YP_0002 SM00344 helix_turn_helix ASNC type YP_0004 SM00327 von Willebrand factor (vWF) type A domain YP_0005 SM00382 ATPases associated with a variety of cellular activities YP_0011 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_0011 SM00895 YP_0011 YP_0018 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YP_0018 SM00474 3'-5' exonuclease YP_0018 SM00475 5'-3' exonuclease YP_0018 SM00482 DNA polymerase A domain YP_0019 SM01321 YP_0019 YP_0022 SM00729 Elongator protein 3, MiaB family, Radical SAM YP_0023 SM00382 ATPases associated with a variety of cellular activities YP_0023 SM00448 cheY-homologous receiver domain YP_0024 SM00091 PAS domain YP_0024 SM00387 Histidine kinase-like ATPases YP_0024 SM00388 His Kinase A (phosphoacceptor) domain YP_0025 SM01230 YP_0025 YP_0031 SM00382 ATPases associated with a variety of cellular activities YP_0037 SM00487 DEAD-like helicases superfamily YP_0037 SM00490 helicase superfamily c-terminal domain YP_0039 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YP_0039 SM00954 Region found in RelA / SpoT proteins YP_0040 SM01409 YP_0040 YP_0041 SM00072 Guanylate kinase homologues. YP_0042 SM00532 Ligase N family YP_0053 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain YP_0053 SM01232 YP_0053 YP_0061 SM00829 Enoylreductase YP_0065 SM00450 Rhodanese Homology Domain YP_0070 SM00971 Serine acetyltransferase, N-terminal YP_0072 SM00342 helix_turn_helix, arabinose operon control protein YP_0073 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_0073 SM00387 Histidine kinase-like ATPases YP_0073 SM00388 His Kinase A (phosphoacceptor) domain YP_0074 SM00448 cheY-homologous receiver domain YP_0074 SM00862 Transcriptional regulatory protein, C terminal YP_0085 SM00382 ATPases associated with a variety of cellular activities YP_0098 SM01321 YP_0098 YP_0100 SM00382 ATPases associated with a variety of cellular activities YP_0107 SM00382 ATPases associated with a variety of cellular activities YP_0107 SM01086 C-terminal, D2-small domain, of ClpB protein YP_0110 SM00354 helix_turn _helix lactose operon repressor YP_0111 SM00487 DEAD-like helicases superfamily YP_0111 SM00490 helicase superfamily c-terminal domain YP_0122 SM00420 helix_turn_helix, Deoxyribose operon repressor YP_0122 SM01134 YP_0122 YP_0124 SM00450 Rhodanese Homology Domain YP_0125 SM00421 helix_turn_helix, Lux Regulon YP_0134 SM00899 YP_0134 YP_0135 SM00316 Ribosomal protein S1-like RNA-binding domain YP_0135 SM00732 Likely ribonuclease with RNase H fold. YP_0137 SM00448 cheY-homologous receiver domain YP_0137 SM00862 Transcriptional regulatory protein, C terminal YP_0138 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_0138 SM00387 Histidine kinase-like ATPases YP_0138 SM00388 His Kinase A (phosphoacceptor) domain YP_0141 SM00363 S4 RNA-binding domain YP_0167 SM00354 helix_turn _helix lactose operon repressor YP_0174 SM00100 Cyclic nucleotide-monophosphate binding domain YP_0174 SM00419 helix_turn_helix, cAMP Regulatory protein YP_0181 SM00062 Bacterial periplasmic substrate-binding proteins YP_0182 SM00382 ATPases associated with a variety of cellular activities YP_0187 SM00382 ATPases associated with a variety of cellular activities YP_0201 SM00838 Elongation factor G C-terminus YP_0201 SM00889 Elongation factor G, domain IV YP_0203 SM01321 YP_0203 YP_0206 SM01403 YP_0206 YP_0210 SM01382 YP_0210 YP_0210 SM01383 YP_0210 YP_0213 SM00322 K homology RNA-binding domain YP_0217 SM01374 YP_0217 YP_0218 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YP_0231 SM00363 S4 RNA-binding domain YP_0231 SM01390 YP_0231 YP_0232 SM00662 RNA polymerases D YP_0234 SM00422 helix_turn_helix, mercury resistance YP_0249 SM00382 ATPases associated with a variety of cellular activities YP_0251 SM01321 YP_0251 YP_0256 SM01240 YP_0256 YP_0261 SM00644 YP_0261 YP_0264 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_0264 SM00895 YP_0264 YP_0269 SM01321 YP_0269 YP_0278 SM00947 Carbonic anhydrase YP_0279 SM00382 ATPases associated with a variety of cellular activities YP_0291 SM00487 DEAD-like helicases superfamily YP_0291 SM00490 helicase superfamily c-terminal domain YP_0291 SM00847 Helicase associated domain (HA2) Add an annotation YP_0293 SM00382 ATPases associated with a variety of cellular activities YP_0302 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YP_0303 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YP_0304 SM00073 Histidine Phosphotransfer domain YP_0304 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_0304 SM00387 Histidine kinase-like ATPases YP_0304 SM00388 His Kinase A (phosphoacceptor) domain YP_0304 SM00448 cheY-homologous receiver domain YP_0306 SM00954 Region found in RelA / SpoT proteins YP_0310 SM01192 YP_0310 YP_0310 SM01193 YP_0310 YP_0331 SM00257 Lysin motif YP_0333 SM00533 DNA-binding domain of DNA mismatch repair MUTS family YP_0333 SM00534 ATPase domain of DNA mismatch repair MUTS family YP_0335 SM00829 Enoylreductase YP_0338 SM01120 YP_0338 YP_0341 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor YP_0344 SM00062 Bacterial periplasmic substrate-binding proteins YP_0345 SM01235 YP_0345 YP_0357 SM00382 ATPases associated with a variety of cellular activities YP_0359 SM00420 helix_turn_helix, Deoxyribose operon repressor YP_0359 SM01134 YP_0359 YP_0360 SM01007 Class II Aldolase and Adducin N-terminal domain YP_0361 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YP_0370 SM00382 ATPases associated with a variety of cellular activities YP_0373 SM00861 Transketolase, pyrimidine binding domain YP_0379 SM00382 ATPases associated with a variety of cellular activities YP_0381 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YP_0387 SM01091 Transporter associated domain YP_0389 SM00382 ATPases associated with a variety of cellular activities YP_0389 SM00962 SRP54-type protein, GTPase domain YP_0389 SM00963 SRP54-type protein, helical bundle domain YP_0397 SM00448 cheY-homologous receiver domain YP_0397 SM00850 LytTr DNA-binding domain YP_0399 SM00830 Chorismate mutase type II YP_0400 SM00830 Chorismate mutase type II YP_0401 SM00382 ATPases associated with a variety of cellular activities YP_0408 SM00421 helix_turn_helix, Lux Regulon YP_0408 SM00448 cheY-homologous receiver domain YP_0409 SM00387 Histidine kinase-like ATPases YP_0409 SM00388 His Kinase A (phosphoacceptor) domain YP_0409 SM00448 cheY-homologous receiver domain YP_0413 SM00342 helix_turn_helix, arabinose operon control protein YP_0421 SM00382 ATPases associated with a variety of cellular activities YP_0434 SM00382 ATPases associated with a variety of cellular activities YP_0443 SM00382 ATPases associated with a variety of cellular activities YP_0464 SM00060 Fibronectin type 3 domain YP_0465 SM00869 Autotransporter beta-domain YP_0468 SM00563 Phosphate acyltransferases YP_0474 SM00829 Enoylreductase YP_0475 SM00382 ATPases associated with a variety of cellular activities YP_0476 SM01005 Alanine racemase, C-terminal domain YP_0483 SM01007 Class II Aldolase and Adducin N-terminal domain YP_0487 SM00342 helix_turn_helix, arabinose operon control protein YP_0488 SM00342 helix_turn_helix, arabinose operon control protein YP_0493 SM01276 YP_0493 YP_0498 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YP_0505 SM00883 Chaperonin 10 Kd subunit YP_0510 SM00841 Elongation factor P, C-terminal YP_0510 SM01185 YP_0510 YP_0521 SM00479 YP_0521 YP_0526 SM00257 Lysin motif YP_0526 SM00646 YP_0526 YP_0527 SM00853 MutL C terminal dimerisation domain YP_0527 SM01340 YP_0527 YP_0531 SM00244 prohibitin homologues YP_0532 SM00244 prohibitin homologues YP_0534 SM00788 Adenylosuccinate synthetase YP_0536 SM00316 Ribosomal protein S1-like RNA-binding domain YP_0536 SM00357 Cold shock protein domain YP_0536 SM00955 YP_0536 YP_0537 SM00967 RNA 2'-O ribose methyltransferase substrate binding YP_0547 SM00382 ATPases associated with a variety of cellular activities YP_0548 SM01321 YP_0548 YP_0557 SM00116 Domain in cystathionine beta-synthase and other proteins. YP_0557 SM01091 Transporter associated domain YP_0575 SM00387 Histidine kinase-like ATPases YP_0575 SM00388 His Kinase A (phosphoacceptor) domain YP_0576 SM00448 cheY-homologous receiver domain YP_0576 SM00862 Transcriptional regulatory protein, C terminal YP_0579 SM01103 YP_0579 YP_0581 SM00382 ATPases associated with a variety of cellular activities YP_0586 SM00316 Ribosomal protein S1-like RNA-binding domain YP_0586 SM00322 K homology RNA-binding domain YP_0590 SM01387 YP_0590 YP_0593 SM00316 Ribosomal protein S1-like RNA-binding domain YP_0593 SM00322 K homology RNA-binding domain YP_0594 SM00028 Tetratricopeptide repeats YP_0595 SM00487 DEAD-like helicases superfamily YP_0595 SM00490 helicase superfamily c-terminal domain YP_0598 SM00530 Helix-turn-helix XRE-family like proteins YP_0617 SM00859 Semialdehyde dehydrogenase, NAD binding domain YP_0618 SM00849 Metallo-beta-lactamase superfamily YP_0619 SM00072 Guanylate kinase homologues. YP_0621 SM00382 ATPases associated with a variety of cellular activities YP_0623 SM00382 ATPases associated with a variety of cellular activities YP_0628 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_0628 SM00866 YP_0628 YP_0632 SM00382 ATPases associated with a variety of cellular activities YP_0633 SM00382 ATPases associated with a variety of cellular activities YP_0649 SM00382 ATPases associated with a variety of cellular activities YP_0651 SM01321 YP_0651 YP_0654 SM00363 S4 RNA-binding domain YP_0656 SM00382 ATPases associated with a variety of cellular activities YP_0656 SM01086 C-terminal, D2-small domain, of ClpB protein YP_0658 SM00155 Phospholipase D. Active site motifs. YP_0659 SM00881 CoA binding domain YP_0660 SM01144 YP_0660 YP_0662 SM00967 RNA 2'-O ribose methyltransferase substrate binding YP_0666 SM00347 helix_turn_helix multiple antibiotic resistance protein YP_0676 SM00062 Bacterial periplasmic substrate-binding proteins YP_0679 SM00382 ATPases associated with a variety of cellular activities YP_0681 SM00382 ATPases associated with a variety of cellular activities YP_0685 SM00710 Parallel beta-helix repeats YP_0685 SM00912 haemagglutination activity domain YP_0695 SM00900 YP_0695 YP_0706 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins YP_0711 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YP_0727 SM00448 cheY-homologous receiver domain YP_0727 SM00862 Transcriptional regulatory protein, C terminal YP_0728 SM00091 PAS domain YP_0728 SM00387 Histidine kinase-like ATPases YP_0728 SM00388 His Kinase A (phosphoacceptor) domain YP_0732 SM00642 Alpha-amylase domain YP_0741 SM01323 YP_0741 YP_0744 SM01321 YP_0744 YP_0753 SM01321 YP_0753 YP_0754 SM00861 Transketolase, pyrimidine binding domain YP_0758 SM00981 YP_0758 YP_0775 SM00382 ATPases associated with a variety of cellular activities YP_0775 SM00994 ClpX C4-type zinc finger YP_0775 SM01086 C-terminal, D2-small domain, of ClpB protein YP_0776 SM00382 ATPases associated with a variety of cellular activities YP_0776 SM00464 Found in ATP-dependent protease La (LON) YP_0777 SM00411 bacterial (prokaryotic) histone like domain YP_0785 SM00344 helix_turn_helix ASNC type YP_0786 SM00382 ATPases associated with a variety of cellular activities YP_0787 SM00382 ATPases associated with a variety of cellular activities YP_0788 SM00938 Nitrogen regulatory protein P-II YP_0807 SM00382 ATPases associated with a variety of cellular activities YP_0809 SM00493 YP_0809 YP_0811 SM00387 Histidine kinase-like ATPases YP_0839 SM00422 helix_turn_helix, mercury resistance YP_0841 SM00244 prohibitin homologues YP_0843 SM00822 YP_0843 YP_0845 SM00382 ATPases associated with a variety of cellular activities YP_0848 SM01001 AIR carboxylase YP_0852 SM00840 YP_0852 YP_0853 SM01321 YP_0853 YP_0866 SM00563 Phosphate acyltransferases YP_0868 SM00195 Dual specificity phosphatase, catalytic domain YP_0868 SM00404 Protein tyrosine phosphatase, catalytic domain motif YP_0871 SM00382 ATPases associated with a variety of cellular activities YP_0878 SM01321 YP_0878 YP_0904 SM00420 helix_turn_helix, Deoxyribose operon repressor YP_0904 SM01134 YP_0904 YP_0905 SM01007 Class II Aldolase and Adducin N-terminal domain YP_0908 SM00530 Helix-turn-helix XRE-family like proteins YP_0911 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YP_0911 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_0919 SM00421 helix_turn_helix, Lux Regulon YP_0919 SM00448 cheY-homologous receiver domain YP_0920 SM00387 Histidine kinase-like ATPases YP_0920 SM00388 His Kinase A (phosphoacceptor) domain YP_0920 SM00448 cheY-homologous receiver domain YP_0921 SM00434 DNA Topoisomerase IV YP_0927 SM00852 Probable molybdopterin binding domain YP_0931 SM01060 YP_0931 YP_0932 SM00487 DEAD-like helicases superfamily YP_0932 SM00488 YP_0932 YP_0932 SM00491 YP_0932 YP_0939 SM00382 ATPases associated with a variety of cellular activities YP_0942 SM00450 Rhodanese Homology Domain YP_0945 SM00382 ATPases associated with a variety of cellular activities YP_0954 SM00382 ATPases associated with a variety of cellular activities YP_0958 SM00507 HNH nucleases YP_0959 SM01118 YP_0959 YP_0965 SM01321 YP_0965 YP_0973 SM00487 DEAD-like helicases superfamily YP_0973 SM00490 helicase superfamily c-terminal domain YP_0976 SM00382 ATPases associated with a variety of cellular activities YP_0983 SM00382 ATPases associated with a variety of cellular activities YP_0983 SM00448 cheY-homologous receiver domain YP_0984 SM00091 PAS domain YP_0984 SM00387 Histidine kinase-like ATPases YP_0984 SM00388 His Kinase A (phosphoacceptor) domain YP_0987 SM01321 YP_0987 YP_0995 SM01321 YP_0995 YP_1000 SM00729 Elongator protein 3, MiaB family, Radical SAM YP_1003 SM00487 DEAD-like helicases superfamily YP_1003 SM00490 helicase superfamily c-terminal domain YP_1005 SM00382 ATPases associated with a variety of cellular activities YP_1009 SM00729 Elongator protein 3, MiaB family, Radical SAM YP_1009 SM00876 Biotin and Thiamin Synthesis associated domain YP_1013 SM00382 ATPases associated with a variety of cellular activities YP_1018 SM00382 ATPases associated with a variety of cellular activities YP_1025 SM00855 Phosphoglycerate mutase family YP_1040 SM00881 CoA binding domain YP_1043 SM00861 Transketolase, pyrimidine binding domain YP_1056 SM01321 YP_1056 YP_1066 SM00778 Zinc-binding domain of primase-helicase YP_1073 SM00382 ATPases associated with a variety of cellular activities YP_1093 SM00729 Elongator protein 3, MiaB family, Radical SAM YP_1096 SM00116 Domain in cystathionine beta-synthase and other proteins. YP_1096 SM01091 Transporter associated domain YP_1098 SM00062 Bacterial periplasmic substrate-binding proteins YP_1101 SM00382 ATPases associated with a variety of cellular activities YP_1112 SM00936 Penicillin-binding protein 5, C-terminal domain YP_1115 SM00729 Elongator protein 3, MiaB family, Radical SAM YP_1120 SM00357 Cold shock protein domain YP_1122 SM00421 helix_turn_helix, Lux Regulon YP_1127 SM00382 ATPases associated with a variety of cellular activities YP_1133 SM00382 ATPases associated with a variety of cellular activities YP_1141 SM01359 YP_1141 YP_1141 SM01360 YP_1141 YP_1153 SM00869 Autotransporter beta-domain YP_1160 SM01217 YP_1160 YP_1166 SM00382 ATPases associated with a variety of cellular activities YP_1168 SM01321 YP_1168 YP_1174 SM00382 ATPases associated with a variety of cellular activities YP_1175 SM00981 YP_1175 YP_1184 SM00849 Metallo-beta-lactamase superfamily YP_1187 SM01321 YP_1187 YP_1195 SM00357 Cold shock protein domain YP_1196 SM01150 YP_1196 YP_1198 SM00382 ATPases associated with a variety of cellular activities YP_1199 SM00849 Metallo-beta-lactamase superfamily YP_1200 SM00411 bacterial (prokaryotic) histone like domain YP_1201 SM00316 Ribosomal protein S1-like RNA-binding domain YP_1207 SM00870 YP_1207 YP_1215 SM00382 ATPases associated with a variety of cellular activities YP_1217 SM00843 YP_1217 YP_1218 SM00344 helix_turn_helix ASNC type YP_1220 SM00382 ATPases associated with a variety of cellular activities YP_1221 SM00382 ATPases associated with a variety of cellular activities YP_1223 SM00316 Ribosomal protein S1-like RNA-binding domain YP_1224 SM01321 YP_1224 YP_1225 SM00382 ATPases associated with a variety of cellular activities YP_1225 SM01086 C-terminal, D2-small domain, of ClpB protein YP_1228 SM00357 Cold shock protein domain YP_1229 SM00382 ATPases associated with a variety of cellular activities YP_1243 SM00830 Chorismate mutase type II YP_1244 SM00382 ATPases associated with a variety of cellular activities YP_1245 SM00062 Bacterial periplasmic substrate-binding proteins YP_1245 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YP_1251 SM00382 ATPases associated with a variety of cellular activities YP_1254 SM00244 prohibitin homologues YP_1256 SM00062 Bacterial periplasmic substrate-binding proteins YP_1256 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YP_1261 SM00382 ATPases associated with a variety of cellular activities YP_1268 SM00014 Acid phosphatase homologues YP_1269 SM01133 YP_1269 YP_1270 SM01134 YP_1270 YP_1272 SM00936 Penicillin-binding protein 5, C-terminal domain YP_1274 SM00382 ATPases associated with a variety of cellular activities YP_1274 SM00930 YP_1274 YP_1280 SM00382 ATPases associated with a variety of cellular activities YP_1286 SM00518 AP endonuclease family 2 YP_1291 SM00862 Transcriptional regulatory protein, C terminal YP_1297 SM00382 ATPases associated with a variety of cellular activities YP_1307 SM00841 Elongation factor P, C-terminal YP_1307 SM01185 YP_1307 YP_1310 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_1310 SM00895 YP_1310 YP_1312 SM00833 Cobalamin synthesis protein cobW C-terminal domain YP_1313 SM00014 Acid phosphatase homologues YP_1315 SM00052 Putative diguanylate phosphodiesterase YP_1319 SM00382 ATPases associated with a variety of cellular activities YP_1322 SM00363 S4 RNA-binding domain YP_1323 SM00487 DEAD-like helicases superfamily YP_1323 SM00490 helicase superfamily c-terminal domain YP_1325 SM01321 YP_1325 YP_1332 SM00851 MGS-like domain YP_1334 SM00881 CoA binding domain YP_1335 SM00992 Hemimethylated DNA-binding protein YccV like YP_1336 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YP_1342 SM00382 ATPases associated with a variety of cellular activities YP_1347 SM00825 Beta-ketoacyl synthase YP_1355 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YP_1362 SM00382 ATPases associated with a variety of cellular activities YP_1362 SM01086 C-terminal, D2-small domain, of ClpB protein YP_1381 SM00382 ATPases associated with a variety of cellular activities YP_1385 SM00852 Probable molybdopterin binding domain YP_1387 SM00382 ATPases associated with a variety of cellular activities YP_1392 SM00829 Enoylreductase YP_1398 SM00382 ATPases associated with a variety of cellular activities YP_1401 SM00919 Malic enzyme, NAD binding domain YP_1401 SM01274 YP_1401 YP_1410 SM01321 YP_1410 YP_1416 SM01091 Transporter associated domain YP_1420 SM01006 Siderophore biosynthesis protein domain YP_1422 SM00382 ATPases associated with a variety of cellular activities YP_1430 SM01350 YP_1430 YP_1455 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YP_1464 SM00421 helix_turn_helix, Lux Regulon YP_1464 SM00448 cheY-homologous receiver domain YP_1471 SM00354 helix_turn _helix lactose operon repressor YP_1474 SM00090 RIO-like kinase YP_1475 SM00382 ATPases associated with a variety of cellular activities YP_1478 SM00342 helix_turn_helix, arabinose operon control protein YP_1486 SM00357 Cold shock protein domain YP_1490 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YP_1490 SM00091 PAS domain YP_1490 SM00267 diguanylate cyclase YP_1491 SM00382 ATPases associated with a variety of cellular activities YP_1497 SM00382 ATPases associated with a variety of cellular activities YP_1504 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_1504 SM00866 YP_1504 YP_1527 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YP_1527 SM00465 GIY-YIG type nucleases (URI domain) YP_1528 SM00421 helix_turn_helix, Lux Regulon YP_1528 SM00448 cheY-homologous receiver domain YP_1545 SM00382 ATPases associated with a variety of cellular activities YP_1547 SM00062 Bacterial periplasmic substrate-binding proteins YP_1547 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YP_1556 SM00342 helix_turn_helix, arabinose operon control protein YP_1558 SM00478 endonuclease III YP_1565 SM00382 ATPases associated with a variety of cellular activities YP_1579 SM00382 ATPases associated with a variety of cellular activities YP_1582 SM01007 Class II Aldolase and Adducin N-terminal domain YP_1586 SM00047 Lysozyme subfamily 2 YP_1595 SM00858 YP_1595 YP_1599 SM01321 YP_1599 YP_1615 SM01022 YP_1615 YP_1617 SM00487 DEAD-like helicases superfamily YP_1617 SM00490 helicase superfamily c-terminal domain YP_1623 SM00903 Flavin reductase like domain YP_1632 SM00347 helix_turn_helix multiple antibiotic resistance protein YP_1633 SM01091 Transporter associated domain YP_1642 SM00382 ATPases associated with a variety of cellular activities YP_1653 SM00822 YP_1653 YP_1653 SM00823 Phosphopantetheine attachment site YP_1653 SM00824 Thioesterase YP_1653 SM00825 Beta-ketoacyl synthase YP_1653 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YP_1654 SM00823 Phosphopantetheine attachment site YP_1655 SM00342 helix_turn_helix, arabinose operon control protein YP_1656 SM00382 ATPases associated with a variety of cellular activities YP_1657 SM00382 ATPases associated with a variety of cellular activities YP_1666 SM00062 Bacterial periplasmic substrate-binding proteins YP_1666 SM00387 Histidine kinase-like ATPases YP_1666 SM00388 His Kinase A (phosphoacceptor) domain YP_1666 SM00448 cheY-homologous receiver domain YP_1667 SM00421 helix_turn_helix, Lux Regulon YP_1667 SM00448 cheY-homologous receiver domain YP_1680 SM00420 helix_turn_helix, Deoxyribose operon repressor YP_1680 SM01134 YP_1680 YP_1690 SM00382 ATPases associated with a variety of cellular activities YP_1704 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_1704 SM00387 Histidine kinase-like ATPases YP_1705 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_1716 SM00382 ATPases associated with a variety of cellular activities YP_1718 SM01022 YP_1718 YP_1720 SM00972 Spore Coat Protein U domain YP_1723 SM00972 Spore Coat Protein U domain YP_1724 SM00972 Spore Coat Protein U domain YP_1725 SM00972 Spore Coat Protein U domain YP_1729 SM00945 ProQ/FINO family YP_1730 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YP_1730 SM00245 tail specific protease YP_1739 SM00346 helix_turn_helix isocitrate lyase regulation YP_1740 SM00644 YP_1740 YP_1745 SM00382 ATPases associated with a variety of cellular activities YP_1754 SM00487 DEAD-like helicases superfamily YP_1754 SM00490 helicase superfamily c-terminal domain YP_1754 SM00982 YP_1754 YP_1754 SM01058 CarD-like/TRCF domain YP_1756 SM00382 ATPases associated with a variety of cellular activities YP_1762 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. YP_1763 SM00387 Histidine kinase-like ATPases YP_1763 SM00388 His Kinase A (phosphoacceptor) domain YP_1764 SM00448 cheY-homologous receiver domain YP_1764 SM00862 Transcriptional regulatory protein, C terminal YP_1771 SM01329 YP_1771 YP_1772 SM00354 helix_turn _helix lactose operon repressor YP_1774 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YP_1774 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YP_1781 SM00344 helix_turn_helix ASNC type YP_1784 SM00829 Enoylreductase YP_1785 SM01038 Beta galactosidase small chain YP_1786 SM00357 Cold shock protein domain YP_1791 SM00831 Cation transporter/ATPase, N-terminus YP_1796 SM00073 Histidine Phosphotransfer domain YP_1796 SM00260 Two component signalling adaptor domain YP_1796 SM00387 Histidine kinase-like ATPases YP_1796 SM01231 YP_1796 YP_1797 SM00260 Two component signalling adaptor domain YP_1803 SM00869 Autotransporter beta-domain YP_1806 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YP_1806 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_1806 SM00319 Homologues of the ligand binding domain of Tar YP_1807 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YP_1807 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_1807 SM00319 Homologues of the ligand binding domain of Tar YP_1808 SM00138 Methyltransferase, chemotaxis proteins YP_1809 SM00448 cheY-homologous receiver domain YP_1810 SM00448 cheY-homologous receiver domain YP_1812 SM00644 YP_1812 YP_1821 SM00382 ATPases associated with a variety of cellular activities YP_1836 SM00671 Sel1-like repeats. YP_1837 SM00671 Sel1-like repeats. YP_1847 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_1847 SM00387 Histidine kinase-like ATPases YP_1847 SM00388 His Kinase A (phosphoacceptor) domain YP_1848 SM00448 cheY-homologous receiver domain YP_1848 SM00862 Transcriptional regulatory protein, C terminal YP_1855 SM00450 Rhodanese Homology Domain YP_1861 SM01400 YP_1861 YP_1865 SM00937 YP_1865 YP_1877 SM01321 YP_1877 YP_1880 SM00481 DNA polymerase alpha chain like domain YP_1889 SM00836 DALR anticodon binding domain YP_1889 SM01016 Arginyl tRNA synthetase N terminal dom YP_1900 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YP_1901 SM00382 ATPases associated with a variety of cellular activities YP_1903 SM00382 ATPases associated with a variety of cellular activities YP_1905 SM00257 Lysin motif YP_1914 SM00487 DEAD-like helicases superfamily YP_1914 SM00491 YP_1914 YP_1918 SM00341 Helicase and RNase D C-terminal YP_1918 SM00474 3'-5' exonuclease YP_1929 SM00382 ATPases associated with a variety of cellular activities YP_1937 SM01040 BRO family, N-terminal domain YP_1946 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_1954 SM00763 PrkA AAA domain YP_1957 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YP_1961 SM00870 YP_1961 YP_1965 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YP_1965 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YP_1965 SM00493 YP_1965 YP_1972 SM00448 cheY-homologous receiver domain YP_1973 SM00984 UDP binding domain YP_1974 SM00528 Domain in histone-like proteins of HNS family YP_1982 SM00382 ATPases associated with a variety of cellular activities YP_1983 SM00382 ATPases associated with a variety of cellular activities YP_1986 SM00155 Phospholipase D. Active site motifs. YP_2000 SM00749 bacterial OsmY and nodulation domain YP_2008 SM00481 DNA polymerase alpha chain like domain YP_2010 SM00363 S4 RNA-binding domain YP_2012 SM00822 YP_2012 YP_2016 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YP_2016 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YP_2016 SM00493 YP_2016 YP_2022 SM00014 Acid phosphatase homologues YP_2024 SM00028 Tetratricopeptide repeats YP_2026 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family YP_2029 SM01007 Class II Aldolase and Adducin N-terminal domain YP_2034 SM00357 Cold shock protein domain YP_2034 SM00955 YP_2034 YP_2037 SM00478 endonuclease III YP_2037 SM00525 YP_2037 YP_2039 SM00900 YP_2039 YP_2041 SM00342 helix_turn_helix, arabinose operon control protein YP_2048 SM00382 ATPases associated with a variety of cellular activities YP_2052 SM00382 ATPases associated with a variety of cellular activities YP_2067 SM00354 helix_turn _helix lactose operon repressor YP_2073 SM00382 ATPases associated with a variety of cellular activities YP_2083 SM00098 Alkaline phosphatase homologues YP_2085 SM00100 Cyclic nucleotide-monophosphate binding domain YP_2085 SM00419 helix_turn_helix, cAMP Regulatory protein YP_2088 SM01002 Alanine dehydrogenase/PNT, C-terminal domain YP_2088 SM01003 Alanine dehydrogenase/PNT, N-terminal domain YP_2093 SM00448 cheY-homologous receiver domain YP_2093 SM00862 Transcriptional regulatory protein, C terminal YP_2096 SM00382 ATPases associated with a variety of cellular activities YP_2098 SM01321 YP_2098 YP_2102 SM00867 YceI-like domain YP_2106 SM00020 Trypsin-like serine protease YP_2107 SM00530 Helix-turn-helix XRE-family like proteins YP_2109 SM00382 ATPases associated with a variety of cellular activities YP_2109 SM00487 DEAD-like helicases superfamily YP_2109 SM00490 helicase superfamily c-terminal domain YP_2109 SM00847 Helicase associated domain (HA2) Add an annotation YP_2120 SM00890 Domain of unknown function YP_2123 SM00422 helix_turn_helix, mercury resistance YP_2128 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YP_2130 SM01321 YP_2130 YP_2131 SM00091 PAS domain YP_2131 SM00382 ATPases associated with a variety of cellular activities YP_2133 SM00953 YP_2133 YP_2140 SM00382 ATPases associated with a variety of cellular activities YP_2141 SM01321 YP_2141 YP_2147 SM00382 ATPases associated with a variety of cellular activities YP_2148 SM00382 ATPases associated with a variety of cellular activities YP_2155 SM00363 S4 RNA-binding domain YP_2160 SM00347 helix_turn_helix multiple antibiotic resistance protein YP_2168 SM00479 YP_2168 YP_2173 SM00354 helix_turn _helix lactose operon repressor YP_2182 SM01321 YP_2182 YP_2185 SM00382 ATPases associated with a variety of cellular activities YP_2189 SM00382 ATPases associated with a variety of cellular activities YP_2210 SM00382 ATPases associated with a variety of cellular activities YP_2214 SM00411 bacterial (prokaryotic) histone like domain YP_2215 SM00873 B3/4 domain YP_2215 SM00874 tRNA synthetase B5 domain YP_2215 SM00896 Ferredoxin-fold anticodon binding domain YP_2221 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YP_2228 SM00382 ATPases associated with a variety of cellular activities YP_2245 SM01321 YP_2245 YP_2252 SM01321 YP_2252 YP_2253 SM00825 Beta-ketoacyl synthase YP_2255 SM00822 YP_2255 YP_2256 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YP_2262 SM00363 S4 RNA-binding domain YP_2263 SM00316 Ribosomal protein S1-like RNA-binding domain YP_2269 SM00421 helix_turn_helix, Lux Regulon YP_2271 SM00450 Rhodanese Homology Domain YP_2276 SM00421 helix_turn_helix, Lux Regulon YP_2297 SM00354 helix_turn _helix lactose operon repressor YP_2299 SM00382 ATPases associated with a variety of cellular activities YP_2305 SM00912 haemagglutination activity domain YP_2311 SM01329 YP_2311 YP_2313 SM00354 helix_turn _helix lactose operon repressor YP_2315 SM00382 ATPases associated with a variety of cellular activities YP_2317 SM00829 Enoylreductase YP_2327 SM00062 Bacterial periplasmic substrate-binding proteins YP_2327 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YP_2329 SM00382 ATPases associated with a variety of cellular activities YP_2330 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YP_2330 SM00091 PAS domain YP_2330 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YP_2335 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YP_2348 SM00354 helix_turn _helix lactose operon repressor YP_2361 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YP_2361 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YP_2362 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YP_2370 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YP_2379 SM00354 helix_turn _helix lactose operon repressor YP_2385 SM00052 Putative diguanylate phosphodiesterase YP_2387 SM00382 ATPases associated with a variety of cellular activities YP_2390 SM00062 Bacterial periplasmic substrate-binding proteins YP_2399 SM00859 Semialdehyde dehydrogenase, NAD binding domain YP_2401 SM00342 helix_turn_helix, arabinose operon control protein YP_2406 SM00825 Beta-ketoacyl synthase YP_2414 SM00463 Small MutS-related domain YP_2416 SM00855 Phosphoglycerate mutase family YP_2430 SM00382 ATPases associated with a variety of cellular activities YP_2444 SM00382 ATPases associated with a variety of cellular activities YP_2449 SM00382 ATPases associated with a variety of cellular activities YP_2460 SM00357 Cold shock protein domain YP_2464 SM00382 ATPases associated with a variety of cellular activities YP_2465 SM00382 ATPases associated with a variety of cellular activities YP_2469 SM00988 UreE urease accessory protein, N-terminal domain YP_2483 SM00342 helix_turn_helix, arabinose operon control protein YP_2491 SM00448 cheY-homologous receiver domain YP_2491 SM00862 Transcriptional regulatory protein, C terminal YP_2492 SM00387 Histidine kinase-like ATPases YP_2492 SM00388 His Kinase A (phosphoacceptor) domain YP_2503 SM00797 Allophanate hydrolase subunit 2 YP_2508 SM00986 Uracil DNA glycosylase superfamily YP_2508 SM00987 UreE urease accessory protein, C-terminal domain YP_2511 SM00248 ankyrin repeats YP_2512 SM00487 DEAD-like helicases superfamily YP_2512 SM00490 helicase superfamily c-terminal domain YP_2522 SM00358 Double-stranded RNA binding motif YP_2522 SM00535 Ribonuclease III family YP_2527 SM01321 YP_2527 YP_2531 SM00382 ATPases associated with a variety of cellular activities YP_2535 SM00062 Bacterial periplasmic substrate-binding proteins YP_2536 SM01211 YP_2536 YP_2540 SM01321 YP_2540 YP_2541 SM00387 Histidine kinase-like ATPases YP_2541 SM00388 His Kinase A (phosphoacceptor) domain YP_2543 SM00382 ATPases associated with a variety of cellular activities YP_2543 SM00448 cheY-homologous receiver domain YP_2545 SM00938 Nitrogen regulatory protein P-II YP_2573 SM00382 ATPases associated with a variety of cellular activities YP_2573 SM01086 C-terminal, D2-small domain, of ClpB protein YP_2582 SM00421 helix_turn_helix, Lux Regulon YP_2586 SM00382 ATPases associated with a variety of cellular activities YP_2590 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YP_2614 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YP_2614 SM00292 breast cancer carboxy-terminal domain YP_2614 SM00532 Ligase N family YP_2615 SM00771 ZipA, C-terminal domain (FtsZ-binding) YP_2621 SM01321 YP_2621 YP_2622 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_2622 SM00387 Histidine kinase-like ATPases YP_2622 SM00388 His Kinase A (phosphoacceptor) domain YP_2623 SM00448 cheY-homologous receiver domain YP_2623 SM00862 Transcriptional regulatory protein, C terminal YP_2625 SM00382 ATPases associated with a variety of cellular activities YP_2626 SM00450 Rhodanese Homology Domain YP_2631 SM00327 von Willebrand factor (vWF) type A domain YP_2632 SM00387 Histidine kinase-like ATPases YP_2632 SM00388 His Kinase A (phosphoacceptor) domain YP_2633 SM00448 cheY-homologous receiver domain YP_2633 SM00862 Transcriptional regulatory protein, C terminal YP_2636 SM00382 ATPases associated with a variety of cellular activities YP_2645 SM00364 Leucine-rich repeats, bacterial type YP_2645 SM00369 Leucine-rich repeats, typical (most populated) subfamily YP_2647 SM01130 YP_2647 YP_2651 SM00869 Autotransporter beta-domain YP_2657 SM00919 Malic enzyme, NAD binding domain YP_2657 SM01274 YP_2657 YP_2661 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YP_2664 SM00421 helix_turn_helix, Lux Regulon YP_2664 SM00448 cheY-homologous receiver domain YP_2670 SM00382 ATPases associated with a variety of cellular activities YP_2682 SM01321 YP_2682 YP_2684 SM01130 YP_2684 YP_2694 SM01321 YP_2694 YP_2700 SM00382 ATPases associated with a variety of cellular activities YP_2706 SM00924 MgtE intracellular N domain YP_2712 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_2713 SM00382 ATPases associated with a variety of cellular activities YP_2718 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_2718 SM00387 Histidine kinase-like ATPases YP_2718 SM00388 His Kinase A (phosphoacceptor) domain YP_2719 SM00448 cheY-homologous receiver domain YP_2719 SM00862 Transcriptional regulatory protein, C terminal YP_2722 SM00046 Diacylglycerol kinase catalytic domain (presumed) YP_2735 SM01321 YP_2735 YP_2737 SM00116 Domain in cystathionine beta-synthase and other proteins. YP_2737 SM01240 YP_2737 YP_2742 SM00564 beta-propeller repeat YP_2746 SM00530 Helix-turn-helix XRE-family like proteins YP_2747 SM00028 Tetratricopeptide repeats YP_2749 SM00562 YP_2749 YP_2750 SM00247 Beta/gamma crystallins YP_2752 SM00869 Autotransporter beta-domain YP_2764 SM00382 ATPases associated with a variety of cellular activities YP_2767 SM00479 YP_2767 YP_2770 SM00849 Metallo-beta-lactamase superfamily YP_2771 SM00257 Lysin motif YP_2776 SM00382 ATPases associated with a variety of cellular activities YP_2776 SM00930 YP_2776 YP_2784 SM01322 YP_2784 YP_2788 SM00977 TilS substrate C-terminal domain YP_2791 SM00481 DNA polymerase alpha chain like domain YP_2797 SM00935 Outer membrane protein (OmpH-like) YP_2799 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YP_2809 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YP_2815 SM01321 YP_2815 YP_2819 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YP_2819 SM00475 5'-3' exonuclease YP_2826 SM00925 MltA specific insert domain YP_2827 SM00646 YP_2827 YP_2830 SM00382 ATPases associated with a variety of cellular activities YP_2833 SM00869 Autotransporter beta-domain YP_2837 SM00947 Carbonic anhydrase YP_2841 SM00382 ATPases associated with a variety of cellular activities YP_2855 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YP_2855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_2855 SM00319 Homologues of the ligand binding domain of Tar YP_2857 SM00849 Metallo-beta-lactamase superfamily YP_2862 SM00354 helix_turn _helix lactose operon repressor YP_2864 SM00563 Phosphate acyltransferases YP_2869 SM00927 DNA mismatch repair enzyme MutH YP_2873 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. YP_2885 SM00382 ATPases associated with a variety of cellular activities YP_2896 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_2896 SM00895 YP_2896 YP_2901 SM00858 YP_2901 YP_2903 SM01321 YP_2903 YP_2907 SM00869 Autotransporter beta-domain YP_2915 SM00327 von Willebrand factor (vWF) type A domain YP_2917 SM00327 von Willebrand factor (vWF) type A domain YP_2919 SM00912 haemagglutination activity domain YP_2924 SM00869 Autotransporter beta-domain YP_2927 SM00382 ATPases associated with a variety of cellular activities YP_2929 SM00354 helix_turn _helix lactose operon repressor YP_2934 SM01217 YP_2934 YP_2959 SM00400 zinc finger YP_2959 SM00493 YP_2959 YP_2959 SM00766 DNA primase DnaG DnaB-binding YP_2962 SM01207 YP_2962 YP_2963 SM00905 Dihydroneopterin aldolase YP_2965 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YP_2966 SM00287 Bacterial SH3 domain homologues YP_2967 SM01118 YP_2967 YP_2983 SM00387 Histidine kinase-like ATPases YP_2983 SM00433 TopoisomeraseII YP_2987 SM00434 DNA Topoisomerase IV YP_2988 SM00563 Phosphate acyltransferases YP_2994 SM00342 helix_turn_helix, arabinose operon control protein YP_3010 SM01321 YP_3010 YP_3024 SM00382 ATPases associated with a variety of cellular activities YP_3029 SM00382 ATPases associated with a variety of cellular activities YP_3033 SM00858 YP_3033 YP_3047 SM00862 Transcriptional regulatory protein, C terminal YP_3074 SM00382 ATPases associated with a variety of cellular activities YP_3083 SM00912 haemagglutination activity domain YP_3084 SM01018 B12 binding domain YP_3085 SM00346 helix_turn_helix isocitrate lyase regulation YP_3091 SM00798 AICARFT/IMPCHase bienzyme YP_3091 SM00851 MGS-like domain YP_3092 SM01209 YP_3092 YP_3092 SM01210 YP_3092 YP_3094 SM00411 bacterial (prokaryotic) histone like domain YP_3107 SM00876 Biotin and Thiamin Synthesis associated domain YP_3109 SM00663 RNA polymerase I subunit A N-terminus YP_3114 SM00649 Ribosomal protein L11/L12 YP_3115 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YP_3115 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YP_3123 SM00859 Semialdehyde dehydrogenase, NAD binding domain YP_3128 SM00382 ATPases associated with a variety of cellular activities YP_3141 SM00382 ATPases associated with a variety of cellular activities YP_3146 SM00382 ATPases associated with a variety of cellular activities YP_3176 SM00487 DEAD-like helicases superfamily YP_3176 SM00490 helicase superfamily c-terminal domain YP_3178 SM00357 Cold shock protein domain YP_3178 SM00382 ATPases associated with a variety of cellular activities YP_3178 SM00959 Rho termination factor, N-terminal domain YP_3182 SM00984 UDP binding domain YP_3193 SM01321 YP_3193 YP_3200 SM01219 YP_3200 YP_3215 SM00341 Helicase and RNase D C-terminal YP_3215 SM00487 DEAD-like helicases superfamily YP_3215 SM00490 helicase superfamily c-terminal domain YP_3215 SM00956 YP_3215 YP_3235 SM00382 ATPases associated with a variety of cellular activities YP_3235 SM00962 SRP54-type protein, GTPase domain YP_3235 SM00963 SRP54-type protein, helical bundle domain YP_3236 SM00382 ATPases associated with a variety of cellular activities YP_3239 SM01321 YP_3239 YP_3244 SM00382 ATPases associated with a variety of cellular activities YP_3245 SM00382 ATPases associated with a variety of cellular activities YP_3256 SM00382 ATPases associated with a variety of cellular activities YP_3276 SM00382 ATPases associated with a variety of cellular activities YP_3277 SM01004 Delta-aminolevulinic acid dehydratase YP_3278 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YP_3278 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YP_3294 SM00382 ATPases associated with a variety of cellular activities YP_3303 SM00642 Alpha-amylase domain YP_3304 SM00642 Alpha-amylase domain YP_3306 SM00257 Lysin motif YP_3306 SM00634 Bacterial Ig-like domain (group 1) YP_3311 SM00859 Semialdehyde dehydrogenase, NAD binding domain YP_3317 SM00354 helix_turn _helix lactose operon repressor YP_3321 SM00448 cheY-homologous receiver domain YP_3321 SM00862 Transcriptional regulatory protein, C terminal YP_3327 SM00382 ATPases associated with a variety of cellular activities YP_3328 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_3328 SM00387 Histidine kinase-like ATPases YP_3328 SM00388 His Kinase A (phosphoacceptor) domain YP_3328 SM00448 cheY-homologous receiver domain YP_3331 SM01321 YP_3331 YP_3334 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YP_3335 SM00235 Zinc-dependent metalloprotease YP_3347 SM00869 Autotransporter beta-domain YP_3351 SM00052 Putative diguanylate phosphodiesterase YP_3359 SM00052 Putative diguanylate phosphodiesterase YP_3359 SM00267 diguanylate cyclase YP_3361 SM00382 ATPases associated with a variety of cellular activities YP_3362 SM00382 ATPases associated with a variety of cellular activities YP_3368 SM00912 haemagglutination activity domain YP_3370 SM00387 Histidine kinase-like ATPases YP_3371 SM00421 helix_turn_helix, Lux Regulon YP_3371 SM00448 cheY-homologous receiver domain YP_3377 SM00382 ATPases associated with a variety of cellular activities YP_3388 SM00382 ATPases associated with a variety of cellular activities YP_3391 SM00530 Helix-turn-helix XRE-family like proteins YP_3396 SM00342 helix_turn_helix, arabinose operon control protein YP_3398 SM00382 ATPases associated with a variety of cellular activities YP_3410 SM00052 Putative diguanylate phosphodiesterase YP_3410 SM00091 PAS domain YP_3410 SM00267 diguanylate cyclase YP_3415 SM00869 Autotransporter beta-domain YP_3416 SM00364 Leucine-rich repeats, bacterial type YP_3417 SM00364 Leucine-rich repeats, bacterial type YP_3418 SM00364 Leucine-rich repeats, bacterial type YP_3418 SM00369 Leucine-rich repeats, typical (most populated) subfamily YP_3423 SM00823 Phosphopantetheine attachment site YP_3423 SM00825 Beta-ketoacyl synthase YP_3430 SM00382 ATPases associated with a variety of cellular activities YP_3431 SM00382 ATPases associated with a variety of cellular activities YP_3436 SM00869 Autotransporter beta-domain YP_3443 SM00354 helix_turn _helix lactose operon repressor YP_3449 SM01006 Siderophore biosynthesis protein domain YP_3454 SM00421 helix_turn_helix, Lux Regulon YP_3467 SM00382 ATPases associated with a variety of cellular activities YP_3467 SM01086 C-terminal, D2-small domain, of ClpB protein YP_3483 SM00382 ATPases associated with a variety of cellular activities YP_3489 SM00478 endonuclease III YP_3489 SM00525 YP_3489 YP_3496 SM00729 Elongator protein 3, MiaB family, Radical SAM YP_3498 SM01152 YP_3498 YP_3502 SM00382 ATPases associated with a variety of cellular activities YP_3505 SM00732 Likely ribonuclease with RNase H fold. YP_3511 SM00731 SprT homologues. YP_3516 SM00861 Transketolase, pyrimidine binding domain YP_3517 SM01321 YP_3517 YP_3518 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YP_3523 SM00382 ATPases associated with a variety of cellular activities YP_3525 SM01321 YP_3525 YP_3527 SM00420 helix_turn_helix, Deoxyribose operon repressor YP_3527 SM01134 YP_3527 YP_3543 SM00354 helix_turn _helix lactose operon repressor YP_3546 SM00354 helix_turn _helix lactose operon repressor YP_3554 SM00382 ATPases associated with a variety of cellular activities YP_3555 SM00382 ATPases associated with a variety of cellular activities YP_3578 SM00778 Zinc-binding domain of primase-helicase YP_3578 SM00885 D5 N terminal like YP_3579 SM00530 Helix-turn-helix XRE-family like proteins YP_3581 SM00530 Helix-turn-helix XRE-family like proteins YP_3585 SM00937 YP_3585 YP_3591 SM00387 Histidine kinase-like ATPases YP_3591 SM00388 His Kinase A (phosphoacceptor) domain YP_3592 SM00448 cheY-homologous receiver domain YP_3592 SM00862 Transcriptional regulatory protein, C terminal YP_3607 SM01011 Aminopeptidase P, N-terminal domain YP_3617 SM00382 ATPases associated with a variety of cellular activities YP_3620 SM00957 SecA DEAD-like domain YP_3620 SM00958 SecA preprotein cross-linking domain YP_3624 SM00864 Tubulin/FtsZ family, GTPase domain YP_3624 SM00865 Tubulin/FtsZ family, C-terminal domain YP_3625 SM00842 Cell division protein FtsA YP_3640 SM00354 helix_turn _helix lactose operon repressor YP_3641 SM01321 YP_3641 YP_3648 SM01321 YP_3648 YP_3649 SM00917 LeuA allosteric (dimerisation) domain YP_3650 SM01329 YP_3650 YP_3659 SM00382 ATPases associated with a variety of cellular activities YP_3661 SM00486 DNA polymerase type-B family YP_3662 SM00487 DEAD-like helicases superfamily YP_3662 SM00490 helicase superfamily c-terminal domain YP_3673 SM00382 ATPases associated with a variety of cellular activities YP_3673 SM01086 C-terminal, D2-small domain, of ClpB protein YP_3683 SM00271 DnaJ molecular chaperone homology domain YP_3687 SM00650 Ribosomal RNA adenine dimethylases YP_3697 SM00851 MGS-like domain YP_3697 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YP_3698 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain YP_3700 SM01321 YP_3700 YP_3706 SM00904 Riboflavin kinase YP_3711 SM00271 DnaJ molecular chaperone homology domain YP_3716 SM00852 Probable molybdopterin binding domain YP_3725 SM00448 cheY-homologous receiver domain YP_3725 SM00862 Transcriptional regulatory protein, C terminal YP_3727 SM00342 helix_turn_helix, arabinose operon control protein YP_3727 SM00871 Bacterial transcription activator, effector binding domain YP_3728 SM00855 Phosphoglycerate mutase family YP_3732 SM00831 Cation transporter/ATPase, N-terminus YP_3734 SM00267 diguanylate cyclase YP_3736 SM00382 ATPases associated with a variety of cellular activities YP_3738 SM00530 Helix-turn-helix XRE-family like proteins YP_3739 SM00382 ATPases associated with a variety of cellular activities YP_3744 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain YP_3745 SM01133 YP_3745 YP_3750 SM00749 bacterial OsmY and nodulation domain YP_3756 SM00267 diguanylate cyclase YP_3769 SM00382 ATPases associated with a variety of cellular activities YP_3773 SM01133 YP_3773 YP_3780 SM00342 helix_turn_helix, arabinose operon control protein YP_3794 SM00382 ATPases associated with a variety of cellular activities YP_3796 SM00382 ATPases associated with a variety of cellular activities YP_3805 SM00749 bacterial OsmY and nodulation domain YP_3809 SM00073 Histidine Phosphotransfer domain YP_3809 SM00091 PAS domain YP_3809 SM00387 Histidine kinase-like ATPases YP_3809 SM00388 His Kinase A (phosphoacceptor) domain YP_3809 SM00448 cheY-homologous receiver domain YP_3810 SM00729 Elongator protein 3, MiaB family, Radical SAM YP_3821 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YP_3822 SM01321 YP_3822 YP_3823 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YP_3830 SM00382 ATPases associated with a variety of cellular activities YP_3832 SM00116 Domain in cystathionine beta-synthase and other proteins. YP_3836 SM00382 ATPases associated with a variety of cellular activities YP_3846 SM00354 helix_turn _helix lactose operon repressor YP_3848 SM00642 Alpha-amylase domain YP_3877 SM00316 Ribosomal protein S1-like RNA-binding domain YP_3882 SM00052 Putative diguanylate phosphodiesterase YP_3882 SM00267 diguanylate cyclase YP_3883 SM00829 Enoylreductase YP_3888 SM00878 Biotin carboxylase C-terminal domain YP_3896 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_3896 SM00895 YP_3896 YP_3900 SM00849 Metallo-beta-lactamase superfamily YP_3903 SM00357 Cold shock protein domain YP_3904 SM00357 Cold shock protein domain YP_3905 SM01321 YP_3905 YP_3913 SM00382 ATPases associated with a variety of cellular activities YP_3920 SM00382 ATPases associated with a variety of cellular activities YP_3925 SM01133 YP_3925 YP_3928 SM00342 helix_turn_helix, arabinose operon control protein YP_3937 SM00530 Helix-turn-helix XRE-family like proteins YP_3940 SM00860 SMI1 / KNR4 family YP_3951 SM00382 ATPases associated with a variety of cellular activities YP_3951 SM01086 C-terminal, D2-small domain, of ClpB protein YP_3973 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YP_3973 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_3973 SM01358 YP_3973 YP_3989 SM00642 Alpha-amylase domain YP_4002 SM00387 Histidine kinase-like ATPases YP_4002 SM00433 TopoisomeraseII YP_4004 SM00480 DNA polymerase III beta subunit YP_4005 SM00382 ATPases associated with a variety of cellular activities YP_4005 SM00760 Bacterial dnaA protein helix-turn-helix domain YP_4018 SM00062 Bacterial periplasmic substrate-binding proteins YP_4021 SM00382 ATPases associated with a variety of cellular activities YP_4028 SM00382 ATPases associated with a variety of cellular activities YP_4037 SM01228 YP_4037 YP_pCD02 SM00382 ATPases associated with a variety of cellular activities YP_pCD05 SM00155 Phospholipase D. Active site motifs. YP_pCD13 SM00220 Serine/Threonine protein kinases, catalytic domain YP_pCD17 SM00194 Protein tyrosine phosphatase, catalytic domain YP_pCD17 SM00404 Protein tyrosine phosphatase, catalytic domain motif YP_pCD34 SM00342 helix_turn_helix, arabinose operon control protein YP_pCD43 SM00382 ATPases associated with a variety of cellular activities YP_pCD60 SM00364 Leucine-rich repeats, bacterial type YP_pCD75 SM00470 ParB-like nuclease domain YP_pCD92 SM00857 Resolvase, N terminal domain YP_pCRY03 SM00530 Helix-turn-helix XRE-family like proteins YP_pCRY04 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YP_pCRY24 SM00318 Staphylococcal nuclease homologues YP_pCRY29 SM00530 Helix-turn-helix XRE-family like proteins YP_pMT002 SM00382 ATPases associated with a variety of cellular activities YP_pMT009 SM00232 JAB/MPN domain YP_pMT015 SM00635 Bacterial Ig-like domain 2 YP_pMT021 SM00635 Bacterial Ig-like domain 2 YP_pMT030 SM00382 ATPases associated with a variety of cellular activities YP_pMT031 SM00470 ParB-like nuclease domain YP_pMT032 SM00470 ParB-like nuclease domain YP_pMT033 SM00487 DEAD-like helicases superfamily YP_pMT033 SM00490 helicase superfamily c-terminal domain YP_pMT043 SM01321 YP_pMT043 YP_pMT054 SM00062 Bacterial periplasmic substrate-binding proteins YP_pMT064 SM00244 prohibitin homologues YP_pMT068 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YP_pMT068 SM00475 5'-3' exonuclease YP_pMT075 SM00382 ATPases associated with a variety of cellular activities YP_pMT085 SM00342 helix_turn_helix, arabinose operon control protein YP_pMT095 SM00382 ATPases associated with a variety of cellular activities YP_pMT097 SM00470 ParB-like nuclease domain YP_pMT109 SM00382 ATPases associated with a variety of cellular activities YP_pMT112 SM00470 ParB-like nuclease domain YP_pMT116 SM00857 Resolvase, N terminal domain YP_pMT119 SM00155 Phospholipase D. Active site motifs. YP_pPCP02 SM00382 ATPases associated with a variety of cellular activities YP_pPCP09 SM00530 Helix-turn-helix XRE-family like proteins