM-like domain
YP_3205	PF00702	haloacid dehalogenase-like hydrolase
YP_3206	PF00580	UvrD/REP helicase N-terminal domain
YP_3206	PF13361	UvrD-like helicase C-terminal domain
YP_3207	PF00440	Bacterial regulatory proteins, tetR family
YP_3209	PF06792	Uncharacterised protein family (UPF0261)
YP_3210	PF09370	TIM-barrel signal transduction protein
YP_3211	PF01544	CorA-like Mg2+ transporter protein
YP_3212	PF00892	EamA-like transporter family
YP_3213	PF03061	Thioesterase superfamily
YP_3214	PF02253	Phospholipase A1
YP_3215	PF00270	DEAD/DEAH box helicase
YP_3215	PF00271	Helicase conserved C-terminal domain
YP_3215	PF00570	HRDC domain
YP_3215	PF09382	RQC domain
YP_3215	PF16124	YP_3215
YP_3216	PF01810	YP_3216
YP_3217	PF01810	YP_3217
YP_3218	PF12146	Putative lysophospholipase
YP_3219	PF08282	haloacid dehalogenase-like hydrolase
YP_3220	PF03272	YP_3220
YP_3221	PF03009	Glycerophosphoryl diester phosphodiesterase family
YP_3222	PF01266	FAD dependent oxidoreductase
YP_3222	PF04324	BFD-like [2Fe-2S] binding domain
YP_3223	PF00890	FAD binding domain
YP_3224	PF02754	YP_3224
YP_3224	PF13183	4Fe-4S dicluster domain
YP_3225	PF08786	Domain of unknown function (DUF1795)
YP_3226	PF02592	YP_3226
YP_3227	PF01206	Sulfurtransferase TusA
YP_3228	PF00122	E1-E2 ATPase
YP_3228	PF00403	Heavy-metal-associated domain
YP_3228	PF00702	haloacid dehalogenase-like hydrolase
YP_3229	PF07947	YP_3229
YP_3230	PF08850	YP_3230
YP_3231	PF10694	Protein of unknown function (DUF2500)
YP_3232	PF06611	YP_3232
YP_3233	PF03602	Conserved hypothetical protein 95
YP_3235	PF00448	SRP54-type protein, GTPase domain
YP_3235	PF02881	SRP54-type protein, helical bundle domain
YP_3236	PF00005	ABC transporter
YP_3237	PF02687	YP_3237
YP_3238	PF00140	Sigma-70 factor, region 1
YP_3238	PF04542	Sigma-70 region 2
YP_3238	PF04545	Sigma-70, region 4
YP_3239	PF01797	Transposase IS200 like
YP_3240	PF12568	Acetyltransferase (GNAT) domain
YP_3241	PF13458	Periplasmic binding protein
YP_3242	PF02653	YP_3242
YP_3243	PF02653	YP_3243
YP_3243	PF11862	YP_3243
YP_3244	PF00005	ABC transporter
YP_3244	PF12399	Branched-chain amino acid ATP-binding cassette transporter
YP_3245	PF00005	ABC transporter
YP_3251	PF16967	YP_3251
YP_3252	PF04449	CS1 type fimbrial major subunit
YP_3253	PF13416	Bacterial extracellular solute-binding protein
YP_3254	PF00528	Binding-protein-dependent transport system inner membrane component
YP_3255	PF00528	Binding-protein-dependent transport system inner membrane component
YP_3256	PF00005	ABC transporter
YP_3256	PF08402	TOBE domain
YP_3257	PF03009	Glycerophosphoryl diester phosphodiesterase family
YP_3258	PF03547	YP_3258
YP_3259	PF00892	EamA-like transporter family
YP_3260	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_3260	PF03466	LysR substrate binding domain
YP_3261	PF01717	Cobalamin-independent synthase, Catalytic domain
YP_3261	PF08267	Cobalamin-independent synthase, N-terminal domain
YP_3262	PF01738	Dienelactone hydrolase family
YP_3263	PF01048	Phosphorylase superfamily
YP_3264	PF13350	Tyrosine phosphatase family
YP_3265	PF02554	YP_3265
YP_3265	PF13722	YP_3265
YP_3266	PF09335	YP_3266
YP_3267	PF02646	YP_3267
YP_3268	PF01209	ubiE/COQ5 methyltransferase family
YP_3269	PF02036	SCP-2 sterol transfer family
YP_3270	PF03109	YP_3270
YP_3271	PF02416	mttA/Hcf106 family
YP_3273	PF00902	Sec-independent protein translocase protein (TatC)
YP_3275	PF00665	Integrase core domain
YP_3275	PF02796	Helix-turn-helix domain of resolvase
YP_3276	PF01695	IstB-like ATP binding protein
YP_3277	PF00490	Delta-aminolevulinic acid dehydratase
YP_3278	PF02357	Transcription termination factor nusG
YP_3279	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
YP_3280	PF00175	Oxidoreductase NAD-binding domain
YP_3280	PF00970	Oxidoreductase FAD-binding domain
YP_3281	PF00108	Thiolase, N-terminal domain
YP_3281	PF02803	Thiolase, C-terminal domain
YP_3282	PF00378	Enoyl-CoA hydratase/isomerase family
YP_3282	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
YP_3282	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_3283	PF00557	Metallopeptidase family M24
YP_3284	PF01205	Uncharacterized protein family UPF0029
YP_3284	PF09186	Domain of unknown function (DUF1949)
YP_3285	PF02386	Cation transport protein
YP_3286	PF12724	Flavodoxin domain
YP_3288	PF01565	FAD binding domain
YP_3288	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
YP_3289	PF02237	Biotin protein ligase C terminal domain
YP_3289	PF03099	Biotin/lipoate A/B protein ligase family
YP_3289	PF08279	HTH domain
YP_3290	PF00485	Phosphoribulokinase / Uridine kinase family
YP_3291	PF13673	Acetyltransferase (GNAT) domain
YP_3293	PF00665	Integrase core domain
YP_3293	PF02796	Helix-turn-helix domain of resolvase
YP_3294	PF01695	IstB-like ATP binding protein
YP_3297	PF06092	YP_3297
YP_3299	PF01266	FAD dependent oxidoreductase
YP_3299	PF16901	YP_3299
YP_3300	PF00343	Carbohydrate phosphorylase
YP_3301	PF00534	Glycosyl transferases group 1
YP_3301	PF08323	Starch synthase catalytic domain
YP_3302	PF00483	Nucleotidyl transferase
YP_3303	PF00128	Alpha amylase, catalytic domain
YP_3303	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
YP_3304	PF00128	Alpha amylase, catalytic domain
YP_3304	PF02806	Alpha amylase, C-terminal all-beta domain
YP_3304	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
YP_3305	PF06580	YP_3305
YP_3305	PF07694	5TMR of 5TMR-LYT
YP_3306	PF01476	LysM domain
YP_3306	PF02369	Bacterial Ig-like domain (group 1)
YP_3306	PF11924	Protein of unknown function (DUF3442)
YP_3311	PF01118	Semialdehyde dehydrogenase, NAD binding domain
YP_3311	PF02774	Semialdehyde dehydrogenase, dimerisation domain
YP_3312	PF01914	YP_3312
YP_3315	PF01202	Shikimate kinase
YP_3316	PF02447	YP_3316
YP_3317	PF00356	Bacterial regulatory proteins, lacI family
YP_3317	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YP_3318	PF02678	Pirin
YP_3321	PF00072	Response regulator receiver domain
YP_3321	PF00486	Transcriptional regulatory protein, C terminal
YP_3322	PF00294	pfkB family carbohydrate kinase
YP_3323	PF01116	Fructose-bisphosphate aldolase class-II
YP_3324	PF07385	Protein of unknown function (DUF1498)
YP_3325	PF13407	Periplasmic binding protein domain
YP_3326	PF02653	YP_3326
YP_3327	PF00005	ABC transporter
YP_3328	PF00072	Response regulator receiver domain
YP_3328	PF00512	His Kinase A (phospho-acceptor) domain
YP_3328	PF00672	HAMP domain
YP_3328	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_3328	PF12860	YP_3328
YP_3329	PF03486	HI0933-like protein
YP_3330	PF01384	YP_3330
YP_3331	PF01797	Transposase IS200 like
YP_3332	PF10625	YP_3332
YP_3333	PF00582	Universal stress protein family
YP_3334	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
YP_3334	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YP_3335	PF08548	Peptidase M10 serralysin C terminal
YP_3336	PF04445	Putative SAM-dependent methyltransferase
YP_3337	PF01432	Peptidase family M3
YP_3339	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
YP_3340	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YP_3340	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YP_3341	PF05651	YP_3341
YP_3341	PF13556	PucR C-terminal helix-turn-helix domain
YP_3342	PF02447	YP_3342
YP_3343	PF02595	Glycerate kinase family
YP_3344	PF06092	YP_3344
YP_3345	PF06092	YP_3345
YP_3346	PF11692	YP_3346
YP_3347	PF03212	Pertactin
YP_3347	PF03797	Autotransporter beta-domain
YP_3348	PF03631	YP_3348
YP_3349	PF02611	CDP-diacylglycerol pyrophosphatase
YP_3350	PF05170	YP_3350
YP_3351	PF00563	EAL domain
YP_3352	PF01361	Tautomerase enzyme
YP_3353	PF00294	pfkB family carbohydrate kinase
YP_3354	PF00675	Insulinase (Peptidase family M16)
YP_3354	PF05193	Peptidase M16 inactive domain
YP_3355	PF00375	Sodium:dicarboxylate symporter family
YP_3356	PF00754	F5/8 type C domain
YP_3357	PF06917	Periplasmic pectate lyase
YP_3358	PF06178	Oligogalacturonate-specific porin protein (KdgM)
YP_3359	PF00563	EAL domain
YP_3359	PF00990	GGDEF domain
YP_3359	PF17154	YP_3359
YP_3361	PF00005	ABC transporter
YP_3361	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YP_3362	PF00005	ABC transporter
YP_3362	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YP_3363	PF00528	Binding-protein-dependent transport system inner membrane component
YP_3363	PF12911	YP_3363
YP_3364	PF00528	Binding-protein-dependent transport system inner membrane component
YP_3365	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YP_3367	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YP_3367	PF08479	POTRA domain, ShlB-type
YP_3367	PF17287	YP_3367
YP_3368	PF05860	haemagglutination activity domain
YP_3369	PF07690	Major Facilitator Superfamily
YP_3370	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_3370	PF05231	YP_3370
YP_3370	PF07730	Histidine kinase
YP_3371	PF00072	Response regulator receiver domain
YP_3371	PF00196	Bacterial regulatory proteins, luxR family
YP_3372	PF00884	Sulfatase
YP_3372	PF08019	YP_3372
YP_3374	PF12146	Putative lysophospholipase
YP_3377	PF01695	IstB-like ATP binding protein
YP_3378	PF00665	Integrase core domain
YP_3378	PF02796	Helix-turn-helix domain of resolvase
YP_3379	PF00221	Aromatic amino acid lyase
YP_3380	PF01175	Urocanase
YP_3380	PF17391	YP_3380
YP_3380	PF17392	YP_3380
YP_3381	PF00291	Pyridoxal-phosphate dependent enzyme
YP_3382	PF00156	Phosphoribosyl transferase domain
YP_3383	PF00892	EamA-like transporter family
YP_3384	PF13535	ATP-grasp domain
YP_3385	PF01497	Periplasmic binding protein
YP_3386	PF01032	FecCD transport family
YP_3387	PF01032	FecCD transport family
YP_3388	PF00005	ABC transporter
YP_3391	PF01381	Helix-turn-helix
YP_3393	PF04606	YP_3393
YP_3395	PF00589	Phage integrase family
YP_3395	PF13356	Domain of unknown function (DUF4102)
YP_3396	PF12833	Helix-turn-helix domain
YP_3396	PF13377	Periplasmic binding protein-like domain
YP_3397	PF02653	YP_3397
YP_3398	PF00005	ABC transporter
YP_3399	PF13407	Periplasmic binding protein domain
YP_3401	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YP_3401	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YP_3402	PF00419	Fimbrial protein
YP_3403	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YP_3403	PF02753	Pili assembly chaperone PapD, C-terminal domain
YP_3404	PF00577	Outer membrane usher protein
YP_3404	PF13953	PapC C-terminal domain
YP_3405	PF00577	Outer membrane usher protein
YP_3405	PF13954	PapC N-terminal domain
YP_3406	PF00419	Fimbrial protein
YP_3407	PF01757	YP_3407
YP_3408	PF13518	Helix-turn-helix domain
YP_3409	PF00665	Integrase core domain
YP_3409	PF13276	YP_3409
YP_3410	PF00563	EAL domain
YP_3410	PF00989	PAS fold
YP_3410	PF00990	GGDEF domain
YP_3410	PF05228	YP_3410
YP_3411	PF13533	Biotin-lipoyl like
YP_3412	PF00873	AcrB/AcrD/AcrF family
YP_3413	PF07906	YP_3413
YP_3415	PF13018	YP_3415
YP_3416	PF12468	Type III secretion system leucine rich repeat protein
YP_3416	PF14496	C-terminal novel E3 ligase, LRR-interacting
YP_3417	PF12468	Type III secretion system leucine rich repeat protein
YP_3418	PF12468	Type III secretion system leucine rich repeat protein
YP_3418	PF14496	C-terminal novel E3 ligase, LRR-interacting
YP_3420	PF03806	YP_3420
YP_3421	PF01546	Peptidase family M20/M25/M40
YP_3421	PF07687	Peptidase dimerisation domain
YP_3422	PF00593	TonB dependent receptor
YP_3422	PF07715	TonB-dependent Receptor Plug Domain
YP_3423	PF00109	Beta-ketoacyl synthase, N-terminal domain
YP_3423	PF00501	AMP-binding enzyme
YP_3423	PF00550	Phosphopantetheine attachment site
YP_3423	PF00668	Condensation domain
YP_3423	PF02801	Beta-ketoacyl synthase, C-terminal domain
YP_3424	PF00501	AMP-binding enzyme
YP_3424	PF00550	Phosphopantetheine attachment site
YP_3425	PF00501	AMP-binding enzyme
YP_3425	PF00550	Phosphopantetheine attachment site
YP_3425	PF00668	Condensation domain
YP_3425	PF00975	Thioesterase domain
YP_3425	PF08242	Methyltransferase domain
YP_3426	PF01370	NAD dependent epimerase/dehydratase family
YP_3427	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YP_3428	PF00975	Thioesterase domain
YP_3429	PF07690	Major Facilitator Superfamily
YP_3430	PF00005	ABC transporter
YP_3430	PF00664	ABC transporter transmembrane region
YP_3431	PF00005	ABC transporter
YP_3431	PF00664	ABC transporter transmembrane region
YP_3434	PF02447	YP_3434
YP_3436	PF03797	Autotransporter beta-domain
YP_3437	PF05954	Phage late control gene D protein (GPD)
YP_3437	PF06715	Gp5 C-terminal repeat (3 copies)
YP_3439	PF03527	YP_3439
YP_3439	PF05593	YP_3439
YP_3442	PF00939	Sodium:sulfate symporter transmembrane region
YP_3443	PF00356	Bacterial regulatory proteins, lacI family
YP_3443	PF13377	Periplasmic binding protein-like domain
YP_3444	PF00150	Cellulase (glycosyl hydrolase family 5)
YP_3445	PF13347	MFS/sugar transport protein
YP_3446	PF00593	TonB dependent receptor
YP_3446	PF07715	TonB-dependent Receptor Plug Domain
YP_3447	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
YP_3448	PF04183	IucA / IucC family
YP_3448	PF06276	Ferric iron reductase FhuF-like transporter
YP_3449	PF13523	Acetyltransferase (GNAT) domain
YP_3451	PF07690	Major Facilitator Superfamily
YP_3452	PF00775	Dioxygenase
YP_3453	PF10503	Esterase PHB depolymerase
YP_3454	PF00196	Bacterial regulatory proteins, luxR family
YP_3454	PF03472	Autoinducer binding domain
YP_3455	PF00765	Autoinducer synthetase
YP_3456	PF02517	CAAX protease self-immunity
YP_3458	PF03811	YP_3458
YP_3458	PF12759	YP_3458
YP_3461	PF05591	YP_3461
YP_3462	PF05943	YP_3462
YP_3463	PF05936	YP_3463
YP_3464	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YP_3465	PF00691	OmpA family
YP_3466	PF05638	Protein of unknown function (DUF796)
YP_3467	PF00004	ATPase family associated with various cellular activities (AAA)
YP_3467	PF07724	AAA domain (Cdc48 subfamily)
YP_3467	PF10431	C-terminal, D2-small domain, of ClpB protein
YP_3468	PF05954	Phage late control gene D protein (GPD)
YP_3468	PF10106	YP_3468
YP_3468	PF13296	YP_3468
YP_3472	PF03811	YP_3472
YP_3472	PF12759	YP_3472
YP_3474	PF10106	YP_3474
YP_3475	PF01551	Peptidase family M23
YP_3477	PF03811	YP_3477
YP_3477	PF12759	YP_3477
YP_3478	PF03400	YP_3478
YP_3481	PF01276	Orn/Lys/Arg decarboxylase, major domain
YP_3481	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
YP_3481	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
YP_3482	PF13407	Periplasmic binding protein domain
YP_3483	PF00005	ABC transporter
YP_3484	PF02653	YP_3484
YP_3485	PF00593	TonB dependent receptor
YP_3485	PF07715	TonB-dependent Receptor Plug Domain
YP_3486	PF01497	Periplasmic binding protein
YP_3487	PF01464	Transglycosylase SLT domain
YP_3487	PF11873	Domain of unknown function (DUF3393)
YP_3488	PF04362	Bacterial Fe(2+) trafficking
YP_3489	PF00633	Helix-hairpin-helix motif
YP_3489	PF00730	HhH-GPD superfamily base excision DNA repair protein
YP_3489	PF10576	Iron-sulfur binding domain of endonuclease III
YP_3489	PF14815	NUDIX domain
YP_3490	PF02390	Putative methyltransferase
YP_3491	PF04320	YP_3491
YP_3492	PF04960	Glutaminase
YP_3494	PF11713	Peptidase C80 family
YP_3495	PF00872	YP_3495
YP_3496	PF04055	Radical SAM superfamily
YP_3496	PF06969	HemN C-terminal domain
YP_3497	PF01725	Ham1 family
YP_3498	PF02594	Uncharacterised ACR, YggU family COG1872
YP_3499	PF02325	YP_3499
YP_3500	PF03807	NADP oxidoreductase coenzyme F420-dependent
YP_3500	PF14748	Pyrroline-5-carboxylate reductase dimerisation
YP_3501	PF01168	Alanine racemase, N-terminal domain
YP_3502	PF00437	Type II/IV secretion system protein
YP_3503	PF04371	Porphyromonas-type peptidyl-arginine deiminase
YP_3504	PF00795	Carbon-nitrogen hydrolase
YP_3505	PF03652	Uncharacterised protein family (UPF0081)
YP_3506	PF02622	Uncharacterized ACR, COG1678
YP_3507	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
YP_3507	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
YP_3508	PF04452	RNA methyltransferase
YP_3510	PF04231	Endonuclease I
YP_3511	PF10263	YP_3511
YP_3511	PF17283	YP_3511
YP_3512	PF00438	S-adenosylmethionine synthetase, N-terminal domain
YP_3512	PF02772	S-adenosylmethionine synthetase, central domain
YP_3512	PF02773	S-adenosylmethionine synthetase, C-terminal domain
YP_3513	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
YP_3514	PF00355	Rieske [2Fe-2S] domain
YP_3515	PF01435	Peptidase family M48
YP_3516	PF00456	Transketolase, thiamine diphosphate binding domain
YP_3516	PF02779	Transketolase, pyrimidine binding domain
YP_3516	PF02780	Transketolase, C-terminal domain
YP_3517	PF01797	Transposase IS200 like
YP_3518	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
YP_3518	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
YP_3519	PF00162	Phosphoglycerate kinase
YP_3520	PF01116	Fructose-bisphosphate aldolase class-II
YP_3521	PF00924	Mechanosensitive ion channel
YP_3521	PF05552	Conserved TM helix
YP_3523	PF01695	IstB-like ATP binding protein
YP_3524	PF00665	Integrase core domain
YP_3524	PF02796	Helix-turn-helix domain of resolvase
YP_3525	PF01797	Transposase IS200 like
YP_3526	PF00884	Sulfatase
YP_3527	PF00455	YP_3527
YP_3527	PF08220	DeoR-like helix-turn-helix domain
YP_3528	PF08013	Tagatose 6 phosphate kinase
YP_3529	PF01380	SIS domain
YP_3530	PF03830	PTS system sorbose subfamily IIB component
YP_3531	PF03609	YP_3531
YP_3532	PF03613	YP_3532
YP_3533	PF03610	PTS system fructose IIA component
YP_3534	PF01979	Amidohydrolase family
YP_3535	PF13561	Enoyl-(Acyl carrier protein) reductase
YP_3536	PF07470	Glycosyl Hydrolase Family 88
YP_3537	PF04055	Radical SAM superfamily
YP_3537	PF13186	Iron-sulfur cluster-binding domain
YP_3538	PF00884	Sulfatase
YP_3539	PF10022	YP_3539
YP_3540	PF01116	Fructose-bisphosphate aldolase class-II
YP_3541	PF01965	DJ-1/PfpI family
YP_3543	PF00356	Bacterial regulatory proteins, lacI family
YP_3543	PF13377	Periplasmic binding protein-like domain
YP_3544	PF07690	Major Facilitator Superfamily
YP_3545	PF01055	Glycosyl hydrolases family 31
YP_3545	PF13802	Galactose mutarotase-like
YP_3545	PF17137	YP_3545
YP_3546	PF00356	Bacterial regulatory proteins, lacI family
YP_3546	PF13377	Periplasmic binding protein-like domain
YP_3547	PF02264	LamB porin
YP_3549	PF02449	Beta-galactosidase
YP_3549	PF08532	Beta-galactosidase trimerisation domain
YP_3549	PF08533	Beta-galactosidase C-terminal domain
YP_3550	PF07745	Glycosyl hydrolase family 53
YP_3551	PF00528	Binding-protein-dependent transport system inner membrane component
YP_3552	PF00528	Binding-protein-dependent transport system inner membrane component
YP_3553	PF13416	Bacterial extracellular solute-binding protein
YP_3554	PF00005	ABC transporter
YP_3554	PF08402	TOBE domain
YP_3555	PF00005	ABC transporter
YP_3556	PF02653	YP_3556
YP_3557	PF13407	Periplasmic binding protein domain
YP_3559	PF05708	Orthopoxvirus protein of unknown function (DUF830)
YP_3561	PF03551	Transcriptional regulator PadR-like family
YP_3562	PF12977	Domain of Unknown Function with PDB structure (DUF3861)
YP_3563	PF05488	PAAR motif
YP_3568	PF09204	Bacterial self-protective colicin-like immunity
YP_3570	PF14206	YP_3570
YP_3571	PF05488	PAAR motif
YP_3571	PF06958	S-type Pyocin
YP_3572	PF02661	Fic/DOC family
YP_3576	PF05930	Prophage CP4-57 regulatory protein (AlpA)
YP_3578	PF03288	Poxvirus D5 protein-like
YP_3578	PF08273	Zinc-binding domain of primase-helicase
YP_3578	PF08706	YP_3578
YP_3578	PF13362	Toprim domain
YP_3579	PF15731	YP_3579
YP_3580	PF15723	YP_3580
YP_3581	PF01381	Helix-turn-helix
YP_3582	PF05016	Plasmid stabilisation system protein
YP_3583	PF00589	Phage integrase family
YP_3583	PF13356	Domain of unknown function (DUF4102)
YP_3584	PF00152	tRNA synthetases class II (D, K and N)
YP_3584	PF01336	OB-fold nucleic acid binding domain
YP_3585	PF00472	RF-1 domain
YP_3585	PF03462	PCRF domain
YP_3586	PF01368	DHH family
YP_3586	PF02272	DHHA1 domain
YP_3587	PF10411	Disulfide bond isomerase protein N-terminus
YP_3587	PF13098	Thioredoxin-like domain
YP_3588	PF00589	Phage integrase family
YP_3588	PF02899	Phage integrase, N-terminal SAM-like domain
YP_3589	PF00258	Flavodoxin
YP_3590	PF06123	YP_3590
YP_3591	PF00512	His Kinase A (phospho-acceptor) domain
YP_3591	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_3591	PF14827	Sensory domain of two-component sensor kinase
YP_3592	PF00072	Response regulator receiver domain
YP_3592	PF00486	Transcriptional regulatory protein, C terminal
YP_3593	PF07254	YP_3593
YP_3594	PF03937	Flavinator of succinate dehydrogenase
YP_3595	PF01571	Aminomethyltransferase folate-binding domain
YP_3596	PF09933	YP_3596
YP_3597	PF03006	YP_3597
YP_3601	PF13924	YP_3601
YP_3602	PF02347	Glycine cleavage system P-protein
YP_3603	PF01597	Glycine cleavage H-protein
YP_3604	PF01571	Aminomethyltransferase folate-binding domain
YP_3604	PF08669	Glycine cleavage T-protein C-terminal barrel domain
YP_3605	PF01494	FAD binding domain
YP_3606	PF01494	FAD binding domain
YP_3607	PF00557	Metallopeptidase family M24
YP_3607	PF05195	Aminopeptidase P, N-terminal domain
YP_3608	PF03695	Uncharacterised protein family (UPF0149)
YP_3609	PF05164	Cell division protein ZapA
YP_3610	PF01812	5-formyltetrahydrofolate cyclo-ligase family
YP_3611	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_3611	PF01842	ACT domain
YP_3611	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YP_3612	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
YP_3613	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_3613	PF03466	LysR substrate binding domain
YP_3614	PF04402	Protein of unknown function (DUF541)
YP_3616	PF00665	Integrase core domain
YP_3616	PF02796	Helix-turn-helix domain of resolvase
YP_3617	PF01695	IstB-like ATP binding protein
YP_3619	PF00293	NUDIX domain
YP_3620	PF01043	SecA preprotein cross-linking domain
YP_3620	PF02810	SEC-C motif
YP_3620	PF07516	SecA Wing and Scaffold domain
YP_3620	PF07517	SecA DEAD-like domain
YP_3621	PF06558	YP_3621
YP_3622	PF05258	YP_3622
YP_3623	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
YP_3624	PF00091	Tubulin/FtsZ family, GTPase domain
YP_3624	PF12327	FtsZ family, C-terminal domain
YP_3625	PF02491	SHS2 domain inserted in FTSA
YP_3625	PF14450	Cell division protein FtsA
YP_3626	PF03799	Cell division protein FtsQ
YP_3626	PF08478	POTRA domain, FtsQ-type
YP_3627	PF01820	D-ala D-ala ligase N-terminus
YP_3627	PF07478	D-ala D-ala ligase C-terminus
YP_3628	PF01225	Mur ligase family, catalytic domain
YP_3628	PF02875	Mur ligase family, glutamate ligase domain
YP_3628	PF08245	Mur ligase middle domain
YP_3629	PF03033	Glycosyltransferase family 28 N-terminal domain
YP_3629	PF04101	Glycosyltransferase family 28 C-terminal domain
YP_3630	PF01098	YP_3630
YP_3631	PF02875	Mur ligase family, glutamate ligase domain
YP_3631	PF08245	Mur ligase middle domain
YP_3632	PF00953	Glycosyl transferase family 4
YP_3632	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
YP_3633	PF01225	Mur ligase family, catalytic domain
YP_3633	PF02875	Mur ligase family, glutamate ligase domain
YP_3633	PF08245	Mur ligase middle domain
YP_3634	PF01225	Mur ligase family, catalytic domain
YP_3634	PF02875	Mur ligase family, glutamate ligase domain
YP_3634	PF08245	Mur ligase middle domain
YP_3635	PF00905	Penicillin binding protein transpeptidase domain
YP_3635	PF03717	Penicillin-binding Protein dimerisation domain
YP_3636	PF04999	YP_3636
YP_3637	PF01795	MraW methylase family
YP_3638	PF02381	MraZ protein
YP_3639	PF06610	YP_3639
YP_3640	PF00356	Bacterial regulatory proteins, lacI family
YP_3640	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YP_3641	PF01797	Transposase IS200 like
YP_3643	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_3643	PF03466	LysR substrate binding domain
YP_3645	PF00501	AMP-binding enzyme
YP_3646	PF00205	Thiamine pyrophosphate enzyme, central domain
YP_3646	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_3646	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YP_3647	PF01842	ACT domain
YP_3647	PF10369	Small subunit of acetolactate synthase
YP_3648	PF01797	Transposase IS200 like
YP_3649	PF00682	HMGL-like
YP_3649	PF08502	LeuA allosteric (dimerisation) domain
YP_3650	PF00180	Isocitrate/isopropylmalate dehydrogenase
YP_3651	PF00330	Aconitase family (aconitate hydratase)
YP_3652	PF00694	Aconitase C-terminal domain
YP_3653	PF07690	Major Facilitator Superfamily
YP_3655	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YP_3655	PF12793	YP_3655
YP_3657	PF13343	Bacterial extracellular solute-binding protein
YP_3658	PF00528	Binding-protein-dependent transport system inner membrane component
YP_3659	PF00005	ABC transporter
YP_3660	PF09335	YP_3660
YP_3661	PF00136	DNA polymerase family B
YP_3661	PF03104	DNA polymerase family B, exonuclease domain
YP_3662	PF00176	SNF2 family N-terminal domain
YP_3662	PF00271	Helicase conserved C-terminal domain
YP_3662	PF12137	RNA polymerase recycling family C-terminal
YP_3664	PF06744	YP_3664
YP_3664	PF06761	YP_3664
YP_3664	PF14331	YP_3664
YP_3665	PF00691	OmpA family
YP_3665	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YP_3666	PF05936	YP_3666
YP_3667	PF12790	Type VI secretion lipoprotein
YP_3668	PF13665	YP_3668
YP_3669	PF12059	YP_3669
YP_3670	PF00805	Pentapeptide repeats (8 copies)
YP_3670	PF13599	Pentapeptide repeats (9 copies)
YP_3671	PF09937	YP_3671
YP_3671	PF13599	Pentapeptide repeats (9 copies)
YP_3672	PF05954	Phage late control gene D protein (GPD)
YP_3673	PF00004	ATPase family associated with various cellular activities (AAA)
YP_3673	PF02861	Clp amino terminal domain
YP_3673	PF07724	AAA domain (Cdc48 subfamily)
YP_3674	PF06996	YP_3674
YP_3675	PF05947	YP_3675
YP_3676	PF04965	Gene 25-like lysozyme
YP_3677	PF05638	Protein of unknown function (DUF796)
YP_3678	PF05943	YP_3678
YP_3679	PF05591	YP_3679
YP_3680	PF06812	YP_3680
YP_3681	PF10074	YP_3681
YP_3682	PF00849	RNA pseudouridylate synthase
YP_3683	PF00226	DnaJ domain
YP_3683	PF05099	Tellurite resistance protein TerB
YP_3684	PF03968	OstA-like protein
YP_3684	PF04453	Organic solvent tolerance protein
YP_3685	PF00639	PPIC-type PPIASE domain
YP_3685	PF09312	SurA N-terminal domain
YP_3686	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
YP_3687	PF00398	Ribosomal RNA adenine dimethylase
YP_3688	PF04379	Protein of unknown function (DUF525)
YP_3689	PF00149	Calcineurin-like phosphoesterase
YP_3690	PF12582	YP_3690
YP_3691	PF12582	YP_3691
YP_3693	PF00186	Dihydrofolate reductase
YP_3694	PF12821	YP_3694
YP_3695	PF06738	YP_3695
YP_3696	PF01810	YP_3696
YP_3697	PF02142	MGS-like domain
YP_3697	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
YP_3697	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
YP_3698	PF00117	Glutamine amidotransferase class-I
YP_3698	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
YP_3699	PF01113	Dihydrodipicolinate reductase, N-terminus
YP_3699	PF05173	Dihydrodipicolinate reductase, C-terminus
YP_3700	PF01797	Transposase IS200 like
YP_3702	PF02401	LytB protein
YP_3703	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YP_3704	PF01252	YP_3704
YP_3705	PF00133	tRNA synthetases class I (I, L, M and V)
YP_3705	PF06827	Zinc finger found in FPG and IleRS
YP_3705	PF08264	Anticodon-binding domain of tRNA
YP_3706	PF01687	Riboflavin kinase
YP_3706	PF06574	FAD synthetase
YP_3708	PF01649	Ribosomal protein S20
YP_3709	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_3709	PF03466	LysR substrate binding domain
YP_3710	PF06965	Na+/H+ antiporter 1
YP_3711	PF00226	DnaJ domain
YP_3711	PF00684	DnaJ central domain
YP_3711	PF01556	DnaJ C terminal domain
YP_3712	PF00012	Hsp70 protein
YP_3713	PF01184	YP_3713
YP_3715	PF07690	Major Facilitator Superfamily
YP_3716	PF00994	Probable molybdopterin binding domain
YP_3718	PF00923	Transaldolase
YP_3720	PF03883	YP_3720
YP_3721	PF00291	Pyridoxal-phosphate dependent enzyme
YP_3721	PF14821	Threonine synthase N terminus
YP_3722	PF00288	GHMP kinases N terminal domain
YP_3722	PF08544	GHMP kinases C terminal
YP_3723	PF00696	Amino acid kinase family
YP_3723	PF00742	Homoserine dehydrogenase
YP_3723	PF01842	ACT domain
YP_3723	PF03447	Homoserine dehydrogenase, NAD binding domain
YP_3723	PF13840	ACT domain
YP_3725	PF00072	Response regulator receiver domain
YP_3725	PF00486	Transcriptional regulatory protein, C terminal
YP_3726	PF05981	YP_3726
YP_3727	PF06445	GyrI-like small molecule binding domain
YP_3727	PF12833	Helix-turn-helix domain
YP_3728	PF00300	Histidine phosphatase superfamily (branch 1)
YP_3729	PF01931	Protein of unknown function DUF84
YP_3730	PF01371	Trp repressor protein
YP_3731	PF01464	Transglycosylase SLT domain
YP_3731	PF14718	Soluble lytic murein transglycosylase L domain
YP_3732	PF00122	E1-E2 ATPase
YP_3732	PF00689	Cation transporting ATPase, C-terminus
YP_3732	PF00690	Cation transporter/ATPase, N-terminus
YP_3732	PF00702	haloacid dehalogenase-like hydrolase
YP_3733	PF13689	YP_3733
YP_3734	PF00990	GGDEF domain
YP_3734	PF17152	YP_3734
YP_3735	PF00691	OmpA family
YP_3736	PF00005	ABC transporter
YP_3736	PF12848	ABC transporter
YP_3737	PF02661	Fic/DOC family
YP_3737	PF13776	YP_3737
YP_3738	PF01381	Helix-turn-helix
YP_3738	PF13521	AAA domain
YP_3739	PF13481	AAA domain
YP_3739	PF13541	Subunit ChlI of Mg-chelatase
YP_3740	PF12710	haloacid dehalogenase-like hydrolase
YP_3741	PF10144	YP_3741
YP_3742	PF01048	Phosphorylase superfamily
YP_3743	PF01676	Metalloenzyme superfamily
YP_3744	PF00591	Glycosyl transferase family, a/b domain
YP_3744	PF02885	Glycosyl transferase family, helical bundle domain
YP_3744	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
YP_3745	PF01791	DeoC/LacD family aldolase
YP_3746	PF01773	Na+ dependent nucleoside transporter N-terminus
YP_3746	PF07662	Na+ dependent nucleoside transporter C-terminus
YP_3746	PF07670	Nucleoside recognition
YP_3747	PF01026	TatD related DNase
YP_3748	PF01734	Patatin-like phospholipase
YP_3750	PF04972	BON domain
YP_3751	PF00009	Elongation factor Tu GTP binding domain
YP_3751	PF03144	Elongation factor Tu domain 2
YP_3751	PF16658	YP_3751
YP_3752	PF00583	Acetyltransferase (GNAT) family
YP_3753	PF03603	DNA polymerase III psi subunit
YP_3754	PF05175	Methyltransferase small domain
YP_3754	PF08468	Methyltransferase small domain N-terminal
YP_3755	PF07256	YP_3755
YP_3756	PF00990	GGDEF domain
YP_3757	PF01095	Pectinesterase
YP_3760	PF00873	AcrB/AcrD/AcrF family
YP_3761	PF16576	YP_3761
YP_3762	PF06305	YP_3762
YP_3764	PF04932	YP_3764
YP_3765	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YP_3766	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YP_3766	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YP_3767	PF04198	Putative sugar-binding domain
YP_3769	PF00005	ABC transporter
YP_3770	PF02653	YP_3770
YP_3771	PF02653	YP_3771
YP_3772	PF13407	Periplasmic binding protein domain
YP_3773	PF01791	DeoC/LacD family aldolase
YP_3774	PF03992	Antibiotic biosynthesis monooxygenase
YP_3775	PF10696	YP_3775
YP_3776	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YP_3776	PF00381	PTS HPr component phosphorylation site
YP_3776	PF00391	PEP-utilising enzyme, mobile domain
YP_3776	PF02896	PEP-utilising enzyme, TIM barrel domain
YP_3776	PF05524	PEP-utilising enzyme, N-terminal
YP_3777	PF02378	Phosphotransferase system, EIIC
YP_3778	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YP_3779	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YP_3780	PF12833	Helix-turn-helix domain
YP_3782	PF05987	YP_3782
YP_3783	PF01435	Peptidase family M48
YP_3784	PF09983	YP_3784
YP_3784	PF11795	YP_3784
YP_3785	PF13558	Putative exonuclease SbcCD, C subunit
YP_3789	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_3790	PF01555	DNA methylase
YP_3793	PF10117	YP_3793
YP_3794	PF07728	AAA domain (dynein-related subfamily)
YP_3795	PF00665	Integrase core domain
YP_3795	PF02796	Helix-turn-helix domain of resolvase
YP_3796	PF01695	IstB-like ATP binding protein
YP_3798	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_3798	PF03466	LysR substrate binding domain
YP_3799	PF02678	Pirin
YP_3801	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
YP_3802	PF04348	LppC putative lipoprotein
YP_3803	PF02021	Uncharacterised protein family UPF0102
YP_3804	PF13580	SIS domain
YP_3805	PF04972	BON domain
YP_3806	PF00912	Transglycosylase
YP_3809	PF00072	Response regulator receiver domain
YP_3809	PF00512	His Kinase A (phospho-acceptor) domain
YP_3809	PF00989	PAS fold
YP_3809	PF01627	Hpt domain
YP_3809	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_3810	PF04055	Radical SAM superfamily
YP_3810	PF16199	YP_3810
YP_3811	PF00310	Glutamine amidotransferases class-II
YP_3811	PF01493	GXGXG motif
YP_3811	PF01645	Conserved region in glutamate synthase
YP_3811	PF04898	Glutamate synthase central domain
YP_3812	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YP_3812	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
YP_3814	PF04386	Stringent starvation protein B
YP_3815	PF00043	Glutathione S-transferase, C-terminal domain
YP_3815	PF02798	Glutathione S-transferase, N-terminal domain
YP_3817	PF00380	Ribosomal protein S9/S16
YP_3818	PF00572	Ribosomal protein L13
YP_3819	PF03969	AFG1-like ATPase
YP_3820	PF06295	YP_3820
YP_3821	PF00595	PDZ domain (Also known as DHR or GLGF)
YP_3821	PF13180	PDZ domain
YP_3821	PF13365	Trypsin-like peptidase domain
YP_3822	PF01797	Transposase IS200 like
YP_3823	PF13180	PDZ domain
YP_3823	PF13365	Trypsin-like peptidase domain
YP_3824	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
YP_3825	PF01722	BolA-like protein
YP_3826	PF13466	STAS domain
YP_3827	PF05494	Toluene tolerance, Ttg2
YP_3828	PF02470	YP_3828
YP_3829	PF02405	YP_3829
YP_3830	PF00005	ABC transporter
YP_3831	PF01699	Sodium/calcium exchanger protein
YP_3832	PF00571	CBS domain
YP_3832	PF01380	SIS domain
YP_3833	PF08282	haloacid dehalogenase-like hydrolase
YP_3834	PF06835	Lipopolysaccharide-assembly, LptC-related
YP_3835	PF03968	OstA-like protein
YP_3836	PF00005	ABC transporter
YP_3836	PF12399	Branched-chain amino acid ATP-binding cassette transporter
YP_3837	PF00309	YP_3837
YP_3837	PF04552	Sigma-54, DNA binding domain
YP_3837	PF04963	Sigma-54 factor, core binding domain
YP_3839	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YP_3840	PF03668	YP_3840
YP_3841	PF00381	PTS HPr component phosphorylation site
YP_3842	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
YP_3842	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
YP_3843	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
YP_3843	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
YP_3844	PF01042	Endoribonuclease L-PSP
YP_3845	PF16743	YP_3845
YP_3846	PF00356	Bacterial regulatory proteins, lacI family
YP_3846	PF13377	Periplasmic binding protein-like domain
YP_3847	PF00367	phosphotransferase system, EIIB
YP_3847	PF02378	Phosphotransferase system, EIIC
YP_3848	PF00128	Alpha amylase, catalytic domain
YP_3848	PF11941	Domain of unknown function (DUF3459)
YP_3849	PF01272	Transcription elongation factor, GreA/GreB, C-term
YP_3849	PF14760	Rnk N-terminus
YP_3850	PF07361	Cytochrome b562
YP_3852	PF01523	Putative modulator of DNA gyrase
YP_3853	PF04751	Protein of unknown function (DUF615)
YP_3854	PF01337	Barstar (barnase inhibitor)
YP_3855	PF00545	ribonuclease
YP_3857	PF04632	YP_3857
YP_3858	PF13437	HlyD family secretion protein
YP_3858	PF13533	Biotin-lipoyl like
YP_3859	PF07869	YP_3859
YP_3861	PF03466	LysR substrate binding domain
YP_3862	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YP_3864	PF03538	Salmonella virulence plasmid 28
YP_3866	PF03534	Salmonella virulence plasmid 65kDa B protein
YP_3866	PF12255	Insecticide toxin TcdB middle/C-terminal region
YP_3866	PF12256	Insecticide toxin TcdB middle/N-terminal region
YP_3867	PF16083	YP_3867
YP_3868	PF13539	D-alanyl-D-alanine carboxypeptidase
YP_3869	PF10828	YP_3869
YP_3871	PF00782	Dual specificity phosphatase, catalytic domain
YP_3874	PF01523	Putative modulator of DNA gyrase
YP_3875	PF00795	Carbon-nitrogen hydrolase
YP_3876	PF13116	YP_3876
YP_3876	PF13502	YP_3876
YP_3877	PF00575	S1 RNA binding domain
YP_3877	PF10150	Ribonuclease E/G family
YP_3878	PF02545	Maf-like protein
YP_3879	PF04093	YP_3879
YP_3880	PF04085	rod shape-determining protein MreC
YP_3881	PF06723	MreB/Mbl protein
YP_3882	PF00563	EAL domain
YP_3882	PF00990	GGDEF domain
YP_3882	PF17157	YP_3882
YP_3883	PF00107	Zinc-binding dehydrogenase
YP_3883	PF08240	Alcohol dehydrogenase GroES-like domain
YP_3884	PF00174	Oxidoreductase molybdopterin binding domain
YP_3885	PF01794	YP_3885
YP_3886	PF01220	Dehydroquinase class II
YP_3887	PF00364	Biotin-requiring enzyme
YP_3888	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
YP_3888	PF02785	Biotin carboxylase C-terminal domain
YP_3888	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
YP_3889	PF06196	YP_3889
YP_3890	PF00474	Sodium:solute symporter family
YP_3891	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
YP_3892	PF01207	Dihydrouridine synthase (Dus)
YP_3893	PF02954	Bacterial regulatory protein, Fis family
YP_3894	PF09204	Bacterial self-protective colicin-like immunity
YP_3896	PF00392	Bacterial regulatory proteins, gntR family
YP_3896	PF07729	FCD domain
YP_3897	PF07690	Major Facilitator Superfamily
YP_3898	PF02627	Carboxymuconolactone decarboxylase family
YP_3899	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
YP_3899	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
YP_3900	PF00753	Metallo-beta-lactamase superfamily
YP_3901	PF05433	YP_3901
YP_3903	PF00313	'Cold-shock' DNA-binding domain
YP_3904	PF00313	'Cold-shock' DNA-binding domain
YP_3905	PF01797	Transposase IS200 like
YP_3907	PF13449	Esterase-like activity of phytase
YP_3908	PF02798	Glutathione S-transferase, N-terminal domain
YP_3908	PF13410	Glutathione S-transferase, C-terminal domain
YP_3909	PF01380	SIS domain
YP_3910	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YP_3910	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YP_3911	PF02653	YP_3911
YP_3912	PF02653	YP_3912
YP_3913	PF00005	ABC transporter
YP_3914	PF13407	Periplasmic binding protein domain
YP_3915	PF03279	YP_3915
YP_3917	PF00999	Sodium/hydrogen exchanger family
YP_3918	PF00860	Permease family
YP_3919	PF04221	RelB antitoxin
YP_3920	PF00005	ABC transporter
YP_3921	PF00528	Binding-protein-dependent transport system inner membrane component
YP_3922	PF00296	Luciferase-like monooxygenase
YP_3924	PF03358	NADPH-dependent FMN reductase
YP_3925	PF01791	DeoC/LacD family aldolase
YP_3926	PF00294	pfkB family carbohydrate kinase
YP_3927	PF05025	RbsD / FucU transport protein family
YP_3928	PF02311	AraC-like ligand binding domain
YP_3928	PF12833	Helix-turn-helix domain
YP_3929	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YP_3930	PF01261	Xylose isomerase-like TIM barrel
YP_3931	PF00872	YP_3931
YP_3933	PF03527	YP_3933
YP_3933	PF05488	PAAR motif
YP_3933	PF05593	YP_3933
YP_3934	PF08786	Domain of unknown function (DUF1795)
YP_3935	PF05954	Phage late control gene D protein (GPD)
YP_3936	PF12486	YP_3936
YP_3937	PF01381	Helix-turn-helix
YP_3938	PF08845	YP_3938
YP_3939	PF08845	YP_3939
YP_3940	PF09346	SMI1 / KNR4 family (SUKH-1)
YP_3941	PF03527	YP_3941
YP_3941	PF14414	YP_3941
YP_3942	PF05488	PAAR motif
YP_3942	PF05593	YP_3942
YP_3943	PF08786	Domain of unknown function (DUF1795)
YP_3944	PF05954	Phage late control gene D protein (GPD)
YP_3945	PF12486	YP_3945
YP_3946	PF06812	YP_3946
YP_3947	PF06744	YP_3947
YP_3947	PF06761	YP_3947
YP_3947	PF14331	YP_3947
YP_3948	PF06812	YP_3948
YP_3948	PF16989	YP_3948
YP_3949	PF11319	YP_3949
YP_3950	PF02954	Bacterial regulatory protein, Fis family
YP_3951	PF00004	ATPase family associated with various cellular activities (AAA)
YP_3951	PF07724	AAA domain (Cdc48 subfamily)
YP_3951	PF10431	C-terminal, D2-small domain, of ClpB protein
YP_3952	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YP_3953	PF05936	YP_3953
YP_3954	PF12790	Type VI secretion lipoprotein
YP_3956	PF06996	YP_3956
YP_3958	PF13518	Helix-turn-helix domain
YP_3959	PF00665	Integrase core domain
YP_3959	PF13276	YP_3959
YP_3960	PF07690	Major Facilitator Superfamily
YP_3962	PF13988	YP_3962
YP_3966	PF03841	L-seryl-tRNA selenium transferase
YP_3966	PF12390	YP_3966
YP_3967	PF04216	Protein involved in formate dehydrogenase formation
YP_3968	PF01292	Prokaryotic cytochrome b561
YP_3969	PF09163	Formate dehydrogenase N, transmembrane
YP_3969	PF13247	4Fe-4S dicluster domain
YP_3971	PF02634	FdhD/NarQ family
YP_3972	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
YP_3972	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
YP_3973	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YP_3973	PF00672	HAMP domain
YP_3973	PF16591	YP_3973
YP_3975	PF10517	YP_3975
YP_3976	PF10928	Protein of unknown function (DUF2810)
YP_3977	PF05068	Mannitol repressor
YP_3978	PF01232	Mannitol dehydrogenase Rossmann domain
YP_3978	PF08125	Mannitol dehydrogenase C-terminal domain
YP_3979	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YP_3979	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YP_3979	PF02378	Phosphotransferase system, EIIC
YP_3980	PF11254	YP_3980
YP_3981	PF02092	YP_3981
YP_3981	PF05746	DALR anticodon binding domain
YP_3982	PF02091	Glycyl-tRNA synthetase alpha subunit
YP_3984	PF03352	Methyladenine glycosylase
YP_3985	PF13673	Acetyltransferase (GNAT) domain
YP_3986	PF00691	OmpA family
YP_3986	PF13488	YP_3986
YP_3988	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_3988	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YP_3989	PF00128	Alpha amylase, catalytic domain
YP_3991	PF00155	Aminotransferase class I and II
YP_3992	PF02080	TrkA-C domain
YP_3992	PF06826	YP_3992
YP_3993	PF00011	Hsp20/alpha crystallin family
YP_3994	PF00011	Hsp20/alpha crystallin family
YP_3995	PF07119	YP_3995
YP_3997	PF00291	Pyridoxal-phosphate dependent enzyme
YP_3998	PF02423	Ornithine cyclodeaminase/mu-crystallin family
YP_3999	PF13518	Helix-turn-helix domain
YP_4000	PF00665	Integrase core domain
YP_4000	PF13276	YP_4000
YP_4001	PF08282	haloacid dehalogenase-like hydrolase
YP_4002	PF00204	DNA gyrase B
YP_4002	PF00986	DNA gyrase B subunit, carboxyl terminus
YP_4002	PF01751	Toprim domain
YP_4002	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_4003	PF02463	RecF/RecN/SMC N terminal domain
YP_4004	PF00712	DNA polymerase III beta subunit, N-terminal domain
YP_4004	PF02767	DNA polymerase III beta subunit, central domain
YP_4004	PF02768	DNA polymerase III beta subunit, C-terminal domain
YP_4005	PF00308	Bacterial dnaA  protein
YP_4005	PF08299	Bacterial dnaA protein helix-turn-helix
YP_4005	PF11638	DnaA N-terminal domain
YP_4007	PF00468	Ribosomal protein L34
YP_4008	PF00825	Ribonuclease P
YP_4009	PF02096	60Kd inner membrane protein
YP_4009	PF14849	YidC periplasmic domain
YP_4010	PF01926	50S ribosome-binding GTPase
YP_4010	PF10396	GTP-binding protein TrmE N-terminus
YP_4010	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
YP_4011	PF07055	Enoyl reductase FAD binding domain
YP_4011	PF12241	Trans-2-enoyl-CoA reductase catalytic region
YP_4011	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
YP_4014	PF00860	Permease family
YP_4015	PF13419	Haloacid dehalogenase-like hydrolase
YP_4016	PF00528	Binding-protein-dependent transport system inner membrane component
YP_4017	PF00528	Binding-protein-dependent transport system inner membrane component
YP_4018	PF00497	Bacterial extracellular solute-binding proteins, family 3
YP_4019	PF04519	YP_4019
YP_4020	PF01895	PhoU domain
YP_4021	PF00005	ABC transporter
YP_4022	PF00528	Binding-protein-dependent transport system inner membrane component
YP_4023	PF00528	Binding-protein-dependent transport system inner membrane component
YP_4024	PF12849	PBP superfamily domain
YP_4025	PF01380	SIS domain
YP_4025	PF13522	Glutamine amidotransferase domain
YP_4026	PF00132	Bacterial transferase hexapeptide (six repeats)
YP_4026	PF12804	MobA-like NTP transferase domain
YP_4027	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
YP_4027	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
YP_4028	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YP_4028	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YP_4029	PF00231	ATP synthase
YP_4030	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YP_4030	PF00306	ATP synthase alpha/beta chain, C terminal domain
YP_4030	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YP_4031	PF00213	ATP synthase delta (OSCP) subunit
YP_4032	PF00430	ATP synthase B/B' CF(0)
YP_4033	PF00137	ATP synthase subunit C
YP_4034	PF00119	ATP synthase A chain
YP_4035	PF03899	YP_4035
YP_4036	PF02527	rRNA small subunit methyltransferase G
YP_4037	PF01134	Glucose inhibited division protein A
YP_4037	PF13932	GidA associated domain 3
YP_pCD01	PF00665	Integrase core domain
YP_pCD01	PF02796	Helix-turn-helix domain of resolvase
YP_pCD02	PF01695	IstB-like ATP binding protein
YP_pCD03	PF13276	YP_pCD03
YP_pCD04	PF00665	Integrase core domain
YP_pCD05	PF13091	PLD-like domain
YP_pCD06	PF10723	Replication regulatory protein RepB
YP_pCD07	PF08048	YP_pCD07
YP_pCD08	PF02387	YP_pCD08
YP_pCD13	PF00069	Protein kinase domain
YP_pCD13	PF09632	Rac1-binding domain
YP_pCD14	PF03421	YP_pCD14
YP_pCD15	PF13683	YP_pCD15
YP_pCD16	PF13817	YP_pCD16
YP_pCD17	PF00102	Protein-tyrosine phosphatase
YP_pCD17	PF09013	YopH, N-terminal
YP_pCD18	PF13683	YP_pCD18
YP_pCD20	PF01527	Transposase
YP_pCD21	PF09013	YopH, N-terminal
YP_pCD22	PF02108	YP_pCD22
YP_pCD23	PF06578	YP_pCD23
YP_pCD24	PF01514	Secretory protein of YscJ/FliF family
YP_pCD25	PF17001	YP_pCD25
YP_pCD26	PF09025	YopR Core
YP_pCD27	PF09477	Bacterial type II secretion system chaperone protein (type_III_yscG)
YP_pCD28	PF09392	Type III secretion needle MxiH like
YP_pCD29	PF08988	Protein of unknown function (DUF1895)
YP_pCD30	PF16693	YP_pCD30
YP_pCD30	PF16697	YP_pCD30
YP_pCD31	PF00263	YP_pCD31
YP_pCD31	PF03958	Bacterial type II/III secretion system short domain
YP_pCD32	PF05932	Tir chaperone protein (CesT) family
YP_pCD33	PF17551	YP_pCD33
YP_pCD34	PF02311	AraC-like ligand binding domain
YP_pCD34	PF12833	Helix-turn-helix domain
YP_pCD35	PF09619	Type III secretion system lipoprotein chaperone (YscW)
YP_pCD36	PF01312	FlhB HrpN YscU SpaS Family
YP_pCD37	PF01311	YP_pCD37
YP_pCD38	PF01313	YP_pCD38
YP_pCD39	PF00813	YP_pCD39
YP_pCD40	PF01052	Surface presentation of antigens (SPOA)
YP_pCD41	PF02120	Flagellar hook-length control protein FliK
YP_pCD42	PF07321	Type III secretion protein YscO
YP_pCD43	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YP_pCD43	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YP_pCD44	PF07201	HrpJ-like domain
YP_pCD45	PF09059	TyeA
YP_pCD47	PF09474	YP_pCD47
YP_pCD49	PF00771	FHIPEP family
YP_pCD50	PF09621	YP_pCD50
YP_pCD51	PF07216	YP_pCD51
YP_pCD52	PF04792	V antigen (LcrV) protein
YP_pCD53	PF07720	Tetratricopeptide repeat
YP_pCD54	PF04888	YP_pCD54
YP_pCD55	PF05844	YopD protein
YP_pCD57	PF13610	YP_pCD57
YP_pCD60	PF12468	Type III secretion system leucine rich repeat protein
YP_pCD66	PF05932	Tir chaperone protein (CesT) family
YP_pCD67	PF03543	Yersinia/Haemophilus virulence surface antigen
YP_pCD71	PF01527	Transposase
YP_pCD72	PF13276	YP_pCD72
YP_pCD74	PF00376	MerR family regulatory protein
YP_pCD74	PF13614	AAA domain
YP_pCD75	PF02195	ParB-like nuclease domain
YP_pCD78	PF03693	Uncharacterised protein family (UPF0156)
YP_pCD79	PF05016	Plasmid stabilisation system protein
YP_pCD81	PF03545	Yersinia virulence determinant (YopE)
YP_pCD81	PF09020	YopE, N terminal
YP_pCD82	PF05932	Tir chaperone protein (CesT) family
YP_pCD83	PF13683	YP_pCD83
YP_pCD85	PF00665	Integrase core domain
YP_pCD87	PF05932	Tir chaperone protein (CesT) family
YP_pCD88	PF13276	YP_pCD88
YP_pCD88	PF13683	YP_pCD88
YP_pCD89	PF01527	Transposase
YP_pCD92	PF00239	Resolvase, N terminal domain
YP_pCD92	PF02796	Helix-turn-helix domain of resolvase
YP_pCD93	PF01526	YP_pCD93
YP_pCD93	PF13700	YP_pCD93
YP_pCD98	PF01527	Transposase
YP_pCRY01	PF02387	YP_pCRY01
YP_pCRY03	PF12844	Helix-turn-helix domain
YP_pCRY04	PF02357	Transcription termination factor nusG
YP_pCRY07	PF01464	Transglycosylase SLT domain
YP_pCRY08	PF04956	YP_pCRY08
YP_pCRY09	PF03135	YP_pCRY09
YP_pCRY09	PF05101	YP_pCRY09
YP_pCRY10	PF07996	Type IV secretion system proteins
YP_pCRY12	PF04610	YP_pCRY12
YP_pCRY13	PF04335	VirB8 protein
YP_pCRY14	PF03524	Conjugal transfer protein
YP_pCRY15	PF03743	Bacterial conjugation TrbI-like protein
YP_pCRY16	PF00437	Type II/IV secretion system protein
YP_pCRY17	PF13117	YP_pCRY17
YP_pCRY22	PF01935	Domain of unknown function DUF87
YP_pCRY22	PF12696	TraM recognition site of TraD and TraG
YP_pCRY24	PF00565	Staphylococcal nuclease homologue
YP_pCRY27	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
YP_pCRY28	PF10263	YP_pCRY28
YP_pCRY29	PF01381	Helix-turn-helix
YP_pMT001	PF00665	Integrase core domain
YP_pMT001	PF02796	Helix-turn-helix domain of resolvase
YP_pMT002	PF01695	IstB-like ATP binding protein
YP_pMT003	PF02413	YP_pMT003
YP_pMT005	PF03335	Phage tail fibre repeat
YP_pMT005	PF03406	YP_pMT005
YP_pMT005	PF07484	Phage Tail Collar Domain
YP_pMT006	PF14301	YP_pMT006
YP_pMT007	PF09327	YP_pMT007
YP_pMT007	PF12421	YP_pMT007
YP_pMT007	PF13550	YP_pMT007
YP_pMT009	PF00877	NlpC/P60 family
YP_pMT009	PF14464	Prokaryotic homologs of the JAB domain
YP_pMT010	PF05100	YP_pMT010
YP_pMT011	PF05939	YP_pMT011
YP_pMT012	PF09718	YP_pMT012
YP_pMT015	PF02368	Bacterial Ig-like domain (group 2)
YP_pMT021	PF02368	Bacterial Ig-like domain (group 2)
YP_pMT025	PF03237	Terminase-like family
YP_pMT030	PF00005	ABC transporter
YP_pMT031	PF02195	ParB-like nuclease domain
YP_pMT032	PF02195	ParB-like nuclease domain
YP_pMT033	PF00270	DEAD/DEAH box helicase
YP_pMT033	PF00271	Helicase conserved C-terminal domain
YP_pMT036	PF03614	YP_pMT036
YP_pMT043	PF01797	Transposase IS200 like
YP_pMT045	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
YP_pMT046	PF00268	Ribonucleotide reductase, small chain
YP_pMT047	PF00317	Ribonucleotide reductase, all-alpha domain
YP_pMT047	PF02867	Ribonucleotide reductase, barrel domain
YP_pMT047	PF03477	ATP cone domain
YP_pMT050	PF13476	AAA domain
YP_pMT052	PF00149	Calcineurin-like phosphoesterase
YP_pMT054	PF09084	NMT1/THI5 like
YP_pMT057	PF01051	Initiator Replication protein
YP_pMT063	PF10765	Protein of unknown function (DUF2591)
YP_pMT064	PF01145	SPFH domain / Band 7 family
YP_pMT066	PF00154	recA bacterial DNA recombination protein
YP_pMT068	PF01367	5'-3' exonuclease, C-terminal SAM fold
YP_pMT068	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
YP_pMT074	PF00665	Integrase core domain
YP_pMT074	PF02796	Helix-turn-helix domain of resolvase
YP_pMT075	PF01695	IstB-like ATP binding protein
YP_pMT076	PF07728	AAA domain (dynein-related subfamily)
YP_pMT077	PF06213	YP_pMT077
YP_pMT077	PF11775	YP_pMT077
YP_pMT081	PF00589	Phage integrase family
YP_pMT082	PF09255	Caf1 Capsule antigen
YP_pMT083	PF00577	Outer membrane usher protein
YP_pMT083	PF13953	PapC C-terminal domain
YP_pMT083	PF13954	PapC N-terminal domain
YP_pMT084	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YP_pMT084	PF02753	Pili assembly chaperone PapD, C-terminal domain
YP_pMT085	PF06445	GyrI-like small molecule binding domain
YP_pMT085	PF12833	Helix-turn-helix domain
YP_pMT090	PF01068	ATP dependent DNA ligase domain
YP_pMT095	PF01695	IstB-like ATP binding protein
YP_pMT096	PF00665	Integrase core domain
YP_pMT096	PF02796	Helix-turn-helix domain of resolvase
YP_pMT097	PF02195	ParB-like nuclease domain
YP_pMT098	PF06006	Bacterial protein of unknown function (DUF905)
YP_pMT100	PF07275	Antirestriction protein (ArdA)
YP_pMT103	PF07128	YP_pMT103
YP_pMT105	PF01555	DNA methylase
YP_pMT109	PF13191	AAA ATPase domain
YP_pMT110	PF13438	YP_pMT110
YP_pMT112	PF02195	ParB-like nuclease domain
YP_pMT112	PF08775	ParB family
YP_pMT113	PF13614	AAA domain
YP_pMT114	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
YP_pMT115	PF05016	Plasmid stabilisation system protein
YP_pMT116	PF00239	Resolvase, N terminal domain
YP_pMT117	PF04754	YP_pMT117
YP_pMT120	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
YP_pMT125	PF01548	YP_pMT125
YP_pMT125	PF02371	YP_pMT125
YP_pMT126	PF00872	YP_pMT126
YP_pMT127	PF13643	YP_pMT127
YP_pPCP01	PF00665	Integrase core domain
YP_pPCP01	PF02796	Helix-turn-helix domain of resolvase
YP_pPCP02	PF01695	IstB-like ATP binding protein
YP_pPCP03	PF01815	Rop protein
YP_pPCP05	PF16765	YP_pPCP05
YP_pPCP06	PF16754	YP_pPCP06
YP_pPCP08	PF01278	Omptin family
YP_pPCP09	PF13744	Helix-turn-helix domain
YP_pPCP10	PF05973	YP_pPCP10