YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 Gene3D G3DSA:3.40.50.1980 52 209 2.2E-55 T 14-10-2018 YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 PRINTS PR00691 Adhesin B signature 279 297 2.1E-38 T 14-10-2018 IPR006129 Adhesin B GO:0007155 YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 PRINTS PR00691 Adhesin B signature 234 252 2.1E-38 T 14-10-2018 IPR006129 Adhesin B GO:0007155 YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 PRINTS PR00691 Adhesin B signature 53 74 2.1E-38 T 14-10-2018 IPR006129 Adhesin B GO:0007155 YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 PRINTS PR00691 Adhesin B signature 78 96 2.1E-38 T 14-10-2018 IPR006129 Adhesin B GO:0007155 YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 PRINTS PR00691 Adhesin B signature 208 225 2.1E-38 T 14-10-2018 IPR006129 Adhesin B GO:0007155 YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 PRINTS PR00691 Adhesin B signature 97 116 2.1E-38 T 14-10-2018 IPR006129 Adhesin B GO:0007155 YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 PRINTS PR00691 Adhesin B signature 257 274 2.1E-38 T 14-10-2018 IPR006129 Adhesin B GO:0007155 YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 Pfam PF01297 Zinc-uptake complex component A periplasmic 56 319 5.1E-80 T 14-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 PRINTS PR00690 Adhesin family signature 287 306 1.7E-46 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 PRINTS PR00690 Adhesin family signature 208 229 1.7E-46 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 PRINTS PR00690 Adhesin family signature 261 279 1.7E-46 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 PRINTS PR00690 Adhesin family signature 84 97 1.7E-46 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 PRINTS PR00690 Adhesin family signature 97 114 1.7E-46 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 PRINTS PR00690 Adhesin family signature 53 71 1.7E-46 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 Gene3D G3DSA:3.40.50.1980 210 321 3.1E-41 T 14-10-2018 YP_2227 14f809100f3b4c93a00d54536cfc00a3 323 SUPERFAMILY SSF53807 51 322 2.06E-91 T 14-10-2018 YP_0645 b77e344472656a6feb9b421dcf1452d6 358 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 356 2.8E-74 T 14-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 YP_0645 b77e344472656a6feb9b421dcf1452d6 358 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 356 5.0E-139 T 14-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 YP_3839 5cac082a61ea0911339e5837e5a1ffd6 164 SUPERFAMILY SSF55804 12 158 1.57E-40 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YP_3839 5cac082a61ea0911339e5837e5a1ffd6 164 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 12 158 1.4E-59 T 14-10-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 YP_3839 5cac082a61ea0911339e5837e5a1ffd6 164 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 16 158 2.4E-36 T 14-10-2018 IPR002178 PTS EIIA type-2 domain YP_3839 5cac082a61ea0911339e5837e5a1ffd6 164 Gene3D G3DSA:3.40.930.10 5 161 9.5E-61 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YP_3839 5cac082a61ea0911339e5837e5a1ffd6 164 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 61 77 - T 14-10-2018 IPR002178 PTS EIIA type-2 domain YP_0261 b4d6a2d59942a2ee4c8c0157da5c70ed 183 Gene3D G3DSA:3.40.80.10 1 180 1.7E-55 T 14-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YP_0261 b4d6a2d59942a2ee4c8c0157da5c70ed 183 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 30 166 3.1E-26 T 14-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YP_0261 b4d6a2d59942a2ee4c8c0157da5c70ed 183 SUPERFAMILY SSF55846 2 181 4.45E-66 T 14-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YP_0261 b4d6a2d59942a2ee4c8c0157da5c70ed 183 SMART SM00644 16 166 1.4E-51 T 14-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YP_0057 dc06b743d29cc1b1cec1281473821375 329 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 11 327 2.3E-125 T 14-10-2018 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 YP_0057 dc06b743d29cc1b1cec1281473821375 329 SUPERFAMILY SSF53756 9 328 2.83E-74 T 14-10-2018 YP_0057 dc06b743d29cc1b1cec1281473821375 329 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 86 321 3.2E-71 T 14-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 YP_0057 dc06b743d29cc1b1cec1281473821375 329 Gene3D G3DSA:3.40.50.2000 172 328 1.4E-55 T 14-10-2018 YP_0057 dc06b743d29cc1b1cec1281473821375 329 Gene3D G3DSA:3.40.50.2000 9 171 2.3E-61 T 14-10-2018 YP_0812 e3d67f84f33b1e03915aa37cee641e97 214 Gene3D G3DSA:3.40.50.300 1 214 1.6E-79 T 14-10-2018 YP_0812 e3d67f84f33b1e03915aa37cee641e97 214 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 14-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 YP_0812 e3d67f84f33b1e03915aa37cee641e97 214 Hamap MF_00235 Adenylate kinase [adk]. 1 214 52.104 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 YP_0812 e3d67f84f33b1e03915aa37cee641e97 214 TIGRFAM TIGR01351 adk: adenylate kinase 2 212 2.9E-75 T 14-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 YP_0812 e3d67f84f33b1e03915aa37cee641e97 214 Pfam PF00406 Adenylate kinase 5 185 5.8E-60 T 14-10-2018 YP_0812 e3d67f84f33b1e03915aa37cee641e97 214 SUPERFAMILY SSF52540 1 212 1.67E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0812 e3d67f84f33b1e03915aa37cee641e97 214 PRINTS PR00094 Adenylate kinase signature 81 97 7.2E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 YP_0812 e3d67f84f33b1e03915aa37cee641e97 214 PRINTS PR00094 Adenylate kinase signature 4 17 7.2E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 YP_0812 e3d67f84f33b1e03915aa37cee641e97 214 PRINTS PR00094 Adenylate kinase signature 173 187 7.2E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 YP_0812 e3d67f84f33b1e03915aa37cee641e97 214 PRINTS PR00094 Adenylate kinase signature 32 46 7.2E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 YP_0812 e3d67f84f33b1e03915aa37cee641e97 214 PRINTS PR00094 Adenylate kinase signature 156 171 7.2E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 YP_0812 e3d67f84f33b1e03915aa37cee641e97 214 Pfam PF05191 Adenylate kinase, active site lid 123 158 1.0E-15 T 14-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 YP_0520 c5f046db7128b2ea4f0c810acf33dc2b 350 Gene3D G3DSA:2.40.50.140 34 101 2.8E-26 T 14-10-2018 YP_0520 c5f046db7128b2ea4f0c810acf33dc2b 350 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 72 334 1.9E-92 T 14-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 YP_0520 c5f046db7128b2ea4f0c810acf33dc2b 350 Gene3D G3DSA:1.10.40.50 276 349 2.8E-28 T 14-10-2018 YP_0520 c5f046db7128b2ea4f0c810acf33dc2b 350 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 39 340 37.237 T 14-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 YP_0520 c5f046db7128b2ea4f0c810acf33dc2b 350 Gene3D G3DSA:3.40.50.300 102 275 2.2E-47 T 14-10-2018 YP_0520 c5f046db7128b2ea4f0c810acf33dc2b 350 SUPERFAMILY SSF52540 113 340 5.74E-57 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0520 c5f046db7128b2ea4f0c810acf33dc2b 350 Pfam PF03193 RsgA GTPase 99 276 2.4E-54 T 14-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 SUPERFAMILY SSF82693 564 666 4.19E-27 T 14-10-2018 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 SUPERFAMILY SSF82866 826 1021 4.71E-46 T 14-10-2018 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 Gene3D G3DSA:3.30.70.1430 38 812 1.2E-300 T 14-10-2018 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 Gene3D G3DSA:3.30.2090.10 716 804 1.2E-300 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 SUPERFAMILY SSF82714 717 803 1.7E-16 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 SUPERFAMILY SSF82693 38 131 1.96E-26 T 14-10-2018 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1033 0.0 T 14-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 Gene3D G3DSA:3.30.2090.10 179 276 1.2E-300 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 Gene3D G3DSA:3.30.70.1430 566 663 1.2E-300 T 14-10-2018 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 SUPERFAMILY SSF82714 183 273 4.45E-22 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 SUPERFAMILY SSF82866 297 499 5.49E-45 T 14-10-2018 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 SUPERFAMILY SSF82693 667 852 4.45E-25 T 14-10-2018 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 Gene3D G3DSA:3.30.70.1440 664 861 1.2E-300 T 14-10-2018 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 SUPERFAMILY SSF82693 136 331 9.07E-23 T 14-10-2018 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 Gene3D G3DSA:1.20.1640.10 8 511 1.2E-300 T 14-10-2018 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 Pfam PF00873 AcrB/AcrD/AcrF family 1 1021 0.0 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 Gene3D G3DSA:1.20.1640.10 512 1018 1.2E-300 T 14-10-2018 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 Gene3D G3DSA:3.30.70.1320 133 333 1.2E-300 T 14-10-2018 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 7.4E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 PRINTS PR00702 Acriflavin resistance protein family signature 392 416 7.4E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 7.4E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 7.4E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 7.4E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 PRINTS PR00702 Acriflavin resistance protein family signature 337 360 7.4E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 7.4E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 7.4E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_3412 500abd7ec4d7fc9d6ecc6d1c9438f620 1039 PRINTS PR00702 Acriflavin resistance protein family signature 364 385 7.4E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_pCRY10 00b8fab397fde2bec8a8dc42a77cba03 234 Pfam PF07996 Type IV secretion system proteins 22 215 6.1E-47 T 14-10-2018 IPR014158 Type IV secretion system, VirB5 YP_pCRY10 00b8fab397fde2bec8a8dc42a77cba03 234 Gene3D G3DSA:1.20.58.430 25 218 4.0E-15 T 14-10-2018 IPR023220 Type IV secretion system, VirB5-domain YP_pCRY10 00b8fab397fde2bec8a8dc42a77cba03 234 SUPERFAMILY SSF101082 22 217 8.37E-39 T 14-10-2018 YP_0904 8b44447843f3eb4cc9a340fa107f0dcf 271 SUPERFAMILY SSF46785 6 65 3.96E-11 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0904 8b44447843f3eb4cc9a340fa107f0dcf 271 SMART SM00420 8 60 7.8E-12 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_0904 8b44447843f3eb4cc9a340fa107f0dcf 271 Pfam PF08220 DeoR-like helix-turn-helix domain 8 62 1.2E-11 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_0904 8b44447843f3eb4cc9a340fa107f0dcf 271 SMART SM01134 75 238 3.1E-61 T 14-10-2018 YP_0904 8b44447843f3eb4cc9a340fa107f0dcf 271 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 40 58 2.8E-5 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_0904 8b44447843f3eb4cc9a340fa107f0dcf 271 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 26 40 2.8E-5 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_0904 8b44447843f3eb4cc9a340fa107f0dcf 271 Pfam PF00455 DeoR C terminal sensor domain 77 236 1.0E-48 T 14-10-2018 IPR014036 DeoR C-terminal sensor domain YP_0904 8b44447843f3eb4cc9a340fa107f0dcf 271 SUPERFAMILY SSF100950 76 236 6.51E-26 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_0904 8b44447843f3eb4cc9a340fa107f0dcf 271 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 14-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 YP_0904 8b44447843f3eb4cc9a340fa107f0dcf 271 Gene3D G3DSA:1.10.10.10 1 60 6.7E-6 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 SUPERFAMILY SSF74650 772 1056 9.26E-92 T 14-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 Hamap MF_01687 Beta-galactosidase [lacZ]. 13 1059 17.764 T 14-10-2018 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase GO:0016798 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 Gene3D G3DSA:2.60.40.10 227 349 3.0E-21 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 SUPERFAMILY SSF51445 351 638 3.59E-99 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 401 426 - T 14-10-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 SUPERFAMILY SSF49785 22 226 3.12E-70 T 14-10-2018 IPR008979 Galactose-binding-like domain superfamily YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 Gene3D G3DSA:2.60.40.10 641 747 7.4E-22 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 Pfam PF00703 Glycosyl hydrolases family 2 228 349 3.1E-11 T 14-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 SUPERFAMILY SSF49303 637 746 2.7E-28 T 14-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 SUPERFAMILY SSF49303 228 349 1.64E-20 T 14-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 463 477 - T 14-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 351 644 1.3E-113 T 14-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 SMART SM01038 784 1057 1.6E-118 T 14-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 PRINTS PR00132 Glycosyl hydrolase family 2 signature 463 478 9.8E-38 T 14-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 PRINTS PR00132 Glycosyl hydrolase family 2 signature 391 409 9.8E-38 T 14-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 PRINTS PR00132 Glycosyl hydrolase family 2 signature 547 562 9.8E-38 T 14-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 PRINTS PR00132 Glycosyl hydrolase family 2 signature 360 374 9.8E-38 T 14-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 PRINTS PR00132 Glycosyl hydrolase family 2 signature 154 169 9.8E-38 T 14-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 Gene3D G3DSA:3.20.20.80 350 638 3.7E-124 T 14-10-2018 YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 Gene3D G3DSA:2.60.120.260 12 226 3.0E-80 T 14-10-2018 IPR008979 Galactose-binding-like domain superfamily YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 Pfam PF16353 Domain of unknown function(DUF4981) 655 743 2.8E-15 T 14-10-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 Pfam PF02929 Beta galactosidase small chain 789 1054 2.9E-58 T 14-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 61 226 3.3E-64 T 14-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YP_1785 069b691ca9e463e81959b6445d7c0acf 1060 Gene3D G3DSA:2.70.98.10 770 1059 2.0E-88 T 14-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 YP_2062 d664e6724b0db6caa4ad0ce08a68b811 324 Pfam PF05472 DNA replication terminus site-binding protein (Ter protein) 22 319 3.2E-137 T 14-10-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 YP_2062 d664e6724b0db6caa4ad0ce08a68b811 324 Hamap MF_00483 DNA replication terminus site-binding protein [tus]. 14 322 43.736 T 14-10-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 YP_2062 d664e6724b0db6caa4ad0ce08a68b811 324 Gene3D G3DSA:3.30.54.10 187 319 9.6E-122 T 14-10-2018 YP_2062 d664e6724b0db6caa4ad0ce08a68b811 324 TIGRFAM TIGR02648 rep_term_tus: DNA replication terminus site-binding protein 23 321 1.5E-170 T 14-10-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 YP_2062 d664e6724b0db6caa4ad0ce08a68b811 324 SUPERFAMILY SSF56596 18 320 6.67E-122 T 14-10-2018 IPR036384 Replication terminator Tus superfamily GO:0003677|GO:0005737|GO:0006274 YP_2062 d664e6724b0db6caa4ad0ce08a68b811 324 Gene3D G3DSA:3.50.14.10 27 294 9.6E-122 T 14-10-2018 IPR036381 Replication terminator Tus, domain 1 GO:0003677|GO:0005737|GO:0006274 YP_pCD38 b1a31f2ce8edf8f720a75b0704149f34 88 PIRSF PIRSF004669 1 88 1.4E-26 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_pCD38 b1a31f2ce8edf8f720a75b0704149f34 88 TIGRFAM TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family 5 84 1.7E-34 T 14-10-2018 IPR006306 Type III secretion protein HrpO GO:0009306|GO:0016021 YP_pCD38 b1a31f2ce8edf8f720a75b0704149f34 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 4.7E-26 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_pCD38 b1a31f2ce8edf8f720a75b0704149f34 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 4.7E-26 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_pCD38 b1a31f2ce8edf8f720a75b0704149f34 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 4.7E-26 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_pCD38 b1a31f2ce8edf8f720a75b0704149f34 88 Pfam PF01313 Bacterial export proteins, family 3 6 77 4.4E-28 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_3122 05429d906976d98c06fd12a1189eeec8 389 Gene3D G3DSA:3.40.630.10 25 369 1.2E-80 T 14-10-2018 YP_3122 05429d906976d98c06fd12a1189eeec8 389 SUPERFAMILY SSF55031 186 300 3.44E-22 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain YP_3122 05429d906976d98c06fd12a1189eeec8 389 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 115 152 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 YP_3122 05429d906976d98c06fd12a1189eeec8 389 Gene3D G3DSA:3.30.70.360 186 301 1.2E-80 T 14-10-2018 YP_3122 05429d906976d98c06fd12a1189eeec8 389 Pfam PF01546 Peptidase family M20/M25/M40 81 382 2.7E-33 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 YP_3122 05429d906976d98c06fd12a1189eeec8 389 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 80 89 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 YP_3122 05429d906976d98c06fd12a1189eeec8 389 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 10 382 5.8E-155 T 14-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 YP_3122 05429d906976d98c06fd12a1189eeec8 389 Hamap MF_01108 Acetylornithine deacetylase [argE]. 3 387 65.426 T 14-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 YP_3122 05429d906976d98c06fd12a1189eeec8 389 Pfam PF07687 Peptidase dimerisation domain 183 292 1.3E-25 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain YP_3122 05429d906976d98c06fd12a1189eeec8 389 SUPERFAMILY SSF53187 4 387 2.63E-57 T 14-10-2018 YP_2037 7dc742e021525d1baa49877e6b771802 213 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 14-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 YP_2037 7dc742e021525d1baa49877e6b771802 213 PIRSF PIRSF001435 1 211 6.0E-52 T 14-10-2018 YP_2037 7dc742e021525d1baa49877e6b771802 213 SMART SM00478 38 185 1.4E-54 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 YP_2037 7dc742e021525d1baa49877e6b771802 213 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 14-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 YP_2037 7dc742e021525d1baa49877e6b771802 213 Gene3D G3DSA:1.10.1670.10 11 203 8.1E-79 T 14-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 YP_2037 7dc742e021525d1baa49877e6b771802 213 Pfam PF00633 Helix-hairpin-helix motif 99 127 1.7E-7 T 14-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 YP_2037 7dc742e021525d1baa49877e6b771802 213 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.265 T 14-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 YP_2037 7dc742e021525d1baa49877e6b771802 213 Gene3D G3DSA:1.10.340.30 21 132 8.1E-79 T 14-10-2018 YP_2037 7dc742e021525d1baa49877e6b771802 213 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 4.0E-21 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 YP_2037 7dc742e021525d1baa49877e6b771802 213 SUPERFAMILY SSF48150 2 207 8.01E-74 T 14-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 YP_2037 7dc742e021525d1baa49877e6b771802 213 TIGRFAM TIGR01083 nth: endonuclease III 4 194 1.4E-88 T 14-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 YP_2037 7dc742e021525d1baa49877e6b771802 213 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 1.1E-4 T 14-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 YP_2037 7dc742e021525d1baa49877e6b771802 213 SMART SM00525 186 206 4.4E-5 T 14-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 YP_3746 d69f59cda3f63534a4be509d4d904316 435 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 14 432 6.1E-154 T 14-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 YP_3746 d69f59cda3f63534a4be509d4d904316 435 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 18 91 7.9E-23 T 14-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 YP_3746 d69f59cda3f63534a4be509d4d904316 435 Pfam PF07670 Nucleoside recognition 109 205 4.7E-9 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 YP_3746 d69f59cda3f63534a4be509d4d904316 435 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 211 432 1.6E-75 T 14-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 YP_2624 cedb589de3768756bf0178781466de47 401 SUPERFAMILY SSF111369 54 265 1.11E-20 T 14-10-2018 YP_2624 cedb589de3768756bf0178781466de47 401 Gene3D G3DSA:2.40.30.170 220 318 4.7E-31 T 14-10-2018 YP_2624 cedb589de3768756bf0178781466de47 401 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 48 269 4.8E-17 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_2624 cedb589de3768756bf0178781466de47 401 Gene3D G3DSA:2.40.420.20 319 397 4.6E-14 T 14-10-2018 YP_2624 cedb589de3768756bf0178781466de47 401 Gene3D G3DSA:1.10.287.470 97 187 1.1E-15 T 14-10-2018 YP_2624 cedb589de3768756bf0178781466de47 401 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 381 1.5E-48 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YP_0719 c0fad679af35b489b6d942daef32f90a 195 SUPERFAMILY SSF53335 24 177 1.82E-16 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0719 c0fad679af35b489b6d942daef32f90a 195 Pfam PF00398 Ribosomal RNA adenine dimethylase 44 162 1.6E-5 T 14-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm YP_0719 c0fad679af35b489b6d942daef32f90a 195 Gene3D G3DSA:3.40.50.150 9 185 2.1E-12 T 14-10-2018 YP_3347 2211f3b1ab78f8324520969a1822c0a4 1084 SMART SM00869 813 1072 3.2E-28 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_3347 2211f3b1ab78f8324520969a1822c0a4 1084 Gene3D G3DSA:2.160.20.20 346 756 9.4E-66 T 14-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YP_3347 2211f3b1ab78f8324520969a1822c0a4 1084 Gene3D G3DSA:2.160.20.20 119 345 5.8E-11 T 14-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YP_3347 2211f3b1ab78f8324520969a1822c0a4 1084 Gene3D G3DSA:2.40.128.130 772 1084 5.5E-67 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_3347 2211f3b1ab78f8324520969a1822c0a4 1084 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 649 1084 2.2E-112 T 14-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YP_3347 2211f3b1ab78f8324520969a1822c0a4 1084 SUPERFAMILY SSF103515 775 1084 2.88E-42 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_3347 2211f3b1ab78f8324520969a1822c0a4 1084 Pfam PF03212 Pertactin 646 752 5.2E-12 T 14-10-2018 IPR004899 Pertactin, central region YP_3347 2211f3b1ab78f8324520969a1822c0a4 1084 SUPERFAMILY SSF51126 176 753 3.45E-47 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor YP_3347 2211f3b1ab78f8324520969a1822c0a4 1084 Pfam PF03797 Autotransporter beta-domain 817 1061 7.7E-37 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_3398 8a84eca6c013c4ccf00cf4179f794552 510 ProSitePatterns PS00211 ABC transporters family signature. 406 420 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3398 8a84eca6c013c4ccf00cf4179f794552 510 SMART SM00382 29 219 6.1E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3398 8a84eca6c013c4ccf00cf4179f794552 510 SMART SM00382 286 482 1.6E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3398 8a84eca6c013c4ccf00cf4179f794552 510 Gene3D G3DSA:3.40.50.300 256 509 7.9E-44 T 14-10-2018 YP_3398 8a84eca6c013c4ccf00cf4179f794552 510 Gene3D G3DSA:3.40.50.300 3 240 4.2E-53 T 14-10-2018 YP_3398 8a84eca6c013c4ccf00cf4179f794552 510 SUPERFAMILY SSF52540 243 485 2.57E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3398 8a84eca6c013c4ccf00cf4179f794552 510 Pfam PF00005 ABC transporter 278 433 1.5E-18 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3398 8a84eca6c013c4ccf00cf4179f794552 510 Pfam PF00005 ABC transporter 20 171 1.9E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3398 8a84eca6c013c4ccf00cf4179f794552 510 SUPERFAMILY SSF52540 3 229 9.67E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3398 8a84eca6c013c4ccf00cf4179f794552 510 TIGRFAM TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein 4 502 1.7E-264 T 14-10-2018 IPR013455 ABC transporter, D-xylose, ATP-binding protein GO:0005524|GO:0015614|GO:0015753|GO:0016020 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 Gene3D G3DSA:3.40.50.800 532 642 6.1E-31 T 14-10-2018 IPR036621 Anticodon-binding domain superfamily YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 SMART SM00863 170 219 2.6E-19 T 14-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 634 34.002 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 SUPERFAMILY SSF81271 3 61 1.85E-16 T 14-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 Pfam PF03129 Anticodon binding domain 541 628 4.4E-21 T 14-10-2018 IPR004154 Anticodon-binding YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 318 529 2.8E-50 T 14-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 SUPERFAMILY SSF55681 243 525 5.84E-96 T 14-10-2018 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 SUPERFAMILY SSF52954 529 636 1.15E-31 T 14-10-2018 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 Gene3D G3DSA:3.30.54.20 130 187 3.9E-62 T 14-10-2018 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 Gene3D G3DSA:3.30.930.10 223 531 2.0E-128 T 14-10-2018 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 329 357 9.0E-55 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 362 385 9.0E-55 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 464 492 9.0E-55 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 507 520 9.0E-55 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 534 546 9.0E-55 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 Gene3D G3DSA:3.10.20.30 1 64 3.6E-22 T 14-10-2018 IPR012675 Beta-grasp domain superfamily YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 219 3.8E-14 T 14-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 SUPERFAMILY SSF55186 63 241 7.19E-64 T 14-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 631 4.0E-242 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 Pfam PF02824 TGS domain 4 61 1.4E-11 T 14-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 YP_2221 f861d3aa4b80df4efebdb340763c66f5 642 Gene3D G3DSA:3.30.980.10 69 222 3.9E-62 T 14-10-2018 YP_2293 825d7d01dcd13e2980cd9aad1d947d08 351 Pfam PF04041 beta-1,4-mannooligosaccharide phosphorylase 107 345 3.5E-53 T 14-10-2018 IPR007184 Mannoside phosphorylase YP_2293 825d7d01dcd13e2980cd9aad1d947d08 351 SUPERFAMILY SSF75005 2 341 9.42E-77 T 14-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily YP_2293 825d7d01dcd13e2980cd9aad1d947d08 351 PIRSF PIRSF016202 3 351 5.4E-115 T 14-10-2018 IPR007184 Mannoside phosphorylase YP_1051 3fef45878d90d18819418069440649bd 589 TIGRFAM TIGR00634 recN: DNA repair protein RecN 37 588 1.4E-166 T 14-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 YP_1051 3fef45878d90d18819418069440649bd 589 SUPERFAMILY SSF52540 38 542 1.92E-30 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1051 3fef45878d90d18819418069440649bd 589 PIRSF PIRSF003128 37 589 1.0E-156 T 14-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 YP_1051 3fef45878d90d18819418069440649bd 589 SUPERFAMILY SSF52540 27 253 6.9E-66 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1051 3fef45878d90d18819418069440649bd 589 Gene3D G3DSA:3.40.50.300 345 589 3.0E-50 T 14-10-2018 YP_1051 3fef45878d90d18819418069440649bd 589 Gene3D G3DSA:3.40.50.300 37 261 3.1E-44 T 14-10-2018 YP_1051 3fef45878d90d18819418069440649bd 589 Pfam PF02463 RecF/RecN/SMC N terminal domain 38 548 4.6E-19 T 14-10-2018 IPR003395 RecF/RecN/SMC, N-terminal YP_1675 27f2211708b9bfce74ecf2f496fcb4d2 289 Gene3D G3DSA:3.20.20.140 15 289 2.1E-83 T 14-10-2018 YP_1675 27f2211708b9bfce74ecf2f496fcb4d2 289 Pfam PF04909 Amidohydrolase 27 289 3.9E-48 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 YP_1675 27f2211708b9bfce74ecf2f496fcb4d2 289 SUPERFAMILY SSF51556 22 289 8.51E-79 T 14-10-2018 IPR032466 Metal-dependent hydrolase YP_0215 1810ac9ab15ee2565f51d440023e927c 63 Pfam PF00831 Ribosomal L29 protein 4 60 1.1E-22 T 14-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0215 1810ac9ab15ee2565f51d440023e927c 63 SUPERFAMILY SSF46561 1 61 1.57E-21 T 14-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0215 1810ac9ab15ee2565f51d440023e927c 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 14-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0215 1810ac9ab15ee2565f51d440023e927c 63 Gene3D G3DSA:1.10.287.310 1 63 4.3E-30 T 14-10-2018 YP_0215 1810ac9ab15ee2565f51d440023e927c 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 1.9E-22 T 14-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0215 1810ac9ab15ee2565f51d440023e927c 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.616 T 14-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_2805 1da0de38868595c37a500222ecedbddd 241 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 240 44.036 T 14-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 YP_2805 1da0de38868595c37a500222ecedbddd 241 PIRSF PIRSF005650 4 241 2.7E-90 T 14-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 YP_2805 1da0de38868595c37a500222ecedbddd 241 SUPERFAMILY SSF53633 7 239 6.28E-73 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YP_2805 1da0de38868595c37a500222ecedbddd 241 Pfam PF00696 Amino acid kinase family 11 219 9.0E-28 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 YP_2805 1da0de38868595c37a500222ecedbddd 241 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 239 3.4E-104 T 14-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 YP_2805 1da0de38868595c37a500222ecedbddd 241 Gene3D G3DSA:3.40.1160.10 3 241 9.8E-76 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YP_1275 bf1b4891dd913ca31bdb7c72738d5c70 274 Gene3D G3DSA:3.40.190.10 32 267 3.5E-87 T 14-10-2018 YP_1275 bf1b4891dd913ca31bdb7c72738d5c70 274 Gene3D G3DSA:3.40.190.10 111 219 3.5E-87 T 14-10-2018 YP_1275 bf1b4891dd913ca31bdb7c72738d5c70 274 PIRSF PIRSF002854 1 271 9.4E-96 T 14-10-2018 IPR004872 Lipoprotein NlpA family YP_1275 bf1b4891dd913ca31bdb7c72738d5c70 274 Pfam PF03180 NLPA lipoprotein 32 269 6.9E-77 T 14-10-2018 IPR004872 Lipoprotein NlpA family YP_1275 bf1b4891dd913ca31bdb7c72738d5c70 274 SUPERFAMILY SSF53850 32 270 1.99E-65 T 14-10-2018 YP_0061 3f5b8f2282362de4bd9290f9468c5515 341 Pfam PF00107 Zinc-binding dehydrogenase 174 301 4.9E-27 T 14-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 YP_0061 3f5b8f2282362de4bd9290f9468c5515 341 Gene3D G3DSA:3.90.180.10 21 328 1.1E-119 T 14-10-2018 YP_0061 3f5b8f2282362de4bd9290f9468c5515 341 SUPERFAMILY SSF51735 141 305 2.45E-37 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0061 3f5b8f2282362de4bd9290f9468c5515 341 Gene3D G3DSA:3.40.50.720 153 286 1.1E-119 T 14-10-2018 YP_0061 3f5b8f2282362de4bd9290f9468c5515 341 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 3 340 5.0E-183 T 14-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 YP_0061 3f5b8f2282362de4bd9290f9468c5515 341 SMART SM00829 12 338 1.2E-6 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 YP_0061 3f5b8f2282362de4bd9290f9468c5515 341 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 1 340 60.556 T 14-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 YP_0061 3f5b8f2282362de4bd9290f9468c5515 341 SUPERFAMILY SSF50129 1 173 4.26E-54 T 14-10-2018 IPR011032 GroES-like superfamily YP_0061 3f5b8f2282362de4bd9290f9468c5515 341 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 14-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 YP_0061 3f5b8f2282362de4bd9290f9468c5515 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 134 4.5E-32 T 14-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 YP_0877 b39a4f7fdb6392f9333f8d88b00e2edc 164 Gene3D G3DSA:1.20.1270.380 14 102 3.5E-48 T 14-10-2018 IPR038339 MatP, N-terminal domain superfamily YP_0877 b39a4f7fdb6392f9333f8d88b00e2edc 164 Gene3D G3DSA:1.10.1220.10 111 163 2.5E-34 T 14-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 YP_0877 b39a4f7fdb6392f9333f8d88b00e2edc 164 ProDom PD033720 UPF0268 YCBG DEHYDROGENASE PM0482 PBPRA1775 PLU1774 YPO1433/Y2737/YP0877 VV1664 HI1323 HD0178 14 144 3.0E-72 T 14-10-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 YP_0877 b39a4f7fdb6392f9333f8d88b00e2edc 164 Pfam PF06303 MatP N-terminal domain 15 98 2.8E-44 T 14-10-2018 IPR035087 MatP, N-terminal YP_0877 b39a4f7fdb6392f9333f8d88b00e2edc 164 Pfam PF17414 MatP C-terminal ribbon-helix-helix domain 101 160 1.4E-30 T 14-10-2018 IPR035375 MatP, C-terminal ribbon-helix-helix domain YP_0877 b39a4f7fdb6392f9333f8d88b00e2edc 164 Hamap MF_01073 Macrodomain Ter protein [matP]. 14 161 29.63 T 14-10-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 YP_4002 421b423cc449d561cbc47b60569a6df5 805 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 6 805 0.0 T 14-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_4002 421b423cc449d561cbc47b60569a6df5 805 Pfam PF01751 Toprim domain 420 532 5.2E-18 T 14-10-2018 IPR006171 TOPRIM domain YP_4002 421b423cc449d561cbc47b60569a6df5 805 Gene3D G3DSA:3.30.565.10 2 221 3.4E-97 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_4002 421b423cc449d561cbc47b60569a6df5 805 SMART SM00433 36 798 3.8E-281 T 14-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YP_4002 421b423cc449d561cbc47b60569a6df5 805 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 734 794 2.0E-29 T 14-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 YP_4002 421b423cc449d561cbc47b60569a6df5 805 SMART SM00387 32 176 6.0E-31 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_4002 421b423cc449d561cbc47b60569a6df5 805 ProSitePatterns PS00177 DNA topoisomerase II signature. 423 431 - T 14-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YP_4002 421b423cc449d561cbc47b60569a6df5 805 Gene3D G3DSA:3.40.50.670 707 803 6.4E-26 T 14-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YP_4002 421b423cc449d561cbc47b60569a6df5 805 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 3 805 109.687 T 14-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR01159 DNA gyrase subunit B signature 6 16 1.6E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR01159 DNA gyrase subunit B signature 361 375 1.6E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR01159 DNA gyrase subunit B signature 758 770 1.6E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR01159 DNA gyrase subunit B signature 774 790 1.6E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR01159 DNA gyrase subunit B signature 313 329 1.6E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR01159 DNA gyrase subunit B signature 182 197 1.6E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR01159 DNA gyrase subunit B signature 471 480 1.6E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR01159 DNA gyrase subunit B signature 197 210 1.6E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR01159 DNA gyrase subunit B signature 375 395 1.6E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR01159 DNA gyrase subunit B signature 221 243 1.6E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YP_4002 421b423cc449d561cbc47b60569a6df5 805 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 33 174 3.3E-22 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_4002 421b423cc449d561cbc47b60569a6df5 805 Gene3D G3DSA:3.10.20.690 593 684 2.3E-36 T 14-10-2018 YP_4002 421b423cc449d561cbc47b60569a6df5 805 Gene3D G3DSA:3.30.230.10 222 393 3.8E-75 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_4002 421b423cc449d561cbc47b60569a6df5 805 SUPERFAMILY SSF56719 395 796 1.12E-86 T 14-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 YP_4002 421b423cc449d561cbc47b60569a6df5 805 Pfam PF00204 DNA gyrase B 222 391 2.1E-59 T 14-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YP_4002 421b423cc449d561cbc47b60569a6df5 805 SUPERFAMILY SSF55874 5 221 1.44E-77 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_4002 421b423cc449d561cbc47b60569a6df5 805 SUPERFAMILY SSF54211 222 393 3.79E-62 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_4002 421b423cc449d561cbc47b60569a6df5 805 Gene3D G3DSA:3.40.50.670 399 572 2.8E-74 T 14-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR00418 DNA topoisomerase II family signature 269 282 1.9E-70 T 14-10-2018 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR00418 DNA topoisomerase II family signature 421 435 1.9E-70 T 14-10-2018 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR00418 DNA topoisomerase II family signature 737 753 1.9E-70 T 14-10-2018 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR00418 DNA topoisomerase II family signature 36 51 1.9E-70 T 14-10-2018 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR00418 DNA topoisomerase II family signature 114 128 1.9E-70 T 14-10-2018 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR00418 DNA topoisomerase II family signature 488 504 1.9E-70 T 14-10-2018 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR00418 DNA topoisomerase II family signature 71 84 1.9E-70 T 14-10-2018 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR00418 DNA topoisomerase II family signature 506 523 1.9E-70 T 14-10-2018 YP_4002 421b423cc449d561cbc47b60569a6df5 805 PRINTS PR00418 DNA topoisomerase II family signature 526 538 1.9E-70 T 14-10-2018 YP_0678 61dd096b0d4c0411ec1beb42254e51da 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 41 210 6.9E-14 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_0678 61dd096b0d4c0411ec1beb42254e51da 217 Gene3D G3DSA:1.10.3720.10 5 213 2.7E-46 T 14-10-2018 IPR035906 MetI-like superfamily YP_0678 61dd096b0d4c0411ec1beb42254e51da 217 SUPERFAMILY SSF161098 12 203 1.11E-39 T 14-10-2018 IPR035906 MetI-like superfamily YP_0678 61dd096b0d4c0411ec1beb42254e51da 217 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 106 2.5E-30 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YP_0848 c9db1f3a1a2359430423b0a20b0a6367 174 PIRSF PIRSF001338 10 173 4.9E-66 T 14-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 YP_0848 c9db1f3a1a2359430423b0a20b0a6367 174 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 15 168 32.224 T 14-10-2018 IPR033747 Class I PurE YP_0848 c9db1f3a1a2359430423b0a20b0a6367 174 Gene3D G3DSA:3.40.50.7700 1 174 8.3E-79 T 14-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 YP_0848 c9db1f3a1a2359430423b0a20b0a6367 174 SUPERFAMILY SSF52255 14 172 6.02E-66 T 14-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 YP_0848 c9db1f3a1a2359430423b0a20b0a6367 174 Pfam PF00731 AIR carboxylase 14 162 6.0E-63 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 YP_0848 c9db1f3a1a2359430423b0a20b0a6367 174 SMART SM01001 13 164 3.4E-100 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 YP_0848 c9db1f3a1a2359430423b0a20b0a6367 174 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 15 169 9.8E-65 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 YP_2469 78433cb415f6d0b1ce9fb4bd1a7738c6 231 Pfam PF05194 UreE urease accessory protein, C-terminal domain 85 220 3.1E-6 T 14-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 YP_2469 78433cb415f6d0b1ce9fb4bd1a7738c6 231 SUPERFAMILY SSF69287 3 79 5.49E-18 T 14-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily YP_2469 78433cb415f6d0b1ce9fb4bd1a7738c6 231 SMART SM00988 11 75 3.1E-16 T 14-10-2018 IPR004029 UreE urease accessory, N-terminal YP_2469 78433cb415f6d0b1ce9fb4bd1a7738c6 231 Gene3D G3DSA:2.60.260.20 1 79 9.8E-13 T 14-10-2018 YP_2469 78433cb415f6d0b1ce9fb4bd1a7738c6 231 PIRSF PIRSF036402 2 231 9.2E-36 T 14-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 YP_2469 78433cb415f6d0b1ce9fb4bd1a7738c6 231 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 159 14.838 T 14-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 YP_2469 78433cb415f6d0b1ce9fb4bd1a7738c6 231 Pfam PF02814 UreE urease accessory protein, N-terminal domain 15 73 5.9E-17 T 14-10-2018 IPR004029 UreE urease accessory, N-terminal YP_2306 6a887b09f683c844656f3ee2ad172dbe 562 Pfam PF08479 POTRA domain, ShlB-type 77 153 3.0E-25 T 14-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type YP_2306 6a887b09f683c844656f3ee2ad172dbe 562 Gene3D G3DSA:3.10.20.310 71 153 1.2E-7 T 14-10-2018 YP_2306 6a887b09f683c844656f3ee2ad172dbe 562 Gene3D G3DSA:2.40.160.50 186 562 7.7E-103 T 14-10-2018 YP_2306 6a887b09f683c844656f3ee2ad172dbe 562 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 213 526 2.6E-110 T 14-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal YP_2306 6a887b09f683c844656f3ee2ad172dbe 562 Pfam PF17287 POTRA domain 154 208 6.2E-20 T 14-10-2018 IPR035251 ShlB, POTRA domain YP_2306 6a887b09f683c844656f3ee2ad172dbe 562 PIRSF PIRSF029745 3 562 3.5E-163 T 14-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Pfam PF10385 RNA polymerase beta subunit external 1 domain 591 656 1.7E-26 T 14-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:2.40.270.10 1007 1242 2.7E-92 T 14-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1339 0.0 T 14-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1342 12.32 T 14-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:3.90.1800.10 1252 1306 8.1E-11 T 14-10-2018 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Pfam PF04563 RNA polymerase beta subunit 26 500 1.2E-57 T 14-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:3.90.1110.10 157 270 5.9E-28 T 14-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Pfam PF04565 RNA polymerase Rpb2, domain 3 513 580 1.5E-30 T 14-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 341 454 3.5E-16 T 14-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 151 239 1.4E-7 T 14-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:2.40.50.100 714 788 8.0E-32 T 14-10-2018 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:2.40.50.150 833 955 3.1E-44 T 14-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Pfam PF04560 RNA polymerase Rpb2, domain 7 1266 1340 3.4E-27 T 14-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:3.90.1100.10 442 624 1.9E-70 T 14-10-2018 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:3.90.1100.10 19 156 2.6E-49 T 14-10-2018 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Pfam PF00562 RNA polymerase Rpb2, domain 6 717 1264 1.4E-160 T 14-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:2.40.270.10 790 832 5.4E-7 T 14-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:3.90.1100.10 642 713 4.8E-21 T 14-10-2018 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 SUPERFAMILY SSF64484 11 1340 0.0 T 14-10-2018 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1063 1075 - T 14-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3110 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:3.90.1110.10 317 441 3.5E-36 T 14-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_1527 c26ed003e7c697eac8c476b36cfc6ab1 617 Gene3D G3DSA:1.10.150.20 562 617 2.1E-23 T 14-10-2018 YP_1527 c26ed003e7c697eac8c476b36cfc6ab1 617 Pfam PF14520 Helix-hairpin-helix domain 565 616 1.1E-7 T 14-10-2018 YP_1527 c26ed003e7c697eac8c476b36cfc6ab1 617 Gene3D G3DSA:3.30.420.340 384 559 1.9E-46 T 14-10-2018 IPR038476 UvrC homology region 2 superfamily YP_1527 c26ed003e7c697eac8c476b36cfc6ab1 617 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 15 596 1.4E-227 T 14-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 YP_1527 c26ed003e7c697eac8c476b36cfc6ab1 617 SUPERFAMILY SSF47781 528 616 1.05E-17 T 14-10-2018 IPR010994 RuvA domain 2-like YP_1527 c26ed003e7c697eac8c476b36cfc6ab1 617 Pfam PF01541 GIY-YIG catalytic domain 25 100 1.8E-12 T 14-10-2018 IPR000305 GIY-YIG endonuclease YP_1527 c26ed003e7c697eac8c476b36cfc6ab1 617 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 392 549 9.6E-46 T 14-10-2018 IPR001162 UvrC family homology region YP_1527 c26ed003e7c697eac8c476b36cfc6ab1 617 Gene3D G3DSA:4.10.860.10 195 248 2.4E-5 T 14-10-2018 YP_1527 c26ed003e7c697eac8c476b36cfc6ab1 617 SMART SM00278 563 582 34.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 YP_1527 c26ed003e7c697eac8c476b36cfc6ab1 617 SMART SM00278 595 614 0.12 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 YP_1527 c26ed003e7c697eac8c476b36cfc6ab1 617 Gene3D G3DSA:3.40.1440.10 12 109 7.4E-32 T 14-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 YP_1527 c26ed003e7c697eac8c476b36cfc6ab1 617 SUPERFAMILY SSF46600 198 250 4.18E-13 T 14-10-2018 IPR036876 UVR domain superfamily YP_1527 c26ed003e7c697eac8c476b36cfc6ab1 617 SMART SM00465 24 105 1.0E-22 T 14-10-2018 IPR000305 GIY-YIG endonuclease YP_1527 c26ed003e7c697eac8c476b36cfc6ab1 617 Hamap MF_00203 UvrABC system protein C [uvrC]. 11 614 30.078 T 14-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 YP_1527 c26ed003e7c697eac8c476b36cfc6ab1 617 SUPERFAMILY SSF82771 24 107 1.1E-24 T 14-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 YP_1527 c26ed003e7c697eac8c476b36cfc6ab1 617 Pfam PF02151 UvrB/uvrC motif 212 244 2.1E-9 T 14-10-2018 IPR001943 UVR domain GO:0005515 YP_3273 334e296de62edfe70a44389c9bd4d06a 258 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 9 226 3.4E-77 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 YP_3273 334e296de62edfe70a44389c9bd4d06a 258 Pfam PF00902 Sec-independent protein translocase protein (TatC) 12 221 1.3E-63 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 YP_3273 334e296de62edfe70a44389c9bd4d06a 258 ProSitePatterns PS01218 TatC family signature. 154 173 - T 14-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site YP_3273 334e296de62edfe70a44389c9bd4d06a 258 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 85 103 8.1E-50 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 YP_3273 334e296de62edfe70a44389c9bd4d06a 258 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 8 35 8.1E-50 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 YP_3273 334e296de62edfe70a44389c9bd4d06a 258 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 154 182 8.1E-50 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 YP_3273 334e296de62edfe70a44389c9bd4d06a 258 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 103 129 8.1E-50 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 YP_3273 334e296de62edfe70a44389c9bd4d06a 258 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 7 241 15.921 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 YP_0972 0aa849c470ed7db59e0c7f8510ef7ef8 77 Pfam PF13358 DDE superfamily endonuclease 2 70 7.8E-13 T 14-10-2018 IPR038717 Tc1-like transposase, DDE domain YP_0972 0aa849c470ed7db59e0c7f8510ef7ef8 77 Gene3D G3DSA:3.30.420.470 1 76 3.2E-6 T 14-10-2018 YP_0239 17b705669bc16a01b0d691933045135d 315 Gene3D G3DSA:3.10.25.10 210 315 1.5E-40 T 14-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YP_0239 17b705669bc16a01b0d691933045135d 315 Pfam PF00551 Formyl transferase 6 181 3.3E-50 T 14-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YP_0239 17b705669bc16a01b0d691933045135d 315 Pfam PF02911 Formyl transferase, C-terminal domain 207 304 1.8E-31 T 14-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YP_0239 17b705669bc16a01b0d691933045135d 315 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 311 1.1E-111 T 14-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 YP_0239 17b705669bc16a01b0d691933045135d 315 SUPERFAMILY SSF53328 5 207 2.62E-65 T 14-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YP_0239 17b705669bc16a01b0d691933045135d 315 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 136 159 - T 14-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YP_0239 17b705669bc16a01b0d691933045135d 315 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 5 307 36.621 T 14-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 YP_0239 17b705669bc16a01b0d691933045135d 315 Gene3D G3DSA:3.40.50.170 1 209 4.8E-88 T 14-10-2018 YP_0239 17b705669bc16a01b0d691933045135d 315 SUPERFAMILY SSF50486 208 309 1.88E-36 T 14-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 YP_1985 d354ddd5016ab183ce54c0b5c9f6fd87 124 Gene3D G3DSA:3.10.450.140 24 124 7.2E-43 T 14-10-2018 IPR036763 Putative dsDNA mimic superfamily YP_1985 d354ddd5016ab183ce54c0b5c9f6fd87 124 PIRSF PIRSF004916 16 124 3.5E-56 T 14-10-2018 IPR007376 dsDNA mimic, putative YP_1985 d354ddd5016ab183ce54c0b5c9f6fd87 124 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 22 124 4.0E-54 T 14-10-2018 IPR007376 dsDNA mimic, putative YP_1985 d354ddd5016ab183ce54c0b5c9f6fd87 124 SUPERFAMILY SSF102816 18 124 4.45E-52 T 14-10-2018 IPR036763 Putative dsDNA mimic superfamily YP_1985 d354ddd5016ab183ce54c0b5c9f6fd87 124 Pfam PF04269 Protein of unknown function, DUF440 23 124 6.4E-47 T 14-10-2018 IPR007376 dsDNA mimic, putative YP_1985 d354ddd5016ab183ce54c0b5c9f6fd87 124 Hamap MF_00680 UPF0263 protein YciU [yciU]. 20 124 34.84 T 14-10-2018 IPR007376 dsDNA mimic, putative YP_1130 4e1980ce2e51800decae29a373e9669e 625 Gene3D G3DSA:3.20.20.70 332 625 1.3E-43 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_1130 4e1980ce2e51800decae29a373e9669e 625 Pfam PF00294 pfkB family carbohydrate kinase 3 312 1.8E-41 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB YP_1130 4e1980ce2e51800decae29a373e9669e 625 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 1 320 1.2E-121 T 14-10-2018 IPR030830 5-Dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92 YP_1130 4e1980ce2e51800decae29a373e9669e 625 Gene3D G3DSA:2.20.150.10 4 99 3.1E-87 T 14-10-2018 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily KEGG: 00562+2.7.1.92 YP_1130 4e1980ce2e51800decae29a373e9669e 625 SUPERFAMILY SSF53613 1 319 5.61E-66 T 14-10-2018 IPR029056 Ribokinase-like YP_1130 4e1980ce2e51800decae29a373e9669e 625 Pfam PF09863 Uncharacterized protein conserved in bacteria (DUF2090) 315 622 4.5E-143 T 14-10-2018 IPR018659 Protein of unknown function DUF2090 YP_1130 4e1980ce2e51800decae29a373e9669e 625 Gene3D G3DSA:3.40.1190.20 1 302 3.1E-87 T 14-10-2018 IPR029056 Ribokinase-like YP_1130 4e1980ce2e51800decae29a373e9669e 625 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 264 277 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 YP_0312 9f3f53d6841cbdf7c2e7c5bf7e32c8e9 223 PIRSF PIRSF000370 1 223 7.1E-71 T 14-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 YP_0312 9f3f53d6841cbdf7c2e7c5bf7e32c8e9 223 SUPERFAMILY SSF102114 24 117 9.42E-7 T 14-10-2018 YP_0312 9f3f53d6841cbdf7c2e7c5bf7e32c8e9 223 TIGRFAM TIGR04322 rSAM_QueE_Ecoli: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 9 223 4.3E-112 T 14-10-2018 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 YP_0312 9f3f53d6841cbdf7c2e7c5bf7e32c8e9 223 Gene3D G3DSA:3.20.20.70 2 223 3.6E-56 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_0312 9f3f53d6841cbdf7c2e7c5bf7e32c8e9 223 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 3 223 36.581 T 14-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 YP_0312 9f3f53d6841cbdf7c2e7c5bf7e32c8e9 223 Pfam PF04055 Radical SAM superfamily 26 124 8.0E-9 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YP_0312 9f3f53d6841cbdf7c2e7c5bf7e32c8e9 223 Pfam PF13394 4Fe-4S single cluster domain 24 128 8.3E-13 T 14-10-2018 YP_0666 1f3449f4df09d44ac442fb6520652d19 178 Pfam PF01047 MarR family 61 120 6.2E-15 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YP_0666 1f3449f4df09d44ac442fb6520652d19 178 PRINTS PR00598 Bacterial regulatory protein MarR family signature 97 112 3.0E-22 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YP_0666 1f3449f4df09d44ac442fb6520652d19 178 PRINTS PR00598 Bacterial regulatory protein MarR family signature 80 96 3.0E-22 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YP_0666 1f3449f4df09d44ac442fb6520652d19 178 PRINTS PR00598 Bacterial regulatory protein MarR family signature 146 166 3.0E-22 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YP_0666 1f3449f4df09d44ac442fb6520652d19 178 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 132 3.0E-22 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YP_0666 1f3449f4df09d44ac442fb6520652d19 178 SUPERFAMILY SSF46785 29 173 2.48E-28 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0666 1f3449f4df09d44ac442fb6520652d19 178 SMART SM00347 54 156 5.0E-31 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YP_0666 1f3449f4df09d44ac442fb6520652d19 178 Gene3D G3DSA:1.10.10.10 14 172 6.5E-29 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0666 1f3449f4df09d44ac442fb6520652d19 178 ProSitePatterns PS01117 MarR-type HTH domain signature. 95 129 - T 14-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site YP_3290 1a5cbc0702113c26a2f389f0a9bd97bb 316 Hamap MF_00215 Pantothenate kinase [coaA]. 1 316 188.755 T 14-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 YP_3290 1a5cbc0702113c26a2f389f0a9bd97bb 316 Gene3D G3DSA:3.40.50.300 9 316 1.4E-94 T 14-10-2018 YP_3290 1a5cbc0702113c26a2f389f0a9bd97bb 316 SUPERFAMILY SSF52540 10 315 1.49E-76 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3290 1a5cbc0702113c26a2f389f0a9bd97bb 316 PIRSF PIRSF000545 1 316 6.0E-148 T 14-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 YP_3290 1a5cbc0702113c26a2f389f0a9bd97bb 316 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 10 316 9.0E-170 T 14-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 YP_3290 1a5cbc0702113c26a2f389f0a9bd97bb 316 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 90 244 5.8E-16 T 14-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 YP_2152 d9d73f2f3a8fb224dd8350383e4f796a 87 ProDom PD063639 YJBD CYTOPLASMIC STY4411 YPO2363 ECS5006 Y1969 1 87 5.0E-44 T 14-10-2018 IPR020317 Uncharacterised protein family YjbD YP_2152 d9d73f2f3a8fb224dd8350383e4f796a 87 Pfam PF11656 YjbD family (DUF3811) 1 87 2.7E-39 T 14-10-2018 IPR020317 Uncharacterised protein family YjbD YP_2251 24cc8bd450262f492c6a023ed3948c88 268 SUPERFAMILY SSF56752 1 256 1.44E-69 T 14-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 YP_2251 24cc8bd450262f492c6a023ed3948c88 268 Gene3D G3DSA:3.20.10.10 121 265 1.2E-51 T 14-10-2018 YP_2251 24cc8bd450262f492c6a023ed3948c88 268 Gene3D G3DSA:3.30.470.10 1 108 2.5E-28 T 14-10-2018 YP_2251 24cc8bd450262f492c6a023ed3948c88 268 Pfam PF01063 Amino-transferase class IV 24 247 1.7E-51 T 14-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 YP_2251 24cc8bd450262f492c6a023ed3948c88 268 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 3 262 6.3E-118 T 14-10-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 YP_2251 24cc8bd450262f492c6a023ed3948c88 268 ProSitePatterns PS00770 Aminotransferases class-IV signature. 173 202 - T 14-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 YP_2968 99a79401d280729f8795360ccbdf23e3 960 SUPERFAMILY SSF81301 535 822 1.05E-87 T 14-10-2018 YP_2968 99a79401d280729f8795360ccbdf23e3 960 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 43 285 1.5E-95 T 14-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 YP_2968 99a79401d280729f8795360ccbdf23e3 960 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 562 814 3.0E-98 T 14-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 YP_2968 99a79401d280729f8795360ccbdf23e3 960 Gene3D G3DSA:3.30.460.10 121 293 3.9E-67 T 14-10-2018 YP_2968 99a79401d280729f8795360ccbdf23e3 960 SUPERFAMILY SSF81593 824 952 7.61E-34 T 14-10-2018 YP_2968 99a79401d280729f8795360ccbdf23e3 960 Gene3D G3DSA:3.30.460.100 571 820 1.5E-98 T 14-10-2018 YP_2968 99a79401d280729f8795360ccbdf23e3 960 Gene3D G3DSA:1.20.120.330 294 449 6.2E-58 T 14-10-2018 YP_2968 99a79401d280729f8795360ccbdf23e3 960 Pfam PF08335 GlnD PII-uridylyltransferase 306 445 6.0E-48 T 14-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 YP_2968 99a79401d280729f8795360ccbdf23e3 960 Pfam PF08335 GlnD PII-uridylyltransferase 834 928 2.2E-10 T 14-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 YP_2968 99a79401d280729f8795360ccbdf23e3 960 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 36 954 19.763 T 14-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 YP_2968 99a79401d280729f8795360ccbdf23e3 960 SUPERFAMILY SSF81301 19 295 8.17E-94 T 14-10-2018 YP_2968 99a79401d280729f8795360ccbdf23e3 960 SUPERFAMILY SSF81593 296 445 5.57E-45 T 14-10-2018 YP_2968 99a79401d280729f8795360ccbdf23e3 960 Gene3D G3DSA:1.20.120.330 821 955 4.3E-47 T 14-10-2018 YP_2968 99a79401d280729f8795360ccbdf23e3 960 Gene3D G3DSA:1.20.120.1510 459 570 1.0E-30 T 14-10-2018 YP_2968 99a79401d280729f8795360ccbdf23e3 960 Gene3D G3DSA:1.10.4050.10 10 119 5.2E-32 T 14-10-2018 YP_2541 40d8ef279e3878998890e7a2268d51b3 483 Gene3D G3DSA:1.10.287.130 201 321 8.6E-18 T 14-10-2018 YP_2541 40d8ef279e3878998890e7a2268d51b3 483 SMART SM00388 257 325 2.2E-16 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_2541 40d8ef279e3878998890e7a2268d51b3 483 SUPERFAMILY SSF55874 329 478 4.71E-31 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2541 40d8ef279e3878998890e7a2268d51b3 483 SMART SM00387 368 480 4.0E-25 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_2541 40d8ef279e3878998890e7a2268d51b3 483 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 458 6.3E-8 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2541 40d8ef279e3878998890e7a2268d51b3 483 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 419 6.3E-8 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2541 40d8ef279e3878998890e7a2268d51b3 483 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 433 6.3E-8 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2541 40d8ef279e3878998890e7a2268d51b3 483 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 371 479 4.2E-15 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_2541 40d8ef279e3878998890e7a2268d51b3 483 Gene3D G3DSA:3.30.565.10 324 479 1.8E-30 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2541 40d8ef279e3878998890e7a2268d51b3 483 SUPERFAMILY SSF47384 240 321 4.51E-16 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_2541 40d8ef279e3878998890e7a2268d51b3 483 Pfam PF00512 His Kinase A (phospho-acceptor) domain 258 321 3.0E-13 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_1341 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_1341 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_1341 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_1341 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1341 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0032 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_0032 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_0032 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_0032 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_0032 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2829 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_2829 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_2829 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_2829 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_2829 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3378 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_3378 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_3378 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_3378 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_3378 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0650 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_0650 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_0650 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_0650 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_0650 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2095 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_2095 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_2095 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_2095 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_2095 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_1072 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_1072 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_1072 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_1072 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1072 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0086 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_0086 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_0086 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_0086 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_0086 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3524 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_3524 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_3524 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_3524 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_3524 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2184 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_2184 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_2184 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_2184 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_2184 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0872 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_0872 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_0872 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_0872 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_0872 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2886 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_2886 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_2886 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_2886 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_2886 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_1165 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_1165 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_1165 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_1165 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1165 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_1928 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_1928 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_1928 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_1928 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1928 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0546 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_0546 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_0546 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_0546 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_0546 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3795 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_3795 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_3795 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_3795 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_3795 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_pPCP01 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_pPCP01 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_pPCP01 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_pPCP01 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_pPCP01 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_1822 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_1822 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_1822 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_1822 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1822 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0402 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_0402 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_0402 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_0402 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_0402 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0444 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_0444 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_0444 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_0444 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_0444 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3293 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_3293 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_3293 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_3293 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_3293 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_pCD01 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_pCD01 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_pCD01 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_pCD01 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_pCD01 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2445 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_2445 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_2445 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_2445 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_2445 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_pMT001 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_pMT001 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_pMT001 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_pMT001 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_pMT001 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2763 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_2763 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_2763 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_2763 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_2763 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2530 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_2530 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_2530 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_2530 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_2530 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0250 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_0250 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_0250 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_0250 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_0250 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_pMT096 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_pMT096 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_pMT096 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_pMT096 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_pMT096 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3275 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_3275 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_3275 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_3275 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_3275 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_pMT074 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_pMT074 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_pMT074 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_pMT074 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_pMT074 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_1641 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_1641 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_1641 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_1641 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1641 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_1717 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_1717 009be5cb7decd0e67d576b9d27b64a1b 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_1717 009be5cb7decd0e67d576b9d27b64a1b 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_1717 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1717 009be5cb7decd0e67d576b9d27b64a1b 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_1612 af0504804082e0bdc0b9200acab6920a 316 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 40 48 3.9E-13 T 14-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 YP_1612 af0504804082e0bdc0b9200acab6920a 316 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 66 77 3.9E-13 T 14-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 YP_1612 af0504804082e0bdc0b9200acab6920a 316 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 109 123 3.9E-13 T 14-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 YP_1612 af0504804082e0bdc0b9200acab6920a 316 Gene3D G3DSA:3.40.50.1820 1 316 2.7E-111 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1612 af0504804082e0bdc0b9200acab6920a 316 PIRSF PIRSF006431 2 316 3.8E-139 T 14-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 YP_1612 af0504804082e0bdc0b9200acab6920a 316 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 3.4E-5 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YP_1612 af0504804082e0bdc0b9200acab6920a 316 PRINTS PR00111 Alpha/beta hydrolase fold signature 63 78 3.4E-5 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YP_1612 af0504804082e0bdc0b9200acab6920a 316 PRINTS PR00111 Alpha/beta hydrolase fold signature 123 136 3.4E-5 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YP_1612 af0504804082e0bdc0b9200acab6920a 316 Pfam PF00561 alpha/beta hydrolase fold 41 297 1.6E-30 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YP_1612 af0504804082e0bdc0b9200acab6920a 316 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 12 314 5.2E-127 T 14-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 YP_1612 af0504804082e0bdc0b9200acab6920a 316 SUPERFAMILY SSF53474 7 313 9.09E-60 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1364 a01c5543127cf624859501bb048874d2 766 SUPERFAMILY SSF51261 32 158 1.62E-6 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_1364 a01c5543127cf624859501bb048874d2 766 SUPERFAMILY SSF53955 511 761 2.08E-7 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_1364 a01c5543127cf624859501bb048874d2 766 Gene3D G3DSA:2.70.70.10 21 164 7.9E-13 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_1364 a01c5543127cf624859501bb048874d2 766 Pfam PF01551 Peptidase family M23 42 155 4.2E-6 T 14-10-2018 IPR016047 Peptidase M23 YP_3157 ec79fac78a3af44c4b9fc603c0aa6046 294 SUPERFAMILY SSF46785 2 112 4.92E-23 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3157 ec79fac78a3af44c4b9fc603c0aa6046 294 SUPERFAMILY SSF53850 90 294 7.84E-33 T 14-10-2018 YP_3157 ec79fac78a3af44c4b9fc603c0aa6046 294 Gene3D G3DSA:1.10.10.10 1 84 1.3E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3157 ec79fac78a3af44c4b9fc603c0aa6046 294 Pfam PF03466 LysR substrate binding domain 90 294 1.0E-38 T 14-10-2018 IPR005119 LysR, substrate-binding YP_3157 ec79fac78a3af44c4b9fc603c0aa6046 294 Gene3D G3DSA:3.40.190.10 166 270 1.9E-30 T 14-10-2018 YP_3157 ec79fac78a3af44c4b9fc603c0aa6046 294 Gene3D G3DSA:3.40.190.10 91 291 1.9E-30 T 14-10-2018 YP_3157 ec79fac78a3af44c4b9fc603c0aa6046 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.1E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3157 ec79fac78a3af44c4b9fc603c0aa6046 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.1E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3157 ec79fac78a3af44c4b9fc603c0aa6046 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.1E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3157 ec79fac78a3af44c4b9fc603c0aa6046 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 6.5E-20 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_0178 986b624e204104bd084c57516858a375 78 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 67 7.0E-27 T 14-10-2018 IPR010648 Uncharacterised protein family UPF0270 YP_0178 986b624e204104bd084c57516858a375 78 SUPERFAMILY SSF118001 1 72 2.35E-28 T 14-10-2018 IPR036685 YehU-like superfamily YP_0178 986b624e204104bd084c57516858a375 78 PIRSF PIRSF006169 1 76 2.4E-36 T 14-10-2018 IPR010648 Uncharacterised protein family UPF0270 YP_0178 986b624e204104bd084c57516858a375 78 Pfam PF06794 Uncharacterised protein family (UPF0270) 1 67 1.2E-33 T 14-10-2018 IPR010648 Uncharacterised protein family UPF0270 YP_0178 986b624e204104bd084c57516858a375 78 Gene3D G3DSA:1.10.10.610 1 74 7.9E-29 T 14-10-2018 IPR036685 YehU-like superfamily YP_0178 986b624e204104bd084c57516858a375 78 Hamap MF_00690 UPF0270 protein YheU [yheU]. 1 70 24.09 T 14-10-2018 IPR010648 Uncharacterised protein family UPF0270 YP_1755 762e26ce5290a3651bcab657a15e1a18 399 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 372 7.5E-123 T 14-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 YP_1755 762e26ce5290a3651bcab657a15e1a18 399 Pfam PF12704 MacB-like periplasmic core domain 27 209 5.2E-12 T 14-10-2018 IPR025857 MacB-like periplasmic core domain YP_1755 762e26ce5290a3651bcab657a15e1a18 399 Pfam PF02687 FtsX-like permease family 297 369 9.2E-8 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 YP_2203 b426c7c9df08d4cbb4613dc7dd624667 131 SUPERFAMILY SSF103481 45 127 6.93E-11 T 14-10-2018 YP_2203 b426c7c9df08d4cbb4613dc7dd624667 131 Gene3D G3DSA:1.10.3730.20 35 129 2.9E-6 T 14-10-2018 YP_2203 b426c7c9df08d4cbb4613dc7dd624667 131 Hamap MF_00538 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF [arnF]. 5 129 23.171 T 14-10-2018 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF YP_2604 350923cacb94c2bf04148533c074d060 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 4.3E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2604 350923cacb94c2bf04148533c074d060 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 4.3E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2604 350923cacb94c2bf04148533c074d060 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 4.3E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2604 350923cacb94c2bf04148533c074d060 292 SUPERFAMILY SSF46785 6 84 1.68E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_2604 350923cacb94c2bf04148533c074d060 292 Gene3D G3DSA:3.40.190.290 96 268 1.1E-20 T 14-10-2018 YP_2604 350923cacb94c2bf04148533c074d060 292 SUPERFAMILY SSF53850 95 288 6.88E-28 T 14-10-2018 YP_2604 350923cacb94c2bf04148533c074d060 292 Gene3D G3DSA:1.10.10.10 2 84 4.0E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2604 350923cacb94c2bf04148533c074d060 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 4.6E-17 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2604 350923cacb94c2bf04148533c074d060 292 Pfam PF03466 LysR substrate binding domain 91 286 1.9E-26 T 14-10-2018 IPR005119 LysR, substrate-binding YP_1734 a2ca0730e9259104521c6e627ee7b89e 870 Pfam PF13953 PapC C-terminal domain 788 849 5.8E-18 T 14-10-2018 IPR025949 PapC-like, C-terminal domain YP_1734 a2ca0730e9259104521c6e627ee7b89e 870 SUPERFAMILY SSF141729 63 181 4.84E-30 T 14-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 YP_1734 a2ca0730e9259104521c6e627ee7b89e 870 Gene3D G3DSA:2.60.40.2070 783 870 1.4E-12 T 14-10-2018 YP_1734 a2ca0730e9259104521c6e627ee7b89e 870 Pfam PF00577 Outer membrane usher protein 206 775 2.1E-167 T 14-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YP_1734 a2ca0730e9259104521c6e627ee7b89e 870 Gene3D G3DSA:2.60.40.2610 690 780 8.9E-30 T 14-10-2018 YP_1734 a2ca0730e9259104521c6e627ee7b89e 870 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 317 327 - T 14-10-2018 IPR018030 Fimbrial membrane usher, conserved site YP_1734 a2ca0730e9259104521c6e627ee7b89e 870 Gene3D G3DSA:2.60.40.3110 275 364 8.2E-38 T 14-10-2018 YP_1734 a2ca0730e9259104521c6e627ee7b89e 870 Pfam PF13954 PapC N-terminal domain 45 189 3.7E-38 T 14-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 YP_1734 a2ca0730e9259104521c6e627ee7b89e 870 Gene3D G3DSA:3.10.20.410 44 167 2.5E-26 T 14-10-2018 YP_2004 762d06f75ddca4d11d04a61655d4a2b7 333 SUPERFAMILY SSF47648 1 68 9.42E-17 T 14-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_2004 762d06f75ddca4d11d04a61655d4a2b7 333 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 4 332 38.945 T 14-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 YP_2004 762d06f75ddca4d11d04a61655d4a2b7 333 Pfam PF00591 Glycosyl transferase family, a/b domain 75 322 7.2E-99 T 14-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_2004 762d06f75ddca4d11d04a61655d4a2b7 333 Gene3D G3DSA:1.20.970.10 12 184 1.4E-124 T 14-10-2018 YP_2004 762d06f75ddca4d11d04a61655d4a2b7 333 SUPERFAMILY SSF52418 71 329 5.63E-92 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_2004 762d06f75ddca4d11d04a61655d4a2b7 333 Pfam PF02885 Glycosyl transferase family, helical bundle domain 4 63 1.0E-13 T 14-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_2004 762d06f75ddca4d11d04a61655d4a2b7 333 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 7 330 2.9E-126 T 14-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 YP_2004 762d06f75ddca4d11d04a61655d4a2b7 333 Gene3D G3DSA:3.40.1030.10 68 322 1.4E-124 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_1040 9a12b959891f482fcbbd1ad202f37751 290 SUPERFAMILY SSF52210 123 287 4.97E-56 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YP_1040 9a12b959891f482fcbbd1ad202f37751 290 Gene3D G3DSA:3.40.50.261 124 289 6.3E-76 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YP_1040 9a12b959891f482fcbbd1ad202f37751 290 SUPERFAMILY SSF51735 1 122 3.38E-45 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1040 9a12b959891f482fcbbd1ad202f37751 290 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 1.1E-40 T 14-10-2018 YP_1040 9a12b959891f482fcbbd1ad202f37751 290 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 1.1E-40 T 14-10-2018 YP_1040 9a12b959891f482fcbbd1ad202f37751 290 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 1.1E-40 T 14-10-2018 YP_1040 9a12b959891f482fcbbd1ad202f37751 290 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 1.1E-40 T 14-10-2018 YP_1040 9a12b959891f482fcbbd1ad202f37751 290 Gene3D G3DSA:3.40.50.720 2 123 8.2E-52 T 14-10-2018 YP_1040 9a12b959891f482fcbbd1ad202f37751 290 SMART SM00881 4 100 6.1E-39 T 14-10-2018 IPR003781 CoA-binding GO:0048037 YP_1040 9a12b959891f482fcbbd1ad202f37751 290 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 43.163 T 14-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YP_1040 9a12b959891f482fcbbd1ad202f37751 290 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 288 5.4E-146 T 14-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YP_1040 9a12b959891f482fcbbd1ad202f37751 290 Pfam PF00549 CoA-ligase 151 271 9.4E-21 T 14-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YP_1040 9a12b959891f482fcbbd1ad202f37751 290 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 14-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site YP_1040 9a12b959891f482fcbbd1ad202f37751 290 Pfam PF02629 CoA binding domain 6 99 1.0E-32 T 14-10-2018 IPR003781 CoA-binding GO:0048037 YP_1040 9a12b959891f482fcbbd1ad202f37751 290 PIRSF PIRSF001553 1 290 4.6E-134 T 14-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YP_1040 9a12b959891f482fcbbd1ad202f37751 290 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 14-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site YP_3141 2b09b2c874d857115d485cf0eb1c513d 496 Pfam PF00005 ABC transporter 272 425 9.4E-23 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3141 2b09b2c874d857115d485cf0eb1c513d 496 Gene3D G3DSA:3.40.50.300 2 237 3.0E-56 T 14-10-2018 YP_3141 2b09b2c874d857115d485cf0eb1c513d 496 SUPERFAMILY SSF52540 263 484 6.23E-50 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3141 2b09b2c874d857115d485cf0eb1c513d 496 SMART SM00382 29 217 1.2E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3141 2b09b2c874d857115d485cf0eb1c513d 496 SMART SM00382 280 474 1.1E-4 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3141 2b09b2c874d857115d485cf0eb1c513d 496 Pfam PF00005 ABC transporter 20 169 4.1E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3141 2b09b2c874d857115d485cf0eb1c513d 496 Gene3D G3DSA:3.40.50.300 239 493 1.4E-49 T 14-10-2018 YP_3141 2b09b2c874d857115d485cf0eb1c513d 496 ProSitePatterns PS00211 ABC transporters family signature. 398 412 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3141 2b09b2c874d857115d485cf0eb1c513d 496 SUPERFAMILY SSF52540 3 227 6.41E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 ProSitePatterns PS00436 Peroxidases active site signature. 108 119 - T 14-10-2018 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 270 280 - T 14-10-2018 IPR019793 Peroxidases heam-ligand binding site Reactome: R-HSA-2408557 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 Gene3D G3DSA:1.10.420.20 208 409 4.9E-201 T 14-10-2018 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 31 749 0.0 T 14-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 278 301 4.5E-38 T 14-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 70 83 4.5E-38 T 14-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 85 110 4.5E-38 T 14-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 44 66 4.5E-38 T 14-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 492 518 4.5E-38 T 14-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 PRINTS PR00458 Haem peroxidase superfamily signature 654 669 6.3E-17 T 14-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 PRINTS PR00458 Haem peroxidase superfamily signature 270 285 6.3E-17 T 14-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 PRINTS PR00458 Haem peroxidase superfamily signature 168 185 6.3E-17 T 14-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 PRINTS PR00458 Haem peroxidase superfamily signature 186 198 6.3E-17 T 14-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 PRINTS PR00458 Haem peroxidase superfamily signature 108 122 6.3E-17 T 14-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 Pfam PF00141 Peroxidase 95 407 1.1E-50 T 14-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 Pfam PF00141 Peroxidase 415 723 1.9E-36 T 14-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 SUPERFAMILY SSF48113 442 748 3.09E-107 T 14-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 Gene3D G3DSA:1.10.520.10 445 748 1.8E-138 T 14-10-2018 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 Gene3D G3DSA:1.10.420.10 600 724 1.8E-138 T 14-10-2018 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 SUPERFAMILY SSF48113 45 442 1.28E-141 T 14-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 Hamap MF_01961 Catalase-peroxidase [katG]. 27 749 40.217 T 14-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 YP_0367 0ac3a4fbec9049acba0e5df961b977a9 751 Gene3D G3DSA:1.10.520.10 42 442 4.9E-201 T 14-10-2018 YP_3167 2efc86a0424d6cc9983f2edaf8d1abeb 875 Pfam PF13953 PapC C-terminal domain 797 857 7.9E-18 T 14-10-2018 IPR025949 PapC-like, C-terminal domain YP_3167 2efc86a0424d6cc9983f2edaf8d1abeb 875 Gene3D G3DSA:3.10.20.410 40 180 1.5E-22 T 14-10-2018 YP_3167 2efc86a0424d6cc9983f2edaf8d1abeb 875 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 335 345 - T 14-10-2018 IPR018030 Fimbrial membrane usher, conserved site YP_3167 2efc86a0424d6cc9983f2edaf8d1abeb 875 Pfam PF13954 PapC N-terminal domain 42 203 1.2E-36 T 14-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 YP_3167 2efc86a0424d6cc9983f2edaf8d1abeb 875 Gene3D G3DSA:2.60.40.2070 795 875 5.5E-18 T 14-10-2018 YP_3167 2efc86a0424d6cc9983f2edaf8d1abeb 875 Gene3D G3DSA:2.60.40.3110 293 382 7.1E-34 T 14-10-2018 YP_3167 2efc86a0424d6cc9983f2edaf8d1abeb 875 SUPERFAMILY SSF141729 41 180 2.09E-24 T 14-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 YP_3167 2efc86a0424d6cc9983f2edaf8d1abeb 875 Gene3D G3DSA:2.60.40.2610 711 793 6.2E-23 T 14-10-2018 YP_3167 2efc86a0424d6cc9983f2edaf8d1abeb 875 Pfam PF00577 Outer membrane usher protein 222 788 2.8E-140 T 14-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 Pfam PF00958 GMP synthase C terminal domain 433 524 6.7E-44 T 14-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 Gene3D G3DSA:3.40.50.880 9 206 9.6E-54 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 213 525 3.1E-154 T 14-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 Pfam PF02540 NAD synthase 223 254 6.6E-6 T 14-10-2018 IPR022310 NAD/GMP synthase YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 SUPERFAMILY SSF52317 4 204 1.1E-54 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 PRINTS PR00097 Anthranilate synthase component II signature 10 24 4.4E-6 T 14-10-2018 YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 PRINTS PR00097 Anthranilate synthase component II signature 177 190 4.4E-6 T 14-10-2018 YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 PRINTS PR00097 Anthranilate synthase component II signature 81 92 4.4E-6 T 14-10-2018 YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 525 55.595 T 14-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 1.5E-6 T 14-10-2018 YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 1.5E-6 T 14-10-2018 YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 177 190 1.5E-6 T 14-10-2018 YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 SUPERFAMILY SSF52402 197 420 1.87E-55 T 14-10-2018 YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 SUPERFAMILY SSF54810 405 525 1.57E-51 T 14-10-2018 YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 Pfam PF00117 Glutamine amidotransferase class-I 12 199 4.4E-38 T 14-10-2018 IPR017926 Glutamine amidotransferase YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 Gene3D G3DSA:3.40.50.620 209 405 1.2E-72 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 Gene3D G3DSA:3.30.300.10 406 525 1.2E-51 T 14-10-2018 YP_2736 5f76fa2b14d8e1e1ce9a83b599e1f931 525 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 205 1.7E-80 T 14-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 YP_2229 035913bb5bca16b7ac6841736e65ca78 294 SUPERFAMILY SSF81345 5 260 1.11E-38 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_2229 035913bb5bca16b7ac6841736e65ca78 294 Pfam PF00950 ABC 3 transport family 10 265 2.9E-90 T 14-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 YP_2229 035913bb5bca16b7ac6841736e65ca78 294 Gene3D G3DSA:1.10.3470.10 38 266 1.3E-9 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 Pfam PF00702 haloacid dehalogenase-like hydrolase 365 653 4.5E-19 T 14-10-2018 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 Pfam PF00122 E1-E2 ATPase 141 349 3.9E-42 T 14-10-2018 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 SUPERFAMILY SSF81665 25 896 1.44E-102 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 Gene3D G3DSA:3.40.1110.10 382 545 2.0E-52 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 Pfam PF00689 Cation transporting ATPase, C-terminus 722 890 1.2E-17 T 14-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 SUPERFAMILY SSF81660 364 547 3.14E-35 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 Gene3D G3DSA:1.20.1110.10 73 145 2.6E-5 T 14-10-2018 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 SUPERFAMILY SSF56784 532 682 7.41E-35 T 14-10-2018 IPR036412 HAD-like superfamily YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 SMART SM00831 22 95 2.9E-17 T 14-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 Gene3D G3DSA:1.20.1110.10 684 806 6.9E-9 T 14-10-2018 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 Gene3D G3DSA:1.20.1110.10 236 381 1.9E-28 T 14-10-2018 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 Pfam PF00690 Cation transporter/ATPase, N-terminus 24 90 1.1E-15 T 14-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 Gene3D G3DSA:3.40.50.1000 546 683 2.1E-29 T 14-10-2018 IPR023214 HAD superfamily YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 371 377 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 Gene3D G3DSA:2.70.150.20 146 235 1.4E-14 T 14-10-2018 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 267 406 1.6E-19 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 613 728 1.0E-27 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 12 898 0.0 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 SUPERFAMILY SSF81653 158 269 7.72E-26 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 PRINTS PR01836 Magnesium-transporting ATPase signature 747 760 1.3E-88 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 PRINTS PR01836 Magnesium-transporting ATPase signature 299 318 1.3E-88 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 PRINTS PR01836 Magnesium-transporting ATPase signature 697 712 1.3E-88 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 PRINTS PR01836 Magnesium-transporting ATPase signature 802 823 1.3E-88 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 PRINTS PR01836 Magnesium-transporting ATPase signature 282 298 1.3E-88 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 PRINTS PR01836 Magnesium-transporting ATPase signature 767 783 1.3E-88 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 PRINTS PR01836 Magnesium-transporting ATPase signature 403 416 1.3E-88 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 PRINTS PR01836 Magnesium-transporting ATPase signature 852 873 1.3E-88 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YP_1791 5b2cd6d1516877c8e09d866a58ce84a9 899 PRINTS PR01836 Magnesium-transporting ATPase signature 715 726 1.3E-88 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YP_0031 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0031 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0031 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0031 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0031 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_0031 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0031 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_0681 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0681 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0681 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0681 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0681 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_0681 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0681 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_0249 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0249 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0249 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0249 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0249 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_0249 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0249 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_3617 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3617 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3617 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3617 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3617 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_3617 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_3617 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_2885 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2885 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2885 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2885 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2885 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_2885 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_2885 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_0871 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0871 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0871 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0871 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0871 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_0871 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0871 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_1491 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1491 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1491 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1491 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1491 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_1491 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_1491 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_2185 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2185 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2185 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2185 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2185 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_2185 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_2185 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_3523 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3523 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3523 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3523 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3523 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_3523 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_3523 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_2830 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2830 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2830 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2830 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2830 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_2830 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_2830 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_3796 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3796 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3796 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3796 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3796 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_3796 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_3796 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_1929 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1929 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1929 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1929 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1929 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_1929 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_1929 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_0547 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0547 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0547 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0547 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0547 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_0547 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0547 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_1821 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1821 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1821 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1821 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1821 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_1821 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_1821 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_1166 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1166 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1166 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1166 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1166 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_1166 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_1166 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_pPCP02 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_pPCP02 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pPCP02 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_pPCP02 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_pPCP02 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_pPCP02 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_pPCP02 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_pMT002 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_pMT002 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pMT002 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_pMT002 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_pMT002 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_pMT002 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_pMT002 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_pCD02 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_pCD02 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pCD02 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_pCD02 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_pCD02 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_pCD02 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_pCD02 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_2444 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2444 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2444 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2444 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2444 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_2444 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_2444 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_2764 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2764 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2764 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2764 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2764 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_2764 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_2764 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_2531 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2531 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2531 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2531 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2531 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_2531 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_2531 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_0649 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0649 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0649 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0649 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0649 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_0649 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0649 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_0401 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0401 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0401 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0401 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0401 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_0401 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0401 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_pMT095 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_pMT095 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pMT095 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_pMT095 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_pMT095 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_pMT095 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_pMT095 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_pMT075 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_pMT075 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pMT075 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_pMT075 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_pMT075 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_pMT075 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_pMT075 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_1716 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1716 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1716 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1716 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1716 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_1716 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_1716 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_3294 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3294 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3294 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3294 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3294 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_3294 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_3294 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_1642 4225e7fa9345953ea456e809caf3ccb5 260 SMART SM00382 102 236 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1642 4225e7fa9345953ea456e809caf3ccb5 260 SUPERFAMILY SSF52540 71 255 7.63E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1642 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 194 208 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1642 4225e7fa9345953ea456e809caf3ccb5 260 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 106 124 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1642 4225e7fa9345953ea456e809caf3ccb5 260 Pfam PF01695 IstB-like ATP binding protein 57 236 2.4E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_1642 4225e7fa9345953ea456e809caf3ccb5 260 PIRSF PIRSF003073 2 258 8.2E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_1642 4225e7fa9345953ea456e809caf3ccb5 260 Gene3D G3DSA:3.40.50.300 66 253 1.6E-49 T 14-10-2018 YP_1902 91ffbb1db21c6b03b93e2eeb5ab0450a 261 Pfam PF00950 ABC 3 transport family 1 255 1.6E-84 T 14-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 YP_1902 91ffbb1db21c6b03b93e2eeb5ab0450a 261 Gene3D G3DSA:1.10.3470.10 31 260 1.8E-10 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_1902 91ffbb1db21c6b03b93e2eeb5ab0450a 261 SUPERFAMILY SSF81345 3 255 1.05E-41 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_3537 e79d8faf251553aadd165e551008790f 408 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 12 389 1.2E-161 T 14-10-2018 YP_3537 e79d8faf251553aadd165e551008790f 408 Pfam PF04055 Radical SAM superfamily 19 188 2.1E-14 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YP_3537 e79d8faf251553aadd165e551008790f 408 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 281 370 3.0E-19 T 14-10-2018 IPR023885 4Fe4S-binding SPASM domain YP_3537 e79d8faf251553aadd165e551008790f 408 SUPERFAMILY SSF102114 18 351 1.23E-37 T 14-10-2018 YP_3537 e79d8faf251553aadd165e551008790f 408 Pfam PF13186 Iron-sulfur cluster-binding domain 282 342 1.7E-7 T 14-10-2018 IPR023885 4Fe4S-binding SPASM domain YP_3537 e79d8faf251553aadd165e551008790f 408 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 173 404 3.0E-15 T 14-10-2018 YP_3537 e79d8faf251553aadd165e551008790f 408 Gene3D G3DSA:3.20.20.70 9 392 2.6E-110 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3281 c0c7890d8dd735cf219f4050491bb19c 387 SUPERFAMILY SSF53901 262 386 2.98E-44 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_3281 c0c7890d8dd735cf219f4050491bb19c 387 PIRSF PIRSF000429 1 387 3.4E-130 T 14-10-2018 IPR002155 Thiolase GO:0016747 YP_3281 c0c7890d8dd735cf219f4050491bb19c 387 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 14-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 YP_3281 c0c7890d8dd735cf219f4050491bb19c 387 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 1 387 60.34 T 14-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 YP_3281 c0c7890d8dd735cf219f4050491bb19c 387 Pfam PF00108 Thiolase, N-terminal domain 4 254 1.5E-81 T 14-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 YP_3281 c0c7890d8dd735cf219f4050491bb19c 387 ProSitePatterns PS00099 Thiolases active site. 368 381 - T 14-10-2018 IPR020610 Thiolase, active site GO:0016747 YP_3281 c0c7890d8dd735cf219f4050491bb19c 387 SUPERFAMILY SSF53901 1 258 1.07E-78 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_3281 c0c7890d8dd735cf219f4050491bb19c 387 Pfam PF02803 Thiolase, C-terminal domain 262 386 6.2E-49 T 14-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 YP_3281 c0c7890d8dd735cf219f4050491bb19c 387 Gene3D G3DSA:3.40.47.10 4 267 9.1E-152 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_3281 c0c7890d8dd735cf219f4050491bb19c 387 ProSitePatterns PS00737 Thiolases signature 2. 333 349 - T 14-10-2018 IPR020613 Thiolase, conserved site GO:0016747 YP_3281 c0c7890d8dd735cf219f4050491bb19c 387 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 385 6.8E-141 T 14-10-2018 IPR002155 Thiolase GO:0016747 YP_3281 c0c7890d8dd735cf219f4050491bb19c 387 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 3 386 1.7E-224 T 14-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 YP_3281 c0c7890d8dd735cf219f4050491bb19c 387 Gene3D G3DSA:3.40.47.10 134 381 9.1E-152 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_0630 3aa923efaceffc43c0b26101c1d8fbb5 144 ProSitePatterns PS01087 Radical activating enzymes signature. 4 25 - T 14-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 YP_0630 3aa923efaceffc43c0b26101c1d8fbb5 144 Pfam PF13353 4Fe-4S single cluster domain 2 141 2.4E-51 T 14-10-2018 YP_0630 3aa923efaceffc43c0b26101c1d8fbb5 144 SUPERFAMILY SSF102114 14 101 1.45E-6 T 14-10-2018 YP_0630 3aa923efaceffc43c0b26101c1d8fbb5 144 TIGRFAM TIGR02491 NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein 1 141 1.9E-59 T 14-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 YP_0630 3aa923efaceffc43c0b26101c1d8fbb5 144 PIRSF PIRSF000368 1 144 1.2E-55 T 14-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 YP_0630 3aa923efaceffc43c0b26101c1d8fbb5 144 Gene3D G3DSA:3.20.20.70 1 144 1.1E-19 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_0600 fc2c6335e0ef42dee41c3077c515d52c 386 SUPERFAMILY SSF111369 44 290 5.36E-79 T 14-10-2018 YP_0600 fc2c6335e0ef42dee41c3077c515d52c 386 Gene3D G3DSA:1.10.287.470 91 164 1.6E-100 T 14-10-2018 YP_0600 fc2c6335e0ef42dee41c3077c515d52c 386 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 32 365 2.0E-81 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YP_0600 fc2c6335e0ef42dee41c3077c515d52c 386 Gene3D G3DSA:2.40.30.170 42 293 1.6E-100 T 14-10-2018 YP_0600 fc2c6335e0ef42dee41c3077c515d52c 386 Gene3D G3DSA:2.40.50.100 56 200 1.6E-100 T 14-10-2018 YP_0600 fc2c6335e0ef42dee41c3077c515d52c 386 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 57 283 4.9E-14 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_0600 fc2c6335e0ef42dee41c3077c515d52c 386 Gene3D G3DSA:2.40.420.20 294 363 1.6E-100 T 14-10-2018 YP_1542 87516650ca35cb9273609362b0a47174 1318 SUPERFAMILY SSF51730 258 613 2.31E-123 T 14-10-2018 IPR029041 FAD-linked oxidoreductase-like YP_1542 87516650ca35cb9273609362b0a47174 1318 SUPERFAMILY SSF53720 630 1108 1.96E-129 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YP_1542 87516650ca35cb9273609362b0a47174 1318 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 878 885 - T 14-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 YP_1542 87516650ca35cb9273609362b0a47174 1318 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 606 1109 3.4E-250 T 14-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 YP_1542 87516650ca35cb9273609362b0a47174 1318 Gene3D G3DSA:1.10.1220.10 6 47 2.1E-23 T 14-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 YP_1542 87516650ca35cb9273609362b0a47174 1318 SUPERFAMILY SSF47598 1 40 3.22E-9 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 YP_1542 87516650ca35cb9273609362b0a47174 1318 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 144 255 1.8E-45 T 14-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 YP_1542 87516650ca35cb9273609362b0a47174 1318 PIRSF PIRSF000197 70 1318 0.0 T 14-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 YP_1542 87516650ca35cb9273609362b0a47174 1318 SUPERFAMILY SSF81935 84 257 1.09E-65 T 14-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 YP_1542 87516650ca35cb9273609362b0a47174 1318 Gene3D G3DSA:3.40.605.10 631 1109 7.5E-145 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YP_1542 87516650ca35cb9273609362b0a47174 1318 Gene3D G3DSA:3.40.309.10 881 1078 7.5E-145 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YP_1542 87516650ca35cb9273609362b0a47174 1318 Pfam PF00171 Aldehyde dehydrogenase family 654 1102 1.1E-114 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YP_1542 87516650ca35cb9273609362b0a47174 1318 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 906 917 - T 14-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 YP_1542 87516650ca35cb9273609362b0a47174 1318 Gene3D G3DSA:3.20.20.220 216 606 6.4E-161 T 14-10-2018 YP_1542 87516650ca35cb9273609362b0a47174 1318 Gene3D G3DSA:1.20.5.550 83 134 1.4E-29 T 14-10-2018 IPR024090 Proline dehydrogenase PutA, domain I GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 YP_1542 87516650ca35cb9273609362b0a47174 1318 Pfam PF01619 Proline dehydrogenase 266 565 6.3E-100 T 14-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 YP_3138 641800755b73b59fc224b7b03aaff18e 653 Gene3D G3DSA:2.170.130.10 54 184 4.3E-39 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YP_3138 641800755b73b59fc224b7b03aaff18e 653 Pfam PF07715 TonB-dependent Receptor Plug Domain 72 179 8.5E-31 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain YP_3138 641800755b73b59fc224b7b03aaff18e 653 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 636 653 - T 14-10-2018 IPR010917 TonB-dependent receptor, conserved site YP_3138 641800755b73b59fc224b7b03aaff18e 653 Gene3D G3DSA:2.40.170.20 185 653 2.4E-156 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_3138 641800755b73b59fc224b7b03aaff18e 653 SUPERFAMILY SSF56935 59 653 1.1E-122 T 14-10-2018 YP_3138 641800755b73b59fc224b7b03aaff18e 653 TIGRFAM TIGR01779 TonB-B12: TonB-dependent vitamin B12 receptor 31 653 4.5E-230 T 14-10-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0015420|GO:0015889|GO:0016020 YP_3138 641800755b73b59fc224b7b03aaff18e 653 Hamap MF_01531 Vitamin B12 transporter BtuB [btuB]. 31 653 36.053 T 14-10-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0015420|GO:0015889|GO:0016020 YP_3138 641800755b73b59fc224b7b03aaff18e 653 Pfam PF00593 TonB dependent receptor 267 652 1.2E-46 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YP_0229 27f9ad9f09ec293cd83e76776f5acb21 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 8.3E-33 T 14-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0229 27f9ad9f09ec293cd83e76776f5acb21 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 3.6E-52 T 14-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0229 27f9ad9f09ec293cd83e76776f5acb21 118 Gene3D G3DSA:1.10.8.50 1 71 7.0E-27 T 14-10-2018 YP_0229 27f9ad9f09ec293cd83e76776f5acb21 118 PIRSF PIRSF002134 1 118 7.2E-41 T 14-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0229 27f9ad9f09ec293cd83e76776f5acb21 118 SUPERFAMILY SSF46946 2 114 2.06E-45 T 14-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 YP_0229 27f9ad9f09ec293cd83e76776f5acb21 118 Gene3D G3DSA:4.10.910.10 72 118 2.3E-25 T 14-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0229 27f9ad9f09ec293cd83e76776f5acb21 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 14-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0229 27f9ad9f09ec293cd83e76776f5acb21 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 27.012 T 14-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_2365 2df207d132bf2e6dc2b11adf3f1bac31 225 SUPERFAMILY SSF56770 43 190 5.1E-64 T 14-10-2018 YP_2365 2df207d132bf2e6dc2b11adf3f1bac31 225 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 28 182 41.895 T 14-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2365 2df207d132bf2e6dc2b11adf3f1bac31 225 Gene3D G3DSA:3.40.50.12280 26 193 6.5E-70 T 14-10-2018 YP_2365 2df207d132bf2e6dc2b11adf3f1bac31 225 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 69 175 5.2E-22 T 14-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2365 2df207d132bf2e6dc2b11adf3f1bac31 225 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 149 165 - T 14-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2365 2df207d132bf2e6dc2b11adf3f1bac31 225 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 46 183 9.4E-69 T 14-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_0127 f0683d64d305c20720001984c16e6ad6 698 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 103 690 2.5E-243 T 14-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 YP_0127 f0683d64d305c20720001984c16e6ad6 698 Gene3D G3DSA:3.20.20.80 144 689 3.6E-124 T 14-10-2018 YP_0127 f0683d64d305c20720001984c16e6ad6 698 Pfam PF02446 4-alpha-glucanotransferase 151 669 2.3E-131 T 14-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 YP_0127 f0683d64d305c20720001984c16e6ad6 698 SUPERFAMILY SSF51445 145 687 1.8E-148 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 SUPERFAMILY SSF55874 6 216 7.46E-69 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 SUPERFAMILY SSF54211 218 383 3.03E-46 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 SMART SM00387 28 174 1.2E-19 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 Gene3D G3DSA:3.40.50.670 391 624 4.4E-94 T 14-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 Pfam PF00204 DNA gyrase B 219 385 1.5E-39 T 14-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 Pfam PF01751 Toprim domain 414 523 3.3E-12 T 14-10-2018 IPR006171 TOPRIM domain YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 557 621 6.3E-24 T 14-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 3 629 47.062 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 SMART SM00433 35 625 6.0E-209 T 14-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 5 626 0.0 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 110 124 8.8E-59 T 14-10-2018 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 480 496 8.8E-59 T 14-10-2018 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 67 80 8.8E-59 T 14-10-2018 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 267 280 8.8E-59 T 14-10-2018 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 32 47 8.8E-59 T 14-10-2018 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 518 530 8.8E-59 T 14-10-2018 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 498 515 8.8E-59 T 14-10-2018 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 561 577 8.8E-59 T 14-10-2018 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 415 429 8.8E-59 T 14-10-2018 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 193 214 4.4E-154 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 363 388 4.4E-154 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 136 150 4.4E-154 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 295 311 4.4E-154 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 504 520 4.4E-154 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 538 560 4.4E-154 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 27 40 4.4E-154 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 150 165 4.4E-154 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 312 327 4.4E-154 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 239 262 4.4E-154 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 470 482 4.4E-154 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 449 470 4.4E-154 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 175 192 4.4E-154 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 339 362 4.4E-154 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 Gene3D G3DSA:3.30.565.10 4 216 5.7E-76 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 SUPERFAMILY SSF56719 389 622 2.28E-77 T 14-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 ProSitePatterns PS00177 DNA topoisomerase II signature. 417 425 - T 14-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 Gene3D G3DSA:3.30.230.10 217 390 8.9E-59 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_2983 1761fbaf7278fb225fc610e65dbc2dee 631 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 171 2.6E-16 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_1376 151b228486a9e66123a066373597243d 361 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 21 319 1.4E-69 T 14-10-2018 IPR010732 Type VI secretion, TssG-like YP_1376 151b228486a9e66123a066373597243d 361 Pfam PF06996 Type VI secretion, TssG 22 319 1.1E-79 T 14-10-2018 IPR010732 Type VI secretion, TssG-like YP_0025 3ef70901c361257cfd740054cf84ed61 469 Gene3D G3DSA:3.10.20.70 2 104 1.0E-41 T 14-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 YP_0025 3ef70901c361257cfd740054cf84ed61 469 Pfam PF00120 Glutamine synthetase, catalytic domain 103 466 2.4E-137 T 14-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 YP_0025 3ef70901c361257cfd740054cf84ed61 469 SMART SM01230 102 379 1.4E-148 T 14-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 YP_0025 3ef70901c361257cfd740054cf84ed61 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 7.0E-32 T 14-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 YP_0025 3ef70901c361257cfd740054cf84ed61 469 SUPERFAMILY SSF54368 3 100 1.19E-36 T 14-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 YP_0025 3ef70901c361257cfd740054cf84ed61 469 Gene3D G3DSA:3.30.590.10 105 457 1.8E-149 T 14-10-2018 YP_0025 3ef70901c361257cfd740054cf84ed61 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 14-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 YP_0025 3ef70901c361257cfd740054cf84ed61 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 468 3.7E-215 T 14-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 YP_0025 3ef70901c361257cfd740054cf84ed61 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 14-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 YP_0025 3ef70901c361257cfd740054cf84ed61 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 14-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 YP_0025 3ef70901c361257cfd740054cf84ed61 469 SUPERFAMILY SSF55931 102 468 7.65E-138 T 14-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 YP_4003 66630e9fbaef37b96850c2fe3f06b8ec 440 ProSitePatterns PS00618 RecF protein signature 2. 377 395 - T 14-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 YP_4003 66630e9fbaef37b96850c2fe3f06b8ec 440 Pfam PF02463 RecF/RecN/SMC N terminal domain 82 421 1.7E-38 T 14-10-2018 IPR003395 RecF/RecN/SMC, N-terminal YP_4003 66630e9fbaef37b96850c2fe3f06b8ec 440 SUPERFAMILY SSF52540 80 419 3.52E-39 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_4003 66630e9fbaef37b96850c2fe3f06b8ec 440 Gene3D G3DSA:1.20.1050.90 199 376 3.5E-79 T 14-10-2018 YP_4003 66630e9fbaef37b96850c2fe3f06b8ec 440 Gene3D G3DSA:3.40.50.300 87 410 3.5E-79 T 14-10-2018 YP_4003 66630e9fbaef37b96850c2fe3f06b8ec 440 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 80 440 92.562 T 14-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 YP_4003 66630e9fbaef37b96850c2fe3f06b8ec 440 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 80 434 5.6E-132 T 14-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 YP_4003 66630e9fbaef37b96850c2fe3f06b8ec 440 ProSitePatterns PS00617 RecF protein signature 1. 196 216 - T 14-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 YP_2098 5ac9aa884374b307cbfa78224d894ffd 169 SUPERFAMILY SSF143422 18 146 3.27E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2098 5ac9aa884374b307cbfa78224d894ffd 169 Gene3D G3DSA:3.30.70.1290 16 149 2.9E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2098 5ac9aa884374b307cbfa78224d894ffd 169 SMART SM01321 28 146 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2098 5ac9aa884374b307cbfa78224d894ffd 169 Pfam PF01797 Transposase IS200 like 29 146 1.4E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0753 5ac9aa884374b307cbfa78224d894ffd 169 SUPERFAMILY SSF143422 18 146 3.27E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0753 5ac9aa884374b307cbfa78224d894ffd 169 Gene3D G3DSA:3.30.70.1290 16 149 2.9E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0753 5ac9aa884374b307cbfa78224d894ffd 169 SMART SM01321 28 146 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0753 5ac9aa884374b307cbfa78224d894ffd 169 Pfam PF01797 Transposase IS200 like 29 146 1.4E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_1168 5ac9aa884374b307cbfa78224d894ffd 169 SUPERFAMILY SSF143422 18 146 3.27E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_1168 5ac9aa884374b307cbfa78224d894ffd 169 Gene3D G3DSA:3.30.70.1290 16 149 2.9E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_1168 5ac9aa884374b307cbfa78224d894ffd 169 SMART SM01321 28 146 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_1168 5ac9aa884374b307cbfa78224d894ffd 169 Pfam PF01797 Transposase IS200 like 29 146 1.4E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_1056 5ac9aa884374b307cbfa78224d894ffd 169 SUPERFAMILY SSF143422 18 146 3.27E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_1056 5ac9aa884374b307cbfa78224d894ffd 169 Gene3D G3DSA:3.30.70.1290 16 149 2.9E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_1056 5ac9aa884374b307cbfa78224d894ffd 169 SMART SM01321 28 146 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_1056 5ac9aa884374b307cbfa78224d894ffd 169 Pfam PF01797 Transposase IS200 like 29 146 1.4E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3331 5ac9aa884374b307cbfa78224d894ffd 169 SUPERFAMILY SSF143422 18 146 3.27E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3331 5ac9aa884374b307cbfa78224d894ffd 169 Gene3D G3DSA:3.30.70.1290 16 149 2.9E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3331 5ac9aa884374b307cbfa78224d894ffd 169 SMART SM01321 28 146 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3331 5ac9aa884374b307cbfa78224d894ffd 169 Pfam PF01797 Transposase IS200 like 29 146 1.4E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3010 5ac9aa884374b307cbfa78224d894ffd 169 SUPERFAMILY SSF143422 18 146 3.27E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3010 5ac9aa884374b307cbfa78224d894ffd 169 Gene3D G3DSA:3.30.70.1290 16 149 2.9E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3010 5ac9aa884374b307cbfa78224d894ffd 169 SMART SM01321 28 146 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3010 5ac9aa884374b307cbfa78224d894ffd 169 Pfam PF01797 Transposase IS200 like 29 146 1.4E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2182 5ac9aa884374b307cbfa78224d894ffd 169 SUPERFAMILY SSF143422 18 146 3.27E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2182 5ac9aa884374b307cbfa78224d894ffd 169 Gene3D G3DSA:3.30.70.1290 16 149 2.9E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2182 5ac9aa884374b307cbfa78224d894ffd 169 SMART SM01321 28 146 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2182 5ac9aa884374b307cbfa78224d894ffd 169 Pfam PF01797 Transposase IS200 like 29 146 1.4E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0098 5ac9aa884374b307cbfa78224d894ffd 169 SUPERFAMILY SSF143422 18 146 3.27E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0098 5ac9aa884374b307cbfa78224d894ffd 169 Gene3D G3DSA:3.30.70.1290 16 149 2.9E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0098 5ac9aa884374b307cbfa78224d894ffd 169 SMART SM01321 28 146 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0098 5ac9aa884374b307cbfa78224d894ffd 169 Pfam PF01797 Transposase IS200 like 29 146 1.4E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3905 5ac9aa884374b307cbfa78224d894ffd 169 SUPERFAMILY SSF143422 18 146 3.27E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3905 5ac9aa884374b307cbfa78224d894ffd 169 Gene3D G3DSA:3.30.70.1290 16 149 2.9E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3905 5ac9aa884374b307cbfa78224d894ffd 169 SMART SM01321 28 146 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3905 5ac9aa884374b307cbfa78224d894ffd 169 Pfam PF01797 Transposase IS200 like 29 146 1.4E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0965 5ac9aa884374b307cbfa78224d894ffd 169 SUPERFAMILY SSF143422 18 146 3.27E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0965 5ac9aa884374b307cbfa78224d894ffd 169 Gene3D G3DSA:3.30.70.1290 16 149 2.9E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0965 5ac9aa884374b307cbfa78224d894ffd 169 SMART SM01321 28 146 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0965 5ac9aa884374b307cbfa78224d894ffd 169 Pfam PF01797 Transposase IS200 like 29 146 1.4E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_1224 5ac9aa884374b307cbfa78224d894ffd 169 SUPERFAMILY SSF143422 18 146 3.27E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_1224 5ac9aa884374b307cbfa78224d894ffd 169 Gene3D G3DSA:3.30.70.1290 16 149 2.9E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_1224 5ac9aa884374b307cbfa78224d894ffd 169 SMART SM01321 28 146 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_1224 5ac9aa884374b307cbfa78224d894ffd 169 Pfam PF01797 Transposase IS200 like 29 146 1.4E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0019 5ac9aa884374b307cbfa78224d894ffd 169 SUPERFAMILY SSF143422 18 146 3.27E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0019 5ac9aa884374b307cbfa78224d894ffd 169 Gene3D G3DSA:3.30.70.1290 16 149 2.9E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0019 5ac9aa884374b307cbfa78224d894ffd 169 SMART SM01321 28 146 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0019 5ac9aa884374b307cbfa78224d894ffd 169 Pfam PF01797 Transposase IS200 like 29 146 1.4E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2252 5ac9aa884374b307cbfa78224d894ffd 169 SUPERFAMILY SSF143422 18 146 3.27E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2252 5ac9aa884374b307cbfa78224d894ffd 169 Gene3D G3DSA:3.30.70.1290 16 149 2.9E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2252 5ac9aa884374b307cbfa78224d894ffd 169 SMART SM01321 28 146 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2252 5ac9aa884374b307cbfa78224d894ffd 169 Pfam PF01797 Transposase IS200 like 29 146 1.4E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3517 5ac9aa884374b307cbfa78224d894ffd 169 SUPERFAMILY SSF143422 18 146 3.27E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3517 5ac9aa884374b307cbfa78224d894ffd 169 Gene3D G3DSA:3.30.70.1290 16 149 2.9E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3517 5ac9aa884374b307cbfa78224d894ffd 169 SMART SM01321 28 146 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3517 5ac9aa884374b307cbfa78224d894ffd 169 Pfam PF01797 Transposase IS200 like 29 146 1.4E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_1187 5ac9aa884374b307cbfa78224d894ffd 169 SUPERFAMILY SSF143422 18 146 3.27E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_1187 5ac9aa884374b307cbfa78224d894ffd 169 Gene3D G3DSA:3.30.70.1290 16 149 2.9E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_1187 5ac9aa884374b307cbfa78224d894ffd 169 SMART SM01321 28 146 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_1187 5ac9aa884374b307cbfa78224d894ffd 169 Pfam PF01797 Transposase IS200 like 29 146 1.4E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2621 5ac9aa884374b307cbfa78224d894ffd 169 SUPERFAMILY SSF143422 18 146 3.27E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2621 5ac9aa884374b307cbfa78224d894ffd 169 Gene3D G3DSA:3.30.70.1290 16 149 2.9E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2621 5ac9aa884374b307cbfa78224d894ffd 169 SMART SM01321 28 146 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2621 5ac9aa884374b307cbfa78224d894ffd 169 Pfam PF01797 Transposase IS200 like 29 146 1.4E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3798 4da070f5da2512349adb1d8e876a361e 297 SUPERFAMILY SSF46785 8 91 1.69E-16 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3798 4da070f5da2512349adb1d8e876a361e 297 Gene3D G3DSA:3.40.190.290 112 288 3.4E-13 T 14-10-2018 YP_3798 4da070f5da2512349adb1d8e876a361e 297 Pfam PF03466 LysR substrate binding domain 120 280 3.3E-18 T 14-10-2018 IPR005119 LysR, substrate-binding YP_3798 4da070f5da2512349adb1d8e876a361e 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 5.0E-16 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3798 4da070f5da2512349adb1d8e876a361e 297 SUPERFAMILY SSF53850 93 288 6.64E-23 T 14-10-2018 YP_3798 4da070f5da2512349adb1d8e876a361e 297 Gene3D G3DSA:1.10.10.10 6 94 5.2E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1703 ae9751440d88d1456a579271f9a3770b 366 TIGRFAM TIGR00846 caca2: calcium/proton exchanger 11 364 7.7E-103 T 14-10-2018 IPR004713 Calcium/proton exchanger GO:0006812|GO:0008324|GO:0016021|GO:0055085 YP_1703 ae9751440d88d1456a579271f9a3770b 366 Pfam PF01699 Sodium/calcium exchanger protein 42 192 4.7E-13 T 14-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 YP_1703 ae9751440d88d1456a579271f9a3770b 366 Pfam PF01699 Sodium/calcium exchanger protein 223 363 1.1E-7 T 14-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 YP_1243 67c9d5ce2732c36a100f58f0d32c7eb0 186 Pfam PF01817 Chorismate mutase type II 39 104 6.0E-9 T 14-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YP_1243 67c9d5ce2732c36a100f58f0d32c7eb0 186 SUPERFAMILY SSF48600 38 184 2.58E-36 T 14-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YP_1243 67c9d5ce2732c36a100f58f0d32c7eb0 186 PIRSF PIRSF026640 1 186 1.6E-67 T 14-10-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YP_1243 67c9d5ce2732c36a100f58f0d32c7eb0 186 SMART SM00830 35 106 1.8E-10 T 14-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YP_1243 67c9d5ce2732c36a100f58f0d32c7eb0 186 Gene3D G3DSA:1.20.140.170 31 186 9.9E-63 T 14-10-2018 YP_1243 67c9d5ce2732c36a100f58f0d32c7eb0 186 TIGRFAM TIGR01806 CM_mono2: putative chorismate mutase 29 141 3.6E-45 T 14-10-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YP_3485 dbaec1bf0a7ff2eec01ac0dfd607a008 714 Pfam PF00593 TonB dependent receptor 258 711 3.8E-61 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YP_3485 dbaec1bf0a7ff2eec01ac0dfd607a008 714 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 73 714 8.9E-106 T 14-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 YP_3485 dbaec1bf0a7ff2eec01ac0dfd607a008 714 Gene3D G3DSA:2.170.130.10 49 179 3.1E-31 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YP_3485 dbaec1bf0a7ff2eec01ac0dfd607a008 714 SUPERFAMILY SSF56935 59 714 9.07E-126 T 14-10-2018 YP_3485 dbaec1bf0a7ff2eec01ac0dfd607a008 714 Gene3D G3DSA:2.40.170.20 180 714 1.2E-115 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_3485 dbaec1bf0a7ff2eec01ac0dfd607a008 714 Pfam PF07715 TonB-dependent Receptor Plug Domain 72 168 7.3E-15 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain YP_1207 919b4345fbc04b413a6a8a71db5226e4 345 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 104 114 - T 14-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 YP_1207 919b4345fbc04b413a6a8a71db5226e4 345 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 20 345 2.9E-148 T 14-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 YP_1207 919b4345fbc04b413a6a8a71db5226e4 345 PIRSF PIRSF500176 22 345 3.2E-81 T 14-10-2018 YP_1207 919b4345fbc04b413a6a8a71db5226e4 345 PIRSF PIRSF001220 21 345 4.3E-93 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YP_1207 919b4345fbc04b413a6a8a71db5226e4 345 PRINTS PR00139 Asparaginase/glutaminase family signature 26 37 5.8E-23 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YP_1207 919b4345fbc04b413a6a8a71db5226e4 345 PRINTS PR00139 Asparaginase/glutaminase family signature 103 121 5.8E-23 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YP_1207 919b4345fbc04b413a6a8a71db5226e4 345 PRINTS PR00139 Asparaginase/glutaminase family signature 279 297 5.8E-23 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YP_1207 919b4345fbc04b413a6a8a71db5226e4 345 Gene3D G3DSA:3.40.50.40 232 345 7.2E-43 T 14-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 YP_1207 919b4345fbc04b413a6a8a71db5226e4 345 SUPERFAMILY SSF53774 23 344 8.64E-107 T 14-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 YP_1207 919b4345fbc04b413a6a8a71db5226e4 345 SMART SM00870 25 339 2.8E-139 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YP_1207 919b4345fbc04b413a6a8a71db5226e4 345 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 28 36 - T 14-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 YP_1207 919b4345fbc04b413a6a8a71db5226e4 345 Pfam PF00710 Asparaginase, N-terminal 25 215 2.2E-61 T 14-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 YP_1207 919b4345fbc04b413a6a8a71db5226e4 345 Gene3D G3DSA:3.40.50.1170 23 231 5.1E-84 T 14-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 YP_2024 f583178a63d92b9e1bf58a6a1317d033 389 Gene3D G3DSA:1.25.40.10 179 343 1.6E-15 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2024 f583178a63d92b9e1bf58a6a1317d033 389 SMART SM00028 180 213 40.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YP_2024 f583178a63d92b9e1bf58a6a1317d033 389 SMART SM00028 69 102 64.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YP_2024 f583178a63d92b9e1bf58a6a1317d033 389 SMART SM00028 107 140 140.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YP_2024 f583178a63d92b9e1bf58a6a1317d033 389 SMART SM00028 282 315 350.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YP_2024 f583178a63d92b9e1bf58a6a1317d033 389 SMART SM00028 214 247 0.61 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YP_2024 f583178a63d92b9e1bf58a6a1317d033 389 SUPERFAMILY SSF48452 109 279 3.6E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2024 f583178a63d92b9e1bf58a6a1317d033 389 Gene3D G3DSA:1.25.40.10 38 178 8.8E-15 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2024 f583178a63d92b9e1bf58a6a1317d033 389 Pfam PF13432 Tetratricopeptide repeat 185 243 0.0022 T 14-10-2018 YP_2024 f583178a63d92b9e1bf58a6a1317d033 389 SUPERFAMILY SSF48452 38 137 5.69E-5 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2024 f583178a63d92b9e1bf58a6a1317d033 389 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 387 36.84 T 14-10-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 YP_2024 f583178a63d92b9e1bf58a6a1317d033 389 Pfam PF13176 Tetratricopeptide repeat 71 97 0.028 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YP_2034 ef26f87c2f8a0d314bb42692716ff761 644 Pfam PF08206 Ribonuclease B OB domain 24 80 5.9E-19 T 14-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain YP_2034 ef26f87c2f8a0d314bb42692716ff761 644 Pfam PF00773 RNB domain 189 516 4.2E-86 T 14-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 YP_2034 ef26f87c2f8a0d314bb42692716ff761 644 SMART SM00955 189 517 5.1E-124 T 14-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 YP_2034 ef26f87c2f8a0d314bb42692716ff761 644 SUPERFAMILY SSF50249 171 556 2.0E-115 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_2034 ef26f87c2f8a0d314bb42692716ff761 644 SMART SM00357 23 79 1.5E-12 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 YP_2034 ef26f87c2f8a0d314bb42692716ff761 644 Pfam PF00575 S1 RNA binding domain 560 639 9.9E-11 T 14-10-2018 IPR003029 S1 domain GO:0003676 YP_2034 ef26f87c2f8a0d314bb42692716ff761 644 TIGRFAM TIGR02062 RNase_B: exoribonuclease II 1 642 0.0 T 14-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 YP_2034 ef26f87c2f8a0d314bb42692716ff761 644 SUPERFAMILY SSF50249 8 80 1.52E-15 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_2034 ef26f87c2f8a0d314bb42692716ff761 644 SUPERFAMILY SSF50249 83 171 1.15E-30 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_2034 ef26f87c2f8a0d314bb42692716ff761 644 Gene3D G3DSA:2.40.50.640 83 155 1.2E-29 T 14-10-2018 YP_2034 ef26f87c2f8a0d314bb42692716ff761 644 Gene3D G3DSA:2.40.50.140 558 644 5.2E-36 T 14-10-2018 YP_2034 ef26f87c2f8a0d314bb42692716ff761 644 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 6 643 1.7E-223 T 14-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 YP_2034 ef26f87c2f8a0d314bb42692716ff761 644 ProSitePatterns PS01175 Ribonuclease II family signature. 484 508 - T 14-10-2018 IPR022966 Ribonuclease II/R, conserved site YP_2034 ef26f87c2f8a0d314bb42692716ff761 644 Hamap MF_01036 Exoribonuclease 2 [rnb]. 1 643 45.17 T 14-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 YP_2034 ef26f87c2f8a0d314bb42692716ff761 644 SUPERFAMILY SSF50249 560 643 4.05E-21 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_2034 ef26f87c2f8a0d314bb42692716ff761 644 Gene3D G3DSA:2.40.50.140 1 82 1.7E-30 T 14-10-2018 YP_3551 c4e323c10d60c5cfe9e74ceb6b84f0f2 283 SUPERFAMILY SSF161098 10 283 3.18E-68 T 14-10-2018 IPR035906 MetI-like superfamily YP_3551 c4e323c10d60c5cfe9e74ceb6b84f0f2 283 Gene3D G3DSA:1.10.3720.10 5 270 2.9E-61 T 14-10-2018 IPR035906 MetI-like superfamily YP_3551 c4e323c10d60c5cfe9e74ceb6b84f0f2 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 276 4.5E-19 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1211 0e97b64c40203fc8f83f5c6b109acd34 224 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 53 115 9.6E-8 T 14-10-2018 IPR002654 Glycosyl transferase, family 25 YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 350 1.6E-143 T 14-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 Pfam PF00684 DnaJ central domain 147 207 4.6E-16 T 14-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 SMART SM00271 4 62 4.5E-26 T 14-10-2018 IPR001623 DnaJ domain YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 SUPERFAMILY SSF57938 134 211 4.32E-24 T 14-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 SUPERFAMILY SSF46565 1 108 1.96E-34 T 14-10-2018 IPR036869 Chaperone J-domain superfamily YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 Pfam PF01556 DnaJ C terminal domain 121 333 2.3E-46 T 14-10-2018 IPR002939 Chaperone DnaJ, C-terminal YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 SUPERFAMILY SSF49493 115 262 4.32E-21 T 14-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 Gene3D G3DSA:1.10.287.110 1 114 9.2E-37 T 14-10-2018 IPR036869 Chaperone J-domain superfamily YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 Gene3D G3DSA:2.60.260.20 257 360 7.1E-30 T 14-10-2018 YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 PRINTS PR00625 DnaJ domain signature 62 81 4.2E-32 T 14-10-2018 IPR001623 DnaJ domain YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 PRINTS PR00625 DnaJ domain signature 7 25 4.2E-32 T 14-10-2018 IPR001623 DnaJ domain YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 PRINTS PR00625 DnaJ domain signature 25 40 4.2E-32 T 14-10-2018 IPR001623 DnaJ domain YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 PRINTS PR00625 DnaJ domain signature 42 62 4.2E-32 T 14-10-2018 IPR001623 DnaJ domain YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 SUPERFAMILY SSF49493 259 344 3.53E-22 T 14-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 373 42.797 T 14-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 14-10-2018 IPR018253 DnaJ domain, conserved site YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 Pfam PF00226 DnaJ domain 5 67 6.1E-26 T 14-10-2018 IPR001623 DnaJ domain YP_3711 91a67e16c6c31a434d097d9eef272ab9 379 Gene3D G3DSA:2.10.230.10 145 211 9.5E-24 T 14-10-2018 YP_0917 129efe2f7af4ae59eb266e662ea5ceb5 384 SUPERFAMILY SSF103473 22 378 4.19E-35 T 14-10-2018 IPR036259 MFS transporter superfamily YP_0917 129efe2f7af4ae59eb266e662ea5ceb5 384 Gene3D G3DSA:1.20.1250.20 18 189 1.8E-13 T 14-10-2018 YP_0917 129efe2f7af4ae59eb266e662ea5ceb5 384 Gene3D G3DSA:1.20.1250.20 200 382 2.3E-20 T 14-10-2018 YP_0917 129efe2f7af4ae59eb266e662ea5ceb5 384 Pfam PF07690 Major Facilitator Superfamily 22 324 6.9E-15 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_2208 7e24b2e9d4ebc37cbf0e40106a3b62f8 327 Hamap MF_01164 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [arnC]. 2 326 61.455 T 14-10-2018 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase GO:0016780 KEGG: 00520+2.4.2.53 YP_2208 7e24b2e9d4ebc37cbf0e40106a3b62f8 327 Gene3D G3DSA:3.90.550.10 3 230 3.6E-38 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_2208 7e24b2e9d4ebc37cbf0e40106a3b62f8 327 SUPERFAMILY SSF53448 8 244 1.06E-37 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_2208 7e24b2e9d4ebc37cbf0e40106a3b62f8 327 Pfam PF00535 Glycosyl transferase family 2 11 172 7.1E-31 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 YP_1587 ac71fe9f4fc19cff72639c663339ed6c 369 Hamap MF_00416 Flagellar P-ring protein [flgI]. 5 369 38.471 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_1587 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 108 125 6.2E-88 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_1587 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 125 143 6.2E-88 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_1587 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 165 183 6.2E-88 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_1587 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 40 55 6.2E-88 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_1587 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 86 105 6.2E-88 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_1587 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 25 40 6.2E-88 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_1587 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 60 75 6.2E-88 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_1587 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 191 209 6.2E-88 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_1587 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 255 267 6.2E-88 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_1587 ac71fe9f4fc19cff72639c663339ed6c 369 Pfam PF02119 Flagellar P-ring protein 25 368 6.8E-134 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_1693 15966b8b8bc4e3e67cb30a2e5674cee7 295 SUPERFAMILY SSF51197 10 109 3.43E-37 T 14-10-2018 YP_1693 15966b8b8bc4e3e67cb30a2e5674cee7 295 SUPERFAMILY SSF53335 75 282 6.39E-31 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1693 15966b8b8bc4e3e67cb30a2e5674cee7 295 Pfam PF09313 Domain of unknown function (DUF1971) 16 96 3.4E-30 T 14-10-2018 IPR015392 Domain of unknown function DUF1971 YP_1693 15966b8b8bc4e3e67cb30a2e5674cee7 295 PIRSF PIRSF005215 1 295 5.1E-150 T 14-10-2018 IPR014431 Tellurite resistance methyltransferase, TehB type-2 YP_1693 15966b8b8bc4e3e67cb30a2e5674cee7 295 Pfam PF03848 Tellurite resistance protein TehB 98 290 2.8E-112 T 14-10-2018 IPR015985 Tellurite resistance methyltransferase TehB-like domain YP_1693 15966b8b8bc4e3e67cb30a2e5674cee7 295 Gene3D G3DSA:2.60.120.10 9 114 4.8E-41 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_1693 15966b8b8bc4e3e67cb30a2e5674cee7 295 Gene3D G3DSA:3.40.50.150 115 294 7.1E-42 T 14-10-2018 YP_1693 15966b8b8bc4e3e67cb30a2e5674cee7 295 TIGRFAM TIGR00477 tehB: tellurite resistance protein TehB 56 293 4.0E-110 T 14-10-2018 IPR004537 Tellurite resistance methyltransferase, TehB GO:0005737|GO:0008757|GO:0046690 YP_2436 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_2436 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1701 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1701 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1752 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1752 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1939 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1939 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1815 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1815 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_2754 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_2754 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_0968 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_0968 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1383 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1383 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_2234 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_2234 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_2853 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_2853 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_2267 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_2267 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_3495 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_3495 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_2956 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_2956 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1802 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1802 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_pMT126 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_pMT126 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_2569 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_2569 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1835 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1835 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1993 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1993 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1156 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_1156 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_0298 79b6b0665687c5752df952fd019deba7 119 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 6 119 36.686 T 14-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 YP_0298 79b6b0665687c5752df952fd019deba7 119 Gene3D G3DSA:2.60.300.12 14 119 5.0E-34 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 YP_0298 79b6b0665687c5752df952fd019deba7 119 SUPERFAMILY SSF89360 13 108 8.24E-31 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 YP_0298 79b6b0665687c5752df952fd019deba7 119 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 14 118 6.4E-39 T 14-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 YP_0298 79b6b0665687c5752df952fd019deba7 119 Pfam PF01521 Iron-sulphur cluster biosynthesis 14 114 1.8E-20 T 14-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 YP_0298 79b6b0665687c5752df952fd019deba7 119 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 100 117 - T 14-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 YP_1948 336726945e6408b4e427bca9f98f73d7 434 Gene3D G3DSA:3.30.9.10 134 361 2.2E-51 T 14-10-2018 YP_1948 336726945e6408b4e427bca9f98f73d7 434 Gene3D G3DSA:3.50.50.60 105 404 2.2E-51 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_1948 336726945e6408b4e427bca9f98f73d7 434 Pfam PF01266 FAD dependent oxidoreductase 2 397 6.1E-76 T 14-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 YP_1948 336726945e6408b4e427bca9f98f73d7 434 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 410 52.832 T 14-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 YP_1948 336726945e6408b4e427bca9f98f73d7 434 SUPERFAMILY SSF54373 269 359 1.96E-17 T 14-10-2018 YP_1948 336726945e6408b4e427bca9f98f73d7 434 Gene3D G3DSA:3.50.50.60 1 85 2.7E-13 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_1948 336726945e6408b4e427bca9f98f73d7 434 SUPERFAMILY SSF51905 1 417 3.24E-54 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3661 adbf8891e3f395640b4365747732c52e 789 Gene3D G3DSA:3.30.70.2250 42 108 9.8E-58 T 14-10-2018 YP_3661 adbf8891e3f395640b4365747732c52e 789 Pfam PF03104 DNA polymerase family B, exonuclease domain 209 301 2.6E-5 T 14-10-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_3661 adbf8891e3f395640b4365747732c52e 789 Pfam PF03104 DNA polymerase family B, exonuclease domain 75 165 1.5E-4 T 14-10-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_3661 adbf8891e3f395640b4365747732c52e 789 SUPERFAMILY SSF56672 390 783 6.12E-117 T 14-10-2018 YP_3661 adbf8891e3f395640b4365747732c52e 789 Gene3D G3DSA:2.40.50.590 7 151 9.8E-58 T 14-10-2018 YP_3661 adbf8891e3f395640b4365747732c52e 789 Gene3D G3DSA:1.10.287.690 470 515 3.2E-25 T 14-10-2018 YP_3661 adbf8891e3f395640b4365747732c52e 789 Gene3D G3DSA:3.90.1600.10 353 460 4.6E-30 T 14-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_3661 adbf8891e3f395640b4365747732c52e 789 Gene3D G3DSA:3.90.1600.30 516 642 1.9E-9 T 14-10-2018 YP_3661 adbf8891e3f395640b4365747732c52e 789 Pfam PF00136 DNA polymerase family B 383 742 6.1E-41 T 14-10-2018 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_3661 adbf8891e3f395640b4365747732c52e 789 SUPERFAMILY SSF53098 5 394 5.22E-91 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_3661 adbf8891e3f395640b4365747732c52e 789 Gene3D G3DSA:1.10.132.60 645 789 3.0E-61 T 14-10-2018 YP_3661 adbf8891e3f395640b4365747732c52e 789 ProSitePatterns PS00116 DNA polymerase family B signature. 548 556 - T 14-10-2018 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_3661 adbf8891e3f395640b4365747732c52e 789 SMART SM00486 151 560 4.0E-61 T 14-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_3661 adbf8891e3f395640b4365747732c52e 789 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 420 433 7.2E-10 T 14-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_3661 adbf8891e3f395640b4365747732c52e 789 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 546 554 7.2E-10 T 14-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_3661 adbf8891e3f395640b4365747732c52e 789 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 494 506 7.2E-10 T 14-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_3661 adbf8891e3f395640b4365747732c52e 789 Gene3D G3DSA:3.30.420.10 154 352 1.6E-72 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_2109 289bc2de48823da6f0015cce2c6a8400 1295 SMART SM00487 71 255 2.5E-26 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_2109 289bc2de48823da6f0015cce2c6a8400 1295 SUPERFAMILY SSF52540 70 596 1.03E-109 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2109 289bc2de48823da6f0015cce2c6a8400 1295 SMART SM00382 88 380 4.8E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2109 289bc2de48823da6f0015cce2c6a8400 1295 Gene3D G3DSA:3.40.50.300 249 417 1.5E-55 T 14-10-2018 YP_2109 289bc2de48823da6f0015cce2c6a8400 1295 Pfam PF00270 DEAD/DEAH box helicase 82 229 5.9E-6 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YP_2109 289bc2de48823da6f0015cce2c6a8400 1295 Pfam PF04408 Helicase associated domain (HA2) 462 552 3.0E-17 T 14-10-2018 IPR007502 Helicase-associated domain GO:0004386 YP_2109 289bc2de48823da6f0015cce2c6a8400 1295 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 617 693 1.4E-18 T 14-10-2018 IPR011709 Domain of unknown function DUF1605 YP_2109 289bc2de48823da6f0015cce2c6a8400 1295 Pfam PF11898 Domain of unknown function (DUF3418) 708 1291 7.2E-235 T 14-10-2018 IPR024590 RNA helicase HrpA, C-terminal YP_2109 289bc2de48823da6f0015cce2c6a8400 1295 Gene3D G3DSA:3.40.50.300 24 248 2.5E-74 T 14-10-2018 YP_2109 289bc2de48823da6f0015cce2c6a8400 1295 Pfam PF00271 Helicase conserved C-terminal domain 282 399 2.0E-11 T 14-10-2018 IPR001650 Helicase, C-terminal YP_2109 289bc2de48823da6f0015cce2c6a8400 1295 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 10 1292 0.0 T 14-10-2018 IPR010222 RNA helicase HrpA GO:0004004 YP_2109 289bc2de48823da6f0015cce2c6a8400 1295 SMART SM00847 460 554 5.0E-36 T 14-10-2018 IPR007502 Helicase-associated domain GO:0004386 YP_2109 289bc2de48823da6f0015cce2c6a8400 1295 SMART SM00490 301 400 2.1E-15 T 14-10-2018 IPR001650 Helicase, C-terminal YP_2109 289bc2de48823da6f0015cce2c6a8400 1295 Gene3D G3DSA:1.20.120.1080 445 546 3.6E-19 T 14-10-2018 YP_3836 57621bb28eac9587646224a967476fc1 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 3 241 6.1E-123 T 14-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 YP_3836 57621bb28eac9587646224a967476fc1 241 Gene3D G3DSA:3.40.50.300 2 241 4.7E-72 T 14-10-2018 YP_3836 57621bb28eac9587646224a967476fc1 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3836 57621bb28eac9587646224a967476fc1 241 Pfam PF00005 ABC transporter 20 166 5.6E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3836 57621bb28eac9587646224a967476fc1 241 SUPERFAMILY SSF52540 4 236 3.24E-66 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3836 57621bb28eac9587646224a967476fc1 241 SMART SM00382 28 231 2.7E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3836 57621bb28eac9587646224a967476fc1 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 215 236 2.8E-8 T 14-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal YP_0163 100c02e497212e0353cca26db71887f1 848 PRINTS PR00397 Sirohaem Fe-binding site signature 678 696 6.6E-6 T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0163 100c02e497212e0353cca26db71887f1 848 PRINTS PR00397 Sirohaem Fe-binding site signature 635 653 6.6E-6 T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0163 100c02e497212e0353cca26db71887f1 848 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 559 620 4.6E-11 T 14-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0163 100c02e497212e0353cca26db71887f1 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 6.4E-11 T 14-10-2018 YP_0163 100c02e497212e0353cca26db71887f1 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 105 114 6.4E-11 T 14-10-2018 YP_0163 100c02e497212e0353cca26db71887f1 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 283 6.4E-11 T 14-10-2018 YP_0163 100c02e497212e0353cca26db71887f1 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 6.4E-11 T 14-10-2018 YP_0163 100c02e497212e0353cca26db71887f1 848 Gene3D G3DSA:1.10.10.1100 422 476 9.9E-12 T 14-10-2018 YP_0163 100c02e497212e0353cca26db71887f1 848 Gene3D G3DSA:3.50.50.60 110 246 6.5E-83 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0163 100c02e497212e0353cca26db71887f1 848 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 632 755 1.1E-14 T 14-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0163 100c02e497212e0353cca26db71887f1 848 SUPERFAMILY SSF56014 632 808 1.3E-44 T 14-10-2018 YP_0163 100c02e497212e0353cca26db71887f1 848 Pfam PF04324 BFD-like [2Fe-2S] binding domain 423 470 4.2E-15 T 14-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain YP_0163 100c02e497212e0353cca26db71887f1 848 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 800 0.0 T 14-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 YP_0163 100c02e497212e0353cca26db71887f1 848 Gene3D G3DSA:3.30.413.10 631 779 3.1E-30 T 14-10-2018 YP_0163 100c02e497212e0353cca26db71887f1 848 PIRSF PIRSF037149 1 834 0.0 T 14-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 YP_0163 100c02e497212e0353cca26db71887f1 848 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 678 694 - T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0163 100c02e497212e0353cca26db71887f1 848 SUPERFAMILY SSF51905 2 310 9.61E-40 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0163 100c02e497212e0353cca26db71887f1 848 SUPERFAMILY SSF55124 501 626 9.6E-32 T 14-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0163 100c02e497212e0353cca26db71887f1 848 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 288 9.0E-53 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YP_0163 100c02e497212e0353cca26db71887f1 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 1.1E-13 T 14-10-2018 YP_0163 100c02e497212e0353cca26db71887f1 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 1.1E-13 T 14-10-2018 YP_0163 100c02e497212e0353cca26db71887f1 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 1.1E-13 T 14-10-2018 YP_0163 100c02e497212e0353cca26db71887f1 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 1.1E-13 T 14-10-2018 YP_0163 100c02e497212e0353cca26db71887f1 848 Gene3D G3DSA:3.50.50.60 8 283 6.5E-83 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3019 051f2b440c6cee44fae2a6c57690675d 257 Pfam PF01311 Bacterial export proteins, family 1 13 245 4.8E-56 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_3019 051f2b440c6cee44fae2a6c57690675d 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 1.5E-15 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_3019 051f2b440c6cee44fae2a6c57690675d 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 1.5E-15 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_3019 051f2b440c6cee44fae2a6c57690675d 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 21 42 1.5E-15 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_3019 051f2b440c6cee44fae2a6c57690675d 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 1.5E-15 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 SUPERFAMILY SSF82866 338 539 6.67E-49 T 14-10-2018 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 Gene3D G3DSA:3.30.70.1430 80 862 0.0 T 14-10-2018 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 43 1075 0.0 T 14-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 Gene3D G3DSA:1.20.1640.10 50 557 0.0 T 14-10-2018 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 SUPERFAMILY SSF82714 224 314 2.75E-23 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 Gene3D G3DSA:3.30.70.1440 717 906 0.0 T 14-10-2018 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 Gene3D G3DSA:3.30.70.1430 612 716 0.0 T 14-10-2018 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 PRINTS PR00702 Acriflavin resistance protein family signature 433 457 6.1E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 PRINTS PR00702 Acriflavin resistance protein family signature 595 612 6.1E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 PRINTS PR00702 Acriflavin resistance protein family signature 378 401 6.1E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 PRINTS PR00702 Acriflavin resistance protein family signature 512 535 6.1E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 PRINTS PR00702 Acriflavin resistance protein family signature 78 96 6.1E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 PRINTS PR00702 Acriflavin resistance protein family signature 487 510 6.1E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 PRINTS PR00702 Acriflavin resistance protein family signature 50 74 6.1E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 PRINTS PR00702 Acriflavin resistance protein family signature 405 426 6.1E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 PRINTS PR00702 Acriflavin resistance protein family signature 664 678 6.1E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 Gene3D G3DSA:3.30.70.1320 175 372 0.0 T 14-10-2018 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 Gene3D G3DSA:3.30.2090.10 766 854 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 SUPERFAMILY SSF82866 849 1073 1.96E-46 T 14-10-2018 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 Gene3D G3DSA:3.30.2090.10 222 319 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 SUPERFAMILY SSF82693 81 173 2.49E-27 T 14-10-2018 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 SUPERFAMILY SSF82693 178 372 1.91E-25 T 14-10-2018 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 Gene3D G3DSA:1.20.1640.10 558 1066 0.0 T 14-10-2018 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 Pfam PF00873 AcrB/AcrD/AcrF family 43 1069 0.0 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 SUPERFAMILY SSF82693 608 714 4.08E-27 T 14-10-2018 YP_2666 0e4426c545442a6e00adf77e4b88aaa5 1085 SUPERFAMILY SSF82714 765 852 1.7E-22 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_2356 c86536ed04bc0f459f088d79e0f01876 599 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 406 425 2.7E-55 T 14-10-2018 YP_2356 c86536ed04bc0f459f088d79e0f01876 599 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 98 118 2.7E-55 T 14-10-2018 YP_2356 c86536ed04bc0f459f088d79e0f01876 599 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 235 261 2.7E-55 T 14-10-2018 YP_2356 c86536ed04bc0f459f088d79e0f01876 599 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 213 234 2.7E-55 T 14-10-2018 YP_2356 c86536ed04bc0f459f088d79e0f01876 599 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 70 95 2.7E-55 T 14-10-2018 YP_2356 c86536ed04bc0f459f088d79e0f01876 599 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 303 315 2.7E-55 T 14-10-2018 YP_2356 c86536ed04bc0f459f088d79e0f01876 599 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 145 166 2.7E-55 T 14-10-2018 YP_2356 c86536ed04bc0f459f088d79e0f01876 599 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 46 70 4.3E-10 T 14-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 YP_2356 c86536ed04bc0f459f088d79e0f01876 599 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 405 427 4.3E-10 T 14-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 YP_2356 c86536ed04bc0f459f088d79e0f01876 599 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 72 92 4.3E-10 T 14-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 YP_2356 c86536ed04bc0f459f088d79e0f01876 599 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 253 275 4.3E-10 T 14-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 YP_2356 c86536ed04bc0f459f088d79e0f01876 599 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 52 109 2.6E-23 T 14-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2356 c86536ed04bc0f459f088d79e0f01876 599 Pfam PF00361 Proton-conducting membrane transporter 121 413 9.7E-95 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2356 c86536ed04bc0f459f088d79e0f01876 599 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 2 596 3.9E-226 T 14-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_1572 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 222 243 4.6E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_1572 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 246 271 4.6E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_1572 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 74 93 4.6E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_1572 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 93 113 4.6E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_1572 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 113 132 4.6E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_1572 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 201 221 4.6E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_1572 3c565f6ea2ca284ab394824398b4ecbf 274 Pfam PF00813 FliP family 77 268 4.9E-77 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_1572 3c565f6ea2ca284ab394824398b4ecbf 274 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 249 261 - T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_1572 3c565f6ea2ca284ab394824398b4ecbf 274 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 201 216 - T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_1572 3c565f6ea2ca284ab394824398b4ecbf 274 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 76 272 1.4E-92 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YP_1572 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 144 158 2.1E-31 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YP_1572 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 262 272 2.1E-31 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YP_1572 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 132 144 2.1E-31 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YP_1572 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 194 206 2.1E-31 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YP_1572 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 172 184 2.1E-31 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YP_1572 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 72 81 2.1E-31 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YP_3235 21ebc54dc39b1a21ccf2f125f60e038a 547 Gene3D G3DSA:1.20.120.140 246 542 6.6E-117 T 14-10-2018 YP_3235 21ebc54dc39b1a21ccf2f125f60e038a 547 SMART SM00382 342 522 6.9E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3235 21ebc54dc39b1a21ccf2f125f60e038a 547 Pfam PF02881 SRP54-type protein, helical bundle domain 260 325 1.3E-12 T 14-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YP_3235 21ebc54dc39b1a21ccf2f125f60e038a 547 SUPERFAMILY SSF52540 340 543 6.46E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3235 21ebc54dc39b1a21ccf2f125f60e038a 547 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 272 543 4.5E-115 T 14-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 YP_3235 21ebc54dc39b1a21ccf2f125f60e038a 547 SMART SM00962 343 544 1.3E-122 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YP_3235 21ebc54dc39b1a21ccf2f125f60e038a 547 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 272 544 65.048 T 14-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 YP_3235 21ebc54dc39b1a21ccf2f125f60e038a 547 SUPERFAMILY SSF47364 244 323 3.93E-22 T 14-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 YP_3235 21ebc54dc39b1a21ccf2f125f60e038a 547 SMART SM00963 249 329 2.1E-24 T 14-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YP_3235 21ebc54dc39b1a21ccf2f125f60e038a 547 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 517 530 - T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YP_3235 21ebc54dc39b1a21ccf2f125f60e038a 547 Gene3D G3DSA:3.40.50.300 341 532 6.6E-117 T 14-10-2018 YP_3235 21ebc54dc39b1a21ccf2f125f60e038a 547 Pfam PF00448 SRP54-type protein, GTPase domain 344 543 1.3E-77 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1868 2276 2.4E-115 T 14-10-2018 IPR010071 Amino acid adenylation domain YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 SUPERFAMILY SSF56801 7 565 1.05E-83 T 14-10-2018 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 SUPERFAMILY SSF53901 678 1035 8.53E-71 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 SUPERFAMILY SSF52777 1395 1565 8.34E-19 T 14-10-2018 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1995 2006 - T 14-10-2018 IPR020845 AMP-binding, conserved site YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Pfam PF00668 Condensation domain 1394 1811 2.2E-25 T 14-10-2018 IPR001242 Condensation domain YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Pfam PF00668 Condensation domain 2868 3245 1.9E-34 T 14-10-2018 IPR001242 Condensation domain YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 SUPERFAMILY SSF47336 2721 2789 2.62E-10 T 14-10-2018 IPR036736 ACP-like superfamily YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Pfam PF00501 AMP-binding enzyme 1847 2251 2.4E-86 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Pfam PF00501 AMP-binding enzyme 16 462 3.7E-59 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 SUPERFAMILY SSF52777 3010 3251 4.45E-45 T 14-10-2018 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Gene3D G3DSA:3.30.300.30 457 585 5.8E-25 T 14-10-2018 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 SMART SM00823 Phosphopantetheine attachment site 598 667 0.0019 T 14-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 SMART SM00823 Phosphopantetheine attachment site 2725 2793 0.18 T 14-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 SUPERFAMILY SSF56801 1814 2737 3.4E-124 T 14-10-2018 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Gene3D G3DSA:3.30.70.3290 1140 1272 1.2E-13 T 14-10-2018 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 SUPERFAMILY SSF47336 1294 1404 2.75E-8 T 14-10-2018 IPR036736 ACP-like superfamily YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Gene3D G3DSA:3.30.300.30 2246 2341 4.0E-8 T 14-10-2018 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 927 1035 1.4E-30 T 14-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2748 2763 - T 14-10-2018 IPR006162 Phosphopantetheine attachment site YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 SMART SM00825 Beta-ketoacyl synthase 684 1090 2.7E-110 T 14-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Gene3D G3DSA:3.30.559.10 1388 1565 7.7E-35 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Gene3D G3DSA:3.30.559.10 2805 3005 8.1E-50 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Gene3D G3DSA:3.40.47.10 674 1124 1.5E-130 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Gene3D G3DSA:3.40.50.12780 10 455 1.5E-100 T 14-10-2018 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 SUPERFAMILY SSF47336 595 696 5.89E-12 T 14-10-2018 IPR036736 ACP-like superfamily YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Gene3D G3DSA:3.40.50.150 2343 2628 1.9E-11 T 14-10-2018 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Gene3D G3DSA:1.10.1200.10 1287 1363 2.4E-13 T 14-10-2018 IPR036736 ACP-like superfamily YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Gene3D G3DSA:3.30.300.30 2629 2704 4.3E-13 T 14-10-2018 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 832 848 - T 14-10-2018 IPR018201 Beta-ketoacyl synthase, active site YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Gene3D G3DSA:3.40.50.12780 1840 2244 6.8E-101 T 14-10-2018 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 682 919 7.1E-58 T 14-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Gene3D G3DSA:1.10.1200.10 594 673 1.2E-10 T 14-10-2018 IPR036736 ACP-like superfamily YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 SUPERFAMILY SSF52777 2866 3005 1.22E-23 T 14-10-2018 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Pfam PF00550 Phosphopantetheine attachment site 603 660 5.1E-9 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Pfam PF00550 Phosphopantetheine attachment site 1296 1359 7.0E-9 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Pfam PF00550 Phosphopantetheine attachment site 2728 2787 1.3E-8 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Gene3D G3DSA:1.10.1200.10 2718 2788 1.2E-13 T 14-10-2018 IPR036736 ACP-like superfamily YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 SUPERFAMILY SSF52777 1570 1809 7.11E-38 T 14-10-2018 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Gene3D G3DSA:3.30.559.30 3008 3297 8.5E-85 T 14-10-2018 YP_3423 64d229d1f5a31c24f0dcfa16f8070882 3311 Gene3D G3DSA:3.30.559.30 1569 1820 5.6E-76 T 14-10-2018 YP_3196 bbf9097515f883443376dc71079528be 249 Gene3D G3DSA:3.40.50.10090 32 165 1.9E-68 T 14-10-2018 YP_3196 bbf9097515f883443376dc71079528be 249 SUPERFAMILY SSF69618 1 247 1.44E-56 T 14-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YP_3196 bbf9097515f883443376dc71079528be 249 Gene3D G3DSA:3.40.50.10090 4 245 1.9E-68 T 14-10-2018 YP_3196 bbf9097515f883443376dc71079528be 249 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 242 5.8E-45 T 14-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 104 176 3.0E-25 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 SUPERFAMILY SSF51126 64 363 5.96E-48 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 SMART SM00710 1328 1372 10000.0 T 14-10-2018 IPR006626 Parallel beta-helix repeat YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 SMART SM00710 625 646 990.0 T 14-10-2018 IPR006626 Parallel beta-helix repeat YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 SMART SM00710 1159 1180 3300.0 T 14-10-2018 IPR006626 Parallel beta-helix repeat YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 SMART SM00710 1673 1697 93.0 T 14-10-2018 IPR006626 Parallel beta-helix repeat YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 SMART SM00710 557 593 4200.0 T 14-10-2018 IPR006626 Parallel beta-helix repeat YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 SMART SM00710 210 232 9100.0 T 14-10-2018 IPR006626 Parallel beta-helix repeat YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 SMART SM00710 816 840 6100.0 T 14-10-2018 IPR006626 Parallel beta-helix repeat YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 SMART SM00710 1533 1554 4300.0 T 14-10-2018 IPR006626 Parallel beta-helix repeat YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 SMART SM00710 999 1040 690.0 T 14-10-2018 IPR006626 Parallel beta-helix repeat YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 SMART SM00710 1719 1743 4900.0 T 14-10-2018 IPR006626 Parallel beta-helix repeat YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 SMART SM00710 1568 1589 5900.0 T 14-10-2018 IPR006626 Parallel beta-helix repeat YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 SMART SM00710 777 809 3000.0 T 14-10-2018 IPR006626 Parallel beta-helix repeat YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 SMART SM00710 1395 1419 6300.0 T 14-10-2018 IPR006626 Parallel beta-helix repeat YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 Gene3D G3DSA:2.160.20.10 74 456 1.8E-91 T 14-10-2018 IPR012334 Pectin lyase fold YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 Pfam PF05860 haemagglutination activity domain 90 178 1.4E-22 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 SMART SM00912 70 182 7.1E-37 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YP_0685 9fef1b91e3cef2b3ae4cedb23e27c551 1910 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 25 2.4E-4 T 14-10-2018 IPR024973 ESPR domain YP_3789 492022649f7965dcc11bfb4af1bc8e59 240 SUPERFAMILY SSF55874 23 230 5.02E-25 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3789 492022649f7965dcc11bfb4af1bc8e59 240 Gene3D G3DSA:3.30.565.10 11 207 9.6E-26 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3789 492022649f7965dcc11bfb4af1bc8e59 240 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 142 4.5E-17 T 14-10-2018 YP_1153 3f786a01c7f234df3e243105f61522ca 638 PRINTS PR01484 Pertactin virulence factor family signature 527 550 4.2E-11 T 14-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YP_1153 3f786a01c7f234df3e243105f61522ca 638 PRINTS PR01484 Pertactin virulence factor family signature 359 377 4.2E-11 T 14-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YP_1153 3f786a01c7f234df3e243105f61522ca 638 PRINTS PR01484 Pertactin virulence factor family signature 421 445 4.2E-11 T 14-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YP_1153 3f786a01c7f234df3e243105f61522ca 638 PRINTS PR01484 Pertactin virulence factor family signature 593 618 4.2E-11 T 14-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YP_1153 3f786a01c7f234df3e243105f61522ca 638 PRINTS PR01484 Pertactin virulence factor family signature 508 525 4.2E-11 T 14-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YP_1153 3f786a01c7f234df3e243105f61522ca 638 PRINTS PR01484 Pertactin virulence factor family signature 618 638 4.2E-11 T 14-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YP_1153 3f786a01c7f234df3e243105f61522ca 638 Pfam PF03212 Pertactin 203 323 2.4E-31 T 14-10-2018 IPR004899 Pertactin, central region YP_1153 3f786a01c7f234df3e243105f61522ca 638 Pfam PF03797 Autotransporter beta-domain 383 617 1.1E-46 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_1153 3f786a01c7f234df3e243105f61522ca 638 SMART SM00869 380 627 7.1E-41 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_1153 3f786a01c7f234df3e243105f61522ca 638 SUPERFAMILY SSF51126 24 323 4.39E-31 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor YP_1153 3f786a01c7f234df3e243105f61522ca 638 SUPERFAMILY SSF103515 349 638 3.66E-47 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_1153 3f786a01c7f234df3e243105f61522ca 638 Gene3D G3DSA:2.40.128.130 335 638 5.8E-70 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_1153 3f786a01c7f234df3e243105f61522ca 638 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 221 638 2.6E-116 T 14-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YP_0659 347a23c45495586dcdb32bb3a53ddfbf 880 Pfam PF13549 ATP-grasp domain 472 694 6.0E-73 T 14-10-2018 YP_0659 347a23c45495586dcdb32bb3a53ddfbf 880 SUPERFAMILY SSF56059 481 692 7.95E-26 T 14-10-2018 YP_0659 347a23c45495586dcdb32bb3a53ddfbf 880 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 147 280 3.0E-45 T 14-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain YP_0659 347a23c45495586dcdb32bb3a53ddfbf 880 SMART SM00881 9 104 8.8E-22 T 14-10-2018 IPR003781 CoA-binding GO:0048037 YP_0659 347a23c45495586dcdb32bb3a53ddfbf 880 Gene3D G3DSA:3.30.470.20 479 690 1.8E-55 T 14-10-2018 YP_0659 347a23c45495586dcdb32bb3a53ddfbf 880 SUPERFAMILY SSF55729 614 866 2.4E-23 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_0659 347a23c45495586dcdb32bb3a53ddfbf 880 Gene3D G3DSA:3.40.630.30 717 880 5.7E-42 T 14-10-2018 YP_0659 347a23c45495586dcdb32bb3a53ddfbf 880 Gene3D G3DSA:3.40.50.261 285 455 9.7E-44 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YP_0659 347a23c45495586dcdb32bb3a53ddfbf 880 SUPERFAMILY SSF51735 2 136 2.03E-31 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0659 347a23c45495586dcdb32bb3a53ddfbf 880 SUPERFAMILY SSF52210 287 447 6.8E-38 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YP_0659 347a23c45495586dcdb32bb3a53ddfbf 880 Pfam PF13380 CoA binding domain 13 129 1.5E-20 T 14-10-2018 IPR003781 CoA-binding GO:0048037 YP_0659 347a23c45495586dcdb32bb3a53ddfbf 880 SUPERFAMILY SSF52210 125 286 7.06E-37 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YP_0659 347a23c45495586dcdb32bb3a53ddfbf 880 Gene3D G3DSA:3.30.1490.20 499 576 1.8E-55 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YP_0659 347a23c45495586dcdb32bb3a53ddfbf 880 Gene3D G3DSA:3.40.50.261 131 283 1.2E-47 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YP_0659 347a23c45495586dcdb32bb3a53ddfbf 880 Pfam PF00583 Acetyltransferase (GNAT) family 761 863 2.2E-12 T 14-10-2018 IPR000182 GNAT domain YP_0659 347a23c45495586dcdb32bb3a53ddfbf 880 Gene3D G3DSA:3.40.50.720 2 130 1.6E-29 T 14-10-2018 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 Gene3D G3DSA:3.30.70.370 667 928 8.6E-116 T 14-10-2018 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 Pfam PF01612 3'-5' exonuclease 333 520 2.7E-44 T 14-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 Gene3D G3DSA:3.40.50.1010 9 284 1.4E-96 T 14-10-2018 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 272 6.4E-31 T 14-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 Gene3D G3DSA:1.10.150.20 712 855 8.6E-116 T 14-10-2018 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 TIGRFAM TIGR00593 pola: DNA polymerase I 9 932 2.3E-287 T 14-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 Gene3D G3DSA:1.20.1060.10 546 661 3.8E-40 T 14-10-2018 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 SUPERFAMILY SSF53098 329 521 2.01E-58 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 SMART SM00475 7 268 5.1E-140 T 14-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 Gene3D G3DSA:3.30.420.10 329 545 5.1E-74 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 SMART SM00482 689 896 1.9E-115 T 14-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 SUPERFAMILY SSF88723 7 170 2.45E-57 T 14-10-2018 IPR029060 PIN-like domain superfamily YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 Gene3D G3DSA:1.10.150.20 174 253 1.4E-96 T 14-10-2018 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 9 170 1.5E-54 T 14-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 SUPERFAMILY SSF47807 171 291 1.26E-31 T 14-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 Pfam PF00476 DNA polymerase family A 555 929 1.1E-155 T 14-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 SMART SM00474 333 520 8.8E-48 T 14-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 ProSitePatterns PS00447 DNA polymerase family A signature. 757 776 - T 14-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 SUPERFAMILY SSF56672 525 932 2.89E-157 T 14-10-2018 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 SMART SM00279 173 208 1.2E-13 T 14-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 658 680 2.7E-79 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 681 696 2.7E-79 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 879 892 2.7E-79 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 794 805 2.7E-79 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 733 746 2.7E-79 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 703 726 2.7E-79 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 848 864 2.7E-79 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 816 827 2.7E-79 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_0018 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 757 782 2.7E-79 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_2362 0299365bfc70e93586f992d66e8cb26e 461 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 358 369 - T 14-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2362 0299365bfc70e93586f992d66e8cb26e 461 SUPERFAMILY SSF142984 257 339 6.28E-22 T 14-10-2018 YP_2362 0299365bfc70e93586f992d66e8cb26e 461 Gene3D G3DSA:3.10.20.600 248 342 2.1E-28 T 14-10-2018 YP_2362 0299365bfc70e93586f992d66e8cb26e 461 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 20 432 2.9E-201 T 14-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2362 0299365bfc70e93586f992d66e8cb26e 461 SUPERFAMILY SSF140490 343 433 7.72E-31 T 14-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2362 0299365bfc70e93586f992d66e8cb26e 461 SMART SM00928 345 390 2.4E-21 T 14-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2362 0299365bfc70e93586f992d66e8cb26e 461 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 61 233 3.6E-50 T 14-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2362 0299365bfc70e93586f992d66e8cb26e 461 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 348 430 5.1E-26 T 14-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2362 0299365bfc70e93586f992d66e8cb26e 461 Gene3D G3DSA:1.20.1440.230 343 443 1.1E-27 T 14-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2362 0299365bfc70e93586f992d66e8cb26e 461 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 181 196 - T 14-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2362 0299365bfc70e93586f992d66e8cb26e 461 Gene3D G3DSA:3.40.50.11540 66 245 2.0E-78 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2362 0299365bfc70e93586f992d66e8cb26e 461 SUPERFAMILY SSF142019 23 252 1.31E-85 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_0231 f6d97c4f5674721605c1c4c9ef0497c7 206 Gene3D G3DSA:1.10.1050.10 1 102 7.6E-46 T 14-10-2018 YP_0231 f6d97c4f5674721605c1c4c9ef0497c7 206 Pfam PF01479 S4 domain 97 143 7.2E-18 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0231 f6d97c4f5674721605c1c4c9ef0497c7 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 8.6E-86 T 14-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 YP_0231 f6d97c4f5674721605c1c4c9ef0497c7 206 Gene3D G3DSA:3.10.290.10 103 191 3.5E-36 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YP_0231 f6d97c4f5674721605c1c4c9ef0497c7 206 SUPERFAMILY SSF55174 3 206 6.54E-72 T 14-10-2018 YP_0231 f6d97c4f5674721605c1c4c9ef0497c7 206 SMART SM00363 96 160 8.2E-20 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0231 f6d97c4f5674721605c1c4c9ef0497c7 206 SMART SM01390 3 95 6.1E-50 T 14-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 YP_0231 f6d97c4f5674721605c1c4c9ef0497c7 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 36.196 T 14-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 YP_0231 f6d97c4f5674721605c1c4c9ef0497c7 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 14-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0231 f6d97c4f5674721605c1c4c9ef0497c7 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 6.8E-33 T 14-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 YP_3033 b0585634394694468f86f8db43e95ab3 305 Pfam PF13144 Chaperone for flagella basal body P-ring formation 97 299 4.7E-55 T 14-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YP_3033 b0585634394694468f86f8db43e95ab3 305 SMART SM00858 176 238 1.3E-9 T 14-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 YP_3033 b0585634394694468f86f8db43e95ab3 305 Gene3D G3DSA:2.30.30.760 241 303 1.1E-9 T 14-10-2018 YP_3033 b0585634394694468f86f8db43e95ab3 305 Gene3D G3DSA:3.90.1210.10 177 240 3.2E-5 T 14-10-2018 YP_3033 b0585634394694468f86f8db43e95ab3 305 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 164 299 1.2E-39 T 14-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YP_0943 7a58ad963b423a40460e23673f0daba7 471 Gene3D G3DSA:1.20.1340.10 1 81 2.5E-29 T 14-10-2018 YP_0943 7a58ad963b423a40460e23673f0daba7 471 SUPERFAMILY SSF53383 1 470 2.66E-125 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_0943 7a58ad963b423a40460e23673f0daba7 471 Gene3D G3DSA:3.40.640.10 84 369 6.2E-90 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_0943 7a58ad963b423a40460e23673f0daba7 471 Gene3D G3DSA:3.90.1150.10 370 471 1.3E-11 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_0943 7a58ad963b423a40460e23673f0daba7 471 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 35 402 2.1E-96 T 14-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 YP_0943 7a58ad963b423a40460e23673f0daba7 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 6 25 7.1E-43 T 14-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YP_0943 7a58ad963b423a40460e23673f0daba7 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 47 66 7.1E-43 T 14-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YP_0943 7a58ad963b423a40460e23673f0daba7 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 73 92 7.1E-43 T 14-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YP_0943 7a58ad963b423a40460e23673f0daba7 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 342 357 7.1E-43 T 14-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YP_0943 7a58ad963b423a40460e23673f0daba7 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 385 404 7.1E-43 T 14-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YP_0943 7a58ad963b423a40460e23673f0daba7 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 113 132 7.1E-43 T 14-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YP_0943 7a58ad963b423a40460e23673f0daba7 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 29 46 7.1E-43 T 14-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YP_0943 7a58ad963b423a40460e23673f0daba7 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 94 112 7.1E-43 T 14-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YP_1266 87af8d1c8680733b7646e0e25d051946 562 Gene3D G3DSA:3.30.70.1450 223 285 2.0E-9 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YP_1266 87af8d1c8680733b7646e0e25d051946 562 Pfam PF02080 TrkA-C domain 305 372 1.5E-9 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YP_1266 87af8d1c8680733b7646e0e25d051946 562 Pfam PF02080 TrkA-C domain 227 278 5.8E-9 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YP_1266 87af8d1c8680733b7646e0e25d051946 562 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 390 541 3.9E-47 T 14-10-2018 IPR006512 YidE/YbjL duplication YP_1266 87af8d1c8680733b7646e0e25d051946 562 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 21 169 1.5E-39 T 14-10-2018 IPR006512 YidE/YbjL duplication YP_1266 87af8d1c8680733b7646e0e25d051946 562 SUPERFAMILY SSF116726 227 282 1.7E-10 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YP_1266 87af8d1c8680733b7646e0e25d051946 562 SUPERFAMILY SSF116726 291 374 5.23E-11 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YP_1266 87af8d1c8680733b7646e0e25d051946 562 Gene3D G3DSA:3.30.70.1450 299 373 6.4E-7 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YP_1266 87af8d1c8680733b7646e0e25d051946 562 Pfam PF06826 Predicted Permease Membrane Region 17 182 8.0E-39 T 14-10-2018 IPR006512 YidE/YbjL duplication YP_1266 87af8d1c8680733b7646e0e25d051946 562 Pfam PF06826 Predicted Permease Membrane Region 386 554 8.3E-42 T 14-10-2018 IPR006512 YidE/YbjL duplication YP_1266 87af8d1c8680733b7646e0e25d051946 562 Hamap MF_01015 Putative transport protein YbjL [ybjL]. 1 557 59.381 T 14-10-2018 IPR023017 Transport protein YbjL, putative YP_2548 529623d23d9d125723799d1f28385b5a 417 SUPERFAMILY SSF53383 6 416 3.99E-180 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_2548 529623d23d9d125723799d1f28385b5a 417 Gene3D G3DSA:3.40.640.10 37 289 1.5E-182 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_2548 529623d23d9d125723799d1f28385b5a 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 52.153 T 14-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 YP_2548 529623d23d9d125723799d1f28385b5a 417 PIRSF PIRSF000412 1 417 1.5E-168 T 14-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 YP_2548 529623d23d9d125723799d1f28385b5a 417 Pfam PF00464 Serine hydroxymethyltransferase 8 386 1.9E-184 T 14-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 YP_2548 529623d23d9d125723799d1f28385b5a 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 14-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 YP_2548 529623d23d9d125723799d1f28385b5a 417 Gene3D G3DSA:3.90.1150.10 10 395 1.5E-182 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_0392 6e5bf488742427193f225aac558db24f 186 Pfam PF05239 PRC-barrel domain 107 181 4.1E-9 T 14-10-2018 IPR027275 PRC-barrel domain YP_0392 6e5bf488742427193f225aac558db24f 186 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 17 186 24.289 T 14-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 YP_0392 6e5bf488742427193f225aac558db24f 186 SUPERFAMILY SSF50346 110 186 2.35E-19 T 14-10-2018 IPR011033 PRC-barrel-like superfamily YP_0392 6e5bf488742427193f225aac558db24f 186 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 18 186 5.3E-60 T 14-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 YP_0392 6e5bf488742427193f225aac558db24f 186 Gene3D G3DSA:2.40.30.60 9 104 3.1E-34 T 14-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 YP_0392 6e5bf488742427193f225aac558db24f 186 SUPERFAMILY SSF50447 17 103 9.53E-24 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YP_0392 6e5bf488742427193f225aac558db24f 186 Gene3D G3DSA:2.30.30.240 105 186 1.6E-31 T 14-10-2018 YP_0392 6e5bf488742427193f225aac558db24f 186 Pfam PF01782 RimM N-terminal domain 20 99 9.4E-26 T 14-10-2018 IPR002676 RimM, N-terminal GO:0006364 YP_3430 03d94e9411577dd0a0f28f03cbe36c59 590 Pfam PF00005 ABC transporter 355 502 6.3E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3430 03d94e9411577dd0a0f28f03cbe36c59 590 Gene3D G3DSA:3.40.50.300 330 583 1.9E-76 T 14-10-2018 YP_3430 03d94e9411577dd0a0f28f03cbe36c59 590 SUPERFAMILY SSF52540 328 571 3.8E-78 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3430 03d94e9411577dd0a0f28f03cbe36c59 590 SUPERFAMILY SSF90123 9 330 3.01E-52 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_3430 03d94e9411577dd0a0f28f03cbe36c59 590 ProSitePatterns PS00211 ABC transporters family signature. 474 488 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3430 03d94e9411577dd0a0f28f03cbe36c59 590 Gene3D G3DSA:1.20.1560.10 1 326 8.9E-46 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_3430 03d94e9411577dd0a0f28f03cbe36c59 590 SMART SM00382 364 548 1.8E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3430 03d94e9411577dd0a0f28f03cbe36c59 590 Pfam PF00664 ABC transporter transmembrane region 23 292 2.7E-21 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YP_2335 da44e54a1cdb09118e6c0d11cf0ac1ae 323 SUPERFAMILY SSF51604 108 307 1.83E-51 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YP_2335 da44e54a1cdb09118e6c0d11cf0ac1ae 323 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 4 321 23.61 T 14-10-2018 IPR010196 o-Succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 YP_2335 da44e54a1cdb09118e6c0d11cf0ac1ae 323 Gene3D G3DSA:3.20.20.120 98 295 2.1E-126 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YP_2335 da44e54a1cdb09118e6c0d11cf0ac1ae 323 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 7 307 4.1E-116 T 14-10-2018 YP_2335 da44e54a1cdb09118e6c0d11cf0ac1ae 323 SUPERFAMILY SSF54826 1 98 1.77E-28 T 14-10-2018 YP_2335 da44e54a1cdb09118e6c0d11cf0ac1ae 323 SMART SM00922 115 210 5.6E-9 T 14-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_2335 da44e54a1cdb09118e6c0d11cf0ac1ae 323 Pfam PF13378 Enolase C-terminal domain-like 127 282 2.9E-14 T 14-10-2018 IPR029065 Enolase C-terminal domain-like YP_2335 da44e54a1cdb09118e6c0d11cf0ac1ae 323 Gene3D G3DSA:3.30.390.10 4 302 2.1E-126 T 14-10-2018 IPR029017 Enolase-like, N-terminal YP_3892 c2250f86321038bd4c4387822f5288a7 355 Pfam PF01207 Dihydrouridine synthase (Dus) 48 352 5.5E-114 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 YP_3892 c2250f86321038bd4c4387822f5288a7 355 Gene3D G3DSA:1.10.1200.80 287 355 6.3E-7 T 14-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 YP_3892 c2250f86321038bd4c4387822f5288a7 355 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 37 353 5.0E-134 T 14-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 YP_3892 c2250f86321038bd4c4387822f5288a7 355 SUPERFAMILY SSF51395 45 353 8.79E-88 T 14-10-2018 YP_3892 c2250f86321038bd4c4387822f5288a7 355 Gene3D G3DSA:3.20.20.70 41 282 1.4E-75 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3892 c2250f86321038bd4c4387822f5288a7 355 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 35 355 48.789 T 14-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 YP_3892 c2250f86321038bd4c4387822f5288a7 355 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 128 146 - T 14-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 YP_3892 c2250f86321038bd4c4387822f5288a7 355 PIRSF PIRSF006621 34 355 6.1E-99 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 YP_3705 4015c46e21954b3adaabcd4df6def05a 938 Pfam PF08264 Anticodon-binding domain of tRNA 685 840 4.0E-30 T 14-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 YP_3705 4015c46e21954b3adaabcd4df6def05a 938 SUPERFAMILY SSF50677 204 403 3.03E-54 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 YP_3705 4015c46e21954b3adaabcd4df6def05a 938 Gene3D G3DSA:1.10.730.20 640 929 2.8E-94 T 14-10-2018 YP_3705 4015c46e21954b3adaabcd4df6def05a 938 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 929 21.367 T 14-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 YP_3705 4015c46e21954b3adaabcd4df6def05a 938 SUPERFAMILY SSF47323 652 929 2.24E-79 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_3705 4015c46e21954b3adaabcd4df6def05a 938 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 843 3.8E-298 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 YP_3705 4015c46e21954b3adaabcd4df6def05a 938 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 640 7.3E-222 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_3705 4015c46e21954b3adaabcd4df6def05a 938 Gene3D G3DSA:3.40.50.620 25 629 8.8E-230 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_3705 4015c46e21954b3adaabcd4df6def05a 938 SUPERFAMILY SSF52374 3 647 4.06E-136 T 14-10-2018 YP_3705 4015c46e21954b3adaabcd4df6def05a 938 Pfam PF06827 Zinc finger found in FPG and IleRS 898 926 7.2E-10 T 14-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 YP_3705 4015c46e21954b3adaabcd4df6def05a 938 Gene3D G3DSA:3.90.740.10 195 408 8.8E-230 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 YP_3705 4015c46e21954b3adaabcd4df6def05a 938 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_3705 4015c46e21954b3adaabcd4df6def05a 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 401 416 1.1E-31 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 YP_3705 4015c46e21954b3adaabcd4df6def05a 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 526 539 1.1E-31 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 YP_3705 4015c46e21954b3adaabcd4df6def05a 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 1.1E-31 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 YP_3705 4015c46e21954b3adaabcd4df6def05a 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 238 261 1.1E-31 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 YP_3705 4015c46e21954b3adaabcd4df6def05a 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 561 570 1.1E-31 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 YP_0983 57aa31abae75ddb25af2d877380fe1cf 430 Pfam PF00158 Sigma-54 interaction domain 119 285 7.6E-69 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 YP_0983 57aa31abae75ddb25af2d877380fe1cf 430 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 143 156 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YP_0983 57aa31abae75ddb25af2d877380fe1cf 430 SUPERFAMILY SSF52172 2 163 5.55E-42 T 14-10-2018 IPR011006 CheY-like superfamily YP_0983 57aa31abae75ddb25af2d877380fe1cf 430 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 412 430 2.3E-11 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YP_0983 57aa31abae75ddb25af2d877380fe1cf 430 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 395 412 2.3E-11 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YP_0983 57aa31abae75ddb25af2d877380fe1cf 430 SMART SM00448 1 93 6.3E-18 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0983 57aa31abae75ddb25af2d877380fe1cf 430 Pfam PF02954 Bacterial regulatory protein, Fis family 389 428 2.3E-13 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YP_0983 57aa31abae75ddb25af2d877380fe1cf 430 SMART SM00382 139 282 3.8E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0983 57aa31abae75ddb25af2d877380fe1cf 430 Gene3D G3DSA:3.40.50.2300 1 119 3.1E-34 T 14-10-2018 YP_0983 57aa31abae75ddb25af2d877380fe1cf 430 SUPERFAMILY SSF52540 118 361 5.05E-70 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0983 57aa31abae75ddb25af2d877380fe1cf 430 Gene3D G3DSA:1.10.8.60 290 368 1.1E-30 T 14-10-2018 YP_0983 57aa31abae75ddb25af2d877380fe1cf 430 Gene3D G3DSA:3.40.50.300 120 289 3.3E-60 T 14-10-2018 YP_0983 57aa31abae75ddb25af2d877380fe1cf 430 Gene3D G3DSA:1.10.10.60 384 427 7.2E-15 T 14-10-2018 YP_0983 57aa31abae75ddb25af2d877380fe1cf 430 Pfam PF00072 Response regulator receiver domain 5 91 8.4E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0983 57aa31abae75ddb25af2d877380fe1cf 430 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 332 341 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site YP_0983 57aa31abae75ddb25af2d877380fe1cf 430 SUPERFAMILY SSF46689 332 428 8.96E-14 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0023 1c0508bf504651d2ab67a637e95fec42 493 SMART SM00382 184 335 6.2E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0023 1c0508bf504651d2ab67a637e95fec42 493 Pfam PF00158 Sigma-54 interaction domain 164 330 2.2E-68 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 YP_0023 1c0508bf504651d2ab67a637e95fec42 493 SMART SM00448 27 138 8.5E-37 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0023 1c0508bf504651d2ab67a637e95fec42 493 Gene3D G3DSA:3.40.50.2300 24 147 1.5E-45 T 14-10-2018 YP_0023 1c0508bf504651d2ab67a637e95fec42 493 SUPERFAMILY SSF46689 404 493 2.15E-24 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0023 1c0508bf504651d2ab67a637e95fec42 493 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 29 490 2.9E-242 T 14-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 YP_0023 1c0508bf504651d2ab67a637e95fec42 493 SUPERFAMILY SSF52172 29 209 2.85E-47 T 14-10-2018 IPR011006 CheY-like superfamily YP_0023 1c0508bf504651d2ab67a637e95fec42 493 SUPERFAMILY SSF52540 163 407 3.01E-71 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0023 1c0508bf504651d2ab67a637e95fec42 493 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 188 201 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YP_0023 1c0508bf504651d2ab67a637e95fec42 493 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 250 265 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YP_0023 1c0508bf504651d2ab67a637e95fec42 493 Pfam PF00072 Response regulator receiver domain 29 138 6.9E-31 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0023 1c0508bf504651d2ab67a637e95fec42 493 Gene3D G3DSA:3.40.50.300 152 334 3.9E-64 T 14-10-2018 YP_0023 1c0508bf504651d2ab67a637e95fec42 493 Gene3D G3DSA:1.10.10.60 403 493 1.8E-28 T 14-10-2018 YP_0023 1c0508bf504651d2ab67a637e95fec42 493 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 473 493 8.7E-11 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YP_0023 1c0508bf504651d2ab67a637e95fec42 493 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 456 473 8.7E-11 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YP_0023 1c0508bf504651d2ab67a637e95fec42 493 Gene3D G3DSA:1.10.8.60 335 401 3.9E-19 T 14-10-2018 YP_0023 1c0508bf504651d2ab67a637e95fec42 493 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 377 386 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site YP_0023 1c0508bf504651d2ab67a637e95fec42 493 Pfam PF02954 Bacterial regulatory protein, Fis family 451 490 1.8E-15 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YP_1564 39c1f91c61d5ff0fe2b0d58e6de7837e 245 Pfam PF02108 Flagellar assembly protein FliH 113 236 2.5E-39 T 14-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YP_1564 39c1f91c61d5ff0fe2b0d58e6de7837e 245 PRINTS PR01003 Flagellar assembly protein FliH signature 15 34 1.8E-73 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YP_1564 39c1f91c61d5ff0fe2b0d58e6de7837e 245 PRINTS PR01003 Flagellar assembly protein FliH signature 173 200 1.8E-73 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YP_1564 39c1f91c61d5ff0fe2b0d58e6de7837e 245 PRINTS PR01003 Flagellar assembly protein FliH signature 70 92 1.8E-73 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YP_1564 39c1f91c61d5ff0fe2b0d58e6de7837e 245 PRINTS PR01003 Flagellar assembly protein FliH signature 150 172 1.8E-73 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YP_1564 39c1f91c61d5ff0fe2b0d58e6de7837e 245 PRINTS PR01003 Flagellar assembly protein FliH signature 218 243 1.8E-73 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YP_1564 39c1f91c61d5ff0fe2b0d58e6de7837e 245 PRINTS PR01003 Flagellar assembly protein FliH signature 132 149 1.8E-73 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YP_1564 39c1f91c61d5ff0fe2b0d58e6de7837e 245 PRINTS PR01003 Flagellar assembly protein FliH signature 93 111 1.8E-73 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YP_1564 39c1f91c61d5ff0fe2b0d58e6de7837e 245 PRINTS PR01003 Flagellar assembly protein FliH signature 112 131 1.8E-73 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YP_1564 39c1f91c61d5ff0fe2b0d58e6de7837e 245 PRINTS PR01003 Flagellar assembly protein FliH signature 201 217 1.8E-73 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YP_1887 ff3655c0a6af21fd90f3d1128b3eaffd 553 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 207 515 3.0E-87 T 14-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal YP_1887 ff3655c0a6af21fd90f3d1128b3eaffd 553 Pfam PF08479 POTRA domain, ShlB-type 77 150 1.4E-18 T 14-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type YP_1887 ff3655c0a6af21fd90f3d1128b3eaffd 553 Pfam PF17287 POTRA domain 152 202 4.4E-12 T 14-10-2018 IPR035251 ShlB, POTRA domain YP_1887 ff3655c0a6af21fd90f3d1128b3eaffd 553 PIRSF PIRSF029745 4 553 8.8E-102 T 14-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 YP_1887 ff3655c0a6af21fd90f3d1128b3eaffd 553 Gene3D G3DSA:3.10.20.310 57 150 2.7E-10 T 14-10-2018 YP_1887 ff3655c0a6af21fd90f3d1128b3eaffd 553 Gene3D G3DSA:2.40.160.50 179 552 2.0E-62 T 14-10-2018 YP_2702 af17a977be6657f234b829bddec54554 749 SUPERFAMILY SSF82171 193 410 1.1E-10 T 14-10-2018 YP_2702 af17a977be6657f234b829bddec54554 749 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 467 739 1.6E-10 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2702 af17a977be6657f234b829bddec54554 749 SUPERFAMILY SSF161098 524 732 2.22E-20 T 14-10-2018 IPR035906 MetI-like superfamily YP_2702 af17a977be6657f234b829bddec54554 749 SUPERFAMILY SSF161098 439 516 8.37E-6 T 14-10-2018 IPR035906 MetI-like superfamily YP_3944 b5f920b0bedf680d38dd52abd931084b 800 Gene3D G3DSA:3.30.1920.30 385 448 2.2E-93 T 14-10-2018 YP_3944 b5f920b0bedf680d38dd52abd931084b 800 SUPERFAMILY SSF69279 353 527 9.35E-42 T 14-10-2018 YP_3944 b5f920b0bedf680d38dd52abd931084b 800 SUPERFAMILY SSF69279 174 349 2.81E-56 T 14-10-2018 YP_3944 b5f920b0bedf680d38dd52abd931084b 800 Pfam PF05954 Phage late control gene D protein (GPD) 194 491 8.0E-83 T 14-10-2018 YP_3944 b5f920b0bedf680d38dd52abd931084b 800 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 186 665 7.8E-192 T 14-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YP_3944 b5f920b0bedf680d38dd52abd931084b 800 Gene3D G3DSA:2.40.50.230 519 619 2.5E-42 T 14-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YP_3944 b5f920b0bedf680d38dd52abd931084b 800 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 173 682 6.9E-202 T 14-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YP_3944 b5f920b0bedf680d38dd52abd931084b 800 Gene3D G3DSA:3.55.50.10 262 353 2.2E-93 T 14-10-2018 YP_3944 b5f920b0bedf680d38dd52abd931084b 800 SUPERFAMILY SSF69255 526 613 6.8E-34 T 14-10-2018 YP_3944 b5f920b0bedf680d38dd52abd931084b 800 SUPERFAMILY SSF69349 604 792 1.57E-41 T 14-10-2018 YP_3944 b5f920b0bedf680d38dd52abd931084b 800 Gene3D G3DSA:2.30.110.50 186 491 2.2E-93 T 14-10-2018 YP_3801 911bebb9c04da28bcb1be81005777f26 299 Gene3D G3DSA:3.40.1010.10 2 120 8.7E-47 T 14-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 YP_3801 911bebb9c04da28bcb1be81005777f26 299 Gene3D G3DSA:3.30.950.10 121 241 5.6E-42 T 14-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 YP_3801 911bebb9c04da28bcb1be81005777f26 299 PIRSF PIRSF005917 2 288 7.5E-107 T 14-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 YP_3801 911bebb9c04da28bcb1be81005777f26 299 SUPERFAMILY SSF53790 13 232 3.79E-83 T 14-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 YP_3801 911bebb9c04da28bcb1be81005777f26 299 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 91 102 - T 14-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 YP_3801 911bebb9c04da28bcb1be81005777f26 299 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 13 213 5.7E-26 T 14-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 YP_3801 911bebb9c04da28bcb1be81005777f26 299 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 13 234 38.28 T 14-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 YP_3801 911bebb9c04da28bcb1be81005777f26 299 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 14 284 1.1E-110 T 14-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 YP_1201 386e11b32d903483c0f9c22256234941 557 PIRSF PIRSF002111 1 534 7.9E-217 T 14-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 YP_1201 386e11b32d903483c0f9c22256234941 557 Gene3D G3DSA:2.40.50.140 187 268 1.1E-27 T 14-10-2018 YP_1201 386e11b32d903483c0f9c22256234941 557 Gene3D G3DSA:2.40.50.140 445 528 7.1E-19 T 14-10-2018 YP_1201 386e11b32d903483c0f9c22256234941 557 Gene3D G3DSA:2.40.50.140 98 181 4.6E-7 T 14-10-2018 YP_1201 386e11b32d903483c0f9c22256234941 557 Gene3D G3DSA:2.40.50.140 358 444 1.6E-22 T 14-10-2018 YP_1201 386e11b32d903483c0f9c22256234941 557 Gene3D G3DSA:2.40.50.140 269 357 1.2E-29 T 14-10-2018 YP_1201 386e11b32d903483c0f9c22256234941 557 Gene3D G3DSA:2.40.50.140 6 97 3.1E-17 T 14-10-2018 YP_1201 386e11b32d903483c0f9c22256234941 557 SUPERFAMILY SSF50249 429 533 2.91E-21 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_1201 386e11b32d903483c0f9c22256234941 557 SUPERFAMILY SSF50249 189 275 7.46E-27 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_1201 386e11b32d903483c0f9c22256234941 557 SUPERFAMILY SSF50249 1 112 4.52E-19 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_1201 386e11b32d903483c0f9c22256234941 557 Pfam PF00575 S1 RNA binding domain 449 520 1.8E-14 T 14-10-2018 IPR003029 S1 domain GO:0003676 YP_1201 386e11b32d903483c0f9c22256234941 557 Pfam PF00575 S1 RNA binding domain 20 78 6.7E-7 T 14-10-2018 IPR003029 S1 domain GO:0003676 YP_1201 386e11b32d903483c0f9c22256234941 557 Pfam PF00575 S1 RNA binding domain 279 347 2.8E-19 T 14-10-2018 IPR003029 S1 domain GO:0003676 YP_1201 386e11b32d903483c0f9c22256234941 557 Pfam PF00575 S1 RNA binding domain 190 260 2.4E-21 T 14-10-2018 IPR003029 S1 domain GO:0003676 YP_1201 386e11b32d903483c0f9c22256234941 557 Pfam PF00575 S1 RNA binding domain 103 171 6.9E-10 T 14-10-2018 IPR003029 S1 domain GO:0003676 YP_1201 386e11b32d903483c0f9c22256234941 557 Pfam PF00575 S1 RNA binding domain 361 434 3.3E-21 T 14-10-2018 IPR003029 S1 domain GO:0003676 YP_1201 386e11b32d903483c0f9c22256234941 557 SUPERFAMILY SSF50249 363 444 4.77E-20 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_1201 386e11b32d903483c0f9c22256234941 557 SMART SM00316 275 347 6.5E-26 T 14-10-2018 IPR022967 RNA-binding domain, S1 YP_1201 386e11b32d903483c0f9c22256234941 557 SMART SM00316 19 87 5.0E-5 T 14-10-2018 IPR022967 RNA-binding domain, S1 YP_1201 386e11b32d903483c0f9c22256234941 557 SMART SM00316 362 434 1.8E-20 T 14-10-2018 IPR022967 RNA-binding domain, S1 YP_1201 386e11b32d903483c0f9c22256234941 557 SMART SM00316 103 171 8.1E-9 T 14-10-2018 IPR022967 RNA-binding domain, S1 YP_1201 386e11b32d903483c0f9c22256234941 557 SMART SM00316 190 260 2.8E-28 T 14-10-2018 IPR022967 RNA-binding domain, S1 YP_1201 386e11b32d903483c0f9c22256234941 557 SMART SM00316 449 520 2.9E-20 T 14-10-2018 IPR022967 RNA-binding domain, S1 YP_1201 386e11b32d903483c0f9c22256234941 557 SUPERFAMILY SSF50249 255 371 1.37E-29 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_1201 386e11b32d903483c0f9c22256234941 557 SUPERFAMILY SSF50249 104 185 4.25E-14 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_1201 386e11b32d903483c0f9c22256234941 557 PRINTS PR00681 Ribosomal protein S1 signature 155 175 6.7E-99 T 14-10-2018 YP_1201 386e11b32d903483c0f9c22256234941 557 PRINTS PR00681 Ribosomal protein S1 signature 330 348 6.7E-99 T 14-10-2018 YP_1201 386e11b32d903483c0f9c22256234941 557 PRINTS PR00681 Ribosomal protein S1 signature 84 103 6.7E-99 T 14-10-2018 YP_1201 386e11b32d903483c0f9c22256234941 557 PRINTS PR00681 Ribosomal protein S1 signature 126 143 6.7E-99 T 14-10-2018 YP_1201 386e11b32d903483c0f9c22256234941 557 PRINTS PR00681 Ribosomal protein S1 signature 21 39 6.7E-99 T 14-10-2018 YP_1201 386e11b32d903483c0f9c22256234941 557 PRINTS PR00681 Ribosomal protein S1 signature 212 233 6.7E-99 T 14-10-2018 YP_1201 386e11b32d903483c0f9c22256234941 557 PRINTS PR00681 Ribosomal protein S1 signature 290 309 6.7E-99 T 14-10-2018 YP_1201 386e11b32d903483c0f9c22256234941 557 PRINTS PR00681 Ribosomal protein S1 signature 39 53 6.7E-99 T 14-10-2018 YP_1201 386e11b32d903483c0f9c22256234941 557 PRINTS PR00681 Ribosomal protein S1 signature 108 124 6.7E-99 T 14-10-2018 YP_1201 386e11b32d903483c0f9c22256234941 557 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 1.0E-235 T 14-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 YP_0814 8a227cb5abb67e0eed1bcdebe52f77c4 329 PRINTS PR00410 Phenol hydroxylase reductase family signature 204 223 1.1E-24 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YP_0814 8a227cb5abb67e0eed1bcdebe52f77c4 329 PRINTS PR00410 Phenol hydroxylase reductase family signature 229 238 1.1E-24 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YP_0814 8a227cb5abb67e0eed1bcdebe52f77c4 329 PRINTS PR00410 Phenol hydroxylase reductase family signature 130 142 1.1E-24 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YP_0814 8a227cb5abb67e0eed1bcdebe52f77c4 329 PRINTS PR00410 Phenol hydroxylase reductase family signature 189 198 1.1E-24 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YP_0814 8a227cb5abb67e0eed1bcdebe52f77c4 329 PRINTS PR00410 Phenol hydroxylase reductase family signature 293 301 1.1E-24 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YP_0814 8a227cb5abb67e0eed1bcdebe52f77c4 329 PRINTS PR00410 Phenol hydroxylase reductase family signature 145 152 1.1E-24 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YP_0814 8a227cb5abb67e0eed1bcdebe52f77c4 329 SUPERFAMILY SSF63380 100 195 1.58E-22 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YP_0814 8a227cb5abb67e0eed1bcdebe52f77c4 329 Gene3D G3DSA:3.10.20.30 1 96 1.4E-25 T 14-10-2018 IPR012675 Beta-grasp domain superfamily YP_0814 8a227cb5abb67e0eed1bcdebe52f77c4 329 SUPERFAMILY SSF54292 2 96 1.21E-26 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YP_0814 8a227cb5abb67e0eed1bcdebe52f77c4 329 SUPERFAMILY SSF52343 198 327 1.03E-33 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_0814 8a227cb5abb67e0eed1bcdebe52f77c4 329 Gene3D G3DSA:3.40.50.80 197 326 5.9E-27 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_0814 8a227cb5abb67e0eed1bcdebe52f77c4 329 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 79 2.4E-14 T 14-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 YP_0814 8a227cb5abb67e0eed1bcdebe52f77c4 329 Gene3D G3DSA:2.40.30.10 97 192 4.3E-22 T 14-10-2018 YP_0814 8a227cb5abb67e0eed1bcdebe52f77c4 329 Pfam PF00175 Oxidoreductase NAD-binding domain 205 307 3.2E-23 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 YP_0814 8a227cb5abb67e0eed1bcdebe52f77c4 329 Pfam PF00970 Oxidoreductase FAD-binding domain 103 194 2.4E-20 T 14-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 YP_0814 8a227cb5abb67e0eed1bcdebe52f77c4 329 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 14-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 YP_3396 cb51826e6fa41ca594d57d8e7ff1e841 397 Gene3D G3DSA:1.10.10.60 286 395 7.5E-29 T 14-10-2018 YP_3396 cb51826e6fa41ca594d57d8e7ff1e841 397 SUPERFAMILY SSF46689 343 392 2.8E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3396 cb51826e6fa41ca594d57d8e7ff1e841 397 Pfam PF12833 Helix-turn-helix domain 314 389 2.0E-17 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_3396 cb51826e6fa41ca594d57d8e7ff1e841 397 SUPERFAMILY SSF46689 289 337 2.02E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3396 cb51826e6fa41ca594d57d8e7ff1e841 397 SMART SM00342 306 389 6.3E-29 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_3396 cb51826e6fa41ca594d57d8e7ff1e841 397 Gene3D G3DSA:3.40.50.2300 8 274 4.2E-87 T 14-10-2018 YP_3396 cb51826e6fa41ca594d57d8e7ff1e841 397 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 343 385 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YP_3396 cb51826e6fa41ca594d57d8e7ff1e841 397 Pfam PF13377 Periplasmic binding protein-like domain 113 282 1.3E-32 T 14-10-2018 YP_3396 cb51826e6fa41ca594d57d8e7ff1e841 397 Gene3D G3DSA:3.40.50.2300 102 283 4.2E-87 T 14-10-2018 YP_3396 cb51826e6fa41ca594d57d8e7ff1e841 397 SUPERFAMILY SSF53822 10 304 1.69E-40 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_3396 cb51826e6fa41ca594d57d8e7ff1e841 397 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 358 373 5.7E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_3396 cb51826e6fa41ca594d57d8e7ff1e841 397 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 373 389 5.7E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 1233 1326 1.86E-18 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 652 742 8.44E-20 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 2314 2407 1.22E-17 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 1815 1902 1.8E-4 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 1717 1806 0.006 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 2215 2304 1.2E-7 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 2516 2602 1.1E-8 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 2717 2806 8.5E-11 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 1915 2002 6.2E-5 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 1329 1418 8.0E-9 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 2615 2705 0.015 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 1522 1612 2.5E-8 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 943 1032 1.6E-7 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 1040 1129 5.7E-11 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 2411 2503 0.0087 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 2115 2204 3.8E-4 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 2015 2104 4.3E-10 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 845 934 1.6E-7 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 1233 1321 3.0E-11 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 550 639 2.1E-12 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 1619 1709 0.011 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 650 739 1.8E-14 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 1426 1514 2.3E-11 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 2313 2402 2.6E-9 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 2815 2904 2.5E-9 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 746 835 0.016 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00634 1136 1225 3.4E-9 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 1621 1714 1.67E-13 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 2506 2596 7.65E-18 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 837 939 2.94E-18 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 945 1037 6.67E-17 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 550 643 1.04E-18 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 1710 1811 4.08E-18 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 2311 2405 1.4E-15 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 1229 1324 2.5E-17 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 645 740 9.1E-20 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 1326 1422 3.4E-15 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 2511 2602 1.5E-12 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 1911 2007 1.4E-14 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 1713 1809 1.4E-14 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 1423 1517 1.2E-17 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 1036 1131 8.0E-18 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 1518 1615 1.1E-15 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 1810 1905 3.3E-16 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 542 642 4.0E-17 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 1617 1712 4.2E-13 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 2810 2908 2.9E-16 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 2010 2107 5.8E-17 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 841 939 6.4E-16 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 2710 2809 9.1E-15 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 940 1035 1.4E-15 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 2612 2709 2.9E-8 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 743 837 2.1E-12 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 1132 1228 9.5E-16 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 2410 2507 1.9E-12 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 2110 2209 3.6E-17 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.10 2211 2309 1.2E-13 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 2608 2704 7.85E-15 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 2910 2991 2.55E-22 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 2403 2493 5.89E-15 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 747 840 6.28E-14 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.40.160.160 201 445 2.2E-111 T 14-10-2018 IPR038177 Inverse autotransporter, beta-domain superfamily YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 2207 2300 1.24E-17 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 1040 1133 7.46E-19 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 1329 1423 1.39E-16 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 2709 2811 1.35E-18 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 2815 2908 3.73E-17 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 2105 2210 8.44E-20 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 1522 1616 1.94E-17 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 1426 1519 1.77E-18 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 1136 1230 2.75E-17 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF11924 Inverse autotransporter, beta-domain 165 438 1.1E-116 T 14-10-2018 IPR024519 Inverse autotransporter, beta-domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 2005 2106 2.55E-19 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 1815 1906 3.92E-17 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SUPERFAMILY SSF49373 1903 2008 1.71E-17 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 1920 1998 1.3E-9 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 2422 2498 8.8E-9 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 2022 2104 4.6E-11 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 652 739 1.8E-12 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 2522 2596 8.2E-9 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 946 1029 9.8E-9 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 1428 1509 2.3E-8 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 2209 2295 4.7E-10 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 854 925 4.6E-11 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 1524 1612 2.0E-8 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 1332 1415 1.5E-8 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 1235 1318 1.9E-8 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 2720 2801 6.6E-8 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 553 641 1.7E-11 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 1139 1222 6.2E-9 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 1042 1129 1.9E-8 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF02369 Bacterial Ig-like domain (group 1) 2820 2903 3.6E-10 T 14-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:2.60.40.1080 2911 2997 2.1E-22 T 14-10-2018 YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 SMART SM00257 90 138 2.0E-6 T 14-10-2018 IPR018392 LysM domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Pfam PF01476 LysM domain 91 138 5.2E-6 T 14-10-2018 IPR018392 LysM domain YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 Gene3D G3DSA:3.10.350.10 79 148 1.6E-8 T 14-10-2018 IPR036779 LysM domain superfamily YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 PRINTS PR01369 Intimin signature 318 337 4.5E-12 T 14-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 PRINTS PR01369 Intimin signature 290 305 4.5E-12 T 14-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 PRINTS PR01369 Intimin signature 473 485 4.5E-12 T 14-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YP_3306 40c57d0f9e7d1c00f48d0e7199ff9533 3108 PRINTS PR01369 Intimin signature 386 405 4.5E-12 T 14-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YP_4020 ed45196deeb4cbd477033b2625599b29 240 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 13 221 5.7E-74 T 14-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 YP_4020 ed45196deeb4cbd477033b2625599b29 240 Gene3D G3DSA:1.20.58.220 1 121 6.4E-43 T 14-10-2018 IPR038078 PhoU-like domain superfamily YP_4020 ed45196deeb4cbd477033b2625599b29 240 Gene3D G3DSA:1.20.58.220 122 234 2.2E-32 T 14-10-2018 IPR038078 PhoU-like domain superfamily YP_4020 ed45196deeb4cbd477033b2625599b29 240 PIRSF PIRSF003107 7 226 9.7E-68 T 14-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 YP_4020 ed45196deeb4cbd477033b2625599b29 240 SUPERFAMILY SSF109755 13 230 1.78E-70 T 14-10-2018 YP_4020 ed45196deeb4cbd477033b2625599b29 240 Pfam PF01895 PhoU domain 128 212 7.3E-17 T 14-10-2018 IPR026022 PhoU domain YP_4020 ed45196deeb4cbd477033b2625599b29 240 Pfam PF01895 PhoU domain 26 111 2.5E-22 T 14-10-2018 IPR026022 PhoU domain YP_1319 ec42ac81c09ddc3598523b8ddc60d065 530 SMART SM00382 35 235 1.0E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1319 ec42ac81c09ddc3598523b8ddc60d065 530 SMART SM00382 312 502 3.3E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1319 ec42ac81c09ddc3598523b8ddc60d065 530 SUPERFAMILY SSF52540 279 525 3.17E-65 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1319 ec42ac81c09ddc3598523b8ddc60d065 530 Gene3D G3DSA:3.40.50.300 4 274 4.0E-78 T 14-10-2018 YP_1319 ec42ac81c09ddc3598523b8ddc60d065 530 Gene3D G3DSA:3.40.50.300 275 529 1.1E-81 T 14-10-2018 YP_1319 ec42ac81c09ddc3598523b8ddc60d065 530 SUPERFAMILY SSF52540 6 257 1.38E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1319 ec42ac81c09ddc3598523b8ddc60d065 530 Pfam PF00005 ABC transporter 303 454 3.3E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1319 ec42ac81c09ddc3598523b8ddc60d065 530 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 260 3.6E-4 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YP_1319 ec42ac81c09ddc3598523b8ddc60d065 530 ProSitePatterns PS00211 ABC transporters family signature. 426 440 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1319 ec42ac81c09ddc3598523b8ddc60d065 530 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1319 ec42ac81c09ddc3598523b8ddc60d065 530 Pfam PF00005 ABC transporter 27 185 2.3E-26 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3137 50bb697db991d84b9ce34b221787cdf9 367 Gene3D G3DSA:3.40.1350.30 45 189 2.8E-145 T 14-10-2018 YP_3137 50bb697db991d84b9ce34b221787cdf9 367 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 11 366 1.8E-196 T 14-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 YP_3137 50bb697db991d84b9ce34b221787cdf9 367 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 4 366 42.786 T 14-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 YP_3137 50bb697db991d84b9ce34b221787cdf9 367 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 299 328 - T 14-10-2018 IPR030390 RNA methyltransferase TrmA, active site YP_3137 50bb697db991d84b9ce34b221787cdf9 367 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 10 366 1.6E-191 T 14-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 YP_3137 50bb697db991d84b9ce34b221787cdf9 367 SUPERFAMILY SSF53335 7 365 7.71E-54 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3137 50bb697db991d84b9ce34b221787cdf9 367 Gene3D G3DSA:3.40.50.150 14 362 2.8E-145 T 14-10-2018 YP_3137 50bb697db991d84b9ce34b221787cdf9 367 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 348 358 - T 14-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site YP_0927 f5314017cd263a3846e1eb076bf70c02 397 Pfam PF00994 Probable molybdopterin binding domain 6 170 3.2E-32 T 14-10-2018 IPR001453 MoaB/Mog domain YP_0927 f5314017cd263a3846e1eb076bf70c02 397 SMART SM00852 5 172 1.4E-34 T 14-10-2018 IPR001453 MoaB/Mog domain YP_0927 f5314017cd263a3846e1eb076bf70c02 397 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 397 114.799 T 14-10-2018 IPR008135 Competence-induced protein CinA YP_0927 f5314017cd263a3846e1eb076bf70c02 397 Gene3D G3DSA:3.40.980.10 1 172 5.9E-48 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily YP_0927 f5314017cd263a3846e1eb076bf70c02 397 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 1 396 4.0E-117 T 14-10-2018 IPR008135 Competence-induced protein CinA YP_0927 f5314017cd263a3846e1eb076bf70c02 397 PIRSF PIRSF006728 1 385 1.0E-113 T 14-10-2018 IPR008135 Competence-induced protein CinA YP_0927 f5314017cd263a3846e1eb076bf70c02 397 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 165 2.7E-31 T 14-10-2018 IPR001453 MoaB/Mog domain YP_0927 f5314017cd263a3846e1eb076bf70c02 397 SUPERFAMILY SSF53218 1 203 3.01E-37 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily YP_3611 34c8a8a4851f96b74f168e25e85a000d 413 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 119 294 2.6E-52 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 YP_3611 34c8a8a4851f96b74f168e25e85a000d 413 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 14-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YP_3611 34c8a8a4851f96b74f168e25e85a000d 413 Gene3D G3DSA:3.30.70.260 328 412 1.6E-32 T 14-10-2018 YP_3611 34c8a8a4851f96b74f168e25e85a000d 413 SUPERFAMILY SSF55021 338 412 1.59E-19 T 14-10-2018 YP_3611 34c8a8a4851f96b74f168e25e85a000d 413 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YP_3611 34c8a8a4851f96b74f168e25e85a000d 413 SUPERFAMILY SSF51735 108 295 2.6E-57 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3611 34c8a8a4851f96b74f168e25e85a000d 413 SUPERFAMILY SSF52283 7 135 8.72E-49 T 14-10-2018 YP_3611 34c8a8a4851f96b74f168e25e85a000d 413 Gene3D G3DSA:3.40.50.720 14 312 2.7E-110 T 14-10-2018 YP_3611 34c8a8a4851f96b74f168e25e85a000d 413 Gene3D G3DSA:3.40.50.720 109 297 2.7E-110 T 14-10-2018 YP_3611 34c8a8a4851f96b74f168e25e85a000d 413 Pfam PF01842 ACT domain 347 404 9.5E-7 T 14-10-2018 IPR002912 ACT domain YP_3611 34c8a8a4851f96b74f168e25e85a000d 413 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 326 7.9E-37 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 YP_3611 34c8a8a4851f96b74f168e25e85a000d 413 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YP_1264 4fb9b927e55646cc660570b6c2cda65a 104 Pfam PF07214 Protein of unknown function (DUF1418) 1 97 1.8E-42 T 14-10-2018 IPR010815 Protein of unknown function DUF1418 YP_1321 5ff73e7ef8e09e76b705e32d437ea78b 399 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 10 390 1.6E-139 T 14-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 YP_1321 5ff73e7ef8e09e76b705e32d437ea78b 399 Gene3D G3DSA:1.20.1720.10 11 390 3.5E-102 T 14-10-2018 YP_1321 5ff73e7ef8e09e76b705e32d437ea78b 399 Pfam PF07690 Major Facilitator Superfamily 16 358 1.7E-46 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_1321 5ff73e7ef8e09e76b705e32d437ea78b 399 SUPERFAMILY SSF103473 5 394 1.15E-69 T 14-10-2018 IPR036259 MFS transporter superfamily YP_2344 e139cb3b0d0f0f8699b779403547171f 623 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 3 621 0.0 T 14-10-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 YP_2344 e139cb3b0d0f0f8699b779403547171f 623 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 525 536 - T 14-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YP_2344 e139cb3b0d0f0f8699b779403547171f 623 SUPERFAMILY SSF52016 439 620 3.92E-59 T 14-10-2018 YP_2344 e139cb3b0d0f0f8699b779403547171f 623 Gene3D G3DSA:3.50.30.80 439 588 1.1E-52 T 14-10-2018 YP_2344 e139cb3b0d0f0f8699b779403547171f 623 Pfam PF00920 Dehydratase family 67 618 8.5E-157 T 14-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YP_2344 e139cb3b0d0f0f8699b779403547171f 623 SUPERFAMILY SSF143975 1 438 1.31E-140 T 14-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YP_2344 e139cb3b0d0f0f8699b779403547171f 623 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 154 164 - T 14-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YP_2344 e139cb3b0d0f0f8699b779403547171f 623 Hamap MF_02094 Phosphogluconate dehydratase [edd]. 1 622 57.516 T 14-10-2018 YP_0073 6d034cbcfcae5f81fd7fb165ab660657 458 Pfam PF16527 Two-component sensor protein CpxA, periplasmic domain 82 160 4.4E-11 T 14-10-2018 IPR032404 Two-component sensor protein CpxA, periplasmic domain YP_0073 6d034cbcfcae5f81fd7fb165ab660657 458 SMART SM00304 184 237 6.1E-8 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_0073 6d034cbcfcae5f81fd7fb165ab660657 458 Gene3D G3DSA:1.10.287.130 188 302 3.0E-37 T 14-10-2018 YP_0073 6d034cbcfcae5f81fd7fb165ab660657 458 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 349 453 6.2E-19 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0073 6d034cbcfcae5f81fd7fb165ab660657 458 SMART SM00388 238 300 1.7E-14 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0073 6d034cbcfcae5f81fd7fb165ab660657 458 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 298 1.3E-13 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0073 6d034cbcfcae5f81fd7fb165ab660657 458 Pfam PF00672 HAMP domain 184 233 1.2E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_0073 6d034cbcfcae5f81fd7fb165ab660657 458 SUPERFAMILY SSF47384 224 299 2.16E-15 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_0073 6d034cbcfcae5f81fd7fb165ab660657 458 Gene3D G3DSA:3.30.450.210 27 147 5.1E-11 T 14-10-2018 IPR038515 CpxA, periplasmic domain superfamily YP_0073 6d034cbcfcae5f81fd7fb165ab660657 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 1.8E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0073 6d034cbcfcae5f81fd7fb165ab660657 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 394 1.8E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0073 6d034cbcfcae5f81fd7fb165ab660657 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 408 1.8E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0073 6d034cbcfcae5f81fd7fb165ab660657 458 SUPERFAMILY SSF55874 289 455 3.93E-39 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0073 6d034cbcfcae5f81fd7fb165ab660657 458 Gene3D G3DSA:3.30.565.10 304 454 2.6E-40 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0073 6d034cbcfcae5f81fd7fb165ab660657 458 SMART SM00387 345 455 1.6E-30 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 Pfam PF10509 Galactokinase galactose-binding signature 11 57 6.5E-22 T 14-10-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 Pfam PF00288 GHMP kinases N terminal domain 115 181 1.8E-14 T 14-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 SUPERFAMILY SSF54211 3 203 4.63E-64 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 SUPERFAMILY SSF55060 205 381 1.15E-52 T 14-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 Hamap MF_00246 Galactokinase [galK]. 25 382 42.547 T 14-10-2018 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 Pfam PF08544 GHMP kinases C terminal 279 361 5.8E-10 T 14-10-2018 IPR013750 GHMP kinase, C-terminal domain YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 Gene3D G3DSA:3.30.230.10 23 201 1.2E-127 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 PRINTS PR00959 Mevalonate kinase family signature 119 141 3.8E-46 T 14-10-2018 YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 PRINTS PR00959 Mevalonate kinase family signature 162 181 3.8E-46 T 14-10-2018 YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 PRINTS PR00959 Mevalonate kinase family signature 25 49 3.8E-46 T 14-10-2018 YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 PRINTS PR00959 Mevalonate kinase family signature 328 345 3.8E-46 T 14-10-2018 YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 TIGRFAM TIGR00131 gal_kin: galactokinase 5 383 2.6E-152 T 14-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 Gene3D G3DSA:3.30.70.890 202 357 1.2E-127 T 14-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 PIRSF PIRSF000530 1 383 4.3E-118 T 14-10-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 121 132 - T 14-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 PRINTS PR00473 Galactokinase signature 92 103 3.1E-29 T 14-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 PRINTS PR00473 Galactokinase signature 112 130 3.1E-29 T 14-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 PRINTS PR00473 Galactokinase signature 263 277 3.1E-29 T 14-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 PRINTS PR00473 Galactokinase signature 27 45 3.1E-29 T 14-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YP_1022 39bcf1e108cf7cb32785f3d2f4eb1125 383 ProSitePatterns PS00106 Galactokinase signature. 27 38 - T 14-10-2018 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YP_1096 fcac28571f59bceb9dbff9163dd502b4 292 SUPERFAMILY SSF56176 203 289 1.12E-23 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YP_1096 fcac28571f59bceb9dbff9163dd502b4 292 Pfam PF03471 Transporter associated domain 206 281 8.1E-22 T 14-10-2018 IPR005170 Transporter-associated domain YP_1096 fcac28571f59bceb9dbff9163dd502b4 292 SUPERFAMILY SSF54631 66 202 3.79E-32 T 14-10-2018 YP_1096 fcac28571f59bceb9dbff9163dd502b4 292 Gene3D G3DSA:3.10.580.10 51 197 3.4E-56 T 14-10-2018 YP_1096 fcac28571f59bceb9dbff9163dd502b4 292 Pfam PF00571 CBS domain 143 189 1.2E-4 T 14-10-2018 IPR000644 CBS domain YP_1096 fcac28571f59bceb9dbff9163dd502b4 292 Pfam PF00571 CBS domain 69 123 5.3E-8 T 14-10-2018 IPR000644 CBS domain YP_1096 fcac28571f59bceb9dbff9163dd502b4 292 SMART SM00116 78 127 3.9 T 14-10-2018 IPR000644 CBS domain YP_1096 fcac28571f59bceb9dbff9163dd502b4 292 SMART SM00116 141 189 3.9 T 14-10-2018 IPR000644 CBS domain YP_1096 fcac28571f59bceb9dbff9163dd502b4 292 Gene3D G3DSA:3.30.465.10 198 292 2.2E-34 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YP_1096 fcac28571f59bceb9dbff9163dd502b4 292 SMART SM01091 205 283 1.8E-29 T 14-10-2018 IPR005170 Transporter-associated domain YP_0006 08731e5149aa0e7698b62bab72d798fb 622 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 5 622 33.91 T 14-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup YP_0006 08731e5149aa0e7698b62bab72d798fb 622 TIGRFAM TIGR00794 kup: potassium uptake protein 97 549 5.7E-185 T 14-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 YP_0006 08731e5149aa0e7698b62bab72d798fb 622 Pfam PF02705 K+ potassium transporter 14 544 1.8E-210 T 14-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 YP_3111 4dba6a4374174241df7b79e1525c8297 95 SUPERFAMILY SSF54736 24 95 5.06E-26 T 14-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YP_3111 4dba6a4374174241df7b79e1525c8297 95 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 95 2.6E-38 T 14-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_3111 4dba6a4374174241df7b79e1525c8297 95 SUPERFAMILY SSF48300 1 31 1.31E-5 T 14-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_3111 4dba6a4374174241df7b79e1525c8297 95 Gene3D G3DSA:1.20.5.710 1 24 3.6E-6 T 14-10-2018 YP_3111 4dba6a4374174241df7b79e1525c8297 95 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 29 95 5.2E-32 T 14-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_3111 4dba6a4374174241df7b79e1525c8297 95 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 1 95 17.137 T 14-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_3111 4dba6a4374174241df7b79e1525c8297 95 Gene3D G3DSA:3.30.1390.10 25 95 1.9E-33 T 14-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YP_3111 4dba6a4374174241df7b79e1525c8297 95 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 30 95 2.0E-28 T 14-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_1454 fde287051a8394387355adb9ad41c2de 280 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 72 275 2.0E-65 T 14-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 YP_1454 fde287051a8394387355adb9ad41c2de 280 SUPERFAMILY SSF56529 62 277 2.22E-79 T 14-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YP_1454 fde287051a8394387355adb9ad41c2de 280 Gene3D G3DSA:3.90.850.10 67 280 1.4E-81 T 14-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YP_1919 b57e73dea97e6a7c2f3b8b21224ce6df 89 Gene3D G3DSA:3.30.1070.10 31 87 5.9E-28 T 14-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 YP_1919 b57e73dea97e6a7c2f3b8b21224ce6df 89 Pfam PF03776 Septum formation topological specificity factor MinE 14 82 2.9E-24 T 14-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 YP_1919 b57e73dea97e6a7c2f3b8b21224ce6df 89 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 3.0E-33 T 14-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 YP_1919 b57e73dea97e6a7c2f3b8b21224ce6df 89 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 86 18.604 T 14-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 YP_1919 b57e73dea97e6a7c2f3b8b21224ce6df 89 SUPERFAMILY SSF55229 32 85 1.44E-17 T 14-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 YP_1008 0d8b3798d9e269d2bfb36d2ed7d6437b 383 Gene3D G3DSA:3.40.640.10 57 284 1.5E-132 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_1008 0d8b3798d9e269d2bfb36d2ed7d6437b 383 Pfam PF00155 Aminotransferase class I and II 40 378 2.5E-60 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YP_1008 0d8b3798d9e269d2bfb36d2ed7d6437b 383 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 20 378 1.5E-139 T 14-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 YP_1008 0d8b3798d9e269d2bfb36d2ed7d6437b 383 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 233 242 - T 14-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 YP_1008 0d8b3798d9e269d2bfb36d2ed7d6437b 383 SUPERFAMILY SSF53383 3 378 1.61E-104 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_1008 0d8b3798d9e269d2bfb36d2ed7d6437b 383 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 3 382 48.93 T 14-10-2018 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 YP_1008 0d8b3798d9e269d2bfb36d2ed7d6437b 383 Gene3D G3DSA:3.90.1150.10 40 376 1.5E-132 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_2172 a520d20f90b788f77d3b54c991f1b1cc 192 SUPERFAMILY SSF46609 1 83 3.27E-35 T 14-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_2172 a520d20f90b788f77d3b54c991f1b1cc 192 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 82 3.4E-34 T 14-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_2172 a520d20f90b788f77d3b54c991f1b1cc 192 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 4.6E-22 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_2172 a520d20f90b788f77d3b54c991f1b1cc 192 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.6E-22 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_2172 a520d20f90b788f77d3b54c991f1b1cc 192 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 4.6E-22 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_2172 a520d20f90b788f77d3b54c991f1b1cc 192 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.6E-22 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_2172 a520d20f90b788f77d3b54c991f1b1cc 192 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 4.6E-22 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_2172 a520d20f90b788f77d3b54c991f1b1cc 192 PIRSF PIRSF000349 1 192 2.7E-86 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_2172 a520d20f90b788f77d3b54c991f1b1cc 192 Gene3D G3DSA:1.10.287.990 20 82 7.0E-26 T 14-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_2172 a520d20f90b788f77d3b54c991f1b1cc 192 Gene3D G3DSA:2.40.500.20 83 192 1.6E-44 T 14-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_2172 a520d20f90b788f77d3b54c991f1b1cc 192 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 189 1.2E-40 T 14-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_2172 a520d20f90b788f77d3b54c991f1b1cc 192 SUPERFAMILY SSF54719 82 191 1.15E-44 T 14-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_2172 a520d20f90b788f77d3b54c991f1b1cc 192 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 14-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_0807 e85b470eafdfd65054a943e5aad39b7e 658 SMART SM00382 37 178 1.8E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0807 e85b470eafdfd65054a943e5aad39b7e 658 Pfam PF12168 DNA polymerase III subunits tau domain IV DnaB-binding 432 512 9.5E-22 T 14-10-2018 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_0807 e85b470eafdfd65054a943e5aad39b7e 658 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 514 655 1.5E-60 T 14-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_0807 e85b470eafdfd65054a943e5aad39b7e 658 Pfam PF13177 DNA polymerase III, delta subunit 20 178 1.6E-42 T 14-10-2018 YP_0807 e85b470eafdfd65054a943e5aad39b7e 658 Gene3D G3DSA:1.10.8.60 8 240 1.1E-103 T 14-10-2018 YP_0807 e85b470eafdfd65054a943e5aad39b7e 658 Gene3D G3DSA:3.30.300.150 512 640 1.0E-46 T 14-10-2018 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_0807 e85b470eafdfd65054a943e5aad39b7e 658 Gene3D G3DSA:1.20.272.10 242 363 5.9E-44 T 14-10-2018 YP_0807 e85b470eafdfd65054a943e5aad39b7e 658 SUPERFAMILY SSF48019 243 367 1.87E-35 T 14-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 YP_0807 e85b470eafdfd65054a943e5aad39b7e 658 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 356 3.0E-134 T 14-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 YP_0807 e85b470eafdfd65054a943e5aad39b7e 658 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 1.9E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0807 e85b470eafdfd65054a943e5aad39b7e 658 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 1.9E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0807 e85b470eafdfd65054a943e5aad39b7e 658 SUPERFAMILY SSF52540 35 222 1.98E-55 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0807 e85b470eafdfd65054a943e5aad39b7e 658 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 363 2.5E-32 T 14-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 YP_0807 e85b470eafdfd65054a943e5aad39b7e 658 Gene3D G3DSA:3.40.50.300 13 177 1.1E-103 T 14-10-2018 YP_0465 be2c70c7cbb223cc39cdb886057329f1 1269 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 822 1269 2.9E-78 T 14-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YP_0465 be2c70c7cbb223cc39cdb886057329f1 1269 SUPERFAMILY SSF103515 952 1269 1.57E-38 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_0465 be2c70c7cbb223cc39cdb886057329f1 1269 Gene3D G3DSA:2.40.128.130 944 1269 2.7E-62 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_0465 be2c70c7cbb223cc39cdb886057329f1 1269 Gene3D G3DSA:2.160.20.20 751 937 9.1E-37 T 14-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YP_0465 be2c70c7cbb223cc39cdb886057329f1 1269 SUPERFAMILY SSF51126 408 935 2.26E-31 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor YP_0465 be2c70c7cbb223cc39cdb886057329f1 1269 Pfam PF03797 Autotransporter beta-domain 993 1245 1.2E-33 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_0465 be2c70c7cbb223cc39cdb886057329f1 1269 SMART SM00869 990 1254 9.4E-35 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_2131 6978d5c20c3bce5f04b2ccce9f5ec5b0 525 SUPERFAMILY SSF55785 81 170 4.76E-8 T 14-10-2018 IPR035965 PAS domain superfamily YP_2131 6978d5c20c3bce5f04b2ccce9f5ec5b0 525 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 466 513 8.0E-28 T 14-10-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 YP_2131 6978d5c20c3bce5f04b2ccce9f5ec5b0 525 Gene3D G3DSA:1.10.8.60 378 455 2.4E-19 T 14-10-2018 YP_2131 6978d5c20c3bce5f04b2ccce9f5ec5b0 525 Pfam PF00158 Sigma-54 interaction domain 206 372 1.0E-60 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 YP_2131 6978d5c20c3bce5f04b2ccce9f5ec5b0 525 SMART SM00382 226 370 4.2E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2131 6978d5c20c3bce5f04b2ccce9f5ec5b0 525 Pfam PF00989 PAS fold 82 124 4.6E-5 T 14-10-2018 IPR013767 PAS fold GO:0006355 YP_2131 6978d5c20c3bce5f04b2ccce9f5ec5b0 525 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 419 428 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site YP_2131 6978d5c20c3bce5f04b2ccce9f5ec5b0 525 SUPERFAMILY SSF46689 459 513 1.43E-9 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2131 6978d5c20c3bce5f04b2ccce9f5ec5b0 525 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 230 243 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YP_2131 6978d5c20c3bce5f04b2ccce9f5ec5b0 525 SUPERFAMILY SSF52540 206 447 1.39E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2131 6978d5c20c3bce5f04b2ccce9f5ec5b0 525 Gene3D G3DSA:3.40.50.300 193 377 8.1E-60 T 14-10-2018 YP_2131 6978d5c20c3bce5f04b2ccce9f5ec5b0 525 Gene3D G3DSA:1.10.10.60 457 514 1.1E-26 T 14-10-2018 YP_2131 6978d5c20c3bce5f04b2ccce9f5ec5b0 525 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 292 307 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YP_2131 6978d5c20c3bce5f04b2ccce9f5ec5b0 525 Gene3D G3DSA:3.30.70.260 1 81 1.4E-25 T 14-10-2018 YP_2131 6978d5c20c3bce5f04b2ccce9f5ec5b0 525 Gene3D G3DSA:3.30.450.20 82 190 3.6E-28 T 14-10-2018 YP_2131 6978d5c20c3bce5f04b2ccce9f5ec5b0 525 SMART SM00091 80 146 7.9E-6 T 14-10-2018 IPR000014 PAS domain YP_4037 30cb97928325e96cb87ecf89b3d8fd52 656 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 300 314 - T 14-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 YP_4037 30cb97928325e96cb87ecf89b3d8fd52 656 Pfam PF13932 GidA associated domain 430 643 1.2E-75 T 14-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 YP_4037 30cb97928325e96cb87ecf89b3d8fd52 656 Gene3D G3DSA:1.10.10.1800 486 577 3.5E-30 T 14-10-2018 YP_4037 30cb97928325e96cb87ecf89b3d8fd52 656 Pfam PF01134 Glucose inhibited division protein A 35 425 1.7E-168 T 14-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 YP_4037 30cb97928325e96cb87ecf89b3d8fd52 656 Gene3D G3DSA:3.50.50.60 27 272 7.0E-91 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_4037 30cb97928325e96cb87ecf89b3d8fd52 656 Gene3D G3DSA:3.50.50.60 321 485 1.2E-55 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_4037 30cb97928325e96cb87ecf89b3d8fd52 656 SMART SM01228 573 644 2.8E-44 T 14-10-2018 YP_4037 30cb97928325e96cb87ecf89b3d8fd52 656 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 34 649 5.6E-294 T 14-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 YP_4037 30cb97928325e96cb87ecf89b3d8fd52 656 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 32 651 42.617 T 14-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 YP_4037 30cb97928325e96cb87ecf89b3d8fd52 656 Gene3D G3DSA:1.10.150.570 597 649 5.7E-23 T 14-10-2018 YP_4037 30cb97928325e96cb87ecf89b3d8fd52 656 SUPERFAMILY SSF51905 33 288 6.79E-50 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_4037 30cb97928325e96cb87ecf89b3d8fd52 656 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 395 418 - T 14-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 YP_1478 cb864c2b6602eb2de252a32cbe2fe3e4 128 SUPERFAMILY SSF46689 11 58 2.42E-7 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_1478 cb864c2b6602eb2de252a32cbe2fe3e4 128 Gene3D G3DSA:1.10.10.60 8 58 1.7E-18 T 14-10-2018 YP_1478 cb864c2b6602eb2de252a32cbe2fe3e4 128 SUPERFAMILY SSF46689 60 110 2.91E-14 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_1478 cb864c2b6602eb2de252a32cbe2fe3e4 128 Pfam PF12833 Helix-turn-helix domain 30 108 2.1E-23 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_1478 cb864c2b6602eb2de252a32cbe2fe3e4 128 SMART SM00342 24 107 2.4E-26 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_1478 cb864c2b6602eb2de252a32cbe2fe3e4 128 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 91 107 1.0E-7 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_1478 cb864c2b6602eb2de252a32cbe2fe3e4 128 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 76 91 1.0E-7 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_1478 cb864c2b6602eb2de252a32cbe2fe3e4 128 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 61 103 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YP_1478 cb864c2b6602eb2de252a32cbe2fe3e4 128 Gene3D G3DSA:1.10.10.60 59 119 7.5E-17 T 14-10-2018 YP_1627 5bb6dcda499ffac1ad1a94dc1926107f 267 SUPERFAMILY SSF56529 4 267 3.14E-75 T 14-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YP_1627 5bb6dcda499ffac1ad1a94dc1926107f 267 Gene3D G3DSA:3.90.850.10 1 267 6.8E-79 T 14-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YP_1627 5bb6dcda499ffac1ad1a94dc1926107f 267 TIGRFAM TIGR02312 HpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1 267 9.9E-134 T 14-10-2018 IPR012690 2-oxo-hepta-4-ene-1,7-dioic acid hydratase GO:0018817|GO:0019439 YP_3968 f9e7dbbc3ecb1d9de81d4a0af8218541 224 SUPERFAMILY SSF81342 4 206 3.14E-55 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 YP_3968 f9e7dbbc3ecb1d9de81d4a0af8218541 224 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 7 204 4.6E-66 T 14-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 YP_3968 f9e7dbbc3ecb1d9de81d4a0af8218541 224 Gene3D G3DSA:1.20.950.20 1 214 1.7E-73 T 14-10-2018 YP_3968 f9e7dbbc3ecb1d9de81d4a0af8218541 224 Pfam PF01292 Prokaryotic cytochrome b561 9 184 3.2E-23 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 YP_1437 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PRINTS PR00083 Histidinol dehydrogenase signature 323 348 4.5E-99 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YP_1437 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PRINTS PR00083 Histidinol dehydrogenase signature 364 382 4.5E-99 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YP_1437 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PRINTS PR00083 Histidinol dehydrogenase signature 140 166 4.5E-99 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YP_1437 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PRINTS PR00083 Histidinol dehydrogenase signature 233 254 4.5E-99 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YP_1437 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PRINTS PR00083 Histidinol dehydrogenase signature 171 197 4.5E-99 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YP_1437 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PRINTS PR00083 Histidinol dehydrogenase signature 255 274 4.5E-99 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YP_1437 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PRINTS PR00083 Histidinol dehydrogenase signature 201 226 4.5E-99 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YP_1437 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PRINTS PR00083 Histidinol dehydrogenase signature 39 63 4.5E-99 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YP_1437 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 SUPERFAMILY SSF53720 10 434 1.31E-86 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YP_1437 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 Pfam PF00815 Histidinol dehydrogenase 31 430 3.5E-165 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YP_1437 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 10 430 40.978 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YP_1437 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 Gene3D G3DSA:3.40.50.1980 36 235 2.1E-122 T 14-10-2018 YP_1437 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 233 265 - T 14-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 YP_1437 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PIRSF PIRSF000099 3 433 3.4E-167 T 14-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YP_1437 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 Gene3D G3DSA:3.40.50.1980 237 352 2.1E-122 T 14-10-2018 YP_1437 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 39 429 2.9E-159 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YP_3969 4bd4d7dd9822d8c2cd7d624ebc957273 323 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 7 291 3.7E-142 T 14-10-2018 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 YP_3969 4bd4d7dd9822d8c2cd7d624ebc957273 323 Gene3D G3DSA:3.30.70.20 28 229 4.0E-102 T 14-10-2018 YP_3969 4bd4d7dd9822d8c2cd7d624ebc957273 323 SUPERFAMILY SSF54862 29 275 9.63E-70 T 14-10-2018 YP_3969 4bd4d7dd9822d8c2cd7d624ebc957273 323 Pfam PF09163 Formate dehydrogenase N, transmembrane 248 291 4.1E-23 T 14-10-2018 IPR015246 Formate dehydrogenase, transmembrane YP_3969 4bd4d7dd9822d8c2cd7d624ebc957273 323 PIRSF PIRSF036298 1 320 4.6E-168 T 14-10-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 YP_3969 4bd4d7dd9822d8c2cd7d624ebc957273 323 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 135 146 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_3969 4bd4d7dd9822d8c2cd7d624ebc957273 323 Pfam PF13247 4Fe-4S dicluster domain 94 190 8.8E-25 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_3969 4bd4d7dd9822d8c2cd7d624ebc957273 323 Gene3D G3DSA:3.30.70.20 18 164 4.0E-102 T 14-10-2018 YP_3969 4bd4d7dd9822d8c2cd7d624ebc957273 323 Gene3D G3DSA:1.20.5.480 249 296 1.4E-26 T 14-10-2018 IPR038384 Formate dehydrogenase, C-terminal domain superfamily YP_1465 dc3b118ee56d9268ac51c5d7a3700a3f 430 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 422 3.3E-131 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 YP_1465 dc3b118ee56d9268ac51c5d7a3700a3f 430 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 417 3.2E-113 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit YP_1465 dc3b118ee56d9268ac51c5d7a3700a3f 430 PIRSF PIRSF006066 1 428 6.3E-176 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 YP_2641 c8c6caae04fc40ae432b99daaaa658ac 292 SUPERFAMILY SSF46689 12 87 1.25E-18 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2641 c8c6caae04fc40ae432b99daaaa658ac 292 SUPERFAMILY SSF53697 105 289 3.4E-43 T 14-10-2018 YP_2641 c8c6caae04fc40ae432b99daaaa658ac 292 Gene3D G3DSA:1.10.10.10 9 89 1.9E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2641 c8c6caae04fc40ae432b99daaaa658ac 292 Pfam PF01418 Helix-turn-helix domain, rpiR family 13 86 9.4E-23 T 14-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 YP_2641 c8c6caae04fc40ae432b99daaaa658ac 292 Pfam PF01380 SIS domain 139 265 3.7E-19 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YP_2641 c8c6caae04fc40ae432b99daaaa658ac 292 Gene3D G3DSA:3.40.50.10490 108 290 6.7E-47 T 14-10-2018 YP_3877 37a7c4ae82595842376d59ffc0d4ec24 489 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 426 1.9E-174 T 14-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 YP_3877 37a7c4ae82595842376d59ffc0d4ec24 489 Pfam PF00575 S1 RNA binding domain 38 109 3.2E-6 T 14-10-2018 IPR003029 S1 domain GO:0003676 YP_3877 37a7c4ae82595842376d59ffc0d4ec24 489 SMART SM00316 37 122 2.1E-9 T 14-10-2018 IPR022967 RNA-binding domain, S1 YP_3877 37a7c4ae82595842376d59ffc0d4ec24 489 Gene3D G3DSA:2.40.50.140 31 127 4.1E-31 T 14-10-2018 YP_3877 37a7c4ae82595842376d59ffc0d4ec24 489 Pfam PF10150 Ribonuclease E/G family 124 393 4.0E-101 T 14-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 YP_3877 37a7c4ae82595842376d59ffc0d4ec24 489 Gene3D G3DSA:3.40.1260.20 402 488 3.9E-6 T 14-10-2018 YP_3877 37a7c4ae82595842376d59ffc0d4ec24 489 SUPERFAMILY SSF50249 39 128 6.0E-19 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_3091 ec49b7998209207610e8ecc092760fd3 544 SMART SM00851 34 147 7.0E-62 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain YP_3091 ec49b7998209207610e8ecc092760fd3 544 SUPERFAMILY SSF52335 22 211 1.57E-71 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily YP_3091 ec49b7998209207610e8ecc092760fd3 544 PIRSF PIRSF000414 16 544 8.0E-227 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YP_3091 ec49b7998209207610e8ecc092760fd3 544 Pfam PF01808 AICARFT/IMPCHase bienzyme 152 475 4.5E-120 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YP_3091 ec49b7998209207610e8ecc092760fd3 544 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 23 544 1.6E-262 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YP_3091 ec49b7998209207610e8ecc092760fd3 544 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 22 544 45.674 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YP_3091 ec49b7998209207610e8ecc092760fd3 544 Gene3D G3DSA:3.40.140.20 233 389 2.1E-58 T 14-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YP_3091 ec49b7998209207610e8ecc092760fd3 544 Gene3D G3DSA:3.40.50.1380 14 215 2.9E-86 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily YP_3091 ec49b7998209207610e8ecc092760fd3 544 Gene3D G3DSA:3.40.140.20 407 544 2.6E-57 T 14-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YP_3091 ec49b7998209207610e8ecc092760fd3 544 SMART SM00798 152 476 2.3E-218 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YP_3091 ec49b7998209207610e8ecc092760fd3 544 SUPERFAMILY SSF53927 236 544 2.61E-129 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 YP_3091 ec49b7998209207610e8ecc092760fd3 544 Pfam PF02142 MGS-like domain 34 147 3.1E-29 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain YP_2482 4a69e4dbf4df20c501ae363367f193bd 115 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 20 112 4.9E-33 T 14-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 YP_2482 4a69e4dbf4df20c501ae363367f193bd 115 Gene3D G3DSA:1.20.58.280 14 115 3.0E-36 T 14-10-2018 YP_2482 4a69e4dbf4df20c501ae363367f193bd 115 PIRSF PIRSF000699 10 115 5.6E-38 T 14-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 YP_2482 4a69e4dbf4df20c501ae363367f193bd 115 SUPERFAMILY SSF46973 16 113 1.44E-33 T 14-10-2018 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily GO:0009401 YP_2134 ebae9848eb5e44f37b4babba29f71369 353 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 57 342 9.5E-134 T 14-10-2018 IPR006507 Uncharacterised protein family UPF0283 YP_2134 ebae9848eb5e44f37b4babba29f71369 353 Hamap MF_01085 UPF0283 membrane protein YcjF [ycjF]. 4 348 39.45 T 14-10-2018 IPR006507 Uncharacterised protein family UPF0283 YP_2134 ebae9848eb5e44f37b4babba29f71369 353 Pfam PF05128 Domain of unknown function (DUF697) 183 342 3.5E-57 T 14-10-2018 IPR021147 Protein of unknown function DUF697 YP_3299 6da8892072a8c5660d90393724c2538a 532 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 380 390 - T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_3299 6da8892072a8c5660d90393724c2538a 532 Gene3D G3DSA:3.50.50.60 33 394 3.1E-145 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3299 6da8892072a8c5660d90393724c2538a 532 Gene3D G3DSA:1.10.8.870 419 488 3.2E-27 T 14-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_3299 6da8892072a8c5660d90393724c2538a 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 341 347 6.4E-28 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_3299 6da8892072a8c5660d90393724c2538a 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 106 118 6.4E-28 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_3299 6da8892072a8c5660d90393724c2538a 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 45 55 6.4E-28 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_3299 6da8892072a8c5660d90393724c2538a 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 375 387 6.4E-28 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_3299 6da8892072a8c5660d90393724c2538a 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 61 73 6.4E-28 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_3299 6da8892072a8c5660d90393724c2538a 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 32 44 6.4E-28 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_3299 6da8892072a8c5660d90393724c2538a 532 Gene3D G3DSA:3.30.9.10 110 348 3.1E-145 T 14-10-2018 YP_3299 6da8892072a8c5660d90393724c2538a 532 Pfam PF01266 FAD dependent oxidoreductase 33 351 9.8E-49 T 14-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 YP_3299 6da8892072a8c5660d90393724c2538a 532 SUPERFAMILY SSF54373 254 347 2.35E-7 T 14-10-2018 YP_3299 6da8892072a8c5660d90393724c2538a 532 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 37 54 - T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_3299 6da8892072a8c5660d90393724c2538a 532 SUPERFAMILY SSF51905 29 402 4.61E-36 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3299 6da8892072a8c5660d90393724c2538a 532 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 409 520 2.3E-12 T 14-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_1217 4e3d7b8046e20772b54e219a267f7460 1305 Gene3D G3DSA:3.30.980.40 815 919 4.7E-34 T 14-10-2018 YP_1217 4e3d7b8046e20772b54e219a267f7460 1305 Pfam PF09397 Ftsk gamma domain 1240 1300 1.0E-26 T 14-10-2018 IPR018541 FtsK gamma domain YP_1217 4e3d7b8046e20772b54e219a267f7460 1305 Gene3D G3DSA:3.40.50.300 920 1222 1.6E-123 T 14-10-2018 YP_1217 4e3d7b8046e20772b54e219a267f7460 1305 Gene3D G3DSA:1.10.10.10 1242 1305 3.9E-29 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1217 4e3d7b8046e20772b54e219a267f7460 1305 SUPERFAMILY SSF52540 897 1209 7.3E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1217 4e3d7b8046e20772b54e219a267f7460 1305 SMART SM00843 1238 1303 1.1E-40 T 14-10-2018 IPR018541 FtsK gamma domain YP_1217 4e3d7b8046e20772b54e219a267f7460 1305 SUPERFAMILY SSF46785 1238 1303 2.18E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1217 4e3d7b8046e20772b54e219a267f7460 1305 Pfam PF01580 FtsK/SpoIIIE family 923 1136 4.5E-72 T 14-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 YP_1217 4e3d7b8046e20772b54e219a267f7460 1305 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 20 191 7.6E-44 T 14-10-2018 IPR025199 DNA translocase FtsK, 4TM region YP_3352 a39ee53b2b61525c0f1945b0433d2271 111 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 46 109 2.0E-29 T 14-10-2018 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 YP_3352 a39ee53b2b61525c0f1945b0433d2271 111 SUPERFAMILY SSF55331 47 109 1.83E-22 T 14-10-2018 IPR014347 Tautomerase/MIF superfamily YP_3352 a39ee53b2b61525c0f1945b0433d2271 111 Pfam PF01361 Tautomerase enzyme 47 106 1.2E-23 T 14-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 YP_3352 a39ee53b2b61525c0f1945b0433d2271 111 Gene3D G3DSA:3.30.429.10 47 110 3.5E-26 T 14-10-2018 IPR014347 Tautomerase/MIF superfamily YP_0538 d4f34ea33ec5342b6092f0a022f2a3a9 557 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 195 293 9.4E-13 T 14-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 YP_0538 d4f34ea33ec5342b6092f0a022f2a3a9 557 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 197 209 - T 14-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 YP_0538 d4f34ea33ec5342b6092f0a022f2a3a9 557 Gene3D G3DSA:2.40.110.20 144 303 1.4E-54 T 14-10-2018 YP_0538 d4f34ea33ec5342b6092f0a022f2a3a9 557 SUPERFAMILY SSF56645 75 301 6.48E-29 T 14-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 YP_0538 d4f34ea33ec5342b6092f0a022f2a3a9 557 Gene3D G3DSA:1.20.140.10 304 482 1.5E-36 T 14-10-2018 YP_0538 d4f34ea33ec5342b6092f0a022f2a3a9 557 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 303 456 5.5E-29 T 14-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 YP_0538 d4f34ea33ec5342b6092f0a022f2a3a9 557 SUPERFAMILY SSF47203 301 461 7.25E-39 T 14-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 YP_2088 3cf4c689a7155d0a46bf7e4c683db18b 508 SUPERFAMILY SSF52283 1 168 1.11E-58 T 14-10-2018 YP_2088 3cf4c689a7155d0a46bf7e4c683db18b 508 Gene3D G3DSA:3.40.50.720 3 365 1.5E-164 T 14-10-2018 YP_2088 3cf4c689a7155d0a46bf7e4c683db18b 508 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 2 508 1.1E-292 T 14-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 YP_2088 3cf4c689a7155d0a46bf7e4c683db18b 508 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 1.1E-52 T 14-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal YP_2088 3cf4c689a7155d0a46bf7e4c683db18b 508 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 368 1.0E-75 T 14-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain YP_2088 3cf4c689a7155d0a46bf7e4c683db18b 508 SMART SM01003 4 137 5.7E-77 T 14-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal YP_2088 3cf4c689a7155d0a46bf7e4c683db18b 508 SUPERFAMILY SSF51735 137 317 3.01E-37 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2088 3cf4c689a7155d0a46bf7e4c683db18b 508 PIRSF PIRSF000203 1 507 6.9E-280 T 14-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 YP_2088 3cf4c689a7155d0a46bf7e4c683db18b 508 Gene3D G3DSA:3.40.50.720 137 318 1.5E-164 T 14-10-2018 YP_2088 3cf4c689a7155d0a46bf7e4c683db18b 508 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 425 507 1.0E-35 T 14-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 YP_2088 3cf4c689a7155d0a46bf7e4c683db18b 508 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 170 195 - T 14-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 YP_2088 3cf4c689a7155d0a46bf7e4c683db18b 508 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 14-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 YP_2088 3cf4c689a7155d0a46bf7e4c683db18b 508 SMART SM01002 146 311 8.5E-86 T 14-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain YP_1041 302da6befff8057832dbd8bbbcc08d3a 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 43.368 T 14-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YP_1041 302da6befff8057832dbd8bbbcc08d3a 388 Pfam PF00549 CoA-ligase 262 382 4.4E-24 T 14-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YP_1041 302da6befff8057832dbd8bbbcc08d3a 388 Gene3D G3DSA:3.30.470.20 1 234 2.9E-97 T 14-10-2018 YP_1041 302da6befff8057832dbd8bbbcc08d3a 388 PIRSF PIRSF001554 1 388 1.9E-154 T 14-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YP_1041 302da6befff8057832dbd8bbbcc08d3a 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 14-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YP_1041 302da6befff8057832dbd8bbbcc08d3a 388 Gene3D G3DSA:3.30.1490.20 21 104 2.9E-97 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YP_1041 302da6befff8057832dbd8bbbcc08d3a 388 Pfam PF08442 ATP-grasp domain 2 203 2.9E-83 T 14-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YP_1041 302da6befff8057832dbd8bbbcc08d3a 388 SUPERFAMILY SSF56059 1 238 2.65E-81 T 14-10-2018 YP_1041 302da6befff8057832dbd8bbbcc08d3a 388 Gene3D G3DSA:3.40.50.261 240 387 2.3E-55 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YP_1041 302da6befff8057832dbd8bbbcc08d3a 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 384 8.6E-182 T 14-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YP_1041 302da6befff8057832dbd8bbbcc08d3a 388 SUPERFAMILY SSF52210 240 385 1.96E-52 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YP_2694 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2694 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2694 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2694 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3641 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3641 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3641 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3641 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2735 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2735 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2735 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2735 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2682 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2682 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2682 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2682 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2815 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2815 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2815 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2815 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3700 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3700 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3700 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3700 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0269 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0269 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0269 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0269 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0744 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0744 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0744 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0744 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3193 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3193 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3193 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3193 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2245 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2245 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2245 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2245 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3822 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3822 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3822 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3822 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2130 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2130 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2130 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2130 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2903 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2903 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2903 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2903 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3648 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3648 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3648 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3648 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0203 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0203 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0203 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0203 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3239 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3239 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3239 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3239 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0853 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0853 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0853 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0853 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_1325 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_1325 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_1325 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_1325 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0995 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0995 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0995 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0995 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0878 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0878 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0878 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0878 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2527 905bf96b6b17acf31b95af7cced1ceaa 169 SUPERFAMILY SSF143422 18 146 1.44E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2527 905bf96b6b17acf31b95af7cced1ceaa 169 Gene3D G3DSA:3.30.70.1290 20 153 1.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2527 905bf96b6b17acf31b95af7cced1ceaa 169 Pfam PF01797 Transposase IS200 like 29 146 5.6E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2527 905bf96b6b17acf31b95af7cced1ceaa 169 SMART SM01321 28 146 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_pMT033 89c5826049f590890bc554fc8cd60af6 519 SMART SM00487 93 289 7.7E-18 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_pMT033 89c5826049f590890bc554fc8cd60af6 519 SUPERFAMILY SSF52540 136 479 4.3E-30 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pMT033 89c5826049f590890bc554fc8cd60af6 519 SMART SM00490 382 463 3.0E-13 T 14-10-2018 IPR001650 Helicase, C-terminal YP_pMT033 89c5826049f590890bc554fc8cd60af6 519 Pfam PF00271 Helicase conserved C-terminal domain 375 462 3.5E-10 T 14-10-2018 IPR001650 Helicase, C-terminal YP_pMT033 89c5826049f590890bc554fc8cd60af6 519 Gene3D G3DSA:3.40.50.300 96 294 2.0E-23 T 14-10-2018 YP_pMT033 89c5826049f590890bc554fc8cd60af6 519 Pfam PF00270 DEAD/DEAH box helicase 99 271 3.1E-13 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YP_pMT033 89c5826049f590890bc554fc8cd60af6 519 Gene3D G3DSA:3.40.50.300 326 501 1.0E-28 T 14-10-2018 YP_0399 b23b755abe3e064bdacd2ef2e0ec29ac 373 Pfam PF02153 Prephenate dehydrogenase 138 344 3.3E-31 T 14-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 YP_0399 b23b755abe3e064bdacd2ef2e0ec29ac 373 Gene3D G3DSA:1.20.59.10 1 80 2.4E-16 T 14-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YP_0399 b23b755abe3e064bdacd2ef2e0ec29ac 373 SUPERFAMILY SSF48179 241 366 8.73E-42 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_0399 b23b755abe3e064bdacd2ef2e0ec29ac 373 Gene3D G3DSA:3.40.50.720 81 246 5.1E-44 T 14-10-2018 YP_0399 b23b755abe3e064bdacd2ef2e0ec29ac 373 Gene3D G3DSA:1.10.3660.10 248 373 1.9E-51 T 14-10-2018 YP_0399 b23b755abe3e064bdacd2ef2e0ec29ac 373 PIRSF PIRSF001499 1 373 7.6E-183 T 14-10-2018 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein GO:0004106|GO:0005737|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 YP_0399 b23b755abe3e064bdacd2ef2e0ec29ac 373 SUPERFAMILY SSF48600 4 88 4.4E-23 T 14-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YP_0399 b23b755abe3e064bdacd2ef2e0ec29ac 373 Pfam PF01817 Chorismate mutase type II 9 86 3.1E-20 T 14-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YP_0399 b23b755abe3e064bdacd2ef2e0ec29ac 373 SMART SM00830 9 89 1.1E-29 T 14-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YP_0399 b23b755abe3e064bdacd2ef2e0ec29ac 373 TIGRFAM TIGR01799 CM_T: chorismate mutase 5 87 5.3E-44 T 14-10-2018 IPR011277 Chorismate mutase, T-protein GO:0004106|GO:0005737|GO:0006571|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 YP_0399 b23b755abe3e064bdacd2ef2e0ec29ac 373 SUPERFAMILY SSF51735 91 238 1.3E-38 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2797 3ddaaf71fbcafb030f7aed0202853423 196 PIRSF PIRSF002094 30 196 6.4E-63 T 14-10-2018 IPR005632 Chaperone protein Skp GO:0051082 YP_2797 3ddaaf71fbcafb030f7aed0202853423 196 Pfam PF03938 Outer membrane protein (OmpH-like) 41 194 2.1E-37 T 14-10-2018 IPR005632 Chaperone protein Skp GO:0051082 YP_2797 3ddaaf71fbcafb030f7aed0202853423 196 SUPERFAMILY SSF111384 53 195 4.05E-39 T 14-10-2018 YP_2797 3ddaaf71fbcafb030f7aed0202853423 196 SMART SM00935 43 196 7.4E-57 T 14-10-2018 IPR005632 Chaperone protein Skp GO:0051082 YP_2797 3ddaaf71fbcafb030f7aed0202853423 196 Gene3D G3DSA:3.30.910.20 52 196 2.9E-49 T 14-10-2018 IPR024930 Skp domain superfamily YP_0584 4e9233c3ab1cc6066fe66ea1f11db51f 111 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 2.7E-41 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 YP_0584 4e9233c3ab1cc6066fe66ea1f11db51f 111 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 2.7E-41 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 YP_0584 4e9233c3ab1cc6066fe66ea1f11db51f 111 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 2.7E-41 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 YP_0584 4e9233c3ab1cc6066fe66ea1f11db51f 111 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 2.7E-41 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 YP_0584 4e9233c3ab1cc6066fe66ea1f11db51f 111 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 73 4.5E-26 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 YP_0584 4e9233c3ab1cc6066fe66ea1f11db51f 111 Pfam PF03840 Preprotein translocase SecG subunit 5 72 9.2E-22 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 YP_3210 62f48ac284b300256b3c086a2aed2cb8 280 Gene3D G3DSA:3.20.20.70 1 256 1.3E-121 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3210 62f48ac284b300256b3c086a2aed2cb8 280 Pfam PF09370 Phosphoenolpyruvate hydrolase-like 13 278 3.1E-133 T 14-10-2018 IPR009215 TIM-barrel domain, IGPS-like YP_3210 62f48ac284b300256b3c086a2aed2cb8 280 PIRSF PIRSF034452 5 280 1.2E-166 T 14-10-2018 IPR009215 TIM-barrel domain, IGPS-like YP_3210 62f48ac284b300256b3c086a2aed2cb8 280 SUPERFAMILY SSF51621 7 201 3.77E-85 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YP_0129 ad401ba1a963b57f1984f4d6a7a1da9a 233 SUPERFAMILY SSF53271 46 231 1.31E-33 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like YP_0129 ad401ba1a963b57f1984f4d6a7a1da9a 233 Gene3D G3DSA:3.40.50.2020 110 232 8.4E-17 T 14-10-2018 YP_0129 ad401ba1a963b57f1984f4d6a7a1da9a 233 Pfam PF00156 Phosphoribosyl transferase domain 143 229 3.1E-7 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 YP_1475 c6dde945b558b9266250d8f3d00dfe62 572 Gene3D G3DSA:3.40.50.300 329 571 6.2E-91 T 14-10-2018 YP_1475 c6dde945b558b9266250d8f3d00dfe62 572 Pfam PF00005 ABC transporter 350 498 3.2E-34 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1475 c6dde945b558b9266250d8f3d00dfe62 572 Pfam PF00664 ABC transporter transmembrane region 17 287 5.0E-52 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YP_1475 c6dde945b558b9266250d8f3d00dfe62 572 Gene3D G3DSA:1.20.1560.10 1 315 1.0E-75 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_1475 c6dde945b558b9266250d8f3d00dfe62 572 SMART SM00382 358 544 2.3E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1475 c6dde945b558b9266250d8f3d00dfe62 572 ProSitePatterns PS00211 ABC transporters family signature. 470 484 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1475 c6dde945b558b9266250d8f3d00dfe62 572 SUPERFAMILY SSF52540 322 569 5.21E-91 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1475 c6dde945b558b9266250d8f3d00dfe62 572 SUPERFAMILY SSF90123 3 321 1.83E-75 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_3672 48a9bfa6d86b7d38bc4923d1c5bdfcee 782 Gene3D G3DSA:2.30.110.50 13 328 1.3E-89 T 14-10-2018 YP_3672 48a9bfa6d86b7d38bc4923d1c5bdfcee 782 Pfam PF05954 Phage late control gene D protein (GPD) 25 327 3.5E-71 T 14-10-2018 YP_3672 48a9bfa6d86b7d38bc4923d1c5bdfcee 782 Gene3D G3DSA:3.30.1920.30 221 284 1.3E-89 T 14-10-2018 YP_3672 48a9bfa6d86b7d38bc4923d1c5bdfcee 782 Gene3D G3DSA:2.40.50.230 351 453 2.6E-40 T 14-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YP_3672 48a9bfa6d86b7d38bc4923d1c5bdfcee 782 SUPERFAMILY SSF69349 438 753 6.51E-10 T 14-10-2018 YP_3672 48a9bfa6d86b7d38bc4923d1c5bdfcee 782 SUPERFAMILY SSF69255 361 447 1.12E-29 T 14-10-2018 YP_3672 48a9bfa6d86b7d38bc4923d1c5bdfcee 782 Gene3D G3DSA:3.55.50.10 94 185 1.3E-89 T 14-10-2018 YP_3672 48a9bfa6d86b7d38bc4923d1c5bdfcee 782 SUPERFAMILY SSF69279 190 360 1.7E-35 T 14-10-2018 YP_3672 48a9bfa6d86b7d38bc4923d1c5bdfcee 782 SUPERFAMILY SSF69279 14 180 4.12E-46 T 14-10-2018 YP_3672 48a9bfa6d86b7d38bc4923d1c5bdfcee 782 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 18 519 1.9E-154 T 14-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YP_3672 48a9bfa6d86b7d38bc4923d1c5bdfcee 782 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 17 502 3.7E-215 T 14-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 Pfam PF00391 PEP-utilising enzyme, mobile domain 152 222 1.2E-22 T 14-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 SUPERFAMILY SSF51621 249 549 1.94E-110 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 Pfam PF05524 PEP-utilising enzyme, N-terminal 4 126 4.4E-31 T 14-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 Gene3D G3DSA:3.50.30.10 4 233 1.1E-82 T 14-10-2018 YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 SUPERFAMILY SSF52009 125 246 8.24E-37 T 14-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 PIRSF PIRSF000732 1 574 7.2E-219 T 14-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 14-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 SUPERFAMILY SSF47831 23 143 1.96E-34 T 14-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 4.5E-31 T 14-10-2018 YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 4.5E-31 T 14-10-2018 YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 4.5E-31 T 14-10-2018 YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 4.5E-31 T 14-10-2018 YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 Gene3D G3DSA:1.10.274.10 21 146 1.1E-82 T 14-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 14-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 Gene3D G3DSA:3.20.20.60 234 575 4.5E-128 T 14-10-2018 YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 2 565 1.5E-260 T 14-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 YP_2619 91c8efd0fa36d662f0d977bcb0ecf9b1 575 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 251 541 9.4E-126 T 14-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 YP_1318 e345cfaef6144b5b5d4546fc7f6b9435 340 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 9 48 1.2E-8 T 14-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YP_1318 e345cfaef6144b5b5d4546fc7f6b9435 340 SUPERFAMILY SSF161098 135 320 1.7E-18 T 14-10-2018 IPR035906 MetI-like superfamily YP_1318 e345cfaef6144b5b5d4546fc7f6b9435 340 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 157 337 1.2E-28 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1318 e345cfaef6144b5b5d4546fc7f6b9435 340 Gene3D G3DSA:1.10.3720.10 130 334 5.3E-17 T 14-10-2018 IPR035906 MetI-like superfamily YP_2602 93073811fce8a5b3985d266f1434d9c1 323 Gene3D G3DSA:3.40.367.20 100 299 9.6E-119 T 14-10-2018 YP_2602 93073811fce8a5b3985d266f1434d9c1 323 Gene3D G3DSA:3.30.420.40 6 308 9.6E-119 T 14-10-2018 YP_2602 93073811fce8a5b3985d266f1434d9c1 323 Pfam PF02685 Glucokinase 6 315 2.3E-126 T 14-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 YP_2602 93073811fce8a5b3985d266f1434d9c1 323 TIGRFAM TIGR00749 glk: glucokinase 6 310 7.1E-139 T 14-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 YP_2602 93073811fce8a5b3985d266f1434d9c1 323 SUPERFAMILY SSF53067 4 318 1.02E-64 T 14-10-2018 YP_2602 93073811fce8a5b3985d266f1434d9c1 323 Hamap MF_00524 Glucokinase [glk]. 4 316 36.055 T 14-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 YP_1254 f7a72c147559f63dbf34bd7e2803f270 308 Pfam PF01145 SPFH domain / Band 7 family 35 210 6.3E-25 T 14-10-2018 IPR001107 Band 7 domain YP_1254 f7a72c147559f63dbf34bd7e2803f270 308 SMART SM00244 31 194 0.003 T 14-10-2018 IPR001107 Band 7 domain YP_1254 f7a72c147559f63dbf34bd7e2803f270 308 SUPERFAMILY SSF117892 62 198 1.31E-13 T 14-10-2018 IPR036013 Band 7/SPFH domain superfamily YP_1254 f7a72c147559f63dbf34bd7e2803f270 308 Gene3D G3DSA:3.30.479.30 59 196 1.1E-6 T 14-10-2018 YP_2657 229eb9deb402855cbc8c53386fc8b6ac 759 ProSitePatterns PS00331 Malic enzymes signature. 159 175 - T 14-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 YP_2657 229eb9deb402855cbc8c53386fc8b6ac 759 SUPERFAMILY SSF51735 163 453 2.46E-86 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2657 229eb9deb402855cbc8c53386fc8b6ac 759 Gene3D G3DSA:3.40.50.10750 573 727 4.6E-94 T 14-10-2018 YP_2657 229eb9deb402855cbc8c53386fc8b6ac 759 Pfam PF03949 Malic enzyme, NAD binding domain 165 359 2.7E-17 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 YP_2657 229eb9deb402855cbc8c53386fc8b6ac 759 SUPERFAMILY SSF53223 10 161 2.16E-52 T 14-10-2018 YP_2657 229eb9deb402855cbc8c53386fc8b6ac 759 PIRSF PIRSF036684 1 758 0.0 T 14-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 YP_2657 229eb9deb402855cbc8c53386fc8b6ac 759 SMART SM00919 163 401 3.1E-139 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 YP_2657 229eb9deb402855cbc8c53386fc8b6ac 759 Gene3D G3DSA:3.40.50.10380 1 160 3.8E-68 T 14-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 YP_2657 229eb9deb402855cbc8c53386fc8b6ac 759 SMART SM01274 18 151 3.6E-79 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 YP_2657 229eb9deb402855cbc8c53386fc8b6ac 759 Gene3D G3DSA:3.40.50.10950 447 751 4.6E-94 T 14-10-2018 YP_2657 229eb9deb402855cbc8c53386fc8b6ac 759 Pfam PF01515 Phosphate acetyl/butaryl transferase 430 751 2.1E-99 T 14-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 YP_2657 229eb9deb402855cbc8c53386fc8b6ac 759 SUPERFAMILY SSF53659 430 755 4.11E-91 T 14-10-2018 YP_2657 229eb9deb402855cbc8c53386fc8b6ac 759 Pfam PF00390 Malic enzyme, N-terminal domain 19 151 5.2E-27 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 YP_2657 229eb9deb402855cbc8c53386fc8b6ac 759 Gene3D G3DSA:3.40.50.720 161 446 2.3E-81 T 14-10-2018 YP_0832 c183d8e22ff1d9815d0a6f85e69de28a 563 SUPERFAMILY SSF51735 418 547 1.14E-26 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0832 c183d8e22ff1d9815d0a6f85e69de28a 563 Gene3D G3DSA:3.40.50.720 416 552 7.1E-27 T 14-10-2018 YP_0832 c183d8e22ff1d9815d0a6f85e69de28a 563 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 294 9.0E-81 T 14-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 YP_0832 c183d8e22ff1d9815d0a6f85e69de28a 563 Gene3D G3DSA:1.20.1530.20 6 397 3.2E-79 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily YP_0832 c183d8e22ff1d9815d0a6f85e69de28a 563 Pfam PF00999 Sodium/hydrogen exchanger family 13 384 1.0E-79 T 14-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 YP_0832 c183d8e22ff1d9815d0a6f85e69de28a 563 Pfam PF02254 TrkA-N domain 420 534 6.9E-21 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 YP_0398 2ddb4b5211605589b3fb85d125120c4a 358 SUPERFAMILY SSF51569 11 346 9.16E-136 T 14-10-2018 YP_0398 2ddb4b5211605589b3fb85d125120c4a 358 PIRSF PIRSF001361 1 356 2.5E-163 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 YP_0398 2ddb4b5211605589b3fb85d125120c4a 358 Pfam PF00793 DAHP synthetase I family 41 342 3.5E-107 T 14-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 YP_0398 2ddb4b5211605589b3fb85d125120c4a 358 Gene3D G3DSA:3.20.20.70 4 352 1.0E-155 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_0398 2ddb4b5211605589b3fb85d125120c4a 358 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 11 349 1.6E-167 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 YP_3150 42bb3ed6e375268c4f24daae76db49e3 632 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 525 536 - T 14-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YP_3150 42bb3ed6e375268c4f24daae76db49e3 632 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 138 148 - T 14-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YP_3150 42bb3ed6e375268c4f24daae76db49e3 632 Gene3D G3DSA:3.50.30.80 437 589 4.3E-55 T 14-10-2018 YP_3150 42bb3ed6e375268c4f24daae76db49e3 632 SUPERFAMILY SSF52016 437 626 4.16E-59 T 14-10-2018 YP_3150 42bb3ed6e375268c4f24daae76db49e3 632 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 34 626 9.0E-261 T 14-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YP_3150 42bb3ed6e375268c4f24daae76db49e3 632 SUPERFAMILY SSF143975 16 436 8.37E-133 T 14-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YP_3150 42bb3ed6e375268c4f24daae76db49e3 632 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 20 626 45.006 T 14-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YP_3150 42bb3ed6e375268c4f24daae76db49e3 632 Pfam PF00920 Dehydratase family 50 623 1.2E-215 T 14-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YP_1009 556276d9b1ccec551de2f97ca40c005d 345 Hamap MF_01694 Biotin synthase [bioB]. 5 313 41.761 T 14-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 YP_1009 556276d9b1ccec551de2f97ca40c005d 345 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 220 310 1.7E-20 T 14-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 YP_1009 556276d9b1ccec551de2f97ca40c005d 345 TIGRFAM TIGR00433 bioB: biotin synthase 14 310 2.3E-125 T 14-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 YP_1009 556276d9b1ccec551de2f97ca40c005d 345 Pfam PF04055 Radical SAM superfamily 50 202 6.1E-17 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YP_1009 556276d9b1ccec551de2f97ca40c005d 345 SMART SM00729 43 255 1.7E-41 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 YP_1009 556276d9b1ccec551de2f97ca40c005d 345 SUPERFAMILY SSF102114 5 313 2.62E-95 T 14-10-2018 YP_1009 556276d9b1ccec551de2f97ca40c005d 345 Gene3D G3DSA:3.20.20.70 4 315 3.8E-135 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_1009 556276d9b1ccec551de2f97ca40c005d 345 PIRSF PIRSF001619 1 319 9.6E-139 T 14-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 YP_1009 556276d9b1ccec551de2f97ca40c005d 345 SMART SM00876 220 312 1.5E-48 T 14-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 YP_1869 4ae31d38718d86c248e587c26d7807e8 284 Pfam PF00793 DAHP synthetase I family 10 275 7.8E-68 T 14-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 YP_1869 4ae31d38718d86c248e587c26d7807e8 284 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 275 2.4E-118 T 14-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 YP_1869 4ae31d38718d86c248e587c26d7807e8 284 Gene3D G3DSA:3.20.20.70 1 284 1.7E-98 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_1869 4ae31d38718d86c248e587c26d7807e8 284 SUPERFAMILY SSF51569 3 279 6.32E-103 T 14-10-2018 YP_1869 4ae31d38718d86c248e587c26d7807e8 284 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 13 277 49.167 T 14-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 YP_1862 108d7f133a3c1eb36ddfe3697551663c 299 Gene3D G3DSA:3.30.230.10 12 170 9.7E-56 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_1862 108d7f133a3c1eb36ddfe3697551663c 299 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 13 287 3.3E-108 T 14-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 YP_1862 108d7f133a3c1eb36ddfe3697551663c 299 SUPERFAMILY SSF55060 174 288 7.91E-36 T 14-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily YP_1862 108d7f133a3c1eb36ddfe3697551663c 299 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 13 282 32.183 T 14-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 YP_1862 108d7f133a3c1eb36ddfe3697551663c 299 Gene3D G3DSA:3.30.70.890 172 290 9.2E-27 T 14-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily YP_1862 108d7f133a3c1eb36ddfe3697551663c 299 Pfam PF08544 GHMP kinases C terminal 216 267 1.0E-5 T 14-10-2018 IPR013750 GHMP kinase, C-terminal domain YP_1862 108d7f133a3c1eb36ddfe3697551663c 299 PIRSF PIRSF010376 11 290 7.4E-85 T 14-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 YP_1862 108d7f133a3c1eb36ddfe3697551663c 299 SUPERFAMILY SSF54211 14 169 8.35E-47 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_1862 108d7f133a3c1eb36ddfe3697551663c 299 Pfam PF00288 GHMP kinases N terminal domain 98 155 8.8E-11 T 14-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 YP_2636 9c19fa37e34d46ec8f906fb036076ac0 363 SMART SM00382 27 214 1.4E-18 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2636 9c19fa37e34d46ec8f906fb036076ac0 363 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2636 9c19fa37e34d46ec8f906fb036076ac0 363 SUPERFAMILY SSF52540 3 244 9.35E-85 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2636 9c19fa37e34d46ec8f906fb036076ac0 363 SUPERFAMILY SSF50331 239 326 2.15E-9 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YP_2636 9c19fa37e34d46ec8f906fb036076ac0 363 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 243 8.0E-125 T 14-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 YP_2636 9c19fa37e34d46ec8f906fb036076ac0 363 Gene3D G3DSA:3.40.50.300 2 263 4.1E-80 T 14-10-2018 YP_2636 9c19fa37e34d46ec8f906fb036076ac0 363 Pfam PF00005 ABC transporter 18 164 8.2E-36 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0589 948a5b3e5c784e1f6798eeeaee647990 324 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 248 8.1E-24 T 14-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 YP_0589 948a5b3e5c784e1f6798eeeaee647990 324 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 11 309 18.986 T 14-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_0589 948a5b3e5c784e1f6798eeeaee647990 324 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 252 309 2.2E-20 T 14-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_0589 948a5b3e5c784e1f6798eeeaee647990 324 Gene3D G3DSA:3.30.2350.10 1 249 1.3E-93 T 14-10-2018 YP_0589 948a5b3e5c784e1f6798eeeaee647990 324 Gene3D G3DSA:2.30.130.10 250 313 6.5E-28 T 14-10-2018 IPR036974 PUA domain superfamily GO:0003723 YP_0589 948a5b3e5c784e1f6798eeeaee647990 324 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 33 180 8.8E-58 T 14-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 YP_0589 948a5b3e5c784e1f6798eeeaee647990 324 SUPERFAMILY SSF88697 251 310 2.14E-14 T 14-10-2018 IPR015947 PUA-like superfamily YP_0589 948a5b3e5c784e1f6798eeeaee647990 324 SUPERFAMILY SSF55120 10 248 2.27E-82 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_0589 948a5b3e5c784e1f6798eeeaee647990 324 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 11 219 5.8E-90 T 14-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_2242 283c8fcf7549b363ecb6bab39a06e845 151 Gene3D G3DSA:2.60.40.3230 46 150 1.5E-20 T 14-10-2018 IPR038483 YcfL-like superfamily YP_2242 283c8fcf7549b363ecb6bab39a06e845 151 Pfam PF07233 Protein of unknown function (DUF1425) 60 149 3.2E-26 T 14-10-2018 IPR010824 Protein of unknown function DUF1425 YP_2710 c94fae58dd3439ebce125485ae26edd2 342 Gene3D G3DSA:3.40.190.10 25 320 5.7E-109 T 14-10-2018 YP_2710 c94fae58dd3439ebce125485ae26edd2 342 SUPERFAMILY SSF53850 21 339 1.28E-60 T 14-10-2018 YP_2710 c94fae58dd3439ebce125485ae26edd2 342 Pfam PF13416 Bacterial extracellular solute-binding protein 42 306 1.0E-36 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein YP_2710 c94fae58dd3439ebce125485ae26edd2 342 Gene3D G3DSA:3.40.190.10 125 326 5.7E-109 T 14-10-2018 YP_1838 b0b528400952d478e0dba821f8e5ba23 212 Gene3D G3DSA:3.40.1400.10 1 212 1.7E-97 T 14-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 YP_1838 b0b528400952d478e0dba821f8e5ba23 212 SUPERFAMILY SSF89623 1 161 2.62E-35 T 14-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 YP_1838 b0b528400952d478e0dba821f8e5ba23 212 Pfam PF12408 Ribose-5-phosphate isomerase 164 210 1.5E-23 T 14-10-2018 IPR022133 Ribose-5-phosphate isomerase, C-terminal YP_1838 b0b528400952d478e0dba821f8e5ba23 212 Pfam PF02502 Ribose/Galactose Isomerase 3 142 4.0E-29 T 14-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 YP_2818 ea93904e0faab3c4fb74f6ce2f6f53f2 454 Gene3D G3DSA:3.30.1850.10 1 122 2.5E-50 T 14-10-2018 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 YP_2818 ea93904e0faab3c4fb74f6ce2f6f53f2 454 SUPERFAMILY SSF102405 120 330 4.88E-42 T 14-10-2018 YP_2818 ea93904e0faab3c4fb74f6ce2f6f53f2 454 Pfam PF03641 Possible lysine decarboxylase 190 329 8.1E-33 T 14-10-2018 IPR031100 LOG family YP_2818 ea93904e0faab3c4fb74f6ce2f6f53f2 454 Pfam PF14793 Domain of unknown function (DUF4478) 4 110 2.3E-45 T 14-10-2018 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 YP_2818 ea93904e0faab3c4fb74f6ce2f6f53f2 454 Pfam PF11892 Domain of unknown function (DUF3412) 333 452 4.4E-58 T 14-10-2018 IPR021826 Domain of unknown function DUF3412 KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 YP_2818 ea93904e0faab3c4fb74f6ce2f6f53f2 454 Gene3D G3DSA:3.40.50.450 124 452 4.3E-123 T 14-10-2018 YP_1128 7ad619d92f9156192dff09a89ebdeb86 271 Gene3D G3DSA:2.60.120.10 124 270 1.9E-58 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_1128 7ad619d92f9156192dff09a89ebdeb86 271 SUPERFAMILY SSF51182 4 253 1.29E-71 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily YP_1128 7ad619d92f9156192dff09a89ebdeb86 271 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 19 264 2.4E-96 T 14-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 YP_1128 7ad619d92f9156192dff09a89ebdeb86 271 Pfam PF04962 KduI/IolB family 7 264 1.3E-109 T 14-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 YP_1128 7ad619d92f9156192dff09a89ebdeb86 271 Gene3D G3DSA:2.60.120.10 15 123 6.3E-35 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_1128 7ad619d92f9156192dff09a89ebdeb86 271 PIRSF PIRSF036628 1 269 1.9E-112 T 14-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 YP_1080 5834de8a9663be676c78792af08f6c8c 175 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 14-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 YP_1080 5834de8a9663be676c78792af08f6c8c 175 PIRSF PIRSF038996 1 172 3.0E-71 T 14-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 YP_1080 5834de8a9663be676c78792af08f6c8c 175 Pfam PF00258 Flavodoxin 6 160 4.5E-33 T 14-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 YP_1080 5834de8a9663be676c78792af08f6c8c 175 SUPERFAMILY SSF52218 4 170 4.6E-54 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_1080 5834de8a9663be676c78792af08f6c8c 175 TIGRFAM TIGR01752 flav_long: flavodoxin 4 168 5.7E-77 T 14-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 YP_1080 5834de8a9663be676c78792af08f6c8c 175 Gene3D G3DSA:3.40.50.360 2 175 3.2E-59 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_3197 4095b6c2a7244d3229ce81f047e0eac3 369 Gene3D G3DSA:3.40.190.10 156 255 2.3E-84 T 14-10-2018 YP_3197 4095b6c2a7244d3229ce81f047e0eac3 369 PIRSF PIRSF001438 41 366 1.7E-122 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YP_3197 4095b6c2a7244d3229ce81f047e0eac3 369 PRINTS PR00151 Porphobilinogen deaminase signature 180 197 5.9E-49 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YP_3197 4095b6c2a7244d3229ce81f047e0eac3 369 PRINTS PR00151 Porphobilinogen deaminase signature 101 121 5.9E-49 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YP_3197 4095b6c2a7244d3229ce81f047e0eac3 369 PRINTS PR00151 Porphobilinogen deaminase signature 286 303 5.9E-49 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YP_3197 4095b6c2a7244d3229ce81f047e0eac3 369 PRINTS PR00151 Porphobilinogen deaminase signature 132 151 5.9E-49 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YP_3197 4095b6c2a7244d3229ce81f047e0eac3 369 PRINTS PR00151 Porphobilinogen deaminase signature 199 216 5.9E-49 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YP_3197 4095b6c2a7244d3229ce81f047e0eac3 369 SUPERFAMILY SSF53850 61 275 4.07E-85 T 14-10-2018 YP_3197 4095b6c2a7244d3229ce81f047e0eac3 369 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 282 351 2.2E-22 T 14-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YP_3197 4095b6c2a7244d3229ce81f047e0eac3 369 SUPERFAMILY SSF54782 276 365 1.07E-28 T 14-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YP_3197 4095b6c2a7244d3229ce81f047e0eac3 369 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 62 269 5.7E-78 T 14-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YP_3197 4095b6c2a7244d3229ce81f047e0eac3 369 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 61 353 39.498 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YP_3197 4095b6c2a7244d3229ce81f047e0eac3 369 Gene3D G3DSA:3.40.190.10 62 272 2.3E-84 T 14-10-2018 YP_3197 4095b6c2a7244d3229ce81f047e0eac3 369 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 62 353 2.7E-113 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YP_3197 4095b6c2a7244d3229ce81f047e0eac3 369 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 287 303 - T 14-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YP_3197 4095b6c2a7244d3229ce81f047e0eac3 369 Gene3D G3DSA:3.30.160.40 277 362 1.1E-30 T 14-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1439 1471 2.0 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 994 1031 0.19 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1452 1490 2.4 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1645 1675 0.079 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1221 1252 0.0036 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 929 969 6.2E-9 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1998 2035 1.2 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 353 388 7.8E-4 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 317 353 0.11 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 514 543 2.4 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1361 1389 0.18 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1549 1576 0.31 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 668 699 0.013 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 973 1011 0.0052 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 Pfam PF04829 Pre-toxin domain with VENN motif 3030 3079 7.4E-20 T 14-10-2018 IPR006914 VENN motif-containing domain YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 24 2.0E-6 T 14-10-2018 IPR024973 ESPR domain YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 Pfam PF05860 haemagglutination activity domain 75 207 1.4E-33 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 Gene3D G3DSA:2.160.20.10 75 347 5.6E-105 T 14-10-2018 IPR012334 Pectin lyase fold YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 SUPERFAMILY SSF51126 77 356 2.51E-69 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 107 203 5.1E-23 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 SMART SM00912 88 208 8.4E-48 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 Pfam PF13332 Haemagluttinin repeat 2513 2676 5.1E-42 T 14-10-2018 IPR025157 Hemagglutinin repeat YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 Pfam PF13332 Haemagluttinin repeat 2366 2468 3.3E-7 T 14-10-2018 IPR025157 Hemagglutinin repeat YP_2919 7dbe89f0f7b39ba3acbb7700660444c6 3295 Pfam PF13332 Haemagluttinin repeat 2022 2198 0.0035 T 14-10-2018 IPR025157 Hemagglutinin repeat YP_0530 65b49c3b2ade39042c587ef213491509 428 Pfam PF16360 GTP-binding GTPase Middle Region 114 192 2.2E-28 T 14-10-2018 IPR032305 GTP-binding protein, middle domain YP_0530 65b49c3b2ade39042c587ef213491509 428 Pfam PF01926 50S ribosome-binding GTPase 200 318 8.2E-20 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_0530 65b49c3b2ade39042c587ef213491509 428 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 361 1.8E-151 T 14-10-2018 IPR016496 GTPase HflX GO:0005525 YP_0530 65b49c3b2ade39042c587ef213491509 428 SUPERFAMILY SSF54980 366 422 5.83E-14 T 14-10-2018 IPR035647 EF-G domain III/V-like YP_0530 65b49c3b2ade39042c587ef213491509 428 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 4.9E-30 T 14-10-2018 IPR025121 GTPase HflX, N-terminal YP_0530 65b49c3b2ade39042c587ef213491509 428 Gene3D G3DSA:3.40.50.11060 17 138 1.3E-36 T 14-10-2018 YP_0530 65b49c3b2ade39042c587ef213491509 428 Gene3D G3DSA:3.40.50.300 197 365 1.3E-37 T 14-10-2018 YP_0530 65b49c3b2ade39042c587ef213491509 428 PIRSF PIRSF006809 3 422 1.0E-146 T 14-10-2018 IPR016496 GTPase HflX GO:0005525 YP_0530 65b49c3b2ade39042c587ef213491509 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 1.7E-9 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_0530 65b49c3b2ade39042c587ef213491509 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 221 239 1.7E-9 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_0530 65b49c3b2ade39042c587ef213491509 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 200 220 1.7E-9 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_0530 65b49c3b2ade39042c587ef213491509 428 SUPERFAMILY SSF52540 197 375 1.69E-38 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0530 65b49c3b2ade39042c587ef213491509 428 Hamap MF_00900 GTPase HflX [hflX]. 27 390 47.508 T 14-10-2018 IPR016496 GTPase HflX GO:0005525 YP_2609 386203ee3eb1f42604fc60a77249e9ad 471 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_2609 386203ee3eb1f42604fc60a77249e9ad 471 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 461 32.767 T 14-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 YP_2609 386203ee3eb1f42604fc60a77249e9ad 471 SUPERFAMILY SSF52374 3 298 8.04E-113 T 14-10-2018 YP_2609 386203ee3eb1f42604fc60a77249e9ad 471 SUPERFAMILY SSF48163 299 461 5.89E-44 T 14-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 YP_2609 386203ee3eb1f42604fc60a77249e9ad 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 1.2E-26 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YP_2609 386203ee3eb1f42604fc60a77249e9ad 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 1.2E-26 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YP_2609 386203ee3eb1f42604fc60a77249e9ad 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 1.2E-26 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YP_2609 386203ee3eb1f42604fc60a77249e9ad 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 1.2E-26 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YP_2609 386203ee3eb1f42604fc60a77249e9ad 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 1.2E-26 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YP_2609 386203ee3eb1f42604fc60a77249e9ad 471 Gene3D G3DSA:1.10.10.350 367 470 7.5E-23 T 14-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 YP_2609 386203ee3eb1f42604fc60a77249e9ad 471 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 305 1.2E-115 T 14-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 YP_2609 386203ee3eb1f42604fc60a77249e9ad 471 Gene3D G3DSA:3.40.50.620 1 313 6.0E-135 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_2609 386203ee3eb1f42604fc60a77249e9ad 471 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 462 3.1E-200 T 14-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 122 139 2.6E-82 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 214 226 2.6E-82 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 160 176 2.6E-82 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 7 26 2.6E-82 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 140 158 2.6E-82 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 32 45 2.6E-82 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 178 195 2.6E-82 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 241 263 2.6E-82 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 94 110 2.6E-82 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 2 327 44.808 T 14-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 Gene3D G3DSA:3.40.50.460 144 253 8.2E-114 T 14-10-2018 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 SUPERFAMILY SSF53784 3 315 1.16E-108 T 14-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 ProSitePatterns PS00433 Phosphofructokinase signature. 245 263 - T 14-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 Pfam PF00365 Phosphofructokinase 4 277 2.7E-107 T 14-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 PIRSF PIRSF000532 1 327 7.6E-124 T 14-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 Gene3D G3DSA:3.40.50.450 4 281 8.2E-114 T 14-10-2018 YP_0080 d1228ac925fd8a3e54d81bcd31f2616f 327 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 4 302 1.4E-120 T 14-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 YP_2915 6a8b69d13657a0205d8a769a34d7fa87 233 Gene3D G3DSA:3.40.50.410 25 196 1.4E-17 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YP_2915 6a8b69d13657a0205d8a769a34d7fa87 233 Pfam PF00092 von Willebrand factor type A domain 27 182 1.2E-10 T 14-10-2018 IPR002035 von Willebrand factor, type A YP_2915 6a8b69d13657a0205d8a769a34d7fa87 233 SMART SM00327 24 203 9.4E-9 T 14-10-2018 IPR002035 von Willebrand factor, type A YP_2915 6a8b69d13657a0205d8a769a34d7fa87 233 SUPERFAMILY SSF53300 24 182 8.16E-19 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YP_2915 6a8b69d13657a0205d8a769a34d7fa87 233 PIRSF PIRSF020634 22 232 1.8E-89 T 14-10-2018 IPR011392 Tellurite resistance, TerY YP_1990 45f48f29c0beab731fcaebc1e5bc4b6b 84 Pfam PF13453 Transcription factor zinc-finger 6 46 6.7E-20 T 14-10-2018 IPR027392 Transcription factor zinc-finger YP_1422 e50fcc9d387395ec45ea0ba679154d88 282 Gene3D G3DSA:3.40.50.300 25 278 2.9E-62 T 14-10-2018 YP_1422 e50fcc9d387395ec45ea0ba679154d88 282 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1422 e50fcc9d387395ec45ea0ba679154d88 282 Pfam PF00005 ABC transporter 42 189 7.2E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1422 e50fcc9d387395ec45ea0ba679154d88 282 SUPERFAMILY SSF52540 24 251 6.01E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1422 e50fcc9d387395ec45ea0ba679154d88 282 SMART SM00382 50 237 5.4E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1228 147e3fca95c482f620fabf69995d72dd 87 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 68 6.2E-41 T 14-10-2018 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355 YP_1228 147e3fca95c482f620fabf69995d72dd 87 Gene3D G3DSA:2.40.50.140 2 65 3.0E-26 T 14-10-2018 YP_1228 147e3fca95c482f620fabf69995d72dd 87 PIRSF PIRSF002599 1 78 4.0E-22 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 YP_1228 147e3fca95c482f620fabf69995d72dd 87 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 14-10-2018 IPR019844 Cold-shock conserved site YP_1228 147e3fca95c482f620fabf69995d72dd 87 SMART SM00357 3 67 2.1E-28 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 YP_1228 147e3fca95c482f620fabf69995d72dd 87 PRINTS PR00050 Cold shock protein signature 25 34 1.0E-15 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1228 147e3fca95c482f620fabf69995d72dd 87 PRINTS PR00050 Cold shock protein signature 4 19 1.0E-15 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1228 147e3fca95c482f620fabf69995d72dd 87 PRINTS PR00050 Cold shock protein signature 40 58 1.0E-15 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1228 147e3fca95c482f620fabf69995d72dd 87 SUPERFAMILY SSF50249 1 66 1.2E-22 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_1228 147e3fca95c482f620fabf69995d72dd 87 Pfam PF00313 'Cold-shock' DNA-binding domain 3 64 9.5E-28 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_2450 17038ad43c354860b37f4bcce50f78f0 323 PIRSF PIRSF000355 5 320 5.4E-81 T 14-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_2450 17038ad43c354860b37f4bcce50f78f0 323 Pfam PF00268 Ribonucleotide reductase, small chain 13 278 4.7E-85 T 14-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_2450 17038ad43c354860b37f4bcce50f78f0 323 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 101 117 - T 14-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_2450 17038ad43c354860b37f4bcce50f78f0 323 TIGRFAM TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit 11 323 2.4E-144 T 14-10-2018 IPR026494 Ribonucleoside reductase subunit beta, NrdF GO:0005971|GO:0009263 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YP_2450 17038ad43c354860b37f4bcce50f78f0 323 SUPERFAMILY SSF47240 10 323 4.71E-105 T 14-10-2018 IPR009078 Ferritin-like superfamily YP_2450 17038ad43c354860b37f4bcce50f78f0 323 Gene3D G3DSA:1.10.620.20 6 292 2.9E-114 T 14-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 YP_2865 31d25d69b71ca753a7d3f8fe136040e1 406 Gene3D G3DSA:1.20.1250.20 9 393 3.7E-25 T 14-10-2018 YP_2865 31d25d69b71ca753a7d3f8fe136040e1 406 SUPERFAMILY SSF103473 14 401 1.57E-27 T 14-10-2018 IPR036259 MFS transporter superfamily YP_2865 31d25d69b71ca753a7d3f8fe136040e1 406 Pfam PF07690 Major Facilitator Superfamily 19 343 4.5E-16 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_2865 31d25d69b71ca753a7d3f8fe136040e1 406 Hamap MF_01585 Lysophospholipid transporter LplT [lplT]. 1 397 44.294 T 14-10-2018 IPR023727 Lysophospholipid transporter LplT GO:0005886|GO:0051977|GO:0051978 YP_0640 3d08fc094a0e845df22c08e0e4636cc6 167 Gene3D G3DSA:3.40.630.30 16 153 5.5E-25 T 14-10-2018 YP_0640 3d08fc094a0e845df22c08e0e4636cc6 167 Pfam PF00583 Acetyltransferase (GNAT) family 44 144 1.8E-13 T 14-10-2018 IPR000182 GNAT domain YP_0640 3d08fc094a0e845df22c08e0e4636cc6 167 SUPERFAMILY SSF55729 9 167 6.0E-30 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_2259 7f3eaee928b008b8c80fd81346c2a94d 55 Pfam PF01783 Ribosomal L32p protein family 2 54 1.1E-19 T 14-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2259 7f3eaee928b008b8c80fd81346c2a94d 55 SUPERFAMILY SSF57829 2 54 1.04E-18 T 14-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 YP_2259 7f3eaee928b008b8c80fd81346c2a94d 55 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 3.5E-20 T 14-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2259 7f3eaee928b008b8c80fd81346c2a94d 55 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.225 T 14-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_3146 aee481b9d7ae6d09892b234c537154ac 507 SUPERFAMILY SSF52540 189 502 2.98E-49 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3146 aee481b9d7ae6d09892b234c537154ac 507 SMART SM00382 210 390 7.0E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3146 aee481b9d7ae6d09892b234c537154ac 507 SUPERFAMILY SSF54211 10 169 1.56E-29 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_3146 aee481b9d7ae6d09892b234c537154ac 507 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 2.1E-44 T 14-10-2018 YP_3146 aee481b9d7ae6d09892b234c537154ac 507 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 390 2.2E-89 T 14-10-2018 IPR000523 Magnesium chelatase ChlI domain YP_3146 aee481b9d7ae6d09892b234c537154ac 507 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 401 493 4.5E-30 T 14-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain YP_3146 aee481b9d7ae6d09892b234c537154ac 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 317 330 3.6E-7 T 14-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 YP_3146 aee481b9d7ae6d09892b234c537154ac 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 209 224 3.6E-7 T 14-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 YP_3146 aee481b9d7ae6d09892b234c537154ac 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 341 353 3.6E-7 T 14-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 YP_3146 aee481b9d7ae6d09892b234c537154ac 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 289 303 3.6E-7 T 14-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 YP_3146 aee481b9d7ae6d09892b234c537154ac 507 Gene3D G3DSA:3.40.50.300 191 498 2.8E-55 T 14-10-2018 YP_3146 aee481b9d7ae6d09892b234c537154ac 507 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 493 7.0E-213 T 14-10-2018 IPR004482 Mg chelatase-related protein YP_3998 418d8c7905719b2ffb69822d5da2dd82 317 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 15 309 3.1E-62 T 14-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 YP_3998 418d8c7905719b2ffb69822d5da2dd82 317 SUPERFAMILY SSF51735 1 307 9.85E-72 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3998 418d8c7905719b2ffb69822d5da2dd82 317 Gene3D G3DSA:3.40.50.720 125 297 6.2E-77 T 14-10-2018 YP_3998 418d8c7905719b2ffb69822d5da2dd82 317 Gene3D G3DSA:3.30.1780.10 5 309 6.2E-77 T 14-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 YP_3998 418d8c7905719b2ffb69822d5da2dd82 317 PIRSF PIRSF001439 1 310 3.3E-55 T 14-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 YP_2701 3eb7d479ea29133d205e0400759487d4 566 Gene3D G3DSA:1.10.3720.10 309 561 3.9E-32 T 14-10-2018 IPR035906 MetI-like superfamily YP_2701 3eb7d479ea29133d205e0400759487d4 566 SUPERFAMILY SSF161098 281 549 1.7E-38 T 14-10-2018 IPR035906 MetI-like superfamily YP_2701 3eb7d479ea29133d205e0400759487d4 566 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 334 562 2.7E-20 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2701 3eb7d479ea29133d205e0400759487d4 566 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 298 558 5.5E-74 T 14-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 YP_3935 18a6d0d583df5a96bec4697c1ce90573 732 SUPERFAMILY SSF69255 466 553 6.02E-34 T 14-10-2018 YP_3935 18a6d0d583df5a96bec4697c1ce90573 732 Gene3D G3DSA:2.30.110.50 126 431 8.0E-94 T 14-10-2018 YP_3935 18a6d0d583df5a96bec4697c1ce90573 732 Gene3D G3DSA:2.40.50.230 459 559 2.2E-42 T 14-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YP_3935 18a6d0d583df5a96bec4697c1ce90573 732 Gene3D G3DSA:2.20.220.20 660 730 7.7E-8 T 14-10-2018 YP_3935 18a6d0d583df5a96bec4697c1ce90573 732 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 126 605 2.1E-191 T 14-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YP_3935 18a6d0d583df5a96bec4697c1ce90573 732 SUPERFAMILY SSF69279 293 467 4.08E-42 T 14-10-2018 YP_3935 18a6d0d583df5a96bec4697c1ce90573 732 SUPERFAMILY SSF69279 114 289 2.42E-56 T 14-10-2018 YP_3935 18a6d0d583df5a96bec4697c1ce90573 732 SUPERFAMILY SSF69349 544 730 3.37E-36 T 14-10-2018 YP_3935 18a6d0d583df5a96bec4697c1ce90573 732 Gene3D G3DSA:3.55.50.10 202 293 8.0E-94 T 14-10-2018 YP_3935 18a6d0d583df5a96bec4697c1ce90573 732 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 113 620 3.1E-201 T 14-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YP_3935 18a6d0d583df5a96bec4697c1ce90573 732 Pfam PF05954 Phage late control gene D protein (GPD) 134 431 2.5E-83 T 14-10-2018 YP_3935 18a6d0d583df5a96bec4697c1ce90573 732 Gene3D G3DSA:3.30.1920.30 325 388 8.0E-94 T 14-10-2018 YP_0024 b09df8cba15bec1fa7eab0fbbecef676 359 PRINTS PR00344 Bacterial sensor protein C-terminal signature 320 338 2.4E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0024 b09df8cba15bec1fa7eab0fbbecef676 359 PRINTS PR00344 Bacterial sensor protein C-terminal signature 291 305 2.4E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0024 b09df8cba15bec1fa7eab0fbbecef676 359 PRINTS PR00344 Bacterial sensor protein C-terminal signature 343 356 2.4E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0024 b09df8cba15bec1fa7eab0fbbecef676 359 SMART SM00091 17 85 6.2E-7 T 14-10-2018 IPR000014 PAS domain YP_0024 b09df8cba15bec1fa7eab0fbbecef676 359 Gene3D G3DSA:3.30.565.10 202 358 1.3E-41 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0024 b09df8cba15bec1fa7eab0fbbecef676 359 Pfam PF00989 PAS fold 21 108 4.5E-6 T 14-10-2018 IPR013767 PAS fold GO:0006355 YP_0024 b09df8cba15bec1fa7eab0fbbecef676 359 SMART SM00387 243 359 8.1E-31 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0024 b09df8cba15bec1fa7eab0fbbecef676 359 Pfam PF00512 His Kinase A (phospho-acceptor) domain 141 200 5.0E-14 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0024 b09df8cba15bec1fa7eab0fbbecef676 359 Gene3D G3DSA:1.10.287.130 126 201 4.4E-14 T 14-10-2018 YP_0024 b09df8cba15bec1fa7eab0fbbecef676 359 SUPERFAMILY SSF55785 21 107 1.42E-5 T 14-10-2018 IPR035965 PAS domain superfamily YP_0024 b09df8cba15bec1fa7eab0fbbecef676 359 SUPERFAMILY SSF55874 208 356 4.58E-35 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0024 b09df8cba15bec1fa7eab0fbbecef676 359 SMART SM00388 139 204 1.3E-14 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0024 b09df8cba15bec1fa7eab0fbbecef676 359 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 244 357 3.2E-15 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0024 b09df8cba15bec1fa7eab0fbbecef676 359 SUPERFAMILY SSF47384 131 200 7.85E-13 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_0024 b09df8cba15bec1fa7eab0fbbecef676 359 Gene3D G3DSA:3.30.450.20 19 122 1.2E-16 T 14-10-2018 YP_3099 4c6dfded1dcbca040ba733cf7e955c7a 260 Hamap MF_00297 NADH pyrophosphatase [nudC]. 1 257 44.711 T 14-10-2018 IPR022925 NADH pyrophosphatase NudC GO:0000210 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 YP_3099 4c6dfded1dcbca040ba733cf7e955c7a 260 Gene3D G3DSA:3.90.79.10 126 256 5.1E-38 T 14-10-2018 YP_3099 4c6dfded1dcbca040ba733cf7e955c7a 260 SUPERFAMILY SSF55811 79 241 2.94E-38 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YP_3099 4c6dfded1dcbca040ba733cf7e955c7a 260 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 93 124 4.4E-9 T 14-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 YP_3099 4c6dfded1dcbca040ba733cf7e955c7a 260 Gene3D G3DSA:3.90.79.20 2 125 1.3E-46 T 14-10-2018 YP_3099 4c6dfded1dcbca040ba733cf7e955c7a 260 ProSitePatterns PS00893 Nudix box signature. 159 180 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YP_3099 4c6dfded1dcbca040ba733cf7e955c7a 260 SUPERFAMILY SSF55811 2 96 7.4E-31 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YP_3099 4c6dfded1dcbca040ba733cf7e955c7a 260 Pfam PF00293 NUDIX domain 131 234 1.4E-14 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YP_0760 6388ce34e6b92dc843fc591adc4199a2 303 Gene3D G3DSA:1.10.1040.10 168 290 2.3E-44 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YP_0760 6388ce34e6b92dc843fc591adc4199a2 303 SUPERFAMILY SSF51735 1 167 7.99E-59 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0760 6388ce34e6b92dc843fc591adc4199a2 303 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 290 4.4E-84 T 14-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 YP_0760 6388ce34e6b92dc843fc591adc4199a2 303 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 168 289 3.8E-35 T 14-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain YP_0760 6388ce34e6b92dc843fc591adc4199a2 303 SUPERFAMILY SSF48179 168 289 2.14E-35 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_0760 6388ce34e6b92dc843fc591adc4199a2 303 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 142 1.6E-23 T 14-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain YP_0760 6388ce34e6b92dc843fc591adc4199a2 303 Gene3D G3DSA:3.40.50.720 1 167 2.2E-52 T 14-10-2018 YP_3643 69d1fc9cc7c0ddc4808fe4ac2085bbb8 322 SUPERFAMILY SSF46785 26 105 7.0E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3643 69d1fc9cc7c0ddc4808fe4ac2085bbb8 322 SUPERFAMILY SSF53850 112 316 1.71E-42 T 14-10-2018 YP_3643 69d1fc9cc7c0ddc4808fe4ac2085bbb8 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 67 78 5.0E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3643 69d1fc9cc7c0ddc4808fe4ac2085bbb8 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 5.0E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3643 69d1fc9cc7c0ddc4808fe4ac2085bbb8 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 57 67 5.0E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3643 69d1fc9cc7c0ddc4808fe4ac2085bbb8 322 Gene3D G3DSA:3.40.190.10 112 314 2.7E-39 T 14-10-2018 YP_3643 69d1fc9cc7c0ddc4808fe4ac2085bbb8 322 Gene3D G3DSA:1.10.10.10 21 109 1.2E-31 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3643 69d1fc9cc7c0ddc4808fe4ac2085bbb8 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 31 90 2.1E-18 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3643 69d1fc9cc7c0ddc4808fe4ac2085bbb8 322 Pfam PF03466 LysR substrate binding domain 123 315 1.5E-19 T 14-10-2018 IPR005119 LysR, substrate-binding YP_3643 69d1fc9cc7c0ddc4808fe4ac2085bbb8 322 Gene3D G3DSA:3.40.190.10 193 290 2.7E-39 T 14-10-2018 YP_2049 162b91dc88e46e2a0746eec5985ba44f 500 Gene3D G3DSA:3.40.50.10940 1 175 1.2E-88 T 14-10-2018 IPR038583 L-arabinose isomerase, N-terminal domain superfamily KEGG: 00040+5.3.1.4 YP_2049 162b91dc88e46e2a0746eec5985ba44f 500 SUPERFAMILY SSF50443 329 498 1.96E-71 T 14-10-2018 IPR004216 L-fucose/L-arabinose isomerase, C-terminal YP_2049 162b91dc88e46e2a0746eec5985ba44f 500 Pfam PF02610 L-arabinose isomerase 5 359 1.6E-177 T 14-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 YP_2049 162b91dc88e46e2a0746eec5985ba44f 500 SUPERFAMILY SSF53743 1 326 1.15E-123 T 14-10-2018 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily GO:0005737|GO:0005996|GO:0016861 YP_2049 162b91dc88e46e2a0746eec5985ba44f 500 Pfam PF11762 L-arabinose isomerase C-terminal domain 363 476 1.4E-46 T 14-10-2018 IPR024664 L-arabinose isomerase, C-terminal KEGG: 00040+5.3.1.4 YP_2049 162b91dc88e46e2a0746eec5985ba44f 500 Hamap MF_00519 L-arabinose isomerase [araA]. 1 477 64.578 T 14-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 YP_2049 162b91dc88e46e2a0746eec5985ba44f 500 ProDom PD018364 ISOMERASE L-ARABINOSE ARABINOSE METABOLISM CARBOHYDRATE CATABOLISM ARAA 1 304 1.0E-170 T 14-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 YP_2049 162b91dc88e46e2a0746eec5985ba44f 500 PIRSF PIRSF001478 1 500 3.7E-259 T 14-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 YP_1872 62804be4777affca3052b1c14c6e6d11 291 Gene3D G3DSA:3.20.20.190 15 291 2.3E-36 T 14-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YP_1872 62804be4777affca3052b1c14c6e6d11 291 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 29 285 4.8E-18 T 14-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 YP_1872 62804be4777affca3052b1c14c6e6d11 291 SUPERFAMILY SSF51695 24 290 4.71E-49 T 14-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YP_0527 acc6b6b5fa8b146f67ed9725f3e56c01 635 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 310 1.2E-102 T 14-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 YP_0527 acc6b6b5fa8b146f67ed9725f3e56c01 635 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 213 329 2.1E-38 T 14-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 YP_0527 acc6b6b5fa8b146f67ed9725f3e56c01 635 SMART SM01340 212 330 7.6E-57 T 14-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 YP_0527 acc6b6b5fa8b146f67ed9725f3e56c01 635 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 121 1.5E-12 T 14-10-2018 YP_0527 acc6b6b5fa8b146f67ed9725f3e56c01 635 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 632 26.091 T 14-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 YP_0527 acc6b6b5fa8b146f67ed9725f3e56c01 635 SUPERFAMILY SSF118116 453 631 1.96E-43 T 14-10-2018 IPR037198 MutL, C-terminal domain superfamily YP_0527 acc6b6b5fa8b146f67ed9725f3e56c01 635 SUPERFAMILY SSF54211 191 330 4.55E-38 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0527 acc6b6b5fa8b146f67ed9725f3e56c01 635 SUPERFAMILY SSF55874 1 204 1.17E-56 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0527 acc6b6b5fa8b146f67ed9725f3e56c01 635 Gene3D G3DSA:3.30.1370.100 499 587 2.4E-69 T 14-10-2018 YP_0527 acc6b6b5fa8b146f67ed9725f3e56c01 635 Gene3D G3DSA:3.30.230.10 217 329 3.8E-41 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_0527 acc6b6b5fa8b146f67ed9725f3e56c01 635 Pfam PF08676 MutL C terminal dimerisation domain 455 584 1.1E-26 T 14-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 YP_0527 acc6b6b5fa8b146f67ed9725f3e56c01 635 Gene3D G3DSA:2.30.42.20 455 630 2.4E-69 T 14-10-2018 YP_0527 acc6b6b5fa8b146f67ed9725f3e56c01 635 SMART SM00853 458 593 8.2E-15 T 14-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 YP_0527 acc6b6b5fa8b146f67ed9725f3e56c01 635 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 14-10-2018 IPR014762 DNA mismatch repair, conserved site YP_0527 acc6b6b5fa8b146f67ed9725f3e56c01 635 Gene3D G3DSA:3.30.565.10 1 216 1.2E-71 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3624 af798f41418baed6a3cecf996ce8c229 407 SMART SM00865 206 324 8.3E-56 T 14-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 YP_3624 af798f41418baed6a3cecf996ce8c229 407 ProSitePatterns PS01135 FtsZ protein signature 2. 96 117 - T 14-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 YP_3624 af798f41418baed6a3cecf996ce8c229 407 Gene3D G3DSA:3.40.50.1440 9 316 2.4E-116 T 14-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 YP_3624 af798f41418baed6a3cecf996ce8c229 407 Pfam PF12327 FtsZ family, C-terminal domain 221 315 6.3E-37 T 14-10-2018 IPR024757 Cell division protein FtsZ, C-terminal YP_3624 af798f41418baed6a3cecf996ce8c229 407 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 13 172 2.3E-41 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 YP_3624 af798f41418baed6a3cecf996ce8c229 407 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 8 343 38.05 T 14-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 YP_3624 af798f41418baed6a3cecf996ce8c229 407 SMART SM00864 12 204 6.1E-112 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 YP_3624 af798f41418baed6a3cecf996ce8c229 407 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 7 337 1.4E-141 T 14-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 YP_3624 af798f41418baed6a3cecf996ce8c229 407 ProSitePatterns PS01134 FtsZ protein signature 1. 43 77 - T 14-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 YP_3624 af798f41418baed6a3cecf996ce8c229 407 SUPERFAMILY SSF55307 203 319 3.43E-42 T 14-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 YP_3624 af798f41418baed6a3cecf996ce8c229 407 PRINTS PR00423 Cell division protein FtsZ signature 125 146 1.6E-51 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 YP_3624 af798f41418baed6a3cecf996ce8c229 407 PRINTS PR00423 Cell division protein FtsZ signature 188 210 1.6E-51 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 YP_3624 af798f41418baed6a3cecf996ce8c229 407 PRINTS PR00423 Cell division protein FtsZ signature 97 117 1.6E-51 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 YP_3624 af798f41418baed6a3cecf996ce8c229 407 PRINTS PR00423 Cell division protein FtsZ signature 211 232 1.6E-51 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 YP_3624 af798f41418baed6a3cecf996ce8c229 407 SUPERFAMILY SSF52490 12 207 1.7E-69 T 14-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 YP_3883 ed7a5dba56b414206db0c244e7e24e32 325 SMART SM00829 11 313 7.6E-4 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 YP_3883 ed7a5dba56b414206db0c244e7e24e32 325 Gene3D G3DSA:3.90.180.10 16 323 1.2E-125 T 14-10-2018 YP_3883 ed7a5dba56b414206db0c244e7e24e32 325 Gene3D G3DSA:3.40.50.720 125 292 1.2E-125 T 14-10-2018 YP_3883 ed7a5dba56b414206db0c244e7e24e32 325 SUPERFAMILY SSF50129 1 145 2.2E-46 T 14-10-2018 IPR011032 GroES-like superfamily YP_3883 ed7a5dba56b414206db0c244e7e24e32 325 Pfam PF00107 Zinc-binding dehydrogenase 158 269 8.6E-16 T 14-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 YP_3883 ed7a5dba56b414206db0c244e7e24e32 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 86 1.2E-4 T 14-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 YP_3883 ed7a5dba56b414206db0c244e7e24e32 325 SUPERFAMILY SSF51735 116 288 3.88E-39 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3883 ed7a5dba56b414206db0c244e7e24e32 325 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 2 324 2.0E-136 T 14-10-2018 IPR014188 Acrylyl-CoA reductase AcuI YP_1873 61a92c8b2d55ce2ba8e7599605effeba 360 Gene3D G3DSA:3.40.190.10 141 281 3.5E-30 T 14-10-2018 YP_1873 61a92c8b2d55ce2ba8e7599605effeba 360 Pfam PF13416 Bacterial extracellular solute-binding protein 54 331 8.9E-29 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein YP_1873 61a92c8b2d55ce2ba8e7599605effeba 360 SUPERFAMILY SSF53850 34 338 1.38E-41 T 14-10-2018 YP_1873 61a92c8b2d55ce2ba8e7599605effeba 360 Gene3D G3DSA:3.40.190.10 52 330 3.5E-30 T 14-10-2018 YP_0578 d67d2b4cbef4b2723c7a69b2454f9a00 158 SUPERFAMILY SSF54534 81 157 1.28E-24 T 14-10-2018 YP_0578 d67d2b4cbef4b2723c7a69b2454f9a00 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.737 T 14-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 YP_0578 d67d2b4cbef4b2723c7a69b2454f9a00 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 14-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 YP_0578 d67d2b4cbef4b2723c7a69b2454f9a00 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 7.5E-32 T 14-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 YP_0578 d67d2b4cbef4b2723c7a69b2454f9a00 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 156 1.7E-60 T 14-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 YP_0578 d67d2b4cbef4b2723c7a69b2454f9a00 158 Gene3D G3DSA:1.10.287.180 1 75 5.4E-33 T 14-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 YP_0578 d67d2b4cbef4b2723c7a69b2454f9a00 158 Gene3D G3DSA:3.10.50.30 76 158 5.4E-33 T 14-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 YP_0578 d67d2b4cbef4b2723c7a69b2454f9a00 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 9.8E-29 T 14-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 YP_0578 d67d2b4cbef4b2723c7a69b2454f9a00 158 PIRSF PIRSF006092 1 158 1.9E-55 T 14-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 YP_0578 d67d2b4cbef4b2723c7a69b2454f9a00 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 14-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 YP_0578 d67d2b4cbef4b2723c7a69b2454f9a00 158 SUPERFAMILY SSF46557 3 78 4.05E-29 T 14-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 YP_2543 f09f451ac5ffb5870ac753c56edcee79 445 SMART SM00382 157 300 3.1E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2543 f09f451ac5ffb5870ac753c56edcee79 445 Pfam PF00072 Response regulator receiver domain 10 118 1.2E-30 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_2543 f09f451ac5ffb5870ac753c56edcee79 445 Gene3D G3DSA:3.40.50.2300 5 132 2.0E-36 T 14-10-2018 YP_2543 f09f451ac5ffb5870ac753c56edcee79 445 Pfam PF00158 Sigma-54 interaction domain 137 303 5.1E-72 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 YP_2543 f09f451ac5ffb5870ac753c56edcee79 445 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 350 359 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site YP_2543 f09f451ac5ffb5870ac753c56edcee79 445 Gene3D G3DSA:1.10.8.60 308 386 3.6E-22 T 14-10-2018 YP_2543 f09f451ac5ffb5870ac753c56edcee79 445 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 161 174 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YP_2543 f09f451ac5ffb5870ac753c56edcee79 445 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 223 238 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YP_2543 f09f451ac5ffb5870ac753c56edcee79 445 SMART SM00448 7 118 2.8E-34 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_2543 f09f451ac5ffb5870ac753c56edcee79 445 Gene3D G3DSA:3.40.50.300 133 307 1.3E-63 T 14-10-2018 YP_2543 f09f451ac5ffb5870ac753c56edcee79 445 SUPERFAMILY SSF52540 136 381 1.66E-70 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2543 f09f451ac5ffb5870ac753c56edcee79 445 SUPERFAMILY SSF46689 388 438 1.85E-7 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2543 f09f451ac5ffb5870ac753c56edcee79 445 SUPERFAMILY SSF52172 6 181 5.27E-43 T 14-10-2018 IPR011006 CheY-like superfamily YP_2543 f09f451ac5ffb5870ac753c56edcee79 445 Gene3D G3DSA:1.10.10.60 389 441 1.5E-9 T 14-10-2018 YP_0852 03b0f69a26e51006ac9e21ce07d1ccaf 476 Gene3D G3DSA:3.40.50.620 3 320 9.3E-135 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0852 03b0f69a26e51006ac9e21ce07d1ccaf 476 SUPERFAMILY SSF52374 16 328 1.34E-101 T 14-10-2018 YP_0852 03b0f69a26e51006ac9e21ce07d1ccaf 476 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 17 476 39.261 T 14-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 YP_0852 03b0f69a26e51006ac9e21ce07d1ccaf 476 Pfam PF09190 DALR domain 356 417 2.0E-24 T 14-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 YP_0852 03b0f69a26e51006ac9e21ce07d1ccaf 476 Gene3D G3DSA:1.20.120.640 321 476 1.9E-56 T 14-10-2018 YP_0852 03b0f69a26e51006ac9e21ce07d1ccaf 476 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 17 475 1.3E-192 T 14-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 YP_0852 03b0f69a26e51006ac9e21ce07d1ccaf 476 SUPERFAMILY SSF47323 331 475 1.44E-43 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_0852 03b0f69a26e51006ac9e21ce07d1ccaf 476 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 30 328 9.2E-142 T 14-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 YP_0852 03b0f69a26e51006ac9e21ce07d1ccaf 476 SMART SM00840 356 417 1.9E-27 T 14-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 YP_0852 03b0f69a26e51006ac9e21ce07d1ccaf 476 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 40 51 1.3E-29 T 14-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 YP_0852 03b0f69a26e51006ac9e21ce07d1ccaf 476 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 206 224 1.3E-29 T 14-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 YP_0852 03b0f69a26e51006ac9e21ce07d1ccaf 476 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 237 258 1.3E-29 T 14-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 YP_0852 03b0f69a26e51006ac9e21ce07d1ccaf 476 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 76 85 1.3E-29 T 14-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 YP_3123 7584d2bbcf9a54c9df94f8f8785d865a 334 SMART SM00859 3 146 1.8E-53 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 YP_3123 7584d2bbcf9a54c9df94f8f8785d865a 334 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 333 2.6E-127 T 14-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YP_3123 7584d2bbcf9a54c9df94f8f8785d865a 334 SUPERFAMILY SSF55347 154 308 2.99E-49 T 14-10-2018 YP_3123 7584d2bbcf9a54c9df94f8f8785d865a 334 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 163 311 2.1E-14 T 14-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YP_3123 7584d2bbcf9a54c9df94f8f8785d865a 334 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 334 39.911 T 14-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YP_3123 7584d2bbcf9a54c9df94f8f8785d865a 334 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 146 2.4E-33 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 YP_3123 7584d2bbcf9a54c9df94f8f8785d865a 334 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 149 165 - T 14-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YP_3123 7584d2bbcf9a54c9df94f8f8785d865a 334 Gene3D G3DSA:3.30.360.10 153 312 1.7E-127 T 14-10-2018 YP_3123 7584d2bbcf9a54c9df94f8f8785d865a 334 Gene3D G3DSA:3.40.50.720 6 330 1.7E-127 T 14-10-2018 YP_3123 7584d2bbcf9a54c9df94f8f8785d865a 334 SUPERFAMILY SSF51735 2 182 2.12E-46 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3760 724d00d48da985fb7193a516482be16b 1028 Gene3D G3DSA:3.30.70.1430 559 657 4.6E-249 T 14-10-2018 YP_3760 724d00d48da985fb7193a516482be16b 1028 Gene3D G3DSA:3.30.2090.10 709 799 4.6E-249 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_3760 724d00d48da985fb7193a516482be16b 1028 Gene3D G3DSA:3.30.70.1320 136 328 4.6E-249 T 14-10-2018 YP_3760 724d00d48da985fb7193a516482be16b 1028 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 1.9E-19 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_3760 724d00d48da985fb7193a516482be16b 1028 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 1.9E-19 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_3760 724d00d48da985fb7193a516482be16b 1028 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.9E-19 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_3760 724d00d48da985fb7193a516482be16b 1028 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 1.9E-19 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_3760 724d00d48da985fb7193a516482be16b 1028 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 1.9E-19 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_3760 724d00d48da985fb7193a516482be16b 1028 Gene3D G3DSA:3.30.70.1440 658 859 4.6E-249 T 14-10-2018 YP_3760 724d00d48da985fb7193a516482be16b 1028 Gene3D G3DSA:3.30.70.1430 40 807 4.6E-249 T 14-10-2018 YP_3760 724d00d48da985fb7193a516482be16b 1028 SUPERFAMILY SSF82693 136 326 9.77E-23 T 14-10-2018 YP_3760 724d00d48da985fb7193a516482be16b 1028 SUPERFAMILY SSF82693 40 135 8.63E-19 T 14-10-2018 YP_3760 724d00d48da985fb7193a516482be16b 1028 SUPERFAMILY SSF82714 722 792 1.14E-8 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_3760 724d00d48da985fb7193a516482be16b 1028 SUPERFAMILY SSF82693 559 632 8.89E-6 T 14-10-2018 YP_3760 724d00d48da985fb7193a516482be16b 1028 SUPERFAMILY SSF82714 184 268 3.66E-12 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_3760 724d00d48da985fb7193a516482be16b 1028 SUPERFAMILY SSF82866 795 1014 1.29E-45 T 14-10-2018 YP_3760 724d00d48da985fb7193a516482be16b 1028 Pfam PF00873 AcrB/AcrD/AcrF family 6 1011 1.5E-161 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_3760 724d00d48da985fb7193a516482be16b 1028 Gene3D G3DSA:1.20.1640.10 508 1010 4.6E-249 T 14-10-2018 YP_3760 724d00d48da985fb7193a516482be16b 1028 Gene3D G3DSA:3.30.2090.10 179 271 4.6E-249 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_3760 724d00d48da985fb7193a516482be16b 1028 SUPERFAMILY SSF82866 293 489 1.83E-36 T 14-10-2018 YP_3760 724d00d48da985fb7193a516482be16b 1028 Gene3D G3DSA:1.20.1640.10 13 507 4.6E-249 T 14-10-2018 YP_2959 7864b395b2d16ed221ecee88809660f4 582 SMART SM00400 36 90 1.4E-36 T 14-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 YP_2959 7864b395b2d16ed221ecee88809660f4 582 Pfam PF01807 CHC2 zinc finger 7 100 3.3E-40 T 14-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 YP_2959 7864b395b2d16ed221ecee88809660f4 582 Gene3D G3DSA:1.10.860.10 435 581 9.7E-53 T 14-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YP_2959 7864b395b2d16ed221ecee88809660f4 582 TIGRFAM TIGR01391 dnaG: DNA primase 4 419 1.1E-150 T 14-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 YP_2959 7864b395b2d16ed221ecee88809660f4 582 Gene3D G3DSA:3.90.580.10 1 101 4.1E-37 T 14-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 YP_2959 7864b395b2d16ed221ecee88809660f4 582 Pfam PF13155 Toprim-like 263 348 2.0E-14 T 14-10-2018 YP_2959 7864b395b2d16ed221ecee88809660f4 582 SUPERFAMILY SSF117023 447 578 2.48E-46 T 14-10-2018 YP_2959 7864b395b2d16ed221ecee88809660f4 582 Hamap MF_00974 DNA primase [dnaG]. 4 576 30.407 T 14-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 YP_2959 7864b395b2d16ed221ecee88809660f4 582 SUPERFAMILY SSF57783 4 100 5.27E-35 T 14-10-2018 YP_2959 7864b395b2d16ed221ecee88809660f4 582 Pfam PF08275 DNA primase catalytic core, N-terminal domain 126 251 4.7E-44 T 14-10-2018 IPR013264 DNA primase, catalytic core, N-terminal YP_2959 7864b395b2d16ed221ecee88809660f4 582 Gene3D G3DSA:1.20.50.20 368 426 2.6E-28 T 14-10-2018 YP_2959 7864b395b2d16ed221ecee88809660f4 582 Pfam PF08278 DNA primase DnaG DnaB-binding 451 574 5.4E-35 T 14-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 YP_2959 7864b395b2d16ed221ecee88809660f4 582 SUPERFAMILY SSF56731 115 427 1.48E-114 T 14-10-2018 YP_2959 7864b395b2d16ed221ecee88809660f4 582 SMART SM00766 450 575 2.4E-55 T 14-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 YP_2959 7864b395b2d16ed221ecee88809660f4 582 Gene3D G3DSA:3.90.980.10 115 240 1.8E-48 T 14-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily YP_2959 7864b395b2d16ed221ecee88809660f4 582 Gene3D G3DSA:3.40.1360.10 241 367 2.8E-44 T 14-10-2018 YP_2959 7864b395b2d16ed221ecee88809660f4 582 SMART SM00493 259 330 1.8E-22 T 14-10-2018 IPR006171 TOPRIM domain YP_2959 7864b395b2d16ed221ecee88809660f4 582 Pfam PF10410 DnaB-helicase binding domain of primase 370 424 1.6E-12 T 14-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 YP_2478 55baad91c73219333b401fd2311f61de 126 TIGRFAM TIGR00494 crcB: protein CrcB 7 125 2.5E-23 T 14-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 YP_2478 55baad91c73219333b401fd2311f61de 126 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 121 2.8E-20 T 14-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 YP_2478 55baad91c73219333b401fd2311f61de 126 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 6 126 18.498 T 14-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 YP_2147 5434025266aa6f9bb2a6796872f44c09 330 SMART SM00382 32 235 1.6E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2147 5434025266aa6f9bb2a6796872f44c09 330 Gene3D G3DSA:3.40.50.300 2 329 6.3E-75 T 14-10-2018 YP_2147 5434025266aa6f9bb2a6796872f44c09 330 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 323 2.4E-20 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YP_2147 5434025266aa6f9bb2a6796872f44c09 330 SUPERFAMILY SSF52540 3 266 1.96E-51 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2147 5434025266aa6f9bb2a6796872f44c09 330 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 305 3.6E-16 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YP_2147 5434025266aa6f9bb2a6796872f44c09 330 Pfam PF00005 ABC transporter 24 187 1.1E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2991 1c17e5e8d9910a7b6ba615f00c0003a8 277 PRINTS PR00069 Aldo-keto reductase signature 91 109 1.7E-45 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_2991 1c17e5e8d9910a7b6ba615f00c0003a8 277 PRINTS PR00069 Aldo-keto reductase signature 196 220 1.7E-45 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_2991 1c17e5e8d9910a7b6ba615f00c0003a8 277 PRINTS PR00069 Aldo-keto reductase signature 123 140 1.7E-45 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_2991 1c17e5e8d9910a7b6ba615f00c0003a8 277 PRINTS PR00069 Aldo-keto reductase signature 157 186 1.7E-45 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_2991 1c17e5e8d9910a7b6ba615f00c0003a8 277 PRINTS PR00069 Aldo-keto reductase signature 37 61 1.7E-45 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_2991 1c17e5e8d9910a7b6ba615f00c0003a8 277 Gene3D G3DSA:3.20.20.100 1 275 6.8E-117 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_2991 1c17e5e8d9910a7b6ba615f00c0003a8 277 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 229 244 - T 14-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 YP_2991 1c17e5e8d9910a7b6ba615f00c0003a8 277 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 123 140 - T 14-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 YP_2991 1c17e5e8d9910a7b6ba615f00c0003a8 277 Pfam PF00248 Aldo/keto reductase family 18 260 8.0E-48 T 14-10-2018 IPR023210 NADP-dependent oxidoreductase domain YP_2991 1c17e5e8d9910a7b6ba615f00c0003a8 277 PIRSF PIRSF000097 1 270 1.9E-91 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_2991 1c17e5e8d9910a7b6ba615f00c0003a8 277 SUPERFAMILY SSF51430 1 267 1.09E-86 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_2991 1c17e5e8d9910a7b6ba615f00c0003a8 277 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 41 58 - T 14-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 YP_0498 255bbf0b5fca84ef80a47b25c3ac9306 715 SMART SM00926 1 54 2.4E-17 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_0498 255bbf0b5fca84ef80a47b25c3ac9306 715 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 6 684 4.4E-270 T 14-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 YP_0498 255bbf0b5fca84ef80a47b25c3ac9306 715 Pfam PF01568 Molydopterin dinucleotide binding domain 574 681 1.4E-27 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 YP_0498 255bbf0b5fca84ef80a47b25c3ac9306 715 SUPERFAMILY SSF53706 1 561 2.62E-196 T 14-10-2018 YP_0498 255bbf0b5fca84ef80a47b25c3ac9306 715 Gene3D G3DSA:2.20.25.90 1 55 3.0E-18 T 14-10-2018 YP_0498 255bbf0b5fca84ef80a47b25c3ac9306 715 Gene3D G3DSA:3.40.228.10 142 340 2.4E-175 T 14-10-2018 YP_0498 255bbf0b5fca84ef80a47b25c3ac9306 715 Gene3D G3DSA:2.40.40.20 571 687 5.1E-40 T 14-10-2018 YP_0498 255bbf0b5fca84ef80a47b25c3ac9306 715 Gene3D G3DSA:3.40.50.740 67 530 2.4E-175 T 14-10-2018 YP_0498 255bbf0b5fca84ef80a47b25c3ac9306 715 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 433 450 - T 14-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 YP_0498 255bbf0b5fca84ef80a47b25c3ac9306 715 Pfam PF00384 Molybdopterin oxidoreductase 61 486 3.1E-93 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_0498 255bbf0b5fca84ef80a47b25c3ac9306 715 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 6 23 - T 14-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 YP_0498 255bbf0b5fca84ef80a47b25c3ac9306 715 SUPERFAMILY SSF50692 564 700 3.84E-41 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily YP_0498 255bbf0b5fca84ef80a47b25c3ac9306 715 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 1 53 1.9E-14 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_0498 255bbf0b5fca84ef80a47b25c3ac9306 715 PIRSF PIRSF000144 55 440 1.2E-60 T 14-10-2018 YP_0498 255bbf0b5fca84ef80a47b25c3ac9306 715 PIRSF PIRSF000144 536 691 8.9 T 14-10-2018 YP_2725 e423a1b3da52f31559faafe3b1c96ec4 266 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 7 262 1.0E-100 T 14-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 YP_2725 e423a1b3da52f31559faafe3b1c96ec4 266 SUPERFAMILY SSF53613 5 266 1.06E-77 T 14-10-2018 IPR029056 Ribokinase-like YP_2725 e423a1b3da52f31559faafe3b1c96ec4 266 Gene3D G3DSA:3.40.1190.20 1 266 1.3E-99 T 14-10-2018 IPR029056 Ribokinase-like YP_2725 e423a1b3da52f31559faafe3b1c96ec4 266 Pfam PF08543 Phosphomethylpyrimidine kinase 13 260 7.1E-93 T 14-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 YP_1189 4dfb3a8b558329f8efb2daeebc6f291b 233 Pfam PF04288 MukE-like family 1 217 2.1E-126 T 14-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 YP_1189 4dfb3a8b558329f8efb2daeebc6f291b 233 Hamap MF_01802 Chromosome partition protein MukE [mukE]. 1 231 52.24 T 14-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 YP_1189 4dfb3a8b558329f8efb2daeebc6f291b 233 Gene3D G3DSA:1.10.10.2260 79 186 2.6E-54 T 14-10-2018 YP_1189 4dfb3a8b558329f8efb2daeebc6f291b 233 Gene3D G3DSA:1.10.10.2250 1 69 3.2E-35 T 14-10-2018 YP_2665 240411d9b22267edefdc750ec4cbb0ba 92 Pfam PF09904 Winged helix-turn helix 3 90 2.2E-39 T 14-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 YP_2665 240411d9b22267edefdc750ec4cbb0ba 92 Gene3D G3DSA:1.10.10.10 2 92 5.4E-35 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2665 240411d9b22267edefdc750ec4cbb0ba 92 PIRSF PIRSF037266 1 92 1.5E-41 T 14-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 Gene3D G3DSA:3.40.50.300 110 275 1.4E-118 T 14-10-2018 YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 Pfam PF03144 Elongation factor Tu domain 2 314 380 6.1E-13 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 4 527 52.19 T 14-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 PRINTS PR00315 GTP-binding elongation factor signature 101 112 6.6E-11 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 PRINTS PR00315 GTP-binding elongation factor signature 15 28 6.6E-11 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 PRINTS PR00315 GTP-binding elongation factor signature 137 146 6.6E-11 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 PRINTS PR00315 GTP-binding elongation factor signature 85 95 6.6E-11 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 PRINTS PR00315 GTP-binding elongation factor signature 65 73 6.6E-11 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 SUPERFAMILY SSF52540 10 277 1.86E-86 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 Gene3D G3DSA:3.30.70.3280 390 529 1.1E-51 T 14-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 Pfam PF16658 Class II release factor RF3, C-terminal domain 387 514 2.8E-46 T 14-10-2018 IPR032090 Peptide chain release factor 3, C-terminal YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 15 162 1.2E-18 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 SUPERFAMILY SSF50447 262 393 9.94E-30 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 SUPERFAMILY SSF54980 393 468 4.32E-17 T 14-10-2018 IPR035647 EF-G domain III/V-like YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 6 529 0.0 T 14-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 Gene3D G3DSA:3.40.50.300 72 379 1.4E-118 T 14-10-2018 YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 Pfam PF00009 Elongation factor Tu GTP binding domain 13 277 1.3E-45 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_3751 81fcedc547f57ed3e31d7c35d2359a1c 529 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site YP_1047 83d9049de0a350535a62e1a4492ec766 129 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 123 4.5E-29 T 14-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_1047 83d9049de0a350535a62e1a4492ec766 129 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 84 97 - T 14-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_1047 83d9049de0a350535a62e1a4492ec766 129 SUPERFAMILY SSF81343 3 129 3.05E-34 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_1047 83d9049de0a350535a62e1a4492ec766 129 Gene3D G3DSA:1.20.1300.10 1 129 1.1E-46 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_1047 83d9049de0a350535a62e1a4492ec766 129 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 7 126 4.2E-39 T 14-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_1047 83d9049de0a350535a62e1a4492ec766 129 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 9 33 - T 14-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_1047 83d9049de0a350535a62e1a4492ec766 129 PIRSF PIRSF000178 2 129 8.4E-32 T 14-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_2367 eac37ba12458a9efea3fd6a23c1c7388 314 Gene3D G3DSA:3.40.190.10 107 273 1.3E-61 T 14-10-2018 YP_2367 eac37ba12458a9efea3fd6a23c1c7388 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 75 1.3E-13 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2367 eac37ba12458a9efea3fd6a23c1c7388 314 Pfam PF03466 LysR substrate binding domain 102 277 8.7E-28 T 14-10-2018 IPR005119 LysR, substrate-binding YP_2367 eac37ba12458a9efea3fd6a23c1c7388 314 Gene3D G3DSA:1.10.10.10 8 96 2.1E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2367 eac37ba12458a9efea3fd6a23c1c7388 314 SUPERFAMILY SSF46785 11 123 1.63E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_2367 eac37ba12458a9efea3fd6a23c1c7388 314 Gene3D G3DSA:3.40.190.10 173 266 1.3E-61 T 14-10-2018 YP_2367 eac37ba12458a9efea3fd6a23c1c7388 314 SUPERFAMILY SSF53850 100 293 1.18E-29 T 14-10-2018 YP_2367 eac37ba12458a9efea3fd6a23c1c7388 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 53 64 4.8E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2367 eac37ba12458a9efea3fd6a23c1c7388 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 43 4.8E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2367 eac37ba12458a9efea3fd6a23c1c7388 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 53 4.8E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3437 73e3773419e25541d0623b60bb2d30c0 741 SUPERFAMILY SSF69349 469 716 3.45E-48 T 14-10-2018 YP_3437 73e3773419e25541d0623b60bb2d30c0 741 SUPERFAMILY SSF69255 391 478 1.36E-33 T 14-10-2018 YP_3437 73e3773419e25541d0623b60bb2d30c0 741 Gene3D G3DSA:3.30.1920.30 250 313 6.0E-94 T 14-10-2018 YP_3437 73e3773419e25541d0623b60bb2d30c0 741 Gene3D G3DSA:2.30.110.50 51 356 6.0E-94 T 14-10-2018 YP_3437 73e3773419e25541d0623b60bb2d30c0 741 Pfam PF05954 Phage late control gene D protein (GPD) 58 356 1.3E-86 T 14-10-2018 YP_3437 73e3773419e25541d0623b60bb2d30c0 741 SUPERFAMILY SSF69279 218 392 1.21E-42 T 14-10-2018 YP_3437 73e3773419e25541d0623b60bb2d30c0 741 Pfam PF06715 Gp5 C-terminal repeat (3 copies) 530 551 1.5E-4 T 14-10-2018 IPR010609 Gp5, C-terminal YP_3437 73e3773419e25541d0623b60bb2d30c0 741 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 51 530 3.9E-206 T 14-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YP_3437 73e3773419e25541d0623b60bb2d30c0 741 Gene3D G3DSA:2.40.50.230 384 484 1.5E-42 T 14-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YP_3437 73e3773419e25541d0623b60bb2d30c0 741 Gene3D G3DSA:3.55.50.10 127 218 6.0E-94 T 14-10-2018 YP_3437 73e3773419e25541d0623b60bb2d30c0 741 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 40 548 1.8E-204 T 14-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YP_3437 73e3773419e25541d0623b60bb2d30c0 741 SUPERFAMILY SSF69279 40 214 9.64E-55 T 14-10-2018 YP_3219 db432fc872d7dc60b3bf31074be6a42f 312 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 47 303 2.3E-62 T 14-10-2018 IPR000150 Cof family GO:0016787 YP_3219 db432fc872d7dc60b3bf31074be6a42f 312 SUPERFAMILY SSF56784 43 308 4.84E-69 T 14-10-2018 IPR036412 HAD-like superfamily YP_3219 db432fc872d7dc60b3bf31074be6a42f 312 Gene3D G3DSA:3.30.1240.10 125 229 1.4E-80 T 14-10-2018 YP_3219 db432fc872d7dc60b3bf31074be6a42f 312 ProSitePatterns PS01228 Hypothetical cof family signature 1. 47 58 - T 14-10-2018 YP_3219 db432fc872d7dc60b3bf31074be6a42f 312 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 48 272 2.2E-26 T 14-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 YP_3219 db432fc872d7dc60b3bf31074be6a42f 312 Gene3D G3DSA:3.40.50.1000 48 299 1.4E-80 T 14-10-2018 IPR023214 HAD superfamily YP_3219 db432fc872d7dc60b3bf31074be6a42f 312 Pfam PF08282 haloacid dehalogenase-like hydrolase 48 303 5.0E-61 T 14-10-2018 YP_1756 c389437d5dc8354c03c2a392c4a25074 234 Gene3D G3DSA:3.40.50.300 4 230 2.2E-66 T 14-10-2018 YP_1756 c389437d5dc8354c03c2a392c4a25074 234 Pfam PF00005 ABC transporter 26 174 9.0E-37 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1756 c389437d5dc8354c03c2a392c4a25074 234 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1756 c389437d5dc8354c03c2a392c4a25074 234 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 6 225 6.0E-110 T 14-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 YP_1756 c389437d5dc8354c03c2a392c4a25074 234 SUPERFAMILY SSF52540 6 226 6.34E-68 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1756 c389437d5dc8354c03c2a392c4a25074 234 SMART SM00382 35 230 5.0E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3590 ccb354cdbdab3bdf3ac35a1b65ba8202 492 Pfam PF06123 Inner membrane protein CreD 13 435 3.9E-149 T 14-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD YP_3590 ccb354cdbdab3bdf3ac35a1b65ba8202 492 PIRSF PIRSF004548 1 466 2.2E-196 T 14-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD YP_0335 348997eb3f2665fb67387d0dc71ec384 382 SMART SM00829 37 377 0.0013 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 YP_0335 348997eb3f2665fb67387d0dc71ec384 382 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 54 165 8.8E-26 T 14-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 YP_0335 348997eb3f2665fb67387d0dc71ec384 382 Gene3D G3DSA:3.40.50.720 189 326 2.8E-94 T 14-10-2018 YP_0335 348997eb3f2665fb67387d0dc71ec384 382 Pfam PF00107 Zinc-binding dehydrogenase 213 329 1.3E-22 T 14-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 YP_0335 348997eb3f2665fb67387d0dc71ec384 382 SUPERFAMILY SSF50129 29 208 6.92E-47 T 14-10-2018 IPR011032 GroES-like superfamily YP_0335 348997eb3f2665fb67387d0dc71ec384 382 SUPERFAMILY SSF51735 179 332 2.37E-36 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0335 348997eb3f2665fb67387d0dc71ec384 382 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 96 110 - T 14-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 YP_0335 348997eb3f2665fb67387d0dc71ec384 382 Gene3D G3DSA:3.90.180.10 37 366 2.8E-94 T 14-10-2018 YP_pCD83 3870b4ac5b7ee95c2edf3ae5a251a134 165 SUPERFAMILY SSF53098 1 149 2.53E-36 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_pCD83 3870b4ac5b7ee95c2edf3ae5a251a134 165 Gene3D G3DSA:3.30.420.10 1 141 9.7E-17 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_pCD83 3870b4ac5b7ee95c2edf3ae5a251a134 165 Pfam PF13683 Integrase core domain 78 144 1.2E-32 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_0420 c4be1e2c397ccb203281d0b3ec892852 684 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 141 164 - T 14-10-2018 IPR025505 FHIPEP conserved site YP_0420 c4be1e2c397ccb203281d0b3ec892852 684 Gene3D G3DSA:1.10.8.540 489 577 3.4E-31 T 14-10-2018 YP_0420 c4be1e2c397ccb203281d0b3ec892852 684 Gene3D G3DSA:3.40.30.60 358 488 6.0E-10 T 14-10-2018 YP_0420 c4be1e2c397ccb203281d0b3ec892852 684 PIRSF PIRSF005419 3 678 3.0E-226 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_0420 c4be1e2c397ccb203281d0b3ec892852 684 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 37 50 8.3E-55 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_0420 c4be1e2c397ccb203281d0b3ec892852 684 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 185 202 8.3E-55 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_0420 c4be1e2c397ccb203281d0b3ec892852 684 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 74 93 8.3E-55 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_0420 c4be1e2c397ccb203281d0b3ec892852 684 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 136 152 8.3E-55 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_0420 c4be1e2c397ccb203281d0b3ec892852 684 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 155 173 8.3E-55 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_0420 c4be1e2c397ccb203281d0b3ec892852 684 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 236 250 8.3E-55 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_0420 c4be1e2c397ccb203281d0b3ec892852 684 TIGRFAM TIGR01399 hrcV: type III secretion protein, HrcV family 18 673 1.2E-269 T 14-10-2018 IPR006302 Type III secretion protein HrcV GO:0015031|GO:0016021 YP_0420 c4be1e2c397ccb203281d0b3ec892852 684 Pfam PF00771 FHIPEP family 31 665 4.7E-218 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_0420 c4be1e2c397ccb203281d0b3ec892852 684 Gene3D G3DSA:1.10.490.80 579 673 3.8E-25 T 14-10-2018 YP_pMT045 5a45bd8038496a617a9a12b0cd6e9001 162 Gene3D G3DSA:1.10.3420.10 6 88 8.5E-8 T 14-10-2018 IPR023292 NTP pyrophosphohydrolase-like domain superfamily YP_pMT045 5a45bd8038496a617a9a12b0cd6e9001 162 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 16 80 9.9E-11 T 14-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 YP_3895 54ce61f4cf462698308f6b6942b6af2c 158 SUPERFAMILY SSF160631 53 141 1.26E-5 T 14-10-2018 YP_pCD52 a601ca0cea4a98ca0a016ab23d73aa33 324 PRINTS PR01592 Low calcium response V antigen signature 108 126 5.3E-126 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 YP_pCD52 a601ca0cea4a98ca0a016ab23d73aa33 324 PRINTS PR01592 Low calcium response V antigen signature 257 278 5.3E-126 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 YP_pCD52 a601ca0cea4a98ca0a016ab23d73aa33 324 PRINTS PR01592 Low calcium response V antigen signature 298 320 5.3E-126 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 YP_pCD52 a601ca0cea4a98ca0a016ab23d73aa33 324 PRINTS PR01592 Low calcium response V antigen signature 279 298 5.3E-126 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 YP_pCD52 a601ca0cea4a98ca0a016ab23d73aa33 324 PRINTS PR01592 Low calcium response V antigen signature 130 150 5.3E-126 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 YP_pCD52 a601ca0cea4a98ca0a016ab23d73aa33 324 PRINTS PR01592 Low calcium response V antigen signature 33 58 5.3E-126 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 YP_pCD52 a601ca0cea4a98ca0a016ab23d73aa33 324 PRINTS PR01592 Low calcium response V antigen signature 153 175 5.3E-126 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 YP_pCD52 a601ca0cea4a98ca0a016ab23d73aa33 324 PRINTS PR01592 Low calcium response V antigen signature 178 201 5.3E-126 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 YP_pCD52 a601ca0cea4a98ca0a016ab23d73aa33 324 PRINTS PR01592 Low calcium response V antigen signature 235 255 5.3E-126 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 YP_pCD52 a601ca0cea4a98ca0a016ab23d73aa33 324 Pfam PF04792 V antigen (LcrV) protein 1 323 1.8E-200 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 YP_pCD52 a601ca0cea4a98ca0a016ab23d73aa33 324 SUPERFAMILY SSF103388 29 321 3.79E-129 T 14-10-2018 IPR036139 Virulence-associated V antigen superfamily GO:0005576|GO:0009405 YP_1214 9c6849038d944de22a72d80203744284 430 PIRSF PIRSF001529 1 430 6.7E-183 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 YP_1214 9c6849038d944de22a72d80203744284 430 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 423 5.4E-180 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 YP_1214 9c6849038d944de22a72d80203744284 430 Gene3D G3DSA:1.10.287.40 1 104 3.8E-19 T 14-10-2018 YP_1214 9c6849038d944de22a72d80203744284 430 Gene3D G3DSA:3.30.930.10 105 430 7.8E-116 T 14-10-2018 YP_1214 9c6849038d944de22a72d80203744284 430 SUPERFAMILY SSF55681 116 425 3.14E-100 T 14-10-2018 YP_1214 9c6849038d944de22a72d80203744284 430 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 428 42.014 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 YP_1214 9c6849038d944de22a72d80203744284 430 SUPERFAMILY SSF46589 1 112 7.32E-31 T 14-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 YP_1214 9c6849038d944de22a72d80203744284 430 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 6.9E-30 T 14-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 YP_1214 9c6849038d944de22a72d80203744284 430 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 227 406 7.3E-36 T 14-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1214 9c6849038d944de22a72d80203744284 430 PRINTS PR00981 Seryl-tRNA synthetase signature 322 335 8.3E-34 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 YP_1214 9c6849038d944de22a72d80203744284 430 PRINTS PR00981 Seryl-tRNA synthetase signature 282 295 8.3E-34 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 YP_1214 9c6849038d944de22a72d80203744284 430 PRINTS PR00981 Seryl-tRNA synthetase signature 339 355 8.3E-34 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 YP_1214 9c6849038d944de22a72d80203744284 430 PRINTS PR00981 Seryl-tRNA synthetase signature 270 282 8.3E-34 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 YP_1214 9c6849038d944de22a72d80203744284 430 PRINTS PR00981 Seryl-tRNA synthetase signature 357 373 8.3E-34 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 YP_1188 803546559cebb42a88a145358ddb2182 1485 Gene3D G3DSA:1.20.1060.30 667 778 2.0E-137 T 14-10-2018 YP_1188 803546559cebb42a88a145358ddb2182 1485 Gene3D G3DSA:3.40.1140.10 1383 1468 2.8E-38 T 14-10-2018 YP_1188 803546559cebb42a88a145358ddb2182 1485 Gene3D G3DSA:1.20.58.850 620 830 2.0E-137 T 14-10-2018 YP_1188 803546559cebb42a88a145358ddb2182 1485 Pfam PF16330 MukB hinge domain 645 810 1.8E-73 T 14-10-2018 IPR032520 MukB, hinge domain YP_1188 803546559cebb42a88a145358ddb2182 1485 Gene3D G3DSA:3.40.1140.10 1 227 5.1E-101 T 14-10-2018 YP_1188 803546559cebb42a88a145358ddb2182 1485 Hamap MF_01800 Chromosome partition protein MukB [mukB]. 1 1471 11.061 T 14-10-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 YP_1188 803546559cebb42a88a145358ddb2182 1485 SUPERFAMILY SSF52540 21 1433 3.55E-6 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1188 803546559cebb42a88a145358ddb2182 1485 SUPERFAMILY SSF52540 22 224 3.36E-24 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1188 803546559cebb42a88a145358ddb2182 1485 Pfam PF04310 MukB N-terminal 2 227 1.8E-123 T 14-10-2018 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 YP_1188 803546559cebb42a88a145358ddb2182 1485 Gene3D G3DSA:1.20.58.850 581 852 2.0E-137 T 14-10-2018 YP_1188 803546559cebb42a88a145358ddb2182 1485 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1336 1424 1.1E-14 T 14-10-2018 YP_1188 803546559cebb42a88a145358ddb2182 1485 PIRSF PIRSF005246 1 1483 0.0 T 14-10-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 YP_3630 92d8af04ecb095805205de0df467b41a 400 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 31 386 1.7E-134 T 14-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_3630 92d8af04ecb095805205de0df467b41a 400 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 345 369 - T 14-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_3630 92d8af04ecb095805205de0df467b41a 400 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 29 396 42.061 T 14-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_3630 92d8af04ecb095805205de0df467b41a 400 Pfam PF01098 Cell cycle protein 33 387 4.0E-122 T 14-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_2323 670bc43e41fc261eb6f49edc08973467 165 Pfam PF00583 Acetyltransferase (GNAT) family 33 133 8.9E-12 T 14-10-2018 IPR000182 GNAT domain YP_2323 670bc43e41fc261eb6f49edc08973467 165 SUPERFAMILY SSF55729 1 160 1.05E-28 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_2323 670bc43e41fc261eb6f49edc08973467 165 Gene3D G3DSA:3.40.630.30 2 165 4.5E-46 T 14-10-2018 YP_3732 449987bab8083ed5588172ef1a434690 908 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 98 204 1.3E-19 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YP_3732 449987bab8083ed5588172ef1a434690 908 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 609 730 4.9E-35 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YP_3732 449987bab8083ed5588172ef1a434690 908 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 230 360 5.8E-23 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YP_3732 449987bab8083ed5588172ef1a434690 908 Gene3D G3DSA:1.20.1110.10 69 896 8.9E-289 T 14-10-2018 YP_3732 449987bab8083ed5588172ef1a434690 908 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 498 516 1.6E-19 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YP_3732 449987bab8083ed5588172ef1a434690 908 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 613 629 1.6E-19 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YP_3732 449987bab8083ed5588172ef1a434690 908 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 641 657 1.6E-19 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YP_3732 449987bab8083ed5588172ef1a434690 908 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 673 698 1.6E-19 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YP_3732 449987bab8083ed5588172ef1a434690 908 Gene3D G3DSA:2.70.150.10 33 241 8.9E-289 T 14-10-2018 YP_3732 449987bab8083ed5588172ef1a434690 908 Pfam PF00689 Cation transporting ATPase, C-terminus 726 897 1.7E-42 T 14-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 YP_3732 449987bab8083ed5588172ef1a434690 908 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 341 347 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 YP_3732 449987bab8083ed5588172ef1a434690 908 Gene3D G3DSA:3.40.1110.10 349 547 8.9E-289 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 YP_3732 449987bab8083ed5588172ef1a434690 908 Pfam PF00690 Cation transporter/ATPase, N-terminus 19 85 3.6E-21 T 14-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 YP_3732 449987bab8083ed5588172ef1a434690 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 562 572 1.3E-40 T 14-10-2018 YP_3732 449987bab8083ed5588172ef1a434690 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 665 677 1.3E-40 T 14-10-2018 YP_3732 449987bab8083ed5588172ef1a434690 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 540 551 1.3E-40 T 14-10-2018 YP_3732 449987bab8083ed5588172ef1a434690 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 176 190 1.3E-40 T 14-10-2018 YP_3732 449987bab8083ed5588172ef1a434690 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 641 660 1.3E-40 T 14-10-2018 YP_3732 449987bab8083ed5588172ef1a434690 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 339 353 1.3E-40 T 14-10-2018 YP_3732 449987bab8083ed5588172ef1a434690 908 Pfam PF00122 E1-E2 ATPase 126 319 1.7E-54 T 14-10-2018 YP_3732 449987bab8083ed5588172ef1a434690 908 SUPERFAMILY SSF81653 128 238 5.36E-30 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 YP_3732 449987bab8083ed5588172ef1a434690 908 SUPERFAMILY SSF81660 346 544 6.54E-46 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 YP_3732 449987bab8083ed5588172ef1a434690 908 SUPERFAMILY SSF56784 337 744 7.5E-62 T 14-10-2018 IPR036412 HAD-like superfamily YP_3732 449987bab8083ed5588172ef1a434690 908 SMART SM00831 18 91 7.0E-34 T 14-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 YP_3732 449987bab8083ed5588172ef1a434690 908 SUPERFAMILY SSF81665 18 901 5.23E-119 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 YP_3732 449987bab8083ed5588172ef1a434690 908 Pfam PF00702 haloacid dehalogenase-like hydrolase 335 655 7.8E-24 T 14-10-2018 YP_3732 449987bab8083ed5588172ef1a434690 908 Gene3D G3DSA:3.40.50.1000 336 686 8.9E-289 T 14-10-2018 IPR023214 HAD superfamily YP_0279 9f1a7b9b74d6ed4c5d96abdf978914b0 308 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0279 9f1a7b9b74d6ed4c5d96abdf978914b0 308 Gene3D G3DSA:3.40.50.300 1 235 3.3E-66 T 14-10-2018 YP_0279 9f1a7b9b74d6ed4c5d96abdf978914b0 308 Pfam PF00005 ABC transporter 21 165 1.9E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0279 9f1a7b9b74d6ed4c5d96abdf978914b0 308 SUPERFAMILY SSF52540 3 234 1.63E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0279 9f1a7b9b74d6ed4c5d96abdf978914b0 308 SMART SM00382 30 213 1.4E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1492 197d8f3b31401ead24727bc45e8a0cf4 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_1492 197d8f3b31401ead24727bc45e8a0cf4 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_1492 197d8f3b31401ead24727bc45e8a0cf4 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1492 197d8f3b31401ead24727bc45e8a0cf4 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_1492 197d8f3b31401ead24727bc45e8a0cf4 340 SUPERFAMILY SSF46689 12 87 1.73E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_4001 c6a41d0375e6e436bfce55f58e17c6b7 296 SUPERFAMILY SSF56784 28 295 1.36E-77 T 14-10-2018 IPR036412 HAD-like superfamily YP_4001 c6a41d0375e6e436bfce55f58e17c6b7 296 Pfam PF08282 haloacid dehalogenase-like hydrolase 33 291 1.2E-68 T 14-10-2018 YP_4001 c6a41d0375e6e436bfce55f58e17c6b7 296 Gene3D G3DSA:3.40.50.1000 32 292 1.3E-94 T 14-10-2018 IPR023214 HAD superfamily YP_4001 c6a41d0375e6e436bfce55f58e17c6b7 296 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 32 291 1.7E-67 T 14-10-2018 IPR000150 Cof family GO:0016787 YP_4001 c6a41d0375e6e436bfce55f58e17c6b7 296 Gene3D G3DSA:3.30.1240.10 114 220 1.3E-94 T 14-10-2018 YP_4001 c6a41d0375e6e436bfce55f58e17c6b7 296 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 32 264 6.5E-28 T 14-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 YP_4001 c6a41d0375e6e436bfce55f58e17c6b7 296 ProSitePatterns PS01228 Hypothetical cof family signature 1. 32 43 - T 14-10-2018 YP_0134 06dc8a80f190855b1b1a7a7d03d50f2a 75 Pfam PF04023 FeoA domain 8 63 3.3E-6 T 14-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 YP_0134 06dc8a80f190855b1b1a7a7d03d50f2a 75 SMART SM00899 1 72 4.1E-7 T 14-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 YP_0134 06dc8a80f190855b1b1a7a7d03d50f2a 75 Gene3D G3DSA:2.30.30.90 1 75 7.1E-28 T 14-10-2018 IPR038157 Ferrous iron transporter, core domain YP_0134 06dc8a80f190855b1b1a7a7d03d50f2a 75 SUPERFAMILY SSF50037 6 70 3.36E-14 T 14-10-2018 IPR008988 Transcriptional repressor, C-terminal YP_4005 f05b9d36a29d5b13df96e544916a916b 462 SMART SM00382 159 361 6.3E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_4005 f05b9d36a29d5b13df96e544916a916b 462 ProSitePatterns PS01008 DnaA protein signature. 420 439 - T 14-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 YP_4005 f05b9d36a29d5b13df96e544916a916b 462 SMART SM00760 370 439 6.1E-45 T 14-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 YP_4005 f05b9d36a29d5b13df96e544916a916b 462 Pfam PF11638 DnaA N-terminal domain 4 64 2.7E-20 T 14-10-2018 IPR024633 DnaA N-terminal domain YP_4005 f05b9d36a29d5b13df96e544916a916b 462 Pfam PF00308 Bacterial dnaA protein 128 344 5.7E-99 T 14-10-2018 IPR013317 Chromosomal replication initiator protein DnaA YP_4005 f05b9d36a29d5b13df96e544916a916b 462 SUPERFAMILY SSF52540 127 338 7.92E-45 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_4005 f05b9d36a29d5b13df96e544916a916b 462 Gene3D G3DSA:3.40.50.300 113 291 1.7E-51 T 14-10-2018 YP_4005 f05b9d36a29d5b13df96e544916a916b 462 Gene3D G3DSA:3.30.300.180 2 108 5.6E-41 T 14-10-2018 IPR038454 DnaA, N-terminal domain superfamily YP_4005 f05b9d36a29d5b13df96e544916a916b 462 Gene3D G3DSA:1.10.8.60 293 363 1.1E-23 T 14-10-2018 YP_4005 f05b9d36a29d5b13df96e544916a916b 462 SUPERFAMILY SSF48295 358 461 3.4E-38 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 YP_4005 f05b9d36a29d5b13df96e544916a916b 462 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 461 34.412 T 14-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 YP_4005 f05b9d36a29d5b13df96e544916a916b 462 Gene3D G3DSA:1.10.1750.10 369 462 7.2E-40 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 YP_4005 f05b9d36a29d5b13df96e544916a916b 462 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 258 285 1.2E-54 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like YP_4005 f05b9d36a29d5b13df96e544916a916b 462 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 192 206 1.2E-54 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like YP_4005 f05b9d36a29d5b13df96e544916a916b 462 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 420 439 1.2E-54 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like YP_4005 f05b9d36a29d5b13df96e544916a916b 462 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 224 238 1.2E-54 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like YP_4005 f05b9d36a29d5b13df96e544916a916b 462 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 160 180 1.2E-54 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like YP_4005 f05b9d36a29d5b13df96e544916a916b 462 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 371 439 1.0E-32 T 14-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 YP_4005 f05b9d36a29d5b13df96e544916a916b 462 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 6 460 1.9E-186 T 14-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 YP_1049 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 Hamap MF_01151 Protein GrpE [grpE]. 4 189 21.315 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 YP_1049 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 PRINTS PR00773 GrpE protein signature 168 187 1.9E-26 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 YP_1049 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 PRINTS PR00773 GrpE protein signature 86 101 1.9E-26 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 YP_1049 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 PRINTS PR00773 GrpE protein signature 58 74 1.9E-26 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 YP_1049 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 PRINTS PR00773 GrpE protein signature 141 156 1.9E-26 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 YP_1049 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 ProSitePatterns PS01071 grpE protein signature. 144 187 - T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 YP_1049 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 SUPERFAMILY SSF51064 134 190 1.57E-18 T 14-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 YP_1049 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 Gene3D G3DSA:2.30.22.10 133 189 1.1E-25 T 14-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 YP_1049 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 SUPERFAMILY SSF58014 44 133 3.01E-26 T 14-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 YP_1049 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 Pfam PF01025 GrpE 16 189 4.7E-47 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 YP_1049 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 Gene3D G3DSA:3.90.20.20 29 132 1.1E-33 T 14-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 YP_1747 bd7bf8930dab033b662994f9233a31d0 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 275 1.1E-15 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1747 bd7bf8930dab033b662994f9233a31d0 296 SUPERFAMILY SSF161098 50 273 1.1E-58 T 14-10-2018 IPR035906 MetI-like superfamily YP_1747 bd7bf8930dab033b662994f9233a31d0 296 SUPERFAMILY SSF160964 4 39 6.41E-5 T 14-10-2018 YP_1747 bd7bf8930dab033b662994f9233a31d0 296 Gene3D G3DSA:1.10.3720.10 46 284 1.2E-66 T 14-10-2018 IPR035906 MetI-like superfamily YP_2447 3c71b6f56cef2cd3fc0b83175871712b 334 Gene3D G3DSA:3.40.190.100 113 252 2.3E-139 T 14-10-2018 YP_2447 3c71b6f56cef2cd3fc0b83175871712b 334 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 31 311 1.0E-52 T 14-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 YP_2447 3c71b6f56cef2cd3fc0b83175871712b 334 Gene3D G3DSA:3.40.190.10 25 324 2.3E-139 T 14-10-2018 YP_2447 3c71b6f56cef2cd3fc0b83175871712b 334 SUPERFAMILY SSF53850 24 324 9.77E-94 T 14-10-2018 YP_0799 c3068fda8dc1e0af4926ffe0b3c9344b 395 Gene3D G3DSA:2.40.50.100 65 209 4.5E-110 T 14-10-2018 YP_0799 c3068fda8dc1e0af4926ffe0b3c9344b 395 Pfam PF00529 HlyD membrane-fusion protein of T1SS 295 361 5.8E-11 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YP_0799 c3068fda8dc1e0af4926ffe0b3c9344b 395 SUPERFAMILY SSF111369 53 301 1.96E-86 T 14-10-2018 YP_0799 c3068fda8dc1e0af4926ffe0b3c9344b 395 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 294 1.4E-9 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_0799 c3068fda8dc1e0af4926ffe0b3c9344b 395 Gene3D G3DSA:1.10.287.470 100 173 4.5E-110 T 14-10-2018 YP_0799 c3068fda8dc1e0af4926ffe0b3c9344b 395 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 377 9.8E-80 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YP_0799 c3068fda8dc1e0af4926ffe0b3c9344b 395 Gene3D G3DSA:2.40.30.170 53 304 4.5E-110 T 14-10-2018 YP_0799 c3068fda8dc1e0af4926ffe0b3c9344b 395 Gene3D G3DSA:2.40.420.20 305 374 4.5E-110 T 14-10-2018 YP_0945 9caff5f8cb71396431bd31705c43cdf5 253 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 23 253 5.2E-107 T 14-10-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE YP_0945 9caff5f8cb71396431bd31705c43cdf5 253 Gene3D G3DSA:3.40.50.300 19 246 2.1E-59 T 14-10-2018 YP_0945 9caff5f8cb71396431bd31705c43cdf5 253 SMART SM00382 47 232 5.0E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0945 9caff5f8cb71396431bd31705c43cdf5 253 Pfam PF00005 ABC transporter 38 182 1.2E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0945 9caff5f8cb71396431bd31705c43cdf5 253 SUPERFAMILY SSF52540 22 237 6.99E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3321 3d7c1fd3bcb511ced6acb26c15fb183c 239 SUPERFAMILY SSF52172 2 124 1.17E-35 T 14-10-2018 IPR011006 CheY-like superfamily YP_3321 3d7c1fd3bcb511ced6acb26c15fb183c 239 Gene3D G3DSA:3.40.50.2300 1 131 7.4E-34 T 14-10-2018 YP_3321 3d7c1fd3bcb511ced6acb26c15fb183c 239 SMART SM00448 3 115 1.6E-34 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_3321 3d7c1fd3bcb511ced6acb26c15fb183c 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 232 2.2E-22 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_3321 3d7c1fd3bcb511ced6acb26c15fb183c 239 SMART SM00862 156 232 1.8E-19 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_3321 3d7c1fd3bcb511ced6acb26c15fb183c 239 Gene3D G3DSA:1.10.10.10 132 237 5.0E-31 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3321 3d7c1fd3bcb511ced6acb26c15fb183c 239 Pfam PF00072 Response regulator receiver domain 5 115 2.7E-25 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_3321 3d7c1fd3bcb511ced6acb26c15fb183c 239 SUPERFAMILY SSF46894 135 233 1.79E-25 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_1339 1de545df46b5ae564bba8ad01b8b91c9 101 SUPERFAMILY SSF53098 3 73 4.93E-7 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1339 1de545df46b5ae564bba8ad01b8b91c9 101 Pfam PF13610 DDE domain 3 91 6.7E-30 T 14-10-2018 IPR032874 DDE domain YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 Gene3D G3DSA:3.40.120.10 3 148 7.9E-53 T 14-10-2018 YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 Gene3D G3DSA:3.40.120.10 170 252 2.0E-27 T 14-10-2018 YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 168 187 2.5E-28 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 2.5E-28 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 2.5E-28 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 207 220 2.5E-28 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 14-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 Gene3D G3DSA:3.40.120.10 253 377 2.0E-27 T 14-10-2018 YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 Gene3D G3DSA:3.30.310.50 379 460 1.3E-24 T 14-10-2018 YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 SUPERFAMILY SSF53738 151 259 3.37E-26 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 263 374 3.7E-21 T 14-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 SUPERFAMILY SSF53738 3 175 6.67E-39 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 SUPERFAMILY SSF53738 261 371 1.96E-25 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 SUPERFAMILY SSF55957 377 459 6.8E-17 T 14-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 152 256 3.2E-17 T 14-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 383 454 4.4E-8 T 14-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2298 57cd7aecaf04f24746a33b913c833fe8 462 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 130 3.5E-34 T 14-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2767 1047eaca77205968cffd1900de9452a5 254 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 7 242 2.1E-94 T 14-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_2767 1047eaca77205968cffd1900de9452a5 254 SMART SM00479 7 184 7.4E-52 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III YP_2767 1047eaca77205968cffd1900de9452a5 254 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 6 225 2.0E-89 T 14-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_2767 1047eaca77205968cffd1900de9452a5 254 Pfam PF00929 Exonuclease 9 175 2.7E-40 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III YP_2767 1047eaca77205968cffd1900de9452a5 254 Gene3D G3DSA:3.30.420.10 3 190 1.1E-60 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_2767 1047eaca77205968cffd1900de9452a5 254 SUPERFAMILY SSF53098 3 185 1.34E-55 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_2767 1047eaca77205968cffd1900de9452a5 254 Gene3D G3DSA:3.20.20.140 208 254 8.5E-8 T 14-10-2018 YP_3369 6fbbc0fe54106445b2dea6bb7f41b417 453 Gene3D G3DSA:1.20.1250.20 247 450 1.5E-46 T 14-10-2018 YP_3369 6fbbc0fe54106445b2dea6bb7f41b417 453 Pfam PF07690 Major Facilitator Superfamily 46 406 2.2E-49 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_3369 6fbbc0fe54106445b2dea6bb7f41b417 453 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 46 423 8.2E-143 T 14-10-2018 YP_3369 6fbbc0fe54106445b2dea6bb7f41b417 453 PIRSF PIRSF002808 16 453 1.6E-142 T 14-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 YP_3369 6fbbc0fe54106445b2dea6bb7f41b417 453 Gene3D G3DSA:1.20.1250.20 29 233 1.2E-51 T 14-10-2018 YP_3369 6fbbc0fe54106445b2dea6bb7f41b417 453 SUPERFAMILY SSF103473 27 444 1.44E-81 T 14-10-2018 IPR036259 MFS transporter superfamily YP_0749 4c622094a3a1b8dc7c9c6f47f5e0406e 176 Gene3D G3DSA:3.40.50.960 21 176 9.9E-64 T 14-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YP_0749 4c622094a3a1b8dc7c9c6f47f5e0406e 176 SUPERFAMILY SSF52121 23 174 5.49E-60 T 14-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YP_0749 4c622094a3a1b8dc7c9c6f47f5e0406e 176 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 28 174 31.894 T 14-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YP_0749 4c622094a3a1b8dc7c9c6f47f5e0406e 176 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 34 170 1.7E-58 T 14-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YP_0749 4c622094a3a1b8dc7c9c6f47f5e0406e 176 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 33 171 1.7E-55 T 14-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YP_2696 78644807edc4296808d392c191e3a9f0 309 SUPERFAMILY SSF56042 133 304 8.37E-64 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YP_2696 78644807edc4296808d392c191e3a9f0 309 Pfam PF00586 AIR synthase related protein, N-terminal domain 28 126 2.6E-16 T 14-10-2018 IPR016188 PurM-like, N-terminal domain YP_2696 78644807edc4296808d392c191e3a9f0 309 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 1 307 41.005 T 14-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YP_2696 78644807edc4296808d392c191e3a9f0 309 Gene3D G3DSA:3.30.1330.10 1 132 1.2E-60 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YP_2696 78644807edc4296808d392c191e3a9f0 309 Pfam PF02769 AIR synthase related protein, C-terminal domain 139 302 1.3E-37 T 14-10-2018 IPR010918 PurM-like, C-terminal domain YP_2696 78644807edc4296808d392c191e3a9f0 309 SUPERFAMILY SSF55326 2 132 4.64E-44 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YP_2696 78644807edc4296808d392c191e3a9f0 309 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 1 296 1.5E-140 T 14-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YP_2696 78644807edc4296808d392c191e3a9f0 309 Gene3D G3DSA:3.90.650.10 133 308 1.1E-70 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YP_1221 c617b7a916cd54420a615b6801979b18 574 SUPERFAMILY SSF90123 7 327 1.29E-40 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_1221 c617b7a916cd54420a615b6801979b18 574 SUPERFAMILY SSF52540 335 572 1.96E-71 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1221 c617b7a916cd54420a615b6801979b18 574 Pfam PF00664 ABC transporter transmembrane region 63 287 4.4E-9 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YP_1221 c617b7a916cd54420a615b6801979b18 574 ProSitePatterns PS00211 ABC transporters family signature. 476 490 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1221 c617b7a916cd54420a615b6801979b18 574 SMART SM00382 365 550 4.5E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1221 c617b7a916cd54420a615b6801979b18 574 Pfam PF00005 ABC transporter 356 503 7.0E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1221 c617b7a916cd54420a615b6801979b18 574 Gene3D G3DSA:3.40.50.300 330 574 8.3E-78 T 14-10-2018 YP_1221 c617b7a916cd54420a615b6801979b18 574 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 8 534 2.7E-156 T 14-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 YP_1221 c617b7a916cd54420a615b6801979b18 574 Gene3D G3DSA:1.20.1560.10 3 321 1.1E-26 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_0499 93791906ee0776f0ae21141579c1ed6c 595 Gene3D G3DSA:3.40.30.10 466 591 1.9E-35 T 14-10-2018 YP_0499 93791906ee0776f0ae21141579c1ed6c 595 Pfam PF11412 Disulphide bond corrector protein DsbC 39 150 1.7E-35 T 14-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain YP_0499 93791906ee0776f0ae21141579c1ed6c 595 ProSitePatterns PS00194 Thioredoxin family active site. 499 517 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 YP_0499 93791906ee0776f0ae21141579c1ed6c 595 Pfam PF13899 Thioredoxin-like 491 563 1.3E-12 T 14-10-2018 YP_0499 93791906ee0776f0ae21141579c1ed6c 595 SUPERFAMILY SSF52833 476 589 9.55E-25 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_0499 93791906ee0776f0ae21141579c1ed6c 595 SUPERFAMILY SSF74863 38 153 5.62E-42 T 14-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily YP_0499 93791906ee0776f0ae21141579c1ed6c 595 Gene3D G3DSA:2.60.40.1250 31 167 1.9E-45 T 14-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily YP_0499 93791906ee0776f0ae21141579c1ed6c 595 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 198 403 1.8E-20 T 14-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 YP_0499 93791906ee0776f0ae21141579c1ed6c 595 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 591 40.965 T 14-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 YP_3702 b3d8b2fea2a93b15dd9425d0ddba1e31 325 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 10 293 4.2E-97 T 14-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 YP_3702 b3d8b2fea2a93b15dd9425d0ddba1e31 325 Gene3D G3DSA:3.40.50.11270 20 105 2.5E-110 T 14-10-2018 YP_3702 b3d8b2fea2a93b15dd9425d0ddba1e31 325 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 9 295 36.399 T 14-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 YP_3702 b3d8b2fea2a93b15dd9425d0ddba1e31 325 Gene3D G3DSA:3.40.1010.20 106 205 2.5E-110 T 14-10-2018 YP_3702 b3d8b2fea2a93b15dd9425d0ddba1e31 325 Pfam PF02401 LytB protein 11 291 1.7E-91 T 14-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 YP_3702 b3d8b2fea2a93b15dd9425d0ddba1e31 325 Gene3D G3DSA:3.40.1010.20 14 291 2.5E-110 T 14-10-2018 YP_2423 9df4b95254e50a22b2c95c85bb92c320 170 Pfam PF03918 Cytochrome C biogenesis protein 7 145 2.7E-56 T 14-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family YP_2423 9df4b95254e50a22b2c95c85bb92c320 170 Gene3D G3DSA:1.10.8.640 18 103 8.2E-38 T 14-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily YP_2412 613a49b9cbcdaf79112eba928228f468 362 Pfam PF01264 Chorismate synthase 11 346 3.3E-143 T 14-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YP_2412 613a49b9cbcdaf79112eba928228f468 362 ProSitePatterns PS00787 Chorismate synthase signature 1. 17 32 - T 14-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YP_2412 613a49b9cbcdaf79112eba928228f468 362 ProSitePatterns PS00789 Chorismate synthase signature 3. 320 336 - T 14-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YP_2412 613a49b9cbcdaf79112eba928228f468 362 TIGRFAM TIGR00033 aroC: chorismate synthase 11 351 1.9E-140 T 14-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YP_2412 613a49b9cbcdaf79112eba928228f468 362 SUPERFAMILY SSF103263 5 352 4.58E-149 T 14-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YP_2412 613a49b9cbcdaf79112eba928228f468 362 Hamap MF_00300 Chorismate synthase [aroC]. 11 355 37.844 T 14-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YP_2412 613a49b9cbcdaf79112eba928228f468 362 Gene3D G3DSA:3.60.150.10 2 361 9.5E-159 T 14-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YP_2412 613a49b9cbcdaf79112eba928228f468 362 ProSitePatterns PS00788 Chorismate synthase signature 2. 125 141 - T 14-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YP_2412 613a49b9cbcdaf79112eba928228f468 362 PIRSF PIRSF001456 4 359 3.0E-142 T 14-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YP_1120 3f44445bc5256dc572b4cfa1d65de8f0 84 Gene3D G3DSA:2.40.50.140 14 82 9.0E-32 T 14-10-2018 YP_1120 3f44445bc5256dc572b4cfa1d65de8f0 84 ProSitePatterns PS00352 'Cold-shock' domain signature. 32 51 - T 14-10-2018 IPR019844 Cold-shock conserved site YP_1120 3f44445bc5256dc572b4cfa1d65de8f0 84 PIRSF PIRSF002599 14 84 9.1E-26 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 YP_1120 3f44445bc5256dc572b4cfa1d65de8f0 84 Pfam PF00313 'Cold-shock' DNA-binding domain 20 83 5.3E-33 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1120 3f44445bc5256dc572b4cfa1d65de8f0 84 SMART SM00357 20 84 6.9E-33 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 YP_1120 3f44445bc5256dc572b4cfa1d65de8f0 84 PRINTS PR00050 Cold shock protein signature 42 51 1.9E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1120 3f44445bc5256dc572b4cfa1d65de8f0 84 PRINTS PR00050 Cold shock protein signature 21 36 1.9E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1120 3f44445bc5256dc572b4cfa1d65de8f0 84 PRINTS PR00050 Cold shock protein signature 57 75 1.9E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1120 3f44445bc5256dc572b4cfa1d65de8f0 84 SUPERFAMILY SSF50249 15 83 6.48E-26 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_0981 7d56ff2b452d4b69742d6c83554ac8f5 303 Gene3D G3DSA:1.10.10.10 6 91 5.1E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0981 7d56ff2b452d4b69742d6c83554ac8f5 303 Gene3D G3DSA:3.40.190.290 94 297 4.9E-60 T 14-10-2018 YP_0981 7d56ff2b452d4b69742d6c83554ac8f5 303 SUPERFAMILY SSF46785 7 114 2.45E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0981 7d56ff2b452d4b69742d6c83554ac8f5 303 SUPERFAMILY SSF53850 92 299 6.52E-46 T 14-10-2018 YP_0981 7d56ff2b452d4b69742d6c83554ac8f5 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.4E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_0981 7d56ff2b452d4b69742d6c83554ac8f5 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.4E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_0981 7d56ff2b452d4b69742d6c83554ac8f5 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.4E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_0981 7d56ff2b452d4b69742d6c83554ac8f5 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 1.6E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_0981 7d56ff2b452d4b69742d6c83554ac8f5 303 Pfam PF03466 LysR substrate binding domain 92 296 1.7E-42 T 14-10-2018 IPR005119 LysR, substrate-binding YP_0040 07b16ad13a23144941e6bd990763d9f7 91 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 2.1E-28 T 14-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_0040 07b16ad13a23144941e6bd990763d9f7 91 SUPERFAMILY SSF63562 1 78 3.49E-25 T 14-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 YP_0040 07b16ad13a23144941e6bd990763d9f7 91 Pfam PF01192 RNA polymerase Rpb6 10 60 8.2E-17 T 14-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 YP_0040 07b16ad13a23144941e6bd990763d9f7 91 SMART SM01409 8 61 1.0E-16 T 14-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 YP_0040 07b16ad13a23144941e6bd990763d9f7 91 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 16.134 T 14-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_0040 07b16ad13a23144941e6bd990763d9f7 91 Gene3D G3DSA:3.90.940.10 1 91 1.9E-30 T 14-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 YP_0577 4fb551aaa0853fb8d0ad4b325d027ca3 482 SUPERFAMILY SSF56601 28 479 2.54E-104 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YP_0577 4fb551aaa0853fb8d0ad4b325d027ca3 482 Gene3D G3DSA:3.40.710.10 249 482 8.6E-68 T 14-10-2018 YP_0577 4fb551aaa0853fb8d0ad4b325d027ca3 482 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 51 452 9.7E-170 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_0577 4fb551aaa0853fb8d0ad4b325d027ca3 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 350 364 8.4E-39 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_0577 4fb551aaa0853fb8d0ad4b325d027ca3 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 365 379 8.4E-39 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_0577 4fb551aaa0853fb8d0ad4b325d027ca3 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 429 442 8.4E-39 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_0577 4fb551aaa0853fb8d0ad4b325d027ca3 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 291 313 8.4E-39 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_0577 4fb551aaa0853fb8d0ad4b325d027ca3 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 63 82 8.4E-39 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_0577 4fb551aaa0853fb8d0ad4b325d027ca3 482 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 26 473 3.0E-165 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_0577 4fb551aaa0853fb8d0ad4b325d027ca3 482 Gene3D G3DSA:3.50.80.20 87 186 6.0E-23 T 14-10-2018 YP_2522 8f65d371717f918390b7e9b551528998 226 Hamap MF_00104 Ribonuclease 3 [rnc]. 9 220 29.607 T 14-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 YP_2522 8f65d371717f918390b7e9b551528998 226 ProSitePatterns PS00517 Ribonuclease III family signature. 38 46 - T 14-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 YP_2522 8f65d371717f918390b7e9b551528998 226 Pfam PF14622 Ribonuclease-III-like 20 142 2.2E-33 T 14-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 YP_2522 8f65d371717f918390b7e9b551528998 226 SMART SM00535 21 149 8.4E-55 T 14-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 YP_2522 8f65d371717f918390b7e9b551528998 226 Gene3D G3DSA:1.10.1520.10 4 147 1.2E-43 T 14-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 YP_2522 8f65d371717f918390b7e9b551528998 226 Gene3D G3DSA:3.30.160.20 154 224 2.7E-20 T 14-10-2018 YP_2522 8f65d371717f918390b7e9b551528998 226 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 9 223 1.0E-73 T 14-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 YP_2522 8f65d371717f918390b7e9b551528998 226 SUPERFAMILY SSF54768 109 223 2.2E-27 T 14-10-2018 YP_2522 8f65d371717f918390b7e9b551528998 226 Pfam PF00035 Double-stranded RNA binding motif 156 223 3.0E-15 T 14-10-2018 IPR014720 Double-stranded RNA-binding domain YP_2522 8f65d371717f918390b7e9b551528998 226 SMART SM00358 156 224 1.5E-23 T 14-10-2018 IPR014720 Double-stranded RNA-binding domain YP_2522 8f65d371717f918390b7e9b551528998 226 SUPERFAMILY SSF69065 5 159 4.19E-49 T 14-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 YP_3303 fbefc36e601cdbdc481e55854ae10719 662 SUPERFAMILY SSF51445 131 567 4.53E-122 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_3303 fbefc36e601cdbdc481e55854ae10719 662 SUPERFAMILY SSF51011 576 629 2.09E-5 T 14-10-2018 YP_3303 fbefc36e601cdbdc481e55854ae10719 662 Gene3D G3DSA:2.60.40.1180 575 660 8.0E-35 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta YP_3303 fbefc36e601cdbdc481e55854ae10719 662 Pfam PF00128 Alpha amylase, catalytic domain 186 291 1.6E-4 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YP_3303 fbefc36e601cdbdc481e55854ae10719 662 SUPERFAMILY SSF81296 7 144 6.44E-42 T 14-10-2018 IPR014756 Immunoglobulin E-set YP_3303 fbefc36e601cdbdc481e55854ae10719 662 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 13 95 9.5E-19 T 14-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 YP_3303 fbefc36e601cdbdc481e55854ae10719 662 Gene3D G3DSA:3.20.20.80 134 574 5.8E-171 T 14-10-2018 YP_3303 fbefc36e601cdbdc481e55854ae10719 662 Gene3D G3DSA:2.60.40.10 2 133 1.6E-44 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3303 fbefc36e601cdbdc481e55854ae10719 662 Hamap MF_01248 Glycogen debranching enzyme [glgX]. 3 660 73.298 T 14-10-2018 IPR022844 Glycogen debranching enzyme, bacterial GO:0004553|GO:0005977 YP_3303 fbefc36e601cdbdc481e55854ae10719 662 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 7 638 6.0E-270 T 14-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 YP_3303 fbefc36e601cdbdc481e55854ae10719 662 SMART SM00642 151 560 4.1E-7 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YP_1986 6365ec06089251a6a6597587a6e7952b 493 Gene3D G3DSA:3.30.870.10 310 490 5.8E-31 T 14-10-2018 YP_1986 6365ec06089251a6a6597587a6e7952b 493 SMART SM00155 406 433 7.3E-5 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 YP_1986 6365ec06089251a6a6597587a6e7952b 493 SMART SM00155 226 253 5.2E-4 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 YP_1986 6365ec06089251a6a6597587a6e7952b 493 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 13 493 1.8E-209 T 14-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 YP_1986 6365ec06089251a6a6597587a6e7952b 493 Pfam PF13091 PLD-like domain 142 251 4.4E-12 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 YP_1986 6365ec06089251a6a6597587a6e7952b 493 Pfam PF13091 PLD-like domain 338 455 1.1E-23 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 YP_1986 6365ec06089251a6a6597587a6e7952b 493 SUPERFAMILY SSF56024 74 322 3.4E-48 T 14-10-2018 YP_1986 6365ec06089251a6a6597587a6e7952b 493 Pfam PF13396 Phospholipase_D-nuclease N-terminal 30 66 4.1E-7 T 14-10-2018 IPR027379 Cardiolipin synthase N-terminal YP_1986 6365ec06089251a6a6597587a6e7952b 493 SUPERFAMILY SSF56024 280 480 9.87E-51 T 14-10-2018 YP_1986 6365ec06089251a6a6597587a6e7952b 493 Gene3D G3DSA:3.30.870.10 119 309 1.1E-32 T 14-10-2018 YP_1986 6365ec06089251a6a6597587a6e7952b 493 Hamap MF_00190 Cardiolipin synthase A [clsA]. 9 493 52.669 T 14-10-2018 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 YP_0140 e286e4b1a481862130239884ae54da8e 293 SUPERFAMILY SSF64397 4 233 6.93E-77 T 14-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 YP_0140 e286e4b1a481862130239884ae54da8e 293 SUPERFAMILY SSF118352 226 283 1.7E-19 T 14-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 YP_0140 e286e4b1a481862130239884ae54da8e 293 PIRSF PIRSF005261 1 285 3.6E-74 T 14-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 YP_0140 e286e4b1a481862130239884ae54da8e 293 Pfam PF01430 Hsp33 protein 5 274 6.5E-87 T 14-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 YP_0140 e286e4b1a481862130239884ae54da8e 293 Gene3D G3DSA:3.55.30.10 1 177 7.5E-66 T 14-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 YP_0140 e286e4b1a481862130239884ae54da8e 293 Hamap MF_00117 33 kDa chaperonin [hslO]. 4 285 32.367 T 14-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 YP_0140 e286e4b1a481862130239884ae54da8e 293 Gene3D G3DSA:1.10.287.480 178 226 1.2E-23 T 14-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily YP_0140 e286e4b1a481862130239884ae54da8e 293 Gene3D G3DSA:3.90.1280.10 227 286 4.4E-23 T 14-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 SMART SM00958 228 358 8.9E-85 T 14-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 SMART SM00957 6 402 0.0 T 14-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 SUPERFAMILY SSF52540 416 618 1.06E-56 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 PRINTS PR00906 SecA protein signature 101 115 1.4E-73 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 PRINTS PR00906 SecA protein signature 63 87 1.4E-73 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 PRINTS PR00906 SecA protein signature 170 190 1.4E-73 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 PRINTS PR00906 SecA protein signature 339 361 1.4E-73 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 PRINTS PR00906 SecA protein signature 376 393 1.4E-73 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 PRINTS PR00906 SecA protein signature 117 127 1.4E-73 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 PRINTS PR00906 SecA protein signature 413 426 1.4E-73 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 Gene3D G3DSA:3.40.50.300 417 620 4.3E-87 T 14-10-2018 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 19.941 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 SUPERFAMILY SSF81767 227 368 6.8E-45 T 14-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 Pfam PF01043 SecA preprotein cross-linking domain 232 358 3.2E-39 T 14-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 Pfam PF02810 SEC-C motif 884 902 1.1E-10 T 14-10-2018 IPR004027 SEC-C motif YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 Pfam PF07517 SecA DEAD-like domain 7 402 1.0E-131 T 14-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 SUPERFAMILY SSF52540 5 415 1.93E-82 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 817 0.0 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 Pfam PF07516 SecA Wing and Scaffold domain 617 830 5.0E-69 T 14-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 Gene3D G3DSA:1.10.3060.10 621 833 4.5E-82 T 14-10-2018 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 Gene3D G3DSA:3.90.1440.10 229 368 5.4E-176 T 14-10-2018 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 Gene3D G3DSA:3.40.50.300 22 415 5.4E-176 T 14-10-2018 YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 SUPERFAMILY SSF81886 620 892 3.66E-84 T 14-10-2018 IPR036266 SecA, Wing/Scaffold superfamily YP_3620 4bee0ef5ead1da96da306619c182f5dc 904 ProSitePatterns PS01312 SecA family signature. 500 515 - T 14-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 YP_0699 ef6d45ce5376bdf7193f6a01a9a2a61f 360 Pfam PF02424 ApbE family 53 329 5.3E-85 T 14-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 YP_0699 ef6d45ce5376bdf7193f6a01a9a2a61f 360 PIRSF PIRSF006268 24 357 2.7E-92 T 14-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 YP_0699 ef6d45ce5376bdf7193f6a01a9a2a61f 360 Gene3D G3DSA:3.10.520.20 41 360 3.3E-115 T 14-10-2018 YP_0699 ef6d45ce5376bdf7193f6a01a9a2a61f 360 SUPERFAMILY SSF143631 45 356 2.28E-103 T 14-10-2018 IPR003374 ApbE-like superfamily YP_2792 1a7349ff74bd00cf878cfe39953ef0cb 198 Hamap MF_00052_B Ribonuclease HII [rnhB]. 12 191 39.211 T 14-10-2018 IPR022898 Ribonuclease HII GO:0004523 YP_2792 1a7349ff74bd00cf878cfe39953ef0cb 198 SUPERFAMILY SSF53098 5 196 5.01E-69 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_2792 1a7349ff74bd00cf878cfe39953ef0cb 198 Gene3D G3DSA:3.30.420.10 1 197 8.3E-74 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_2792 1a7349ff74bd00cf878cfe39953ef0cb 198 Pfam PF01351 Ribonuclease HII 14 189 1.2E-38 T 14-10-2018 IPR024567 Ribonuclease HII/HIII domain YP_0564 22dd3eaccc9d9b876b105bfdcdd2711c 460 Pfam PF01225 Mur ligase family, catalytic domain 2 98 1.6E-18 T 14-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 YP_0564 22dd3eaccc9d9b876b105bfdcdd2711c 460 Gene3D G3DSA:3.40.1190.10 91 313 2.9E-51 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YP_0564 22dd3eaccc9d9b876b105bfdcdd2711c 460 Gene3D G3DSA:3.40.50.720 1 90 5.3E-35 T 14-10-2018 YP_0564 22dd3eaccc9d9b876b105bfdcdd2711c 460 SUPERFAMILY SSF51984 1 90 3.79E-23 T 14-10-2018 YP_0564 22dd3eaccc9d9b876b105bfdcdd2711c 460 SUPERFAMILY SSF53244 312 449 9.03E-36 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YP_0564 22dd3eaccc9d9b876b105bfdcdd2711c 460 Pfam PF08245 Mur ligase middle domain 108 291 1.2E-18 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 YP_0564 22dd3eaccc9d9b876b105bfdcdd2711c 460 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 449 3.3E-258 T 14-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 YP_0564 22dd3eaccc9d9b876b105bfdcdd2711c 460 SUPERFAMILY SSF53623 95 308 1.83E-48 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YP_0564 22dd3eaccc9d9b876b105bfdcdd2711c 460 Gene3D G3DSA:3.90.190.20 314 451 1.4E-29 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YP_0564 22dd3eaccc9d9b876b105bfdcdd2711c 460 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 450 58.928 T 14-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 YP_0564 22dd3eaccc9d9b876b105bfdcdd2711c 460 Pfam PF02875 Mur ligase family, glutamate ligase domain 312 360 6.9E-9 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 YP_1256 f812cf05bd062a57e51b2db6c5bbc976 252 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 12 250 2.9E-87 T 14-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 YP_1256 f812cf05bd062a57e51b2db6c5bbc976 252 SMART SM00079 31 252 5.1E-4 T 14-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 YP_1256 f812cf05bd062a57e51b2db6c5bbc976 252 Gene3D G3DSA:3.40.190.10 35 249 7.5E-84 T 14-10-2018 YP_1256 f812cf05bd062a57e51b2db6c5bbc976 252 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 32 251 4.6E-71 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_1256 f812cf05bd062a57e51b2db6c5bbc976 252 SMART SM00062 31 251 2.5E-84 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_1256 f812cf05bd062a57e51b2db6c5bbc976 252 SUPERFAMILY SSF53850 10 251 1.31E-73 T 14-10-2018 YP_1256 f812cf05bd062a57e51b2db6c5bbc976 252 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 54 67 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site YP_1256 f812cf05bd062a57e51b2db6c5bbc976 252 Gene3D G3DSA:3.40.190.10 117 210 7.5E-84 T 14-10-2018 YP_3323 f78a041ab0f716079a5ac9cabf068549 313 Gene3D G3DSA:3.20.20.70 28 313 1.3E-94 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3323 f78a041ab0f716079a5ac9cabf068549 313 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 158 169 - T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YP_3323 f78a041ab0f716079a5ac9cabf068549 313 SUPERFAMILY SSF51569 30 311 2.2E-86 T 14-10-2018 YP_3323 f78a041ab0f716079a5ac9cabf068549 313 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 28 312 9.1E-80 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YP_3323 f78a041ab0f716079a5ac9cabf068549 313 Pfam PF01116 Fructose-bisphosphate aldolase class-II 35 311 5.2E-91 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YP_3323 f78a041ab0f716079a5ac9cabf068549 313 PIRSF PIRSF001359 28 313 4.1E-102 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 Gene3D G3DSA:2.70.20.10 219 479 4.6E-164 T 14-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 738 55.078 T 14-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 197 215 3.8E-37 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 320 329 3.8E-37 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 496 510 3.8E-37 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 112 125 3.8E-37 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 396 412 3.8E-37 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 Pfam PF01751 Toprim domain 5 148 1.4E-32 T 14-10-2018 IPR006171 TOPRIM domain YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 Gene3D G3DSA:1.10.460.10 171 577 4.6E-164 T 14-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 Pfam PF08272 Topoisomerase I zinc-ribbon-like 830 869 1.0E-23 T 14-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 Pfam PF08272 Topoisomerase I zinc-ribbon-like 766 799 3.0E-11 T 14-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 Gene3D G3DSA:3.30.65.10 751 813 8.9E-31 T 14-10-2018 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 Gene3D G3DSA:3.30.65.10 705 750 5.6E-6 T 14-10-2018 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 SUPERFAMILY SSF57783 706 749 2.21E-7 T 14-10-2018 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 SMART SM00493 3 138 2.4E-34 T 14-10-2018 IPR006171 TOPRIM domain YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 Gene3D G3DSA:2.20.25.10 814 871 8.0E-31 T 14-10-2018 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 SUPERFAMILY SSF56712 3 615 9.55E-202 T 14-10-2018 IPR023405 DNA topoisomerase, type IA, core domain YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 SUPERFAMILY SSF57783 815 870 1.63E-22 T 14-10-2018 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 SMART SM00436 139 227 1.0E-47 T 14-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 715 750 1.1E-11 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 603 628 8.9E-6 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 315 329 - T 14-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 SMART SM00437 278 533 1.2E-119 T 14-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 Gene3D G3DSA:1.10.290.10 286 410 4.6E-164 T 14-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 Pfam PF01131 DNA topoisomerase 163 571 2.2E-126 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 641 5.3E-255 T 14-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 SUPERFAMILY SSF57783 751 813 2.55E-18 T 14-10-2018 YP_2016 ddedca1096bd3df0f67df19352e5b2f6 871 Gene3D G3DSA:3.40.50.140 1 169 8.5E-67 T 14-10-2018 YP_0364 9720b285d9e38ea2a6db57275ad6418c 236 SUPERFAMILY SSF89155 18 235 3.92E-50 T 14-10-2018 IPR036411 TorD-like superfamily YP_0364 9720b285d9e38ea2a6db57275ad6418c 236 Gene3D G3DSA:1.10.3480.10 21 236 3.3E-48 T 14-10-2018 YP_0364 9720b285d9e38ea2a6db57275ad6418c 236 Hamap MF_00940 Tat proofreading chaperone DmsD [dmsD]. 21 236 43.699 T 14-10-2018 IPR028611 Tat proofreading chaperone DmsD GO:0005048 YP_0364 9720b285d9e38ea2a6db57275ad6418c 236 PIRSF PIRSF004690 19 236 1.1E-62 T 14-10-2018 IPR026269 Tat proofreading chaperone DmsD-type YP_0364 9720b285d9e38ea2a6db57275ad6418c 236 Pfam PF02613 Nitrate reductase delta subunit 80 191 4.6E-19 T 14-10-2018 IPR020945 DMSO/Nitrate reductase chaperone YP_3443 6a6f603398f10c881f2b8300fca671f3 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 53 5.3E-13 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_3443 6a6f603398f10c881f2b8300fca671f3 339 Gene3D G3DSA:3.40.50.2300 165 294 2.8E-56 T 14-10-2018 YP_3443 6a6f603398f10c881f2b8300fca671f3 339 Gene3D G3DSA:1.10.260.40 1 52 1.6E-17 T 14-10-2018 YP_3443 6a6f603398f10c881f2b8300fca671f3 339 SUPERFAMILY SSF53822 66 335 8.64E-63 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_3443 6a6f603398f10c881f2b8300fca671f3 339 SMART SM00354 6 75 1.2E-7 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_3443 6a6f603398f10c881f2b8300fca671f3 339 Gene3D G3DSA:3.40.50.2300 66 310 2.8E-56 T 14-10-2018 YP_3443 6a6f603398f10c881f2b8300fca671f3 339 SUPERFAMILY SSF47413 7 62 2.69E-12 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_3443 6a6f603398f10c881f2b8300fca671f3 339 Pfam PF13377 Periplasmic binding protein-like domain 174 334 2.8E-32 T 14-10-2018 YP_1897 d3a60a23694ae1421be1fe7d6ec68548 147 Pfam PF00293 NUDIX domain 5 134 4.9E-18 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YP_1897 d3a60a23694ae1421be1fe7d6ec68548 147 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YP_1897 d3a60a23694ae1421be1fe7d6ec68548 147 Gene3D G3DSA:3.90.79.10 1 147 3.5E-43 T 14-10-2018 YP_1897 d3a60a23694ae1421be1fe7d6ec68548 147 SUPERFAMILY SSF55811 2 144 4.2E-25 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YP_1897 d3a60a23694ae1421be1fe7d6ec68548 147 PRINTS PR01404 DATP pyrophosphohydrolase signature 3 20 5.8E-47 T 14-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 YP_1897 d3a60a23694ae1421be1fe7d6ec68548 147 PRINTS PR01404 DATP pyrophosphohydrolase signature 71 90 5.8E-47 T 14-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 YP_1897 d3a60a23694ae1421be1fe7d6ec68548 147 PRINTS PR01404 DATP pyrophosphohydrolase signature 126 139 5.8E-47 T 14-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 YP_1897 d3a60a23694ae1421be1fe7d6ec68548 147 PRINTS PR01404 DATP pyrophosphohydrolase signature 20 41 5.8E-47 T 14-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 YP_1897 d3a60a23694ae1421be1fe7d6ec68548 147 PRINTS PR01404 DATP pyrophosphohydrolase signature 99 120 5.8E-47 T 14-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 YP_2392 706aabb44dd3580870f752a38ad7d061 505 PIRSF PIRSF000485 1 483 1.5E-169 T 14-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 YP_2392 706aabb44dd3580870f752a38ad7d061 505 Pfam PF00156 Phosphoribosyl transferase domain 294 394 5.8E-8 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 YP_2392 706aabb44dd3580870f752a38ad7d061 505 SUPERFAMILY SSF53271 252 485 1.31E-72 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like YP_2392 706aabb44dd3580870f752a38ad7d061 505 Gene3D G3DSA:3.40.50.2020 279 443 3.2E-161 T 14-10-2018 YP_2392 706aabb44dd3580870f752a38ad7d061 505 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 466 1.0E-161 T 14-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 YP_2392 706aabb44dd3580870f752a38ad7d061 505 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 466 44.614 T 14-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 YP_2392 706aabb44dd3580870f752a38ad7d061 505 SUPERFAMILY SSF56235 2 259 1.2E-75 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YP_2392 706aabb44dd3580870f752a38ad7d061 505 Gene3D G3DSA:3.60.20.10 2 414 3.2E-161 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YP_2392 706aabb44dd3580870f752a38ad7d061 505 Pfam PF13522 Glutamine amidotransferase domain 65 210 4.8E-15 T 14-10-2018 YP_0238 193b0e7e15ad408a5f2e2f7fe4614b45 435 Gene3D G3DSA:3.30.70.1170 179 236 3.7E-26 T 14-10-2018 YP_0238 193b0e7e15ad408a5f2e2f7fe4614b45 435 Hamap MF_01856 Ribosomal RNA small subunit methyltransferase B [rsmB]. 7 435 70.041 T 14-10-2018 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae GO:0008649 YP_0238 193b0e7e15ad408a5f2e2f7fe4614b45 435 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 14 435 3.0E-174 T 14-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 YP_0238 193b0e7e15ad408a5f2e2f7fe4614b45 435 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 322 333 - T 14-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 YP_0238 193b0e7e15ad408a5f2e2f7fe4614b45 435 Gene3D G3DSA:1.10.287.730 152 178 7.7E-15 T 14-10-2018 YP_0238 193b0e7e15ad408a5f2e2f7fe4614b45 435 Pfam PF01189 16S rRNA methyltransferase RsmB/F 247 432 9.7E-77 T 14-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 YP_0238 193b0e7e15ad408a5f2e2f7fe4614b45 435 Gene3D G3DSA:1.10.940.10 7 151 1.2E-47 T 14-10-2018 IPR035926 NusB-like superfamily YP_0238 193b0e7e15ad408a5f2e2f7fe4614b45 435 SUPERFAMILY SSF48013 12 155 5.07E-36 T 14-10-2018 IPR035926 NusB-like superfamily YP_0238 193b0e7e15ad408a5f2e2f7fe4614b45 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 228 242 3.1E-31 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase YP_0238 193b0e7e15ad408a5f2e2f7fe4614b45 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 257 267 3.1E-31 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase YP_0238 193b0e7e15ad408a5f2e2f7fe4614b45 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 323 335 3.1E-31 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase YP_0238 193b0e7e15ad408a5f2e2f7fe4614b45 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 373 389 3.1E-31 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase YP_0238 193b0e7e15ad408a5f2e2f7fe4614b45 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 417 434 3.1E-31 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase YP_0238 193b0e7e15ad408a5f2e2f7fe4614b45 435 Gene3D G3DSA:3.40.50.150 237 435 1.3E-72 T 14-10-2018 YP_0238 193b0e7e15ad408a5f2e2f7fe4614b45 435 Pfam PF01029 NusB family 12 133 4.7E-25 T 14-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 YP_0238 193b0e7e15ad408a5f2e2f7fe4614b45 435 SUPERFAMILY SSF53335 148 435 8.74E-79 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_pCD37 2b53e6d903d6f51346ac0c8fbb53009f 261 Pfam PF01311 Bacterial export proteins, family 1 11 245 6.8E-51 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_pCD37 2b53e6d903d6f51346ac0c8fbb53009f 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 1.0E-30 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_pCD37 2b53e6d903d6f51346ac0c8fbb53009f 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 19 40 1.0E-30 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_pCD37 2b53e6d903d6f51346ac0c8fbb53009f 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 1.0E-30 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_pCD37 2b53e6d903d6f51346ac0c8fbb53009f 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 79 98 1.0E-30 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_pCD37 2b53e6d903d6f51346ac0c8fbb53009f 261 TIGRFAM TIGR01401 fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT 7 255 1.1E-76 T 14-10-2018 IPR006304 Type III secretion protein SpaR/YscT GO:0016021 YP_3817 ae9da9fc83791c1b37a7d1550df4864f 132 Pfam PF00380 Ribosomal protein S9/S16 12 132 7.0E-46 T 14-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 YP_3817 ae9da9fc83791c1b37a7d1550df4864f 132 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 3 132 33.996 T 14-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid YP_3817 ae9da9fc83791c1b37a7d1550df4864f 132 ProSitePatterns PS00360 Ribosomal protein S9 signature. 71 89 - T 14-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 YP_3817 ae9da9fc83791c1b37a7d1550df4864f 132 Gene3D G3DSA:3.30.230.10 3 132 4.7E-54 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_3817 ae9da9fc83791c1b37a7d1550df4864f 132 SUPERFAMILY SSF54211 7 132 2.88E-49 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_2364 c3532d062db63b5e948232b458a28569 598 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 48 175 2.3E-45 T 14-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2364 c3532d062db63b5e948232b458a28569 598 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 24 184 25.19 T 14-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2364 c3532d062db63b5e948232b458a28569 598 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 251 262 - T 14-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2364 c3532d062db63b5e948232b458a28569 598 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 214 598 9.7E-176 T 14-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2364 c3532d062db63b5e948232b458a28569 598 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 328 598 2.8E-105 T 14-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2364 c3532d062db63b5e948232b458a28569 598 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 210 598 41.874 T 14-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2364 c3532d062db63b5e948232b458a28569 598 Gene3D G3DSA:3.30.460.80 6 156 1.3E-35 T 14-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2364 c3532d062db63b5e948232b458a28569 598 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 49 176 3.8E-42 T 14-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2364 c3532d062db63b5e948232b458a28569 598 Gene3D G3DSA:1.10.645.20 213 598 6.2E-143 T 14-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2364 c3532d062db63b5e948232b458a28569 598 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 15 598 72.302 T 14-10-2018 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 YP_2364 c3532d062db63b5e948232b458a28569 598 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 104 159 1.0E-26 T 14-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2364 c3532d062db63b5e948232b458a28569 598 SUPERFAMILY SSF143243 24 228 1.57E-60 T 14-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2364 c3532d062db63b5e948232b458a28569 598 SUPERFAMILY SSF56762 224 598 2.49E-121 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_0449 a420864d0c6d37f97cc27834d05842a4 272 PIRSF PIRSF030802 3 259 7.2E-145 T 14-10-2018 IPR024197 Uncharacterised conserved protein UCP030802 YP_0449 a420864d0c6d37f97cc27834d05842a4 272 Gene3D G3DSA:3.40.50.1000 51 236 2.0E-6 T 14-10-2018 IPR023214 HAD superfamily YP_0449 a420864d0c6d37f97cc27834d05842a4 272 Gene3D G3DSA:3.90.1070.10 113 196 2.0E-6 T 14-10-2018 YP_0449 a420864d0c6d37f97cc27834d05842a4 272 SUPERFAMILY SSF56784 3 240 4.44E-17 T 14-10-2018 IPR036412 HAD-like superfamily YP_2798 f8b6c09000e8ed815ff56d6c04540b8a 795 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 24 795 4.8E-282 T 14-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 YP_2798 f8b6c09000e8ed815ff56d6c04540b8a 795 Pfam PF07244 Surface antigen variable number repeat 348 421 9.7E-14 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 YP_2798 f8b6c09000e8ed815ff56d6c04540b8a 795 Pfam PF07244 Surface antigen variable number repeat 92 172 3.2E-11 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 YP_2798 f8b6c09000e8ed815ff56d6c04540b8a 795 Pfam PF07244 Surface antigen variable number repeat 267 344 6.1E-12 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 YP_2798 f8b6c09000e8ed815ff56d6c04540b8a 795 Pfam PF07244 Surface antigen variable number repeat 176 263 2.4E-15 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 YP_2798 f8b6c09000e8ed815ff56d6c04540b8a 795 Gene3D G3DSA:3.10.20.310 347 425 3.1E-25 T 14-10-2018 YP_2798 f8b6c09000e8ed815ff56d6c04540b8a 795 Gene3D G3DSA:3.10.20.310 92 174 5.7E-16 T 14-10-2018 YP_2798 f8b6c09000e8ed815ff56d6c04540b8a 795 Gene3D G3DSA:3.10.20.310 265 346 3.0E-16 T 14-10-2018 YP_2798 f8b6c09000e8ed815ff56d6c04540b8a 795 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 2 795 25.905 T 14-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 YP_2798 f8b6c09000e8ed815ff56d6c04540b8a 795 Pfam PF01103 Surface antigen 448 795 5.5E-100 T 14-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 YP_2798 f8b6c09000e8ed815ff56d6c04540b8a 795 Gene3D G3DSA:3.10.20.310 19 91 2.3E-20 T 14-10-2018 YP_2798 f8b6c09000e8ed815ff56d6c04540b8a 795 PIRSF PIRSF006076 1 795 1.1E-251 T 14-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 YP_2798 f8b6c09000e8ed815ff56d6c04540b8a 795 Gene3D G3DSA:2.40.160.50 426 795 1.3E-141 T 14-10-2018 YP_2798 f8b6c09000e8ed815ff56d6c04540b8a 795 Gene3D G3DSA:3.10.20.310 175 264 1.7E-23 T 14-10-2018 YP_0542 0a784ffdf5113f66e902cce07d92495a 130 SUPERFAMILY SSF54995 1 103 1.83E-37 T 14-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0542 0a784ffdf5113f66e902cce07d92495a 130 Gene3D G3DSA:3.30.70.60 1 92 8.1E-33 T 14-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 YP_0542 0a784ffdf5113f66e902cce07d92495a 130 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 1.0E-37 T 14-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0542 0a784ffdf5113f66e902cce07d92495a 130 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 14-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 YP_0542 0a784ffdf5113f66e902cce07d92495a 130 Pfam PF01250 Ribosomal protein S6 3 91 9.4E-28 T 14-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0542 0a784ffdf5113f66e902cce07d92495a 130 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.959 T 14-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 YP_3981 1dec0e821a30cc058442d229c91793bc 689 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 688 26.636 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_3981 1dec0e821a30cc058442d229c91793bc 689 Pfam PF05746 DALR anticodon binding domain 582 679 4.1E-8 T 14-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 YP_3981 1dec0e821a30cc058442d229c91793bc 689 SUPERFAMILY SSF109604 339 536 1.67E-15 T 14-10-2018 YP_3981 1dec0e821a30cc058442d229c91793bc 689 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 551 2.7E-212 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_3981 1dec0e821a30cc058442d229c91793bc 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 318 334 7.8E-37 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_3981 1dec0e821a30cc058442d229c91793bc 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 394 413 7.8E-37 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_3981 1dec0e821a30cc058442d229c91793bc 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 246 261 7.8E-37 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_3981 1dec0e821a30cc058442d229c91793bc 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 7.8E-37 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_3981 1dec0e821a30cc058442d229c91793bc 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 7.8E-37 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_3981 1dec0e821a30cc058442d229c91793bc 689 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 689 0.0 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_3977 8427f806598536207bf4a15c9a7a43be 184 SUPERFAMILY SSF158668 6 170 2.22E-58 T 14-10-2018 IPR038026 MtlR-like superfamily YP_3977 8427f806598536207bf4a15c9a7a43be 184 Gene3D G3DSA:1.20.120.330 3 172 4.7E-62 T 14-10-2018 YP_3977 8427f806598536207bf4a15c9a7a43be 184 Pfam PF05068 Mannitol repressor 9 170 6.9E-63 T 14-10-2018 IPR007761 Mannitol repressor MtlR-like YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 51 8.0E-8 T 14-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 314 364 2.4E-14 T 14-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 Gene3D G3DSA:3.30.56.50 2 50 8.4E-26 T 14-10-2018 YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 889 17.604 T 14-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 SUPERFAMILY SSF52540 390 559 5.26E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 Gene3D G3DSA:3.40.50.10050 685 792 6.1E-37 T 14-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 SUPERFAMILY SSF46955 3 50 4.94E-13 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 SUPERFAMILY SSF50447 565 646 4.91E-23 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 Pfam PF03144 Elongation factor Tu domain 2 812 879 9.2E-8 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 Gene3D G3DSA:2.40.30.10 793 890 2.0E-34 T 14-10-2018 YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 57 94 4.6E-16 T 14-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 306 891 4.1E-291 T 14-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 Gene3D G3DSA:3.40.50.300 389 562 1.5E-72 T 14-10-2018 YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 Pfam PF00009 Elongation factor Tu GTP binding domain 395 552 3.1E-35 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 SUPERFAMILY SSF50447 792 889 5.89E-35 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 394 550 9.9E-34 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 Gene3D G3DSA:2.40.30.10 563 681 1.1E-39 T 14-10-2018 YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 Pfam PF11987 Translation-initiation factor 2 676 781 2.2E-36 T 14-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 ProSitePatterns PS01176 Initiation factor 2 signature. 842 864 - T 14-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 YP_0587 34b2e5fea219fac73e35ef9a926b122e 892 SUPERFAMILY SSF52156 669 798 1.09E-37 T 14-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily YP_1052 a27963efa29c314af6e200015a87246c 116 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 7 115 31.46 T 14-10-2018 IPR026592 Outer membrane protein assembly factor BamE YP_1052 a27963efa29c314af6e200015a87246c 116 Pfam PF04355 SmpA / OmlA family 38 107 1.5E-25 T 14-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 YP_1052 a27963efa29c314af6e200015a87246c 116 Gene3D G3DSA:3.30.1450.10 37 116 7.1E-30 T 14-10-2018 IPR037873 BamE-like YP_0936 c1fb75b879633152ad4c1f7af849b1a4 768 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 26 144 1.4E-20 T 14-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 YP_0936 c1fb75b879633152ad4c1f7af849b1a4 768 Gene3D G3DSA:3.40.640.10 150 453 1.2E-89 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_0936 c1fb75b879633152ad4c1f7af849b1a4 768 Gene3D G3DSA:3.40.50.2300 10 149 4.5E-47 T 14-10-2018 YP_0936 c1fb75b879633152ad4c1f7af849b1a4 768 SUPERFAMILY SSF53383 150 620 1.45E-103 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_0936 c1fb75b879633152ad4c1f7af849b1a4 768 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 394 408 - T 14-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 YP_0936 c1fb75b879633152ad4c1f7af849b1a4 768 PIRSF PIRSF009393 6 768 7.7E-279 T 14-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 YP_0936 c1fb75b879633152ad4c1f7af849b1a4 768 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 628 757 9.5E-43 T 14-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 YP_0936 c1fb75b879633152ad4c1f7af849b1a4 768 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 150 603 9.3E-159 T 14-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 YP_0936 c1fb75b879633152ad4c1f7af849b1a4 768 SUPERFAMILY SSF55904 623 763 1.12E-35 T 14-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 YP_0936 c1fb75b879633152ad4c1f7af849b1a4 768 Gene3D G3DSA:3.90.1150.10 454 643 4.0E-74 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_0936 c1fb75b879633152ad4c1f7af849b1a4 768 Gene3D G3DSA:3.90.100.10 644 768 3.8E-40 T 14-10-2018 YP_0135 cbc7a0968c1b76b2da79a675586b3ebe 791 SUPERFAMILY SSF53098 322 468 3.29E-49 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_0135 cbc7a0968c1b76b2da79a675586b3ebe 791 SUPERFAMILY SSF47781 469 557 9.12E-29 T 14-10-2018 IPR010994 RuvA domain 2-like YP_0135 cbc7a0968c1b76b2da79a675586b3ebe 791 Pfam PF00575 S1 RNA binding domain 649 719 3.8E-22 T 14-10-2018 IPR003029 S1 domain GO:0003676 YP_0135 cbc7a0968c1b76b2da79a675586b3ebe 791 SMART SM00732 326 423 1.5E-34 T 14-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 YP_0135 cbc7a0968c1b76b2da79a675586b3ebe 791 Gene3D G3DSA:3.30.420.140 325 450 5.5E-152 T 14-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 YP_0135 cbc7a0968c1b76b2da79a675586b3ebe 791 Gene3D G3DSA:1.10.3500.10 112 497 5.5E-152 T 14-10-2018 IPR023323 Tex-like domain superfamily YP_0135 cbc7a0968c1b76b2da79a675586b3ebe 791 Gene3D G3DSA:1.10.10.650 2 109 1.6E-38 T 14-10-2018 IPR023319 Tex-like protein, HTH domain superfamily YP_0135 cbc7a0968c1b76b2da79a675586b3ebe 791 Gene3D G3DSA:1.10.150.310 498 629 1.7E-50 T 14-10-2018 YP_0135 cbc7a0968c1b76b2da79a675586b3ebe 791 Pfam PF12836 Helix-hairpin-helix motif 490 554 1.3E-28 T 14-10-2018 YP_0135 cbc7a0968c1b76b2da79a675586b3ebe 791 SUPERFAMILY SSF47781 559 631 3.33E-19 T 14-10-2018 IPR010994 RuvA domain 2-like YP_0135 cbc7a0968c1b76b2da79a675586b3ebe 791 SUPERFAMILY SSF50249 637 722 8.95E-25 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_0135 cbc7a0968c1b76b2da79a675586b3ebe 791 SUPERFAMILY SSF158832 3 321 1.96E-118 T 14-10-2018 YP_0135 cbc7a0968c1b76b2da79a675586b3ebe 791 Pfam PF16921 Tex protein YqgF-like domain 327 450 3.6E-49 T 14-10-2018 IPR032639 Tex protein, YqgF-like domain YP_0135 cbc7a0968c1b76b2da79a675586b3ebe 791 Pfam PF09371 Tex-like protein N-terminal domain 9 193 1.9E-68 T 14-10-2018 IPR018974 Tex-like protein, N-terminal YP_0135 cbc7a0968c1b76b2da79a675586b3ebe 791 SMART SM00316 648 719 1.2E-25 T 14-10-2018 IPR022967 RNA-binding domain, S1 YP_0135 cbc7a0968c1b76b2da79a675586b3ebe 791 Gene3D G3DSA:2.40.50.140 630 723 1.6E-28 T 14-10-2018 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SUPERFAMILY SSF52151 550 835 2.04E-60 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SUPERFAMILY SSF52777 2098 2343 9.23E-44 T 14-10-2018 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 404 515 1.4E-13 T 14-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SUPERFAMILY SSF51735 1557 1786 2.7E-29 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Gene3D G3DSA:3.40.50.720 1346 1796 3.2E-67 T 14-10-2018 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SUPERFAMILY SSF53335 1060 1250 1.36E-29 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SUPERFAMILY SSF55048 675 736 1.44E-6 T 14-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Gene3D G3DSA:1.10.1200.10 2813 2902 8.4E-18 T 14-10-2018 IPR036736 ACP-like superfamily YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Gene3D G3DSA:3.30.559.30 2095 2349 7.7E-83 T 14-10-2018 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Pfam PF00668 Condensation domain 1948 2262 6.3E-33 T 14-10-2018 IPR001242 Condensation domain YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Gene3D G3DSA:3.40.47.10 19 473 2.0E-152 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2853 2868 - T 14-10-2018 IPR006162 Phosphopantetheine attachment site YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 27 276 1.6E-74 T 14-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Gene3D G3DSA:3.40.366.10 551 847 8.6E-110 T 14-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Pfam PF00975 Thioesterase domain 2915 3006 2.7E-20 T 14-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Gene3D G3DSA:1.10.1200.10 1812 1894 2.7E-8 T 14-10-2018 IPR036736 ACP-like superfamily YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Gene3D G3DSA:3.30.559.10 1909 2092 2.1E-53 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 189 205 - T 14-10-2018 IPR018201 Beta-ketoacyl synthase, active site YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SUPERFAMILY SSF47336 2828 2894 1.44E-12 T 14-10-2018 IPR036736 ACP-like superfamily YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1558 1731 5.1E-26 T 14-10-2018 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SMART SM00825 Beta-ketoacyl synthase 29 452 4.9E-182 T 14-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Gene3D G3DSA:3.40.50.1820 2905 3157 1.9E-40 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Gene3D G3DSA:3.30.70.3290 474 890 8.6E-110 T 14-10-2018 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Pfam PF00698 Acyl transferase domain 551 846 1.9E-52 T 14-10-2018 IPR014043 Acyl transferase YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SMART SM00823 Phosphopantetheine attachment site 2830 2898 0.0025 T 14-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SMART SM00823 Phosphopantetheine attachment site 1821 1893 8.8E-4 T 14-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Pfam PF00550 Phosphopantetheine attachment site 1823 1889 4.1E-8 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Pfam PF00550 Phosphopantetheine attachment site 2832 2894 3.8E-13 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 553 844 1.5E-78 T 14-10-2018 IPR020801 Polyketide synthase, acyl transferase domain YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Pfam PF08659 KR domain 1560 1729 4.7E-37 T 14-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1848 1863 - T 14-10-2018 IPR006162 Phosphopantetheine attachment site YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SUPERFAMILY SSF53474 2898 3152 2.85E-44 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SUPERFAMILY SSF47336 1817 1928 7.85E-13 T 14-10-2018 IPR036736 ACP-like superfamily YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Gene3D G3DSA:3.40.50.150 2453 2767 1.1E-45 T 14-10-2018 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Gene3D G3DSA:3.40.50.150 971 1253 4.5E-52 T 14-10-2018 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SUPERFAMILY SSF53901 23 447 1.14E-78 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 285 401 1.1E-39 T 14-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SUPERFAMILY SSF51735 1365 1540 7.48E-11 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SUPERFAMILY SSF53335 2575 2750 4.8E-23 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SUPERFAMILY SSF52777 1911 2109 1.89E-23 T 14-10-2018 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 SMART SM00824 Thioesterase 2918 3152 6.1E-4 T 14-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Pfam PF08242 Methyltransferase domain 2593 2693 1.7E-16 T 14-10-2018 IPR013217 Methyltransferase type 12 YP_1653 4f98f81578b3b9d7fcf87f5d7398d618 3163 Pfam PF08242 Methyltransferase domain 1093 1194 1.2E-20 T 14-10-2018 IPR013217 Methyltransferase type 12 YP_0588 2729e9d28f18984ac0032b577b896a34 154 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 27 121 9.0E-50 T 14-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 YP_0588 2729e9d28f18984ac0032b577b896a34 154 Pfam PF02033 Ribosome-binding factor A 25 133 7.5E-30 T 14-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 YP_0588 2729e9d28f18984ac0032b577b896a34 154 Gene3D G3DSA:3.30.300.20 19 129 5.7E-38 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta YP_0588 2729e9d28f18984ac0032b577b896a34 154 SUPERFAMILY SSF89919 20 128 3.92E-31 T 14-10-2018 IPR023799 Ribosome-binding factor A domain superfamily YP_0588 2729e9d28f18984ac0032b577b896a34 154 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 24 134 25.789 T 14-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 YP_0588 2729e9d28f18984ac0032b577b896a34 154 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 19 139 2.5E-40 T 14-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 YP_0588 2729e9d28f18984ac0032b577b896a34 154 ProSitePatterns PS01319 Ribosome-binding factor A signature. 100 121 - T 14-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 YP_0167 d64d2ccf6c585bf222f7ad716b380496 328 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 14-10-2018 YP_0167 d64d2ccf6c585bf222f7ad716b380496 328 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 1.3E-5 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_0167 d64d2ccf6c585bf222f7ad716b380496 328 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 1.3E-5 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_0167 d64d2ccf6c585bf222f7ad716b380496 328 SMART SM00354 1 71 2.2E-27 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_0167 d64d2ccf6c585bf222f7ad716b380496 328 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 47 1.6E-17 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_0167 d64d2ccf6c585bf222f7ad716b380496 328 Gene3D G3DSA:3.40.50.2300 61 303 6.3E-64 T 14-10-2018 YP_0167 d64d2ccf6c585bf222f7ad716b380496 328 SUPERFAMILY SSF47413 1 59 2.32E-16 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_0167 d64d2ccf6c585bf222f7ad716b380496 328 Pfam PF13377 Periplasmic binding protein-like domain 169 321 2.0E-31 T 14-10-2018 YP_0167 d64d2ccf6c585bf222f7ad716b380496 328 Gene3D G3DSA:3.40.50.2300 160 287 6.3E-64 T 14-10-2018 YP_0167 d64d2ccf6c585bf222f7ad716b380496 328 SUPERFAMILY SSF53822 61 324 2.14E-69 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_0167 d64d2ccf6c585bf222f7ad716b380496 328 Gene3D G3DSA:1.10.260.40 1 58 1.6E-21 T 14-10-2018 YP_2141 2f72638d939d64c3e747112eb659c1ff 152 SUPERFAMILY SSF143422 1 129 1.03E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2141 2f72638d939d64c3e747112eb659c1ff 152 SMART SM01321 11 129 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2141 2f72638d939d64c3e747112eb659c1ff 152 Gene3D G3DSA:3.30.70.1290 3 136 8.6E-41 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2141 2f72638d939d64c3e747112eb659c1ff 152 Pfam PF01797 Transposase IS200 like 12 129 4.0E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0251 2f72638d939d64c3e747112eb659c1ff 152 SUPERFAMILY SSF143422 1 129 1.03E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0251 2f72638d939d64c3e747112eb659c1ff 152 SMART SM01321 11 129 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0251 2f72638d939d64c3e747112eb659c1ff 152 Gene3D G3DSA:3.30.70.1290 3 136 8.6E-41 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0251 2f72638d939d64c3e747112eb659c1ff 152 Pfam PF01797 Transposase IS200 like 12 129 4.0E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_1410 2f72638d939d64c3e747112eb659c1ff 152 SUPERFAMILY SSF143422 1 129 1.03E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_1410 2f72638d939d64c3e747112eb659c1ff 152 SMART SM01321 11 129 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_1410 2f72638d939d64c3e747112eb659c1ff 152 Gene3D G3DSA:3.30.70.1290 3 136 8.6E-41 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_1410 2f72638d939d64c3e747112eb659c1ff 152 Pfam PF01797 Transposase IS200 like 12 129 4.0E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_pMT043 2f72638d939d64c3e747112eb659c1ff 152 SUPERFAMILY SSF143422 1 129 1.03E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_pMT043 2f72638d939d64c3e747112eb659c1ff 152 SMART SM01321 11 129 2.7E-38 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_pMT043 2f72638d939d64c3e747112eb659c1ff 152 Gene3D G3DSA:3.30.70.1290 3 136 8.6E-41 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_pMT043 2f72638d939d64c3e747112eb659c1ff 152 Pfam PF01797 Transposase IS200 like 12 129 4.0E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0910 0c70407e943b1a3fa4d735e6de91bf13 311 PIRSF PIRSF001522 1 311 6.9E-127 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_0910 0c70407e943b1a3fa4d735e6de91bf13 311 Gene3D G3DSA:2.40.128.90 27 311 1.3E-99 T 14-10-2018 YP_0910 0c70407e943b1a3fa4d735e6de91bf13 311 Pfam PF01278 Omptin family 32 311 6.8E-117 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_0910 0c70407e943b1a3fa4d735e6de91bf13 311 PRINTS PR00482 Omptin serine protease signature 236 256 2.8E-69 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_0910 0c70407e943b1a3fa4d735e6de91bf13 311 PRINTS PR00482 Omptin serine protease signature 117 144 2.8E-69 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_0910 0c70407e943b1a3fa4d735e6de91bf13 311 PRINTS PR00482 Omptin serine protease signature 188 209 2.8E-69 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_0910 0c70407e943b1a3fa4d735e6de91bf13 311 PRINTS PR00482 Omptin serine protease signature 257 277 2.8E-69 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_0910 0c70407e943b1a3fa4d735e6de91bf13 311 PRINTS PR00482 Omptin serine protease signature 210 231 2.8E-69 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_0910 0c70407e943b1a3fa4d735e6de91bf13 311 PRINTS PR00482 Omptin serine protease signature 85 110 2.8E-69 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_0910 0c70407e943b1a3fa4d735e6de91bf13 311 PRINTS PR00482 Omptin serine protease signature 39 53 2.8E-69 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_0910 0c70407e943b1a3fa4d735e6de91bf13 311 PRINTS PR00482 Omptin serine protease signature 59 84 2.8E-69 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_0910 0c70407e943b1a3fa4d735e6de91bf13 311 PRINTS PR00482 Omptin serine protease signature 145 172 2.8E-69 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_0910 0c70407e943b1a3fa4d735e6de91bf13 311 SUPERFAMILY SSF69917 31 311 3.66E-99 T 14-10-2018 IPR020080 Outer membrane adhesin/peptidase omptin GO:0004190 YP_0536 649f3d373f1715be0e78e8b04c568889 844 SUPERFAMILY SSF50249 222 642 4.63E-141 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_0536 649f3d373f1715be0e78e8b04c568889 844 Pfam PF00773 RNB domain 260 587 5.2E-106 T 14-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 YP_0536 649f3d373f1715be0e78e8b04c568889 844 SUPERFAMILY SSF50249 645 725 8.01E-21 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_0536 649f3d373f1715be0e78e8b04c568889 844 SMART SM00955 260 588 8.3E-183 T 14-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 YP_0536 649f3d373f1715be0e78e8b04c568889 844 SMART SM00357 86 145 2.7E-16 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 YP_0536 649f3d373f1715be0e78e8b04c568889 844 Pfam PF00575 S1 RNA binding domain 642 724 1.2E-16 T 14-10-2018 IPR003029 S1 domain GO:0003676 YP_0536 649f3d373f1715be0e78e8b04c568889 844 Gene3D G3DSA:2.40.50.140 73 148 1.4E-16 T 14-10-2018 YP_0536 649f3d373f1715be0e78e8b04c568889 844 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 67 726 3.5E-270 T 14-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 YP_0536 649f3d373f1715be0e78e8b04c568889 844 SMART SM00316 643 726 3.4E-12 T 14-10-2018 IPR022967 RNA-binding domain, S1 YP_0536 649f3d373f1715be0e78e8b04c568889 844 SMART SM00316 80 142 12.0 T 14-10-2018 IPR022967 RNA-binding domain, S1 YP_0536 649f3d373f1715be0e78e8b04c568889 844 Hamap MF_01895 Ribonuclease R [rnr]. 38 726 57.155 T 14-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 YP_0536 649f3d373f1715be0e78e8b04c568889 844 SUPERFAMILY SSF50249 67 145 3.82E-18 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_0536 649f3d373f1715be0e78e8b04c568889 844 Pfam PF08461 Ribonuclease R winged-helix domain 23 85 1.2E-16 T 14-10-2018 IPR013668 Ribonuclease R winged-helix domain YP_0536 649f3d373f1715be0e78e8b04c568889 844 Pfam PF08206 Ribonuclease B OB domain 87 144 3.8E-22 T 14-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain YP_0536 649f3d373f1715be0e78e8b04c568889 844 Gene3D G3DSA:2.40.50.140 646 752 8.0E-23 T 14-10-2018 YP_0536 649f3d373f1715be0e78e8b04c568889 844 SUPERFAMILY SSF50249 138 236 3.62E-14 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_0536 649f3d373f1715be0e78e8b04c568889 844 TIGRFAM TIGR02063 RNase_R: ribonuclease R 19 726 4.7E-276 T 14-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 YP_2052 bf2e4acfd5b7621c48d58bc6f297f4ac 523 SUPERFAMILY SSF52540 283 497 5.62E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2052 bf2e4acfd5b7621c48d58bc6f297f4ac 523 Pfam PF00005 ABC transporter 35 184 2.2E-34 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2052 bf2e4acfd5b7621c48d58bc6f297f4ac 523 ProSitePatterns PS00211 ABC transporters family signature. 412 426 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2052 bf2e4acfd5b7621c48d58bc6f297f4ac 523 SUPERFAMILY SSF52540 18 240 1.63E-59 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2052 bf2e4acfd5b7621c48d58bc6f297f4ac 523 Pfam PF00005 ABC transporter 286 439 5.1E-19 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2052 bf2e4acfd5b7621c48d58bc6f297f4ac 523 Gene3D G3DSA:3.40.50.300 277 520 1.1E-41 T 14-10-2018 YP_2052 bf2e4acfd5b7621c48d58bc6f297f4ac 523 SMART SM00382 44 232 1.3E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2052 bf2e4acfd5b7621c48d58bc6f297f4ac 523 SMART SM00382 293 488 5.1E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2052 bf2e4acfd5b7621c48d58bc6f297f4ac 523 Gene3D G3DSA:3.40.50.300 4 255 7.4E-60 T 14-10-2018 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 Gene3D G3DSA:1.10.220.120 20 83 5.5E-31 T 14-10-2018 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 393 629 4.2E-120 T 14-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 Pfam PF04539 Sigma-70 region 3 476 551 3.2E-28 T 14-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 Pfam PF03979 Sigma-70 factor, region 1.1 23 98 2.1E-30 T 14-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 SUPERFAMILY SSF88659 470 543 2.8E-20 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 Pfam PF00140 Sigma-70 factor, region 1.2 117 147 1.8E-12 T 14-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 Pfam PF04545 Sigma-70, region 4 565 618 1.1E-18 T 14-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 590 616 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 PRINTS PR00046 Major sigma-70 factor signature 445 453 7.2E-31 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 PRINTS PR00046 Major sigma-70 factor signature 605 616 7.2E-31 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 PRINTS PR00046 Major sigma-70 factor signature 421 434 7.2E-31 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 PRINTS PR00046 Major sigma-70 factor signature 569 581 7.2E-31 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 PRINTS PR00046 Major sigma-70 factor signature 590 605 7.2E-31 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 Gene3D G3DSA:1.10.10.10 547 631 1.9E-37 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 Pfam PF04542 Sigma-70 region 2 397 466 1.8E-21 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 421 434 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 Gene3D G3DSA:1.10.10.10 470 546 5.9E-32 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 Gene3D G3DSA:1.10.601.10 132 466 1.1E-147 T 14-10-2018 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 Pfam PF04546 Sigma-70, non-essential region 158 366 4.2E-74 T 14-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 SUPERFAMILY SSF88659 527 629 2.45E-25 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 23 630 46.434 T 14-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 393 618 3.6E-38 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 YP_2958 e3e915e8ad466e6eedf26c2b77abdbba 631 SUPERFAMILY SSF88946 134 464 2.49E-102 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 YP_1885 c2c8fb1cc5f0ecaa2c03c2e6cf3f9797 536 SUPERFAMILY SSF55347 359 498 4.9E-45 T 14-10-2018 YP_1885 c2c8fb1cc5f0ecaa2c03c2e6cf3f9797 536 Gene3D G3DSA:1.10.10.10 1 87 2.7E-36 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1885 c2c8fb1cc5f0ecaa2c03c2e6cf3f9797 536 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 237 354 2.0E-25 T 14-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 YP_1885 c2c8fb1cc5f0ecaa2c03c2e6cf3f9797 536 SUPERFAMILY SSF46785 2 82 9.6E-33 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1885 c2c8fb1cc5f0ecaa2c03c2e6cf3f9797 536 SUPERFAMILY SSF46785 88 169 1.36E-25 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1885 c2c8fb1cc5f0ecaa2c03c2e6cf3f9797 536 Gene3D G3DSA:3.40.50.720 233 353 5.1E-31 T 14-10-2018 YP_1885 c2c8fb1cc5f0ecaa2c03c2e6cf3f9797 536 SUPERFAMILY SSF51735 236 370 2.28E-41 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1885 c2c8fb1cc5f0ecaa2c03c2e6cf3f9797 536 Gene3D G3DSA:3.30.360.10 354 536 1.3E-57 T 14-10-2018 YP_1885 c2c8fb1cc5f0ecaa2c03c2e6cf3f9797 536 Hamap MF_01584 UPF0502 protein YceH [yceH]. 5 229 33.616 T 14-10-2018 IPR007432 Protein of unknown function DUF480 YP_1885 c2c8fb1cc5f0ecaa2c03c2e6cf3f9797 536 Gene3D G3DSA:1.10.10.10 93 171 2.7E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1885 c2c8fb1cc5f0ecaa2c03c2e6cf3f9797 536 Pfam PF04337 Protein of unknown function, DUF480 5 156 1.1E-61 T 14-10-2018 IPR007432 Protein of unknown function DUF480 YP_3521 7705f87e858e6fd6719440b4949e429f 289 SUPERFAMILY SSF50182 114 179 7.52E-17 T 14-10-2018 IPR010920 LSM domain superfamily YP_3521 7705f87e858e6fd6719440b4949e429f 289 Gene3D G3DSA:3.30.70.100 179 273 9.3E-23 T 14-10-2018 YP_3521 7705f87e858e6fd6719440b4949e429f 289 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 143 177 - T 14-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 YP_3521 7705f87e858e6fd6719440b4949e429f 289 Pfam PF05552 Conserved TM helix 15 64 5.3E-14 T 14-10-2018 IPR008910 Conserved TM helix YP_3521 7705f87e858e6fd6719440b4949e429f 289 SUPERFAMILY SSF82689 181 279 9.55E-29 T 14-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 YP_3521 7705f87e858e6fd6719440b4949e429f 289 Pfam PF00924 Mechanosensitive ion channel 72 268 2.1E-53 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 YP_3521 7705f87e858e6fd6719440b4949e429f 289 SUPERFAMILY SSF82861 28 112 2.22E-16 T 14-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 YP_3521 7705f87e858e6fd6719440b4949e429f 289 Gene3D G3DSA:2.30.30.60 129 177 8.1E-21 T 14-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily YP_1973 d64518561ff1245d84d4ea31237977ae 457 PIRSF PIRSF000124 10 450 3.4E-146 T 14-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 YP_1973 d64518561ff1245d84d4ea31237977ae 457 SUPERFAMILY SSF52413 321 446 3.4E-40 T 14-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 YP_1973 d64518561ff1245d84d4ea31237977ae 457 Gene3D G3DSA:3.40.50.720 3 213 3.2E-75 T 14-10-2018 YP_1973 d64518561ff1245d84d4ea31237977ae 457 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 10 431 1.5E-136 T 14-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 YP_1973 d64518561ff1245d84d4ea31237977ae 457 SUPERFAMILY SSF48179 214 311 1.48E-32 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_1973 d64518561ff1245d84d4ea31237977ae 457 SMART SM00984 331 435 1.0E-52 T 14-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 YP_1973 d64518561ff1245d84d4ea31237977ae 457 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 331 435 8.1E-32 T 14-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 YP_1973 d64518561ff1245d84d4ea31237977ae 457 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 10 190 1.9E-62 T 14-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 YP_1973 d64518561ff1245d84d4ea31237977ae 457 Gene3D G3DSA:3.40.50.720 246 456 5.6E-79 T 14-10-2018 YP_1973 d64518561ff1245d84d4ea31237977ae 457 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 215 307 1.6E-38 T 14-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 YP_1973 d64518561ff1245d84d4ea31237977ae 457 SUPERFAMILY SSF51735 10 206 5.33E-51 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1973 d64518561ff1245d84d4ea31237977ae 457 Gene3D G3DSA:1.20.5.100 214 245 7.9E-19 T 14-10-2018 YP_1973 d64518561ff1245d84d4ea31237977ae 457 PIRSF PIRSF500134 10 453 4.4E-187 T 14-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 YP_0531 c36bb54bec16888618c51296be721ba1 419 PRINTS PR00721 Stomatin signature 147 168 1.1E-7 T 14-10-2018 IPR001972 Stomatin family GO:0016020 YP_0531 c36bb54bec16888618c51296be721ba1 419 PRINTS PR00721 Stomatin signature 100 122 1.1E-7 T 14-10-2018 IPR001972 Stomatin family GO:0016020 YP_0531 c36bb54bec16888618c51296be721ba1 419 PRINTS PR00721 Stomatin signature 182 199 1.1E-7 T 14-10-2018 IPR001972 Stomatin family GO:0016020 YP_0531 c36bb54bec16888618c51296be721ba1 419 Gene3D G3DSA:3.30.479.30 122 255 2.8E-18 T 14-10-2018 YP_0531 c36bb54bec16888618c51296be721ba1 419 TIGRFAM TIGR01933 hflK: HflK protein 95 354 9.8E-121 T 14-10-2018 IPR010201 HflK GO:0016021 YP_0531 c36bb54bec16888618c51296be721ba1 419 Pfam PF01145 SPFH domain / Band 7 family 97 268 4.6E-30 T 14-10-2018 IPR001107 Band 7 domain YP_0531 c36bb54bec16888618c51296be721ba1 419 Pfam PF12221 Bacterial membrane protein N terminal 1 59 4.2E-14 T 14-10-2018 IPR020980 Menbrane protein HflK, N-terminal YP_0531 c36bb54bec16888618c51296be721ba1 419 SMART SM00244 93 253 7.6E-43 T 14-10-2018 IPR001107 Band 7 domain YP_0531 c36bb54bec16888618c51296be721ba1 419 SUPERFAMILY SSF117892 126 257 4.18E-20 T 14-10-2018 IPR036013 Band 7/SPFH domain superfamily YP_3649 3bcf9ae13a6e102280e48b5b71576fa0 520 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 509 43.408 T 14-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 YP_3649 3bcf9ae13a6e102280e48b5b71576fa0 520 Pfam PF00682 HMGL-like 4 273 1.5E-105 T 14-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 YP_3649 3bcf9ae13a6e102280e48b5b71576fa0 520 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 YP_3649 3bcf9ae13a6e102280e48b5b71576fa0 520 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 499 7.3E-37 T 14-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 YP_3649 3bcf9ae13a6e102280e48b5b71576fa0 520 Gene3D G3DSA:1.10.238.260 280 392 3.7E-33 T 14-10-2018 YP_3649 3bcf9ae13a6e102280e48b5b71576fa0 520 SMART SM00917 369 500 2.0E-38 T 14-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 YP_3649 3bcf9ae13a6e102280e48b5b71576fa0 520 SUPERFAMILY SSF110921 392 499 6.67E-26 T 14-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 YP_3649 3bcf9ae13a6e102280e48b5b71576fa0 520 SUPERFAMILY SSF51569 1 291 1.43E-100 T 14-10-2018 YP_3649 3bcf9ae13a6e102280e48b5b71576fa0 520 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 YP_3649 3bcf9ae13a6e102280e48b5b71576fa0 520 Gene3D G3DSA:3.30.160.270 393 501 9.7E-12 T 14-10-2018 YP_3649 3bcf9ae13a6e102280e48b5b71576fa0 520 Gene3D G3DSA:3.20.20.70 1 277 5.7E-108 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3649 3bcf9ae13a6e102280e48b5b71576fa0 520 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 497 7.0E-252 T 14-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 YP_3803 340e6b3e0cad4db6a2d59eece76c899f 117 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 4 116 1.0E-38 T 14-10-2018 IPR003509 Uncharacterised protein family UPF0102 YP_3803 340e6b3e0cad4db6a2d59eece76c899f 117 Pfam PF02021 Uncharacterised protein family UPF0102 10 102 1.3E-23 T 14-10-2018 IPR003509 Uncharacterised protein family UPF0102 YP_3803 340e6b3e0cad4db6a2d59eece76c899f 117 Hamap MF_00048 UPF0102 protein YraN [yraN]. 3 115 23.456 T 14-10-2018 IPR003509 Uncharacterised protein family UPF0102 YP_3803 340e6b3e0cad4db6a2d59eece76c899f 117 SUPERFAMILY SSF52980 4 112 5.79E-21 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 YP_3803 340e6b3e0cad4db6a2d59eece76c899f 117 Gene3D G3DSA:3.40.1350.10 10 117 7.3E-30 T 14-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 YP_0787 c1eb9defdf5208320c2b516844609f55 616 Gene3D G3DSA:3.40.50.300 341 597 1.5E-80 T 14-10-2018 YP_0787 c1eb9defdf5208320c2b516844609f55 616 SUPERFAMILY SSF52540 344 585 6.66E-78 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0787 c1eb9defdf5208320c2b516844609f55 616 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0787 c1eb9defdf5208320c2b516844609f55 616 Pfam PF00664 ABC transporter transmembrane region 35 304 4.4E-40 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YP_0787 c1eb9defdf5208320c2b516844609f55 616 SUPERFAMILY SSF90123 21 332 1.83E-68 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_0787 c1eb9defdf5208320c2b516844609f55 616 Pfam PF00005 ABC transporter 366 514 1.9E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0787 c1eb9defdf5208320c2b516844609f55 616 Gene3D G3DSA:1.20.1560.10 3 336 5.1E-74 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_0787 c1eb9defdf5208320c2b516844609f55 616 SMART SM00382 375 566 4.2E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3289 4f8e2957bedac85fc876cee3507fac49 319 TIGRFAM TIGR00122 birA_repr_reg: biotin operon repressor 6 73 5.9E-24 T 14-10-2018 IPR004409 Biotin operon repressor, helix-turn-helix domain GO:0006355 KEGG: 00780+6.3.4.15 YP_3289 4f8e2957bedac85fc876cee3507fac49 319 Gene3D G3DSA:3.30.930.10 65 270 6.3E-75 T 14-10-2018 YP_3289 4f8e2957bedac85fc876cee3507fac49 319 Gene3D G3DSA:2.30.30.100 271 313 9.1E-24 T 14-10-2018 YP_3289 4f8e2957bedac85fc876cee3507fac49 319 SUPERFAMILY SSF50037 271 317 6.87E-12 T 14-10-2018 IPR008988 Transcriptional repressor, C-terminal YP_3289 4f8e2957bedac85fc876cee3507fac49 319 Gene3D G3DSA:1.10.10.10 1 64 2.6E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3289 4f8e2957bedac85fc876cee3507fac49 319 SUPERFAMILY SSF46785 8 60 1.61E-10 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3289 4f8e2957bedac85fc876cee3507fac49 319 Pfam PF03099 Biotin/lipoate A/B protein ligase family 84 208 1.6E-24 T 14-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 YP_3289 4f8e2957bedac85fc876cee3507fac49 319 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 7 317 32.823 T 14-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 YP_3289 4f8e2957bedac85fc876cee3507fac49 319 Pfam PF02237 Biotin protein ligase C terminal domain 272 317 1.3E-13 T 14-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 YP_3289 4f8e2957bedac85fc876cee3507fac49 319 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 80 317 7.8E-79 T 14-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 YP_3289 4f8e2957bedac85fc876cee3507fac49 319 Pfam PF08279 HTH domain 14 58 9.6E-10 T 14-10-2018 IPR013196 Helix-turn-helix, type 11 YP_3289 4f8e2957bedac85fc876cee3507fac49 319 SUPERFAMILY SSF55681 71 268 3.23E-59 T 14-10-2018 YP_1174 210f0f239652321cd2502fe5c73c5dea 637 SMART SM00382 28 230 8.5E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1174 210f0f239652321cd2502fe5c73c5dea 637 SMART SM00382 344 514 1.3E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1174 210f0f239652321cd2502fe5c73c5dea 637 Pfam PF00005 ABC transporter 336 469 3.2E-24 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1174 210f0f239652321cd2502fe5c73c5dea 637 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1174 210f0f239652321cd2502fe5c73c5dea 637 Gene3D G3DSA:3.40.50.300 283 551 2.6E-63 T 14-10-2018 YP_1174 210f0f239652321cd2502fe5c73c5dea 637 Pfam PF00005 ABC transporter 19 185 1.2E-23 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1174 210f0f239652321cd2502fe5c73c5dea 637 SUPERFAMILY SSF52540 311 501 2.33E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1174 210f0f239652321cd2502fe5c73c5dea 637 SUPERFAMILY SSF52540 4 244 1.44E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1174 210f0f239652321cd2502fe5c73c5dea 637 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1174 210f0f239652321cd2502fe5c73c5dea 637 Gene3D G3DSA:3.40.50.300 11 279 1.5E-65 T 14-10-2018 YP_1174 210f0f239652321cd2502fe5c73c5dea 637 Gene3D G3DSA:1.10.287.380 556 637 6.6E-29 T 14-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 YP_1174 210f0f239652321cd2502fe5c73c5dea 637 Pfam PF12848 ABC transporter 224 298 2.0E-9 T 14-10-2018 IPR032781 ABC-transporter extension domain YP_1174 210f0f239652321cd2502fe5c73c5dea 637 Pfam PF16326 ABC transporter C-terminal domain 564 632 5.7E-20 T 14-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 YP_3959 5ce28fed4b5352685c5d06b04d0bfb7f 261 Gene3D G3DSA:3.30.420.10 103 261 3.0E-8 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_3959 5ce28fed4b5352685c5d06b04d0bfb7f 261 Pfam PF13276 HTH-like domain 24 76 2.6E-16 T 14-10-2018 IPR025948 HTH-like domain YP_3959 5ce28fed4b5352685c5d06b04d0bfb7f 261 Pfam PF00665 Integrase core domain 102 213 1.7E-24 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_3959 5ce28fed4b5352685c5d06b04d0bfb7f 261 SUPERFAMILY SSF53098 95 253 1.82E-32 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_0592 5ce28fed4b5352685c5d06b04d0bfb7f 261 Gene3D G3DSA:3.30.420.10 103 261 3.0E-8 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_0592 5ce28fed4b5352685c5d06b04d0bfb7f 261 Pfam PF13276 HTH-like domain 24 76 2.6E-16 T 14-10-2018 IPR025948 HTH-like domain YP_0592 5ce28fed4b5352685c5d06b04d0bfb7f 261 Pfam PF00665 Integrase core domain 102 213 1.7E-24 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_0592 5ce28fed4b5352685c5d06b04d0bfb7f 261 SUPERFAMILY SSF53098 95 253 1.82E-32 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_3409 5ce28fed4b5352685c5d06b04d0bfb7f 261 Gene3D G3DSA:3.30.420.10 103 261 3.0E-8 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_3409 5ce28fed4b5352685c5d06b04d0bfb7f 261 Pfam PF13276 HTH-like domain 24 76 2.6E-16 T 14-10-2018 IPR025948 HTH-like domain YP_3409 5ce28fed4b5352685c5d06b04d0bfb7f 261 Pfam PF00665 Integrase core domain 102 213 1.7E-24 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_3409 5ce28fed4b5352685c5d06b04d0bfb7f 261 SUPERFAMILY SSF53098 95 253 1.82E-32 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_4000 5ce28fed4b5352685c5d06b04d0bfb7f 261 Gene3D G3DSA:3.30.420.10 103 261 3.0E-8 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_4000 5ce28fed4b5352685c5d06b04d0bfb7f 261 Pfam PF13276 HTH-like domain 24 76 2.6E-16 T 14-10-2018 IPR025948 HTH-like domain YP_4000 5ce28fed4b5352685c5d06b04d0bfb7f 261 Pfam PF00665 Integrase core domain 102 213 1.7E-24 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_4000 5ce28fed4b5352685c5d06b04d0bfb7f 261 SUPERFAMILY SSF53098 95 253 1.82E-32 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_3064 5ce28fed4b5352685c5d06b04d0bfb7f 261 Gene3D G3DSA:3.30.420.10 103 261 3.0E-8 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_3064 5ce28fed4b5352685c5d06b04d0bfb7f 261 Pfam PF13276 HTH-like domain 24 76 2.6E-16 T 14-10-2018 IPR025948 HTH-like domain YP_3064 5ce28fed4b5352685c5d06b04d0bfb7f 261 Pfam PF00665 Integrase core domain 102 213 1.7E-24 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_3064 5ce28fed4b5352685c5d06b04d0bfb7f 261 SUPERFAMILY SSF53098 95 253 1.82E-32 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_0120 5ce28fed4b5352685c5d06b04d0bfb7f 261 Gene3D G3DSA:3.30.420.10 103 261 3.0E-8 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_0120 5ce28fed4b5352685c5d06b04d0bfb7f 261 Pfam PF13276 HTH-like domain 24 76 2.6E-16 T 14-10-2018 IPR025948 HTH-like domain YP_0120 5ce28fed4b5352685c5d06b04d0bfb7f 261 Pfam PF00665 Integrase core domain 102 213 1.7E-24 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_0120 5ce28fed4b5352685c5d06b04d0bfb7f 261 SUPERFAMILY SSF53098 95 253 1.82E-32 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_3119 5ce28fed4b5352685c5d06b04d0bfb7f 261 Gene3D G3DSA:3.30.420.10 103 261 3.0E-8 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_3119 5ce28fed4b5352685c5d06b04d0bfb7f 261 Pfam PF13276 HTH-like domain 24 76 2.6E-16 T 14-10-2018 IPR025948 HTH-like domain YP_3119 5ce28fed4b5352685c5d06b04d0bfb7f 261 Pfam PF00665 Integrase core domain 102 213 1.7E-24 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_3119 5ce28fed4b5352685c5d06b04d0bfb7f 261 SUPERFAMILY SSF53098 95 253 1.82E-32 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_2003 c61cae1a67200503155f08ffdef06d43 475 SUPERFAMILY SSF51366 280 473 4.39E-57 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 YP_2003 c61cae1a67200503155f08ffdef06d43 475 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 278 475 30.456 T 14-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 YP_2003 c61cae1a67200503155f08ffdef06d43 475 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 26 277 35.073 T 14-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 YP_2003 c61cae1a67200503155f08ffdef06d43 475 Gene3D G3DSA:3.20.20.70 31 278 6.3E-183 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_2003 c61cae1a67200503155f08ffdef06d43 475 SUPERFAMILY SSF51366 26 274 2.24E-83 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 YP_2003 c61cae1a67200503155f08ffdef06d43 475 Gene3D G3DSA:3.20.20.70 279 469 6.3E-183 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_2003 c61cae1a67200503155f08ffdef06d43 475 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 73 91 - T 14-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 YP_2003 c61cae1a67200503155f08ffdef06d43 475 Pfam PF00218 Indole-3-glycerol phosphate synthase 28 274 1.7E-95 T 14-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 YP_2003 c61cae1a67200503155f08ffdef06d43 475 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 280 471 6.6E-57 T 14-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 87 2.7E-21 T 14-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 Gene3D G3DSA:1.10.730.10 454 576 2.4E-32 T 14-10-2018 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 SUPERFAMILY SSF52374 109 454 1.48E-94 T 14-10-2018 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 SUPERFAMILY SSF55190 2 96 7.98E-22 T 14-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 Gene3D G3DSA:3.30.1360.70 1 106 5.1E-35 T 14-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 3 576 1.2E-203 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 SMART SM01016 5 87 8.0E-28 T 14-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 122 133 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 Pfam PF00750 tRNA synthetases class I (R) 102 446 2.6E-166 T 14-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 576 28.58 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 Pfam PF05746 DALR anticodon binding domain 460 576 7.2E-34 T 14-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 SUPERFAMILY SSF47323 454 576 2.94E-35 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 Gene3D G3DSA:3.40.50.620 108 453 3.3E-108 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 SMART SM00836 460 576 7.9E-37 T 14-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 129 145 1.5E-25 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 303 324 1.5E-25 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 114 129 1.5E-25 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 YP_1889 4d60d9ff956fea8111b1d278cf6fe334 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 153 166 1.5E-25 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 YP_3903 79ee599b5c8567c7d3bf9438f63c0273 70 PRINTS PR00050 Cold shock protein signature 7 22 1.8E-17 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_3903 79ee599b5c8567c7d3bf9438f63c0273 70 PRINTS PR00050 Cold shock protein signature 43 61 1.8E-17 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_3903 79ee599b5c8567c7d3bf9438f63c0273 70 PRINTS PR00050 Cold shock protein signature 28 37 1.8E-17 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_3903 79ee599b5c8567c7d3bf9438f63c0273 70 SMART SM00357 6 70 5.2E-31 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 YP_3903 79ee599b5c8567c7d3bf9438f63c0273 70 SUPERFAMILY SSF50249 3 69 5.49E-25 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_3903 79ee599b5c8567c7d3bf9438f63c0273 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 14-10-2018 IPR019844 Cold-shock conserved site YP_3903 79ee599b5c8567c7d3bf9438f63c0273 70 Gene3D G3DSA:2.40.50.140 2 69 3.4E-29 T 14-10-2018 YP_3903 79ee599b5c8567c7d3bf9438f63c0273 70 PIRSF PIRSF002599 1 70 1.3E-23 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 YP_3903 79ee599b5c8567c7d3bf9438f63c0273 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 2.1E-32 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1954 f46e0115302a122fd74da43ba59585b6 644 SUPERFAMILY SSF52540 75 368 1.97E-14 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1954 f46e0115302a122fd74da43ba59585b6 644 PIRSF PIRSF000549 1 644 3.0E-284 T 14-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 YP_1954 f46e0115302a122fd74da43ba59585b6 644 Pfam PF06798 PrkA serine protein kinase C-terminal domain 383 636 1.3E-72 T 14-10-2018 IPR010650 PrkA C-terminal domain YP_1954 f46e0115302a122fd74da43ba59585b6 644 SMART SM00763 19 380 2.8E-215 T 14-10-2018 IPR013153 PrkA AAA domain YP_1954 f46e0115302a122fd74da43ba59585b6 644 Pfam PF08298 PrkA AAA domain 20 380 7.3E-174 T 14-10-2018 IPR013153 PrkA AAA domain YP_2940 442894de4ecf0722638827a5ba1ae12e 410 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 240 264 9.6E-11 T 14-10-2018 YP_2940 442894de4ecf0722638827a5ba1ae12e 410 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 174 198 9.6E-11 T 14-10-2018 YP_2940 442894de4ecf0722638827a5ba1ae12e 410 Gene3D G3DSA:3.90.1150.10 51 382 3.8E-92 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_2940 442894de4ecf0722638827a5ba1ae12e 410 Gene3D G3DSA:3.40.640.10 74 296 3.8E-92 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_2940 442894de4ecf0722638827a5ba1ae12e 410 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 246 259 - T 14-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 YP_2940 442894de4ecf0722638827a5ba1ae12e 410 Pfam PF00155 Aminotransferase class I and II 55 394 2.9E-58 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YP_2940 442894de4ecf0722638827a5ba1ae12e 410 SUPERFAMILY SSF53383 50 398 7.89E-93 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 Gene3D G3DSA:3.30.450.20 16 148 3.6E-26 T 14-10-2018 YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 SUPERFAMILY SSF58104 216 426 2.75E-47 T 14-10-2018 YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 Pfam PF13426 PAS domain 24 126 1.7E-15 T 14-10-2018 IPR000014 PAS domain YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 141 254 6.3E-15 T 14-10-2018 IPR000014 PAS domain YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 22 132 9.8E-19 T 14-10-2018 IPR000014 PAS domain YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 SUPERFAMILY SSF55785 144 247 3.32E-22 T 14-10-2018 IPR035965 PAS domain superfamily YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 Gene3D G3DSA:1.10.287.950 244 430 6.7E-38 T 14-10-2018 YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 SMART SM00086 207 249 5.5E-4 T 14-10-2018 IPR001610 PAC motif YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 SMART SM00086 85 127 8.9E-7 T 14-10-2018 IPR001610 PAC motif YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 SUPERFAMILY SSF55785 23 124 1.47E-24 T 14-10-2018 IPR035965 PAS domain superfamily YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 Gene3D G3DSA:3.30.450.20 149 243 2.7E-17 T 14-10-2018 YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 SMART SM00283 238 428 4.9E-10 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 347 376 1.3E-15 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 318 345 1.3E-15 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 SMART SM00091 11 79 1.1 T 14-10-2018 IPR000014 PAS domain YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 SMART SM00091 132 199 0.0059 T 14-10-2018 IPR000014 PAS domain YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 Pfam PF08448 PAS fold 145 248 1.5E-12 T 14-10-2018 IPR013656 PAS fold-4 YP_2330 eec1f42dff83ae2e2e5c5e149a4426bd 430 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 267 426 4.7E-32 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YP_2748 b1805388a2a3012c6b3595b3a2747709 398 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 29 383 7.6E-171 T 14-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 YP_2748 b1805388a2a3012c6b3595b3a2747709 398 Gene3D G3DSA:1.10.150.530 1 92 7.2E-30 T 14-10-2018 YP_2748 b1805388a2a3012c6b3595b3a2747709 398 PIRSF PIRSF006004 24 391 5.1E-147 T 14-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 YP_2748 b1805388a2a3012c6b3595b3a2747709 398 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 31 378 74.814 T 14-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 YP_2748 b1805388a2a3012c6b3595b3a2747709 398 SUPERFAMILY SSF102114 130 348 5.1E-15 T 14-10-2018 YP_2748 b1805388a2a3012c6b3595b3a2747709 398 Gene3D G3DSA:3.20.20.70 93 363 1.9E-113 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_2748 b1805388a2a3012c6b3595b3a2747709 398 Pfam PF04055 Radical SAM superfamily 134 303 1.0E-17 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YP_0264 c7c66c01944f5c874cac0209a890ac50 278 Gene3D G3DSA:1.10.10.10 24 99 4.2E-27 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0264 c7c66c01944f5c874cac0209a890ac50 278 SMART SM00895 123 251 3.3E-19 T 14-10-2018 IPR011711 GntR, C-terminal YP_0264 c7c66c01944f5c874cac0209a890ac50 278 Pfam PF07729 FCD domain 123 250 1.1E-18 T 14-10-2018 IPR011711 GntR, C-terminal YP_0264 c7c66c01944f5c874cac0209a890ac50 278 Pfam PF00392 Bacterial regulatory proteins, gntR family 36 98 3.2E-22 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_0264 c7c66c01944f5c874cac0209a890ac50 278 SUPERFAMILY SSF46785 29 100 2.81E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0264 c7c66c01944f5c874cac0209a890ac50 278 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 72 3.4E-9 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_0264 c7c66c01944f5c874cac0209a890ac50 278 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 72 88 3.4E-9 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_0264 c7c66c01944f5c874cac0209a890ac50 278 Gene3D G3DSA:1.20.120.530 121 260 2.9E-29 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_0264 c7c66c01944f5c874cac0209a890ac50 278 SMART SM00345 39 98 1.6E-26 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_0264 c7c66c01944f5c874cac0209a890ac50 278 SUPERFAMILY SSF48008 119 259 1.44E-21 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_0265 1cf5b56431816599dd127d7942db9f2e 887 Gene3D G3DSA:3.40.50.970 472 706 2.9E-112 T 14-10-2018 YP_0265 1cf5b56431816599dd127d7942db9f2e 887 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 5 886 0.0 T 14-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 YP_0265 1cf5b56431816599dd127d7942db9f2e 887 Gene3D G3DSA:3.40.50.970 58 471 4.4E-136 T 14-10-2018 YP_0265 1cf5b56431816599dd127d7942db9f2e 887 SUPERFAMILY SSF52518 474 701 1.3E-99 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_0265 1cf5b56431816599dd127d7942db9f2e 887 SUPERFAMILY SSF52518 59 469 5.16E-144 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_0265 1cf5b56431816599dd127d7942db9f2e 887 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 362 450 1.9E-5 T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YP_0265 1cf5b56431816599dd127d7942db9f2e 887 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 109 294 2.7E-8 T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YP_0265 1cf5b56431816599dd127d7942db9f2e 887 PIRSF PIRSF000156 1 887 0.0 T 14-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 YP_0265 1cf5b56431816599dd127d7942db9f2e 887 Gene3D G3DSA:3.40.50.920 707 887 4.7E-74 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YP_0265 1cf5b56431816599dd127d7942db9f2e 887 SUPERFAMILY SSF52922 702 885 2.17E-62 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YP_0037 8e574f222ac27b6b76bb32cb52a595e8 693 SMART SM00487 265 459 5.3E-30 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_0037 8e574f222ac27b6b76bb32cb52a595e8 693 SUPERFAMILY SSF50249 9 176 4.97E-43 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_0037 8e574f222ac27b6b76bb32cb52a595e8 693 SUPERFAMILY SSF52540 292 653 5.91E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0037 8e574f222ac27b6b76bb32cb52a595e8 693 Gene3D G3DSA:3.40.50.300 208 450 1.2E-81 T 14-10-2018 YP_0037 8e574f222ac27b6b76bb32cb52a595e8 693 Pfam PF00270 DEAD/DEAH box helicase 271 431 6.8E-18 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YP_0037 8e574f222ac27b6b76bb32cb52a595e8 693 Pfam PF00271 Helicase conserved C-terminal domain 480 588 1.4E-16 T 14-10-2018 IPR001650 Helicase, C-terminal YP_0037 8e574f222ac27b6b76bb32cb52a595e8 693 Gene3D G3DSA:3.40.50.300 457 630 3.8E-50 T 14-10-2018 YP_0037 8e574f222ac27b6b76bb32cb52a595e8 693 Pfam PF17191 RecG wedge domain 14 172 5.5E-22 T 14-10-2018 IPR033454 RecG, wedge domain YP_0037 8e574f222ac27b6b76bb32cb52a595e8 693 Gene3D G3DSA:2.40.50.140 47 141 6.4E-14 T 14-10-2018 YP_0037 8e574f222ac27b6b76bb32cb52a595e8 693 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 28 664 4.2E-244 T 14-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 YP_0037 8e574f222ac27b6b76bb32cb52a595e8 693 SMART SM00490 505 589 1.5E-21 T 14-10-2018 IPR001650 Helicase, C-terminal YP_0037 8e574f222ac27b6b76bb32cb52a595e8 693 SUPERFAMILY SSF52540 208 453 2.13E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0311 41a0c80a095a7c77d980ba47b7d1c418 201 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 189 200 - T 14-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 YP_0311 41a0c80a095a7c77d980ba47b7d1c418 201 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 60 200 1.4E-30 T 14-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 YP_0311 41a0c80a095a7c77d980ba47b7d1c418 201 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 92 102 - T 14-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 YP_0311 41a0c80a095a7c77d980ba47b7d1c418 201 Gene3D G3DSA:2.60.40.200 47 201 5.2E-55 T 14-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 YP_0311 41a0c80a095a7c77d980ba47b7d1c418 201 SUPERFAMILY SSF49329 50 201 9.69E-50 T 14-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 SUPERFAMILY SSF48029 113 323 2.09E-63 T 14-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 SUPERFAMILY SSF48029 4 103 3.66E-21 T 14-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 113 136 1.2E-73 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 193 218 1.2E-73 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 246 266 1.2E-73 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 270 296 1.2E-73 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 3 19 1.2E-73 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 32 58 1.2E-73 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 224 244 1.2E-73 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 Gene3D G3DSA:1.10.220.30 193 329 1.3E-41 T 14-10-2018 YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 Pfam PF14841 FliG middle domain 114 186 7.0E-25 T 14-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 Pfam PF14842 FliG N-terminal domain 3 102 1.9E-31 T 14-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 Gene3D G3DSA:1.10.220.30 88 190 1.9E-26 T 14-10-2018 YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 2 330 1.5E-139 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 PIRSF PIRSF003161 1 330 1.6E-117 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 Gene3D G3DSA:1.10.220.30 1 79 2.7E-20 T 14-10-2018 YP_1563 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 Pfam PF01706 FliG C-terminal domain 216 322 4.5E-37 T 14-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal YP_3227 312b9c8622ad3bd447ac2937b4d60b1a 131 SUPERFAMILY SSF64307 44 127 3.4E-27 T 14-10-2018 IPR036868 TusA-like domain superfamily YP_3227 312b9c8622ad3bd447ac2937b4d60b1a 131 Hamap MF_00413 Sulfur carrier protein TusA [tusA]. 50 128 29.742 T 14-10-2018 IPR022931 Sulfur carrier protein TusA GO:0002143|GO:0097163 YP_3227 312b9c8622ad3bd447ac2937b4d60b1a 131 Gene3D G3DSA:3.30.110.40 47 127 1.7E-32 T 14-10-2018 IPR036868 TusA-like domain superfamily YP_3227 312b9c8622ad3bd447ac2937b4d60b1a 131 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 59 83 - T 14-10-2018 IPR001455 TusA-like domain YP_3227 312b9c8622ad3bd447ac2937b4d60b1a 131 Pfam PF01206 Sulfurtransferase TusA 57 126 5.9E-26 T 14-10-2018 IPR001455 TusA-like domain YP_pCD21 3b117dfa801139f967228decdcca8600 115 Gene3D G3DSA:3.30.1570.10 3 115 4.5E-29 T 14-10-2018 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily YP_pCD21 3b117dfa801139f967228decdcca8600 115 SUPERFAMILY SSF64449 1 111 5.49E-48 T 14-10-2018 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily YP_pCD21 3b117dfa801139f967228decdcca8600 115 Pfam PF09013 YopH, N-terminal 40 109 2.1E-11 T 14-10-2018 IPR015103 Protein-tyrosine phosphatase, YopH, N-terminal GO:0004725|GO:0006470|GO:0009405 YP_0221 211d9feed7e2d2f269ca9fd76d452cb0 130 Pfam PF00410 Ribosomal protein S8 5 129 1.7E-48 T 14-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0221 211d9feed7e2d2f269ca9fd76d452cb0 130 Gene3D G3DSA:3.30.1370.30 2 72 1.0E-27 T 14-10-2018 YP_0221 211d9feed7e2d2f269ca9fd76d452cb0 130 Gene3D G3DSA:3.30.1490.10 73 130 1.4E-25 T 14-10-2018 YP_0221 211d9feed7e2d2f269ca9fd76d452cb0 130 SUPERFAMILY SSF56047 5 129 2.09E-46 T 14-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0221 211d9feed7e2d2f269ca9fd76d452cb0 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 14-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0221 211d9feed7e2d2f269ca9fd76d452cb0 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 31.795 T 14-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_1212 15f6fb25679abe604749f7aefa02a433 265 PIRSF PIRSF000371 63 265 4.3E-44 T 14-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 YP_1212 15f6fb25679abe604749f7aefa02a433 265 PIRSF PIRSF000371 13 66 6.3E-12 T 14-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 YP_1212 15f6fb25679abe604749f7aefa02a433 265 SUPERFAMILY SSF102114 42 232 1.49E-22 T 14-10-2018 YP_1212 15f6fb25679abe604749f7aefa02a433 265 Pfam PF04055 Radical SAM superfamily 43 197 6.2E-31 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YP_1212 15f6fb25679abe604749f7aefa02a433 265 Gene3D G3DSA:3.20.20.70 21 265 1.0E-104 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_1212 15f6fb25679abe604749f7aefa02a433 265 ProSitePatterns PS01087 Radical activating enzymes signature. 37 58 - T 14-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 YP_1212 15f6fb25679abe604749f7aefa02a433 265 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 25 257 2.9E-106 T 14-10-2018 IPR012838 Pyruvate formate-lyase 1 activating enzyme GO:0043365|GO:0055114 YP_1212 15f6fb25679abe604749f7aefa02a433 265 Pfam PF13353 4Fe-4S single cluster domain 35 144 9.3E-18 T 14-10-2018 YP_4030 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 Gene3D G3DSA:1.20.150.20 383 513 2.5E-50 T 14-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4030 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 SUPERFAMILY SSF52540 96 381 1.32E-95 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_4030 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 SUPERFAMILY SSF47917 383 511 1.36E-45 T 14-10-2018 YP_4030 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 512 6.2E-261 T 14-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4030 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 6.3E-74 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_4030 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 SUPERFAMILY SSF50615 10 94 5.1E-26 T 14-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_4030 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_4030 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 50.111 T 14-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4030 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 Gene3D G3DSA:2.40.30.20 1 93 8.2E-30 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_4030 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 Gene3D G3DSA:3.40.50.300 94 382 6.8E-133 T 14-10-2018 YP_4030 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 2.4E-45 T 14-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4030 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 92 2.5E-13 T 14-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_3026 fb64a180825d21bb5640b68932004013 546 PRINTS PR01009 Flagellar M-ring protein signature 117 135 2.4E-25 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YP_3026 fb64a180825d21bb5640b68932004013 546 PRINTS PR01009 Flagellar M-ring protein signature 149 163 2.4E-25 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YP_3026 fb64a180825d21bb5640b68932004013 546 PRINTS PR01009 Flagellar M-ring protein signature 334 358 2.4E-25 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YP_3026 fb64a180825d21bb5640b68932004013 546 PRINTS PR01009 Flagellar M-ring protein signature 193 211 2.4E-25 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YP_3026 fb64a180825d21bb5640b68932004013 546 PRINTS PR01009 Flagellar M-ring protein signature 265 283 2.4E-25 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YP_3026 fb64a180825d21bb5640b68932004013 546 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 16 538 2.7E-59 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YP_3026 fb64a180825d21bb5640b68932004013 546 Pfam PF01514 Secretory protein of YscJ/FliF family 26 218 4.2E-58 T 14-10-2018 IPR006182 Secretory protein YscJ/FliF YP_3026 fb64a180825d21bb5640b68932004013 546 Gene3D G3DSA:3.30.300.30 115 221 5.8E-9 T 14-10-2018 YP_3026 fb64a180825d21bb5640b68932004013 546 PIRSF PIRSF004862 1 540 1.2E-107 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YP_3026 fb64a180825d21bb5640b68932004013 546 Pfam PF08345 Flagellar M-ring protein C-terminal 252 403 1.1E-35 T 14-10-2018 IPR013556 Flagellar M-ring C-terminal YP_1367 88a31fe297ed48e969dc2cbc4b85f156 727 Gene3D G3DSA:2.70.70.10 18 165 3.5E-13 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_1367 88a31fe297ed48e969dc2cbc4b85f156 727 SUPERFAMILY SSF51261 31 157 3.03E-7 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_1367 88a31fe297ed48e969dc2cbc4b85f156 727 Pfam PF01551 Peptidase family M23 42 155 9.3E-6 T 14-10-2018 IPR016047 Peptidase M23 YP_1367 88a31fe297ed48e969dc2cbc4b85f156 727 SUPERFAMILY SSF53955 482 568 7.87E-7 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_3589 3b54970bd404c6c409778fbf114993d0 193 SUPERFAMILY SSF52218 22 187 7.3E-46 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_3589 3b54970bd404c6c409778fbf114993d0 193 Gene3D G3DSA:3.40.50.360 22 192 7.0E-48 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_3589 3b54970bd404c6c409778fbf114993d0 193 PIRSF PIRSF038996 21 192 4.5E-55 T 14-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 YP_3589 3b54970bd404c6c409778fbf114993d0 193 Pfam PF00258 Flavodoxin 26 181 7.1E-27 T 14-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 YP_3589 3b54970bd404c6c409778fbf114993d0 193 TIGRFAM TIGR01752 flav_long: flavodoxin 23 189 3.8E-73 T 14-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 YP_3589 3b54970bd404c6c409778fbf114993d0 193 ProSitePatterns PS00201 Flavodoxin signature. 26 42 - T 14-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 YP_0222 094b25a8e5a03f5cf60c4282e3fe4213 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 1.8E-33 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 YP_0222 094b25a8e5a03f5cf60c4282e3fe4213 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 1.8E-33 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 YP_0222 094b25a8e5a03f5cf60c4282e3fe4213 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 1.8E-33 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 YP_0222 094b25a8e5a03f5cf60c4282e3fe4213 177 SUPERFAMILY SSF56053 1 82 1.11E-23 T 14-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0222 094b25a8e5a03f5cf60c4282e3fe4213 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 1.7E-73 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 YP_0222 094b25a8e5a03f5cf60c4282e3fe4213 177 PIRSF PIRSF002162 1 177 2.4E-44 T 14-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0222 094b25a8e5a03f5cf60c4282e3fe4213 177 Gene3D G3DSA:3.90.930.12 1 82 1.3E-30 T 14-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0222 094b25a8e5a03f5cf60c4282e3fe4213 177 Pfam PF00347 Ribosomal protein L6 90 164 6.6E-19 T 14-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0222 094b25a8e5a03f5cf60c4282e3fe4213 177 Pfam PF00347 Ribosomal protein L6 11 82 2.3E-19 T 14-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0222 094b25a8e5a03f5cf60c4282e3fe4213 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.759 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 YP_0222 094b25a8e5a03f5cf60c4282e3fe4213 177 SUPERFAMILY SSF56053 83 177 9.08E-36 T 14-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0222 094b25a8e5a03f5cf60c4282e3fe4213 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 14-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0222 094b25a8e5a03f5cf60c4282e3fe4213 177 Gene3D G3DSA:3.90.930.12 83 177 9.7E-40 T 14-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0174 677797853f26d0ffd9d0cda9ef8774c2 210 Pfam PF00325 Bacterial regulatory proteins, crp family 166 197 1.8E-15 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 YP_0174 677797853f26d0ffd9d0cda9ef8774c2 210 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 30 46 - T 14-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site YP_0174 677797853f26d0ffd9d0cda9ef8774c2 210 SUPERFAMILY SSF51206 8 136 1.23E-35 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like YP_0174 677797853f26d0ffd9d0cda9ef8774c2 210 SMART SM00419 160 208 4.5E-17 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 YP_0174 677797853f26d0ffd9d0cda9ef8774c2 210 Gene3D G3DSA:1.10.10.10 139 207 1.3E-35 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0174 677797853f26d0ffd9d0cda9ef8774c2 210 ProSitePatterns PS00042 Crp-type HTH domain signature. 168 191 - T 14-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 YP_0174 677797853f26d0ffd9d0cda9ef8774c2 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 166 182 8.8E-11 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 YP_0174 677797853f26d0ffd9d0cda9ef8774c2 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 182 197 8.8E-11 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 YP_0174 677797853f26d0ffd9d0cda9ef8774c2 210 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 71 89 - T 14-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site YP_0174 677797853f26d0ffd9d0cda9ef8774c2 210 SMART SM00100 2 122 1.1E-26 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain YP_0174 677797853f26d0ffd9d0cda9ef8774c2 210 Pfam PF00027 Cyclic nucleotide-binding domain 23 109 6.5E-24 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain YP_0174 677797853f26d0ffd9d0cda9ef8774c2 210 SUPERFAMILY SSF46785 139 207 3.64E-16 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0174 677797853f26d0ffd9d0cda9ef8774c2 210 Gene3D G3DSA:2.60.120.10 10 138 6.9E-45 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 Hamap MF_01588 DNA ligase [ligA]. 2 668 54.405 T 14-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 SMART SM00278 480 499 0.79 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 SMART SM00278 512 531 200.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 SMART SM00278 446 465 17.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 SMART SM00278 544 563 38.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 115 144 - T 14-10-2018 IPR018239 NAD-dependent DNA ligase, active site YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 PIRSF PIRSF001604 1 670 3.1E-262 T 14-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 Gene3D G3DSA:1.10.287.610 1 69 1.3E-30 T 14-10-2018 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 SUPERFAMILY SSF56091 2 316 4.32E-124 T 14-10-2018 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 Gene3D G3DSA:2.20.70.80 391 431 5.5E-21 T 14-10-2018 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 Gene3D G3DSA:1.10.150.20 506 585 1.2E-29 T 14-10-2018 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 SUPERFAMILY SSF52113 592 668 2.45E-19 T 14-10-2018 IPR036420 BRCT domain superfamily YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 SMART SM00292 594 669 2.1E-12 T 14-10-2018 IPR001357 BRCT domain YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 Gene3D G3DSA:1.10.150.20 432 505 1.9E-30 T 14-10-2018 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 11 664 7.1E-274 T 14-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 595 667 3.3E-13 T 14-10-2018 IPR001357 BRCT domain YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 SMART SM00532 3 448 4.0E-286 T 14-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 331 346 - T 14-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 SUPERFAMILY SSF50249 318 400 1.88E-29 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 Pfam PF14520 Helix-hairpin-helix domain 446 502 3.2E-6 T 14-10-2018 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 Gene3D G3DSA:3.30.1490.70 78 316 3.8E-103 T 14-10-2018 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 322 398 1.8E-36 T 14-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 Gene3D G3DSA:3.30.470.30 70 253 3.8E-103 T 14-10-2018 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 Pfam PF12826 Helix-hairpin-helix motif 510 573 1.3E-23 T 14-10-2018 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 SUPERFAMILY SSF47781 404 578 1.37E-61 T 14-10-2018 IPR010994 RuvA domain 2-like YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 407 434 1.4E-10 T 14-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 4 318 2.5E-138 T 14-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 Gene3D G3DSA:3.40.50.10190 591 670 5.9E-26 T 14-10-2018 IPR036420 BRCT domain superfamily YP_2614 d85fa24102deef57e854ed4a669e8b2a 670 Gene3D G3DSA:2.40.50.140 317 390 1.7E-34 T 14-10-2018 YP_3627 e77f27c48517e610b44ee7374fded134 306 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 4 305 1.7E-110 T 14-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3627 e77f27c48517e610b44ee7374fded134 306 SUPERFAMILY SSF52440 3 96 2.97E-29 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YP_3627 e77f27c48517e610b44ee7374fded134 306 Pfam PF07478 D-ala D-ala ligase C-terminus 103 302 1.1E-68 T 14-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3627 e77f27c48517e610b44ee7374fded134 306 Gene3D G3DSA:3.30.1490.20 111 183 2.3E-89 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YP_3627 e77f27c48517e610b44ee7374fded134 306 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 3 306 37.037 T 14-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3627 e77f27c48517e610b44ee7374fded134 306 Pfam PF01820 D-ala D-ala ligase N-terminus 4 86 6.1E-18 T 14-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3627 e77f27c48517e610b44ee7374fded134 306 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 63 74 - T 14-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3627 e77f27c48517e610b44ee7374fded134 306 PIRSF PIRSF039102 41 306 2.5E-93 T 14-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3627 e77f27c48517e610b44ee7374fded134 306 PIRSF PIRSF039102 1 46 2.4E-7 T 14-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3627 e77f27c48517e610b44ee7374fded134 306 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 248 276 - T 14-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3627 e77f27c48517e610b44ee7374fded134 306 Gene3D G3DSA:3.40.50.20 1 84 7.2E-33 T 14-10-2018 YP_3627 e77f27c48517e610b44ee7374fded134 306 Gene3D G3DSA:3.30.470.20 85 301 2.3E-89 T 14-10-2018 YP_3627 e77f27c48517e610b44ee7374fded134 306 SUPERFAMILY SSF56059 97 302 3.54E-62 T 14-10-2018 YP_0801 2fdd02605cb6e751036b20f33eff01fb 117 Pfam PF02635 DsrE/DsrF-like family 3 117 8.4E-21 T 14-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein YP_0801 2fdd02605cb6e751036b20f33eff01fb 117 SUPERFAMILY SSF75169 1 117 7.07E-33 T 14-10-2018 IPR027396 DsrEFH-like YP_0801 2fdd02605cb6e751036b20f33eff01fb 117 Gene3D G3DSA:3.40.1260.10 2 117 1.2E-31 T 14-10-2018 IPR027396 DsrEFH-like YP_1204 597e97a337dfb6c9fb7a1dd650effca8 315 SUPERFAMILY SSF53383 2 313 3.74E-98 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_1204 597e97a337dfb6c9fb7a1dd650effca8 315 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 142 161 - T 14-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YP_1204 597e97a337dfb6c9fb7a1dd650effca8 315 PIRSF PIRSF000525 1 315 4.7E-129 T 14-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 YP_1204 597e97a337dfb6c9fb7a1dd650effca8 315 Gene3D G3DSA:3.40.640.10 3 212 7.7E-131 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_1204 597e97a337dfb6c9fb7a1dd650effca8 315 Gene3D G3DSA:3.90.1150.10 213 311 7.7E-131 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_1204 597e97a337dfb6c9fb7a1dd650effca8 315 Pfam PF00266 Aminotransferase class-V 2 303 3.2E-55 T 14-10-2018 IPR000192 Aminotransferase class V domain YP_1204 597e97a337dfb6c9fb7a1dd650effca8 315 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 1 314 40.015 T 14-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 YP_1204 597e97a337dfb6c9fb7a1dd650effca8 315 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 2 314 2.9E-134 T 14-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 YP_0774 362ac2313fc273dfaa85f46876b919bc 207 Pfam PF00574 Clp protease 25 205 2.1E-88 T 14-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA YP_0774 362ac2313fc273dfaa85f46876b919bc 207 SUPERFAMILY SSF52096 23 206 8.08E-74 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YP_0774 362ac2313fc273dfaa85f46876b919bc 207 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 14 205 1.5E-108 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 YP_0774 362ac2313fc273dfaa85f46876b919bc 207 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 103 114 - T 14-10-2018 IPR018215 ClpP, Ser active site YP_0774 362ac2313fc273dfaa85f46876b919bc 207 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 16 206 43.839 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 YP_0774 362ac2313fc273dfaa85f46876b919bc 207 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 125 138 - T 14-10-2018 IPR033135 ClpP, histidine active site YP_0774 362ac2313fc273dfaa85f46876b919bc 207 PRINTS PR00127 Clp protease catalytic subunit P signature 72 92 2.4E-52 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 YP_0774 362ac2313fc273dfaa85f46876b919bc 207 PRINTS PR00127 Clp protease catalytic subunit P signature 181 200 2.4E-52 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 YP_0774 362ac2313fc273dfaa85f46876b919bc 207 PRINTS PR00127 Clp protease catalytic subunit P signature 103 120 2.4E-52 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 YP_0774 362ac2313fc273dfaa85f46876b919bc 207 PRINTS PR00127 Clp protease catalytic subunit P signature 124 143 2.4E-52 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 YP_0774 362ac2313fc273dfaa85f46876b919bc 207 PRINTS PR00127 Clp protease catalytic subunit P signature 32 47 2.4E-52 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 YP_0774 362ac2313fc273dfaa85f46876b919bc 207 Gene3D G3DSA:3.90.226.10 6 207 8.2E-84 T 14-10-2018 YP_2017 29669d9323916383dd3b788b36c3472c 324 Gene3D G3DSA:1.10.10.10 1 86 1.1E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2017 29669d9323916383dd3b788b36c3472c 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.7E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2017 29669d9323916383dd3b788b36c3472c 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.7E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2017 29669d9323916383dd3b788b36c3472c 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.7E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2017 29669d9323916383dd3b788b36c3472c 324 Gene3D G3DSA:3.40.190.10 92 303 1.1E-99 T 14-10-2018 YP_2017 29669d9323916383dd3b788b36c3472c 324 Gene3D G3DSA:3.40.190.10 167 267 1.1E-99 T 14-10-2018 YP_2017 29669d9323916383dd3b788b36c3472c 324 SUPERFAMILY SSF46785 1 85 7.39E-13 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_2017 29669d9323916383dd3b788b36c3472c 324 SUPERFAMILY SSF53850 91 322 2.27E-43 T 14-10-2018 YP_2017 29669d9323916383dd3b788b36c3472c 324 Pfam PF03466 LysR substrate binding domain 92 288 1.7E-40 T 14-10-2018 IPR005119 LysR, substrate-binding YP_2017 29669d9323916383dd3b788b36c3472c 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 1.4E-14 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_0108 8c365328ba9c7eae960124b5ef956073 174 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 172 41.7 T 14-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 YP_0108 8c365328ba9c7eae960124b5ef956073 174 Pfam PF00227 Proteasome subunit 2 165 2.0E-21 T 14-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 YP_0108 8c365328ba9c7eae960124b5ef956073 174 Gene3D G3DSA:3.60.20.10 1 173 5.3E-67 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YP_0108 8c365328ba9c7eae960124b5ef956073 174 PIRSF PIRSF039093 1 174 3.0E-87 T 14-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 YP_0108 8c365328ba9c7eae960124b5ef956073 174 SUPERFAMILY SSF56235 2 172 7.73E-58 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YP_0108 8c365328ba9c7eae960124b5ef956073 174 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 172 2.2E-86 T 14-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 YP_3186 f92dc622fd8b706719b883b2e78b55bf 401 PIRSF PIRSF000390 23 401 1.2E-116 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YP_3186 f92dc622fd8b706719b883b2e78b55bf 401 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 39 396 1.3E-83 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YP_3186 f92dc622fd8b706719b883b2e78b55bf 401 Gene3D G3DSA:3.40.640.10 25 274 8.4E-84 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_3186 f92dc622fd8b706719b883b2e78b55bf 401 Hamap MF_02026 dTDP-4-amino-4,6-dideoxygalactose transaminase [wecE]. 26 401 79.952 T 14-10-2018 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE GO:0009246|GO:0019180 MetaCyc: PWY-7315 YP_3186 f92dc622fd8b706719b883b2e78b55bf 401 SUPERFAMILY SSF53383 27 399 2.86E-101 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_3186 f92dc622fd8b706719b883b2e78b55bf 401 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 26 400 3.3E-211 T 14-10-2018 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 YP_3186 f92dc622fd8b706719b883b2e78b55bf 401 Gene3D G3DSA:3.90.1150.10 275 401 1.2E-24 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 SUPERFAMILY SSF55785 24 136 1.61E-19 T 14-10-2018 IPR035965 PAS domain superfamily YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 528 691 2.9E-42 T 14-10-2018 IPR000160 GGDEF domain YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 Pfam PF00990 Diguanylate cyclase, GGDEF domain 532 688 5.3E-44 T 14-10-2018 IPR000160 GGDEF domain YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 Gene3D G3DSA:3.30.70.270 521 693 2.7E-52 T 14-10-2018 YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 Pfam PF00989 PAS fold 403 518 6.8E-14 T 14-10-2018 IPR013767 PAS fold GO:0006355 YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 SMART SM00086 85 127 7.1 T 14-10-2018 IPR001610 PAC motif YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 SMART SM00086 479 521 54.0 T 14-10-2018 IPR001610 PAC motif YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 SMART SM00086 341 383 0.021 T 14-10-2018 IPR001610 PAC motif YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 SMART SM00086 213 255 0.33 T 14-10-2018 IPR001610 PAC motif YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 Gene3D G3DSA:3.30.450.20 395 519 1.1E-22 T 14-10-2018 YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 SUPERFAMILY SSF55073 537 690 2.28E-44 T 14-10-2018 IPR029787 Nucleotide cyclase YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 SUPERFAMILY SSF55785 251 377 1.92E-25 T 14-10-2018 IPR035965 PAS domain superfamily YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 399 528 5.0E-15 T 14-10-2018 IPR000014 PAS domain YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 265 390 2.9E-16 T 14-10-2018 IPR000014 PAS domain YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 12 133 7.0E-17 T 14-10-2018 IPR000014 PAS domain YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 135 262 8.2E-21 T 14-10-2018 IPR000014 PAS domain YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 Pfam PF13426 PAS domain 151 254 1.6E-13 T 14-10-2018 IPR000014 PAS domain YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 Pfam PF13426 PAS domain 24 126 8.9E-11 T 14-10-2018 IPR000014 PAS domain YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 Pfam PF13426 PAS domain 279 382 2.3E-9 T 14-10-2018 IPR000014 PAS domain YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 SUPERFAMILY SSF55785 380 519 2.79E-20 T 14-10-2018 IPR035965 PAS domain superfamily YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 SUPERFAMILY SSF55785 123 250 1.74E-24 T 14-10-2018 IPR035965 PAS domain superfamily YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 SMART SM00267 521 692 8.8E-54 T 14-10-2018 IPR000160 GGDEF domain YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 Gene3D G3DSA:3.30.450.20 8 140 4.9E-24 T 14-10-2018 YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 SMART SM00091 139 208 6.4E-4 T 14-10-2018 IPR000014 PAS domain YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 SMART SM00091 11 80 5.7E-5 T 14-10-2018 IPR000014 PAS domain YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 SMART SM00091 402 468 1.3E-8 T 14-10-2018 IPR000014 PAS domain YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 SMART SM00091 267 335 1.2 T 14-10-2018 IPR000014 PAS domain YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 Gene3D G3DSA:3.30.450.20 141 266 9.0E-27 T 14-10-2018 YP_1490 ce6005242a8c4fb8eb20689c98558b4d 693 Gene3D G3DSA:3.30.450.20 267 394 6.4E-24 T 14-10-2018 YP_3304 8d75be2bd095ac380c1856f835d610ea 727 PIRSF PIRSF000463 6 727 2.9E-286 T 14-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 YP_3304 8d75be2bd095ac380c1856f835d610ea 727 SUPERFAMILY SSF81296 117 223 1.28E-36 T 14-10-2018 IPR014756 Immunoglobulin E-set YP_3304 8d75be2bd095ac380c1856f835d610ea 727 SMART SM00642 247 596 8.8E-7 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YP_3304 8d75be2bd095ac380c1856f835d610ea 727 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 125 207 1.7E-25 T 14-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 YP_3304 8d75be2bd095ac380c1856f835d610ea 727 SUPERFAMILY SSF51445 233 620 5.07E-114 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_3304 8d75be2bd095ac380c1856f835d610ea 727 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 109 723 5.7E-301 T 14-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 YP_3304 8d75be2bd095ac380c1856f835d610ea 727 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 101 726 43.934 T 14-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 YP_3304 8d75be2bd095ac380c1856f835d610ea 727 SUPERFAMILY SSF51011 623 726 8.51E-34 T 14-10-2018 YP_3304 8d75be2bd095ac380c1856f835d610ea 727 SUPERFAMILY SSF81296 16 115 1.36E-16 T 14-10-2018 IPR014756 Immunoglobulin E-set YP_3304 8d75be2bd095ac380c1856f835d610ea 727 Gene3D G3DSA:2.60.40.1180 623 727 5.0E-38 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta YP_3304 8d75be2bd095ac380c1856f835d610ea 727 Gene3D G3DSA:3.20.20.80 231 612 1.7E-173 T 14-10-2018 YP_3304 8d75be2bd095ac380c1856f835d610ea 727 Pfam PF00128 Alpha amylase, catalytic domain 273 347 6.6E-10 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YP_3304 8d75be2bd095ac380c1856f835d610ea 727 Gene3D G3DSA:2.60.40.10 2 221 7.9E-79 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3304 8d75be2bd095ac380c1856f835d610ea 727 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 628 724 2.2E-20 T 14-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 YP_1749 70e80eb176a0437ba0e83fff8c7593f1 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 192 5.1E-41 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1749 70e80eb176a0437ba0e83fff8c7593f1 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 27 44 5.1E-41 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1749 70e80eb176a0437ba0e83fff8c7593f1 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 229 249 5.1E-41 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1749 70e80eb176a0437ba0e83fff8c7593f1 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 211 5.1E-41 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1749 70e80eb176a0437ba0e83fff8c7593f1 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 99 110 5.1E-41 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1749 70e80eb176a0437ba0e83fff8c7593f1 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 163 5.1E-41 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1749 70e80eb176a0437ba0e83fff8c7593f1 268 SUPERFAMILY SSF51735 24 267 4.44E-78 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1749 70e80eb176a0437ba0e83fff8c7593f1 268 Gene3D G3DSA:3.40.50.720 16 268 6.1E-83 T 14-10-2018 YP_1749 70e80eb176a0437ba0e83fff8c7593f1 268 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 21 268 3.4E-136 T 14-10-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.127|MetaCyc: PWY-6507|MetaCyc: PWY-7562 YP_1749 70e80eb176a0437ba0e83fff8c7593f1 268 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 160 188 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YP_1749 70e80eb176a0437ba0e83fff8c7593f1 268 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 35 265 2.7E-58 T 14-10-2018 YP_1749 70e80eb176a0437ba0e83fff8c7593f1 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 161 1.3E-13 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1749 70e80eb176a0437ba0e83fff8c7593f1 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 173 192 1.3E-13 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1749 70e80eb176a0437ba0e83fff8c7593f1 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 99 110 1.3E-13 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0581 ba249a68c457db1214551d45a6f6809e 647 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 191 323 6.5E-46 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_0581 ba249a68c457db1214551d45a6f6809e 647 Gene3D G3DSA:3.40.50.300 144 323 1.4E-70 T 14-10-2018 YP_0581 ba249a68c457db1214551d45a6f6809e 647 Pfam PF06480 FtsH Extracellular 8 96 9.8E-15 T 14-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 YP_0581 ba249a68c457db1214551d45a6f6809e 647 SMART SM00382 187 326 1.9E-26 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0581 ba249a68c457db1214551d45a6f6809e 647 ProSitePatterns PS00674 AAA-protein family signature. 294 312 - T 14-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 YP_0581 ba249a68c457db1214551d45a6f6809e 647 Gene3D G3DSA:1.20.58.760 400 603 2.9E-69 T 14-10-2018 YP_0581 ba249a68c457db1214551d45a6f6809e 647 Pfam PF01434 Peptidase family M41 385 594 1.1E-81 T 14-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 YP_0581 ba249a68c457db1214551d45a6f6809e 647 SUPERFAMILY SSF52540 145 394 6.57E-73 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0581 ba249a68c457db1214551d45a6f6809e 647 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 103 596 3.7E-247 T 14-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 YP_0581 ba249a68c457db1214551d45a6f6809e 647 Gene3D G3DSA:1.10.8.60 325 399 1.1E-28 T 14-10-2018 YP_0581 ba249a68c457db1214551d45a6f6809e 647 Gene3D G3DSA:2.40.50.920 27 102 6.6E-36 T 14-10-2018 YP_0581 ba249a68c457db1214551d45a6f6809e 647 SUPERFAMILY SSF140990 405 604 3.14E-72 T 14-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 YP_0581 ba249a68c457db1214551d45a6f6809e 647 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 619 37.379 T 14-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 YP_1272 32e451d68fdb81aaa9cddfcd197ac3b4 432 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 156 173 1.7E-17 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YP_1272 32e451d68fdb81aaa9cddfcd197ac3b4 432 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 183 196 1.7E-17 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YP_1272 32e451d68fdb81aaa9cddfcd197ac3b4 432 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 97 108 1.7E-17 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YP_1272 32e451d68fdb81aaa9cddfcd197ac3b4 432 SMART SM00936 317 408 6.2E-31 T 14-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_1272 32e451d68fdb81aaa9cddfcd197ac3b4 432 Gene3D G3DSA:2.60.410.10 317 408 1.3E-26 T 14-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_1272 32e451d68fdb81aaa9cddfcd197ac3b4 432 Gene3D G3DSA:3.40.710.10 58 316 5.6E-92 T 14-10-2018 YP_1272 32e451d68fdb81aaa9cddfcd197ac3b4 432 SUPERFAMILY SSF56601 40 317 4.92E-83 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YP_1272 32e451d68fdb81aaa9cddfcd197ac3b4 432 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 317 408 1.9E-21 T 14-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_1272 32e451d68fdb81aaa9cddfcd197ac3b4 432 SUPERFAMILY SSF69189 317 410 2.94E-24 T 14-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_1272 32e451d68fdb81aaa9cddfcd197ac3b4 432 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 65 297 1.5E-97 T 14-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 YP_1983 957f9b9ebfb489a97adc024be211b7b1 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 241 328 1.3E-29 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YP_1983 957f9b9ebfb489a97adc024be211b7b1 333 SMART SM00382 48 241 4.1E-18 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1983 957f9b9ebfb489a97adc024be211b7b1 333 Gene3D G3DSA:3.40.50.300 8 332 4.3E-97 T 14-10-2018 YP_1983 957f9b9ebfb489a97adc024be211b7b1 333 SUPERFAMILY SSF52540 22 263 5.45E-74 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1983 957f9b9ebfb489a97adc024be211b7b1 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 243 310 6.1E-18 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YP_1983 957f9b9ebfb489a97adc024be211b7b1 333 Pfam PF00005 ABC transporter 40 191 5.8E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1983 957f9b9ebfb489a97adc024be211b7b1 333 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2806 0f19abe77aa2614b06a5aa4fcab3bdac 285 Gene3D G3DSA:3.30.479.20 57 143 1.6E-30 T 14-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 YP_2806 0f19abe77aa2614b06a5aa4fcab3bdac 285 Hamap MF_00050 Elongation factor Ts [tsf]. 1 282 80.24 T 14-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YP_2806 0f19abe77aa2614b06a5aa4fcab3bdac 285 Gene3D G3DSA:1.10.286.20 189 228 6.3E-23 T 14-10-2018 YP_2806 0f19abe77aa2614b06a5aa4fcab3bdac 285 ProSitePatterns PS01127 Elongation factor Ts signature 2. 77 87 - T 14-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YP_2806 0f19abe77aa2614b06a5aa4fcab3bdac 285 SUPERFAMILY SSF54713 56 141 7.63E-22 T 14-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 YP_2806 0f19abe77aa2614b06a5aa4fcab3bdac 285 Pfam PF00889 Elongation factor TS 73 265 1.1E-67 T 14-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 YP_2806 0f19abe77aa2614b06a5aa4fcab3bdac 285 Gene3D G3DSA:1.10.8.10 1 56 1.7E-25 T 14-10-2018 YP_2806 0f19abe77aa2614b06a5aa4fcab3bdac 285 SUPERFAMILY SSF54713 144 283 3.79E-53 T 14-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 YP_2806 0f19abe77aa2614b06a5aa4fcab3bdac 285 SUPERFAMILY SSF46934 4 55 4.68E-18 T 14-10-2018 IPR009060 UBA-like superfamily GO:0005515 YP_2806 0f19abe77aa2614b06a5aa4fcab3bdac 285 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 284 5.1E-116 T 14-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 Gene3D G3DSA:1.10.1780.10 2 161 5.8E-44 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 783 860 3.4E-13 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 12 864 0.0 T 14-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 SUPERFAMILY SSF52540 196 530 3.35E-69 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 239 351 1.1E-9 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 SUPERFAMILY SSF52540 560 852 2.78E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 SMART SM01086 782 875 1.4E-10 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 Gene3D G3DSA:1.10.8.60 782 876 2.8E-12 T 14-10-2018 YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 660 678 3.2E-32 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 722 736 3.2E-32 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 615 633 3.2E-32 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 689 707 3.2E-32 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 Gene3D G3DSA:3.40.50.300 564 780 8.1E-66 T 14-10-2018 YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 Gene3D G3DSA:3.40.50.300 380 558 1.1E-41 T 14-10-2018 YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 Gene3D G3DSA:3.40.50.300 186 378 7.7E-63 T 14-10-2018 YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 SMART SM00382 234 379 6.7E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 SMART SM00382 611 762 3.0E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 Pfam PF07724 AAA domain (Cdc48 subfamily) 611 775 3.2E-38 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 330 342 - T 14-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 YP_3467 3ec46b1f7f35c0a4c3ded9fd8f93c142 882 SUPERFAMILY SSF81923 12 127 1.23E-16 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YP_2407 36d3be2e5baab1e35dbfb7331105eb26 689 Pfam PF01266 FAD dependent oxidoreductase 266 644 3.1E-55 T 14-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 YP_2407 36d3be2e5baab1e35dbfb7331105eb26 689 Gene3D G3DSA:3.30.9.10 351 574 1.8E-153 T 14-10-2018 YP_2407 36d3be2e5baab1e35dbfb7331105eb26 689 SUPERFAMILY SSF53335 138 242 4.32E-5 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_2407 36d3be2e5baab1e35dbfb7331105eb26 689 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 118 244 1.5E-49 T 14-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 YP_2407 36d3be2e5baab1e35dbfb7331105eb26 689 Gene3D G3DSA:3.40.50.150 9 251 1.0E-108 T 14-10-2018 YP_2407 36d3be2e5baab1e35dbfb7331105eb26 689 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 266 674 4.3E-157 T 14-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 YP_2407 36d3be2e5baab1e35dbfb7331105eb26 689 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 7 669 28.253 T 14-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 YP_2407 36d3be2e5baab1e35dbfb7331105eb26 689 Gene3D G3DSA:3.50.50.60 267 671 1.8E-153 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2407 36d3be2e5baab1e35dbfb7331105eb26 689 SUPERFAMILY SSF51905 266 673 2.07E-30 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_1043 e21933b9adfa4f9a1fecfdcfbb1971f0 935 SUPERFAMILY SSF52518 576 793 7.23E-51 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_1043 e21933b9adfa4f9a1fecfdcfbb1971f0 935 Pfam PF02779 Transketolase, pyrimidine binding domain 592 787 2.4E-65 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain YP_1043 e21933b9adfa4f9a1fecfdcfbb1971f0 935 Gene3D G3DSA:1.10.287.1150 84 166 3.7E-30 T 14-10-2018 YP_1043 e21933b9adfa4f9a1fecfdcfbb1971f0 935 SUPERFAMILY SSF52518 120 541 3.2E-88 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_1043 e21933b9adfa4f9a1fecfdcfbb1971f0 935 Gene3D G3DSA:3.40.50.11610 723 929 6.3E-172 T 14-10-2018 YP_1043 e21933b9adfa4f9a1fecfdcfbb1971f0 935 SMART SM00861 593 786 9.2E-62 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain YP_1043 e21933b9adfa4f9a1fecfdcfbb1971f0 935 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 790 932 9.2E-53 T 14-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 YP_1043 e21933b9adfa4f9a1fecfdcfbb1971f0 935 Gene3D G3DSA:3.40.50.970 167 533 4.1E-148 T 14-10-2018 YP_1043 e21933b9adfa4f9a1fecfdcfbb1971f0 935 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 49 1.8E-16 T 14-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 YP_1043 e21933b9adfa4f9a1fecfdcfbb1971f0 935 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 14 932 0.0 T 14-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 YP_1043 e21933b9adfa4f9a1fecfdcfbb1971f0 935 PIRSF PIRSF000157 1 934 0.0 T 14-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 YP_1043 e21933b9adfa4f9a1fecfdcfbb1971f0 935 Pfam PF00676 Dehydrogenase E1 component 223 514 1.2E-50 T 14-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 YP_1043 e21933b9adfa4f9a1fecfdcfbb1971f0 935 Gene3D G3DSA:3.40.50.12470 556 802 6.3E-172 T 14-10-2018 YP_3516 aada8f5f87fffd9fcf472010b6138a40 664 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 334 1.3E-170 T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YP_3516 aada8f5f87fffd9fcf472010b6138a40 664 SUPERFAMILY SSF52922 533 664 8.25E-45 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YP_3516 aada8f5f87fffd9fcf472010b6138a40 664 Gene3D G3DSA:3.40.50.970 1 326 8.0E-136 T 14-10-2018 YP_3516 aada8f5f87fffd9fcf472010b6138a40 664 Gene3D G3DSA:3.40.50.920 538 664 4.4E-44 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YP_3516 aada8f5f87fffd9fcf472010b6138a40 664 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 14-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YP_3516 aada8f5f87fffd9fcf472010b6138a40 664 Pfam PF02779 Transketolase, pyrimidine binding domain 355 524 1.8E-46 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain YP_3516 aada8f5f87fffd9fcf472010b6138a40 664 SUPERFAMILY SSF52518 334 526 1.36E-69 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_3516 aada8f5f87fffd9fcf472010b6138a40 664 Pfam PF02780 Transketolase, C-terminal domain 540 655 5.9E-20 T 14-10-2018 IPR033248 Transketolase, C-terminal domain YP_3516 aada8f5f87fffd9fcf472010b6138a40 664 SMART SM00861 355 525 1.5E-68 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain YP_3516 aada8f5f87fffd9fcf472010b6138a40 664 TIGRFAM TIGR00232 tktlase_bact: transketolase 5 663 0.0 T 14-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 YP_3516 aada8f5f87fffd9fcf472010b6138a40 664 Gene3D G3DSA:3.40.50.970 327 537 6.9E-85 T 14-10-2018 YP_3516 aada8f5f87fffd9fcf472010b6138a40 664 SUPERFAMILY SSF52518 5 321 1.23E-120 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_3516 aada8f5f87fffd9fcf472010b6138a40 664 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YP_0397 4ae35a30e1ded65e15feee436fd6a029 257 SMART SM00850 161 255 4.1E-23 T 14-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 YP_0397 4ae35a30e1ded65e15feee436fd6a029 257 SUPERFAMILY SSF52172 20 143 8.54E-33 T 14-10-2018 IPR011006 CheY-like superfamily YP_0397 4ae35a30e1ded65e15feee436fd6a029 257 Gene3D G3DSA:3.40.50.2300 19 146 1.6E-31 T 14-10-2018 YP_0397 4ae35a30e1ded65e15feee436fd6a029 257 Gene3D G3DSA:2.40.50.1020 153 255 9.9E-12 T 14-10-2018 YP_0397 4ae35a30e1ded65e15feee436fd6a029 257 Pfam PF04397 LytTr DNA-binding domain 162 254 1.5E-24 T 14-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 YP_0397 4ae35a30e1ded65e15feee436fd6a029 257 SMART SM00448 21 131 1.8E-31 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0397 4ae35a30e1ded65e15feee436fd6a029 257 Pfam PF00072 Response regulator receiver domain 23 131 8.4E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0382 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 Gene3D G3DSA:3.30.70.1680 1 61 1.3E-31 T 14-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 YP_0382 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 SUPERFAMILY SSF117130 1 54 3.66E-21 T 14-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 YP_0382 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 59 17.134 T 14-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 YP_0382 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 3.0E-20 T 14-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 YP_0382 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 59 1.3E-31 T 14-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 YP_0382 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 Pfam PF02599 Global regulator protein family 1 52 2.5E-27 T 14-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 YP_2649 e8aaf3cfbb997d1931b5a7516be4e5b9 203 Gene3D G3DSA:2.60.460.10 33 200 1.7E-65 T 14-10-2018 IPR038714 YfeY-like superfamily YP_2649 e8aaf3cfbb997d1931b5a7516be4e5b9 203 ProDom PD105195 LIPOPROTEIN YFEY MEMBRANE OUTER PRECURSOR SIGNAL ESCHERICHIA ECS3303 EXPORTED Y1456 24 199 6.0E-101 T 14-10-2018 IPR010938 Protein of unknown function DUF1131 YP_2649 e8aaf3cfbb997d1931b5a7516be4e5b9 203 Pfam PF06572 Protein of unknown function (DUF1131) 30 199 2.2E-83 T 14-10-2018 IPR010938 Protein of unknown function DUF1131 YP_2001 a6dd32fe7bedb65fbd1cb7ab8eac66fa 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 265 37.479 T 14-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 YP_2001 a6dd32fe7bedb65fbd1cb7ab8eac66fa 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 14-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 YP_2001 a6dd32fe7bedb65fbd1cb7ab8eac66fa 268 Gene3D G3DSA:3.20.20.70 1 268 1.2E-98 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_2001 a6dd32fe7bedb65fbd1cb7ab8eac66fa 268 SUPERFAMILY SSF51366 1 266 9.42E-92 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 YP_2001 a6dd32fe7bedb65fbd1cb7ab8eac66fa 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 263 2.8E-102 T 14-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 YP_2001 a6dd32fe7bedb65fbd1cb7ab8eac66fa 268 Pfam PF00290 Tryptophan synthase alpha chain 8 266 9.0E-96 T 14-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 YP_0847 6d90c7ae595f19cff93b35e1309d4aa3 354 SUPERFAMILY SSF51246 278 353 2.2E-18 T 14-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 YP_0847 6d90c7ae595f19cff93b35e1309d4aa3 354 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 3 325 32.684 T 14-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 YP_0847 6d90c7ae595f19cff93b35e1309d4aa3 354 Gene3D G3DSA:3.30.470.20 152 354 2.6E-79 T 14-10-2018 YP_0847 6d90c7ae595f19cff93b35e1309d4aa3 354 SUPERFAMILY SSF52440 2 74 3.17E-15 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YP_0847 6d90c7ae595f19cff93b35e1309d4aa3 354 SUPERFAMILY SSF56059 79 274 1.02E-56 T 14-10-2018 YP_0847 6d90c7ae595f19cff93b35e1309d4aa3 354 Gene3D G3DSA:3.40.50.20 1 70 4.5E-31 T 14-10-2018 YP_0847 6d90c7ae595f19cff93b35e1309d4aa3 354 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 4 324 3.0E-108 T 14-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 YP_0847 6d90c7ae595f19cff93b35e1309d4aa3 354 Pfam PF02222 ATP-grasp domain 88 254 3.0E-53 T 14-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YP_0847 6d90c7ae595f19cff93b35e1309d4aa3 354 Gene3D G3DSA:3.30.1490.20 94 151 5.1E-21 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YP_1824 dcceb10adc939b4d7a3769b491e28e8e 474 SUPERFAMILY SSF51556 68 393 1.19E-68 T 14-10-2018 IPR032466 Metal-dependent hydrolase YP_1824 dcceb10adc939b4d7a3769b491e28e8e 474 Gene3D G3DSA:3.20.20.140 70 463 1.3E-182 T 14-10-2018 YP_1824 dcceb10adc939b4d7a3769b491e28e8e 474 Gene3D G3DSA:2.30.40.10 27 451 1.3E-182 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YP_1824 dcceb10adc939b4d7a3769b491e28e8e 474 Pfam PF01979 Amidohydrolase family 66 447 2.9E-30 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 YP_1824 dcceb10adc939b4d7a3769b491e28e8e 474 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 19 471 3.3E-228 T 14-10-2018 IPR010252 Formiminoglutamate deiminase YP_1824 dcceb10adc939b4d7a3769b491e28e8e 474 SUPERFAMILY SSF51338 374 452 2.0E-7 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YP_1236 d0df973df8b57af209c87a8ca0010866 356 Gene3D G3DSA:2.40.30.10 31 124 4.9E-19 T 14-10-2018 YP_1236 d0df973df8b57af209c87a8ca0010866 356 Pfam PF00970 Oxidoreductase FAD-binding domain 55 126 2.9E-8 T 14-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 YP_1236 d0df973df8b57af209c87a8ca0010866 356 SUPERFAMILY SSF52343 132 261 2.49E-30 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_1236 d0df973df8b57af209c87a8ca0010866 356 PRINTS PR00406 Cytochrome B5 reductase signature 77 84 3.5E-7 T 14-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 YP_1236 d0df973df8b57af209c87a8ca0010866 356 PRINTS PR00406 Cytochrome B5 reductase signature 137 156 3.5E-7 T 14-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 YP_1236 d0df973df8b57af209c87a8ca0010866 356 PRINTS PR00406 Cytochrome B5 reductase signature 228 236 3.5E-7 T 14-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 YP_1236 d0df973df8b57af209c87a8ca0010866 356 Pfam PF00175 Oxidoreductase NAD-binding domain 138 241 5.1E-16 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 YP_1236 d0df973df8b57af209c87a8ca0010866 356 Gene3D G3DSA:3.10.20.30 272 356 2.1E-20 T 14-10-2018 IPR012675 Beta-grasp domain superfamily YP_1236 d0df973df8b57af209c87a8ca0010866 356 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 307 315 - T 14-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 YP_1236 d0df973df8b57af209c87a8ca0010866 356 Gene3D G3DSA:3.40.50.80 127 268 4.0E-27 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_1236 d0df973df8b57af209c87a8ca0010866 356 SUPERFAMILY SSF63380 33 127 2.21E-21 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YP_1236 d0df973df8b57af209c87a8ca0010866 356 SUPERFAMILY SSF54292 250 354 5.51E-24 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YP_1236 d0df973df8b57af209c87a8ca0010866 356 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 282 348 9.0E-13 T 14-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 YP_3607 f90f4af1c80eae1c0903385399a43cd2 437 SUPERFAMILY SSF55920 175 433 1.03E-85 T 14-10-2018 IPR036005 Creatinase/aminopeptidase-like YP_3607 f90f4af1c80eae1c0903385399a43cd2 437 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 348 360 - T 14-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YP_3607 f90f4af1c80eae1c0903385399a43cd2 437 PRINTS PR00599 Methionine aminopeptidase-1 signature 253 269 1.6E-5 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YP_3607 f90f4af1c80eae1c0903385399a43cd2 437 PRINTS PR00599 Methionine aminopeptidase-1 signature 371 383 1.6E-5 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YP_3607 f90f4af1c80eae1c0903385399a43cd2 437 Gene3D G3DSA:3.40.350.10 1 171 8.0E-65 T 14-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YP_3607 f90f4af1c80eae1c0903385399a43cd2 437 Pfam PF05195 Aminopeptidase P, N-terminal domain 6 126 4.9E-35 T 14-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 YP_3607 f90f4af1c80eae1c0903385399a43cd2 437 SMART SM01011 1 136 8.1E-56 T 14-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 YP_3607 f90f4af1c80eae1c0903385399a43cd2 437 SUPERFAMILY SSF53092 1 174 6.8E-52 T 14-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YP_3607 f90f4af1c80eae1c0903385399a43cd2 437 Gene3D G3DSA:3.90.230.10 172 437 2.5E-104 T 14-10-2018 YP_3607 f90f4af1c80eae1c0903385399a43cd2 437 Pfam PF00557 Metallopeptidase family M24 182 412 5.5E-64 T 14-10-2018 IPR000994 Peptidase M24 YP_1215 7a2f7ec7f24af39822dcce1724c4f9f4 447 SUPERFAMILY SSF48019 252 434 1.25E-70 T 14-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 YP_1215 7a2f7ec7f24af39822dcce1724c4f9f4 447 Pfam PF16193 AAA C-terminal domain 188 267 4.0E-21 T 14-10-2018 IPR032423 AAA C-terminal domain YP_1215 7a2f7ec7f24af39822dcce1724c4f9f4 447 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 159 3.8E-15 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_1215 7a2f7ec7f24af39822dcce1724c4f9f4 447 Gene3D G3DSA:1.10.3710.10 346 447 1.3E-37 T 14-10-2018 YP_1215 7a2f7ec7f24af39822dcce1724c4f9f4 447 Gene3D G3DSA:1.10.8.60 165 240 3.6E-28 T 14-10-2018 YP_1215 7a2f7ec7f24af39822dcce1724c4f9f4 447 Gene3D G3DSA:3.40.50.300 1 164 2.5E-47 T 14-10-2018 YP_1215 7a2f7ec7f24af39822dcce1724c4f9f4 447 Pfam PF12002 MgsA AAA+ ATPase C terminal 268 434 4.4E-64 T 14-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal YP_1215 7a2f7ec7f24af39822dcce1724c4f9f4 447 Gene3D G3DSA:1.20.272.10 241 345 1.6E-43 T 14-10-2018 YP_1215 7a2f7ec7f24af39822dcce1724c4f9f4 447 SMART SM00382 49 165 4.6E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1215 7a2f7ec7f24af39822dcce1724c4f9f4 447 SUPERFAMILY SSF52540 6 236 5.36E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3821 1dff187c67b2d682cbd0f566448218ee 457 Gene3D G3DSA:2.40.10.120 39 263 2.0E-86 T 14-10-2018 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 PRINTS PR00834 HtrA/DegQ protease family signature 125 145 5.8E-58 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 PRINTS PR00834 HtrA/DegQ protease family signature 309 321 5.8E-58 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 PRINTS PR00834 HtrA/DegQ protease family signature 166 190 5.8E-58 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 PRINTS PR00834 HtrA/DegQ protease family signature 104 116 5.8E-58 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 PRINTS PR00834 HtrA/DegQ protease family signature 201 218 5.8E-58 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 PRINTS PR00834 HtrA/DegQ protease family signature 223 240 5.8E-58 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 375 445 1.4E-11 T 14-10-2018 IPR001478 PDZ domain GO:0005515 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 Gene3D G3DSA:2.30.42.10 264 366 6.1E-28 T 14-10-2018 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 SMART SM00228 269 351 1.3E-13 T 14-10-2018 IPR001478 PDZ domain GO:0005515 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 SMART SM00228 352 449 5.1E-11 T 14-10-2018 IPR001478 PDZ domain GO:0005515 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 SUPERFAMILY SSF50156 382 456 3.55E-15 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 41 455 7.1E-161 T 14-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 Pfam PF13180 PDZ domain 280 360 1.0E-15 T 14-10-2018 IPR001478 PDZ domain GO:0005515 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 SUPERFAMILY SSF50156 227 352 8.54E-24 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 Gene3D G3DSA:2.30.42.10 367 457 5.9E-25 T 14-10-2018 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 Pfam PF13365 Trypsin-like peptidase domain 94 230 3.3E-33 T 14-10-2018 YP_3821 1dff187c67b2d682cbd0f566448218ee 457 SUPERFAMILY SSF50494 39 261 1.6E-64 T 14-10-2018 IPR009003 Peptidase S1, PA clan YP_0247 d8332cf4f32a0b3d086a7b98ab3b2cef 88 SUPERFAMILY SSF46689 1 73 7.7E-17 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0247 d8332cf4f32a0b3d086a7b98ab3b2cef 88 Gene3D G3DSA:1.10.10.60 9 78 2.7E-6 T 14-10-2018 YP_0247 d8332cf4f32a0b3d086a7b98ab3b2cef 88 Pfam PF01527 Transposase 2 71 2.0E-23 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 YP_pCD89 d8332cf4f32a0b3d086a7b98ab3b2cef 88 SUPERFAMILY SSF46689 1 73 7.7E-17 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_pCD89 d8332cf4f32a0b3d086a7b98ab3b2cef 88 Gene3D G3DSA:1.10.10.60 9 78 2.7E-6 T 14-10-2018 YP_pCD89 d8332cf4f32a0b3d086a7b98ab3b2cef 88 Pfam PF01527 Transposase 2 71 2.0E-23 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 YP_2863 0a40ccf0093e7a7c44eb6adc26ad5d29 753 Gene3D G3DSA:2.40.40.20 599 753 2.8E-38 T 14-10-2018 YP_2863 0a40ccf0093e7a7c44eb6adc26ad5d29 753 Pfam PF01568 Molydopterin dinucleotide binding domain 625 745 1.3E-23 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 YP_2863 0a40ccf0093e7a7c44eb6adc26ad5d29 753 Gene3D G3DSA:3.90.55.10 10 565 2.1E-193 T 14-10-2018 YP_2863 0a40ccf0093e7a7c44eb6adc26ad5d29 753 SUPERFAMILY SSF53706 10 627 1.7E-153 T 14-10-2018 YP_2863 0a40ccf0093e7a7c44eb6adc26ad5d29 753 Pfam PF00384 Molybdopterin oxidoreductase 52 508 2.2E-58 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2863 0a40ccf0093e7a7c44eb6adc26ad5d29 753 SUPERFAMILY SSF50692 618 750 2.69E-32 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily YP_2863 0a40ccf0093e7a7c44eb6adc26ad5d29 753 Gene3D G3DSA:3.40.228.10 145 591 2.1E-193 T 14-10-2018 YP_2863 0a40ccf0093e7a7c44eb6adc26ad5d29 753 Gene3D G3DSA:3.40.50.740 52 517 2.1E-193 T 14-10-2018 YP_1910 c3561f73d268a220a8046db2b108f9a9 213 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 9 209 5.5E-86 T 14-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 YP_1910 c3561f73d268a220a8046db2b108f9a9 213 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 14-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 YP_1910 c3561f73d268a220a8046db2b108f9a9 213 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 40 49 - T 14-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 YP_1910 c3561f73d268a220a8046db2b108f9a9 213 Pfam PF01081 KDPG and KHG aldolase 9 203 1.3E-90 T 14-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 YP_1910 c3561f73d268a220a8046db2b108f9a9 213 SUPERFAMILY SSF51569 4 209 4.76E-70 T 14-10-2018 YP_1910 c3561f73d268a220a8046db2b108f9a9 213 Gene3D G3DSA:3.20.20.70 1 212 1.0E-74 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3559 58c3ffdd4f03bddc3c730ec581f6f9f3 285 Gene3D G3DSA:3.90.1720.10 53 235 7.2E-11 T 14-10-2018 YP_3559 58c3ffdd4f03bddc3c730ec581f6f9f3 285 SUPERFAMILY SSF54001 58 232 5.89E-28 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily YP_3559 58c3ffdd4f03bddc3c730ec581f6f9f3 285 Pfam PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family 59 151 5.9E-9 T 14-10-2018 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YP_0329 bd9830940cb3f095d7d551882c8c77ae 254 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 3 233 7.9E-75 T 14-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 YP_0329 bd9830940cb3f095d7d551882c8c77ae 254 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 2 250 39.415 T 14-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 YP_0329 bd9830940cb3f095d7d551882c8c77ae 254 Gene3D G3DSA:3.40.1210.10 1 254 1.1E-103 T 14-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 YP_0329 bd9830940cb3f095d7d551882c8c77ae 254 Pfam PF01975 Survival protein SurE 4 182 5.0E-57 T 14-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 YP_0329 bd9830940cb3f095d7d551882c8c77ae 254 SUPERFAMILY SSF64167 2 249 3.4E-81 T 14-10-2018 YP_3178 4c8853c8c64185b14d6bddccc600c3b6 419 SMART SM00959 5 47 8.6E-17 T 14-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 YP_3178 4c8853c8c64185b14d6bddccc600c3b6 419 Gene3D G3DSA:2.40.50.140 48 117 2.0E-35 T 14-10-2018 YP_3178 4c8853c8c64185b14d6bddccc600c3b6 419 SMART SM00357 52 118 2.0E-18 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 YP_3178 4c8853c8c64185b14d6bddccc600c3b6 419 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 249.558 T 14-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 YP_3178 4c8853c8c64185b14d6bddccc600c3b6 419 SUPERFAMILY SSF52540 90 371 2.66E-68 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3178 4c8853c8c64185b14d6bddccc600c3b6 419 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 1.9E-22 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_3178 4c8853c8c64185b14d6bddccc600c3b6 419 SMART SM00382 170 355 2.0E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3178 4c8853c8c64185b14d6bddccc600c3b6 419 Gene3D G3DSA:1.10.720.10 1 47 4.6E-24 T 14-10-2018 YP_3178 4c8853c8c64185b14d6bddccc600c3b6 419 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 2.8E-16 T 14-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 YP_3178 4c8853c8c64185b14d6bddccc600c3b6 419 SUPERFAMILY SSF68912 1 46 6.67E-12 T 14-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily YP_3178 4c8853c8c64185b14d6bddccc600c3b6 419 SUPERFAMILY SSF50249 48 125 5.57E-30 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_3178 4c8853c8c64185b14d6bddccc600c3b6 419 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 1.2E-220 T 14-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 YP_3178 4c8853c8c64185b14d6bddccc600c3b6 419 Gene3D G3DSA:3.40.50.300 130 417 9.7E-134 T 14-10-2018 YP_3178 4c8853c8c64185b14d6bddccc600c3b6 419 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 3.2E-32 T 14-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 YP_3875 69f10834e54af12134fcea64116681bf 289 Pfam PF00795 Carbon-nitrogen hydrolase 6 241 7.3E-48 T 14-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 YP_3875 69f10834e54af12134fcea64116681bf 289 SUPERFAMILY SSF56317 2 267 2.49E-72 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YP_3875 69f10834e54af12134fcea64116681bf 289 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 153 173 - T 14-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site YP_3875 69f10834e54af12134fcea64116681bf 289 Gene3D G3DSA:3.60.110.10 1 273 1.9E-85 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YP_0263 a12a9439efb9f0e5b6b8c8e326fbc443 466 PIRSF PIRSF006060 1 460 2.7E-74 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_0263 a12a9439efb9f0e5b6b8c8e326fbc443 466 Pfam PF00324 Amino acid permease 19 450 1.4E-118 T 14-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 YP_0263 a12a9439efb9f0e5b6b8c8e326fbc443 466 ProSitePatterns PS00218 Amino acid permeases signature. 44 74 - T 14-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 YP_0263 a12a9439efb9f0e5b6b8c8e326fbc443 466 Gene3D G3DSA:1.20.1740.10 11 465 7.5E-59 T 14-10-2018 YP_2090 220822f690122c33b3a758668574b1d6 317 SUPERFAMILY SSF159871 109 179 3.4E-17 T 14-10-2018 IPR036275 YdgH-like superfamily YP_2090 220822f690122c33b3a758668574b1d6 317 SUPERFAMILY SSF159871 3 94 3.92E-22 T 14-10-2018 IPR036275 YdgH-like superfamily YP_2090 220822f690122c33b3a758668574b1d6 317 Gene3D G3DSA:3.30.1660.10 107 176 2.5E-23 T 14-10-2018 IPR025543 Dodecin-like YP_2090 220822f690122c33b3a758668574b1d6 317 Gene3D G3DSA:3.30.1660.10 245 317 5.5E-30 T 14-10-2018 IPR025543 Dodecin-like YP_2090 220822f690122c33b3a758668574b1d6 317 PIRSF PIRSF014774 1 317 3.6E-185 T 14-10-2018 IPR025539 YdgH protein YP_2090 220822f690122c33b3a758668574b1d6 317 SUPERFAMILY SSF159871 241 317 2.62E-19 T 14-10-2018 IPR036275 YdgH-like superfamily YP_2090 220822f690122c33b3a758668574b1d6 317 Pfam PF07338 Protein of unknown function (DUF1471) 120 176 3.3E-19 T 14-10-2018 IPR010854 Domain of unknown function DUF1471 YP_2090 220822f690122c33b3a758668574b1d6 317 Pfam PF07338 Protein of unknown function (DUF1471) 36 91 4.1E-20 T 14-10-2018 IPR010854 Domain of unknown function DUF1471 YP_2090 220822f690122c33b3a758668574b1d6 317 Pfam PF07338 Protein of unknown function (DUF1471) 261 317 5.9E-21 T 14-10-2018 IPR010854 Domain of unknown function DUF1471 YP_2090 220822f690122c33b3a758668574b1d6 317 Gene3D G3DSA:3.30.1660.10 22 91 1.6E-25 T 14-10-2018 IPR025543 Dodecin-like YP_0351 8612e2f47a223bc535c30bb523e9f4fe 101 Pfam PF11903 ParD-like antitoxin of type II bacterial toxin-antitoxin system 19 79 2.7E-23 T 14-10-2018 IPR021831 ParD-like antitoxin of type II bacterial toxin-antitoxin system YP_pMT025 21f0881659e74d17ab5e95d752abf421 418 Gene3D G3DSA:3.40.50.300 4 174 2.5E-32 T 14-10-2018 YP_pMT025 21f0881659e74d17ab5e95d752abf421 418 Pfam PF03237 Terminase-like family 31 225 1.7E-7 T 14-10-2018 IPR004921 Terminase large subunit, T4likevirus-type YP_pMT025 21f0881659e74d17ab5e95d752abf421 418 Gene3D G3DSA:3.30.420.280 221 411 7.9E-15 T 14-10-2018 YP_pMT025 21f0881659e74d17ab5e95d752abf421 418 SUPERFAMILY SSF52540 10 151 1.62E-7 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2926 f6444766ea069a385acdb5668956cc58 459 Gene3D G3DSA:1.50.10.140 57 413 2.4E-24 T 14-10-2018 YP_2926 f6444766ea069a385acdb5668956cc58 459 Pfam PF10091 Putative glucoamylase 257 410 1.4E-7 T 14-10-2018 IPR019282 Domain of unknown function DUF2329 YP_1750 f8450f791942bcdc9b2344171f4459c0 278 PIRSF PIRSF006625 1 278 3.3E-136 T 14-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 YP_1750 f8450f791942bcdc9b2344171f4459c0 278 Gene3D G3DSA:2.60.120.10 10 264 6.3E-122 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_1750 f8450f791942bcdc9b2344171f4459c0 278 SUPERFAMILY SSF51182 1 262 1.2E-107 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily YP_1750 f8450f791942bcdc9b2344171f4459c0 278 Gene3D G3DSA:2.60.120.520 30 144 6.3E-122 T 14-10-2018 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 YP_1750 f8450f791942bcdc9b2344171f4459c0 278 Pfam PF04962 KduI/IolB family 69 272 1.7E-32 T 14-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 YP_1750 f8450f791942bcdc9b2344171f4459c0 278 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 1 278 56.325 T 14-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 YP_2473 398bf751a0d367c41c026bc9c3af519b 330 PIRSF PIRSF016502 7 330 2.9E-104 T 14-10-2018 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: R-HSA-425366 YP_2473 398bf751a0d367c41c026bc9c3af519b 330 TIGRFAM TIGR03441 urea_trans_yut: urea transporter 21 319 7.9E-117 T 14-10-2018 IPR017807 Urea transporter, bacteria GO:0015204|GO:0016021|GO:0071918 YP_2473 398bf751a0d367c41c026bc9c3af519b 330 Gene3D G3DSA:1.10.3430.10 8 330 3.7E-100 T 14-10-2018 IPR029020 Ammonium/urea transporter YP_2473 398bf751a0d367c41c026bc9c3af519b 330 Pfam PF03253 Urea transporter 24 320 4.5E-94 T 14-10-2018 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: R-HSA-425366 YP_1626 c04aecd7c3b44cee5431b40451fcaf2c 268 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 18 243 8.9E-61 T 14-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 YP_1626 c04aecd7c3b44cee5431b40451fcaf2c 268 TIGRFAM TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 6 253 6.5E-137 T 14-10-2018 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase GO:0010124|GO:0018802 KEGG: 00350+4.1.2.52 YP_1626 c04aecd7c3b44cee5431b40451fcaf2c 268 Gene3D G3DSA:3.20.20.60 3 258 7.9E-93 T 14-10-2018 YP_1626 c04aecd7c3b44cee5431b40451fcaf2c 268 SUPERFAMILY SSF51621 2 253 2.72E-82 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YP_3034 992466527ddc5f1b038b596f092d22c3 148 PIRSF PIRSF002889 1 148 2.3E-35 T 14-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 YP_3034 992466527ddc5f1b038b596f092d22c3 148 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 5 146 6.3E-31 T 14-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 YP_3034 992466527ddc5f1b038b596f092d22c3 148 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 14-10-2018 IPR019776 Flagellar basal body rod protein, conserved site YP_3034 992466527ddc5f1b038b596f092d22c3 148 Pfam PF00460 Flagella basal body rod protein 15 39 4.1E-5 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YP_0177 d61fdab0a299a2d549d9b811430b76f6 301 Gene3D G3DSA:3.40.50.300 13 301 3.0E-115 T 14-10-2018 YP_0177 d61fdab0a299a2d549d9b811430b76f6 301 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 19 226 1.7E-73 T 14-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 YP_0177 d61fdab0a299a2d549d9b811430b76f6 301 SUPERFAMILY SSF52540 16 298 1.88E-45 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0177 d61fdab0a299a2d549d9b811430b76f6 301 ProSitePatterns PS00567 Phosphoribulokinase signature. 176 189 - T 14-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 YP_0177 d61fdab0a299a2d549d9b811430b76f6 301 PRINTS PR00478 Phosphoribulokinase family signature 24 41 6.9E-29 T 14-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 YP_0177 d61fdab0a299a2d549d9b811430b76f6 301 PRINTS PR00478 Phosphoribulokinase family signature 194 217 6.9E-29 T 14-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 YP_0177 d61fdab0a299a2d549d9b811430b76f6 301 PRINTS PR00478 Phosphoribulokinase family signature 138 156 6.9E-29 T 14-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 YP_0177 d61fdab0a299a2d549d9b811430b76f6 301 PRINTS PR00478 Phosphoribulokinase family signature 176 193 6.9E-29 T 14-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 YP_2218 1f408ec68b6a84a9184df911d1597b81 118 SUPERFAMILY SSF74731 3 117 1.83E-50 T 14-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2218 1f408ec68b6a84a9184df911d1597b81 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 31.175 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2218 1f408ec68b6a84a9184df911d1597b81 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 3.2E-53 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2218 1f408ec68b6a84a9184df911d1597b81 118 Gene3D G3DSA:1.10.1900.20 56 118 2.8E-29 T 14-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2218 1f408ec68b6a84a9184df911d1597b81 118 Gene3D G3DSA:1.10.720.90 2 55 5.5E-25 T 14-10-2018 YP_2218 1f408ec68b6a84a9184df911d1597b81 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 1.2E-42 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2218 1f408ec68b6a84a9184df911d1597b81 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 1.2E-42 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2218 1f408ec68b6a84a9184df911d1597b81 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 1.2E-42 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2218 1f408ec68b6a84a9184df911d1597b81 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 4.0E-14 T 14-10-2018 YP_2218 1f408ec68b6a84a9184df911d1597b81 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2218 1f408ec68b6a84a9184df911d1597b81 118 Pfam PF00453 Ribosomal protein L20 3 109 5.1E-49 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_1093 b325b91acab384b0c36363bb89b89bb1 512 Pfam PF04055 Radical SAM superfamily 189 363 1.5E-27 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YP_1093 b325b91acab384b0c36363bb89b89bb1 512 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 189 209 - T 14-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 YP_1093 b325b91acab384b0c36363bb89b89bb1 512 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 42 476 9.6E-207 T 14-10-2018 YP_1093 b325b91acab384b0c36363bb89b89bb1 512 Pfam PF01938 TRAM domain 416 478 4.2E-18 T 14-10-2018 IPR002792 TRAM domain YP_1093 b325b91acab384b0c36363bb89b89bb1 512 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 41 478 73.796 T 14-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 YP_1093 b325b91acab384b0c36363bb89b89bb1 512 Pfam PF00919 Uncharacterized protein family UPF0004 42 142 1.5E-28 T 14-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 YP_1093 b325b91acab384b0c36363bb89b89bb1 512 Gene3D G3DSA:3.80.30.20 183 417 2.1E-84 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe YP_1093 b325b91acab384b0c36363bb89b89bb1 512 Gene3D G3DSA:3.40.50.12160 41 174 1.4E-32 T 14-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily YP_1093 b325b91acab384b0c36363bb89b89bb1 512 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 42 475 1.6E-156 T 14-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 YP_1093 b325b91acab384b0c36363bb89b89bb1 512 SUPERFAMILY SSF102114 165 410 1.28E-63 T 14-10-2018 YP_1093 b325b91acab384b0c36363bb89b89bb1 512 SMART SM00729 185 405 9.0E-64 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 YP_0894 0ec4680b6c8975087d66f41a79f95460 351 Pfam PF05954 Phage late control gene D protein (GPD) 26 324 9.6E-16 T 14-10-2018 YP_0894 0ec4680b6c8975087d66f41a79f95460 351 SUPERFAMILY SSF69279 1 175 1.42E-51 T 14-10-2018 YP_0894 0ec4680b6c8975087d66f41a79f95460 351 SUPERFAMILY SSF69279 176 349 4.59E-42 T 14-10-2018 YP_0894 0ec4680b6c8975087d66f41a79f95460 351 Gene3D G3DSA:2.30.300.10 7 340 1.7E-92 T 14-10-2018 YP_0894 0ec4680b6c8975087d66f41a79f95460 351 Gene3D G3DSA:3.55.50.10 91 175 1.7E-92 T 14-10-2018 YP_0894 0ec4680b6c8975087d66f41a79f95460 351 PIRSF PIRSF004440 1 351 1.5E-67 T 14-10-2018 IPR026276 Baseplate protein GpP YP_0894 0ec4680b6c8975087d66f41a79f95460 351 Gene3D G3DSA:3.30.1920.10 199 280 1.7E-92 T 14-10-2018 IPR023399 Baseplate-like, two-layer sandwich fold YP_0973 e003bd8462b4eca07cae26f673a4556a 470 Gene3D G3DSA:3.40.50.300 9 230 8.1E-77 T 14-10-2018 YP_0973 e003bd8462b4eca07cae26f673a4556a 470 SMART SM00490 278 359 2.3E-32 T 14-10-2018 IPR001650 Helicase, C-terminal YP_0973 e003bd8462b4eca07cae26f673a4556a 470 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 173 181 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YP_0973 e003bd8462b4eca07cae26f673a4556a 470 SMART SM00487 39 242 4.7E-58 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_0973 e003bd8462b4eca07cae26f673a4556a 470 SUPERFAMILY SSF52540 94 380 3.36E-73 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0973 e003bd8462b4eca07cae26f673a4556a 470 Gene3D G3DSA:3.40.50.300 234 413 2.8E-49 T 14-10-2018 YP_0973 e003bd8462b4eca07cae26f673a4556a 470 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 20 469 51.088 T 14-10-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 YP_0973 e003bd8462b4eca07cae26f673a4556a 470 Pfam PF00271 Helicase conserved C-terminal domain 254 358 3.9E-26 T 14-10-2018 IPR001650 Helicase, C-terminal YP_0973 e003bd8462b4eca07cae26f673a4556a 470 Pfam PF00270 DEAD/DEAH box helicase 44 214 5.2E-50 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 Pfam PF00623 RNA polymerase Rpb1, domain 2 392 485 3.9E-27 T 14-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 393 1.2E-7 T 14-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1367 0.0 T 14-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 SMART SM00663 235 514 1.1E-184 T 14-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 Pfam PF04997 RNA polymerase Rpb1, domain 1 15 342 3.6E-89 T 14-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 10 1377 19.019 T 14-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 Gene3D G3DSA:1.10.150.390 1316 1375 2.7E-28 T 14-10-2018 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 Gene3D G3DSA:1.10.40.90 374 416 2.0E-21 T 14-10-2018 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 1.4E-18 T 14-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 Gene3D G3DSA:1.10.1790.20 1135 1314 1.4E-59 T 14-10-2018 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 SUPERFAMILY SSF64484 16 1364 0.0 T 14-10-2018 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 Gene3D G3DSA:2.40.50.100 948 1022 1.6E-26 T 14-10-2018 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 Gene3D G3DSA:1.10.274.100 490 637 6.6E-33 T 14-10-2018 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 Gene3D G3DSA:2.40.50.100 1151 1215 1.4E-59 T 14-10-2018 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 Gene3D G3DSA:2.40.50.100 1023 1126 7.2E-29 T 14-10-2018 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 644 6.5E-27 T 14-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1315 4.0E-79 T 14-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3109 5f2dd5b26b67450b5f6388b90c0d917c 1406 Gene3D G3DSA:1.10.132.30 638 790 4.3E-66 T 14-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3268 7d0b164c6b62192ffe7c11ed768f290a 251 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 158 172 - T 14-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 YP_3268 7d0b164c6b62192ffe7c11ed768f290a 251 SUPERFAMILY SSF53335 19 248 2.01E-51 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3268 7d0b164c6b62192ffe7c11ed768f290a 251 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 25 250 5.3E-87 T 14-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 YP_3268 7d0b164c6b62192ffe7c11ed768f290a 251 Pfam PF01209 ubiE/COQ5 methyltransferase family 16 250 8.7E-107 T 14-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 YP_3268 7d0b164c6b62192ffe7c11ed768f290a 251 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 16 250 39.339 T 14-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 YP_3268 7d0b164c6b62192ffe7c11ed768f290a 251 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 36 51 - T 14-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 YP_3268 7d0b164c6b62192ffe7c11ed768f290a 251 Gene3D G3DSA:3.40.50.150 31 251 5.5E-76 T 14-10-2018 YP_3022 fd60ab7fa4a82b95b2db792517e4583d 137 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 56 130 6.6E-26 T 14-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 YP_3022 fd60ab7fa4a82b95b2db792517e4583d 137 Gene3D G3DSA:2.30.330.10 44 135 2.6E-24 T 14-10-2018 IPR036429 SpoA-like superfamily YP_3022 fd60ab7fa4a82b95b2db792517e4583d 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 58 74 2.0E-16 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YP_3022 fd60ab7fa4a82b95b2db792517e4583d 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 75 91 2.0E-16 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YP_3022 fd60ab7fa4a82b95b2db792517e4583d 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 104 119 2.0E-16 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YP_3022 fd60ab7fa4a82b95b2db792517e4583d 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 91 104 2.0E-16 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YP_3022 fd60ab7fa4a82b95b2db792517e4583d 137 SUPERFAMILY SSF101801 56 131 2.88E-19 T 14-10-2018 IPR036429 SpoA-like superfamily YP_3022 fd60ab7fa4a82b95b2db792517e4583d 137 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 59 127 1.9E-19 T 14-10-2018 IPR001543 Surface presentation of antigen (SpoA) YP_0220 d1e71548dbace9030783e0f6be326d92 101 Gene3D G3DSA:4.10.830.10 41 101 1.5E-23 T 14-10-2018 YP_0220 d1e71548dbace9030783e0f6be326d92 101 SUPERFAMILY SSF57716 2 101 1.14E-36 T 14-10-2018 YP_0220 d1e71548dbace9030783e0f6be326d92 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 1.8E-26 T 14-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0220 d1e71548dbace9030783e0f6be326d92 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.761 T 14-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid YP_0220 d1e71548dbace9030783e0f6be326d92 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 14-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0743 93639991ad92f98342204bc698054bc5 344 Pfam PF07549 SecD/SecF GG Motif 62 88 1.2E-10 T 14-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YP_0743 93639991ad92f98342204bc698054bc5 344 Gene3D G3DSA:1.20.1640.10 132 333 1.4E-15 T 14-10-2018 YP_0743 93639991ad92f98342204bc698054bc5 344 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 149 310 9.3E-56 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YP_0743 93639991ad92f98342204bc698054bc5 344 Pfam PF02355 Protein export membrane protein 139 322 2.3E-71 T 14-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YP_0743 93639991ad92f98342204bc698054bc5 344 PRINTS PR01755 Bacterial translocase SecF protein signature 181 195 2.2E-33 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YP_0743 93639991ad92f98342204bc698054bc5 344 PRINTS PR01755 Bacterial translocase SecF protein signature 229 247 2.2E-33 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YP_0743 93639991ad92f98342204bc698054bc5 344 PRINTS PR01755 Bacterial translocase SecF protein signature 66 81 2.2E-33 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YP_0743 93639991ad92f98342204bc698054bc5 344 PRINTS PR01755 Bacterial translocase SecF protein signature 261 276 2.2E-33 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YP_0743 93639991ad92f98342204bc698054bc5 344 SUPERFAMILY SSF82866 101 324 4.32E-42 T 14-10-2018 YP_0743 93639991ad92f98342204bc698054bc5 344 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 39 324 28.361 T 14-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 YP_0743 93639991ad92f98342204bc698054bc5 344 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 67 313 1.9E-88 T 14-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 YP_0425 453ef0f4bf9656932008e0236ddf2727 201 TIGRFAM TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family 1 196 6.9E-83 T 14-10-2018 IPR005773 Yop virulence translocation protein R GO:0015031|GO:0016021 YP_0425 453ef0f4bf9656932008e0236ddf2727 201 Pfam PF00813 FliP family 1 196 8.3E-65 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_0425 453ef0f4bf9656932008e0236ddf2727 201 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 129 149 2.4E-58 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_0425 453ef0f4bf9656932008e0236ddf2727 201 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 15 35 2.4E-58 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_0425 453ef0f4bf9656932008e0236ddf2727 201 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 174 199 2.4E-58 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_0425 453ef0f4bf9656932008e0236ddf2727 201 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 35 54 2.4E-58 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_0425 453ef0f4bf9656932008e0236ddf2727 201 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 150 171 2.4E-58 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_0425 453ef0f4bf9656932008e0236ddf2727 201 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 177 189 - T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_0425 453ef0f4bf9656932008e0236ddf2727 201 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 129 144 - T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_1950 1a077a9e2208c2bb84bd841cdad6cd2b 289 Gene3D G3DSA:2.60.120.10 149 253 5.1E-85 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_1950 1a077a9e2208c2bb84bd841cdad6cd2b 289 PIRSF PIRSF006232 2 288 1.4E-90 T 14-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 YP_1950 1a077a9e2208c2bb84bd841cdad6cd2b 289 Pfam PF02678 Pirin 20 127 2.8E-34 T 14-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 YP_1950 1a077a9e2208c2bb84bd841cdad6cd2b 289 Pfam PF05726 Pirin C-terminal cupin domain 182 284 3.8E-27 T 14-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 YP_1950 1a077a9e2208c2bb84bd841cdad6cd2b 289 Gene3D G3DSA:2.60.120.10 17 279 5.1E-85 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_1950 1a077a9e2208c2bb84bd841cdad6cd2b 289 SUPERFAMILY SSF51182 4 286 4.16E-85 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily YP_0358 02fa36422d7110a740993083a45a7145 367 Gene3D G3DSA:3.40.50.2300 168 305 7.8E-84 T 14-10-2018 YP_0358 02fa36422d7110a740993083a45a7145 367 Pfam PF13407 Periplasmic binding protein domain 70 325 9.9E-52 T 14-10-2018 IPR025997 Periplasmic binding protein YP_0358 02fa36422d7110a740993083a45a7145 367 SUPERFAMILY SSF53822 65 336 7.54E-63 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_0358 02fa36422d7110a740993083a45a7145 367 Gene3D G3DSA:3.40.50.2300 71 337 7.8E-84 T 14-10-2018 YP_0384 5a22e148cb1017a56fd3e53400828800 142 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 10 109 2.0E-4 T 14-10-2018 IPR020143 Uncharacterised protein family, RP436 YP_3557 74fbd5a5b1ebb5ac7dc32b2f0ed65143 340 Gene3D G3DSA:3.40.50.2300 138 274 6.0E-65 T 14-10-2018 YP_3557 74fbd5a5b1ebb5ac7dc32b2f0ed65143 340 Pfam PF13407 Periplasmic binding protein domain 36 294 7.4E-44 T 14-10-2018 IPR025997 Periplasmic binding protein YP_3557 74fbd5a5b1ebb5ac7dc32b2f0ed65143 340 Gene3D G3DSA:3.40.50.2300 35 301 6.0E-65 T 14-10-2018 YP_3557 74fbd5a5b1ebb5ac7dc32b2f0ed65143 340 SUPERFAMILY SSF53822 34 337 1.99E-65 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_1772 d1b7172ffa87ca38a7c226a9dd8f2c43 347 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 14-10-2018 YP_1772 d1b7172ffa87ca38a7c226a9dd8f2c43 347 Gene3D G3DSA:3.40.50.2300 161 295 2.7E-41 T 14-10-2018 YP_1772 d1b7172ffa87ca38a7c226a9dd8f2c43 347 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 63 326 3.3E-48 T 14-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain YP_1772 d1b7172ffa87ca38a7c226a9dd8f2c43 347 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 6.2E-15 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_1772 d1b7172ffa87ca38a7c226a9dd8f2c43 347 SUPERFAMILY SSF53822 69 333 1.29E-38 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_1772 d1b7172ffa87ca38a7c226a9dd8f2c43 347 Gene3D G3DSA:1.10.260.40 1 58 3.5E-17 T 14-10-2018 YP_1772 d1b7172ffa87ca38a7c226a9dd8f2c43 347 SMART SM00354 1 73 7.1E-19 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_1772 d1b7172ffa87ca38a7c226a9dd8f2c43 347 SUPERFAMILY SSF47413 1 59 1.13E-14 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_1772 d1b7172ffa87ca38a7c226a9dd8f2c43 347 Gene3D G3DSA:3.40.50.2300 72 310 2.7E-41 T 14-10-2018 YP_2212 0d9ea4145af0666724ea62dbbcdadfef 358 Pfam PF01032 FecCD transport family 52 353 1.4E-83 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YP_2212 0d9ea4145af0666724ea62dbbcdadfef 358 SUPERFAMILY SSF81345 35 353 6.54E-78 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_2212 0d9ea4145af0666724ea62dbbcdadfef 358 Hamap MF_01004 Vitamin B12 import system permease protein BtuC [btuC]. 30 356 32.814 T 14-10-2018 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC GO:0015889|GO:0016020 YP_2212 0d9ea4145af0666724ea62dbbcdadfef 358 Gene3D G3DSA:1.10.3470.10 30 355 1.7E-105 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_2487 89c5e3dcce66919d8c105e0b71e75ba8 180 SUPERFAMILY SSF82808 65 180 3.14E-48 T 14-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 YP_2487 89c5e3dcce66919d8c105e0b71e75ba8 180 Gene3D G3DSA:1.20.1380.10 67 180 7.1E-45 T 14-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 YP_2487 89c5e3dcce66919d8c105e0b71e75ba8 180 Gene3D G3DSA:1.10.1220.10 6 45 3.2E-24 T 14-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 YP_2487 89c5e3dcce66919d8c105e0b71e75ba8 180 Pfam PF17206 SeqA protein N-terminal domain 6 41 6.4E-24 T 14-10-2018 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal YP_2487 89c5e3dcce66919d8c105e0b71e75ba8 180 SUPERFAMILY SSF47598 6 40 5.19E-14 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 YP_2487 89c5e3dcce66919d8c105e0b71e75ba8 180 Pfam PF03925 SeqA protein C-terminal domain 70 178 7.2E-48 T 14-10-2018 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 YP_2487 89c5e3dcce66919d8c105e0b71e75ba8 180 PIRSF PIRSF019401 55 180 2.2E-31 T 14-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 YP_2487 89c5e3dcce66919d8c105e0b71e75ba8 180 PIRSF PIRSF019401 6 74 3.9E-17 T 14-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 YP_2487 89c5e3dcce66919d8c105e0b71e75ba8 180 Hamap MF_00908 Negative modulator of initiation of replication [seqA]. 6 180 41.949 T 14-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 YP_3846 cf9cd4000d653d9fd700d9d75f0ce0b7 317 SUPERFAMILY SSF47413 3 60 6.38E-17 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_3846 cf9cd4000d653d9fd700d9d75f0ce0b7 317 TIGRFAM TIGR02405 trehalos_R_Ecol: trehalose operon repressor 4 315 2.1E-152 T 14-10-2018 IPR012771 Trehalose operon repressor GO:0003677|GO:0005991|GO:0045892 YP_3846 cf9cd4000d653d9fd700d9d75f0ce0b7 317 Gene3D G3DSA:3.40.50.2300 163 281 6.0E-68 T 14-10-2018 YP_3846 cf9cd4000d653d9fd700d9d75f0ce0b7 317 Pfam PF13377 Periplasmic binding protein-like domain 168 317 1.4E-15 T 14-10-2018 YP_3846 cf9cd4000d653d9fd700d9d75f0ce0b7 317 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 3.2E-20 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_3846 cf9cd4000d653d9fd700d9d75f0ce0b7 317 Gene3D G3DSA:1.10.260.40 1 61 1.6E-21 T 14-10-2018 YP_3846 cf9cd4000d653d9fd700d9d75f0ce0b7 317 SMART SM00354 4 74 2.8E-33 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_3846 cf9cd4000d653d9fd700d9d75f0ce0b7 317 SUPERFAMILY SSF53822 63 316 3.34E-62 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_3846 cf9cd4000d653d9fd700d9d75f0ce0b7 317 Gene3D G3DSA:3.40.50.2300 68 304 6.0E-68 T 14-10-2018 YP_3846 cf9cd4000d653d9fd700d9d75f0ce0b7 317 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 14-10-2018 YP_3846 cf9cd4000d653d9fd700d9d75f0ce0b7 317 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 16 26 6.3E-6 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_3846 cf9cd4000d653d9fd700d9d75f0ce0b7 317 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 6 16 6.3E-6 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_0739 03c5222b38dfb7c7d8bd859756d7b060 356 SUPERFAMILY SSF111337 1 343 2.49E-137 T 14-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 YP_0739 03c5222b38dfb7c7d8bd859756d7b060 356 Gene3D G3DSA:3.40.1780.10 14 343 8.5E-117 T 14-10-2018 YP_0739 03c5222b38dfb7c7d8bd859756d7b060 356 Pfam PF02547 Queuosine biosynthesis protein 4 343 1.6E-131 T 14-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 YP_0739 03c5222b38dfb7c7d8bd859756d7b060 356 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 344 46.902 T 14-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 YP_0739 03c5222b38dfb7c7d8bd859756d7b060 356 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 343 3.9E-159 T 14-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 YP_0739 03c5222b38dfb7c7d8bd859756d7b060 356 Gene3D G3DSA:2.40.10.240 64 163 8.5E-117 T 14-10-2018 YP_1861 75d58f8807110da81f25b5fb9a16505d 321 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 10 127 2.0E-49 T 14-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 YP_1861 75d58f8807110da81f25b5fb9a16505d 321 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 10 320 49.844 T 14-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 YP_1861 75d58f8807110da81f25b5fb9a16505d 321 Pfam PF14572 Phosphoribosyl synthetase-associated domain 210 319 2.2E-30 T 14-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 YP_1861 75d58f8807110da81f25b5fb9a16505d 321 Gene3D G3DSA:3.40.50.2020 13 308 1.0E-136 T 14-10-2018 YP_1861 75d58f8807110da81f25b5fb9a16505d 321 SUPERFAMILY SSF53271 75 312 2.62E-67 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like YP_1861 75d58f8807110da81f25b5fb9a16505d 321 SMART SM01400 10 127 5.7E-76 T 14-10-2018 YP_1861 75d58f8807110da81f25b5fb9a16505d 321 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 10 320 6.7E-127 T 14-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 YP_1861 75d58f8807110da81f25b5fb9a16505d 321 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 135 150 - T 14-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 YP_1861 75d58f8807110da81f25b5fb9a16505d 321 Gene3D G3DSA:3.40.50.2020 154 296 1.0E-136 T 14-10-2018 YP_2465 c2c84b1c38b72e82ec25d441828b120d 234 SMART SM00382 39 212 1.7E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2465 c2c84b1c38b72e82ec25d441828b120d 234 Gene3D G3DSA:3.40.50.300 12 218 3.2E-40 T 14-10-2018 YP_2465 c2c84b1c38b72e82ec25d441828b120d 234 Pfam PF00005 ABC transporter 32 163 4.0E-16 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2465 c2c84b1c38b72e82ec25d441828b120d 234 SUPERFAMILY SSF52540 9 207 9.89E-38 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2465 c2c84b1c38b72e82ec25d441828b120d 234 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2466 a3146419f9bca7692336c5cdbe6c0346 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 1.0E-46 T 14-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2466 a3146419f9bca7692336c5cdbe6c0346 100 SUPERFAMILY SSF54111 1 99 7.19E-41 T 14-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2466 a3146419f9bca7692336c5cdbe6c0346 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 100 2.9E-43 T 14-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2466 a3146419f9bca7692336c5cdbe6c0346 100 Gene3D G3DSA:3.30.280.10 1 100 3.8E-43 T 14-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2466 a3146419f9bca7692336c5cdbe6c0346 100 Pfam PF00547 Urease, gamma subunit 1 99 2.6E-42 T 14-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2466 a3146419f9bca7692336c5cdbe6c0346 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 32.942 T 14-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2466 a3146419f9bca7692336c5cdbe6c0346 100 PIRSF PIRSF001223 1 100 3.8E-48 T 14-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_3474 c710a00c3443e301a4c85353e704e0cb 211 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 40 180 7.4E-53 T 14-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal YP_2638 b94666000c8716b4c892250dc298b0a2 277 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 9 271 1.1E-114 T 14-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 YP_2638 b94666000c8716b4c892250dc298b0a2 277 Gene3D G3DSA:1.10.3720.10 14 272 1.5E-69 T 14-10-2018 IPR035906 MetI-like superfamily YP_2638 b94666000c8716b4c892250dc298b0a2 277 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 6 269 2.2E-111 T 14-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 YP_2638 b94666000c8716b4c892250dc298b0a2 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 274 3.4E-30 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2638 b94666000c8716b4c892250dc298b0a2 277 SUPERFAMILY SSF161098 17 264 7.59E-57 T 14-10-2018 IPR035906 MetI-like superfamily YP_1111 383c247f34415e2eb90830ed90e0a802 360 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 78 177 6.4E-35 T 14-10-2018 IPR012997 Rare lipoprotein A YP_1111 383c247f34415e2eb90830ed90e0a802 360 Gene3D G3DSA:3.30.70.1070 287 359 3.0E-12 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 YP_1111 383c247f34415e2eb90830ed90e0a802 360 SUPERFAMILY SSF110997 286 357 4.58E-15 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 YP_1111 383c247f34415e2eb90830ed90e0a802 360 Pfam PF05036 Sporulation related domain 286 357 1.4E-15 T 14-10-2018 IPR007730 Sporulation-like domain GO:0042834 YP_1111 383c247f34415e2eb90830ed90e0a802 360 Pfam PF03330 Lytic transglycolase 78 164 1.3E-23 T 14-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain YP_1111 383c247f34415e2eb90830ed90e0a802 360 SUPERFAMILY SSF50685 75 164 4.19E-9 T 14-10-2018 IPR036908 RlpA-like domain superfamily YP_1111 383c247f34415e2eb90830ed90e0a802 360 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 3 166 22.941 T 14-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 YP_1111 383c247f34415e2eb90830ed90e0a802 360 Gene3D G3DSA:2.40.40.10 76 167 2.9E-32 T 14-10-2018 IPR036908 RlpA-like domain superfamily YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 TIGRFAM TIGR02082 metH: methionine synthase 18 1196 0.0 T 14-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 Gene3D G3DSA:3.40.50.280 748 899 1.3E-56 T 14-10-2018 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 SUPERFAMILY SSF51717 361 635 1.01E-87 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 Gene3D G3DSA:3.20.20.330 6 343 1.0E-122 T 14-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 Pfam PF02607 B12 binding domain 664 737 1.6E-23 T 14-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 SUPERFAMILY SSF52242 748 898 5.1E-46 T 14-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 942 1212 1.2E-123 T 14-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 Pfam PF02574 Homocysteine S-methyltransferase 22 330 5.9E-79 T 14-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 Gene3D G3DSA:1.10.1240.10 653 741 9.8E-40 T 14-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 PIRSF PIRSF000381 6 1199 0.0 T 14-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 Gene3D G3DSA:3.20.20.20 345 647 1.1E-127 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 SMART SM01018 661 744 5.7E-43 T 14-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 Pfam PF00809 Pterin binding enzyme 365 603 2.1E-61 T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 SUPERFAMILY SSF56507 907 1230 2.22E-133 T 14-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 SUPERFAMILY SSF47644 657 743 5.36E-28 T 14-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 SUPERFAMILY SSF82282 12 404 9.68E-115 T 14-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 Pfam PF02310 B12 binding domain 752 844 1.4E-18 T 14-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 Gene3D G3DSA:1.10.288.10 940 1096 1.9E-149 T 14-10-2018 YP_3084 8c0f8dbe7afff4e74514a9c6b01dad7c 1231 Gene3D G3DSA:3.10.196.10 912 1227 1.9E-149 T 14-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_0290 2b88d62c6c511a158f8a829639ca162e 191 Pfam PF02834 LigT like Phosphoesterase 19 96 1.3E-11 T 14-10-2018 IPR014051 Phosphoesterase, HXTX YP_0290 2b88d62c6c511a158f8a829639ca162e 191 Pfam PF02834 LigT like Phosphoesterase 100 173 1.5E-6 T 14-10-2018 IPR014051 Phosphoesterase, HXTX YP_0290 2b88d62c6c511a158f8a829639ca162e 191 Gene3D G3DSA:3.90.1140.10 8 182 5.8E-49 T 14-10-2018 YP_0290 2b88d62c6c511a158f8a829639ca162e 191 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 12 181 21.466 T 14-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 YP_0290 2b88d62c6c511a158f8a829639ca162e 191 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 13 181 1.7E-36 T 14-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 YP_0290 2b88d62c6c511a158f8a829639ca162e 191 SUPERFAMILY SSF55144 13 183 6.28E-44 T 14-10-2018 IPR009097 Cyclic phosphodiesterase YP_0093 dd514e72131de9f396a3f36e31507809 372 Gene3D G3DSA:3.30.540.10 43 356 1.6E-128 T 14-10-2018 YP_0093 dd514e72131de9f396a3f36e31507809 372 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 37 366 8.4E-177 T 14-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 YP_0093 dd514e72131de9f396a3f36e31507809 372 PIRSF PIRSF004532 37 368 5.7E-139 T 14-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 YP_0093 dd514e72131de9f396a3f36e31507809 372 SUPERFAMILY SSF56655 37 361 2.69E-108 T 14-10-2018 YP_0093 dd514e72131de9f396a3f36e31507809 372 Gene3D G3DSA:3.40.190.90 146 313 1.6E-128 T 14-10-2018 YP_0093 dd514e72131de9f396a3f36e31507809 372 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 39 358 3.6E-131 T 14-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 YP_0888 f39276d7c8a05bced86eedf50ad92e7d 259 Gene3D G3DSA:3.90.1340.10 102 155 1.4E-25 T 14-10-2018 IPR037053 Phage tail collar domain superfamily YP_0888 f39276d7c8a05bced86eedf50ad92e7d 259 Pfam PF07484 Phage Tail Collar Domain 107 154 2.6E-12 T 14-10-2018 IPR011083 Phage tail collar domain YP_0888 f39276d7c8a05bced86eedf50ad92e7d 259 SUPERFAMILY SSF88874 96 258 2.49E-44 T 14-10-2018 YP_1183 b33a783a6fe73e93b9a0b28f13efea53 401 SUPERFAMILY SSF53383 6 401 3.14E-116 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_1183 b33a783a6fe73e93b9a0b28f13efea53 401 Gene3D G3DSA:3.90.1150.10 16 396 7.6E-162 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_1183 b33a783a6fe73e93b9a0b28f13efea53 401 PRINTS PR00799 Aspartate aminotransferase signature 211 223 1.4E-39 T 14-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 YP_1183 b33a783a6fe73e93b9a0b28f13efea53 401 PRINTS PR00799 Aspartate aminotransferase signature 346 364 1.4E-39 T 14-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 YP_1183 b33a783a6fe73e93b9a0b28f13efea53 401 PRINTS PR00799 Aspartate aminotransferase signature 180 199 1.4E-39 T 14-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 YP_1183 b33a783a6fe73e93b9a0b28f13efea53 401 PRINTS PR00799 Aspartate aminotransferase signature 278 303 1.4E-39 T 14-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 YP_1183 b33a783a6fe73e93b9a0b28f13efea53 401 Gene3D G3DSA:3.40.640.10 50 320 7.6E-162 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_1183 b33a783a6fe73e93b9a0b28f13efea53 401 Pfam PF00155 Aminotransferase class I and II 32 397 1.5E-91 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YP_1183 b33a783a6fe73e93b9a0b28f13efea53 401 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 248 261 - T 14-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 YP_3824 c657bb0a3af6952bcdc5da8b910bd65b 420 SUPERFAMILY SSF55205 1 419 2.62E-147 T 14-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 YP_3824 c657bb0a3af6952bcdc5da8b910bd65b 420 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 416 2.4E-186 T 14-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3824 c657bb0a3af6952bcdc5da8b910bd65b 420 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 417 44.564 T 14-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3824 c657bb0a3af6952bcdc5da8b910bd65b 420 Gene3D G3DSA:3.65.10.10 21 229 2.4E-174 T 14-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 YP_3824 c657bb0a3af6952bcdc5da8b910bd65b 420 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 6 407 6.4E-127 T 14-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 YP_3824 c657bb0a3af6952bcdc5da8b910bd65b 420 Gene3D G3DSA:3.65.10.10 7 414 2.4E-174 T 14-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 YP_1767 d77ce8c2a30afceac3c53d8bab2f3371 208 SUPERFAMILY SSF101322 2 207 2.88E-82 T 14-10-2018 IPR035932 HflD-like superfamily YP_1767 d77ce8c2a30afceac3c53d8bab2f3371 208 Gene3D G3DSA:1.10.3890.10 1 208 4.9E-80 T 14-10-2018 IPR035932 HflD-like superfamily YP_1767 d77ce8c2a30afceac3c53d8bab2f3371 208 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 197 4.0E-105 T 14-10-2018 YP_1767 d77ce8c2a30afceac3c53d8bab2f3371 208 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 206 36.962 T 14-10-2018 IPR007451 High frequency lysogenization protein HflD YP_1767 d77ce8c2a30afceac3c53d8bab2f3371 208 Pfam PF04356 Protein of unknown function (DUF489) 7 198 2.1E-77 T 14-10-2018 IPR007451 High frequency lysogenization protein HflD YP_3424 2bdeaedc9e7b4640f4c1f1b558d36bb5 550 ProSitePatterns PS00455 Putative AMP-binding domain signature. 95 106 - T 14-10-2018 IPR020845 AMP-binding, conserved site YP_3424 2bdeaedc9e7b4640f4c1f1b558d36bb5 550 Pfam PF00501 AMP-binding enzyme 2 358 4.5E-79 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YP_3424 2bdeaedc9e7b4640f4c1f1b558d36bb5 550 Gene3D G3DSA:3.40.50.1820 458 547 1.7E-17 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_3424 2bdeaedc9e7b4640f4c1f1b558d36bb5 550 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2 381 3.2E-104 T 14-10-2018 IPR010071 Amino acid adenylation domain YP_3424 2bdeaedc9e7b4640f4c1f1b558d36bb5 550 SUPERFAMILY SSF56801 3 481 6.8E-111 T 14-10-2018 YP_3424 2bdeaedc9e7b4640f4c1f1b558d36bb5 550 Gene3D G3DSA:3.40.50.12780 1 350 3.6E-98 T 14-10-2018 YP_3424 2bdeaedc9e7b4640f4c1f1b558d36bb5 550 Pfam PF00550 Phosphopantetheine attachment site 469 530 2.2E-9 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain YP_3424 2bdeaedc9e7b4640f4c1f1b558d36bb5 550 Gene3D G3DSA:3.30.300.30 352 450 1.2E-21 T 14-10-2018 YP_3424 2bdeaedc9e7b4640f4c1f1b558d36bb5 550 SUPERFAMILY SSF47336 462 530 5.63E-15 T 14-10-2018 IPR036736 ACP-like superfamily YP_3706 90b74a7072744f89f5dc3984a0d65eb3 312 SUPERFAMILY SSF82114 174 307 1.68E-43 T 14-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 YP_3706 90b74a7072744f89f5dc3984a0d65eb3 312 SMART SM00904 183 307 3.0E-62 T 14-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 YP_3706 90b74a7072744f89f5dc3984a0d65eb3 312 Pfam PF01687 Riboflavin kinase 184 306 1.6E-37 T 14-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 YP_3706 90b74a7072744f89f5dc3984a0d65eb3 312 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 306 7.8E-113 T 14-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 YP_3706 90b74a7072744f89f5dc3984a0d65eb3 312 Gene3D G3DSA:2.40.30.30 188 310 6.0E-38 T 14-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 YP_3706 90b74a7072744f89f5dc3984a0d65eb3 312 SUPERFAMILY SSF52374 15 175 1.69E-36 T 14-10-2018 YP_3706 90b74a7072744f89f5dc3984a0d65eb3 312 PIRSF PIRSF004491 1 310 4.2E-103 T 14-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 YP_3706 90b74a7072744f89f5dc3984a0d65eb3 312 Pfam PF06574 FAD synthetase 12 167 4.3E-57 T 14-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 YP_3706 90b74a7072744f89f5dc3984a0d65eb3 312 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 18 51 2.0E-7 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 YP_3706 90b74a7072744f89f5dc3984a0d65eb3 312 Gene3D G3DSA:3.40.50.620 1 186 1.9E-60 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0811 0b4a923e235046d2194499828fe75992 624 Gene3D G3DSA:3.30.565.10 2 218 2.6E-79 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0811 0b4a923e235046d2194499828fe75992 624 SUPERFAMILY SSF55874 6 216 2.88E-66 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0811 0b4a923e235046d2194499828fe75992 624 Gene3D G3DSA:3.40.50.11260 402 492 2.0E-36 T 14-10-2018 YP_0811 0b4a923e235046d2194499828fe75992 624 Gene3D G3DSA:3.30.230.80 229 401 8.0E-71 T 14-10-2018 YP_0811 0b4a923e235046d2194499828fe75992 624 PIRSF PIRSF002583 2 624 1.4E-218 T 14-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 YP_0811 0b4a923e235046d2194499828fe75992 624 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 184 2.1E-13 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0811 0b4a923e235046d2194499828fe75992 624 Pfam PF00183 Hsp90 protein 215 623 1.4E-126 T 14-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 YP_0811 0b4a923e235046d2194499828fe75992 624 SUPERFAMILY SSF54211 230 485 1.97E-100 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0811 0b4a923e235046d2194499828fe75992 624 SMART SM00387 29 186 4.1E-10 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0811 0b4a923e235046d2194499828fe75992 624 Hamap MF_00505 Chaperone protein HtpG [htpG]. 4 623 32.917 T 14-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 YP_0811 0b4a923e235046d2194499828fe75992 624 Gene3D G3DSA:1.20.120.790 493 624 8.2E-47 T 14-10-2018 IPR037196 HSP90, C-terminal domain YP_0811 0b4a923e235046d2194499828fe75992 624 SUPERFAMILY SSF110942 510 623 9.68E-36 T 14-10-2018 IPR037196 HSP90, C-terminal domain YP_0811 0b4a923e235046d2194499828fe75992 624 PRINTS PR00775 90kDa heat shock protein signature 7 27 3.2E-65 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal YP_0811 0b4a923e235046d2194499828fe75992 624 PRINTS PR00775 90kDa heat shock protein signature 28 50 3.2E-65 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal YP_0811 0b4a923e235046d2194499828fe75992 624 PRINTS PR00775 90kDa heat shock protein signature 77 94 3.2E-65 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal YP_0811 0b4a923e235046d2194499828fe75992 624 PRINTS PR00775 90kDa heat shock protein signature 95 112 3.2E-65 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal YP_0811 0b4a923e235046d2194499828fe75992 624 PRINTS PR00775 90kDa heat shock protein signature 192 210 3.2E-65 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal YP_0811 0b4a923e235046d2194499828fe75992 624 PRINTS PR00775 90kDa heat shock protein signature 174 191 3.2E-65 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal YP_0811 0b4a923e235046d2194499828fe75992 624 PRINTS PR00775 90kDa heat shock protein signature 122 144 3.2E-65 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal YP_0811 0b4a923e235046d2194499828fe75992 624 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 27 36 - T 14-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 YP_2594 b4db0443115485606f2fb1e1ddfba28f 189 Pfam PF00037 4Fe-4S binding domain 165 185 7.2E-5 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2594 b4db0443115485606f2fb1e1ddfba28f 189 Gene3D G3DSA:3.30.70.20 60 127 5.2E-10 T 14-10-2018 YP_2594 b4db0443115485606f2fb1e1ddfba28f 189 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 68 79 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2594 b4db0443115485606f2fb1e1ddfba28f 189 Pfam PF12838 4Fe-4S dicluster domain 67 118 1.8E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2594 b4db0443115485606f2fb1e1ddfba28f 189 Gene3D G3DSA:3.30.70.20 128 189 1.1E-7 T 14-10-2018 YP_2594 b4db0443115485606f2fb1e1ddfba28f 189 SUPERFAMILY SSF54862 59 187 1.79E-18 T 14-10-2018 YP_2594 b4db0443115485606f2fb1e1ddfba28f 189 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 170 181 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 SMART SM01086 773 862 2.3E-36 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 Gene3D G3DSA:1.10.8.60 773 864 3.5E-26 T 14-10-2018 YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 Pfam PF07724 AAA domain (Cdc48 subfamily) 603 767 1.0E-56 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 773 849 8.9E-26 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 SUPERFAMILY SSF81923 11 163 1.86E-41 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 24 76 4.6E-15 T 14-10-2018 IPR004176 Clp, N-terminal YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 101 152 3.4E-9 T 14-10-2018 IPR004176 Clp, N-terminal YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 SUPERFAMILY SSF52540 553 858 2.98E-86 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 Gene3D G3DSA:3.40.50.300 557 771 3.6E-92 T 14-10-2018 YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 638 656 - T 14-10-2018 IPR028299 ClpA/B, conserved site 2 YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 SUPERFAMILY SSF52540 166 552 4.78E-100 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 301 313 - T 14-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 SMART SM00382 205 351 1.2E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 SMART SM00382 604 740 5.8E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 210 342 1.9E-13 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 Gene3D G3DSA:1.10.1780.10 8 154 1.5E-34 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 715 729 1.7E-42 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 682 700 1.7E-42 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 608 626 1.7E-42 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 653 671 1.7E-42 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 Gene3D G3DSA:3.40.50.300 350 551 8.7E-70 T 14-10-2018 YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 Gene3D G3DSA:3.40.50.300 155 349 2.9E-74 T 14-10-2018 YP_0656 bce519d8a23f8f24232e10e5e8794e81 864 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 13 861 0.0 T 14-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 YP_1654 997101de1f565c478b0e346383b995b0 2041 SMART SM00823 Phosphopantetheine attachment site 1955 2023 0.0012 T 14-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 YP_1654 997101de1f565c478b0e346383b995b0 2041 SMART SM00823 Phosphopantetheine attachment site 1416 1484 0.12 T 14-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 YP_1654 997101de1f565c478b0e346383b995b0 2041 Pfam PF00550 Phosphopantetheine attachment site 28 88 1.0E-6 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain YP_1654 997101de1f565c478b0e346383b995b0 2041 Pfam PF00550 Phosphopantetheine attachment site 1958 2019 4.2E-8 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain YP_1654 997101de1f565c478b0e346383b995b0 2041 Pfam PF00550 Phosphopantetheine attachment site 1418 1479 3.0E-9 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain YP_1654 997101de1f565c478b0e346383b995b0 2041 Gene3D G3DSA:3.30.559.10 1496 1668 1.3E-47 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 YP_1654 997101de1f565c478b0e346383b995b0 2041 Gene3D G3DSA:3.30.559.10 115 297 1.5E-45 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 YP_1654 997101de1f565c478b0e346383b995b0 2041 Gene3D G3DSA:3.40.50.150 1159 1315 2.3E-15 T 14-10-2018 YP_1654 997101de1f565c478b0e346383b995b0 2041 Gene3D G3DSA:1.10.1200.10 19 99 2.1E-35 T 14-10-2018 IPR036736 ACP-like superfamily YP_1654 997101de1f565c478b0e346383b995b0 2041 SUPERFAMILY SSF52777 1495 1686 5.56E-20 T 14-10-2018 YP_1654 997101de1f565c478b0e346383b995b0 2041 SUPERFAMILY SSF52777 302 542 1.11E-37 T 14-10-2018 YP_1654 997101de1f565c478b0e346383b995b0 2041 SUPERFAMILY SSF52777 1675 1914 5.0E-40 T 14-10-2018 YP_1654 997101de1f565c478b0e346383b995b0 2041 ProSitePatterns PS00455 Putative AMP-binding domain signature. 715 726 - T 14-10-2018 IPR020845 AMP-binding, conserved site YP_1654 997101de1f565c478b0e346383b995b0 2041 ProSitePatterns PS00012 Phosphopantetheine attachment site. 53 68 - T 14-10-2018 IPR006162 Phosphopantetheine attachment site YP_1654 997101de1f565c478b0e346383b995b0 2041 Gene3D G3DSA:1.10.1200.10 1948 2030 3.6E-11 T 14-10-2018 IPR036736 ACP-like superfamily YP_1654 997101de1f565c478b0e346383b995b0 2041 SUPERFAMILY SSF53335 1170 1326 1.69E-16 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1654 997101de1f565c478b0e346383b995b0 2041 SUPERFAMILY SSF47336 1952 2020 1.87E-9 T 14-10-2018 IPR036736 ACP-like superfamily YP_1654 997101de1f565c478b0e346383b995b0 2041 SUPERFAMILY SSF47336 27 130 3.89E-9 T 14-10-2018 IPR036736 ACP-like superfamily YP_1654 997101de1f565c478b0e346383b995b0 2041 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 600 996 5.6E-119 T 14-10-2018 IPR010071 Amino acid adenylation domain YP_1654 997101de1f565c478b0e346383b995b0 2041 Gene3D G3DSA:3.30.300.30 1316 1403 9.4E-13 T 14-10-2018 YP_1654 997101de1f565c478b0e346383b995b0 2041 Pfam PF00668 Condensation domain 156 541 5.9E-23 T 14-10-2018 IPR001242 Condensation domain YP_1654 997101de1f565c478b0e346383b995b0 2041 Pfam PF00668 Condensation domain 1536 1911 2.4E-26 T 14-10-2018 IPR001242 Condensation domain YP_1654 997101de1f565c478b0e346383b995b0 2041 Gene3D G3DSA:3.40.50.12780 570 964 2.9E-112 T 14-10-2018 YP_1654 997101de1f565c478b0e346383b995b0 2041 SUPERFAMILY SSF52777 123 295 1.56E-18 T 14-10-2018 YP_1654 997101de1f565c478b0e346383b995b0 2041 SUPERFAMILY SSF56801 555 1428 1.96E-137 T 14-10-2018 YP_1654 997101de1f565c478b0e346383b995b0 2041 Gene3D G3DSA:1.10.1200.10 1404 1486 2.2E-19 T 14-10-2018 IPR036736 ACP-like superfamily YP_1654 997101de1f565c478b0e346383b995b0 2041 Pfam PF00501 AMP-binding enzyme 581 971 1.0E-92 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YP_1654 997101de1f565c478b0e346383b995b0 2041 Pfam PF08242 Methyltransferase domain 1188 1285 3.4E-9 T 14-10-2018 IPR013217 Methyltransferase type 12 YP_1654 997101de1f565c478b0e346383b995b0 2041 Gene3D G3DSA:3.30.300.30 966 1070 7.5E-13 T 14-10-2018 YP_1654 997101de1f565c478b0e346383b995b0 2041 Gene3D G3DSA:3.30.559.30 301 549 9.9E-73 T 14-10-2018 YP_1654 997101de1f565c478b0e346383b995b0 2041 Gene3D G3DSA:3.30.559.30 1674 1918 2.3E-79 T 14-10-2018 YP_1654 997101de1f565c478b0e346383b995b0 2041 SUPERFAMILY SSF47336 1411 1481 5.61E-15 T 14-10-2018 IPR036736 ACP-like superfamily YP_0077 daa2a046b81ff4fa049b4f90e8d74b16 319 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 20 317 9.9E-68 T 14-10-2018 IPR010106 Recombination-promoting nuclease RpnA YP_0077 daa2a046b81ff4fa049b4f90e8d74b16 319 Pfam PF04754 Putative transposase, YhgA-like 19 220 1.2E-87 T 14-10-2018 IPR006842 Transposase (putative), YhgA-like YP_0554 b077dd46a2ef9096a2c759a68c902cb0 247 SUPERFAMILY SSF56655 2 243 3.66E-73 T 14-10-2018 YP_0554 b077dd46a2ef9096a2c759a68c902cb0 247 Gene3D G3DSA:3.30.540.10 2 147 2.8E-44 T 14-10-2018 YP_0554 b077dd46a2ef9096a2c759a68c902cb0 247 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 2 245 1.2E-102 T 14-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 YP_0554 b077dd46a2ef9096a2c759a68c902cb0 247 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 14-10-2018 IPR020583 Inositol monophosphatase, metal-binding site YP_0554 b077dd46a2ef9096a2c759a68c902cb0 247 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 2 247 40.924 T 14-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 YP_0554 b077dd46a2ef9096a2c759a68c902cb0 247 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 205 219 - T 14-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 YP_0554 b077dd46a2ef9096a2c759a68c902cb0 247 Pfam PF00459 Inositol monophosphatase family 8 232 5.2E-48 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 YP_0554 b077dd46a2ef9096a2c759a68c902cb0 247 Gene3D G3DSA:3.40.190.80 148 246 6.0E-33 T 14-10-2018 YP_0125 9e033452c91f32f23d3db58bcefb3c71 903 Hamap MF_01247 HTH-type transcriptional regulator MalT [malT]. 1 902 36.609 T 14-10-2018 IPR023768 Transcriptional regulator HTH-type, MalT YP_0125 9e033452c91f32f23d3db58bcefb3c71 903 Gene3D G3DSA:3.40.50.300 19 186 2.1E-5 T 14-10-2018 YP_0125 9e033452c91f32f23d3db58bcefb3c71 903 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 853 869 1.3E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_0125 9e033452c91f32f23d3db58bcefb3c71 903 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 869 881 1.3E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_0125 9e033452c91f32f23d3db58bcefb3c71 903 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 839 853 1.3E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_0125 9e033452c91f32f23d3db58bcefb3c71 903 Gene3D G3DSA:1.10.10.10 828 900 5.3E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0125 9e033452c91f32f23d3db58bcefb3c71 903 SUPERFAMILY SSF52540 7 225 9.69E-8 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0125 9e033452c91f32f23d3db58bcefb3c71 903 SUPERFAMILY SSF46894 829 895 1.29E-17 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_0125 9e033452c91f32f23d3db58bcefb3c71 903 Pfam PF00196 Bacterial regulatory proteins, luxR family 838 891 1.4E-19 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_0125 9e033452c91f32f23d3db58bcefb3c71 903 ProSitePatterns PS00622 LuxR-type HTH domain signature. 853 880 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_0125 9e033452c91f32f23d3db58bcefb3c71 903 Gene3D G3DSA:1.25.40.10 439 811 1.6E-94 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_0125 9e033452c91f32f23d3db58bcefb3c71 903 SUPERFAMILY SSF48452 442 806 8.94E-158 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_0125 9e033452c91f32f23d3db58bcefb3c71 903 SMART SM00421 836 893 6.4E-21 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_3092 1ba660d9c3a4d2a54a9ba92c391e9627 428 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 424 2.5E-182 T 14-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YP_3092 1ba660d9c3a4d2a54a9ba92c391e9627 428 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 3.7E-84 T 14-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YP_3092 1ba660d9c3a4d2a54a9ba92c391e9627 428 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 424 43.622 T 14-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YP_3092 1ba660d9c3a4d2a54a9ba92c391e9627 428 Gene3D G3DSA:3.30.1490.20 121 190 6.4E-29 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YP_3092 1ba660d9c3a4d2a54a9ba92c391e9627 428 SUPERFAMILY SSF51246 329 425 6.8E-34 T 14-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 YP_3092 1ba660d9c3a4d2a54a9ba92c391e9627 428 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 14-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YP_3092 1ba660d9c3a4d2a54a9ba92c391e9627 428 SUPERFAMILY SSF52440 1 103 6.76E-36 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YP_3092 1ba660d9c3a4d2a54a9ba92c391e9627 428 Gene3D G3DSA:3.90.600.10 330 425 1.7E-36 T 14-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YP_3092 1ba660d9c3a4d2a54a9ba92c391e9627 428 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 4.5E-34 T 14-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YP_3092 1ba660d9c3a4d2a54a9ba92c391e9627 428 Gene3D G3DSA:3.30.470.20 191 329 2.8E-61 T 14-10-2018 YP_3092 1ba660d9c3a4d2a54a9ba92c391e9627 428 SMART SM01209 103 296 2.3E-141 T 14-10-2018 YP_3092 1ba660d9c3a4d2a54a9ba92c391e9627 428 Gene3D G3DSA:3.40.50.20 2 95 2.7E-37 T 14-10-2018 YP_3092 1ba660d9c3a4d2a54a9ba92c391e9627 428 SMART SM01210 330 424 3.1E-55 T 14-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YP_3092 1ba660d9c3a4d2a54a9ba92c391e9627 428 SUPERFAMILY SSF56059 104 323 1.38E-67 T 14-10-2018 YP_3092 1ba660d9c3a4d2a54a9ba92c391e9627 428 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 332 422 4.4E-29 T 14-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YP_1957 cc59cf5983df8e82f571ab2413c360c8 334 SUPERFAMILY SSF55347 152 315 4.46E-81 T 14-10-2018 YP_1957 cc59cf5983df8e82f571ab2413c360c8 334 SMART SM00846 6 153 6.0E-98 T 14-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_1957 cc59cf5983df8e82f571ab2413c360c8 334 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 151 158 - T 14-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_1957 cc59cf5983df8e82f571ab2413c360c8 334 SUPERFAMILY SSF51735 6 169 2.5E-69 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1957 cc59cf5983df8e82f571ab2413c360c8 334 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 6 105 6.2E-41 T 14-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_1957 cc59cf5983df8e82f571ab2413c360c8 334 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 158 315 2.8E-71 T 14-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_1957 cc59cf5983df8e82f571ab2413c360c8 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 231 248 1.1E-46 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_1957 cc59cf5983df8e82f571ab2413c360c8 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 1.1E-46 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_1957 cc59cf5983df8e82f571ab2413c360c8 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 271 286 1.1E-46 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_1957 cc59cf5983df8e82f571ab2413c360c8 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 147 165 1.1E-46 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_1957 cc59cf5983df8e82f571ab2413c360c8 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 174 190 1.1E-46 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_1957 cc59cf5983df8e82f571ab2413c360c8 334 Gene3D G3DSA:3.40.50.720 7 329 1.4E-158 T 14-10-2018 YP_1957 cc59cf5983df8e82f571ab2413c360c8 334 PIRSF PIRSF000149 4 334 1.1E-134 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_1957 cc59cf5983df8e82f571ab2413c360c8 334 Gene3D G3DSA:3.30.360.10 152 317 1.4E-158 T 14-10-2018 YP_1957 cc59cf5983df8e82f571ab2413c360c8 334 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 7 327 5.7E-137 T 14-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_1867 231405e9c8d491ad986008ebef9115c2 133 Pfam PF04247 Invasion gene expression up-regulator, SirB 5 126 1.1E-44 T 14-10-2018 IPR007360 Invasion gene expression up-regulator, SirB YP_1867 231405e9c8d491ad986008ebef9115c2 133 PIRSF PIRSF005610 1 125 7.6E-28 T 14-10-2018 IPR007360 Invasion gene expression up-regulator, SirB YP_0646 b161ce61dbfc24c9e929390e9a593f07 431 Pfam PF00589 Phage integrase family 217 395 7.8E-19 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YP_0646 b161ce61dbfc24c9e929390e9a593f07 431 Gene3D G3DSA:3.30.160.390 13 100 8.7E-37 T 14-10-2018 IPR038488 Integrase, DNA-binding domain superfamily YP_0646 b161ce61dbfc24c9e929390e9a593f07 431 SUPERFAMILY SSF56349 109 397 1.41E-46 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YP_0646 b161ce61dbfc24c9e929390e9a593f07 431 Gene3D G3DSA:1.10.443.10 216 404 2.5E-14 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YP_0646 b161ce61dbfc24c9e929390e9a593f07 431 Gene3D G3DSA:1.10.150.130 101 215 1.0E-25 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal YP_0646 b161ce61dbfc24c9e929390e9a593f07 431 Pfam PF13356 Arm DNA-binding domain 15 99 1.6E-20 T 14-10-2018 IPR025166 Integrase, DNA-binding domain YP_2418 04fd95fc20eaba2ccfb5880686c9dca6 436 SUPERFAMILY SSF53901 15 295 5.61E-65 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_2418 04fd95fc20eaba2ccfb5880686c9dca6 436 ProSitePatterns PS00099 Thiolases active site. 417 430 - T 14-10-2018 IPR020610 Thiolase, active site GO:0016747 YP_2418 04fd95fc20eaba2ccfb5880686c9dca6 436 ProSitePatterns PS00737 Thiolases signature 2. 382 398 - T 14-10-2018 IPR020613 Thiolase, conserved site GO:0016747 YP_2418 04fd95fc20eaba2ccfb5880686c9dca6 436 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 17 434 9.9E-133 T 14-10-2018 IPR002155 Thiolase GO:0016747 YP_2418 04fd95fc20eaba2ccfb5880686c9dca6 436 SUPERFAMILY SSF53901 297 435 5.43E-32 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_2418 04fd95fc20eaba2ccfb5880686c9dca6 436 Hamap MF_01618 3-ketoacyl-CoA thiolase [fadI]. 2 436 69.81 T 14-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 YP_2418 04fd95fc20eaba2ccfb5880686c9dca6 436 Pfam PF00108 Thiolase, N-terminal domain 15 288 1.4E-63 T 14-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 YP_2418 04fd95fc20eaba2ccfb5880686c9dca6 436 PIRSF PIRSF000429 9 436 6.8E-125 T 14-10-2018 IPR002155 Thiolase GO:0016747 YP_2418 04fd95fc20eaba2ccfb5880686c9dca6 436 Pfam PF02803 Thiolase, C-terminal domain 296 434 1.7E-36 T 14-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 YP_2418 04fd95fc20eaba2ccfb5880686c9dca6 436 TIGRFAM TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI 7 436 9.7E-255 T 14-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 YP_2418 04fd95fc20eaba2ccfb5880686c9dca6 436 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 95 113 - T 14-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 YP_2418 04fd95fc20eaba2ccfb5880686c9dca6 436 Gene3D G3DSA:3.40.47.10 7 435 2.6E-117 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_0216 4607bef6f01d5b77e0d11f76a7676fcb 84 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 76 7.8E-38 T 14-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0216 4607bef6f01d5b77e0d11f76a7676fcb 84 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 5 80 25.043 T 14-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0216 4607bef6f01d5b77e0d11f76a7676fcb 84 ProSitePatterns PS00056 Ribosomal protein S17 signature. 56 68 - T 14-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0216 4607bef6f01d5b77e0d11f76a7676fcb 84 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 6 76 7.0E-36 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0216 4607bef6f01d5b77e0d11f76a7676fcb 84 SUPERFAMILY SSF50249 5 82 2.7E-33 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_0216 4607bef6f01d5b77e0d11f76a7676fcb 84 Pfam PF00366 Ribosomal protein S17 10 76 1.6E-33 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0216 4607bef6f01d5b77e0d11f76a7676fcb 84 PRINTS PR00973 Ribosomal protein S17 family signature 56 66 9.2E-14 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0216 4607bef6f01d5b77e0d11f76a7676fcb 84 PRINTS PR00973 Ribosomal protein S17 family signature 24 47 9.2E-14 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0216 4607bef6f01d5b77e0d11f76a7676fcb 84 PRINTS PR00973 Ribosomal protein S17 family signature 66 73 9.2E-14 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0216 4607bef6f01d5b77e0d11f76a7676fcb 84 Gene3D G3DSA:2.40.50.140 1 84 5.9E-40 T 14-10-2018 YP_3405 7221e3d67a756537531082180e87d6ab 609 Gene3D G3DSA:2.60.40.3110 268 356 2.5E-29 T 14-10-2018 YP_3405 7221e3d67a756537531082180e87d6ab 609 Pfam PF00577 Outer membrane usher protein 197 604 2.6E-124 T 14-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YP_3405 7221e3d67a756537531082180e87d6ab 609 Pfam PF13954 PapC N-terminal domain 35 178 2.9E-33 T 14-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 YP_3405 7221e3d67a756537531082180e87d6ab 609 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 310 320 - T 14-10-2018 IPR018030 Fimbrial membrane usher, conserved site YP_3405 7221e3d67a756537531082180e87d6ab 609 SUPERFAMILY SSF141729 34 154 6.41E-29 T 14-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 YP_3405 7221e3d67a756537531082180e87d6ab 609 Gene3D G3DSA:3.10.20.410 34 155 2.0E-21 T 14-10-2018 YP_2121 9bd6cce06dffd57749c4b3074c7136f2 313 SUPERFAMILY SSF52402 17 236 3.26E-54 T 14-10-2018 YP_2121 9bd6cce06dffd57749c4b3074c7136f2 313 Pfam PF01171 PP-loop family 42 203 1.2E-12 T 14-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 YP_2121 9bd6cce06dffd57749c4b3074c7136f2 313 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 10 271 57.377 T 14-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 YP_2121 9bd6cce06dffd57749c4b3074c7136f2 313 Gene3D G3DSA:3.40.50.620 3 267 2.1E-46 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_2121 9bd6cce06dffd57749c4b3074c7136f2 313 PIRSF PIRSF004976 2 270 6.3E-76 T 14-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 YP_2261 549de01cc25e69c7d41b76cab9594fc4 202 TIGRFAM TIGR00172 maf: septum formation protein Maf 6 188 2.8E-55 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 YP_2261 549de01cc25e69c7d41b76cab9594fc4 202 Gene3D G3DSA:3.90.950.10 6 198 6.8E-58 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like YP_2261 549de01cc25e69c7d41b76cab9594fc4 202 Hamap MF_00528 Septum formation protein Maf [maf]. 7 195 28.213 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 YP_2261 549de01cc25e69c7d41b76cab9594fc4 202 Pfam PF02545 Maf-like protein 7 189 2.2E-41 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 YP_2261 549de01cc25e69c7d41b76cab9594fc4 202 SUPERFAMILY SSF52972 5 190 2.68E-56 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like YP_2261 549de01cc25e69c7d41b76cab9594fc4 202 PIRSF PIRSF006305 1 197 1.2E-37 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 YP_0620 1115c75298b10bfc68d55043ca9521c1 378 SUPERFAMILY SSF51338 2 377 9.5E-8 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YP_0620 1115c75298b10bfc68d55043ca9521c1 378 SUPERFAMILY SSF51556 50 345 1.13E-19 T 14-10-2018 IPR032466 Metal-dependent hydrolase YP_0620 1115c75298b10bfc68d55043ca9521c1 378 Gene3D G3DSA:2.30.40.10 341 376 6.4E-8 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YP_0620 1115c75298b10bfc68d55043ca9521c1 378 TIGRFAM TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM 2 378 1.9E-151 T 14-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YP_0620 1115c75298b10bfc68d55043ca9521c1 378 Gene3D G3DSA:3.20.20.140 1 248 5.9E-6 T 14-10-2018 YP_0620 1115c75298b10bfc68d55043ca9521c1 378 PIRSF PIRSF038971 1 378 1.9E-153 T 14-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YP_0620 1115c75298b10bfc68d55043ca9521c1 378 Gene3D G3DSA:3.20.20.140 308 340 6.4E-8 T 14-10-2018 YP_0620 1115c75298b10bfc68d55043ca9521c1 378 Pfam PF07969 Amidohydrolase family 214 366 6.2E-11 T 14-10-2018 IPR013108 Amidohydrolase 3 YP_1307 36d677de6e94312db72e9c7e140fb517 213 SUPERFAMILY SSF50104 24 87 1.99E-10 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily YP_1307 36d677de6e94312db72e9c7e140fb517 213 TIGRFAM TIGR02178 yeiP: elongation factor P-like protein YeiP 26 212 2.5E-96 T 14-10-2018 IPR011897 Translation elongation factor P-like, YeiP YP_1307 36d677de6e94312db72e9c7e140fb517 213 SMART SM00841 156 211 8.3E-24 T 14-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 YP_1307 36d677de6e94312db72e9c7e140fb517 213 Hamap MF_00646 Elongation factor P-like protein [yeiP]. 25 212 42.731 T 14-10-2018 IPR011897 Translation elongation factor P-like, YeiP YP_1307 36d677de6e94312db72e9c7e140fb517 213 Gene3D G3DSA:2.40.50.140 89 153 2.2E-15 T 14-10-2018 YP_1307 36d677de6e94312db72e9c7e140fb517 213 SMART SM01185 92 148 3.6E-14 T 14-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 YP_1307 36d677de6e94312db72e9c7e140fb517 213 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 26 84 8.1E-16 T 14-10-2018 IPR013185 Translation elongation factor, KOW-like YP_1307 36d677de6e94312db72e9c7e140fb517 213 Gene3D G3DSA:2.40.50.140 155 212 3.3E-19 T 14-10-2018 YP_1307 36d677de6e94312db72e9c7e140fb517 213 Gene3D G3DSA:2.30.30.30 22 88 3.9E-15 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 YP_1307 36d677de6e94312db72e9c7e140fb517 213 PIRSF PIRSF005901 23 213 1.0E-59 T 14-10-2018 IPR020599 Translation elongation factor P/YeiP YP_1307 36d677de6e94312db72e9c7e140fb517 213 Pfam PF01132 Elongation factor P (EF-P) OB domain 93 147 6.1E-14 T 14-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 YP_1307 36d677de6e94312db72e9c7e140fb517 213 Pfam PF09285 Elongation factor P, C-terminal 156 211 2.3E-17 T 14-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 YP_1307 36d677de6e94312db72e9c7e140fb517 213 ProSitePatterns PS01275 Elongation factor P signature. 177 196 - T 14-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site YP_1307 36d677de6e94312db72e9c7e140fb517 213 SUPERFAMILY SSF50249 155 212 3.37E-14 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_1307 36d677de6e94312db72e9c7e140fb517 213 SUPERFAMILY SSF50249 90 153 4.71E-11 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_3363 d1d999c08d6135b2936d866075a4f8a0 300 SUPERFAMILY SSF161098 93 280 1.57E-29 T 14-10-2018 IPR035906 MetI-like superfamily YP_3363 d1d999c08d6135b2936d866075a4f8a0 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 299 7.1E-30 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_3363 d1d999c08d6135b2936d866075a4f8a0 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 17 69 7.4E-14 T 14-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YP_3363 d1d999c08d6135b2936d866075a4f8a0 300 Gene3D G3DSA:1.10.3720.10 88 295 9.2E-24 T 14-10-2018 IPR035906 MetI-like superfamily YP_0124 6c04c2b01855f948afc0380516def313 144 Pfam PF00581 Rhodanese-like domain 50 133 2.7E-14 T 14-10-2018 IPR001763 Rhodanese-like domain YP_0124 6c04c2b01855f948afc0380516def313 144 SUPERFAMILY SSF52821 35 138 2.75E-27 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily YP_0124 6c04c2b01855f948afc0380516def313 144 Gene3D G3DSA:3.40.250.10 36 143 2.5E-28 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily YP_0124 6c04c2b01855f948afc0380516def313 144 SMART SM00450 42 137 5.0E-21 T 14-10-2018 IPR001763 Rhodanese-like domain YP_0124 6c04c2b01855f948afc0380516def313 144 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 37 140 32.525 T 14-10-2018 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927 YP_1500 17db67576bf4fe6c7f8ffe681bacb055 422 Pfam PF01547 Bacterial extracellular solute-binding protein 36 333 9.4E-56 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein YP_1500 17db67576bf4fe6c7f8ffe681bacb055 422 Gene3D G3DSA:3.40.190.10 141 412 4.0E-109 T 14-10-2018 YP_1500 17db67576bf4fe6c7f8ffe681bacb055 422 Gene3D G3DSA:3.40.190.10 39 372 4.0E-109 T 14-10-2018 YP_1500 17db67576bf4fe6c7f8ffe681bacb055 422 SUPERFAMILY SSF53850 22 420 6.09E-78 T 14-10-2018 YP_1796 17f6243ba2d78451724c199526c330c4 723 SUPERFAMILY SSF55052 182 245 2.62E-19 T 14-10-2018 IPR035891 CheY-binding domain of CheA YP_1796 17f6243ba2d78451724c199526c330c4 723 Gene3D G3DSA:2.40.50.180 598 662 6.5E-38 T 14-10-2018 YP_1796 17f6243ba2d78451724c199526c330c4 723 Pfam PF09078 CheY binding 183 245 1.1E-23 T 14-10-2018 IPR015162 CheY binding YP_1796 17f6243ba2d78451724c199526c330c4 723 SMART SM00260 567 707 8.8E-42 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 YP_1796 17f6243ba2d78451724c199526c330c4 723 SUPERFAMILY SSF47384 328 391 3.06E-15 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_1796 17f6243ba2d78451724c199526c330c4 723 Gene3D G3DSA:2.30.30.40 575 703 6.5E-38 T 14-10-2018 YP_1796 17f6243ba2d78451724c199526c330c4 723 Pfam PF01627 Hpt domain 9 104 2.3E-19 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 YP_1796 17f6243ba2d78451724c199526c330c4 723 Gene3D G3DSA:1.10.287.560 327 390 1.1E-16 T 14-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 YP_1796 17f6243ba2d78451724c199526c330c4 723 PRINTS PR00344 Bacterial sensor protein C-terminal signature 480 494 1.8E-9 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_1796 17f6243ba2d78451724c199526c330c4 723 PRINTS PR00344 Bacterial sensor protein C-terminal signature 535 553 1.8E-9 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_1796 17f6243ba2d78451724c199526c330c4 723 PRINTS PR00344 Bacterial sensor protein C-terminal signature 559 572 1.8E-9 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_1796 17f6243ba2d78451724c199526c330c4 723 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 438 574 3.1E-15 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_1796 17f6243ba2d78451724c199526c330c4 723 SUPERFAMILY SSF55874 393 573 3.27E-31 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_1796 17f6243ba2d78451724c199526c330c4 723 SMART SM01231 327 390 2.0E-20 T 14-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 YP_1796 17f6243ba2d78451724c199526c330c4 723 Gene3D G3DSA:1.20.120.160 1 149 2.0E-43 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 YP_1796 17f6243ba2d78451724c199526c330c4 723 Gene3D G3DSA:3.30.70.400 177 248 6.5E-26 T 14-10-2018 IPR035891 CheY-binding domain of CheA YP_1796 17f6243ba2d78451724c199526c330c4 723 SUPERFAMILY SSF50341 574 706 9.81E-31 T 14-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 YP_1796 17f6243ba2d78451724c199526c330c4 723 SMART SM00387 435 575 2.7E-23 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_1796 17f6243ba2d78451724c199526c330c4 723 SMART SM00073 5 102 2.7E-29 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 YP_1796 17f6243ba2d78451724c199526c330c4 723 Gene3D G3DSA:3.30.565.10 391 574 1.4E-50 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_1796 17f6243ba2d78451724c199526c330c4 723 Pfam PF01584 CheW-like domain 580 706 1.4E-24 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 YP_1796 17f6243ba2d78451724c199526c330c4 723 SUPERFAMILY SSF47226 7 126 1.7E-29 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 YP_1796 17f6243ba2d78451724c199526c330c4 723 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 328 390 9.2E-17 T 14-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 YP_1764 6a1a8190fc03a3352209ff6fb17ddbb6 223 SMART SM00448 1 112 2.4E-39 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1764 6a1a8190fc03a3352209ff6fb17ddbb6 223 SMART SM00862 145 220 1.6E-20 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_1764 6a1a8190fc03a3352209ff6fb17ddbb6 223 Gene3D G3DSA:3.40.50.2300 1 120 6.6E-40 T 14-10-2018 YP_1764 6a1a8190fc03a3352209ff6fb17ddbb6 223 SUPERFAMILY SSF52172 1 175 1.34E-38 T 14-10-2018 IPR011006 CheY-like superfamily YP_1764 6a1a8190fc03a3352209ff6fb17ddbb6 223 Gene3D G3DSA:1.10.10.10 123 223 5.5E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1764 6a1a8190fc03a3352209ff6fb17ddbb6 223 Pfam PF00072 Response regulator receiver domain 3 112 3.4E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1764 6a1a8190fc03a3352209ff6fb17ddbb6 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 6.1E-21 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_4024 f80e62d218e1d46734910de6fa285a29 346 Gene3D G3DSA:3.40.190.10 103 278 1.5E-129 T 14-10-2018 YP_4024 f80e62d218e1d46734910de6fa285a29 346 SUPERFAMILY SSF53850 28 339 3.31E-95 T 14-10-2018 YP_4024 f80e62d218e1d46734910de6fa285a29 346 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 29 335 9.2E-128 T 14-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 YP_4024 f80e62d218e1d46734910de6fa285a29 346 PIRSF PIRSF002756 1 338 1.2E-104 T 14-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 YP_4024 f80e62d218e1d46734910de6fa285a29 346 Gene3D G3DSA:3.40.190.10 29 326 1.5E-129 T 14-10-2018 YP_4024 f80e62d218e1d46734910de6fa285a29 346 Pfam PF12849 PBP superfamily domain 23 306 5.7E-61 T 14-10-2018 IPR024370 PBP domain YP_3712 7eb2513d376e655a2ec202a11ca79369 636 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 632 36.915 T 14-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 602 4.5E-291 T 14-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 Gene3D G3DSA:2.60.34.10 383 523 8.7E-68 T 14-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 Pfam PF00012 Hsp70 protein 4 602 2.6E-266 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 SUPERFAMILY SSF100920 384 540 1.96E-61 T 14-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 192 205 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 365 385 3.0E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 138 158 3.0E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 198 208 3.0E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 3 16 3.0E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 469 485 3.0E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 31 43 3.0E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 54 62 3.0E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 334 350 3.0E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 388 407 3.0E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 SUPERFAMILY SSF53067 187 382 8.43E-68 T 14-10-2018 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 Gene3D G3DSA:3.30.420.40 5 379 5.2E-171 T 14-10-2018 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 Gene3D G3DSA:3.90.640.10 229 316 5.2E-171 T 14-10-2018 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 Gene3D G3DSA:1.20.1270.10 524 603 5.9E-29 T 14-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 SUPERFAMILY SSF53067 4 183 9.39E-66 T 14-10-2018 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 Gene3D G3DSA:3.30.420.40 180 366 5.2E-171 T 14-10-2018 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 SUPERFAMILY SSF100934 535 608 3.73E-6 T 14-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 YP_3712 7eb2513d376e655a2ec202a11ca79369 636 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 YP_0783 3ece99df4ab6998ff59da69adb16ae16 273 Gene3D G3DSA:3.40.50.1000 6 254 8.1E-55 T 14-10-2018 IPR023214 HAD superfamily YP_0783 3ece99df4ab6998ff59da69adb16ae16 273 Hamap MF_01847 HMP-PP phosphatase [cof]. 1 273 66.384 T 14-10-2018 IPR023938 HMP-PP phosphatase GO:0016818 YP_0783 3ece99df4ab6998ff59da69adb16ae16 273 Gene3D G3DSA:3.30.1240.10 82 184 8.1E-55 T 14-10-2018 YP_0783 3ece99df4ab6998ff59da69adb16ae16 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 229 2.8E-34 T 14-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 YP_0783 3ece99df4ab6998ff59da69adb16ae16 273 SUPERFAMILY SSF56784 1 262 1.28E-62 T 14-10-2018 IPR036412 HAD-like superfamily YP_0783 3ece99df4ab6998ff59da69adb16ae16 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 258 6.0E-54 T 14-10-2018 YP_0783 3ece99df4ab6998ff59da69adb16ae16 273 ProSitePatterns PS01229 Hypothetical cof family signature 2. 210 232 - T 14-10-2018 YP_0783 3ece99df4ab6998ff59da69adb16ae16 273 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 14-10-2018 YP_0783 3ece99df4ab6998ff59da69adb16ae16 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 258 1.6E-54 T 14-10-2018 IPR000150 Cof family GO:0016787 YP_2266 b55fa417400f894776178115b8a3742b 81 Pfam PF06183 DinI-like family 14 78 1.5E-29 T 14-10-2018 IPR010391 DNA damage-inducible protein DinI-like YP_2266 b55fa417400f894776178115b8a3742b 81 SUPERFAMILY SSF54857 1 80 1.01E-29 T 14-10-2018 IPR036687 DinI-like superfamily YP_2266 b55fa417400f894776178115b8a3742b 81 Gene3D G3DSA:3.30.910.10 1 81 5.6E-36 T 14-10-2018 IPR036687 DinI-like superfamily YP_1611 602f1f560b63794d563a2da21eb67472 76 SUPERFAMILY SSF46575 1 76 9.94E-36 T 14-10-2018 YP_1611 602f1f560b63794d563a2da21eb67472 76 Gene3D G3DSA:1.20.58.250 1 76 8.1E-36 T 14-10-2018 IPR036745 DNA polymerase III-theta superfamily GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_1611 602f1f560b63794d563a2da21eb67472 76 ProDom PD057609 DNA POLYMERASE THETA SUBUNIT TRANSFERASE III NUCLEOTIDYLTRANSFERASE III DNA-DIRECTED REPLICATION 4 76 6.0E-36 T 14-10-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_1611 602f1f560b63794d563a2da21eb67472 76 Pfam PF06440 DNA polymerase III, theta subunit 3 71 6.2E-38 T 14-10-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_1979 bc4c641fbaa6d11fad933937f196a8f9 545 Gene3D G3DSA:3.40.190.10 43 526 1.4E-210 T 14-10-2018 YP_1979 bc4c641fbaa6d11fad933937f196a8f9 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 465 1.0E-86 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain YP_1979 bc4c641fbaa6d11fad933937f196a8f9 545 PIRSF PIRSF002741 1 545 1.5E-113 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 YP_1979 bc4c641fbaa6d11fad933937f196a8f9 545 Gene3D G3DSA:3.10.105.10 299 514 1.4E-210 T 14-10-2018 YP_1979 bc4c641fbaa6d11fad933937f196a8f9 545 Gene3D G3DSA:3.90.76.10 73 196 1.4E-210 T 14-10-2018 YP_1979 bc4c641fbaa6d11fad933937f196a8f9 545 SUPERFAMILY SSF53850 38 527 1.51E-145 T 14-10-2018 YP_1979 bc4c641fbaa6d11fad933937f196a8f9 545 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 88 110 - T 14-10-2018 IPR023765 Solute-binding protein family 5, conserved site YP_3355 158eed2ee23d93b712877abed5f90805 429 Pfam PF00375 Sodium:dicarboxylate symporter family 9 401 1.1E-111 T 14-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 YP_3355 158eed2ee23d93b712877abed5f90805 429 SUPERFAMILY SSF118215 9 401 1.05E-121 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 YP_3355 158eed2ee23d93b712877abed5f90805 429 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 36 51 - T 14-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site YP_3355 158eed2ee23d93b712877abed5f90805 429 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 295 318 - T 14-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site YP_3355 158eed2ee23d93b712877abed5f90805 429 PRINTS PR00173 Glutamate-aspartate symporter signature 327 346 9.5E-29 T 14-10-2018 YP_3355 158eed2ee23d93b712877abed5f90805 429 PRINTS PR00173 Glutamate-aspartate symporter signature 7 27 9.5E-29 T 14-10-2018 YP_3355 158eed2ee23d93b712877abed5f90805 429 PRINTS PR00173 Glutamate-aspartate symporter signature 292 318 9.5E-29 T 14-10-2018 YP_3355 158eed2ee23d93b712877abed5f90805 429 PRINTS PR00173 Glutamate-aspartate symporter signature 192 211 9.5E-29 T 14-10-2018 YP_3355 158eed2ee23d93b712877abed5f90805 429 PRINTS PR00173 Glutamate-aspartate symporter signature 145 167 9.5E-29 T 14-10-2018 YP_3355 158eed2ee23d93b712877abed5f90805 429 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 9.5E-29 T 14-10-2018 YP_3355 158eed2ee23d93b712877abed5f90805 429 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 2 428 38.62 T 14-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 YP_3355 158eed2ee23d93b712877abed5f90805 429 Gene3D G3DSA:1.10.3860.10 1 418 1.9E-119 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 Gene3D G3DSA:3.40.50.1370 6 329 3.5E-139 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 50 64 1.9E-32 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 83 96 1.9E-32 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 229 239 1.9E-32 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 123 137 1.9E-32 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 311 322 1.9E-32 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 Gene3D G3DSA:3.40.50.1370 150 319 3.5E-139 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 7 332 5.4E-135 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 SUPERFAMILY SSF53671 1 333 1.83E-100 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 156 330 3.4E-54 T 14-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 52 59 - T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 7 147 2.0E-47 T 14-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 6 333 83.799 T 14-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 6.8E-26 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 134 145 6.8E-26 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 297 320 6.8E-26 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YP_0638 a29c6903f63b1965d4ee598b5bc875ea 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 276 6.8E-26 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YP_1845 a55b9f65a8e641af4f8b099dd32c1cf9 156 SUPERFAMILY SSF51182 35 155 3.56E-29 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily YP_1845 a55b9f65a8e641af4f8b099dd32c1cf9 156 Pfam PF07883 Cupin domain 66 132 2.5E-10 T 14-10-2018 IPR013096 Cupin 2, conserved barrel YP_1845 a55b9f65a8e641af4f8b099dd32c1cf9 156 Gene3D G3DSA:2.60.120.10 26 155 7.1E-46 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_1667 9d0d4ba5fd6b102f32603f191face3f8 210 Pfam PF00072 Response regulator receiver domain 5 113 1.1E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1667 9d0d4ba5fd6b102f32603f191face3f8 210 SMART SM00421 147 204 7.7E-25 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1667 9d0d4ba5fd6b102f32603f191face3f8 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 1.1E-21 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1667 9d0d4ba5fd6b102f32603f191face3f8 210 SMART SM00448 3 116 1.1E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1667 9d0d4ba5fd6b102f32603f191face3f8 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1667 9d0d4ba5fd6b102f32603f191face3f8 210 SUPERFAMILY SSF46894 141 210 1.36E-20 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_1667 9d0d4ba5fd6b102f32603f191face3f8 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 5.2E-13 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1667 9d0d4ba5fd6b102f32603f191face3f8 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 5.2E-13 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1667 9d0d4ba5fd6b102f32603f191face3f8 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 5.2E-13 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1667 9d0d4ba5fd6b102f32603f191face3f8 210 Gene3D G3DSA:3.40.50.12740 4 210 1.7E-54 T 14-10-2018 YP_1667 9d0d4ba5fd6b102f32603f191face3f8 210 SUPERFAMILY SSF52172 2 131 3.98E-30 T 14-10-2018 IPR011006 CheY-like superfamily YP_0224 4dcad5d817dc46b1d4f40d1f04561136 167 SUPERFAMILY SSF54768 9 75 4.08E-23 T 14-10-2018 YP_0224 4dcad5d817dc46b1d4f40d1f04561136 167 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 163 1.8E-70 T 14-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 YP_0224 4dcad5d817dc46b1d4f40d1f04561136 167 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 14-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site YP_0224 4dcad5d817dc46b1d4f40d1f04561136 167 Gene3D G3DSA:3.30.230.10 74 167 1.3E-38 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_0224 4dcad5d817dc46b1d4f40d1f04561136 167 SUPERFAMILY SSF54211 79 159 5.06E-27 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0224 4dcad5d817dc46b1d4f40d1f04561136 167 Gene3D G3DSA:3.30.160.20 1 73 2.3E-33 T 14-10-2018 YP_0224 4dcad5d817dc46b1d4f40d1f04561136 167 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 34.65 T 14-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 YP_0224 4dcad5d817dc46b1d4f40d1f04561136 167 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 74 1.8E-28 T 14-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 YP_0224 4dcad5d817dc46b1d4f40d1f04561136 167 Pfam PF03719 Ribosomal protein S5, C-terminal domain 87 157 4.3E-30 T 14-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 YP_2945 31f7a69b39f6c2d1b79baf69d94de198 134 Gene3D G3DSA:3.30.1330.40 2 134 1.0E-31 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YP_2945 31f7a69b39f6c2d1b79baf69d94de198 134 SUPERFAMILY SSF55298 4 133 4.87E-28 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YP_2945 31f7a69b39f6c2d1b79baf69d94de198 134 Pfam PF01042 Endoribonuclease L-PSP 18 132 1.3E-21 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 YP_0474 04c61b7d00d93e5c8ea3069ef9b0da4c 350 Gene3D G3DSA:3.90.180.10 34 344 1.8E-119 T 14-10-2018 YP_0474 04c61b7d00d93e5c8ea3069ef9b0da4c 350 Pfam PF00107 Zinc-binding dehydrogenase 175 280 1.6E-28 T 14-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 YP_0474 04c61b7d00d93e5c8ea3069ef9b0da4c 350 SMART SM00829 34 348 1.1E-29 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 YP_0474 04c61b7d00d93e5c8ea3069ef9b0da4c 350 Gene3D G3DSA:3.40.50.720 147 292 1.8E-119 T 14-10-2018 YP_0474 04c61b7d00d93e5c8ea3069ef9b0da4c 350 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 164 185 - T 14-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 YP_0474 04c61b7d00d93e5c8ea3069ef9b0da4c 350 SUPERFAMILY SSF51735 136 297 1.69E-49 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0474 04c61b7d00d93e5c8ea3069ef9b0da4c 350 SUPERFAMILY SSF50129 24 168 4.4E-36 T 14-10-2018 IPR011032 GroES-like superfamily YP_0474 04c61b7d00d93e5c8ea3069ef9b0da4c 350 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 51 111 2.9E-10 T 14-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 Gene3D G3DSA:3.30.565.10 545 706 4.6E-44 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 591 700 5.4E-26 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 SMART SM00387 591 702 9.2E-36 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 Pfam PF00072 Response regulator receiver domain 837 946 3.0E-30 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 SUPERFAMILY SSF47384 463 545 2.94E-19 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 Gene3D G3DSA:3.40.50.2300 830 957 8.1E-39 T 14-10-2018 YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 Pfam PF09456 RcsC Alpha-Beta-Loop (ABL) 719 808 2.7E-32 T 14-10-2018 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal GO:0000160|GO:0004673|GO:0005524|GO:0005886|GO:0006355|GO:0016021|GO:0018106 YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 SUPERFAMILY SSF52172 712 825 8.45E-40 T 14-10-2018 IPR011006 CheY-like superfamily YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 SMART SM00388 479 544 3.3E-19 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 Pfam PF00512 His Kinase A (phospho-acceptor) domain 479 543 9.6E-16 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 PRINTS PR00344 Bacterial sensor protein C-terminal signature 645 655 5.8E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 PRINTS PR00344 Bacterial sensor protein C-terminal signature 686 699 5.8E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 PRINTS PR00344 Bacterial sensor protein C-terminal signature 662 680 5.8E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 PRINTS PR00344 Bacterial sensor protein C-terminal signature 627 641 5.8E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 Gene3D G3DSA:1.10.287.130 456 542 1.4E-22 T 14-10-2018 YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 Hamap MF_00979 Sensor histidine kinase RcsC [rcsC]. 32 951 27.887 T 14-10-2018 IPR030856 Sensor histidine kinase RcsC GO:0000155|GO:0000160|GO:0016021 YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 SUPERFAMILY SSF55874 533 704 1.96E-45 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 Gene3D G3DSA:3.40.50.10970 717 829 1.3E-9 T 14-10-2018 IPR038388 RcsC, C-terminal domain superfamily YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 SMART SM00448 835 946 3.1E-37 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0920 d3448fe42d7ee4b2f9378f342f69a00f 957 SUPERFAMILY SSF52172 835 952 4.98E-38 T 14-10-2018 IPR011006 CheY-like superfamily YP_2079 ce37d319fe88b494ff9c2bca0c0c5471 560 Gene3D G3DSA:3.40.50.1220 191 354 1.8E-52 T 14-10-2018 YP_2079 ce37d319fe88b494ff9c2bca0c0c5471 560 Gene3D G3DSA:3.40.50.970 356 558 4.8E-62 T 14-10-2018 YP_2079 ce37d319fe88b494ff9c2bca0c0c5471 560 SUPERFAMILY SSF52518 5 182 1.39E-60 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_2079 ce37d319fe88b494ff9c2bca0c0c5471 560 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 175 3.4E-59 T 14-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 YP_2079 ce37d319fe88b494ff9c2bca0c0c5471 560 SUPERFAMILY SSF52467 191 355 6.91E-54 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily YP_2079 ce37d319fe88b494ff9c2bca0c0c5471 560 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 387 535 5.4E-48 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 YP_2079 ce37d319fe88b494ff9c2bca0c0c5471 560 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 424 443 - T 14-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 YP_2079 ce37d319fe88b494ff9c2bca0c0c5471 560 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 331 3.5E-40 T 14-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 YP_2079 ce37d319fe88b494ff9c2bca0c0c5471 560 Gene3D G3DSA:3.40.50.970 2 181 2.8E-68 T 14-10-2018 YP_2079 ce37d319fe88b494ff9c2bca0c0c5471 560 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 9 558 5.0E-196 T 14-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 YP_2079 ce37d319fe88b494ff9c2bca0c0c5471 560 SUPERFAMILY SSF52518 362 557 2.08E-65 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 680 699 2.8E-28 T 14-10-2018 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 703 715 2.8E-28 T 14-10-2018 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 607 618 2.8E-28 T 14-10-2018 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 629 639 2.8E-28 T 14-10-2018 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 321 335 2.8E-28 T 14-10-2018 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 472 486 2.8E-28 T 14-10-2018 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 Pfam PF00403 Heavy-metal-associated domain 87 143 5.2E-12 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 Pfam PF00122 E1-E2 ATPase 272 451 3.8E-45 T 14-10-2018 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 SUPERFAMILY SSF56784 470 780 9.42E-52 T 14-10-2018 IPR036412 HAD-like superfamily YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 PRINTS PR00941 Cadmium-transporting ATPase signature 256 276 5.5E-9 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 PRINTS PR00941 Cadmium-transporting ATPase signature 86 95 5.5E-9 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 PRINTS PR00941 Cadmium-transporting ATPase signature 97 118 5.5E-9 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 PRINTS PR00941 Cadmium-transporting ATPase signature 276 292 5.5E-9 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 PRINTS PR00941 Cadmium-transporting ATPase signature 337 353 5.5E-9 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 SUPERFAMILY SSF81665 224 768 4.45E-17 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 Gene3D G3DSA:3.40.1110.10 483 614 2.1E-78 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 Gene3D G3DSA:3.40.50.1000 453 731 2.1E-78 T 14-10-2018 IPR023214 HAD superfamily YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 Pfam PF00702 haloacid dehalogenase-like hydrolase 470 692 3.2E-34 T 14-10-2018 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 474 480 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 Gene3D G3DSA:2.70.150.20 271 376 2.2E-29 T 14-10-2018 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 ProSitePatterns PS01047 Heavy-metal-associated domain. 88 117 - T 14-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 221 782 4.9E-172 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 SUPERFAMILY SSF81653 274 371 3.66E-21 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 Gene3D G3DSA:3.30.70.100 81 151 5.1E-15 T 14-10-2018 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 581 758 4.0E-38 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 244 494 2.4E-35 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YP_3228 0b11a8e225c8eba1490e0dda2b75a91b 788 SUPERFAMILY SSF55008 82 146 1.7E-14 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 YP_3128 13cdb0954a786c378e879d23562c45a9 605 SUPERFAMILY SSF90123 21 329 3.66E-42 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_3128 13cdb0954a786c378e879d23562c45a9 605 SMART SM00382 367 551 4.5E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3128 13cdb0954a786c378e879d23562c45a9 605 Gene3D G3DSA:3.40.50.300 335 570 1.5E-59 T 14-10-2018 YP_3128 13cdb0954a786c378e879d23562c45a9 605 Pfam PF00664 ABC transporter transmembrane region 35 292 4.0E-8 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YP_3128 13cdb0954a786c378e879d23562c45a9 605 SUPERFAMILY SSF52540 331 561 1.87E-55 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3128 13cdb0954a786c378e879d23562c45a9 605 Gene3D G3DSA:1.20.1560.10 19 327 1.2E-33 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_3128 13cdb0954a786c378e879d23562c45a9 605 Pfam PF00005 ABC transporter 358 503 1.4E-26 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3128 13cdb0954a786c378e879d23562c45a9 605 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 26 564 8.2E-222 T 14-10-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 YP_3609 e6ed56964d13c1723b7df235a5c9c889 125 Gene3D G3DSA:1.10.20.30 8 63 1.1E-25 T 14-10-2018 YP_3609 e6ed56964d13c1723b7df235a5c9c889 125 Pfam PF05164 Cell division protein ZapA 22 106 3.3E-17 T 14-10-2018 IPR007838 Cell division protein ZapA-like YP_3609 e6ed56964d13c1723b7df235a5c9c889 125 Hamap MF_02012 Cell division protein ZapA [zapA]. 17 125 32.76 T 14-10-2018 IPR023771 Cell division protein ZapA, eubacteria YP_3609 e6ed56964d13c1723b7df235a5c9c889 125 Gene3D G3DSA:1.20.5.50 65 115 6.5E-6 T 14-10-2018 YP_3609 e6ed56964d13c1723b7df235a5c9c889 125 SUPERFAMILY SSF102829 22 110 3.14E-23 T 14-10-2018 IPR036192 Cell division protein ZapA-like superfamily YP_3893 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 78 98 8.3E-13 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YP_3893 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 61 78 8.3E-13 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YP_3893 b35aa6e9977e10a02a1243efe8e50ad3 98 SUPERFAMILY SSF46689 4 98 5.38E-27 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3893 b35aa6e9977e10a02a1243efe8e50ad3 98 PIRSF PIRSF002097 1 98 8.4E-46 T 14-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 YP_3893 b35aa6e9977e10a02a1243efe8e50ad3 98 Gene3D G3DSA:1.10.10.60 1 98 2.7E-35 T 14-10-2018 YP_3893 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01591 DNA-binding protein FIS signature 42 57 5.1E-34 T 14-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 YP_3893 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01591 DNA-binding protein FIS signature 57 69 5.1E-34 T 14-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 YP_3893 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01591 DNA-binding protein FIS signature 26 42 5.1E-34 T 14-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 YP_3893 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01591 DNA-binding protein FIS signature 9 26 5.1E-34 T 14-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 YP_3893 b35aa6e9977e10a02a1243efe8e50ad3 98 Hamap MF_00166 DNA-binding protein Fis [fis]. 1 98 33.512 T 14-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 YP_3893 b35aa6e9977e10a02a1243efe8e50ad3 98 Pfam PF02954 Bacterial regulatory protein, Fis family 55 95 3.8E-14 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YP_3302 8022e1b6c737580f25e5cdfab7ff0b4d 476 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 26 45 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 YP_3302 8022e1b6c737580f25e5cdfab7ff0b4d 476 SUPERFAMILY SSF53448 17 391 5.42E-77 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_3302 8022e1b6c737580f25e5cdfab7ff0b4d 476 Gene3D G3DSA:2.160.10.10 301 421 3.9E-37 T 14-10-2018 YP_3302 8022e1b6c737580f25e5cdfab7ff0b4d 476 SUPERFAMILY SSF51161 313 408 3.39E-19 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily YP_3302 8022e1b6c737580f25e5cdfab7ff0b4d 476 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 17 430 52.488 T 14-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 YP_3302 8022e1b6c737580f25e5cdfab7ff0b4d 476 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 211 221 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 YP_3302 8022e1b6c737580f25e5cdfab7ff0b4d 476 Gene3D G3DSA:3.90.550.10 1 300 1.3E-93 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_3302 8022e1b6c737580f25e5cdfab7ff0b4d 476 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 21 397 1.5E-154 T 14-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 YP_3302 8022e1b6c737580f25e5cdfab7ff0b4d 476 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 113 121 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 YP_3302 8022e1b6c737580f25e5cdfab7ff0b4d 476 Pfam PF00483 Nucleotidyl transferase 22 291 1.4E-65 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 YP_0182 be3d38673b37e688a9848e892785cb30 255 SMART SM00382 26 215 1.3E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0182 be3d38673b37e688a9848e892785cb30 255 Pfam PF00005 ABC transporter 17 156 9.1E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0182 be3d38673b37e688a9848e892785cb30 255 SUPERFAMILY SSF52540 1 213 1.0E-65 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0182 be3d38673b37e688a9848e892785cb30 255 Gene3D G3DSA:3.40.50.300 1 241 2.4E-60 T 14-10-2018 YP_0182 be3d38673b37e688a9848e892785cb30 255 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0652 0441bc00b4aa8b8f50fe85d001d4c5d0 154 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 35 131 5.8E-32 T 14-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 YP_0652 0441bc00b4aa8b8f50fe85d001d4c5d0 154 Gene3D G3DSA:3.30.160.100 35 141 3.3E-36 T 14-10-2018 IPR036567 Ribosome hibernation promotion factor-like YP_0652 0441bc00b4aa8b8f50fe85d001d4c5d0 154 SUPERFAMILY SSF69754 37 140 4.05E-31 T 14-10-2018 IPR036567 Ribosome hibernation promotion factor-like YP_0652 0441bc00b4aa8b8f50fe85d001d4c5d0 154 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 37 125 2.4E-20 T 14-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 YP_2361 0789cde518951291b84620b07bb779e3 914 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 150 160 - T 14-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2361 0789cde518951291b84620b07bb779e3 914 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 78 2.7E-11 T 14-10-2018 YP_2361 0789cde518951291b84620b07bb779e3 914 SMART SM00929 88 128 1.9E-19 T 14-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2361 0789cde518951291b84620b07bb779e3 914 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 103 115 - T 14-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2361 0789cde518951291b84620b07bb779e3 914 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 221 274 6.5E-10 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2361 0789cde518951291b84620b07bb779e3 914 Gene3D G3DSA:2.20.25.90 221 274 1.1E-12 T 14-10-2018 YP_2361 0789cde518951291b84620b07bb779e3 914 SMART SM00926 221 275 1.9E-9 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2361 0789cde518951291b84620b07bb779e3 914 SUPERFAMILY SSF54862 81 213 5.44E-34 T 14-10-2018 YP_2361 0789cde518951291b84620b07bb779e3 914 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 124 1.1E-14 T 14-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2361 0789cde518951291b84620b07bb779e3 914 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 14-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2361 0789cde518951291b84620b07bb779e3 914 Pfam PF01568 Molydopterin dinucleotide binding domain 830 896 1.1E-7 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 YP_2361 0789cde518951291b84620b07bb779e3 914 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 661 1.1E-201 T 14-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2361 0789cde518951291b84620b07bb779e3 914 Gene3D G3DSA:3.40.50.740 510 679 1.7E-10 T 14-10-2018 YP_2361 0789cde518951291b84620b07bb779e3 914 SUPERFAMILY SSF53706 219 693 2.2E-78 T 14-10-2018 YP_2361 0789cde518951291b84620b07bb779e3 914 Gene3D G3DSA:3.10.20.740 1 127 3.4E-28 T 14-10-2018 YP_2361 0789cde518951291b84620b07bb779e3 914 SUPERFAMILY SSF50692 821 896 7.46E-14 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily YP_2361 0789cde518951291b84620b07bb779e3 914 Gene3D G3DSA:2.40.40.20 812 908 9.7E-10 T 14-10-2018 YP_2361 0789cde518951291b84620b07bb779e3 914 Pfam PF00384 Molybdopterin oxidoreductase 554 637 1.3E-6 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2361 0789cde518951291b84620b07bb779e3 914 SUPERFAMILY SSF54292 1 77 9.86E-19 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YP_3625 fe46aa74b1be92432285782c6bf33bd4 418 SMART SM00842 10 196 1.3E-96 T 14-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 YP_3625 fe46aa74b1be92432285782c6bf33bd4 418 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 385 1.1E-161 T 14-10-2018 IPR020823 Cell division protein FtsA YP_3625 fe46aa74b1be92432285782c6bf33bd4 418 Gene3D G3DSA:3.30.420.40 13 379 1.9E-115 T 14-10-2018 YP_3625 fe46aa74b1be92432285782c6bf33bd4 418 Gene3D G3DSA:3.90.640.10 235 300 1.9E-115 T 14-10-2018 YP_3625 fe46aa74b1be92432285782c6bf33bd4 418 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 3.5E-30 T 14-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 YP_3625 fe46aa74b1be92432285782c6bf33bd4 418 Gene3D G3DSA:3.30.420.40 197 359 1.9E-115 T 14-10-2018 YP_3625 fe46aa74b1be92432285782c6bf33bd4 418 Gene3D G3DSA:3.30.1490.110 87 169 1.9E-115 T 14-10-2018 YP_3625 fe46aa74b1be92432285782c6bf33bd4 418 PIRSF PIRSF003101 1 418 1.1E-153 T 14-10-2018 IPR020823 Cell division protein FtsA YP_3625 fe46aa74b1be92432285782c6bf33bd4 418 SUPERFAMILY SSF53067 198 384 2.13E-47 T 14-10-2018 YP_3625 fe46aa74b1be92432285782c6bf33bd4 418 SUPERFAMILY SSF53067 8 221 7.12E-62 T 14-10-2018 YP_3625 fe46aa74b1be92432285782c6bf33bd4 418 Pfam PF14450 Cell division protein FtsA 207 381 1.2E-24 T 14-10-2018 YP_3625 fe46aa74b1be92432285782c6bf33bd4 418 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 418 29.689 T 14-10-2018 IPR020823 Cell division protein FtsA YP_3742 c97da4300908759edf1628a0d5848f1e 241 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 4 237 51.985 T 14-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 YP_3742 c97da4300908759edf1628a0d5848f1e 241 Pfam PF01048 Phosphorylase superfamily 17 221 2.7E-41 T 14-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 YP_3742 c97da4300908759edf1628a0d5848f1e 241 SUPERFAMILY SSF53167 5 236 1.44E-93 T 14-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 YP_3742 c97da4300908759edf1628a0d5848f1e 241 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 7 236 2.9E-124 T 14-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 YP_3742 c97da4300908759edf1628a0d5848f1e 241 Gene3D G3DSA:3.40.50.1580 2 240 1.2E-76 T 14-10-2018 YP_3742 c97da4300908759edf1628a0d5848f1e 241 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 64 79 - T 14-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_2583 34f41faef72eff22013f27c569ad5abe 370 Gene3D G3DSA:1.10.530.10 104 358 2.5E-116 T 14-10-2018 YP_2583 34f41faef72eff22013f27c569ad5abe 370 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 67 358 7.1E-121 T 14-10-2018 IPR011757 Lytic transglycosylase MltB YP_2583 34f41faef72eff22013f27c569ad5abe 370 SUPERFAMILY SSF53955 61 357 2.49E-94 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_2583 34f41faef72eff22013f27c569ad5abe 370 Gene3D G3DSA:1.10.8.350 66 238 2.5E-116 T 14-10-2018 YP_2583 34f41faef72eff22013f27c569ad5abe 370 Pfam PF13406 Transglycosylase SLT domain 61 355 1.1E-92 T 14-10-2018 IPR031304 Transglycosylase SLT domain 2 YP_1848 e598aa7110f4ddc9563f1065273ad8c5 230 Gene3D G3DSA:1.10.10.10 124 230 1.9E-30 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1848 e598aa7110f4ddc9563f1065273ad8c5 230 Pfam PF00072 Response regulator receiver domain 4 112 1.3E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1848 e598aa7110f4ddc9563f1065273ad8c5 230 SUPERFAMILY SSF46894 124 222 1.81E-28 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_1848 e598aa7110f4ddc9563f1065273ad8c5 230 SMART SM00862 146 221 3.5E-24 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_1848 e598aa7110f4ddc9563f1065273ad8c5 230 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 221 6.6E-90 T 14-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 YP_1848 e598aa7110f4ddc9563f1065273ad8c5 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 6.8E-24 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_1848 e598aa7110f4ddc9563f1065273ad8c5 230 SMART SM00448 1 111 1.2E-39 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1848 e598aa7110f4ddc9563f1065273ad8c5 230 SUPERFAMILY SSF52172 1 119 3.56E-37 T 14-10-2018 IPR011006 CheY-like superfamily YP_1848 e598aa7110f4ddc9563f1065273ad8c5 230 Gene3D G3DSA:3.40.50.2300 1 121 8.2E-37 T 14-10-2018 YP_3931 6dff0a6468813e0b7bfe294218a7f63b 402 Pfam PF00872 Transposase, Mutator family 12 377 2.2E-114 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_3931 6dff0a6468813e0b7bfe294218a7f63b 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_0383 51e1cfae2e3836cfe0d40858eb240311 188 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 122 183 7.5E-14 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0383 51e1cfae2e3836cfe0d40858eb240311 188 SUPERFAMILY SSF56784 5 185 6.8E-44 T 14-10-2018 IPR036412 HAD-like superfamily YP_0383 51e1cfae2e3836cfe0d40858eb240311 188 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 5 185 9.2E-59 T 14-10-2018 IPR010976 Beta-phosphoglucomutase hydrolase YP_0383 51e1cfae2e3836cfe0d40858eb240311 188 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 183 7.0E-30 T 14-10-2018 YP_0383 51e1cfae2e3836cfe0d40858eb240311 188 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 147 167 7.7E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0383 51e1cfae2e3836cfe0d40858eb240311 188 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 129 145 7.7E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0383 51e1cfae2e3836cfe0d40858eb240311 188 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 7.7E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0383 51e1cfae2e3836cfe0d40858eb240311 188 Gene3D G3DSA:3.40.50.1000 7 185 5.8E-46 T 14-10-2018 IPR023214 HAD superfamily YP_0383 51e1cfae2e3836cfe0d40858eb240311 188 Gene3D G3DSA:1.10.150.240 18 89 5.8E-46 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YP_3498 75fa4d46304fb42bbcd2dc46e391aa23 100 SUPERFAMILY SSF69786 6 99 1.96E-32 T 14-10-2018 IPR036591 YggU-like superfamily YP_3498 75fa4d46304fb42bbcd2dc46e391aa23 100 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 14 85 1.2E-25 T 14-10-2018 IPR003746 Protein of unknown function DUF167 YP_3498 75fa4d46304fb42bbcd2dc46e391aa23 100 Gene3D G3DSA:3.30.1200.10 2 100 4.7E-36 T 14-10-2018 IPR036591 YggU-like superfamily YP_3498 75fa4d46304fb42bbcd2dc46e391aa23 100 Hamap MF_00634 UPF0235 protein YggU [yggU]. 11 99 20.444 T 14-10-2018 IPR003746 Protein of unknown function DUF167 YP_3498 75fa4d46304fb42bbcd2dc46e391aa23 100 SMART SM01152 11 87 2.3E-38 T 14-10-2018 IPR003746 Protein of unknown function DUF167 YP_3498 75fa4d46304fb42bbcd2dc46e391aa23 100 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 11 95 2.2E-30 T 14-10-2018 IPR005228 Conserved hypothetical protein CHP00251 YP_2513 a1d6216eefb9d84b1930a4e1448cdf44 252 Gene3D G3DSA:3.40.50.150 18 248 3.4E-59 T 14-10-2018 YP_2513 a1d6216eefb9d84b1930a4e1448cdf44 252 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 123 135 3.3E-5 T 14-10-2018 YP_2513 a1d6216eefb9d84b1930a4e1448cdf44 252 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 153 177 3.3E-5 T 14-10-2018 YP_2513 a1d6216eefb9d84b1930a4e1448cdf44 252 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 55 69 3.3E-5 T 14-10-2018 YP_2513 a1d6216eefb9d84b1930a4e1448cdf44 252 Pfam PF05175 Methyltransferase small domain 48 183 4.4E-15 T 14-10-2018 IPR007848 Methyltransferase small domain GO:0008168 YP_2513 a1d6216eefb9d84b1930a4e1448cdf44 252 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 126 132 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YP_2513 a1d6216eefb9d84b1930a4e1448cdf44 252 Hamap MF_01872 tRNA1(Val) (adenine(37)-N6)-methyltransferase [yfiC]. 18 252 56.536 T 14-10-2018 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase GO:0016430 YP_2513 a1d6216eefb9d84b1930a4e1448cdf44 252 SUPERFAMILY SSF53335 19 206 5.08E-33 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_2180 132dbb1082d8bf76375d258694d78fa7 470 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 469 2.5E-185 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_2180 132dbb1082d8bf76375d258694d78fa7 470 Gene3D G3DSA:3.40.1380.20 336 467 2.7E-44 T 14-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_2180 132dbb1082d8bf76375d258694d78fa7 470 Gene3D G3DSA:2.40.33.10 71 167 1.4E-145 T 14-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_2180 132dbb1082d8bf76375d258694d78fa7 470 SUPERFAMILY SSF50800 70 167 3.14E-29 T 14-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily YP_2180 132dbb1082d8bf76375d258694d78fa7 470 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 14-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_2180 132dbb1082d8bf76375d258694d78fa7 470 SUPERFAMILY SSF51621 1 338 3.0E-100 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YP_2180 132dbb1082d8bf76375d258694d78fa7 470 PRINTS PR01050 Pyruvate kinase family signature 186 200 7.2E-78 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_2180 132dbb1082d8bf76375d258694d78fa7 470 PRINTS PR01050 Pyruvate kinase family signature 313 329 7.2E-78 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_2180 132dbb1082d8bf76375d258694d78fa7 470 PRINTS PR01050 Pyruvate kinase family signature 294 312 7.2E-78 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_2180 132dbb1082d8bf76375d258694d78fa7 470 PRINTS PR01050 Pyruvate kinase family signature 59 75 7.2E-78 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_2180 132dbb1082d8bf76375d258694d78fa7 470 PRINTS PR01050 Pyruvate kinase family signature 244 268 7.2E-78 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_2180 132dbb1082d8bf76375d258694d78fa7 470 PRINTS PR01050 Pyruvate kinase family signature 217 243 7.2E-78 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_2180 132dbb1082d8bf76375d258694d78fa7 470 PRINTS PR01050 Pyruvate kinase family signature 269 293 7.2E-78 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_2180 132dbb1082d8bf76375d258694d78fa7 470 SUPERFAMILY SSF52935 323 469 9.68E-34 T 14-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_2180 132dbb1082d8bf76375d258694d78fa7 470 Gene3D G3DSA:3.20.20.60 4 332 1.4E-145 T 14-10-2018 YP_2180 132dbb1082d8bf76375d258694d78fa7 470 Pfam PF00224 Pyruvate kinase, barrel domain 1 341 2.9E-152 T 14-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_2180 132dbb1082d8bf76375d258694d78fa7 470 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 2.2E-27 T 14-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 ProSitePatterns PS00755 Protein secY signature 1. 76 95 - T 14-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 Hamap MF_01465 Protein translocase subunit SecY [secY]. 10 433 29.984 T 14-10-2018 IPR026593 Protein translocase subunit SecY YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 Pfam PF00344 SecY translocase 76 417 1.3E-119 T 14-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 180 203 1.3E-98 T 14-10-2018 YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 370 388 1.3E-98 T 14-10-2018 YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 315 337 1.3E-98 T 14-10-2018 YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 402 420 1.3E-98 T 14-10-2018 YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 154 179 1.3E-98 T 14-10-2018 YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 75 95 1.3E-98 T 14-10-2018 YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 116 139 1.3E-98 T 14-10-2018 YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 23 41 1.3E-98 T 14-10-2018 YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 272 291 1.3E-98 T 14-10-2018 YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PIRSF PIRSF004557 11 441 1.6E-123 T 14-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 Gene3D G3DSA:1.10.3370.10 13 429 1.9E-164 T 14-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 ProSitePatterns PS00756 Protein secY signature 2. 173 190 - T 14-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 20 429 2.9E-141 T 14-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YP_0227 c9ddd3ae7a6ecd2a11613e657fea94a3 443 SUPERFAMILY SSF103491 16 424 6.28E-134 T 14-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YP_2752 8840c2182c65ef6328d6ae01c2bedcf4 1494 SMART SM00869 1233 1483 4.5E-34 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_2752 8840c2182c65ef6328d6ae01c2bedcf4 1494 Pfam PF03797 Autotransporter beta-domain 1236 1470 1.8E-36 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_2752 8840c2182c65ef6328d6ae01c2bedcf4 1494 Gene3D G3DSA:2.160.20.20 783 1190 8.8E-30 T 14-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YP_2752 8840c2182c65ef6328d6ae01c2bedcf4 1494 SUPERFAMILY SSF103515 1204 1494 7.45E-44 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_2752 8840c2182c65ef6328d6ae01c2bedcf4 1494 SUPERFAMILY SSF51126 594 1190 9.73E-12 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor YP_2752 8840c2182c65ef6328d6ae01c2bedcf4 1494 Gene3D G3DSA:2.160.20.20 527 776 1.8E-21 T 14-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YP_2752 8840c2182c65ef6328d6ae01c2bedcf4 1494 Gene3D G3DSA:2.40.128.130 1191 1494 1.2E-54 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_2752 8840c2182c65ef6328d6ae01c2bedcf4 1494 Pfam PF03212 Pertactin 1082 1189 5.7E-14 T 14-10-2018 IPR004899 Pertactin, central region YP_2752 8840c2182c65ef6328d6ae01c2bedcf4 1494 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 546 582 7.4E-6 T 14-10-2018 IPR030930 Adhesin of bacterial autotransporter system YP_2752 8840c2182c65ef6328d6ae01c2bedcf4 1494 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 895 922 9.5E-5 T 14-10-2018 IPR030930 Adhesin of bacterial autotransporter system YP_2752 8840c2182c65ef6328d6ae01c2bedcf4 1494 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 1095 1494 2.8E-100 T 14-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YP_1794 3a01c344a29071867ea5f0d70044dca8 295 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 14-10-2018 IPR000540 Flagellar motor protein MotA, conserved site YP_1794 3a01c344a29071867ea5f0d70044dca8 295 Pfam PF01618 MotA/TolQ/ExbB proton channel family 139 239 2.9E-11 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel YP_1794 3a01c344a29071867ea5f0d70044dca8 295 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 2 281 5.3E-119 T 14-10-2018 IPR022522 Flagellar motor stator, MotA YP_3864 1cea28f43d3fc7204aeb7eeb9e697dd6 776 Pfam PF03538 Salmonella virulence plasmid 28.1kDa A protein 16 206 3.5E-13 T 14-10-2018 IPR018003 Insecticidal toxin complex/plasmid virulence protein YP_2022 b98a7320123d0cbd989c531f2837260f 253 SUPERFAMILY SSF48317 11 237 3.14E-32 T 14-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YP_2022 b98a7320123d0cbd989c531f2837260f 253 Pfam PF01569 PAP2 superfamily 80 228 5.0E-28 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YP_2022 b98a7320123d0cbd989c531f2837260f 253 SMART SM00014 77 227 6.3E-36 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YP_2022 b98a7320123d0cbd989c531f2837260f 253 Gene3D G3DSA:1.20.144.10 2 253 2.0E-77 T 14-10-2018 YP_0158 8dc7725f88ffd128a56a8d93cc74f9bd 243 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 94 203 3.6E-10 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0158 8dc7725f88ffd128a56a8d93cc74f9bd 243 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 18 29 3.6E-11 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0158 8dc7725f88ffd128a56a8d93cc74f9bd 243 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 148 164 3.6E-11 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0158 8dc7725f88ffd128a56a8d93cc74f9bd 243 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 166 186 3.6E-11 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0158 8dc7725f88ffd128a56a8d93cc74f9bd 243 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 117 130 3.6E-11 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0158 8dc7725f88ffd128a56a8d93cc74f9bd 243 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 119 198 2.6E-10 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0158 8dc7725f88ffd128a56a8d93cc74f9bd 243 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 21 232 4.1E-81 T 14-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 YP_0158 8dc7725f88ffd128a56a8d93cc74f9bd 243 Gene3D G3DSA:3.40.50.1000 21 226 2.1E-65 T 14-10-2018 IPR023214 HAD superfamily YP_0158 8dc7725f88ffd128a56a8d93cc74f9bd 243 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 18 234 37.842 T 14-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 YP_0158 8dc7725f88ffd128a56a8d93cc74f9bd 243 Gene3D G3DSA:1.10.150.240 33 103 2.1E-65 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YP_0158 8dc7725f88ffd128a56a8d93cc74f9bd 243 Pfam PF13419 Haloacid dehalogenase-like hydrolase 22 203 1.8E-36 T 14-10-2018 YP_0158 8dc7725f88ffd128a56a8d93cc74f9bd 243 SUPERFAMILY SSF56784 9 233 3.95E-61 T 14-10-2018 IPR036412 HAD-like superfamily YP_1013 7d59da2769cdb89eceaec6c7f8092ff1 359 Gene3D G3DSA:2.40.50.100 289 350 6.0E-15 T 14-10-2018 YP_1013 7d59da2769cdb89eceaec6c7f8092ff1 359 SMART SM00382 23 206 1.2E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1013 7d59da2769cdb89eceaec6c7f8092ff1 359 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 2 350 2.8E-152 T 14-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 YP_1013 7d59da2769cdb89eceaec6c7f8092ff1 359 SUPERFAMILY SSF52540 7 221 3.72E-59 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1013 7d59da2769cdb89eceaec6c7f8092ff1 359 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1013 7d59da2769cdb89eceaec6c7f8092ff1 359 Pfam PF03459 TOBE domain 290 349 7.8E-17 T 14-10-2018 IPR005116 Transport-associated OB, type 1 YP_1013 7d59da2769cdb89eceaec6c7f8092ff1 359 SUPERFAMILY SSF50331 235 350 1.04E-23 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YP_1013 7d59da2769cdb89eceaec6c7f8092ff1 359 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 290 349 6.3E-17 T 14-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 YP_1013 7d59da2769cdb89eceaec6c7f8092ff1 359 Gene3D G3DSA:3.40.50.300 10 229 2.9E-54 T 14-10-2018 YP_1013 7d59da2769cdb89eceaec6c7f8092ff1 359 Pfam PF00005 ABC transporter 17 156 2.1E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0278 f870cfcd61ba4759584b0837339cb8cf 291 Pfam PF00484 Carbonic anhydrase 109 258 3.5E-49 T 14-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 YP_0278 f870cfcd61ba4759584b0837339cb8cf 291 Gene3D G3DSA:3.40.1050.10 70 290 2.4E-85 T 14-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 YP_0278 f870cfcd61ba4759584b0837339cb8cf 291 SUPERFAMILY SSF53056 55 283 2.22E-75 T 14-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 YP_0278 f870cfcd61ba4759584b0837339cb8cf 291 SMART SM00947 101 263 4.1E-65 T 14-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 YP_0278 f870cfcd61ba4759584b0837339cb8cf 291 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 153 173 - T 14-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 YP_0278 f870cfcd61ba4759584b0837339cb8cf 291 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 113 120 - T 14-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 YP_0819 05dbf3556760569d72901631177a03f8 427 SUPERFAMILY SSF51905 13 294 2.76E-20 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0819 05dbf3556760569d72901631177a03f8 427 Pfam PF13450 NAD(P)-binding Rossmann-like domain 15 79 1.4E-7 T 14-10-2018 YP_0819 05dbf3556760569d72901631177a03f8 427 Gene3D G3DSA:3.50.50.60 5 427 2.0E-95 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3951 13523077d0064888f3f3842ffc6958a8 867 Gene3D G3DSA:3.40.50.300 555 766 4.5E-61 T 14-10-2018 YP_3951 13523077d0064888f3f3842ffc6958a8 867 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 13 853 0.0 T 14-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 YP_3951 13523077d0064888f3f3842ffc6958a8 867 SUPERFAMILY SSF52540 552 834 3.23E-59 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3951 13523077d0064888f3f3842ffc6958a8 867 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 637 655 - T 14-10-2018 IPR028299 ClpA/B, conserved site 2 YP_3951 13523077d0064888f3f3842ffc6958a8 867 SMART SM00382 603 751 2.5E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3951 13523077d0064888f3f3842ffc6958a8 867 SMART SM00382 217 362 1.2E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3951 13523077d0064888f3f3842ffc6958a8 867 Gene3D G3DSA:1.10.8.60 769 865 1.4E-6 T 14-10-2018 YP_3951 13523077d0064888f3f3842ffc6958a8 867 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 769 842 1.9E-8 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_3951 13523077d0064888f3f3842ffc6958a8 867 Pfam PF07724 AAA domain (Cdc48 subfamily) 602 763 1.6E-37 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_3951 13523077d0064888f3f3842ffc6958a8 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 681 699 3.2E-29 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3951 13523077d0064888f3f3842ffc6958a8 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 652 670 3.2E-29 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3951 13523077d0064888f3f3842ffc6958a8 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 714 728 3.2E-29 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3951 13523077d0064888f3f3842ffc6958a8 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 607 625 3.2E-29 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3951 13523077d0064888f3f3842ffc6958a8 867 SUPERFAMILY SSF81923 12 126 1.02E-9 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YP_3951 13523077d0064888f3f3842ffc6958a8 867 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 313 325 - T 14-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 YP_3951 13523077d0064888f3f3842ffc6958a8 867 SUPERFAMILY SSF52540 180 551 5.89E-68 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3951 13523077d0064888f3f3842ffc6958a8 867 Gene3D G3DSA:3.40.50.300 363 550 5.3E-43 T 14-10-2018 YP_3951 13523077d0064888f3f3842ffc6958a8 867 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 222 334 5.2E-8 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_3951 13523077d0064888f3f3842ffc6958a8 867 Gene3D G3DSA:3.40.50.300 171 361 6.9E-60 T 14-10-2018 YP_3951 13523077d0064888f3f3842ffc6958a8 867 Gene3D G3DSA:1.10.1780.10 5 160 5.4E-34 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YP_3951 13523077d0064888f3f3842ffc6958a8 867 SMART SM01086 769 859 2.4E-4 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_0322 6852c57472e5ea00abd8583fc8b9f5a4 505 Pfam PF00009 Elongation factor Tu GTP binding domain 56 257 5.5E-44 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0322 6852c57472e5ea00abd8583fc8b9f5a4 505 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 113 128 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site YP_0322 6852c57472e5ea00abd8583fc8b9f5a4 505 Gene3D G3DSA:2.40.30.10 271 359 1.4E-24 T 14-10-2018 YP_0322 6852c57472e5ea00abd8583fc8b9f5a4 505 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 58 464 1.3E-202 T 14-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 YP_0322 6852c57472e5ea00abd8583fc8b9f5a4 505 Gene3D G3DSA:2.40.30.10 362 464 5.7E-28 T 14-10-2018 YP_0322 6852c57472e5ea00abd8583fc8b9f5a4 505 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 64 244 4.5E-16 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YP_0322 6852c57472e5ea00abd8583fc8b9f5a4 505 SUPERFAMILY SSF50447 273 358 1.1E-22 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YP_0322 6852c57472e5ea00abd8583fc8b9f5a4 505 SUPERFAMILY SSF50465 365 465 3.55E-28 T 14-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YP_0322 6852c57472e5ea00abd8583fc8b9f5a4 505 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 49 505 52.985 T 14-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 YP_0322 6852c57472e5ea00abd8583fc8b9f5a4 505 SUPERFAMILY SSF52540 51 265 3.89E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0322 6852c57472e5ea00abd8583fc8b9f5a4 505 PRINTS PR00315 GTP-binding elongation factor signature 59 72 1.1E-13 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0322 6852c57472e5ea00abd8583fc8b9f5a4 505 PRINTS PR00315 GTP-binding elongation factor signature 140 150 1.1E-13 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0322 6852c57472e5ea00abd8583fc8b9f5a4 505 PRINTS PR00315 GTP-binding elongation factor signature 120 128 1.1E-13 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0322 6852c57472e5ea00abd8583fc8b9f5a4 505 PRINTS PR00315 GTP-binding elongation factor signature 156 167 1.1E-13 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0322 6852c57472e5ea00abd8583fc8b9f5a4 505 PRINTS PR00315 GTP-binding elongation factor signature 193 202 1.1E-13 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0322 6852c57472e5ea00abd8583fc8b9f5a4 505 Gene3D G3DSA:3.40.50.300 37 270 2.9E-71 T 14-10-2018 YP_0058 0ce8d7b70371fcc88bf74c1af540b958 358 Gene3D G3DSA:3.40.50.2000 168 352 2.9E-66 T 14-10-2018 YP_0058 0ce8d7b70371fcc88bf74c1af540b958 358 Gene3D G3DSA:3.40.50.2000 5 155 1.2E-59 T 14-10-2018 YP_0058 0ce8d7b70371fcc88bf74c1af540b958 358 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 73 328 1.0E-80 T 14-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 YP_0058 0ce8d7b70371fcc88bf74c1af540b958 358 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 6 345 5.5E-162 T 14-10-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 YP_0058 0ce8d7b70371fcc88bf74c1af540b958 358 SUPERFAMILY SSF53756 5 349 2.09E-100 T 14-10-2018 YP_2336 a5a28a09bcf7beb86a496eedcf1ae600 285 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 15 284 55.644 T 14-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 YP_2336 a5a28a09bcf7beb86a496eedcf1ae600 285 Pfam PF00378 Enoyl-CoA hydratase/isomerase 31 279 8.6E-80 T 14-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 YP_2336 a5a28a09bcf7beb86a496eedcf1ae600 285 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 123 143 - T 14-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 YP_2336 a5a28a09bcf7beb86a496eedcf1ae600 285 SUPERFAMILY SSF52096 19 280 9.68E-79 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YP_2336 a5a28a09bcf7beb86a496eedcf1ae600 285 TIGRFAM TIGR01929 menB: naphthoate synthase 22 281 4.2E-151 T 14-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 YP_2336 a5a28a09bcf7beb86a496eedcf1ae600 285 Gene3D G3DSA:3.90.226.10 1 222 3.2E-86 T 14-10-2018 YP_2336 a5a28a09bcf7beb86a496eedcf1ae600 285 Gene3D G3DSA:1.10.12.10 223 273 2.4E-31 T 14-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal YP_0309 a8086cd4f4824af07e2ec76f949ecd81 545 Hamap MF_01227 CTP synthase [pyrG]. 3 540 51.207 T 14-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 YP_0309 a8086cd4f4824af07e2ec76f949ecd81 545 Pfam PF00117 Glutamine amidotransferase class-I 301 535 9.0E-63 T 14-10-2018 IPR017926 Glutamine amidotransferase YP_0309 a8086cd4f4824af07e2ec76f949ecd81 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 7.5E-264 T 14-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 YP_0309 a8086cd4f4824af07e2ec76f949ecd81 545 Pfam PF06418 CTP synthase N-terminus 5 266 7.9E-126 T 14-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 YP_0309 a8086cd4f4824af07e2ec76f949ecd81 545 SUPERFAMILY SSF52317 289 541 2.37E-88 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_0309 a8086cd4f4824af07e2ec76f949ecd81 545 Gene3D G3DSA:3.40.50.300 1 285 8.0E-136 T 14-10-2018 YP_0309 a8086cd4f4824af07e2ec76f949ecd81 545 SUPERFAMILY SSF52540 3 269 4.91E-122 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0309 a8086cd4f4824af07e2ec76f949ecd81 545 Gene3D G3DSA:3.40.50.880 287 545 1.4E-106 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 SUPERFAMILY SSF55785 260 367 7.23E-14 T 14-10-2018 IPR035965 PAS domain superfamily YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 SMART SM00388 373 439 8.3E-13 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 Gene3D G3DSA:3.30.450.20 237 360 2.7E-17 T 14-10-2018 YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 PRINTS PR00344 Bacterial sensor protein C-terminal signature 537 547 4.1E-17 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 PRINTS PR00344 Bacterial sensor protein C-terminal signature 572 585 4.1E-17 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 PRINTS PR00344 Bacterial sensor protein C-terminal signature 548 566 4.1E-17 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 PRINTS PR00344 Bacterial sensor protein C-terminal signature 519 533 4.1E-17 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 Pfam PF00989 PAS fold 252 355 4.7E-9 T 14-10-2018 IPR013767 PAS fold GO:0006355 YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 SMART SM00091 248 314 3.0E-7 T 14-10-2018 IPR000014 PAS domain YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 Gene3D G3DSA:1.10.287.130 361 437 3.5E-18 T 14-10-2018 YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 586 5.0E-22 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 SUPERFAMILY SSF47384 359 436 8.83E-13 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 Pfam PF17203 Single cache domain 3 77 122 4.3E-7 T 14-10-2018 IPR033463 Single cache domain 3 YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 Pfam PF00512 His Kinase A (phospho-acceptor) domain 375 435 3.5E-11 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 Gene3D G3DSA:3.30.565.10 440 594 8.9E-46 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 SMART SM00387 481 588 1.0E-33 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 SUPERFAMILY SSF55874 430 589 7.33E-40 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 247 364 8.5E-12 T 14-10-2018 IPR000014 PAS domain YP_0984 635c9e18a056689b788a8ca5491ec0cc 607 SUPERFAMILY SSF103190 40 162 7.85E-12 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily YP_0033 34a21efc0bb9e640dad97ca4229c7537 266 Gene3D G3DSA:3.40.630.30 1 104 3.8E-19 T 14-10-2018 YP_0033 34a21efc0bb9e640dad97ca4229c7537 266 Gene3D G3DSA:3.10.129.10 106 258 5.0E-46 T 14-10-2018 YP_0033 34a21efc0bb9e640dad97ca4229c7537 266 SUPERFAMILY SSF55729 6 115 4.05E-19 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_0033 34a21efc0bb9e640dad97ca4229c7537 266 Pfam PF00583 Acetyltransferase (GNAT) family 6 81 1.3E-12 T 14-10-2018 IPR000182 GNAT domain YP_0033 34a21efc0bb9e640dad97ca4229c7537 266 SUPERFAMILY SSF54637 114 256 2.39E-43 T 14-10-2018 IPR029069 HotDog domain superfamily YP_0033 34a21efc0bb9e640dad97ca4229c7537 266 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 117 256 1.7E-50 T 14-10-2018 IPR012660 Thioesterase, putative YP_0033 34a21efc0bb9e640dad97ca4229c7537 266 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 124 257 2.2E-49 T 14-10-2018 IPR012660 Thioesterase, putative YP_1731 59c96ed54f68a2d0c5f2b64266702dc0 293 Hamap MF_00188 Protease HtpX [htpX]. 1 289 25.994 T 14-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 YP_1731 59c96ed54f68a2d0c5f2b64266702dc0 293 Gene3D G3DSA:3.30.2010.10 64 157 3.9E-36 T 14-10-2018 YP_1731 59c96ed54f68a2d0c5f2b64266702dc0 293 Pfam PF01435 Peptidase family M48 74 288 5.7E-38 T 14-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 YP_3132 b00f288991552a5971333049b6c74594 243 Gene3D G3DSA:3.40.30.10 171 242 3.0E-25 T 14-10-2018 YP_3132 b00f288991552a5971333049b6c74594 243 TIGRFAM TIGR02190 GlrX-dom: glutaredoxin-family domain 164 241 9.5E-40 T 14-10-2018 IPR011906 Glutaredoxin domain KEGG: 00480+1.11.1.15 YP_3132 b00f288991552a5971333049b6c74594 243 Pfam PF08534 Redoxin 5 160 6.5E-33 T 14-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 YP_3132 b00f288991552a5971333049b6c74594 243 ProSitePatterns PS00195 Glutaredoxin active site. 175 191 - T 14-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 YP_3132 b00f288991552a5971333049b6c74594 243 SUPERFAMILY SSF52833 2 242 2.17E-46 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_3132 b00f288991552a5971333049b6c74594 243 Gene3D G3DSA:3.40.30.10 4 165 3.1E-62 T 14-10-2018 YP_3132 b00f288991552a5971333049b6c74594 243 Pfam PF00462 Glutaredoxin 173 231 1.1E-19 T 14-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 YP_3132 b00f288991552a5971333049b6c74594 243 PRINTS PR00160 Glutaredoxin signature 173 191 3.8E-15 T 14-10-2018 IPR014025 Glutaredoxin subgroup YP_3132 b00f288991552a5971333049b6c74594 243 PRINTS PR00160 Glutaredoxin signature 228 241 3.8E-15 T 14-10-2018 IPR014025 Glutaredoxin subgroup YP_3132 b00f288991552a5971333049b6c74594 243 PRINTS PR00160 Glutaredoxin signature 214 227 3.8E-15 T 14-10-2018 IPR014025 Glutaredoxin subgroup YP_0724 96d1351cefcf1f1f255bc10e5800b6d8 304 Gene3D G3DSA:3.30.420.40 119 289 1.1E-78 T 14-10-2018 YP_0724 96d1351cefcf1f1f255bc10e5800b6d8 304 ProSitePatterns PS01125 ROK family signature. 130 157 - T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YP_0724 96d1351cefcf1f1f255bc10e5800b6d8 304 SUPERFAMILY SSF53067 2 300 2.91E-60 T 14-10-2018 YP_0724 96d1351cefcf1f1f255bc10e5800b6d8 304 Pfam PF00480 ROK family 3 300 3.0E-84 T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YP_0724 96d1351cefcf1f1f255bc10e5800b6d8 304 Gene3D G3DSA:3.30.420.40 4 296 1.1E-78 T 14-10-2018 YP_0695 321effeb70ac2ef095bea19c68c8f102 285 TIGRFAM TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit 28 276 6.6E-102 T 14-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 YP_0695 321effeb70ac2ef095bea19c68c8f102 285 PIRSF PIRSF009437 21 283 1.1E-101 T 14-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 YP_0695 321effeb70ac2ef095bea19c68c8f102 285 Pfam PF04205 FMN-binding domain 170 265 9.1E-17 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 YP_0695 321effeb70ac2ef095bea19c68c8f102 285 SMART SM00900 170 268 1.4E-36 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 YP_0695 321effeb70ac2ef095bea19c68c8f102 285 Hamap MF_00427 Na(+)-translocating NADH-quinone reductase subunit C [nqrC]. 29 280 36.735 T 14-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 YP_3899 eba49d9569ad284edd4223b64088e784 296 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 9 22 - T 14-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 YP_3899 eba49d9569ad284edd4223b64088e784 296 SUPERFAMILY SSF48179 170 291 4.76E-29 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_3899 eba49d9569ad284edd4223b64088e784 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 6 167 9.6E-38 T 14-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 YP_3899 eba49d9569ad284edd4223b64088e784 296 Gene3D G3DSA:3.40.50.720 1 171 1.8E-43 T 14-10-2018 YP_3899 eba49d9569ad284edd4223b64088e784 296 SUPERFAMILY SSF51735 5 168 1.18E-35 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3899 eba49d9569ad284edd4223b64088e784 296 PIRSF PIRSF000103 1 296 9.4E-63 T 14-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 YP_3899 eba49d9569ad284edd4223b64088e784 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 170 291 6.2E-38 T 14-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 YP_3899 eba49d9569ad284edd4223b64088e784 296 Gene3D G3DSA:1.10.1040.10 172 294 7.9E-32 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YP_0210 80a4a136f9f763c7081cd668dd447c61 274 Gene3D G3DSA:2.30.30.30 115 195 1.8E-33 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 YP_0210 80a4a136f9f763c7081cd668dd447c61 274 Gene3D G3DSA:4.10.950.10 196 273 5.2E-37 T 14-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0210 80a4a136f9f763c7081cd668dd447c61 274 SUPERFAMILY SSF50249 2 125 1.1E-50 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_0210 80a4a136f9f763c7081cd668dd447c61 274 SMART SM01382 124 251 1.3E-89 T 14-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 YP_0210 80a4a136f9f763c7081cd668dd447c61 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 3.9E-34 T 14-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0210 80a4a136f9f763c7081cd668dd447c61 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 47.315 T 14-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 YP_0210 80a4a136f9f763c7081cd668dd447c61 274 Gene3D G3DSA:2.40.50.140 1 114 4.6E-51 T 14-10-2018 YP_0210 80a4a136f9f763c7081cd668dd447c61 274 SUPERFAMILY SSF50104 127 269 1.14E-59 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily YP_0210 80a4a136f9f763c7081cd668dd447c61 274 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 14-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0210 80a4a136f9f763c7081cd668dd447c61 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 249 1.8E-55 T 14-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 YP_0210 80a4a136f9f763c7081cd668dd447c61 274 PIRSF PIRSF002158 12 274 1.8E-100 T 14-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0210 80a4a136f9f763c7081cd668dd447c61 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 8.0E-132 T 14-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 YP_0210 80a4a136f9f763c7081cd668dd447c61 274 SMART SM01383 42 118 3.6E-48 T 14-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 PRINTS PR00344 Bacterial sensor protein C-terminal signature 647 661 1.3E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 PRINTS PR00344 Bacterial sensor protein C-terminal signature 665 675 1.3E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 PRINTS PR00344 Bacterial sensor protein C-terminal signature 678 696 1.3E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 PRINTS PR00344 Bacterial sensor protein C-terminal signature 702 715 1.3E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 Pfam PF00672 HAMP domain 323 362 2.4E-7 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 SMART SM00388 497 559 1.1E-7 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 Gene3D G3DSA:1.10.8.500 321 365 5.6E-11 T 14-10-2018 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 SUPERFAMILY SSF158472 321 363 1.44E-7 T 14-10-2018 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 Pfam PF12860 PAS fold 386 486 1.5E-9 T 14-10-2018 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 SUPERFAMILY SSF47384 492 557 2.55E-7 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 Pfam PF00072 Response regulator receiver domain 740 848 1.9E-11 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 Pfam PF00512 His Kinase A (phospho-acceptor) domain 498 558 6.5E-7 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 Gene3D G3DSA:1.10.287.130 489 558 4.6E-17 T 14-10-2018 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 SMART SM00448 738 848 4.9E-15 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 Gene3D G3DSA:3.40.50.2300 736 851 2.1E-19 T 14-10-2018 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 SUPERFAMILY SSF55785 367 471 3.24E-7 T 14-10-2018 IPR035965 PAS domain superfamily YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 SUPERFAMILY SSF55874 550 718 4.06E-36 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 Gene3D G3DSA:3.30.450.20 366 487 2.6E-9 T 14-10-2018 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 601 716 5.2E-21 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 Gene3D G3DSA:3.30.565.10 561 722 6.0E-40 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 SUPERFAMILY SSF52172 739 851 5.12E-21 T 14-10-2018 IPR011006 CheY-like superfamily YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 SMART SM00304 315 368 5.1E-7 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_3328 ee721b0c768860e60f69e806b4b86f3f 851 SMART SM00387 600 718 2.7E-27 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0663 a384938b7c56d3ed275f31e424c2f0d0 511 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 14 497 4.3E-208 T 14-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 YP_0663 a384938b7c56d3ed275f31e424c2f0d0 511 Pfam PF07690 Major Facilitator Superfamily 18 412 5.4E-55 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_0663 a384938b7c56d3ed275f31e424c2f0d0 511 PRINTS PR01036 Tetracycline resistance protein TetB signature 204 222 6.9E-5 T 14-10-2018 YP_0663 a384938b7c56d3ed275f31e424c2f0d0 511 PRINTS PR01036 Tetracycline resistance protein TetB signature 138 162 6.9E-5 T 14-10-2018 YP_0663 a384938b7c56d3ed275f31e424c2f0d0 511 PRINTS PR01036 Tetracycline resistance protein TetB signature 108 128 6.9E-5 T 14-10-2018 YP_0663 a384938b7c56d3ed275f31e424c2f0d0 511 PRINTS PR01036 Tetracycline resistance protein TetB signature 17 41 6.9E-5 T 14-10-2018 YP_0663 a384938b7c56d3ed275f31e424c2f0d0 511 SUPERFAMILY SSF103473 10 499 2.49E-72 T 14-10-2018 IPR036259 MFS transporter superfamily YP_0663 a384938b7c56d3ed275f31e424c2f0d0 511 Gene3D G3DSA:1.20.1720.10 14 219 2.4E-47 T 14-10-2018 YP_0643 7ad71a1f2c030b9dfec2d874630aa917 503 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 350 357 - T 14-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 YP_0643 7ad71a1f2c030b9dfec2d874630aa917 503 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 2.0E-33 T 14-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 YP_0643 7ad71a1f2c030b9dfec2d874630aa917 503 SUPERFAMILY SSF53187 179 496 4.71E-125 T 14-10-2018 YP_0643 7ad71a1f2c030b9dfec2d874630aa917 503 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 498 41.266 T 14-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 YP_0643 7ad71a1f2c030b9dfec2d874630aa917 503 Gene3D G3DSA:3.40.220.10 1 159 3.3E-59 T 14-10-2018 YP_0643 7ad71a1f2c030b9dfec2d874630aa917 503 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 186 489 9.2E-123 T 14-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 YP_0643 7ad71a1f2c030b9dfec2d874630aa917 503 PRINTS PR00481 Cytosol aminopeptidase signature 324 345 3.3E-54 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YP_0643 7ad71a1f2c030b9dfec2d874630aa917 503 PRINTS PR00481 Cytosol aminopeptidase signature 374 389 3.3E-54 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YP_0643 7ad71a1f2c030b9dfec2d874630aa917 503 PRINTS PR00481 Cytosol aminopeptidase signature 346 366 3.3E-54 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YP_0643 7ad71a1f2c030b9dfec2d874630aa917 503 PRINTS PR00481 Cytosol aminopeptidase signature 287 308 3.3E-54 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YP_0643 7ad71a1f2c030b9dfec2d874630aa917 503 PRINTS PR00481 Cytosol aminopeptidase signature 265 282 3.3E-54 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YP_0643 7ad71a1f2c030b9dfec2d874630aa917 503 SUPERFAMILY SSF52949 1 184 4.06E-52 T 14-10-2018 YP_0643 7ad71a1f2c030b9dfec2d874630aa917 503 Gene3D G3DSA:3.40.630.10 181 498 1.2E-141 T 14-10-2018 YP_1127 b9c94ec1cc1fd5925342d23198921e53 631 Pfam PF00005 ABC transporter 397 546 4.6E-34 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1127 b9c94ec1cc1fd5925342d23198921e53 631 ProSitePatterns PS00211 ABC transporters family signature. 518 532 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1127 b9c94ec1cc1fd5925342d23198921e53 631 Gene3D G3DSA:3.40.50.300 371 629 4.1E-97 T 14-10-2018 YP_1127 b9c94ec1cc1fd5925342d23198921e53 631 SMART SM00382 406 592 7.1E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1127 b9c94ec1cc1fd5925342d23198921e53 631 Pfam PF00664 ABC transporter transmembrane region 61 335 6.3E-36 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YP_1127 b9c94ec1cc1fd5925342d23198921e53 631 SUPERFAMILY SSF52540 370 617 5.13E-94 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1127 b9c94ec1cc1fd5925342d23198921e53 631 SUPERFAMILY SSF90123 40 359 4.32E-58 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_1127 b9c94ec1cc1fd5925342d23198921e53 631 Gene3D G3DSA:1.20.1560.10 48 370 5.9E-112 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_2072 25c8a327f2b27dcea5dfbf051d0a830e 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 264 4.2E-24 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2072 25c8a327f2b27dcea5dfbf051d0a830e 273 SUPERFAMILY SSF161098 71 259 1.7E-35 T 14-10-2018 IPR035906 MetI-like superfamily YP_2072 25c8a327f2b27dcea5dfbf051d0a830e 273 Gene3D G3DSA:1.10.3720.10 71 266 5.8E-30 T 14-10-2018 IPR035906 MetI-like superfamily YP_1103 fe8662f250eb1608aed2279da2305642 860 Gene3D G3DSA:3.40.50.620 33 566 0.0 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_1103 fe8662f250eb1608aed2279da2305642 860 SUPERFAMILY SSF52374 5 668 8.56E-140 T 14-10-2018 YP_1103 fe8662f250eb1608aed2279da2305642 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 417 571 5.1E-6 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1103 fe8662f250eb1608aed2279da2305642 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 618 652 2.6E-7 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1103 fe8662f250eb1608aed2279da2305642 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 15 171 1.3E-25 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1103 fe8662f250eb1608aed2279da2305642 860 Pfam PF08264 Anticodon-binding domain of tRNA 701 822 5.7E-16 T 14-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 YP_1103 fe8662f250eb1608aed2279da2305642 860 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 859 0.0 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YP_1103 fe8662f250eb1608aed2279da2305642 860 Gene3D G3DSA:1.10.730.10 8 791 0.0 T 14-10-2018 YP_1103 fe8662f250eb1608aed2279da2305642 860 Gene3D G3DSA:3.10.20.590 799 860 2.9E-25 T 14-10-2018 YP_1103 fe8662f250eb1608aed2279da2305642 860 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1103 fe8662f250eb1608aed2279da2305642 860 Gene3D G3DSA:3.10.330.110 567 628 0.0 T 14-10-2018 YP_1103 fe8662f250eb1608aed2279da2305642 860 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 859 23.378 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YP_1103 fe8662f250eb1608aed2279da2305642 860 SUPERFAMILY SSF47323 662 859 1.64E-37 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1103 fe8662f250eb1608aed2279da2305642 860 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 403 4.5E-78 T 14-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 YP_1103 fe8662f250eb1608aed2279da2305642 860 SUPERFAMILY SSF50677 226 415 5.55E-57 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 YP_1103 fe8662f250eb1608aed2279da2305642 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 1.2E-51 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YP_1103 fe8662f250eb1608aed2279da2305642 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 1.2E-51 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YP_1103 fe8662f250eb1608aed2279da2305642 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 557 567 1.2E-51 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YP_1103 fe8662f250eb1608aed2279da2305642 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 1.2E-51 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YP_1103 fe8662f250eb1608aed2279da2305642 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 1.2E-51 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YP_1103 fe8662f250eb1608aed2279da2305642 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 524 546 1.2E-51 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YP_1103 fe8662f250eb1608aed2279da2305642 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 1.2E-51 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YP_1103 fe8662f250eb1608aed2279da2305642 860 Gene3D G3DSA:3.90.740.10 227 414 0.0 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 YP_1674 785e30952aa6161cbae9d3816f6d3303 425 ProSitePatterns PS00217 Sugar transport proteins signature 2. 126 151 - T 14-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 YP_1674 785e30952aa6161cbae9d3816f6d3303 425 Gene3D G3DSA:1.20.1250.20 27 425 8.5E-77 T 14-10-2018 YP_1674 785e30952aa6161cbae9d3816f6d3303 425 Pfam PF07690 Major Facilitator Superfamily 39 322 1.5E-36 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_1674 785e30952aa6161cbae9d3816f6d3303 425 SUPERFAMILY SSF103473 27 425 5.49E-78 T 14-10-2018 IPR036259 MFS transporter superfamily YP_pMT052 6bd38e34ba87a1aaccfc71a9d1ecb3a8 361 Gene3D G3DSA:3.60.21.10 6 247 4.4E-21 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like YP_pMT052 6bd38e34ba87a1aaccfc71a9d1ecb3a8 361 Pfam PF00149 Calcineurin-like phosphoesterase 5 204 2.6E-8 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 YP_pMT052 6bd38e34ba87a1aaccfc71a9d1ecb3a8 361 SUPERFAMILY SSF56300 7 270 8.65E-29 T 14-10-2018 YP_2536 11f056778b0a11a2c34e570409e8990d 1296 SMART SM01211 1040 1295 1.6E-155 T 14-10-2018 YP_2536 11f056778b0a11a2c34e570409e8990d 1296 SUPERFAMILY SSF109736 154 219 2.22E-21 T 14-10-2018 YP_2536 11f056778b0a11a2c34e570409e8990d 1296 SUPERFAMILY SSF55326 220 427 1.15E-63 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YP_2536 11f056778b0a11a2c34e570409e8990d 1296 SUPERFAMILY SSF56042 822 1033 2.84E-54 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YP_2536 11f056778b0a11a2c34e570409e8990d 1296 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1296 21.387 T 14-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YP_2536 11f056778b0a11a2c34e570409e8990d 1296 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 3 1294 0.0 T 14-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YP_2536 11f056778b0a11a2c34e570409e8990d 1296 SUPERFAMILY SSF56042 430 614 1.09E-52 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YP_2536 11f056778b0a11a2c34e570409e8990d 1296 Gene3D G3DSA:1.10.8.750 152 212 1.3E-28 T 14-10-2018 YP_2536 11f056778b0a11a2c34e570409e8990d 1296 SUPERFAMILY SSF82697 1 151 1.26E-52 T 14-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YP_2536 11f056778b0a11a2c34e570409e8990d 1296 Gene3D G3DSA:3.90.650.10 419 605 1.8E-57 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YP_2536 11f056778b0a11a2c34e570409e8990d 1296 Pfam PF02769 AIR synthase related protein, C-terminal domain 835 966 4.8E-13 T 14-10-2018 IPR010918 PurM-like, C-terminal domain YP_2536 11f056778b0a11a2c34e570409e8990d 1296 Pfam PF02769 AIR synthase related protein, C-terminal domain 431 584 6.0E-26 T 14-10-2018 IPR010918 PurM-like, C-terminal domain YP_2536 11f056778b0a11a2c34e570409e8990d 1296 Gene3D G3DSA:3.30.1330.10 614 807 4.9E-24 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YP_2536 11f056778b0a11a2c34e570409e8990d 1296 SUPERFAMILY SSF55326 618 815 3.66E-66 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YP_2536 11f056778b0a11a2c34e570409e8990d 1296 Gene3D G3DSA:3.30.1330.10 213 418 7.7E-43 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YP_2536 11f056778b0a11a2c34e570409e8990d 1296 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1040 1293 7.6E-103 T 14-10-2018 YP_2536 11f056778b0a11a2c34e570409e8990d 1296 Gene3D G3DSA:3.90.650.10 808 981 5.0E-27 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YP_2536 11f056778b0a11a2c34e570409e8990d 1296 Gene3D G3DSA:3.40.50.880 982 1296 2.6E-139 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_2536 11f056778b0a11a2c34e570409e8990d 1296 SUPERFAMILY SSF52317 1036 1294 7.92E-97 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_3488 75c9142cdd4d6e618471779118f3b852 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 27.386 T 14-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 YP_3488 75c9142cdd4d6e618471779118f3b852 90 Gene3D G3DSA:1.10.3880.10 1 90 1.6E-36 T 14-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 YP_3488 75c9142cdd4d6e618471779118f3b852 90 SUPERFAMILY SSF111148 1 89 4.45E-39 T 14-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 YP_3488 75c9142cdd4d6e618471779118f3b852 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 76 6.0E-39 T 14-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 YP_3488 75c9142cdd4d6e618471779118f3b852 90 PIRSF PIRSF029827 1 90 7.1E-43 T 14-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 YP_3488 75c9142cdd4d6e618471779118f3b852 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 5.4E-39 T 14-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 YP_2883 26786ed08f35f21778d9097710dd292c 1241 Gene3D G3DSA:1.10.3170.10 177 370 4.7E-163 T 14-10-2018 YP_2883 26786ed08f35f21778d9097710dd292c 1241 SUPERFAMILY SSF52980 924 1216 1.45E-89 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 YP_2883 26786ed08f35f21778d9097710dd292c 1241 Gene3D G3DSA:3.40.50.300 30 457 4.7E-163 T 14-10-2018 YP_2883 26786ed08f35f21778d9097710dd292c 1241 Gene3D G3DSA:1.10.486.10 604 749 9.2E-173 T 14-10-2018 YP_2883 26786ed08f35f21778d9097710dd292c 1241 Gene3D G3DSA:3.40.50.300 466 867 9.2E-173 T 14-10-2018 YP_2883 26786ed08f35f21778d9097710dd292c 1241 Gene3D G3DSA:3.90.320.10 913 1221 1.7E-111 T 14-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal YP_2883 26786ed08f35f21778d9097710dd292c 1241 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 28 1215 23.095 T 14-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 YP_2883 26786ed08f35f21778d9097710dd292c 1241 Pfam PF13361 UvrD-like helicase C-terminal domain 538 829 4.8E-17 T 14-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 YP_2883 26786ed08f35f21778d9097710dd292c 1241 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 30 1214 0.0 T 14-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 YP_2883 26786ed08f35f21778d9097710dd292c 1241 SUPERFAMILY SSF52540 28 840 5.32E-107 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2883 26786ed08f35f21778d9097710dd292c 1241 Pfam PF00580 UvrD/REP helicase N-terminal domain 27 457 2.4E-59 T 14-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 YP_1391 2e0a2e0d4e57fe3ae73b5369e6015e9e 280 Gene3D G3DSA:3.40.50.1820 5 279 6.2E-92 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1391 2e0a2e0d4e57fe3ae73b5369e6015e9e 280 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 6 278 4.2E-119 T 14-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 YP_1391 2e0a2e0d4e57fe3ae73b5369e6015e9e 280 Pfam PF00756 Putative esterase 26 261 8.2E-69 T 14-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 YP_1391 2e0a2e0d4e57fe3ae73b5369e6015e9e 280 SUPERFAMILY SSF53474 5 278 1.26E-87 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 SMART SM00341 531 610 3.1E-26 T 14-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 SUPERFAMILY SSF52540 208 456 5.69E-64 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 Gene3D G3DSA:1.10.150.80 524 610 1.2E-30 T 14-10-2018 YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 Gene3D G3DSA:3.40.50.300 209 340 4.7E-44 T 14-10-2018 YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 Gene3D G3DSA:1.10.10.10 341 523 2.5E-51 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 Gene3D G3DSA:3.40.50.300 2 208 2.2E-86 T 14-10-2018 YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 SUPERFAMILY SSF52540 14 201 1.27E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 Pfam PF09382 RQC domain 406 517 2.8E-37 T 14-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 Pfam PF00271 Helicase conserved C-terminal domain 228 330 1.1E-19 T 14-10-2018 IPR001650 Helicase, C-terminal YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 Pfam PF00570 HRDC domain 535 601 1.4E-23 T 14-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 Pfam PF00270 DEAD/DEAH box helicase 28 185 5.1E-21 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 14 603 9.4E-266 T 14-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 15 464 2.5E-200 T 14-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 SUPERFAMILY SSF47819 532 608 2.18E-26 T 14-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 Pfam PF16124 RecQ zinc-binding 343 404 3.9E-16 T 14-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 SMART SM00487 22 218 2.7E-32 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 SMART SM00956 411 514 1.2E-51 T 14-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 YP_3215 d0f22b545b5e8527c9ac9432c36f9f28 610 SMART SM00490 250 331 5.9E-28 T 14-10-2018 IPR001650 Helicase, C-terminal YP_3534 33f4a373fbca137962e87ff6cbce570c 388 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 18 380 7.1E-89 T 14-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 YP_3534 33f4a373fbca137962e87ff6cbce570c 388 SUPERFAMILY SSF51556 53 354 7.85E-91 T 14-10-2018 IPR032466 Metal-dependent hydrolase YP_3534 33f4a373fbca137962e87ff6cbce570c 388 Gene3D G3DSA:2.30.40.10 11 381 6.5E-121 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YP_3534 33f4a373fbca137962e87ff6cbce570c 388 SUPERFAMILY SSF51338 8 386 1.26E-12 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YP_3534 33f4a373fbca137962e87ff6cbce570c 388 Pfam PF01979 Amidohydrolase family 49 382 1.0E-21 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 YP_3534 33f4a373fbca137962e87ff6cbce570c 388 Gene3D G3DSA:3.20.20.140 53 354 6.5E-121 T 14-10-2018 YP_3534 33f4a373fbca137962e87ff6cbce570c 388 PIRSF PIRSF038994 1 387 8.2E-133 T 14-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 YP_3858 573b1987a36233f8dfc9e856541151d2 311 Gene3D G3DSA:2.40.50.100 47 111 2.4E-11 T 14-10-2018 YP_3858 573b1987a36233f8dfc9e856541151d2 311 Pfam PF13437 HlyD family secretion protein 156 240 2.6E-9 T 14-10-2018 YP_3858 573b1987a36233f8dfc9e856541151d2 311 Gene3D G3DSA:2.40.30.170 171 295 3.9E-21 T 14-10-2018 YP_3858 573b1987a36233f8dfc9e856541151d2 311 Pfam PF13533 Biotin-lipoyl like 47 95 8.7E-19 T 14-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YP_3858 573b1987a36233f8dfc9e856541151d2 311 Hamap MF_01544 p-hydroxybenzoic acid efflux pump subunit AaeA [aaeA]. 1 311 56.376 T 14-10-2018 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA YP_3858 573b1987a36233f8dfc9e856541151d2 311 SUPERFAMILY SSF111369 46 231 1.07E-21 T 14-10-2018 YP_3858 573b1987a36233f8dfc9e856541151d2 311 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 270 5.4E-31 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YP_2173 90362defb78a9eafd61b12087e2f7016 341 Gene3D G3DSA:3.40.50.2300 69 323 1.8E-101 T 14-10-2018 YP_2173 90362defb78a9eafd61b12087e2f7016 341 Gene3D G3DSA:3.40.50.2300 162 324 1.8E-101 T 14-10-2018 YP_2173 90362defb78a9eafd61b12087e2f7016 341 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 14-10-2018 YP_2173 90362defb78a9eafd61b12087e2f7016 341 Gene3D G3DSA:1.10.260.40 3 59 4.2E-25 T 14-10-2018 YP_2173 90362defb78a9eafd61b12087e2f7016 341 SUPERFAMILY SSF47413 1 59 2.25E-16 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_2173 90362defb78a9eafd61b12087e2f7016 341 SMART SM00354 1 71 2.0E-36 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2173 90362defb78a9eafd61b12087e2f7016 341 Pfam PF13377 Periplasmic binding protein-like domain 171 331 9.5E-42 T 14-10-2018 YP_2173 90362defb78a9eafd61b12087e2f7016 341 Hamap MF_01277 HTH-type transcriptional repressor PurR [purR]. 1 335 63.616 T 14-10-2018 IPR023588 Transcription regulator HTH, PurR GO:0006355 YP_2173 90362defb78a9eafd61b12087e2f7016 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 5.6E-6 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2173 90362defb78a9eafd61b12087e2f7016 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 5.6E-6 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2173 90362defb78a9eafd61b12087e2f7016 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.8E-18 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2173 90362defb78a9eafd61b12087e2f7016 341 SUPERFAMILY SSF53822 60 340 1.02E-95 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_2607 c3d6ba3b656c7cfb32b3640b588fb179 409 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 1 409 36.055 T 14-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 YP_2607 c3d6ba3b656c7cfb32b3640b588fb179 409 Pfam PF01566 Natural resistance-associated macrophage protein 38 382 2.2E-121 T 14-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 YP_2607 c3d6ba3b656c7cfb32b3640b588fb179 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 299 318 7.8E-30 T 14-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 YP_2607 c3d6ba3b656c7cfb32b3640b588fb179 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 125 144 7.8E-30 T 14-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 YP_2607 c3d6ba3b656c7cfb32b3640b588fb179 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 97 123 7.8E-30 T 14-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 YP_2607 c3d6ba3b656c7cfb32b3640b588fb179 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 150 171 7.8E-30 T 14-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 YP_2607 c3d6ba3b656c7cfb32b3640b588fb179 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 200 223 7.8E-30 T 14-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 YP_2607 c3d6ba3b656c7cfb32b3640b588fb179 409 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 20 377 4.3E-97 T 14-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 YP_1661 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 21 143 4.8E-41 T 14-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YP_1661 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 SUPERFAMILY SSF49584 137 237 8.11E-14 T 14-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_1661 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 97 114 - T 14-10-2018 IPR018046 Pili assembly chaperone, conserved site YP_1661 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 SUPERFAMILY SSF49354 17 143 2.12E-38 T 14-10-2018 IPR008962 PapD-like superfamily YP_1661 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 170 236 1.8E-14 T 14-10-2018 IPR016148 Pili assembly chaperone, C-terminal YP_1661 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 Gene3D G3DSA:2.60.40.10 148 245 1.2E-15 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_1661 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 Gene3D G3DSA:2.60.40.10 22 144 1.8E-40 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_1661 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 PRINTS PR00969 Pili chaperone signature 21 30 3.7E-28 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1661 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 PRINTS PR00969 Pili chaperone signature 70 91 3.7E-28 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1661 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 PRINTS PR00969 Pili chaperone signature 98 115 3.7E-28 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1661 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 PRINTS PR00969 Pili chaperone signature 164 179 3.7E-28 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1661 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 PRINTS PR00969 Pili chaperone signature 125 140 3.7E-28 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_2695 2761fd9e4e4e965c33e5a06e7bd10d87 219 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 14 219 3.7E-89 T 14-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 YP_2695 2761fd9e4e4e965c33e5a06e7bd10d87 219 Gene3D G3DSA:3.40.50.2020 12 219 7.2E-72 T 14-10-2018 YP_2695 2761fd9e4e4e965c33e5a06e7bd10d87 219 Pfam PF14681 Uracil phosphoribosyltransferase 18 218 6.6E-64 T 14-10-2018 YP_2695 2761fd9e4e4e965c33e5a06e7bd10d87 219 SUPERFAMILY SSF53271 15 217 9.05E-66 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like YP_2695 2761fd9e4e4e965c33e5a06e7bd10d87 219 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 13 219 43.831 T 14-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 YP_2804 884eb179a33cfe769963dc2d44f6206a 185 Gene3D G3DSA:1.10.132.20 1 34 1.2E-7 T 14-10-2018 YP_2804 884eb179a33cfe769963dc2d44f6206a 185 Pfam PF01765 Ribosome recycling factor 20 183 2.9E-62 T 14-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 YP_2804 884eb179a33cfe769963dc2d44f6206a 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 185 2.5E-79 T 14-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 YP_2804 884eb179a33cfe769963dc2d44f6206a 185 SUPERFAMILY SSF55194 2 184 4.19E-70 T 14-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 YP_2804 884eb179a33cfe769963dc2d44f6206a 185 Gene3D G3DSA:3.30.1360.40 35 100 6.0E-30 T 14-10-2018 YP_2804 884eb179a33cfe769963dc2d44f6206a 185 Gene3D G3DSA:1.10.132.20 101 185 6.0E-28 T 14-10-2018 YP_2804 884eb179a33cfe769963dc2d44f6206a 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.659 T 14-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 SUPERFAMILY SSF55781 510 658 5.15E-8 T 14-10-2018 YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 SUPERFAMILY SSF55874 721 888 7.33E-40 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 Gene3D G3DSA:3.30.565.10 735 895 1.6E-33 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 Gene3D G3DSA:1.20.120.620 397 503 2.2E-39 T 14-10-2018 IPR038318 KdpD, transmembrane domain superfamily YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 777 886 4.1E-21 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 846 864 2.7E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 831 841 2.7E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 813 827 2.7E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 870 883 2.7E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 Gene3D G3DSA:3.40.50.300 20 230 5.1E-102 T 14-10-2018 YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 SUPERFAMILY SSF47384 660 733 2.55E-14 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 SUPERFAMILY SSF52402 254 361 2.09E-6 T 14-10-2018 YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 23 231 1.1E-98 T 14-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 Pfam PF13492 GAF domain 530 646 9.7E-12 T 14-10-2018 IPR003018 GAF domain GO:0005515 YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 SMART SM00387 776 886 6.1E-30 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 Pfam PF13493 Domain of unknown function (DUF4118) 404 508 2.0E-30 T 14-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 SMART SM00388 665 732 7.3E-14 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 Gene3D G3DSA:1.10.287.130 655 734 6.2E-14 T 14-10-2018 YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 Gene3D G3DSA:3.30.450.40 512 654 2.5E-36 T 14-10-2018 IPR029016 GAF-like domain superfamily YP_2492 886859ec9bbf6c9efba12ddada57ea02 908 Pfam PF00512 His Kinase A (phospho-acceptor) domain 666 732 2.2E-11 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_2350 38d21c5fb127fe91a9593a32c08f4bd8 289 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 180 208 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YP_2350 38d21c5fb127fe91a9593a32c08f4bd8 289 Pfam PF00106 short chain dehydrogenase 46 238 2.2E-63 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2350 38d21c5fb127fe91a9593a32c08f4bd8 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 249 269 3.7E-40 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2350 38d21c5fb127fe91a9593a32c08f4bd8 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 46 63 3.7E-40 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2350 38d21c5fb127fe91a9593a32c08f4bd8 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 193 212 3.7E-40 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2350 38d21c5fb127fe91a9593a32c08f4bd8 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 183 3.7E-40 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2350 38d21c5fb127fe91a9593a32c08f4bd8 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 131 3.7E-40 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2350 38d21c5fb127fe91a9593a32c08f4bd8 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 231 3.7E-40 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2350 38d21c5fb127fe91a9593a32c08f4bd8 289 Gene3D G3DSA:3.40.50.720 32 288 3.3E-79 T 14-10-2018 YP_2350 38d21c5fb127fe91a9593a32c08f4bd8 289 SUPERFAMILY SSF51735 43 287 4.27E-80 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2350 38d21c5fb127fe91a9593a32c08f4bd8 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 193 212 1.2E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2350 38d21c5fb127fe91a9593a32c08f4bd8 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 120 131 1.2E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2350 38d21c5fb127fe91a9593a32c08f4bd8 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 173 181 1.2E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_pCD40 9746dee23c09857b5866ed0be90603b8 307 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 232 301 1.3E-16 T 14-10-2018 IPR001543 Surface presentation of antigen (SpoA) YP_pCD40 9746dee23c09857b5866ed0be90603b8 307 SUPERFAMILY SSF101801 229 301 7.46E-18 T 14-10-2018 IPR036429 SpoA-like superfamily YP_pCD40 9746dee23c09857b5866ed0be90603b8 307 TIGRFAM TIGR02551 SpaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family 39 301 7.5E-65 T 14-10-2018 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO GO:0030254 YP_pCD40 9746dee23c09857b5866ed0be90603b8 307 Gene3D G3DSA:2.30.330.10 218 307 1.3E-34 T 14-10-2018 IPR036429 SpoA-like superfamily YP_pCD40 9746dee23c09857b5866ed0be90603b8 307 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 278 295 1.2E-14 T 14-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 YP_pCD40 9746dee23c09857b5866ed0be90603b8 307 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 173 183 1.2E-14 T 14-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 YP_pCD40 9746dee23c09857b5866ed0be90603b8 307 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 234 246 1.2E-14 T 14-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 YP_pCD40 9746dee23c09857b5866ed0be90603b8 307 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 119 132 1.2E-14 T 14-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 YP_0426 618f9ff72138d3366b3d2d895f17c5da 97 PIRSF PIRSF004669 9 96 3.9E-25 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_0426 618f9ff72138d3366b3d2d895f17c5da 97 TIGRFAM TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family 14 92 6.3E-31 T 14-10-2018 IPR006306 Type III secretion protein HrpO GO:0009306|GO:0016021 YP_0426 618f9ff72138d3366b3d2d895f17c5da 97 Pfam PF01313 Bacterial export proteins, family 3 14 86 5.1E-26 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_0426 618f9ff72138d3366b3d2d895f17c5da 97 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 26 47 4.0E-24 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_0426 618f9ff72138d3366b3d2d895f17c5da 97 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 47 62 4.0E-24 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_0426 618f9ff72138d3366b3d2d895f17c5da 97 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 62 84 4.0E-24 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_1044 824628d2578f7787a8e0db6a45862640 238 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_1044 824628d2578f7787a8e0db6a45862640 238 Gene3D G3DSA:3.10.20.30 1 106 1.5E-34 T 14-10-2018 IPR012675 Beta-grasp domain superfamily YP_1044 824628d2578f7787a8e0db6a45862640 238 SUPERFAMILY SSF46548 107 236 9.59E-40 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YP_1044 824628d2578f7787a8e0db6a45862640 238 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 5 111 5.1E-32 T 14-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_1044 824628d2578f7787a8e0db6a45862640 238 SUPERFAMILY SSF54292 1 106 4.18E-31 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YP_1044 824628d2578f7787a8e0db6a45862640 238 Pfam PF13534 4Fe-4S dicluster domain 148 221 4.4E-10 T 14-10-2018 YP_1044 824628d2578f7787a8e0db6a45862640 238 Gene3D G3DSA:1.10.1060.10 107 238 4.1E-59 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YP_1044 824628d2578f7787a8e0db6a45862640 238 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 230 1.1E-90 T 14-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_3496 0fc4026f929a69f65950e036bb3b50d8 380 SUPERFAMILY SSF102114 9 380 1.83E-107 T 14-10-2018 YP_3496 0fc4026f929a69f65950e036bb3b50d8 380 Pfam PF06969 HemN C-terminal domain 310 368 4.9E-8 T 14-10-2018 IPR010723 HemN, C-terminal YP_3496 0fc4026f929a69f65950e036bb3b50d8 380 Pfam PF04055 Radical SAM superfamily 15 183 1.5E-17 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YP_3496 0fc4026f929a69f65950e036bb3b50d8 380 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 11 372 1.9E-139 T 14-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 YP_3496 0fc4026f929a69f65950e036bb3b50d8 380 SMART SM00729 10 227 3.6E-49 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 YP_3496 0fc4026f929a69f65950e036bb3b50d8 380 Gene3D G3DSA:3.80.30.20 2 295 1.3E-98 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe YP_2782 a7b14e7c46d302569ed8a19fd616963f 242 Gene3D G3DSA:2.40.50.540 153 242 1.1E-30 T 14-10-2018 IPR038139 NlpE, C-terminal domain superfamily YP_2782 a7b14e7c46d302569ed8a19fd616963f 242 Gene3D G3DSA:2.40.128.300 34 126 2.3E-29 T 14-10-2018 YP_2782 a7b14e7c46d302569ed8a19fd616963f 242 Pfam PF17185 NlpE C-terminal OB domain 152 240 8.2E-37 T 14-10-2018 IPR033450 NlpE, C-terminal OB domain YP_2782 a7b14e7c46d302569ed8a19fd616963f 242 Pfam PF04170 NlpE N-terminal domain 53 137 7.6E-26 T 14-10-2018 IPR007298 Copper resistance lipoprotein NlpE YP_0951 b0172aeb295f3e8744d0ca6cdd8c4fea 295 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 33 284 2.5E-77 T 14-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 YP_0951 b0172aeb295f3e8744d0ca6cdd8c4fea 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 283 1.5E-7 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_0951 b0172aeb295f3e8744d0ca6cdd8c4fea 295 SUPERFAMILY SSF161098 86 276 7.85E-27 T 14-10-2018 IPR035906 MetI-like superfamily YP_0951 b0172aeb295f3e8744d0ca6cdd8c4fea 295 Gene3D G3DSA:1.10.3720.10 82 284 3.4E-23 T 14-10-2018 IPR035906 MetI-like superfamily YP_0765 74551218fb637163cb9b5703efd00a34 204 Pfam PF00510 Cytochrome c oxidase subunit III 16 202 2.0E-14 T 14-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0765 74551218fb637163cb9b5703efd00a34 204 SUPERFAMILY SSF81452 21 202 7.19E-58 T 14-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0765 74551218fb637163cb9b5703efd00a34 204 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 25 204 2.3E-86 T 14-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 YP_0765 74551218fb637163cb9b5703efd00a34 204 Gene3D G3DSA:1.20.120.80 19 204 8.0E-60 T 14-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0523 8c0f4d594663a93bff63acf56c95fd88 411 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 225 236 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_0523 8c0f4d594663a93bff63acf56c95fd88 411 Pfam PF13484 4Fe-4S double cluster binding domain 224 288 9.2E-19 T 14-10-2018 YP_0523 8c0f4d594663a93bff63acf56c95fd88 411 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 7 347 51.146 T 14-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 YP_0523 8c0f4d594663a93bff63acf56c95fd88 411 SUPERFAMILY SSF46548 171 288 5.02E-20 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YP_0523 8c0f4d594663a93bff63acf56c95fd88 411 Pfam PF08331 Domain of unknown function (DUF1730) 62 128 4.8E-21 T 14-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 YP_0523 8c0f4d594663a93bff63acf56c95fd88 411 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 14 380 4.5E-146 T 14-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 1 1168 0.0 T 14-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 Gene3D G3DSA:3.40.920.10 417 624 4.5E-73 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 265 347 1.9E-14 T 14-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 Gene3D G3DSA:3.40.50.970 1 254 1.3E-106 T 14-10-2018 YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 426 608 6.2E-35 T 14-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 Gene3D G3DSA:3.40.50.920 255 416 5.2E-54 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 Gene3D G3DSA:3.30.70.20 669 791 4.1E-38 T 14-10-2018 YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 Pfam PF12838 4Fe-4S dicluster domain 689 757 3.5E-9 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 957 1069 9.2E-9 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 SUPERFAMILY SSF52518 794 1164 8.99E-118 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 689 700 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 745 756 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 Gene3D G3DSA:3.40.50.970 793 1170 2.2E-150 T 14-10-2018 YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 Pfam PF10371 Domain of unknown function 627 678 1.1E-23 T 14-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 SUPERFAMILY SSF52922 255 410 4.14E-42 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 Gene3D G3DSA:4.10.780.10 633 668 4.2E-7 T 14-10-2018 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 13 243 6.6E-81 T 14-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 SMART SM00890 622 679 2.2E-30 T 14-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 SUPERFAMILY SSF52518 2 254 2.35E-73 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 PIRSF PIRSF000159 1 1177 0.0 T 14-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 SUPERFAMILY SSF53323 417 668 2.62E-73 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 YP_2120 19d394ab0fd44a8c0b55b46525e5587e 1177 SUPERFAMILY SSF54862 665 837 5.16E-22 T 14-10-2018 YP_1591 757f3b695096d6a4565490e30b65c023 428 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 410 1.3E-97 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YP_1591 757f3b695096d6a4565490e30b65c023 428 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 14-10-2018 IPR019776 Flagellar basal body rod protein, conserved site YP_1591 757f3b695096d6a4565490e30b65c023 428 Gene3D G3DSA:2.60.98.20 146 310 2.6E-34 T 14-10-2018 IPR037058 Flagellar hook protein FlgE superfamily YP_1591 757f3b695096d6a4565490e30b65c023 428 Pfam PF00460 Flagella basal body rod protein 4 33 4.0E-11 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YP_1591 757f3b695096d6a4565490e30b65c023 428 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 350 427 1.1E-22 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_1591 757f3b695096d6a4565490e30b65c023 428 SUPERFAMILY SSF117143 73 389 1.96E-77 T 14-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YP_1591 757f3b695096d6a4565490e30b65c023 428 Pfam PF07559 Flagellar basal body protein FlaE 174 309 4.3E-18 T 14-10-2018 IPR011491 Flagellar hook protein FlgE YP_1657 f2e5a45957cb26eed9f37736c4780f5d 600 SMART SM00382 370 562 6.0E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1657 f2e5a45957cb26eed9f37736c4780f5d 600 SUPERFAMILY SSF90123 17 331 5.36E-37 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_1657 f2e5a45957cb26eed9f37736c4780f5d 600 SUPERFAMILY SSF52540 339 581 1.51E-85 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1657 f2e5a45957cb26eed9f37736c4780f5d 600 Gene3D G3DSA:1.20.1560.10 4 330 8.6E-28 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_1657 f2e5a45957cb26eed9f37736c4780f5d 600 Gene3D G3DSA:3.40.50.300 332 583 4.4E-87 T 14-10-2018 YP_1657 f2e5a45957cb26eed9f37736c4780f5d 600 Pfam PF00005 ABC transporter 361 510 1.9E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1657 f2e5a45957cb26eed9f37736c4780f5d 600 ProSitePatterns PS00211 ABC transporters family signature. 482 496 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1657 f2e5a45957cb26eed9f37736c4780f5d 600 Pfam PF00664 ABC transporter transmembrane region 34 291 4.1E-7 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YP_0352 1472f2789f9ec4093725c13fd8fe68db 547 Pfam PF05681 Fumarate hydratase (Fumerase) 51 325 3.9E-84 T 14-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 YP_0352 1472f2789f9ec4093725c13fd8fe68db 547 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 75 323 5.4E-31 T 14-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 YP_0352 1472f2789f9ec4093725c13fd8fe68db 547 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 373 537 2.6E-62 T 14-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 YP_0352 1472f2789f9ec4093725c13fd8fe68db 547 PIRSF PIRSF001394 30 547 2.4E-231 T 14-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 YP_0352 1472f2789f9ec4093725c13fd8fe68db 547 Gene3D G3DSA:3.20.130.10 347 537 1.2E-58 T 14-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 YP_0352 1472f2789f9ec4093725c13fd8fe68db 547 ProSitePatterns PS00163 Fumarate lyases signature. 456 465 - T 14-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 YP_0352 1472f2789f9ec4093725c13fd8fe68db 547 Pfam PF05683 Fumarase C-terminus 332 537 5.6E-94 T 14-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 YP_0352 1472f2789f9ec4093725c13fd8fe68db 547 SUPERFAMILY SSF117457 361 536 3.79E-63 T 14-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 YP_1548 4fc72622cf4efc4f4b09acdde9e02159 330 Hamap MF_01045 D-cysteine desulfhydrase [dcyD]. 2 330 63.733 T 14-10-2018 IPR023702 D-cysteine desulphhydrase, bacterial GO:0019148 KEGG: 00270+4.4.1.15 YP_1548 4fc72622cf4efc4f4b09acdde9e02159 330 TIGRFAM TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 13 330 2.9E-126 T 14-10-2018 IPR005966 D-cysteine desulfhydrase GO:0003824 KEGG: 00270+4.4.1.15 YP_1548 4fc72622cf4efc4f4b09acdde9e02159 330 Gene3D G3DSA:3.40.50.1100 19 324 1.1E-121 T 14-10-2018 YP_1548 4fc72622cf4efc4f4b09acdde9e02159 330 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 318 2.3E-51 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YP_1548 4fc72622cf4efc4f4b09acdde9e02159 330 Gene3D G3DSA:3.40.50.1100 51 159 1.1E-121 T 14-10-2018 YP_1548 4fc72622cf4efc4f4b09acdde9e02159 330 PIRSF PIRSF006278 1 330 1.1E-94 T 14-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase YP_1548 4fc72622cf4efc4f4b09acdde9e02159 330 SUPERFAMILY SSF53686 8 328 3.14E-85 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_0532 c408f0cbfe17e226ce1091808c0f509c 334 SUPERFAMILY SSF117892 195 231 9.29E-8 T 14-10-2018 IPR036013 Band 7/SPFH domain superfamily YP_0532 c408f0cbfe17e226ce1091808c0f509c 334 SMART SM00244 18 225 1.1E-42 T 14-10-2018 IPR001107 Band 7 domain YP_0532 c408f0cbfe17e226ce1091808c0f509c 334 PIRSF PIRSF005651 1 334 6.6E-106 T 14-10-2018 IPR010200 HflC GO:0016021|GO:0052547 YP_0532 c408f0cbfe17e226ce1091808c0f509c 334 Pfam PF01145 SPFH domain / Band 7 family 22 241 1.9E-34 T 14-10-2018 IPR001107 Band 7 domain YP_0532 c408f0cbfe17e226ce1091808c0f509c 334 TIGRFAM TIGR01932 hflC: HflC protein 1 325 6.0E-138 T 14-10-2018 IPR010200 HflC GO:0016021|GO:0052547 YP_0532 c408f0cbfe17e226ce1091808c0f509c 334 SUPERFAMILY SSF117892 56 156 1.44E-16 T 14-10-2018 IPR036013 Band 7/SPFH domain superfamily YP_2321 8a7ea53085678d78cdd1fc8883b3d1cc 176 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 164 175 1.0E-35 T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_2321 8a7ea53085678d78cdd1fc8883b3d1cc 176 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 88 111 1.0E-35 T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_2321 8a7ea53085678d78cdd1fc8883b3d1cc 176 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 48 60 1.0E-35 T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_2321 8a7ea53085678d78cdd1fc8883b3d1cc 176 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 137 158 1.0E-35 T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_2321 8a7ea53085678d78cdd1fc8883b3d1cc 176 Gene3D G3DSA:2.40.160.20 27 176 7.9E-48 T 14-10-2018 YP_2321 8a7ea53085678d78cdd1fc8883b3d1cc 176 ProSitePatterns PS00694 Enterobacterial virulence outer membrane protein signature 1. 49 57 - T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_2321 8a7ea53085678d78cdd1fc8883b3d1cc 176 Pfam PF13505 Outer membrane protein beta-barrel domain 11 176 7.6E-23 T 14-10-2018 IPR027385 Outer membrane protein beta-barrel YP_2321 8a7ea53085678d78cdd1fc8883b3d1cc 176 SUPERFAMILY SSF56925 30 176 3.14E-30 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_0720 a1fd742b5e1926411c5d5c764683d068 174 Hamap MF_00109 Shikimate kinase [aroK]. 2 169 25.271 T 14-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YP_0720 a1fd742b5e1926411c5d5c764683d068 174 PRINTS PR01100 Shikimate kinase family signature 29 42 5.7E-22 T 14-10-2018 YP_0720 a1fd742b5e1926411c5d5c764683d068 174 PRINTS PR01100 Shikimate kinase family signature 95 112 5.7E-22 T 14-10-2018 YP_0720 a1fd742b5e1926411c5d5c764683d068 174 PRINTS PR01100 Shikimate kinase family signature 5 20 5.7E-22 T 14-10-2018 YP_0720 a1fd742b5e1926411c5d5c764683d068 174 PRINTS PR01100 Shikimate kinase family signature 57 65 5.7E-22 T 14-10-2018 YP_0720 a1fd742b5e1926411c5d5c764683d068 174 PRINTS PR01100 Shikimate kinase family signature 74 83 5.7E-22 T 14-10-2018 YP_0720 a1fd742b5e1926411c5d5c764683d068 174 Pfam PF01202 Shikimate kinase 11 168 2.1E-47 T 14-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YP_0720 a1fd742b5e1926411c5d5c764683d068 174 ProSitePatterns PS01128 Shikimate kinase signature. 58 82 - T 14-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YP_0720 a1fd742b5e1926411c5d5c764683d068 174 Hamap MF_01269 Shikimate kinase 2 [aroL]. 1 173 44.914 T 14-10-2018 IPR027544 Shikimate kinase 2 GO:0004765|GO:0009073 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YP_0720 a1fd742b5e1926411c5d5c764683d068 174 Gene3D G3DSA:3.40.50.300 1 170 4.2E-52 T 14-10-2018 YP_0720 a1fd742b5e1926411c5d5c764683d068 174 SUPERFAMILY SSF52540 3 169 1.62E-28 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0561 15c00941dae8fa3fcbce1993fe6f1861 118 Gene3D G3DSA:3.10.490.10 1 117 1.0E-40 T 14-10-2018 YP_0561 15c00941dae8fa3fcbce1993fe6f1861 118 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 3 109 3.6E-23 T 14-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like YP_0561 15c00941dae8fa3fcbce1993fe6f1861 118 SUPERFAMILY SSF110857 1 112 1.31E-33 T 14-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily YP_1951 c415adc57ea600dbc9c968e4c92df333 310 Gene3D G3DSA:1.10.10.10 11 99 5.0E-27 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1951 c415adc57ea600dbc9c968e4c92df333 310 Pfam PF03466 LysR substrate binding domain 97 304 3.1E-34 T 14-10-2018 IPR005119 LysR, substrate-binding YP_1951 c415adc57ea600dbc9c968e4c92df333 310 SUPERFAMILY SSF53850 98 307 5.61E-36 T 14-10-2018 YP_1951 c415adc57ea600dbc9c968e4c92df333 310 SUPERFAMILY SSF46785 12 92 1.46E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1951 c415adc57ea600dbc9c968e4c92df333 310 Gene3D G3DSA:3.40.190.10 174 275 6.7E-54 T 14-10-2018 YP_1951 c415adc57ea600dbc9c968e4c92df333 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 72 6.6E-17 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_1951 c415adc57ea600dbc9c968e4c92df333 310 Gene3D G3DSA:3.40.190.10 100 301 6.7E-54 T 14-10-2018 YP_2681 9294d831c1f13b93454f6745bfa532b8 237 SUPERFAMILY SSF56104 2 232 4.58E-75 T 14-10-2018 YP_2681 9294d831c1f13b93454f6745bfa532b8 237 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 14-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YP_2681 9294d831c1f13b93454f6745bfa532b8 237 Gene3D G3DSA:3.30.470.20 85 220 4.5E-90 T 14-10-2018 YP_2681 9294d831c1f13b93454f6745bfa532b8 237 Gene3D G3DSA:3.30.200.20 7 231 4.5E-90 T 14-10-2018 YP_2681 9294d831c1f13b93454f6745bfa532b8 237 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 14-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YP_2681 9294d831c1f13b93454f6745bfa532b8 237 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 3 234 6.6E-79 T 14-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 YP_2681 9294d831c1f13b93454f6745bfa532b8 237 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 28.6 T 14-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YP_2681 9294d831c1f13b93454f6745bfa532b8 237 Pfam PF01259 SAICAR synthetase 7 231 7.1E-58 T 14-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YP_0467 529a47e44590852b3b26886fdad28095 288 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 67 89 - T 14-10-2018 IPR030470 UbiA prenyltransferase conserved site YP_0467 529a47e44590852b3b26886fdad28095 288 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 5 288 30.4 T 14-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 YP_0467 529a47e44590852b3b26886fdad28095 288 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 10 287 2.1E-111 T 14-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 YP_0467 529a47e44590852b3b26886fdad28095 288 Pfam PF01040 UbiA prenyltransferase family 28 270 5.0E-67 T 14-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 YP_0467 529a47e44590852b3b26886fdad28095 288 Gene3D G3DSA:1.10.357.140 23 183 1.9E-41 T 14-10-2018 YP_0110 fa8bbcacffd89fa0b3f943e8d9c55428 342 Pfam PF13377 Periplasmic binding protein-like domain 176 337 9.2E-42 T 14-10-2018 YP_0110 fa8bbcacffd89fa0b3f943e8d9c55428 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 11 55 1.6E-17 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_0110 fa8bbcacffd89fa0b3f943e8d9c55428 342 Gene3D G3DSA:1.10.260.40 1 67 1.1E-23 T 14-10-2018 YP_0110 fa8bbcacffd89fa0b3f943e8d9c55428 342 SUPERFAMILY SSF47413 8 67 9.09E-15 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_0110 fa8bbcacffd89fa0b3f943e8d9c55428 342 Gene3D G3DSA:3.40.50.2300 69 314 5.7E-84 T 14-10-2018 YP_0110 fa8bbcacffd89fa0b3f943e8d9c55428 342 SUPERFAMILY SSF53822 68 340 9.42E-92 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_0110 fa8bbcacffd89fa0b3f943e8d9c55428 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 12 30 - T 14-10-2018 YP_0110 fa8bbcacffd89fa0b3f943e8d9c55428 342 SMART SM00354 9 79 3.7E-27 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_0110 fa8bbcacffd89fa0b3f943e8d9c55428 342 Gene3D G3DSA:3.40.50.2300 168 297 5.7E-84 T 14-10-2018 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 SMART SM00863 653 696 9.0E-21 T 14-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 SUPERFAMILY SSF55681 4 255 1.22E-107 T 14-10-2018 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 Gene3D G3DSA:3.30.980.10 563 697 2.5E-52 T 14-10-2018 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 Pfam PF01411 tRNA synthetases class II (A) 7 553 1.8E-232 T 14-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 SUPERFAMILY SSF55186 552 711 7.98E-53 T 14-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 7 854 0.0 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 SUPERFAMILY SSF101353 256 464 1.44E-60 T 14-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 875 205.725 T 14-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 306 319 2.1E-33 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 236 249 2.1E-33 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 76 87 2.1E-33 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 282 298 2.1E-33 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 209 220 2.1E-33 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 SUPERFAMILY SSF50447 456 552 1.07E-18 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 653 696 4.0E-17 T 14-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 Pfam PF02272 DHHA1 domain 733 871 2.4E-30 T 14-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 Gene3D G3DSA:3.30.930.10 2 252 3.3E-122 T 14-10-2018 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 Gene3D G3DSA:3.30.54.20 624 677 2.5E-52 T 14-10-2018 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 Gene3D G3DSA:2.40.30.130 462 562 8.1E-10 T 14-10-2018 YP_0381 5e3bef8994f712aae5e98fcb5909c64e 875 Gene3D G3DSA:3.10.310.40 764 872 3.9E-36 T 14-10-2018 YP_1400 f286c5b6dcd787918034bf58bae5c456 245 Pfam PF02698 DUF218 domain 48 170 1.1E-17 T 14-10-2018 IPR003848 Domain of unknown function DUF218 YP_1400 f286c5b6dcd787918034bf58bae5c456 245 PIRSF PIRSF005011 1 245 6.7E-150 T 14-10-2018 IPR023604 Uncharacterised protein family SanA YP_0470 24581eb8c2ba7bd79c5837445181b0d7 202 SUPERFAMILY SSF51306 76 198 1.26E-38 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily YP_0470 24581eb8c2ba7bd79c5837445181b0d7 202 Gene3D G3DSA:1.10.10.10 1 70 3.2E-29 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0470 24581eb8c2ba7bd79c5837445181b0d7 202 Gene3D G3DSA:2.10.109.10 80 202 7.9E-47 T 14-10-2018 YP_0470 24581eb8c2ba7bd79c5837445181b0d7 202 SUPERFAMILY SSF46785 3 69 6.36E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0470 24581eb8c2ba7bd79c5837445181b0d7 202 Pfam PF01726 LexA DNA binding domain 1 65 2.5E-29 T 14-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 YP_0470 24581eb8c2ba7bd79c5837445181b0d7 202 Hamap MF_00015 LexA repressor [lexA]. 3 199 32.42 T 14-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 YP_0470 24581eb8c2ba7bd79c5837445181b0d7 202 Pfam PF00717 Peptidase S24-like 114 179 3.4E-15 T 14-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C YP_0470 24581eb8c2ba7bd79c5837445181b0d7 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 150 162 7.4E-14 T 14-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 YP_0470 24581eb8c2ba7bd79c5837445181b0d7 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 122 133 7.4E-14 T 14-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 YP_0470 24581eb8c2ba7bd79c5837445181b0d7 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 111 121 7.4E-14 T 14-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 YP_0470 24581eb8c2ba7bd79c5837445181b0d7 202 TIGRFAM TIGR00498 lexA: repressor LexA 1 199 2.8E-83 T 14-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 YP_3972 f1bd1488ff5931b279c69926a564d05b 207 SUPERFAMILY SSF54719 95 206 3.93E-45 T 14-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_3972 f1bd1488ff5931b279c69926a564d05b 207 Gene3D G3DSA:1.10.287.990 20 90 1.9E-31 T 14-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_3972 f1bd1488ff5931b279c69926a564d05b 207 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 89 1.7E-31 T 14-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_3972 f1bd1488ff5931b279c69926a564d05b 207 PIRSF PIRSF000349 1 207 7.7E-80 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_3972 f1bd1488ff5931b279c69926a564d05b 207 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 169 176 - T 14-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_3972 f1bd1488ff5931b279c69926a564d05b 207 SUPERFAMILY SSF46609 1 90 3.27E-36 T 14-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_3972 f1bd1488ff5931b279c69926a564d05b 207 PRINTS PR01703 Manganese superoxide dismutase signature 124 132 2.8E-27 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_3972 f1bd1488ff5931b279c69926a564d05b 207 PRINTS PR01703 Manganese superoxide dismutase signature 167 179 2.8E-27 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_3972 f1bd1488ff5931b279c69926a564d05b 207 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 2.8E-27 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_3972 f1bd1488ff5931b279c69926a564d05b 207 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 2.8E-27 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_3972 f1bd1488ff5931b279c69926a564d05b 207 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 2.8E-27 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_3972 f1bd1488ff5931b279c69926a564d05b 207 Gene3D G3DSA:2.40.500.20 95 207 4.7E-50 T 14-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_3972 f1bd1488ff5931b279c69926a564d05b 207 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 97 202 2.3E-41 T 14-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_2248 c7f6f8107eee19b41deab8755beea2fe 349 Pfam PF13177 DNA polymerase III, delta subunit 18 170 7.3E-41 T 14-10-2018 YP_2248 c7f6f8107eee19b41deab8755beea2fe 349 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 221 335 2.7E-41 T 14-10-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_2248 c7f6f8107eee19b41deab8755beea2fe 349 SUPERFAMILY SSF48019 222 343 2.55E-36 T 14-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 YP_2248 c7f6f8107eee19b41deab8755beea2fe 349 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 21 214 7.5E-63 T 14-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_2248 c7f6f8107eee19b41deab8755beea2fe 349 Gene3D G3DSA:3.40.50.300 10 175 7.9E-49 T 14-10-2018 YP_2248 c7f6f8107eee19b41deab8755beea2fe 349 SUPERFAMILY SSF52540 10 220 8.11E-49 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2248 c7f6f8107eee19b41deab8755beea2fe 349 Gene3D G3DSA:1.20.272.10 222 344 2.9E-42 T 14-10-2018 YP_0529 287688b229177e55911b4c10816a0f22 101 SUPERFAMILY SSF50182 7 69 5.02E-24 T 14-10-2018 IPR010920 LSM domain superfamily YP_0529 287688b229177e55911b4c10816a0f22 101 Pfam PF17209 Hfq protein 7 69 7.8E-31 T 14-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 YP_0529 287688b229177e55911b4c10816a0f22 101 Gene3D G3DSA:2.30.30.100 1 72 1.5E-34 T 14-10-2018 YP_0529 287688b229177e55911b4c10816a0f22 101 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 2.8E-29 T 14-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 YP_0529 287688b229177e55911b4c10816a0f22 101 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.244 T 14-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 SMART SM00982 1005 1105 1.2E-47 T 14-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 SUPERFAMILY SSF141259 468 545 5.36E-24 T 14-10-2018 IPR036101 CarD-like/TRCF domain superfamily YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 Pfam PF00271 Helicase conserved C-terminal domain 803 906 2.8E-17 T 14-10-2018 IPR001650 Helicase, C-terminal YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 Gene3D G3DSA:3.40.50.11180 24 334 2.5E-129 T 14-10-2018 YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 Gene3D G3DSA:3.40.50.11140 354 450 4.0E-36 T 14-10-2018 YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 145 1079 0.0 T 14-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 SUPERFAMILY SSF143517 992 1144 1.83E-43 T 14-10-2018 IPR037235 TRCF-like, C-terminal domain YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 Gene3D G3DSA:3.30.2060.10 128 213 2.5E-129 T 14-10-2018 YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 Gene3D G3DSA:3.40.50.300 475 987 6.4E-235 T 14-10-2018 YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 SUPERFAMILY SSF52540 8 341 4.69E-102 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 Pfam PF02559 CarD-like/TRCF domain 477 572 2.3E-24 T 14-10-2018 IPR003711 CarD-like/TRCF domain YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 Pfam PF03461 TRCF domain 1007 1097 2.7E-27 T 14-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 SMART SM00487 597 787 6.0E-33 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 SUPERFAMILY SSF52540 520 780 2.45E-64 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 SMART SM00490 823 907 2.8E-19 T 14-10-2018 IPR001650 Helicase, C-terminal YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 32 1127 27.69 T 14-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 SMART SM01058 476 573 6.0E-51 T 14-10-2018 IPR003711 CarD-like/TRCF domain YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 Gene3D G3DSA:2.30.30.840 480 538 6.4E-235 T 14-10-2018 YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 Gene3D G3DSA:3.40.50.300 539 778 6.4E-235 T 14-10-2018 YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 SUPERFAMILY SSF52540 351 463 2.71E-28 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 Gene3D G3DSA:3.90.1150.50 1001 1148 5.6E-46 T 14-10-2018 IPR037235 TRCF-like, C-terminal domain YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 Pfam PF00270 DEAD/DEAH box helicase 602 762 9.6E-19 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YP_1754 4a11c18aa40bf7f54772e0ae10532b42 1148 SUPERFAMILY SSF52540 779 987 1.3E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 SUPERFAMILY SSF47170 25 182 4.71E-50 T 14-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 294 316 - T 14-10-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 1.4E-89 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 1.4E-89 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 1.4E-89 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 1.4E-89 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 191 211 1.4E-89 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 1.4E-89 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 1.4E-89 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 484 1.1E-58 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 Pfam PF00672 HAMP domain 218 264 1.4E-11 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 SMART SM00304 216 268 1.0E-10 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 SMART SM00283 269 516 3.2E-94 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 Gene3D G3DSA:1.10.287.950 216 518 3.3E-98 T 14-10-2018 YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 Gene3D G3DSA:1.20.120.30 22 193 9.8E-60 T 14-10-2018 YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 SMART SM00319 44 182 4.2E-39 T 14-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 Pfam PF02203 Tar ligand binding domain homologue 1 175 2.8E-52 T 14-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 YP_1806 7051a9b78df445ee68b961d7a0cb28c6 557 SUPERFAMILY SSF58104 236 522 1.28E-76 T 14-10-2018 YP_3455 a13902a6c643a531440160ad1e3fd1ed 216 ProSitePatterns PS00949 Autoinducer synthase family signature. 23 48 - T 14-10-2018 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_3455 a13902a6c643a531440160ad1e3fd1ed 216 Gene3D G3DSA:3.40.630.30 1 211 1.5E-56 T 14-10-2018 YP_3455 a13902a6c643a531440160ad1e3fd1ed 216 Pfam PF00765 Autoinducer synthase 13 187 6.5E-71 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_3455 a13902a6c643a531440160ad1e3fd1ed 216 PRINTS PR01549 Autoinducer synthesis protein signature 119 140 1.8E-64 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_3455 a13902a6c643a531440160ad1e3fd1ed 216 PRINTS PR01549 Autoinducer synthesis protein signature 163 180 1.8E-64 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_3455 a13902a6c643a531440160ad1e3fd1ed 216 PRINTS PR01549 Autoinducer synthesis protein signature 39 61 1.8E-64 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_3455 a13902a6c643a531440160ad1e3fd1ed 216 PRINTS PR01549 Autoinducer synthesis protein signature 141 162 1.8E-64 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_3455 a13902a6c643a531440160ad1e3fd1ed 216 PRINTS PR01549 Autoinducer synthesis protein signature 19 38 1.8E-64 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_3455 a13902a6c643a531440160ad1e3fd1ed 216 PRINTS PR01549 Autoinducer synthesis protein signature 62 80 1.8E-64 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_3455 a13902a6c643a531440160ad1e3fd1ed 216 PRINTS PR01549 Autoinducer synthesis protein signature 94 106 1.8E-64 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_3455 a13902a6c643a531440160ad1e3fd1ed 216 SUPERFAMILY SSF55729 1 210 5.93E-46 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_3325 c85ee702d511a1216898b04ded8720e9 314 Gene3D G3DSA:3.40.50.2300 129 304 7.8E-109 T 14-10-2018 YP_3325 c85ee702d511a1216898b04ded8720e9 314 SUPERFAMILY SSF53822 7 308 3.53E-78 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_3325 c85ee702d511a1216898b04ded8720e9 314 Gene3D G3DSA:3.40.50.2300 34 293 7.8E-109 T 14-10-2018 YP_3325 c85ee702d511a1216898b04ded8720e9 314 Pfam PF13407 Periplasmic binding protein domain 30 286 1.1E-55 T 14-10-2018 IPR025997 Periplasmic binding protein YP_2590 6b618b7e732dc4c630a2224f3c279721 820 Gene3D G3DSA:3.40.50.740 63 338 7.6E-74 T 14-10-2018 YP_2590 6b618b7e732dc4c630a2224f3c279721 820 SUPERFAMILY SSF53706 69 702 1.96E-155 T 14-10-2018 YP_2590 6b618b7e732dc4c630a2224f3c279721 820 TIGRFAM TIGR02166 dmsA_ynfE: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 24 820 0.0 T 14-10-2018 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE GO:0009389|GO:0030151|GO:0051539|GO:0055114 YP_2590 6b618b7e732dc4c630a2224f3c279721 820 SUPERFAMILY SSF50692 646 820 6.84E-38 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily YP_2590 6b618b7e732dc4c630a2224f3c279721 820 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 737 764 - T 14-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 YP_2590 6b618b7e732dc4c630a2224f3c279721 820 Gene3D G3DSA:3.40.50.740 378 626 1.7E-43 T 14-10-2018 YP_2590 6b618b7e732dc4c630a2224f3c279721 820 Gene3D G3DSA:2.40.40.20 675 820 5.4E-41 T 14-10-2018 YP_2590 6b618b7e732dc4c630a2224f3c279721 820 Pfam PF00384 Molybdopterin oxidoreductase 129 579 1.4E-76 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2590 6b618b7e732dc4c630a2224f3c279721 820 SMART SM00926 66 126 2.9E-7 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2590 6b618b7e732dc4c630a2224f3c279721 820 Pfam PF01568 Molydopterin dinucleotide binding domain 701 812 2.7E-28 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 YP_2590 6b618b7e732dc4c630a2224f3c279721 820 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 24 54 2.6E-5 T 14-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YP_2590 6b618b7e732dc4c630a2224f3c279721 820 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 70 125 9.6E-8 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2590 6b618b7e732dc4c630a2224f3c279721 820 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 71 89 - T 14-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 YP_1908 344377c1da82b6925d8e459888d27d68 341 SUPERFAMILY SSF46689 52 132 4.48E-21 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_1908 344377c1da82b6925d8e459888d27d68 341 Pfam PF01380 SIS domain 176 304 4.1E-25 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YP_1908 344377c1da82b6925d8e459888d27d68 341 Gene3D G3DSA:1.10.10.10 50 131 4.6E-27 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1908 344377c1da82b6925d8e459888d27d68 341 Pfam PF01418 Helix-turn-helix domain, rpiR family 53 128 3.3E-29 T 14-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 YP_1908 344377c1da82b6925d8e459888d27d68 341 Gene3D G3DSA:3.40.50.10490 147 329 6.1E-43 T 14-10-2018 YP_1908 344377c1da82b6925d8e459888d27d68 341 SUPERFAMILY SSF53697 146 329 1.62E-42 T 14-10-2018 YP_3934 19b780f3306f3543544988847ab708e5 140 SUPERFAMILY SSF55724 1 137 6.8E-44 T 14-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YP_3934 19b780f3306f3543544988847ab708e5 140 Gene3D G3DSA:3.40.1000.10 1 140 1.9E-36 T 14-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YP_3934 19b780f3306f3543544988847ab708e5 140 Pfam PF08786 DcrB 6 133 2.6E-36 T 14-10-2018 IPR014894 Protein DcrB YP_1235 b036a2b3c6b995a80ba98ce18f59749e 550 Gene3D G3DSA:1.20.1270.20 149 232 3.5E-28 T 14-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 YP_1235 b036a2b3c6b995a80ba98ce18f59749e 550 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 1 548 3.5E-250 T 14-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 YP_1235 b036a2b3c6b995a80ba98ce18f59749e 550 Gene3D G3DSA:3.40.50.2030 380 548 5.7E-59 T 14-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 YP_1235 b036a2b3c6b995a80ba98ce18f59749e 550 Gene3D G3DSA:1.20.1270.20 1 139 2.1E-35 T 14-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 YP_1235 b036a2b3c6b995a80ba98ce18f59749e 550 SUPERFAMILY SSF56821 1 549 1.68E-188 T 14-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 YP_1235 b036a2b3c6b995a80ba98ce18f59749e 550 PIRSF PIRSF000076 1 550 3.6E-241 T 14-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 YP_1235 b036a2b3c6b995a80ba98ce18f59749e 550 Hamap MF_00069 Hydroxylamine reductase [hcp]. 1 549 20.697 T 14-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 YP_1235 b036a2b3c6b995a80ba98ce18f59749e 550 Pfam PF03063 Prismane/CO dehydrogenase family 1 545 1.8E-159 T 14-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 YP_1235 b036a2b3c6b995a80ba98ce18f59749e 550 Gene3D G3DSA:3.40.50.2030 234 379 8.5E-60 T 14-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 YP_0621 2c4ee77d09def1ad1c14edb5d0d31761 293 SUPERFAMILY SSF52540 60 281 4.34E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0621 2c4ee77d09def1ad1c14edb5d0d31761 293 TIGRFAM TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL 60 281 9.9E-109 T 14-10-2018 IPR012701 Phosphonate C-P lyase system, PhnL KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YP_0621 2c4ee77d09def1ad1c14edb5d0d31761 293 SMART SM00382 91 284 1.2E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0621 2c4ee77d09def1ad1c14edb5d0d31761 293 ProSitePatterns PS00211 ABC transporters family signature. 208 222 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0621 2c4ee77d09def1ad1c14edb5d0d31761 293 Gene3D G3DSA:3.40.50.300 59 287 1.3E-48 T 14-10-2018 YP_0621 2c4ee77d09def1ad1c14edb5d0d31761 293 Pfam PF00005 ABC transporter 82 236 5.3E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0282 a0c0b7560e425fda6d6c4531e390169f 126 Pfam PF02261 Aspartate decarboxylase 1 114 3.3E-47 T 14-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 YP_0282 a0c0b7560e425fda6d6c4531e390169f 126 PIRSF PIRSF006246 1 125 1.8E-52 T 14-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 YP_0282 a0c0b7560e425fda6d6c4531e390169f 126 Gene3D G3DSA:2.40.40.20 1 126 2.7E-53 T 14-10-2018 YP_0282 a0c0b7560e425fda6d6c4531e390169f 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 123 1.0E-65 T 14-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 YP_0282 a0c0b7560e425fda6d6c4531e390169f 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 69.137 T 14-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 YP_0282 a0c0b7560e425fda6d6c4531e390169f 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 126 6.8E-59 T 14-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 YP_0282 a0c0b7560e425fda6d6c4531e390169f 126 SUPERFAMILY SSF50692 1 115 5.84E-46 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily YP_4018 1aa4d9b77d8a19deb731db99aae4336b 284 SUPERFAMILY SSF53850 12 262 8.83E-66 T 14-10-2018 YP_4018 1aa4d9b77d8a19deb731db99aae4336b 284 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 64 77 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site YP_4018 1aa4d9b77d8a19deb731db99aae4336b 284 Gene3D G3DSA:3.40.190.10 32 256 2.9E-63 T 14-10-2018 YP_4018 1aa4d9b77d8a19deb731db99aae4336b 284 Gene3D G3DSA:3.40.190.10 128 221 2.9E-63 T 14-10-2018 YP_4018 1aa4d9b77d8a19deb731db99aae4336b 284 SMART SM00062 40 263 3.3E-63 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_4018 1aa4d9b77d8a19deb731db99aae4336b 284 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 41 261 4.3E-57 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_0994 78de26b5de5dd9738f5559e662ffc5f0 567 Gene3D G3DSA:4.10.450.10 36 199 3.7E-178 T 14-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 YP_0994 78de26b5de5dd9738f5559e662ffc5f0 567 Gene3D G3DSA:3.30.410.40 152 474 3.7E-178 T 14-10-2018 YP_0994 78de26b5de5dd9738f5559e662ffc5f0 567 TIGRFAM TIGR01810 betA: choline dehydrogenase 4 537 2.9E-282 T 14-10-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 YP_0994 78de26b5de5dd9738f5559e662ffc5f0 567 PIRSF PIRSF000137 1 542 2.2E-141 T 14-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 YP_0994 78de26b5de5dd9738f5559e662ffc5f0 567 SUPERFAMILY SSF54373 295 477 4.81E-62 T 14-10-2018 YP_0994 78de26b5de5dd9738f5559e662ffc5f0 567 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 259 273 - T 14-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 YP_0994 78de26b5de5dd9738f5559e662ffc5f0 567 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 82 105 - T 14-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 YP_0994 78de26b5de5dd9738f5559e662ffc5f0 567 Pfam PF05199 GMC oxidoreductase 393 527 4.9E-42 T 14-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 YP_0994 78de26b5de5dd9738f5559e662ffc5f0 567 Gene3D G3DSA:3.50.50.60 2 531 3.7E-178 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0994 78de26b5de5dd9738f5559e662ffc5f0 567 SUPERFAMILY SSF51905 1 535 6.62E-91 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0994 78de26b5de5dd9738f5559e662ffc5f0 567 Pfam PF00732 GMC oxidoreductase 3 300 4.1E-98 T 14-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 YP_0994 78de26b5de5dd9738f5559e662ffc5f0 567 Gene3D G3DSA:1.10.1220.110 97 151 3.7E-178 T 14-10-2018 YP_0994 78de26b5de5dd9738f5559e662ffc5f0 567 Hamap MF_00750 Oxygen-dependent choline dehydrogenase [betA]. 1 554 61.595 T 14-10-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 YP_1446 8a05d4a2790abc515c0ee0896da42b38 476 Pfam PF08411 Exonuclease C-terminal 211 472 9.9E-109 T 14-10-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 YP_1446 8a05d4a2790abc515c0ee0896da42b38 476 SUPERFAMILY SSF53098 8 474 2.28E-134 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1446 8a05d4a2790abc515c0ee0896da42b38 476 PIRSF PIRSF000977 2 476 8.6E-206 T 14-10-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 YP_1446 8a05d4a2790abc515c0ee0896da42b38 476 Pfam PF00929 Exonuclease 12 191 2.0E-26 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III YP_1446 8a05d4a2790abc515c0ee0896da42b38 476 Gene3D G3DSA:1.20.1280.70 360 420 3.0E-26 T 14-10-2018 YP_1446 8a05d4a2790abc515c0ee0896da42b38 476 Gene3D G3DSA:2.30.30.450 213 353 3.7E-59 T 14-10-2018 IPR038649 Exonuclease I, SH3-like domain superfamily YP_1446 8a05d4a2790abc515c0ee0896da42b38 476 Gene3D G3DSA:3.30.420.10 1 200 4.3E-71 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_2924 0f410b097dd63735598ce3023d0a5c9f 761 Gene3D G3DSA:2.40.128.130 487 761 6.5E-20 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_2924 0f410b097dd63735598ce3023d0a5c9f 761 SUPERFAMILY SSF103515 454 761 1.31E-35 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_2924 0f410b097dd63735598ce3023d0a5c9f 761 SMART SM00869 484 751 7.8E-26 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_2924 0f410b097dd63735598ce3023d0a5c9f 761 Pfam PF03797 Autotransporter beta-domain 488 739 8.9E-24 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_0662 34f0e7b4cbbba455900c79c6a8d70308 393 SUPERFAMILY SSF55315 147 224 2.24E-9 T 14-10-2018 IPR029064 50S ribosomal protein L30e-like YP_0662 34f0e7b4cbbba455900c79c6a8d70308 393 SMART SM00967 154 229 2.2E-8 T 14-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 YP_0662 34f0e7b4cbbba455900c79c6a8d70308 393 Pfam PF00588 SpoU rRNA Methylase family 245 382 5.1E-31 T 14-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 YP_0662 34f0e7b4cbbba455900c79c6a8d70308 393 Gene3D G3DSA:3.40.1280.10 221 393 1.1E-40 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YP_0662 34f0e7b4cbbba455900c79c6a8d70308 393 PIRSF PIRSF006280 6 391 2.1E-197 T 14-10-2018 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted GO:0008168 YP_0662 34f0e7b4cbbba455900c79c6a8d70308 393 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 155 227 1.3E-11 T 14-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 YP_0662 34f0e7b4cbbba455900c79c6a8d70308 393 SUPERFAMILY SSF75217 238 390 7.85E-40 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases YP_0410 79712372196d3f0fc57a4a880f3edb1e 523 Gene3D G3DSA:3.55.50.30 46 129 6.7E-23 T 14-10-2018 YP_0410 79712372196d3f0fc57a4a880f3edb1e 523 Gene3D G3DSA:3.30.1370.120 131 198 1.7E-24 T 14-10-2018 IPR038591 NolW-like superfamily YP_0410 79712372196d3f0fc57a4a880f3edb1e 523 Gene3D G3DSA:3.30.1370.120 201 295 1.4E-12 T 14-10-2018 IPR038591 NolW-like superfamily YP_0410 79712372196d3f0fc57a4a880f3edb1e 523 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 498 517 8.7E-39 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YP_0410 79712372196d3f0fc57a4a880f3edb1e 523 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 217 234 8.7E-39 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YP_0410 79712372196d3f0fc57a4a880f3edb1e 523 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 407 422 8.7E-39 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YP_0410 79712372196d3f0fc57a4a880f3edb1e 523 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 299 319 8.7E-39 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YP_0410 79712372196d3f0fc57a4a880f3edb1e 523 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 373 392 8.7E-39 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YP_0410 79712372196d3f0fc57a4a880f3edb1e 523 Pfam PF03958 Bacterial type II/III secretion system short domain 205 297 9.0E-19 T 14-10-2018 IPR005644 NolW-like YP_0410 79712372196d3f0fc57a4a880f3edb1e 523 TIGRFAM TIGR02516 type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family 58 520 5.7E-186 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YP_0410 79712372196d3f0fc57a4a880f3edb1e 523 Pfam PF00263 Bacterial type II and III secretion system protein 360 516 3.0E-35 T 14-10-2018 IPR004846 Type II/III secretion system GO:0009306 YP_0410 79712372196d3f0fc57a4a880f3edb1e 523 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 465 498 - T 14-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 YP_2917 f05ba7272383d64dfb357d51ad22c193 212 PIRSF PIRSF020634 1 211 9.6E-80 T 14-10-2018 IPR011392 Tellurite resistance, TerY YP_2917 f05ba7272383d64dfb357d51ad22c193 212 Gene3D G3DSA:3.40.50.410 6 177 4.3E-21 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YP_2917 f05ba7272383d64dfb357d51ad22c193 212 SUPERFAMILY SSF53300 5 159 4.87E-23 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YP_2917 f05ba7272383d64dfb357d51ad22c193 212 SMART SM00327 3 178 4.3E-13 T 14-10-2018 IPR002035 von Willebrand factor, type A YP_2917 f05ba7272383d64dfb357d51ad22c193 212 Pfam PF00092 von Willebrand factor type A domain 6 156 1.9E-13 T 14-10-2018 IPR002035 von Willebrand factor, type A YP_1176 85563fdb6234f3cc98aaa9c88ad1bda0 370 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 299 362 2.1E-12 T 14-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 YP_1176 85563fdb6234f3cc98aaa9c88ad1bda0 370 SUPERFAMILY SSF50800 3 264 8.37E-17 T 14-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily YP_1176 85563fdb6234f3cc98aaa9c88ad1bda0 370 Pfam PF03473 MOSC domain 140 262 2.6E-28 T 14-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 YP_1176 85563fdb6234f3cc98aaa9c88ad1bda0 370 Pfam PF03476 MOSC N-terminal beta barrel domain 3 117 2.4E-29 T 14-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 YP_1176 85563fdb6234f3cc98aaa9c88ad1bda0 370 SUPERFAMILY SSF54292 283 367 1.14E-20 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YP_1176 85563fdb6234f3cc98aaa9c88ad1bda0 370 SUPERFAMILY SSF141673 5 133 2.62E-29 T 14-10-2018 YP_1176 85563fdb6234f3cc98aaa9c88ad1bda0 370 Gene3D G3DSA:3.10.20.30 276 369 9.0E-17 T 14-10-2018 IPR012675 Beta-grasp domain superfamily YP_1176 85563fdb6234f3cc98aaa9c88ad1bda0 370 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 323 331 - T 14-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 YP_1202 254e9bb73396fc3b5b6be9bcd83b8173 230 Gene3D G3DSA:3.40.50.300 1 230 1.5E-86 T 14-10-2018 YP_1202 254e9bb73396fc3b5b6be9bcd83b8173 230 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 219 5.0E-92 T 14-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 YP_1202 254e9bb73396fc3b5b6be9bcd83b8173 230 SUPERFAMILY SSF52540 6 224 3.05E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1202 254e9bb73396fc3b5b6be9bcd83b8173 230 Hamap MF_00238 Cytidylate kinase [cmk]. 6 224 33.924 T 14-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 YP_1202 254e9bb73396fc3b5b6be9bcd83b8173 230 Pfam PF02224 Cytidylate kinase 8 221 3.1E-81 T 14-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 YP_1162 545e4d3cab6de0d7f4ee845c6af2be8e 297 PRINTS PR00069 Aldo-keto reductase signature 49 73 1.0E-44 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_1162 545e4d3cab6de0d7f4ee845c6af2be8e 297 PRINTS PR00069 Aldo-keto reductase signature 105 123 1.0E-44 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_1162 545e4d3cab6de0d7f4ee845c6af2be8e 297 PRINTS PR00069 Aldo-keto reductase signature 134 151 1.0E-44 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_1162 545e4d3cab6de0d7f4ee845c6af2be8e 297 PRINTS PR00069 Aldo-keto reductase signature 207 231 1.0E-44 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_1162 545e4d3cab6de0d7f4ee845c6af2be8e 297 PRINTS PR00069 Aldo-keto reductase signature 168 197 1.0E-44 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_1162 545e4d3cab6de0d7f4ee845c6af2be8e 297 Pfam PF00248 Aldo/keto reductase family 29 271 5.3E-47 T 14-10-2018 IPR023210 NADP-dependent oxidoreductase domain YP_1162 545e4d3cab6de0d7f4ee845c6af2be8e 297 SUPERFAMILY SSF51430 15 276 5.5E-88 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_1162 545e4d3cab6de0d7f4ee845c6af2be8e 297 Gene3D G3DSA:3.20.20.100 2 297 5.8E-130 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_1162 545e4d3cab6de0d7f4ee845c6af2be8e 297 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 134 151 - T 14-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 YP_1162 545e4d3cab6de0d7f4ee845c6af2be8e 297 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 53 70 - T 14-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 YP_1162 545e4d3cab6de0d7f4ee845c6af2be8e 297 PIRSF PIRSF000097 125 285 4.9E-40 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_1162 545e4d3cab6de0d7f4ee845c6af2be8e 297 PIRSF PIRSF000097 11 129 3.0E-38 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_0754 5494c210234f1a93563ac7fc490281af 619 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 12 619 0.0 T 14-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YP_0754 5494c210234f1a93563ac7fc490281af 619 ProSitePatterns PS00802 Transketolase signature 2. 425 441 - T 14-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YP_0754 5494c210234f1a93563ac7fc490281af 619 SUPERFAMILY SSF52518 9 381 1.29E-75 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_0754 5494c210234f1a93563ac7fc490281af 619 Gene3D G3DSA:3.40.50.970 316 487 1.2E-68 T 14-10-2018 YP_0754 5494c210234f1a93563ac7fc490281af 619 SMART SM00861 319 483 1.1E-67 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain YP_0754 5494c210234f1a93563ac7fc490281af 619 ProSitePatterns PS00801 Transketolase signature 1. 36 55 - T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YP_0754 5494c210234f1a93563ac7fc490281af 619 Pfam PF02779 Transketolase, pyrimidine binding domain 320 479 9.4E-40 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain YP_0754 5494c210234f1a93563ac7fc490281af 619 SUPERFAMILY SSF52922 490 618 3.8E-33 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YP_0754 5494c210234f1a93563ac7fc490281af 619 Gene3D G3DSA:3.40.50.920 494 619 2.6E-45 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YP_0754 5494c210234f1a93563ac7fc490281af 619 Pfam PF02780 Transketolase, C-terminal domain 494 610 6.4E-26 T 14-10-2018 IPR033248 Transketolase, C-terminal domain YP_0754 5494c210234f1a93563ac7fc490281af 619 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 10 619 46.052 T 14-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YP_0754 5494c210234f1a93563ac7fc490281af 619 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 14 282 3.3E-116 T 14-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YP_0754 5494c210234f1a93563ac7fc490281af 619 SUPERFAMILY SSF52518 316 503 3.84E-61 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_2154 003f03157bc3dfe386f38ce71e55fcbb 286 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 1 284 1.3E-128 T 14-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 YP_2154 003f03157bc3dfe386f38ce71e55fcbb 286 Hamap MF_01639 Pyridoxal kinase PdxY [pdxY]. 1 286 53.66 T 14-10-2018 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282 YP_2154 003f03157bc3dfe386f38ce71e55fcbb 286 Gene3D G3DSA:3.40.1190.20 1 286 5.5E-91 T 14-10-2018 IPR029056 Ribokinase-like YP_2154 003f03157bc3dfe386f38ce71e55fcbb 286 SUPERFAMILY SSF53613 1 279 2.03E-76 T 14-10-2018 IPR029056 Ribokinase-like YP_2154 003f03157bc3dfe386f38ce71e55fcbb 286 Pfam PF08543 Phosphomethylpyrimidine kinase 90 263 1.4E-16 T 14-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 Pfam PF05860 haemagglutination activity domain 78 211 1.0E-31 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 687 725 0.31 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 625 663 0.064 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 357 392 2.1E-4 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 841 867 0.064 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 517 548 0.019 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 645 675 0.098 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1239 1276 0.013 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 111 207 6.3E-21 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 Pfam PF05594 Haemagluttinin repeat 517 576 0.34 T 14-10-2018 IPR008619 Filamentous haemagglutinin repeat YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 Pfam PF05594 Haemagluttinin repeat 930 974 57.0 T 14-10-2018 IPR008619 Filamentous haemagglutinin repeat YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 Pfam PF05594 Haemagluttinin repeat 1214 1272 3.4 T 14-10-2018 IPR008619 Filamentous haemagglutinin repeat YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 Pfam PF05594 Haemagluttinin repeat 320 377 1.9E-4 T 14-10-2018 IPR008619 Filamentous haemagglutinin repeat YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 Pfam PF05594 Haemagluttinin repeat 600 673 100.0 T 14-10-2018 IPR008619 Filamentous haemagglutinin repeat YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 Pfam PF05594 Haemagluttinin repeat 684 744 0.33 T 14-10-2018 IPR008619 Filamentous haemagglutinin repeat YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 Pfam PF13018 Extended Signal Peptide of Type V secretion system 5 28 6.2E-6 T 14-10-2018 IPR024973 ESPR domain YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 SMART SM00912 92 212 4.0E-45 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 SUPERFAMILY SSF51126 81 349 8.47E-66 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 Pfam PF13332 Haemagluttinin repeat 1460 1524 4.3E-4 T 14-10-2018 IPR025157 Hemagglutinin repeat YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 Pfam PF13332 Haemagluttinin repeat 1748 1923 1.5E-43 T 14-10-2018 IPR025157 Hemagglutinin repeat YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 Pfam PF13332 Haemagluttinin repeat 1526 1682 6.0E-9 T 14-10-2018 IPR025157 Hemagglutinin repeat YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 Pfam PF04829 Pre-toxin domain with VENN motif 2277 2327 1.8E-22 T 14-10-2018 IPR006914 VENN motif-containing domain YP_2305 aa7fb63c32e38494c5b38bfe5d57fc6b 2578 Gene3D G3DSA:2.160.20.10 79 373 3.9E-104 T 14-10-2018 IPR012334 Pectin lyase fold YP_0861 acaa4a55e8ce8ef8a186ee2b49ca48c9 99 SUPERFAMILY SSF56349 3 91 3.83E-13 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YP_0861 acaa4a55e8ce8ef8a186ee2b49ca48c9 99 Pfam PF00589 Phage integrase family 2 90 5.4E-14 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YP_0861 acaa4a55e8ce8ef8a186ee2b49ca48c9 99 Gene3D G3DSA:1.10.443.10 2 94 1.3E-12 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 Gene3D G3DSA:3.40.50.620 373 592 1.1E-58 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 SUPERFAMILY SSF46589 898 962 7.32E-16 T 14-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 PRINTS PR00986 Valyl-tRNA synthetase signature 514 532 2.1E-35 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 PRINTS PR00986 Valyl-tRNA synthetase signature 483 504 2.1E-35 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 PRINTS PR00986 Valyl-tRNA synthetase signature 383 396 2.1E-35 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 PRINTS PR00986 Valyl-tRNA synthetase signature 250 267 2.1E-35 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 PRINTS PR00986 Valyl-tRNA synthetase signature 49 60 2.1E-35 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 Gene3D G3DSA:3.90.740.10 211 372 2.9E-49 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 Gene3D G3DSA:1.10.730.10 593 831 1.1E-72 T 14-10-2018 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 SUPERFAMILY SSF47323 656 913 4.86E-72 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 645 1.9E-230 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 Pfam PF08264 Anticodon-binding domain of tRNA 688 839 1.2E-43 T 14-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 TIGRFAM TIGR00422 valS: valine--tRNA ligase 16 945 0.0 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 Gene3D G3DSA:1.10.287.380 891 963 4.0E-19 T 14-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 56 67 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 900 958 5.5E-17 T 14-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 Hamap MF_02004 Valine--tRNA ligase [valS]. 15 963 16.201 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 SUPERFAMILY SSF50677 205 379 1.44E-57 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 Gene3D G3DSA:3.40.50.620 16 210 2.5E-64 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0641 0a4a19bbefe4ea3a29ab36294e82b974 965 SUPERFAMILY SSF52374 14 655 1.77E-136 T 14-10-2018 YP_1956 8c5f7dd02b52866b1314e6e53d553ff7 291 Pfam PF01263 Aldose 1-epimerase 28 275 3.8E-45 T 14-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 YP_1956 8c5f7dd02b52866b1314e6e53d553ff7 291 SUPERFAMILY SSF74650 8 285 1.65E-71 T 14-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 YP_1956 8c5f7dd02b52866b1314e6e53d553ff7 291 PIRSF PIRSF016020 8 291 2.3E-55 T 14-10-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 YP_1956 8c5f7dd02b52866b1314e6e53d553ff7 291 Gene3D G3DSA:2.70.98.10 1 289 4.0E-94 T 14-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 YP_3421 dfab32463162bcbb70aeb4ec02bbf4e3 410 SUPERFAMILY SSF55031 212 322 2.72E-33 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain YP_3421 dfab32463162bcbb70aeb4ec02bbf4e3 410 Pfam PF01546 Peptidase family M20/M25/M40 143 400 2.0E-10 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 YP_3421 dfab32463162bcbb70aeb4ec02bbf4e3 410 PIRSF PIRSF037215 4 410 5.3E-158 T 14-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 YP_3421 dfab32463162bcbb70aeb4ec02bbf4e3 410 SUPERFAMILY SSF53187 7 407 2.25E-72 T 14-10-2018 YP_3421 dfab32463162bcbb70aeb4ec02bbf4e3 410 Pfam PF07687 Peptidase dimerisation domain 209 309 1.8E-10 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain YP_3421 dfab32463162bcbb70aeb4ec02bbf4e3 410 TIGRFAM TIGR01882 peptidase-T: peptidase T 7 398 9.0E-102 T 14-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 YP_3421 dfab32463162bcbb70aeb4ec02bbf4e3 410 Gene3D G3DSA:3.30.70.360 212 322 5.6E-137 T 14-10-2018 YP_3421 dfab32463162bcbb70aeb4ec02bbf4e3 410 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 142 179 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 YP_3421 dfab32463162bcbb70aeb4ec02bbf4e3 410 Gene3D G3DSA:3.40.630.10 9 401 5.6E-137 T 14-10-2018 YP_0310 0223a33ec98493f3832d19d37e449051 431 PIRSF PIRSF001400 1 429 1.2E-191 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0310 0223a33ec98493f3832d19d37e449051 431 SUPERFAMILY SSF51604 143 427 1.84E-127 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YP_0310 0223a33ec98493f3832d19d37e449051 431 Gene3D G3DSA:3.30.390.10 3 127 1.0E-54 T 14-10-2018 IPR029017 Enolase-like, N-terminal YP_0310 0223a33ec98493f3832d19d37e449051 431 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 429 1.1E-139 T 14-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0310 0223a33ec98493f3832d19d37e449051 431 SUPERFAMILY SSF54826 3 138 3.16E-56 T 14-10-2018 YP_0310 0223a33ec98493f3832d19d37e449051 431 Hamap MF_00318 Enolase [eno]. 2 416 44.117 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0310 0223a33ec98493f3832d19d37e449051 431 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 428 3.1E-205 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0310 0223a33ec98493f3832d19d37e449051 431 Pfam PF03952 Enolase, N-terminal domain 4 134 2.6E-58 T 14-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0310 0223a33ec98493f3832d19d37e449051 431 SMART SM01193 4 134 5.3E-93 T 14-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0310 0223a33ec98493f3832d19d37e449051 431 SMART SM01192 143 430 1.2E-212 T 14-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0310 0223a33ec98493f3832d19d37e449051 431 Gene3D G3DSA:3.20.20.120 128 431 1.3E-136 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YP_0310 0223a33ec98493f3832d19d37e449051 431 PRINTS PR00148 Enolase signature 107 123 1.2E-44 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0310 0223a33ec98493f3832d19d37e449051 431 PRINTS PR00148 Enolase signature 37 51 1.2E-44 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0310 0223a33ec98493f3832d19d37e449051 431 PRINTS PR00148 Enolase signature 165 178 1.2E-44 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0310 0223a33ec98493f3832d19d37e449051 431 PRINTS PR00148 Enolase signature 368 385 1.2E-44 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0310 0223a33ec98493f3832d19d37e449051 431 PRINTS PR00148 Enolase signature 316 327 1.2E-44 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0310 0223a33ec98493f3832d19d37e449051 431 PRINTS PR00148 Enolase signature 339 353 1.2E-44 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0310 0223a33ec98493f3832d19d37e449051 431 ProSitePatterns PS00164 Enolase signature. 339 352 - T 14-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_2201 0157d5c8c56de0843e83bdc908667f62 143 SUPERFAMILY SSF54001 23 143 3.19E-38 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily YP_2201 0157d5c8c56de0843e83bdc908667f62 143 Gene3D G3DSA:3.90.1720.10 21 143 4.4E-38 T 14-10-2018 YP_2201 0157d5c8c56de0843e83bdc908667f62 143 Pfam PF00877 NlpC/P60 family 36 142 1.1E-27 T 14-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain YP_2031 c83366b152d40a3d24c299d3dbb26071 265 ProSitePatterns PS01054 Transaldolase signature 1. 68 76 - T 14-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 YP_2031 c83366b152d40a3d24c299d3dbb26071 265 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 47 250 2.3E-43 T 14-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 YP_2031 c83366b152d40a3d24c299d3dbb26071 265 ProSitePatterns PS00958 Transaldolase active site. 126 143 - T 14-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 YP_2031 c83366b152d40a3d24c299d3dbb26071 265 SUPERFAMILY SSF51569 45 260 7.43E-63 T 14-10-2018 YP_2031 c83366b152d40a3d24c299d3dbb26071 265 Gene3D G3DSA:3.20.20.70 41 264 2.3E-77 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_2031 c83366b152d40a3d24c299d3dbb26071 265 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 45 258 4.5E-81 T 14-10-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 YP_2632 c78cb26d8f29d496881aaede08265e0d 514 SMART SM00388 280 350 5.2E-16 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_2632 c78cb26d8f29d496881aaede08265e0d 514 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 346 2.5E-15 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_2632 c78cb26d8f29d496881aaede08265e0d 514 Gene3D G3DSA:3.30.565.10 352 509 9.6E-36 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2632 c78cb26d8f29d496881aaede08265e0d 514 SUPERFAMILY SSF55874 340 501 1.83E-37 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2632 c78cb26d8f29d496881aaede08265e0d 514 SUPERFAMILY SSF47384 265 347 3.73E-16 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_2632 c78cb26d8f29d496881aaede08265e0d 514 Gene3D G3DSA:1.10.287.130 274 349 1.2E-17 T 14-10-2018 YP_2632 c78cb26d8f29d496881aaede08265e0d 514 SMART SM00387 391 502 6.4E-31 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_2632 c78cb26d8f29d496881aaede08265e0d 514 PRINTS PR00344 Bacterial sensor protein C-terminal signature 486 499 1.1E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2632 c78cb26d8f29d496881aaede08265e0d 514 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 456 1.1E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2632 c78cb26d8f29d496881aaede08265e0d 514 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 481 1.1E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2632 c78cb26d8f29d496881aaede08265e0d 514 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 442 1.1E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2632 c78cb26d8f29d496881aaede08265e0d 514 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 391 501 4.1E-21 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_2718 61caf5ef7c37bddfcf193c5553819d02 443 SMART SM00387 328 440 2.3E-29 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_2718 61caf5ef7c37bddfcf193c5553819d02 443 Gene3D G3DSA:1.10.287.130 165 276 2.0E-28 T 14-10-2018 YP_2718 61caf5ef7c37bddfcf193c5553819d02 443 Pfam PF00512 His Kinase A (phospho-acceptor) domain 219 283 2.7E-15 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_2718 61caf5ef7c37bddfcf193c5553819d02 443 SMART SM00304 166 218 6.8E-14 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_2718 61caf5ef7c37bddfcf193c5553819d02 443 SUPERFAMILY SSF158472 167 215 2.75E-10 T 14-10-2018 YP_2718 61caf5ef7c37bddfcf193c5553819d02 443 SUPERFAMILY SSF55874 272 438 1.07E-39 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2718 61caf5ef7c37bddfcf193c5553819d02 443 SMART SM00388 219 283 1.4E-15 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_2718 61caf5ef7c37bddfcf193c5553819d02 443 Pfam PF00672 HAMP domain 166 214 1.1E-12 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_2718 61caf5ef7c37bddfcf193c5553819d02 443 Gene3D G3DSA:3.30.565.10 288 440 4.9E-36 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2718 61caf5ef7c37bddfcf193c5553819d02 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 365 379 6.2E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2718 61caf5ef7c37bddfcf193c5553819d02 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 393 6.2E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2718 61caf5ef7c37bddfcf193c5553819d02 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 418 6.2E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2718 61caf5ef7c37bddfcf193c5553819d02 443 SUPERFAMILY SSF47384 202 283 1.02E-16 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_2718 61caf5ef7c37bddfcf193c5553819d02 443 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 328 438 3.6E-20 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_2331 f45c55a141a0fa2eeac9588d82078f4e 336 Gene3D G3DSA:3.40.50.150 60 322 3.2E-78 T 14-10-2018 YP_2331 f45c55a141a0fa2eeac9588d82078f4e 336 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 26 325 53.881 T 14-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 YP_2331 f45c55a141a0fa2eeac9588d82078f4e 336 SUPERFAMILY SSF53335 63 321 7.94E-31 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_2331 f45c55a141a0fa2eeac9588d82078f4e 336 PIRSF PIRSF029038 15 335 9.5E-154 T 14-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 YP_2331 f45c55a141a0fa2eeac9588d82078f4e 336 Pfam PF05971 Protein of unknown function (DUF890) 25 322 6.3E-122 T 14-10-2018 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 YP_2254 6921b6e3b114446f07f2df933b9c9d46 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 77 3.9E-37 T 14-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 YP_2254 6921b6e3b114446f07f2df933b9c9d46 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 14-10-2018 IPR006162 Phosphopantetheine attachment site YP_2254 6921b6e3b114446f07f2df933b9c9d46 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 7.7E-16 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain YP_2254 6921b6e3b114446f07f2df933b9c9d46 78 Gene3D G3DSA:1.10.1200.10 1 76 5.4E-29 T 14-10-2018 IPR036736 ACP-like superfamily YP_2254 6921b6e3b114446f07f2df933b9c9d46 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.174 T 14-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 YP_2254 6921b6e3b114446f07f2df933b9c9d46 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 0.003 T 14-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 YP_2254 6921b6e3b114446f07f2df933b9c9d46 78 SUPERFAMILY SSF47336 2 76 1.09E-23 T 14-10-2018 IPR036736 ACP-like superfamily YP_1469 07d2354f72468a39f87ff030fb55fae2 726 Gene3D G3DSA:3.20.20.70 293 608 3.7E-119 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_1469 07d2354f72468a39f87ff030fb55fae2 726 Gene3D G3DSA:2.70.98.60 19 292 9.7E-48 T 14-10-2018 IPR038417 Alpha-galactosidase, N-terminal domain superfamily KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YP_1469 07d2354f72468a39f87ff030fb55fae2 726 SUPERFAMILY SSF51445 307 639 1.55E-108 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_1469 07d2354f72468a39f87ff030fb55fae2 726 ProSitePatterns PS00512 Alpha-galactosidase signature. 341 356 - T 14-10-2018 IPR000111 Glycoside hydrolase family 27/36, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YP_1469 07d2354f72468a39f87ff030fb55fae2 726 Pfam PF02065 Melibiase 272 610 2.8E-122 T 14-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YP_1469 07d2354f72468a39f87ff030fb55fae2 726 Pfam PF16875 Glycosyl hydrolase family 36 N-terminal domain 42 255 7.6E-42 T 14-10-2018 IPR031704 Glycosyl hydrolase family 36, N-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YP_1469 07d2354f72468a39f87ff030fb55fae2 726 PIRSF PIRSF005536 13 725 1.4E-254 T 14-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YP_1469 07d2354f72468a39f87ff030fb55fae2 726 PRINTS PR00743 Glycosyl hydrolase family 36 signature 496 512 1.4E-57 T 14-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YP_1469 07d2354f72468a39f87ff030fb55fae2 726 PRINTS PR00743 Glycosyl hydrolase family 36 signature 224 239 1.4E-57 T 14-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YP_1469 07d2354f72468a39f87ff030fb55fae2 726 PRINTS PR00743 Glycosyl hydrolase family 36 signature 448 463 1.4E-57 T 14-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YP_1469 07d2354f72468a39f87ff030fb55fae2 726 PRINTS PR00743 Glycosyl hydrolase family 36 signature 340 355 1.4E-57 T 14-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YP_1469 07d2354f72468a39f87ff030fb55fae2 726 PRINTS PR00743 Glycosyl hydrolase family 36 signature 275 295 1.4E-57 T 14-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YP_1469 07d2354f72468a39f87ff030fb55fae2 726 PRINTS PR00743 Glycosyl hydrolase family 36 signature 390 412 1.4E-57 T 14-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YP_1469 07d2354f72468a39f87ff030fb55fae2 726 PRINTS PR00743 Glycosyl hydrolase family 36 signature 312 326 1.4E-57 T 14-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YP_1469 07d2354f72468a39f87ff030fb55fae2 726 PRINTS PR00743 Glycosyl hydrolase family 36 signature 521 537 1.4E-57 T 14-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YP_0118 f544590c926fa0f10f68e391065b814d 811 Gene3D G3DSA:1.20.120.1320 52 146 2.7E-73 T 14-10-2018 YP_0118 f544590c926fa0f10f68e391065b814d 811 SUPERFAMILY SSF55347 609 792 2.62E-47 T 14-10-2018 YP_0118 f544590c926fa0f10f68e391065b814d 811 Gene3D G3DSA:3.30.70.260 376 389 3.4E-5 T 14-10-2018 YP_0118 f544590c926fa0f10f68e391065b814d 811 Gene3D G3DSA:3.30.360.10 620 790 2.1E-104 T 14-10-2018 YP_0118 f544590c926fa0f10f68e391065b814d 811 Gene3D G3DSA:3.40.1160.10 16 299 2.7E-73 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YP_0118 f544590c926fa0f10f68e391065b814d 811 ProSitePatterns PS00324 Aspartokinase signature. 15 23 - T 14-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YP_0118 f544590c926fa0f10f68e391065b814d 811 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 655 677 - T 14-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 YP_0118 f544590c926fa0f10f68e391065b814d 811 Gene3D G3DSA:3.40.50.720 461 807 2.1E-104 T 14-10-2018 YP_0118 f544590c926fa0f10f68e391065b814d 811 Pfam PF00742 Homoserine dehydrogenase 609 804 2.0E-43 T 14-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 YP_0118 f544590c926fa0f10f68e391065b814d 811 Gene3D G3DSA:3.30.70.260 390 453 3.4E-5 T 14-10-2018 YP_0118 f544590c926fa0f10f68e391065b814d 811 PIRSF PIRSF000727 13 811 1.1E-290 T 14-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YP_0118 f544590c926fa0f10f68e391065b814d 811 SUPERFAMILY SSF51735 458 631 9.0E-32 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0118 f544590c926fa0f10f68e391065b814d 811 SUPERFAMILY SSF53633 13 300 6.04E-59 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YP_0118 f544590c926fa0f10f68e391065b814d 811 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 466 601 2.6E-21 T 14-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 YP_0118 f544590c926fa0f10f68e391065b814d 811 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 16 454 6.8E-63 T 14-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YP_0118 f544590c926fa0f10f68e391065b814d 811 Pfam PF00696 Amino acid kinase family 13 285 1.3E-42 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 YP_1402 7ad277d3358ebe0867566999b11fba33 294 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 64 139 4.5E-12 T 14-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain YP_1402 7ad277d3358ebe0867566999b11fba33 294 Pfam PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region 157 277 1.4E-46 T 14-10-2018 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 YP_1402 7ad277d3358ebe0867566999b11fba33 294 PIRSF PIRSF006334 14 294 1.8E-112 T 14-10-2018 YP_1402 7ad277d3358ebe0867566999b11fba33 294 SUPERFAMILY SSF53927 1 149 1.07E-42 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 YP_1402 7ad277d3358ebe0867566999b11fba33 294 Gene3D G3DSA:3.40.140.10 29 179 2.5E-43 T 14-10-2018 YP_1402 7ad277d3358ebe0867566999b11fba33 294 TIGRFAM TIGR01355 cyt_deam_dimer: cytidine deaminase 31 285 2.8E-88 T 14-10-2018 IPR006263 Cytidine deaminase, homodimeric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 YP_1402 7ad277d3358ebe0867566999b11fba33 294 SUPERFAMILY SSF53927 154 290 3.96E-40 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 YP_1402 7ad277d3358ebe0867566999b11fba33 294 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 102 136 - T 14-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 YP_1402 7ad277d3358ebe0867566999b11fba33 294 Hamap MF_01558 Cytidine deaminase [cdd]. 1 293 51.055 T 14-10-2018 IPR020797 Cytidine deaminase, bacteria GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 YP_1402 7ad277d3358ebe0867566999b11fba33 294 Gene3D G3DSA:3.40.140.10 180 294 4.8E-28 T 14-10-2018 YP_0336 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 5.4E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0336 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 5.4E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0336 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 5.4E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0336 b9832fc0ea6371e08072f2931162f3f6 256 SUPERFAMILY SSF51735 16 255 9.52E-80 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0336 b9832fc0ea6371e08072f2931162f3f6 256 Gene3D G3DSA:3.40.50.720 4 256 2.4E-80 T 14-10-2018 YP_0336 b9832fc0ea6371e08072f2931162f3f6 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 254 1.2E-68 T 14-10-2018 YP_0336 b9832fc0ea6371e08072f2931162f3f6 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YP_0336 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 1.1E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0336 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 1.1E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0336 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 1.1E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0336 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 1.1E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0336 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 18 35 1.1E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0336 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 1.1E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_3541 69875c6126037be90b574407b58ce5f9 192 Gene3D G3DSA:3.40.50.880 1 183 8.7E-41 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_3541 69875c6126037be90b574407b58ce5f9 192 Pfam PF01965 DJ-1/PfpI family 3 165 1.2E-31 T 14-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 YP_3541 69875c6126037be90b574407b58ce5f9 192 SUPERFAMILY SSF52317 3 172 7.64E-39 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_1313 f52e6f86b7e636bd4e4f096a3abb372a 233 Gene3D G3DSA:1.20.144.10 124 227 1.7E-8 T 14-10-2018 YP_1313 f52e6f86b7e636bd4e4f096a3abb372a 233 Hamap MF_01945 Lipid A 1-diphosphate synthase [lpxT]. 2 233 42.018 T 14-10-2018 IPR032908 Lipid A 1-diphosphate synthase GO:0005886|GO:0043165|GO:0050380 YP_1313 f52e6f86b7e636bd4e4f096a3abb372a 233 Pfam PF01569 PAP2 superfamily 97 202 1.2E-7 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YP_1313 f52e6f86b7e636bd4e4f096a3abb372a 233 SMART SM00014 95 210 2.2E-10 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YP_1313 f52e6f86b7e636bd4e4f096a3abb372a 233 SUPERFAMILY SSF48317 24 222 5.49E-18 T 14-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YP_1601 a6f45aa41dc809b5eeddbc6efbcf8881 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 142 158 6.2E-56 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_1601 a6f45aa41dc809b5eeddbc6efbcf8881 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 191 208 6.2E-56 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_1601 a6f45aa41dc809b5eeddbc6efbcf8881 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 38 51 6.2E-56 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_1601 a6f45aa41dc809b5eeddbc6efbcf8881 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 75 94 6.2E-56 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_1601 a6f45aa41dc809b5eeddbc6efbcf8881 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 161 179 6.2E-56 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_1601 a6f45aa41dc809b5eeddbc6efbcf8881 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 242 256 6.2E-56 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_1601 a6f45aa41dc809b5eeddbc6efbcf8881 692 Gene3D G3DSA:1.10.490.80 596 689 5.7E-8 T 14-10-2018 YP_1601 a6f45aa41dc809b5eeddbc6efbcf8881 692 Gene3D G3DSA:3.40.30.60 361 504 9.8E-52 T 14-10-2018 YP_1601 a6f45aa41dc809b5eeddbc6efbcf8881 692 Pfam PF00771 FHIPEP family 31 681 6.2E-267 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_1601 a6f45aa41dc809b5eeddbc6efbcf8881 692 Gene3D G3DSA:1.10.8.540 505 593 1.1E-29 T 14-10-2018 YP_1601 a6f45aa41dc809b5eeddbc6efbcf8881 692 PIRSF PIRSF005419 15 692 1.6E-240 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_1601 a6f45aa41dc809b5eeddbc6efbcf8881 692 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 22 689 1.3E-277 T 14-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 YP_1601 a6f45aa41dc809b5eeddbc6efbcf8881 692 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 147 170 - T 14-10-2018 IPR025505 FHIPEP conserved site YP_3257 df61ddc4447ac9f2a002b5d36f16cf29 249 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 13 240 1.8E-39 T 14-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 YP_3257 df61ddc4447ac9f2a002b5d36f16cf29 249 Gene3D G3DSA:3.20.20.190 10 237 1.7E-80 T 14-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YP_3257 df61ddc4447ac9f2a002b5d36f16cf29 249 SUPERFAMILY SSF51695 6 242 1.23E-62 T 14-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YP_3179 7f02db07b033e157312bd65ace417a45 365 Hamap MF_02030 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase [wecA]. 9 353 29.142 T 14-10-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819|MetaCyc: PWY-7905 YP_3179 7f02db07b033e157312bd65ace417a45 365 Pfam PF00953 Glycosyl transferase family 4 75 232 5.3E-27 T 14-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 YP_3179 7f02db07b033e157312bd65ace417a45 365 TIGRFAM TIGR02380 ECA_wecA: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 8 350 1.5E-164 T 14-10-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819|MetaCyc: PWY-7905 YP_pCRY13 145ba60059b2f6426e73aaa15f230cfd 227 SUPERFAMILY SSF54427 81 222 8.76E-32 T 14-10-2018 IPR032710 NTF2-like domain superfamily YP_pCRY13 145ba60059b2f6426e73aaa15f230cfd 227 Gene3D G3DSA:3.10.450.230 79 224 4.0E-33 T 14-10-2018 YP_pCRY13 145ba60059b2f6426e73aaa15f230cfd 227 Pfam PF04335 VirB8 protein 10 222 1.1E-54 T 14-10-2018 IPR007430 Bacterial virulence protein VirB8 GO:0016020 YP_3343 e58fcfe488fca91ab536ac6060967121 378 Gene3D G3DSA:3.40.50.10350 1 362 2.9E-144 T 14-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold YP_3343 e58fcfe488fca91ab536ac6060967121 378 Pfam PF02595 Glycerate kinase family 3 374 1.4E-152 T 14-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 YP_3343 e58fcfe488fca91ab536ac6060967121 378 Gene3D G3DSA:3.90.1510.10 42 276 2.9E-144 T 14-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 YP_3343 e58fcfe488fca91ab536ac6060967121 378 PIRSF PIRSF006078 1 377 9.0E-143 T 14-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 YP_3343 e58fcfe488fca91ab536ac6060967121 378 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 375 2.1E-166 T 14-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 YP_3343 e58fcfe488fca91ab536ac6060967121 378 SUPERFAMILY SSF110738 1 376 1.57E-146 T 14-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 YP_3844 66ca847e96a07979bd928b088de607d6 141 Pfam PF01042 Endoribonuclease L-PSP 21 139 1.2E-42 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 YP_3844 66ca847e96a07979bd928b088de607d6 141 SUPERFAMILY SSF55298 18 140 1.07E-42 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YP_3844 66ca847e96a07979bd928b088de607d6 141 Gene3D G3DSA:3.30.1330.40 11 141 5.6E-47 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YP_3844 66ca847e96a07979bd928b088de607d6 141 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 116 134 - T 14-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 YP_3844 66ca847e96a07979bd928b088de607d6 141 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 16 139 5.6E-52 T 14-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 YP_2500 559f8789ec4496dbacbea6407bae3a3f 345 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 250 261 4.6E-29 T 14-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 YP_2500 559f8789ec4496dbacbea6407bae3a3f 345 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 295 306 4.6E-29 T 14-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 YP_2500 559f8789ec4496dbacbea6407bae3a3f 345 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 114 132 4.6E-29 T 14-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 YP_2500 559f8789ec4496dbacbea6407bae3a3f 345 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 269 282 4.6E-29 T 14-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 YP_2500 559f8789ec4496dbacbea6407bae3a3f 345 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 141 162 4.6E-29 T 14-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 YP_2500 559f8789ec4496dbacbea6407bae3a3f 345 ProSitePatterns PS00607 cAMP phosphodiesterases class-II signature. 118 132 - T 14-10-2018 IPR024225 Cyclic-AMP phosphodiesterase class-II, conserved site GO:0008081 YP_2500 559f8789ec4496dbacbea6407bae3a3f 345 PIRSF PIRSF000962 1 344 1.2E-130 T 14-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 YP_2500 559f8789ec4496dbacbea6407bae3a3f 345 SUPERFAMILY SSF56281 42 320 4.87E-20 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_2500 559f8789ec4496dbacbea6407bae3a3f 345 Pfam PF02112 cAMP phosphodiesterases class-II 41 339 4.7E-53 T 14-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 YP_2500 559f8789ec4496dbacbea6407bae3a3f 345 Gene3D G3DSA:3.60.15.10 41 333 9.6E-17 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_2524 144c531e05b1ad0bebee15253fcd873b 243 SUPERFAMILY SSF57863 88 175 5.75E-9 T 14-10-2018 IPR037278 ARFGAP/RecO-like zinc finger YP_2524 144c531e05b1ad0bebee15253fcd873b 243 TIGRFAM TIGR00613 reco: DNA repair protein RecO 7 232 2.4E-38 T 14-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 YP_2524 144c531e05b1ad0bebee15253fcd873b 243 Pfam PF02565 Recombination protein O C terminal 85 228 5.2E-24 T 14-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 YP_2524 144c531e05b1ad0bebee15253fcd873b 243 Gene3D G3DSA:2.40.50.140 3 80 4.6E-33 T 14-10-2018 YP_2524 144c531e05b1ad0bebee15253fcd873b 243 SUPERFAMILY SSF50249 6 77 2.4E-14 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_2524 144c531e05b1ad0bebee15253fcd873b 243 Gene3D G3DSA:1.20.1440.120 81 238 1.6E-55 T 14-10-2018 YP_2524 144c531e05b1ad0bebee15253fcd873b 243 Pfam PF11967 Recombination protein O N terminal 6 78 1.1E-22 T 14-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal YP_2524 144c531e05b1ad0bebee15253fcd873b 243 Hamap MF_00201 DNA repair protein RecO [recO]. 3 233 22.902 T 14-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 YP_1766 381019168da0da6954613e088fddd081 459 SUPERFAMILY SSF48557 13 457 2.83E-105 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 YP_1766 381019168da0da6954613e088fddd081 459 PRINTS PR00149 Fumarate lyase superfamily signature 166 184 4.8E-17 T 14-10-2018 IPR000362 Fumarate lyase family YP_1766 381019168da0da6954613e088fddd081 459 PRINTS PR00149 Fumarate lyase superfamily signature 254 281 4.8E-17 T 14-10-2018 IPR000362 Fumarate lyase family YP_1766 381019168da0da6954613e088fddd081 459 PRINTS PR00149 Fumarate lyase superfamily signature 120 138 4.8E-17 T 14-10-2018 IPR000362 Fumarate lyase family YP_1766 381019168da0da6954613e088fddd081 459 PRINTS PR00149 Fumarate lyase superfamily signature 297 313 4.8E-17 T 14-10-2018 IPR000362 Fumarate lyase family YP_1766 381019168da0da6954613e088fddd081 459 Pfam PF00206 Lyase 17 315 1.5E-78 T 14-10-2018 IPR022761 Fumarate lyase, N-terminal YP_1766 381019168da0da6954613e088fddd081 459 ProSitePatterns PS00163 Fumarate lyases signature. 297 306 - T 14-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 YP_1766 381019168da0da6954613e088fddd081 459 Pfam PF08328 Adenylosuccinate lyase C-terminal 334 448 7.7E-53 T 14-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 YP_1766 381019168da0da6954613e088fddd081 459 Gene3D G3DSA:1.20.200.10 121 449 9.4E-159 T 14-10-2018 YP_1766 381019168da0da6954613e088fddd081 459 Gene3D G3DSA:1.10.275.10 1 120 1.3E-53 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal YP_1766 381019168da0da6954613e088fddd081 459 Gene3D G3DSA:1.10.40.30 385 448 9.4E-159 T 14-10-2018 YP_1766 381019168da0da6954613e088fddd081 459 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 15 458 2.0E-151 T 14-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YP_0999 9a9435a63638b01e4abbe5ba6c1e2c1b 160 Pfam PF01967 MoaC family 16 151 2.2E-54 T 14-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YP_0999 9a9435a63638b01e4abbe5ba6c1e2c1b 160 Gene3D G3DSA:3.30.70.640 2 160 3.1E-70 T 14-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YP_0999 9a9435a63638b01e4abbe5ba6c1e2c1b 160 SUPERFAMILY SSF55040 12 156 5.49E-61 T 14-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YP_0999 9a9435a63638b01e4abbe5ba6c1e2c1b 160 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 5 153 3.5E-71 T 14-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YP_0999 9a9435a63638b01e4abbe5ba6c1e2c1b 160 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 3 159 36.065 T 14-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YP_1175 915ef067e4c9fe9b1b7e40f603f3477a 706 Pfam PF01170 Putative RNA methylase family UPF0020 162 375 1.7E-62 T 14-10-2018 IPR000241 Putative RNA methylase domain YP_1175 915ef067e4c9fe9b1b7e40f603f3477a 706 PIRSF PIRSF037618 1 703 3.1E-293 T 14-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 YP_1175 915ef067e4c9fe9b1b7e40f603f3477a 706 SUPERFAMILY SSF53335 396 701 4.0E-67 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1175 915ef067e4c9fe9b1b7e40f603f3477a 706 Gene3D G3DSA:3.30.2130.30 5 255 3.0E-146 T 14-10-2018 YP_1175 915ef067e4c9fe9b1b7e40f603f3477a 706 SMART SM00981 56 154 1.3E-18 T 14-10-2018 IPR004114 THUMP domain GO:0003723 YP_1175 915ef067e4c9fe9b1b7e40f603f3477a 706 Gene3D G3DSA:3.40.50.150 484 702 7.7E-73 T 14-10-2018 YP_1175 915ef067e4c9fe9b1b7e40f603f3477a 706 Pfam PF02926 THUMP domain 23 152 2.5E-15 T 14-10-2018 IPR004114 THUMP domain GO:0003723 YP_1175 915ef067e4c9fe9b1b7e40f603f3477a 706 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 306 312 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YP_1175 915ef067e4c9fe9b1b7e40f603f3477a 706 Gene3D G3DSA:3.30.750.80 392 483 2.2E-36 T 14-10-2018 YP_1175 915ef067e4c9fe9b1b7e40f603f3477a 706 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 453 664 1.9E-19 T 14-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 YP_1175 915ef067e4c9fe9b1b7e40f603f3477a 706 Gene3D G3DSA:3.40.50.150 169 372 3.0E-146 T 14-10-2018 YP_1175 915ef067e4c9fe9b1b7e40f603f3477a 706 SUPERFAMILY SSF53335 146 373 3.98E-40 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1175 915ef067e4c9fe9b1b7e40f603f3477a 706 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 4 702 32.241 T 14-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 YP_1175 915ef067e4c9fe9b1b7e40f603f3477a 706 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 195 206 - T 14-10-2018 IPR000241 Putative RNA methylase domain YP_1774 b1c9be1c04083c2a5db2809e8754428b 545 SUPERFAMILY SSF58104 261 535 9.29E-66 T 14-10-2018 YP_1774 b1c9be1c04083c2a5db2809e8754428b 545 SUPERFAMILY SSF55785 42 133 7.33E-25 T 14-10-2018 IPR035965 PAS domain superfamily YP_1774 b1c9be1c04083c2a5db2809e8754428b 545 Gene3D G3DSA:3.30.450.20 37 164 2.7E-23 T 14-10-2018 YP_1774 b1c9be1c04083c2a5db2809e8754428b 545 Pfam PF08447 PAS fold 50 133 4.9E-15 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 YP_1774 b1c9be1c04083c2a5db2809e8754428b 545 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 347 503 9.5E-52 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YP_1774 b1c9be1c04083c2a5db2809e8754428b 545 SMART SM00283 288 535 3.7E-75 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YP_1774 b1c9be1c04083c2a5db2809e8754428b 545 SMART SM00086 99 139 0.0025 T 14-10-2018 IPR001610 PAC motif YP_1774 b1c9be1c04083c2a5db2809e8754428b 545 Gene3D G3DSA:1.10.287.950 235 536 1.3E-78 T 14-10-2018 YP_1774 b1c9be1c04083c2a5db2809e8754428b 545 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 42 133 4.2E-12 T 14-10-2018 IPR000014 PAS domain YP_1774 b1c9be1c04083c2a5db2809e8754428b 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 463 492 2.2E-40 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1774 b1c9be1c04083c2a5db2809e8754428b 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 386 413 2.2E-40 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1774 b1c9be1c04083c2a5db2809e8754428b 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 309 338 2.2E-40 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1774 b1c9be1c04083c2a5db2809e8754428b 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 415 444 2.2E-40 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_2659 270e7298ff8525f770146d480c5a5db4 205 Gene3D G3DSA:1.10.3820.10 24 201 2.0E-40 T 14-10-2018 IPR038266 NapC/NirT cytochrome c superfamily YP_2659 270e7298ff8525f770146d480c5a5db4 205 PIRSF PIRSF000013 6 205 2.3E-109 T 14-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 YP_2659 270e7298ff8525f770146d480c5a5db4 205 SUPERFAMILY SSF48695 22 201 5.22E-64 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily YP_2659 270e7298ff8525f770146d480c5a5db4 205 TIGRFAM TIGR02161 napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 16 199 2.2E-105 T 14-10-2018 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 YP_2659 270e7298ff8525f770146d480c5a5db4 205 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 27 198 3.0E-79 T 14-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal YP_1229 d34a008c7a19fb7d753f105c01624fed 649 Gene3D G3DSA:3.40.50.300 1 258 1.3E-68 T 14-10-2018 YP_1229 d34a008c7a19fb7d753f105c01624fed 649 Pfam PF02687 FtsX-like permease family 554 642 1.0E-10 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 YP_1229 d34a008c7a19fb7d753f105c01624fed 649 Pfam PF00005 ABC transporter 24 172 1.2E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1229 d34a008c7a19fb7d753f105c01624fed 649 SMART SM00382 33 220 2.4E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1229 d34a008c7a19fb7d753f105c01624fed 649 Pfam PF12704 MacB-like periplasmic core domain 273 491 1.7E-36 T 14-10-2018 IPR025857 MacB-like periplasmic core domain YP_1229 d34a008c7a19fb7d753f105c01624fed 649 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1229 d34a008c7a19fb7d753f105c01624fed 649 SUPERFAMILY SSF52540 4 225 2.0E-68 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3478 7fe1dda7b365bfe4ff7ef0363d203507 122 Pfam PF03400 IS1 transposase 2 120 1.4E-46 T 14-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 YP_0562 7d38206f9287b25ac9b17ec19e539a06 175 Pfam PF00719 Inorganic pyrophosphatase 18 173 2.6E-55 T 14-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 YP_0562 7d38206f9287b25ac9b17ec19e539a06 175 SUPERFAMILY SSF50324 3 175 4.45E-67 T 14-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 YP_0562 7d38206f9287b25ac9b17ec19e539a06 175 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 37.024 T 14-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 YP_0562 7d38206f9287b25ac9b17ec19e539a06 175 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 14-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 YP_0562 7d38206f9287b25ac9b17ec19e539a06 175 Gene3D G3DSA:3.90.80.10 2 175 1.4E-70 T 14-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 YP_pMT030 dd12812435c0aa2f7b101b44005dd507 232 SMART SM00382 68 226 7.8E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_pMT030 dd12812435c0aa2f7b101b44005dd507 232 Pfam PF00005 ABC transporter 59 172 7.5E-10 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_pMT030 dd12812435c0aa2f7b101b44005dd507 232 Gene3D G3DSA:3.40.50.300 29 214 2.5E-18 T 14-10-2018 YP_pMT030 dd12812435c0aa2f7b101b44005dd507 232 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 72 85 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YP_pMT030 dd12812435c0aa2f7b101b44005dd507 232 SUPERFAMILY SSF52540 55 208 1.03E-20 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3333 1e22881da2d08e14898ceeebc5c3d62e 148 PIRSF PIRSF006276 1 141 5.7E-54 T 14-10-2018 IPR006015 Universal stress protein A YP_3333 1e22881da2d08e14898ceeebc5c3d62e 148 Pfam PF00582 Universal stress protein family 3 138 7.5E-21 T 14-10-2018 IPR006016 UspA YP_3333 1e22881da2d08e14898ceeebc5c3d62e 148 Gene3D G3DSA:3.40.50.620 2 142 3.7E-51 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_3333 1e22881da2d08e14898ceeebc5c3d62e 148 SUPERFAMILY SSF52402 3 139 1.17E-31 T 14-10-2018 YP_3425 becf6e849c43d818377a54323d523352 1942 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 591 984 3.8E-111 T 14-10-2018 IPR010071 Amino acid adenylation domain YP_3425 becf6e849c43d818377a54323d523352 1942 Pfam PF00975 Thioesterase domain 1655 1753 4.7E-13 T 14-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 YP_3425 becf6e849c43d818377a54323d523352 1942 Gene3D G3DSA:3.30.300.30 1446 1521 3.4E-12 T 14-10-2018 YP_3425 becf6e849c43d818377a54323d523352 1942 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1564 1579 - T 14-10-2018 IPR006162 Phosphopantetheine attachment site YP_3425 becf6e849c43d818377a54323d523352 1942 SUPERFAMILY SSF52777 253 505 8.23E-41 T 14-10-2018 YP_3425 becf6e849c43d818377a54323d523352 1942 SUPERFAMILY SSF53474 1651 1937 8.82E-34 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_3425 becf6e849c43d818377a54323d523352 1942 Pfam PF08242 Methyltransferase domain 1295 1394 1.3E-16 T 14-10-2018 IPR013217 Methyltransferase type 12 YP_3425 becf6e849c43d818377a54323d523352 1942 SUPERFAMILY SSF47336 1537 1611 2.62E-9 T 14-10-2018 IPR036736 ACP-like superfamily YP_3425 becf6e849c43d818377a54323d523352 1942 Pfam PF00501 AMP-binding enzyme 573 960 1.1E-83 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YP_3425 becf6e849c43d818377a54323d523352 1942 Gene3D G3DSA:3.30.559.30 249 513 1.7E-79 T 14-10-2018 YP_3425 becf6e849c43d818377a54323d523352 1942 SUPERFAMILY SSF52777 81 263 7.11E-17 T 14-10-2018 YP_3425 becf6e849c43d818377a54323d523352 1942 Gene3D G3DSA:3.40.50.150 1136 1445 8.9E-45 T 14-10-2018 YP_3425 becf6e849c43d818377a54323d523352 1942 ProSitePatterns PS00455 Putative AMP-binding domain signature. 703 714 - T 14-10-2018 IPR020845 AMP-binding, conserved site YP_3425 becf6e849c43d818377a54323d523352 1942 Pfam PF00550 Phosphopantetheine attachment site 1554 1610 2.6E-4 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain YP_3425 becf6e849c43d818377a54323d523352 1942 SUPERFAMILY SSF53335 1270 1462 3.5E-25 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3425 becf6e849c43d818377a54323d523352 1942 Pfam PF00668 Condensation domain 117 505 6.7E-29 T 14-10-2018 IPR001242 Condensation domain YP_3425 becf6e849c43d818377a54323d523352 1942 SUPERFAMILY SSF56801 531 1525 3.53E-127 T 14-10-2018 YP_3425 becf6e849c43d818377a54323d523352 1942 Gene3D G3DSA:1.10.1200.10 1524 1617 1.7E-14 T 14-10-2018 IPR036736 ACP-like superfamily YP_3425 becf6e849c43d818377a54323d523352 1942 Gene3D G3DSA:3.30.559.10 76 246 8.4E-37 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 YP_3425 becf6e849c43d818377a54323d523352 1942 Gene3D G3DSA:3.40.50.12780 557 952 2.8E-104 T 14-10-2018 YP_3425 becf6e849c43d818377a54323d523352 1942 Gene3D G3DSA:3.30.300.30 953 1036 4.7E-9 T 14-10-2018 YP_3425 becf6e849c43d818377a54323d523352 1942 Gene3D G3DSA:1.10.10.1830 12 65 1.7E-12 T 14-10-2018 YP_0066 5bc3aad8df72deac04cf0c261d1a961f 82 Gene3D G3DSA:3.40.30.10 1 82 2.1E-29 T 14-10-2018 YP_0066 5bc3aad8df72deac04cf0c261d1a961f 82 PRINTS PR00160 Glutaredoxin signature 60 73 2.5E-17 T 14-10-2018 IPR014025 Glutaredoxin subgroup YP_0066 5bc3aad8df72deac04cf0c261d1a961f 82 PRINTS PR00160 Glutaredoxin signature 46 59 2.5E-17 T 14-10-2018 IPR014025 Glutaredoxin subgroup YP_0066 5bc3aad8df72deac04cf0c261d1a961f 82 PRINTS PR00160 Glutaredoxin signature 4 22 2.5E-17 T 14-10-2018 IPR014025 Glutaredoxin subgroup YP_0066 5bc3aad8df72deac04cf0c261d1a961f 82 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 82 7.3E-37 T 14-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 YP_0066 5bc3aad8df72deac04cf0c261d1a961f 82 Pfam PF00462 Glutaredoxin 4 63 5.0E-25 T 14-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 YP_0066 5bc3aad8df72deac04cf0c261d1a961f 82 SUPERFAMILY SSF52833 1 82 1.14E-29 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_0066 5bc3aad8df72deac04cf0c261d1a961f 82 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 14-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 YP_0005 d69260e5fdb4d35963e3e286a48f5b0d 522 Hamap MF_01625 ATPase RavA [ravA]. 1 502 59.812 T 14-10-2018 IPR023671 ATPase RavA GO:0005737|GO:0016887 YP_0005 d69260e5fdb4d35963e3e286a48f5b0d 522 Pfam PF07728 AAA domain (dynein-related subfamily) 41 171 7.9E-24 T 14-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 YP_0005 d69260e5fdb4d35963e3e286a48f5b0d 522 SMART SM00382 38 187 3.1E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0005 d69260e5fdb4d35963e3e286a48f5b0d 522 Gene3D G3DSA:1.20.58.1510 287 492 1.1E-109 T 14-10-2018 YP_0005 d69260e5fdb4d35963e3e286a48f5b0d 522 Gene3D G3DSA:2.40.128.430 331 441 1.1E-109 T 14-10-2018 YP_0005 d69260e5fdb4d35963e3e286a48f5b0d 522 Gene3D G3DSA:3.40.50.300 1 221 1.3E-61 T 14-10-2018 YP_0005 d69260e5fdb4d35963e3e286a48f5b0d 522 Pfam PF12592 Protein of unknown function (DUF3763) 444 496 1.9E-19 T 14-10-2018 IPR022547 ATPase, RavA, C-terminal GO:0042626 YP_0005 d69260e5fdb4d35963e3e286a48f5b0d 522 Gene3D G3DSA:1.10.8.300 222 285 1.2E-27 T 14-10-2018 YP_0005 d69260e5fdb4d35963e3e286a48f5b0d 522 SUPERFAMILY SSF52540 21 287 9.02E-20 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0653 6d3b1670648edf151bb2419bd7b8bd10 243 Pfam PF13525 Outer membrane lipoprotein 28 236 2.3E-84 T 14-10-2018 IPR039565 Outer membrane lipoprotein BamD-like YP_0653 6d3b1670648edf151bb2419bd7b8bd10 243 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 5 241 1.2E-88 T 14-10-2018 IPR017689 Outer membrane protein assembly factor BamD YP_0653 6d3b1670648edf151bb2419bd7b8bd10 243 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 4 242 38.778 T 14-10-2018 IPR017689 Outer membrane protein assembly factor BamD YP_0653 6d3b1670648edf151bb2419bd7b8bd10 243 SUPERFAMILY SSF48452 27 119 1.23E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_0653 6d3b1670648edf151bb2419bd7b8bd10 243 Gene3D G3DSA:1.25.40.10 29 243 3.1E-62 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_3671 5dfe604ef5df038d1288f3cd1e1010e9 739 SUPERFAMILY SSF141571 506 605 4.19E-12 T 14-10-2018 YP_3671 5dfe604ef5df038d1288f3cd1e1010e9 739 Gene3D G3DSA:2.160.20.100 416 490 3.2E-13 T 14-10-2018 YP_3671 5dfe604ef5df038d1288f3cd1e1010e9 739 Gene3D G3DSA:2.160.20.100 491 607 7.0E-15 T 14-10-2018 YP_3671 5dfe604ef5df038d1288f3cd1e1010e9 739 Pfam PF09937 Uncharacterized protein conserved in bacteria (DUF2169) 9 285 2.5E-30 T 14-10-2018 IPR018683 Domain of unknown function DUF2169 YP_3671 5dfe604ef5df038d1288f3cd1e1010e9 739 SUPERFAMILY SSF141571 424 534 3.01E-21 T 14-10-2018 YP_3671 5dfe604ef5df038d1288f3cd1e1010e9 739 Gene3D G3DSA:2.160.20.100 608 723 1.9E-18 T 14-10-2018 YP_3671 5dfe604ef5df038d1288f3cd1e1010e9 739 Pfam PF13599 Pentapeptide repeats (9 copies) 637 711 2.1E-15 T 14-10-2018 IPR001646 Pentapeptide repeat YP_3671 5dfe604ef5df038d1288f3cd1e1010e9 739 Pfam PF13599 Pentapeptide repeats (9 copies) 424 494 2.7E-12 T 14-10-2018 IPR001646 Pentapeptide repeat YP_3671 5dfe604ef5df038d1288f3cd1e1010e9 739 Pfam PF13599 Pentapeptide repeats (9 copies) 546 605 2.7E-6 T 14-10-2018 IPR001646 Pentapeptide repeat YP_3671 5dfe604ef5df038d1288f3cd1e1010e9 739 SUPERFAMILY SSF141571 611 709 2.88E-19 T 14-10-2018 YP_2117 cb9d631d849e7bf5ec9056e333359136 137 Pfam PF03891 Domain of unknown function (DUF333) 86 133 2.5E-20 T 14-10-2018 IPR005590 Protein of unknown function DUF333 YP_0558 0c67cb0520820538d8b9fa8b14e9d1db 212 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 45 199 7.9E-68 T 14-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 YP_0558 0c67cb0520820538d8b9fa8b14e9d1db 212 SUPERFAMILY SSF55068 8 208 7.72E-81 T 14-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 YP_0558 0c67cb0520820538d8b9fa8b14e9d1db 212 Pfam PF01625 Peptide methionine sulfoxide reductase 46 199 8.3E-66 T 14-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 YP_0558 0c67cb0520820538d8b9fa8b14e9d1db 212 Gene3D G3DSA:3.30.1060.10 4 212 1.4E-86 T 14-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 YP_0558 0c67cb0520820538d8b9fa8b14e9d1db 212 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 43 205 38.44 T 14-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 YP_0353 d6171bd7c2f34ac5790a8bcc4ff156bd 498 SUPERFAMILY SSF53067 4 255 1.02E-56 T 14-10-2018 YP_0353 d6171bd7c2f34ac5790a8bcc4ff156bd 498 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 255 2.4E-64 T 14-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YP_0353 d6171bd7c2f34ac5790a8bcc4ff156bd 498 Gene3D G3DSA:3.30.420.40 249 498 6.7E-45 T 14-10-2018 YP_0353 d6171bd7c2f34ac5790a8bcc4ff156bd 498 PIRSF PIRSF000538 2 498 4.3E-76 T 14-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YP_0353 d6171bd7c2f34ac5790a8bcc4ff156bd 498 SUPERFAMILY SSF53067 259 496 1.53E-40 T 14-10-2018 YP_0353 d6171bd7c2f34ac5790a8bcc4ff156bd 498 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 266 448 1.2E-16 T 14-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YP_0353 d6171bd7c2f34ac5790a8bcc4ff156bd 498 Gene3D G3DSA:3.30.420.40 1 247 6.7E-66 T 14-10-2018 YP_1991 d9ba8f11853742ea1007f1c739ca42e9 98 Pfam PF03795 YCII-related domain 1 95 3.1E-28 T 14-10-2018 IPR005545 YCII-related YP_1991 d9ba8f11853742ea1007f1c739ca42e9 98 Gene3D G3DSA:3.30.70.1060 1 98 2.4E-38 T 14-10-2018 YP_1991 d9ba8f11853742ea1007f1c739ca42e9 98 SUPERFAMILY SSF54909 1 98 2.68E-31 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel YP_1736 203ee455215c895b441108876f4efd81 267 Gene3D G3DSA:2.60.40.10 170 267 4.1E-14 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_1736 203ee455215c895b441108876f4efd81 267 SUPERFAMILY SSF49354 34 166 3.14E-36 T 14-10-2018 IPR008962 PapD-like superfamily YP_1736 203ee455215c895b441108876f4efd81 267 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 192 258 8.0E-12 T 14-10-2018 IPR016148 Pili assembly chaperone, C-terminal YP_1736 203ee455215c895b441108876f4efd81 267 Gene3D G3DSA:2.60.40.10 42 166 4.0E-38 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_1736 203ee455215c895b441108876f4efd81 267 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 39 166 2.5E-39 T 14-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YP_1736 203ee455215c895b441108876f4efd81 267 PRINTS PR00969 Pili chaperone signature 40 49 3.4E-30 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1736 203ee455215c895b441108876f4efd81 267 PRINTS PR00969 Pili chaperone signature 187 202 3.4E-30 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1736 203ee455215c895b441108876f4efd81 267 PRINTS PR00969 Pili chaperone signature 121 138 3.4E-30 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1736 203ee455215c895b441108876f4efd81 267 PRINTS PR00969 Pili chaperone signature 148 163 3.4E-30 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1736 203ee455215c895b441108876f4efd81 267 PRINTS PR00969 Pili chaperone signature 91 112 3.4E-30 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1736 203ee455215c895b441108876f4efd81 267 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 120 137 - T 14-10-2018 IPR018046 Pili assembly chaperone, conserved site YP_1736 203ee455215c895b441108876f4efd81 267 SUPERFAMILY SSF49584 160 262 1.07E-11 T 14-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_0618 edbfae171ce78f907c9f102186fc3f22 250 TIGRFAM TIGR03307 PhnP: phosphonate metabolism protein PhnP 1 247 2.7E-130 T 14-10-2018 IPR017693 Phosphonate metabolism protein PhnP GO:0008081|GO:0019700 KEGG: 00440+3.1.4.55|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YP_0618 edbfae171ce78f907c9f102186fc3f22 250 SMART SM00849 37 223 9.4E-5 T 14-10-2018 IPR001279 Metallo-beta-lactamase YP_0618 edbfae171ce78f907c9f102186fc3f22 250 SUPERFAMILY SSF56281 1 249 3.66E-38 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_0618 edbfae171ce78f907c9f102186fc3f22 250 Gene3D G3DSA:3.60.15.10 1 249 1.1E-68 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_0618 edbfae171ce78f907c9f102186fc3f22 250 Pfam PF12706 Beta-lactamase superfamily domain 50 220 1.7E-17 T 14-10-2018 IPR001279 Metallo-beta-lactamase YP_1421 f6a260ac07f7979374c0a8dd3ba20a4b 629 Pfam PF04183 IucA / IucC family 174 423 4.0E-77 T 14-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 YP_1421 f6a260ac07f7979374c0a8dd3ba20a4b 629 Gene3D G3DSA:1.10.510.40 412 619 6.7E-71 T 14-10-2018 YP_1421 f6a260ac07f7979374c0a8dd3ba20a4b 629 Gene3D G3DSA:1.10.274.90 21 163 1.3E-44 T 14-10-2018 YP_1421 f6a260ac07f7979374c0a8dd3ba20a4b 629 Pfam PF06276 Ferric iron reductase FhuF-like transporter 444 601 5.6E-41 T 14-10-2018 IPR022770 Ferric iron reductase FhuF domain YP_1468 f1cb03d8e5bfcc94f86d5782b1e0a37e 246 SUPERFAMILY SSF56214 130 205 2.62E-14 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 YP_1468 f1cb03d8e5bfcc94f86d5782b1e0a37e 246 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 131 201 1.8E-11 T 14-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 YP_1468 f1cb03d8e5bfcc94f86d5782b1e0a37e 246 Gene3D G3DSA:3.90.470.20 130 241 2.7E-5 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 YP_1468 f1cb03d8e5bfcc94f86d5782b1e0a37e 246 PRINTS PR01399 Enterobactin synthetase component D signature 60 80 2.1E-7 T 14-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 YP_1468 f1cb03d8e5bfcc94f86d5782b1e0a37e 246 PRINTS PR01399 Enterobactin synthetase component D signature 90 108 2.1E-7 T 14-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 YP_2819 d71e284dc889626b8f72a1a4c1a3ebf9 251 SUPERFAMILY SSF88723 4 159 1.23E-40 T 14-10-2018 IPR029060 PIN-like domain superfamily YP_2819 d71e284dc889626b8f72a1a4c1a3ebf9 251 Gene3D G3DSA:1.10.150.20 162 251 4.4E-27 T 14-10-2018 YP_2819 d71e284dc889626b8f72a1a4c1a3ebf9 251 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 5 159 1.5E-31 T 14-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 YP_2819 d71e284dc889626b8f72a1a4c1a3ebf9 251 SMART SM00475 3 250 4.7E-92 T 14-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 YP_2819 d71e284dc889626b8f72a1a4c1a3ebf9 251 Gene3D G3DSA:3.40.50.1010 1 161 3.0E-59 T 14-10-2018 YP_2819 d71e284dc889626b8f72a1a4c1a3ebf9 251 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 160 250 8.5E-24 T 14-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 YP_2819 d71e284dc889626b8f72a1a4c1a3ebf9 251 SUPERFAMILY SSF47807 160 241 4.64E-21 T 14-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YP_2819 d71e284dc889626b8f72a1a4c1a3ebf9 251 SMART SM00279 162 197 2.1E-9 T 14-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 YP_2819 d71e284dc889626b8f72a1a4c1a3ebf9 251 Hamap MF_01192 Flap endonuclease Xni [xni]. 2 251 44.192 T 14-10-2018 IPR022895 Flap endonuclease Xni GO:0048256 YP_3513 41fd499b90841d9abb5743182ad28b98 659 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 28 658 42.642 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YP_3513 41fd499b90841d9abb5743182ad28b98 659 Gene3D G3DSA:1.20.58.930 387 482 6.5E-233 T 14-10-2018 YP_3513 41fd499b90841d9abb5743182ad28b98 659 PIRSF PIRSF001336 17 659 4.7E-254 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YP_3513 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 514 539 1.0E-73 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YP_3513 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 93 108 1.0E-73 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YP_3513 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 567 588 1.0E-73 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YP_3513 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 221 243 1.0E-73 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YP_3513 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 348 365 1.0E-73 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YP_3513 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 489 510 1.0E-73 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YP_3513 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 197 218 1.0E-73 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YP_3513 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 117 131 1.0E-73 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YP_3513 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 171 186 1.0E-73 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YP_3513 41fd499b90841d9abb5743182ad28b98 659 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 302 315 - T 14-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YP_3513 41fd499b90841d9abb5743182ad28b98 659 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 125 143 - T 14-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YP_3513 41fd499b90841d9abb5743182ad28b98 659 Gene3D G3DSA:3.20.20.10 94 370 6.5E-233 T 14-10-2018 IPR029066 PLP-binding barrel YP_3513 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 264 277 8.7E-19 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YP_3513 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 125 143 8.7E-19 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YP_3513 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 358 377 8.7E-19 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YP_3513 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 147 159 8.7E-19 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YP_3513 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 567 580 8.7E-19 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YP_3513 41fd499b90841d9abb5743182ad28b98 659 SUPERFAMILY SSF51419 93 370 1.29E-67 T 14-10-2018 IPR029066 PLP-binding barrel YP_3513 41fd499b90841d9abb5743182ad28b98 659 TIGRFAM TIGR01273 speA: arginine decarboxylase 32 657 1.1E-269 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YP_3513 41fd499b90841d9abb5743182ad28b98 659 Gene3D G3DSA:2.40.37.10 39 591 6.5E-233 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 YP_3513 41fd499b90841d9abb5743182ad28b98 659 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 101 368 1.2E-67 T 14-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 YP_3513 41fd499b90841d9abb5743182ad28b98 659 SUPERFAMILY SSF50621 482 588 1.57E-8 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 YP_2399 b2d2a0d6dfebbcf0f55f051a4e7a79df 336 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 316 5.1E-35 T 14-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YP_2399 b2d2a0d6dfebbcf0f55f051a4e7a79df 336 SUPERFAMILY SSF51735 5 157 9.24E-44 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2399 b2d2a0d6dfebbcf0f55f051a4e7a79df 336 Gene3D G3DSA:3.40.50.720 7 328 2.6E-110 T 14-10-2018 YP_2399 b2d2a0d6dfebbcf0f55f051a4e7a79df 336 PIRSF PIRSF000148 4 336 6.0E-98 T 14-10-2018 YP_2399 b2d2a0d6dfebbcf0f55f051a4e7a79df 336 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 119 2.3E-25 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 YP_2399 b2d2a0d6dfebbcf0f55f051a4e7a79df 336 SUPERFAMILY SSF55347 132 318 5.06E-53 T 14-10-2018 YP_2399 b2d2a0d6dfebbcf0f55f051a4e7a79df 336 Gene3D G3DSA:3.30.360.10 130 314 2.6E-110 T 14-10-2018 YP_2399 b2d2a0d6dfebbcf0f55f051a4e7a79df 336 SMART SM00859 6 121 1.8E-34 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 YP_3754 54e7ce9d401f8218bf3b4b43805e2203 347 Gene3D G3DSA:3.40.50.150 159 339 1.8E-45 T 14-10-2018 YP_3754 54e7ce9d401f8218bf3b4b43805e2203 347 Pfam PF05175 Methyltransferase small domain 167 333 2.4E-57 T 14-10-2018 IPR007848 Methyltransferase small domain GO:0008168 YP_3754 54e7ce9d401f8218bf3b4b43805e2203 347 Pfam PF08468 Methyltransferase small domain N-terminal 8 162 4.7E-58 T 14-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 YP_3754 54e7ce9d401f8218bf3b4b43805e2203 347 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 265 271 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YP_3754 54e7ce9d401f8218bf3b4b43805e2203 347 Gene3D G3DSA:3.40.50.150 1 158 9.0E-59 T 14-10-2018 YP_3754 54e7ce9d401f8218bf3b4b43805e2203 347 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 4 336 45.019 T 14-10-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 YP_3754 54e7ce9d401f8218bf3b4b43805e2203 347 SUPERFAMILY SSF53335 154 315 3.29E-27 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0623 9e3bc05c2811e4d6bc318e0a9c0fb163 285 TIGRFAM TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK 31 283 2.2E-119 T 14-10-2018 IPR012700 Phosphonate C-P lyase system, PhnK YP_0623 9e3bc05c2811e4d6bc318e0a9c0fb163 285 Pfam PF00005 ABC transporter 50 206 5.3E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0623 9e3bc05c2811e4d6bc318e0a9c0fb163 285 SUPERFAMILY SSF52540 26 281 7.68E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0623 9e3bc05c2811e4d6bc318e0a9c0fb163 285 ProSitePatterns PS00211 ABC transporters family signature. 179 193 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0623 9e3bc05c2811e4d6bc318e0a9c0fb163 285 Gene3D G3DSA:3.40.50.300 31 285 1.1E-67 T 14-10-2018 YP_0623 9e3bc05c2811e4d6bc318e0a9c0fb163 285 PIRSF PIRSF037116 22 285 1.1E-141 T 14-10-2018 IPR012700 Phosphonate C-P lyase system, PhnK YP_0623 9e3bc05c2811e4d6bc318e0a9c0fb163 285 SMART SM00382 58 256 3.3E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0733 c3edf8e2445c179dcb8c1cbb33a63c51 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 5.7E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0733 c3edf8e2445c179dcb8c1cbb33a63c51 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 5.7E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0733 c3edf8e2445c179dcb8c1cbb33a63c51 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 5.7E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0733 c3edf8e2445c179dcb8c1cbb33a63c51 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 5.7E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0733 c3edf8e2445c179dcb8c1cbb33a63c51 226 Pfam PF00106 short chain dehydrogenase 7 187 3.4E-29 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0733 c3edf8e2445c179dcb8c1cbb33a63c51 226 Gene3D G3DSA:3.40.50.720 2 226 3.7E-56 T 14-10-2018 YP_0733 c3edf8e2445c179dcb8c1cbb33a63c51 226 SUPERFAMILY SSF51735 6 226 6.47E-63 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2832 aa2e5fca5b9da4ab3bc87246f271beb1 1037 PIRSF PIRSF034515 5 1037 0.0 T 14-10-2018 IPR024200 Chondroitin sulfate ABC endolyase GO:0005975|GO:0034000 YP_2832 aa2e5fca5b9da4ab3bc87246f271beb1 1037 SUPERFAMILY SSF49785 34 244 2.3E-82 T 14-10-2018 IPR008979 Galactose-binding-like domain superfamily YP_2832 aa2e5fca5b9da4ab3bc87246f271beb1 1037 Pfam PF09093 Lyase, catalytic 257 619 9.4E-134 T 14-10-2018 IPR015177 Lyase, catalytic YP_2832 aa2e5fca5b9da4ab3bc87246f271beb1 1037 SUPERFAMILY SSF74650 635 909 1.2E-84 T 14-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 YP_2832 aa2e5fca5b9da4ab3bc87246f271beb1 1037 Gene3D G3DSA:1.50.10.100 246 634 2.9E-109 T 14-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 YP_2832 aa2e5fca5b9da4ab3bc87246f271beb1 1037 Gene3D G3DSA:2.70.98.10 635 913 9.4E-99 T 14-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 YP_2832 aa2e5fca5b9da4ab3bc87246f271beb1 1037 Gene3D G3DSA:2.60.120.430 33 245 2.3E-64 T 14-10-2018 YP_2832 aa2e5fca5b9da4ab3bc87246f271beb1 1037 Pfam PF02278 Polysaccharide lyase family 8, super-sandwich domain 641 893 3.0E-33 T 14-10-2018 IPR003159 Polysaccharide lyase family 8, central domain GO:0005576|GO:0016829 YP_2832 aa2e5fca5b9da4ab3bc87246f271beb1 1037 Gene3D G3DSA:2.60.220.10 915 1037 5.8E-38 T 14-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 YP_2832 aa2e5fca5b9da4ab3bc87246f271beb1 1037 SUPERFAMILY SSF48230 247 633 6.41E-154 T 14-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 YP_2832 aa2e5fca5b9da4ab3bc87246f271beb1 1037 Pfam PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain 916 977 7.6E-5 T 14-10-2018 IPR004103 Polysaccharide lyase family 8, C-terminal GO:0005576|GO:0016829 YP_2832 aa2e5fca5b9da4ab3bc87246f271beb1 1037 SUPERFAMILY SSF49863 915 1036 1.61E-41 T 14-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 YP_2832 aa2e5fca5b9da4ab3bc87246f271beb1 1037 Pfam PF09092 Lyase, N terminal 47 242 1.9E-59 T 14-10-2018 IPR015176 Lyase, N-terminal YP_0268 32c460a010e888600e12e20e415e1470 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 6.2E-41 T 14-10-2018 YP_0268 32c460a010e888600e12e20e415e1470 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 294 316 6.2E-41 T 14-10-2018 YP_0268 32c460a010e888600e12e20e415e1470 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 6.2E-41 T 14-10-2018 YP_0268 32c460a010e888600e12e20e415e1470 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 281 6.2E-41 T 14-10-2018 YP_0268 32c460a010e888600e12e20e415e1470 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 6.2E-41 T 14-10-2018 YP_0268 32c460a010e888600e12e20e415e1470 475 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 329 1.4E-62 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YP_0268 32c460a010e888600e12e20e415e1470 475 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 348 456 1.8E-35 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 YP_0268 32c460a010e888600e12e20e415e1470 475 SUPERFAMILY SSF51905 1 338 5.19E-58 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0268 32c460a010e888600e12e20e415e1470 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 1.2E-68 T 14-10-2018 YP_0268 32c460a010e888600e12e20e415e1470 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 1.2E-68 T 14-10-2018 YP_0268 32c460a010e888600e12e20e415e1470 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 266 280 1.2E-68 T 14-10-2018 YP_0268 32c460a010e888600e12e20e415e1470 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 309 316 1.2E-68 T 14-10-2018 YP_0268 32c460a010e888600e12e20e415e1470 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 1.2E-68 T 14-10-2018 YP_0268 32c460a010e888600e12e20e415e1470 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 344 365 1.2E-68 T 14-10-2018 YP_0268 32c460a010e888600e12e20e415e1470 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 409 424 1.2E-68 T 14-10-2018 YP_0268 32c460a010e888600e12e20e415e1470 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 42 57 1.2E-68 T 14-10-2018 YP_0268 32c460a010e888600e12e20e415e1470 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 431 451 1.2E-68 T 14-10-2018 YP_0268 32c460a010e888600e12e20e415e1470 475 Gene3D G3DSA:3.30.390.30 347 468 1.1E-45 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YP_0268 32c460a010e888600e12e20e415e1470 475 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 43 53 - T 14-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 YP_0268 32c460a010e888600e12e20e415e1470 475 SUPERFAMILY SSF55424 344 467 5.84E-39 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YP_0268 32c460a010e888600e12e20e415e1470 475 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 8 459 5.0E-149 T 14-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 YP_0268 32c460a010e888600e12e20e415e1470 475 Gene3D G3DSA:3.50.50.60 151 272 1.9E-124 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0268 32c460a010e888600e12e20e415e1470 475 Gene3D G3DSA:3.50.50.60 10 333 1.9E-124 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0268 32c460a010e888600e12e20e415e1470 475 PIRSF PIRSF000350 1 469 1.7E-85 T 14-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 YP_3115 3f0db8b79c3aa21e2123b26b5ffd87e7 181 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 9 180 1.1E-70 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 YP_3115 3f0db8b79c3aa21e2123b26b5ffd87e7 181 SMART SM00738 6 115 2.0E-50 T 14-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YP_3115 3f0db8b79c3aa21e2123b26b5ffd87e7 181 Pfam PF02357 Transcription termination factor nusG 7 112 2.1E-27 T 14-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YP_3115 3f0db8b79c3aa21e2123b26b5ffd87e7 181 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 6 181 24.616 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 YP_3115 3f0db8b79c3aa21e2123b26b5ffd87e7 181 Gene3D G3DSA:3.30.70.940 1 121 6.5E-48 T 14-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YP_3115 3f0db8b79c3aa21e2123b26b5ffd87e7 181 Gene3D G3DSA:2.30.30.30 122 180 2.3E-26 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 YP_3115 3f0db8b79c3aa21e2123b26b5ffd87e7 181 ProSitePatterns PS01014 Transcription termination factor nusG signature. 164 173 - T 14-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site YP_3115 3f0db8b79c3aa21e2123b26b5ffd87e7 181 SUPERFAMILY SSF50104 125 180 1.15E-19 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily YP_3115 3f0db8b79c3aa21e2123b26b5ffd87e7 181 Pfam PF00467 KOW motif 130 162 9.5E-8 T 14-10-2018 IPR005824 KOW YP_3115 3f0db8b79c3aa21e2123b26b5ffd87e7 181 SMART SM00739 127 154 2.0E-6 T 14-10-2018 IPR005824 KOW YP_3115 3f0db8b79c3aa21e2123b26b5ffd87e7 181 PRINTS PR00338 Transcription termination factor NUSG signature 61 73 1.9E-21 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 YP_3115 3f0db8b79c3aa21e2123b26b5ffd87e7 181 PRINTS PR00338 Transcription termination factor NUSG signature 139 154 1.9E-21 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 YP_3115 3f0db8b79c3aa21e2123b26b5ffd87e7 181 PRINTS PR00338 Transcription termination factor NUSG signature 157 173 1.9E-21 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 YP_3115 3f0db8b79c3aa21e2123b26b5ffd87e7 181 SUPERFAMILY SSF82679 6 116 3.4E-40 T 14-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YP_1069 bbd501b2f416575264f8ed276e9ca394 106 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 19 98 1.1E-16 T 14-10-2018 IPR014057 Uncharacterized protein HI1420 YP_1069 bbd501b2f416575264f8ed276e9ca394 106 SUPERFAMILY SSF47413 42 102 7.17E-7 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_1069 bbd501b2f416575264f8ed276e9ca394 106 Gene3D G3DSA:1.10.260.40 45 102 4.0E-6 T 14-10-2018 YP_1413 00c788710fbb8725387e7c83134ed689 226 SUPERFAMILY SSF52540 9 218 7.63E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1413 00c788710fbb8725387e7c83134ed689 226 PRINTS PR00988 Uridine kinase signature 170 181 5.4E-38 T 14-10-2018 YP_1413 00c788710fbb8725387e7c83134ed689 226 PRINTS PR00988 Uridine kinase signature 21 38 5.4E-38 T 14-10-2018 YP_1413 00c788710fbb8725387e7c83134ed689 226 PRINTS PR00988 Uridine kinase signature 192 205 5.4E-38 T 14-10-2018 YP_1413 00c788710fbb8725387e7c83134ed689 226 PRINTS PR00988 Uridine kinase signature 156 166 5.4E-38 T 14-10-2018 YP_1413 00c788710fbb8725387e7c83134ed689 226 PRINTS PR00988 Uridine kinase signature 55 66 5.4E-38 T 14-10-2018 YP_1413 00c788710fbb8725387e7c83134ed689 226 PRINTS PR00988 Uridine kinase signature 100 115 5.4E-38 T 14-10-2018 YP_1413 00c788710fbb8725387e7c83134ed689 226 Gene3D G3DSA:3.40.50.300 17 226 8.6E-62 T 14-10-2018 YP_1413 00c788710fbb8725387e7c83134ed689 226 Hamap MF_00551 Uridine kinase [udk]. 18 226 41.293 T 14-10-2018 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 YP_1413 00c788710fbb8725387e7c83134ed689 226 TIGRFAM TIGR00235 udk: uridine kinase 19 226 5.3E-96 T 14-10-2018 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|Reactome: R-HSA-73614 YP_1413 00c788710fbb8725387e7c83134ed689 226 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 23 212 2.0E-43 T 14-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 YP_1728 7bbec0af1547f46428c9fd2d89e4a6bb 165 SUPERFAMILY SSF55781 2 151 1.32E-39 T 14-10-2018 YP_1728 7bbec0af1547f46428c9fd2d89e4a6bb 165 Pfam PF13185 GAF domain 39 146 2.2E-9 T 14-10-2018 IPR003018 GAF domain GO:0005515 YP_1728 7bbec0af1547f46428c9fd2d89e4a6bb 165 Gene3D G3DSA:3.30.450.40 1 165 4.1E-65 T 14-10-2018 IPR029016 GAF-like domain superfamily YP_0828 83a55277ec6b04e9d0387a78efd51ea4 247 SUPERFAMILY SSF53448 2 203 7.41E-50 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_0828 83a55277ec6b04e9d0387a78efd51ea4 247 Pfam PF00535 Glycosyl transferase family 2 4 126 2.0E-24 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 YP_0828 83a55277ec6b04e9d0387a78efd51ea4 247 Gene3D G3DSA:3.90.550.10 1 228 6.1E-52 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_2841 50a79615535929ebc9be99f2d434c8af 503 Gene3D G3DSA:3.30.450.90 88 221 4.0E-49 T 14-10-2018 YP_2841 50a79615535929ebc9be99f2d434c8af 503 Gene3D G3DSA:3.40.50.300 222 502 7.2E-106 T 14-10-2018 YP_2841 50a79615535929ebc9be99f2d434c8af 503 SUPERFAMILY SSF52540 105 494 2.53E-95 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2841 50a79615535929ebc9be99f2d434c8af 503 SUPERFAMILY SSF160246 11 75 1.07E-11 T 14-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily YP_2841 50a79615535929ebc9be99f2d434c8af 503 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 13 494 6.4E-191 T 14-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 YP_2841 50a79615535929ebc9be99f2d434c8af 503 SMART SM00382 249 367 0.0027 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2841 50a79615535929ebc9be99f2d434c8af 503 Pfam PF00437 Type II/IV secretion system protein 122 388 2.9E-84 T 14-10-2018 IPR001482 Type II/IV secretion system protein YP_2841 50a79615535929ebc9be99f2d434c8af 503 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 316 330 - T 14-10-2018 IPR001482 Type II/IV secretion system protein YP_2841 50a79615535929ebc9be99f2d434c8af 503 Gene3D G3DSA:3.30.300.160 4 87 1.7E-7 T 14-10-2018 YP_pMT084 f2985fcc795ae6c78dd001478608e53a 269 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 121 138 - T 14-10-2018 IPR018046 Pili assembly chaperone, conserved site YP_pMT084 f2985fcc795ae6c78dd001478608e53a 269 Gene3D G3DSA:2.60.40.10 48 179 3.2E-49 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_pMT084 f2985fcc795ae6c78dd001478608e53a 269 PRINTS PR00969 Pili chaperone signature 94 115 6.2E-34 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_pMT084 f2985fcc795ae6c78dd001478608e53a 269 PRINTS PR00969 Pili chaperone signature 163 178 6.2E-34 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_pMT084 f2985fcc795ae6c78dd001478608e53a 269 PRINTS PR00969 Pili chaperone signature 122 139 6.2E-34 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_pMT084 f2985fcc795ae6c78dd001478608e53a 269 PRINTS PR00969 Pili chaperone signature 48 57 6.2E-34 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_pMT084 f2985fcc795ae6c78dd001478608e53a 269 PRINTS PR00969 Pili chaperone signature 198 213 6.2E-34 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_pMT084 f2985fcc795ae6c78dd001478608e53a 269 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 204 260 4.7E-12 T 14-10-2018 IPR016148 Pili assembly chaperone, C-terminal YP_pMT084 f2985fcc795ae6c78dd001478608e53a 269 SUPERFAMILY SSF49354 45 181 1.86E-40 T 14-10-2018 IPR008962 PapD-like superfamily YP_pMT084 f2985fcc795ae6c78dd001478608e53a 269 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 47 182 3.8E-39 T 14-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YP_pMT084 f2985fcc795ae6c78dd001478608e53a 269 Gene3D G3DSA:2.60.40.10 183 264 1.5E-29 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_pMT084 f2985fcc795ae6c78dd001478608e53a 269 SUPERFAMILY SSF49584 176 264 1.11E-20 T 14-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_0990 229da0f9f9a2dffcfe1c8dbb327f0fac 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 71 5.3E-20 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_0990 229da0f9f9a2dffcfe1c8dbb327f0fac 297 Pfam PF03466 LysR substrate binding domain 97 295 1.5E-26 T 14-10-2018 IPR005119 LysR, substrate-binding YP_0990 229da0f9f9a2dffcfe1c8dbb327f0fac 297 Gene3D G3DSA:1.10.10.10 6 92 1.5E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0990 229da0f9f9a2dffcfe1c8dbb327f0fac 297 Gene3D G3DSA:3.40.190.10 103 294 2.3E-38 T 14-10-2018 YP_0990 229da0f9f9a2dffcfe1c8dbb327f0fac 297 SUPERFAMILY SSF53850 99 295 6.52E-26 T 14-10-2018 YP_0990 229da0f9f9a2dffcfe1c8dbb327f0fac 297 SUPERFAMILY SSF46785 9 90 9.98E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0990 229da0f9f9a2dffcfe1c8dbb327f0fac 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 27 38 4.8E-10 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_0990 229da0f9f9a2dffcfe1c8dbb327f0fac 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 48 59 4.8E-10 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_0990 229da0f9f9a2dffcfe1c8dbb327f0fac 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 48 4.8E-10 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_0990 229da0f9f9a2dffcfe1c8dbb327f0fac 297 Gene3D G3DSA:3.40.190.10 174 276 2.3E-38 T 14-10-2018 YP_0789 9ff7387ada81e59bc97fa33b9fc6769d 431 TIGRFAM TIGR00836 amt: ammonium transporter 34 429 1.5E-136 T 14-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 YP_0789 9ff7387ada81e59bc97fa33b9fc6769d 431 Pfam PF00909 Ammonium Transporter Family 36 429 3.8E-126 T 14-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 YP_0789 9ff7387ada81e59bc97fa33b9fc6769d 431 SUPERFAMILY SSF111352 30 410 1.29E-127 T 14-10-2018 YP_0789 9ff7387ada81e59bc97fa33b9fc6769d 431 Gene3D G3DSA:1.10.3430.10 26 410 1.3E-145 T 14-10-2018 IPR029020 Ammonium/urea transporter YP_0789 9ff7387ada81e59bc97fa33b9fc6769d 431 ProSitePatterns PS01219 Ammonium transporters signature. 185 210 - T 14-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 YP_pCD31 bd809d954f2aaa7f5d4e7aec298b563d 607 Pfam PF03958 Bacterial type II/III secretion system short domain 185 280 3.1E-19 T 14-10-2018 IPR005644 NolW-like YP_pCD31 bd809d954f2aaa7f5d4e7aec298b563d 607 Gene3D G3DSA:3.30.1370.120 108 179 8.3E-16 T 14-10-2018 IPR038591 NolW-like superfamily YP_pCD31 bd809d954f2aaa7f5d4e7aec298b563d 607 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 455 488 - T 14-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 YP_pCD31 bd809d954f2aaa7f5d4e7aec298b563d 607 Gene3D G3DSA:3.55.50.30 23 107 4.7E-26 T 14-10-2018 YP_pCD31 bd809d954f2aaa7f5d4e7aec298b563d 607 TIGRFAM TIGR02516 type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family 36 510 5.6E-185 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YP_pCD31 bd809d954f2aaa7f5d4e7aec298b563d 607 Pfam PF00263 Bacterial type II and III secretion system protein 350 510 1.2E-40 T 14-10-2018 IPR004846 Type II/III secretion system GO:0009306 YP_pCD31 bd809d954f2aaa7f5d4e7aec298b563d 607 Gene3D G3DSA:3.30.1370.120 182 281 2.3E-11 T 14-10-2018 IPR038591 NolW-like superfamily YP_pCD31 bd809d954f2aaa7f5d4e7aec298b563d 607 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 196 213 1.3E-37 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YP_pCD31 bd809d954f2aaa7f5d4e7aec298b563d 607 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 397 412 1.3E-37 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YP_pCD31 bd809d954f2aaa7f5d4e7aec298b563d 607 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 363 382 1.3E-37 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YP_pCD31 bd809d954f2aaa7f5d4e7aec298b563d 607 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 283 303 1.3E-37 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YP_pCD31 bd809d954f2aaa7f5d4e7aec298b563d 607 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 488 507 1.3E-37 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YP_0389 5325e7c52a64d04049c44637bdc10837 453 SUPERFAMILY SSF47446 298 431 8.5E-46 T 14-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 YP_0389 5325e7c52a64d04049c44637bdc10837 453 Gene3D G3DSA:1.10.260.30 328 450 1.3E-45 T 14-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 YP_0389 5325e7c52a64d04049c44637bdc10837 453 Gene3D G3DSA:3.40.50.300 90 285 1.3E-124 T 14-10-2018 YP_0389 5325e7c52a64d04049c44637bdc10837 453 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 2.4E-179 T 14-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 YP_0389 5325e7c52a64d04049c44637bdc10837 453 SMART SM00963 1 86 1.9E-37 T 14-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YP_0389 5325e7c52a64d04049c44637bdc10837 453 SUPERFAMILY SSF52540 42 354 3.37E-57 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0389 5325e7c52a64d04049c44637bdc10837 453 Gene3D G3DSA:1.20.120.140 4 305 1.3E-124 T 14-10-2018 YP_0389 5325e7c52a64d04049c44637bdc10837 453 SMART SM00962 100 296 6.6E-117 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YP_0389 5325e7c52a64d04049c44637bdc10837 453 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 1.7E-75 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YP_0389 5325e7c52a64d04049c44637bdc10837 453 Pfam PF02978 Signal peptide binding domain 329 427 1.2E-32 T 14-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 YP_0389 5325e7c52a64d04049c44637bdc10837 453 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YP_0389 5325e7c52a64d04049c44637bdc10837 453 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 3.7E-23 T 14-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YP_0389 5325e7c52a64d04049c44637bdc10837 453 SMART SM00382 99 247 4.6E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0389 5325e7c52a64d04049c44637bdc10837 453 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 439 34.905 T 14-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 YP_1105 4a7058844bf40f257f761f6ab510fb20 344 SUPERFAMILY SSF52540 1 210 1.1E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1105 4a7058844bf40f257f761f6ab510fb20 344 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 18 332 8.9E-102 T 14-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 YP_1105 4a7058844bf40f257f761f6ab510fb20 344 Gene3D G3DSA:3.40.50.300 1 140 5.1E-48 T 14-10-2018 YP_1105 4a7058844bf40f257f761f6ab510fb20 344 SUPERFAMILY SSF48019 212 335 4.93E-36 T 14-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 YP_1105 4a7058844bf40f257f761f6ab510fb20 344 Pfam PF06144 DNA polymerase III, delta subunit 21 190 3.1E-44 T 14-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 YP_1105 4a7058844bf40f257f761f6ab510fb20 344 Gene3D G3DSA:1.10.8.60 143 213 1.7E-26 T 14-10-2018 YP_1105 4a7058844bf40f257f761f6ab510fb20 344 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 214 337 9.4E-64 T 14-10-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_1105 4a7058844bf40f257f761f6ab510fb20 344 Gene3D G3DSA:1.20.272.10 214 343 2.0E-48 T 14-10-2018 YP_2523 d46e1d42bae8741a68fa3277ad8acd3e 303 SUPERFAMILY SSF54814 183 298 2.42E-42 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 YP_2523 d46e1d42bae8741a68fa3277ad8acd3e 303 Gene3D G3DSA:3.30.300.20 187 303 1.7E-43 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta YP_2523 d46e1d42bae8741a68fa3277ad8acd3e 303 Gene3D G3DSA:3.40.50.300 3 185 1.2E-50 T 14-10-2018 YP_2523 d46e1d42bae8741a68fa3277ad8acd3e 303 SUPERFAMILY SSF52540 12 206 2.39E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2523 d46e1d42bae8741a68fa3277ad8acd3e 303 Pfam PF07650 KH domain 210 286 2.4E-19 T 14-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_2523 d46e1d42bae8741a68fa3277ad8acd3e 303 TIGRFAM TIGR00436 era: GTP-binding protein Era 10 281 7.7E-118 T 14-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2523 d46e1d42bae8741a68fa3277ad8acd3e 303 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 171 8.5E-41 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YP_2523 d46e1d42bae8741a68fa3277ad8acd3e 303 Pfam PF01926 50S ribosome-binding GTPase 12 126 1.9E-22 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_2523 d46e1d42bae8741a68fa3277ad8acd3e 303 Hamap MF_00367 GTPase Era [era]. 7 298 35.886 T 14-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0674 7c8fe5d9bcdc3fa3ea507cdf08b07198 281 Gene3D G3DSA:1.10.10.10 4 80 4.3E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0674 7c8fe5d9bcdc3fa3ea507cdf08b07198 281 Gene3D G3DSA:3.40.50.10490 94 278 1.1E-29 T 14-10-2018 YP_0674 7c8fe5d9bcdc3fa3ea507cdf08b07198 281 SUPERFAMILY SSF53697 98 257 5.34E-16 T 14-10-2018 YP_0674 7c8fe5d9bcdc3fa3ea507cdf08b07198 281 SUPERFAMILY SSF46689 5 83 1.09E-18 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0674 7c8fe5d9bcdc3fa3ea507cdf08b07198 281 Pfam PF01380 SIS domain 128 251 3.5E-14 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YP_0674 7c8fe5d9bcdc3fa3ea507cdf08b07198 281 Pfam PF01418 Helix-turn-helix domain, rpiR family 7 75 3.7E-13 T 14-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 YP_1699 e250d079ee45b226223a90391da0d0a7 299 SUPERFAMILY SSF55729 89 261 5.09E-34 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_1699 e250d079ee45b226223a90391da0d0a7 299 Gene3D G3DSA:3.40.630.30 78 297 8.1E-56 T 14-10-2018 YP_1699 e250d079ee45b226223a90391da0d0a7 299 Pfam PF13302 Acetyltransferase (GNAT) domain 112 237 4.9E-13 T 14-10-2018 IPR000182 GNAT domain YP_0497 f8f2b025eb568bf3d8fa0caf3b0ee065 185 SUPERFAMILY SSF54862 1 162 1.26E-39 T 14-10-2018 YP_0497 f8f2b025eb568bf3d8fa0caf3b0ee065 185 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 89 100 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_0497 f8f2b025eb568bf3d8fa0caf3b0ee065 185 Pfam PF12800 4Fe-4S binding domain 12 22 0.14 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_0497 f8f2b025eb568bf3d8fa0caf3b0ee065 185 Gene3D G3DSA:3.30.70.20 6 159 3.7E-27 T 14-10-2018 YP_0497 f8f2b025eb568bf3d8fa0caf3b0ee065 185 Gene3D G3DSA:3.30.70.20 64 134 3.7E-27 T 14-10-2018 YP_0497 f8f2b025eb568bf3d8fa0caf3b0ee065 185 Pfam PF13187 4Fe-4S dicluster domain 88 155 5.2E-8 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2555 d0c5e8d040df7b8f56109d8bc12c6dd8 267 Pfam PF00459 Inositol monophosphatase family 2 257 2.4E-70 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 YP_2555 d0c5e8d040df7b8f56109d8bc12c6dd8 267 Gene3D G3DSA:3.40.190.80 142 267 1.1E-40 T 14-10-2018 YP_2555 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 4.1E-59 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 YP_2555 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 4.1E-59 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 YP_2555 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 4.1E-59 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 YP_2555 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 4.1E-59 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 YP_2555 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 4.1E-59 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 YP_2555 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 4.1E-59 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 YP_2555 d0c5e8d040df7b8f56109d8bc12c6dd8 267 SUPERFAMILY SSF56655 1 258 1.96E-85 T 14-10-2018 YP_2555 d0c5e8d040df7b8f56109d8bc12c6dd8 267 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 14-10-2018 IPR020583 Inositol monophosphatase, metal-binding site YP_2555 d0c5e8d040df7b8f56109d8bc12c6dd8 267 Gene3D G3DSA:3.30.540.10 1 140 5.4E-52 T 14-10-2018 YP_2555 d0c5e8d040df7b8f56109d8bc12c6dd8 267 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 211 225 - T 14-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 YP_2555 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 1.2E-37 T 14-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 YP_2555 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 1.2E-37 T 14-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 YP_2555 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 104 123 1.2E-37 T 14-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 YP_2555 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 156 182 1.2E-37 T 14-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 YP_2622 6842286517ddc6f4f71c1b143d6645eb 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 403 7.3E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2622 6842286517ddc6f4f71c1b143d6645eb 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 426 7.3E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2622 6842286517ddc6f4f71c1b143d6645eb 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 389 7.3E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_2622 6842286517ddc6f4f71c1b143d6645eb 449 SMART SM00387 338 448 1.1E-28 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_2622 6842286517ddc6f4f71c1b143d6645eb 449 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 342 445 9.8E-18 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_2622 6842286517ddc6f4f71c1b143d6645eb 449 Gene3D G3DSA:1.10.287.130 176 292 3.5E-29 T 14-10-2018 YP_2622 6842286517ddc6f4f71c1b143d6645eb 449 SUPERFAMILY SSF55874 281 446 8.64E-36 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2622 6842286517ddc6f4f71c1b143d6645eb 449 SMART SM00388 228 291 6.8E-12 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_2622 6842286517ddc6f4f71c1b143d6645eb 449 SUPERFAMILY SSF158472 173 225 5.23E-8 T 14-10-2018 YP_2622 6842286517ddc6f4f71c1b143d6645eb 449 Pfam PF00512 His Kinase A (phospho-acceptor) domain 229 290 4.7E-11 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_2622 6842286517ddc6f4f71c1b143d6645eb 449 SMART SM00304 172 227 3.7E-12 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_2622 6842286517ddc6f4f71c1b143d6645eb 449 Gene3D G3DSA:3.30.565.10 296 448 9.6E-36 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_2622 6842286517ddc6f4f71c1b143d6645eb 449 SUPERFAMILY SSF47384 212 291 1.49E-15 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_2622 6842286517ddc6f4f71c1b143d6645eb 449 Pfam PF00672 HAMP domain 173 224 3.6E-11 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_3106 eddc17ae124e682ea427362b9734b8bc 276 SUPERFAMILY SSF110399 5 240 2.35E-84 T 14-10-2018 YP_3106 eddc17ae124e682ea427362b9734b8bc 276 Pfam PF05690 Thiazole biosynthesis protein ThiG 8 241 1.0E-104 T 14-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 YP_3106 eddc17ae124e682ea427362b9734b8bc 276 Gene3D G3DSA:3.20.20.70 2 268 2.5E-106 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3106 eddc17ae124e682ea427362b9734b8bc 276 Hamap MF_00443 Thiazole synthase [thiG]. 6 268 42.89 T 14-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 YP_2239 803568a4cc387c35944f27966ee74e20 345 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 5 334 48.643 T 14-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 YP_2239 803568a4cc387c35944f27966ee74e20 345 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 236 253 - T 14-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 YP_2239 803568a4cc387c35944f27966ee74e20 345 Gene3D G3DSA:3.20.20.300 3 345 1.1E-131 T 14-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 YP_2239 803568a4cc387c35944f27966ee74e20 345 SUPERFAMILY SSF51445 4 319 3.47E-86 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_2239 803568a4cc387c35944f27966ee74e20 345 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 13 294 1.1E-94 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YP_1294 0b5cadbbbd9b1351177a503137a998cb 377 Gene3D G3DSA:3.40.930.10 1 142 1.9E-40 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YP_1294 0b5cadbbbd9b1351177a503137a998cb 377 SUPERFAMILY SSF55804 148 276 2.27E-14 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YP_1294 0b5cadbbbd9b1351177a503137a998cb 377 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 14-10-2018 IPR002178 PTS EIIA type-2 domain YP_1294 0b5cadbbbd9b1351177a503137a998cb 377 SUPERFAMILY SSF55594 286 374 3.93E-23 T 14-10-2018 IPR035895 HPr-like superfamily YP_1294 0b5cadbbbd9b1351177a503137a998cb 377 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 297 304 - T 14-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YP_1294 0b5cadbbbd9b1351177a503137a998cb 377 SUPERFAMILY SSF55804 2 140 5.36E-38 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YP_1294 0b5cadbbbd9b1351177a503137a998cb 377 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 139 1.1E-29 T 14-10-2018 IPR002178 PTS EIIA type-2 domain YP_1294 0b5cadbbbd9b1351177a503137a998cb 377 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 326 341 - T 14-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YP_1294 0b5cadbbbd9b1351177a503137a998cb 377 Pfam PF00381 PTS HPr component phosphorylation site 287 368 1.2E-23 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_1294 0b5cadbbbd9b1351177a503137a998cb 377 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 286 368 3.2E-22 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_1294 0b5cadbbbd9b1351177a503137a998cb 377 Gene3D G3DSA:3.30.1340.10 285 370 1.5E-25 T 14-10-2018 IPR035895 HPr-like superfamily YP_1294 0b5cadbbbd9b1351177a503137a998cb 377 PRINTS PR00107 Phosphocarrier protein signature 325 340 8.8E-18 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_1294 0b5cadbbbd9b1351177a503137a998cb 377 PRINTS PR00107 Phosphocarrier protein signature 297 313 8.8E-18 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_1294 0b5cadbbbd9b1351177a503137a998cb 377 PRINTS PR00107 Phosphocarrier protein signature 340 357 8.8E-18 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_1880 ab978e509b3480bebb13bdffe429d1ea 245 Pfam PF02811 PHP domain 5 80 9.9E-7 T 14-10-2018 IPR004013 PHP domain GO:0003824 YP_1880 ab978e509b3480bebb13bdffe429d1ea 245 Gene3D G3DSA:3.20.20.140 1 245 7.8E-65 T 14-10-2018 YP_1880 ab978e509b3480bebb13bdffe429d1ea 245 Hamap MF_01561 Probable phosphatase YcdX [ycdX]. 1 243 49.351 T 14-10-2018 IPR023710 Probable phosphatase YcdX GO:0008270 YP_1880 ab978e509b3480bebb13bdffe429d1ea 245 SMART SM00481 4 78 1.4E-15 T 14-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal YP_1880 ab978e509b3480bebb13bdffe429d1ea 245 SUPERFAMILY SSF89550 3 241 7.98E-62 T 14-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 YP_2935 2cf3a24462016e990c21646a17252b10 508 PIRSF PIRSF001892 15 504 8.0E-175 T 14-10-2018 IPR028351 Cyclolysin transport protein CyaE GO:0005215 YP_2935 2cf3a24462016e990c21646a17252b10 508 Pfam PF02321 Outer membrane efflux protein 307 495 4.8E-21 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 YP_2935 2cf3a24462016e990c21646a17252b10 508 Pfam PF02321 Outer membrane efflux protein 87 280 1.1E-25 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 YP_2935 2cf3a24462016e990c21646a17252b10 508 Gene3D G3DSA:1.20.1600.10 80 499 3.4E-72 T 14-10-2018 YP_2935 2cf3a24462016e990c21646a17252b10 508 SUPERFAMILY SSF56954 12 497 1.44E-74 T 14-10-2018 YP_2799 51bce49ee2f68b63f908a0b2d474290a 451 SMART SM00228 115 186 0.18 T 14-10-2018 IPR001478 PDZ domain GO:0005515 YP_2799 51bce49ee2f68b63f908a0b2d474290a 451 SMART SM00228 211 280 5.1E-9 T 14-10-2018 IPR001478 PDZ domain GO:0005515 YP_2799 51bce49ee2f68b63f908a0b2d474290a 451 Gene3D G3DSA:2.30.42.10 126 220 9.1E-34 T 14-10-2018 YP_2799 51bce49ee2f68b63f908a0b2d474290a 451 SUPERFAMILY SSF50156 86 186 1.25E-11 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 YP_2799 51bce49ee2f68b63f908a0b2d474290a 451 Gene3D G3DSA:2.30.42.10 221 310 2.2E-20 T 14-10-2018 YP_2799 51bce49ee2f68b63f908a0b2d474290a 451 Pfam PF02163 Peptidase family M50 10 439 4.9E-88 T 14-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 YP_2799 51bce49ee2f68b63f908a0b2d474290a 451 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 2 451 5.7E-160 T 14-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 YP_2799 51bce49ee2f68b63f908a0b2d474290a 451 SUPERFAMILY SSF50156 195 290 2.5E-16 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 YP_2799 51bce49ee2f68b63f908a0b2d474290a 451 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 223 272 3.9E-8 T 14-10-2018 IPR001478 PDZ domain GO:0005515 YP_2369 7096f80e0bcf133152db0cdd3cafb5da 430 SUPERFAMILY SSF53383 33 427 9.28E-95 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_2369 7096f80e0bcf133152db0cdd3cafb5da 430 Gene3D G3DSA:3.90.1150.10 47 424 3.4E-147 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_2369 7096f80e0bcf133152db0cdd3cafb5da 430 Pfam PF00155 Aminotransferase class I and II 84 418 2.9E-45 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YP_2369 7096f80e0bcf133152db0cdd3cafb5da 430 Gene3D G3DSA:3.40.640.10 79 320 3.4E-147 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_2556 7c491874a5677239767aaee98d5a7fea 257 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 240 2.3E-87 T 14-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 YP_2556 7c491874a5677239767aaee98d5a7fea 257 PIRSF PIRSF004808 1 246 3.2E-77 T 14-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 YP_2556 7c491874a5677239767aaee98d5a7fea 257 SUPERFAMILY SSF75217 3 170 5.95E-39 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases YP_2556 7c491874a5677239767aaee98d5a7fea 257 Gene3D G3DSA:3.40.1280.10 1 164 4.5E-66 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YP_2556 7c491874a5677239767aaee98d5a7fea 257 Gene3D G3DSA:1.10.8.590 167 250 7.1E-33 T 14-10-2018 YP_2556 7c491874a5677239767aaee98d5a7fea 257 Pfam PF00588 SpoU rRNA Methylase family 5 154 3.0E-34 T 14-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 YP_2760 298ae14c90ef8b514343b8f176f72bdb 199 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 32 167 1.2E-43 T 14-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN YP_2760 298ae14c90ef8b514343b8f176f72bdb 199 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 42 165 2.7E-31 T 14-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN YP_2760 298ae14c90ef8b514343b8f176f72bdb 199 Gene3D G3DSA:2.60.40.4150 56 170 1.7E-27 T 14-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 Gene3D G3DSA:3.40.120.10 256 372 5.1E-34 T 14-10-2018 YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 Gene3D G3DSA:3.40.120.10 172 254 3.3E-29 T 14-10-2018 YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 SUPERFAMILY SSF55957 373 456 3.92E-18 T 14-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 Gene3D G3DSA:3.30.310.50 374 456 1.9E-25 T 14-10-2018 YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 SUPERFAMILY SSF53738 4 176 8.24E-37 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 14-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 170 189 1.6E-29 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 209 222 1.6E-29 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 238 253 1.6E-29 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 1.6E-29 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 132 2.8E-30 T 14-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 154 258 5.2E-20 T 14-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 Gene3D G3DSA:3.40.120.10 3 145 7.5E-50 T 14-10-2018 YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 378 453 8.8E-11 T 14-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 263 371 6.4E-26 T 14-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 SUPERFAMILY SSF53738 263 368 9.03E-33 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0829 05cd5b25a0373e16290ddbb82ccbd568 457 SUPERFAMILY SSF53738 153 261 7.46E-27 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_1066 8fbd65598979bfb15f90422ea5d95247 329 SMART SM00778 41 77 2.4E-19 T 14-10-2018 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal GO:0003896|GO:0004386|GO:0008270 YP_1066 8fbd65598979bfb15f90422ea5d95247 329 SUPERFAMILY SSF57783 25 101 2.13E-10 T 14-10-2018 YP_1066 8fbd65598979bfb15f90422ea5d95247 329 Pfam PF13362 Toprim domain 214 311 4.6E-19 T 14-10-2018 IPR006171 TOPRIM domain YP_1066 8fbd65598979bfb15f90422ea5d95247 329 Pfam PF08273 Zinc-binding domain of primase-helicase 41 77 7.3E-19 T 14-10-2018 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal GO:0003896|GO:0004386|GO:0008270 YP_0152 b15ee7723875f1349a2dbe0097b18679 374 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 1 372 2.2E-115 T 14-10-2018 IPR013355 Type IV pilus secretin PilQ YP_0152 b15ee7723875f1349a2dbe0097b18679 374 Gene3D G3DSA:3.30.1370.120 82 142 5.6E-8 T 14-10-2018 IPR038591 NolW-like superfamily YP_0152 b15ee7723875f1349a2dbe0097b18679 374 Pfam PF03958 Bacterial type II/III secretion system short domain 82 143 3.4E-11 T 14-10-2018 IPR005644 NolW-like YP_0152 b15ee7723875f1349a2dbe0097b18679 374 PRINTS PR00811 Bacterial general secretion pathway protein D signature 144 154 7.5E-16 T 14-10-2018 IPR001775 GspD/PilQ family YP_0152 b15ee7723875f1349a2dbe0097b18679 374 PRINTS PR00811 Bacterial general secretion pathway protein D signature 337 355 7.5E-16 T 14-10-2018 IPR001775 GspD/PilQ family YP_0152 b15ee7723875f1349a2dbe0097b18679 374 PRINTS PR00811 Bacterial general secretion pathway protein D signature 209 233 7.5E-16 T 14-10-2018 IPR001775 GspD/PilQ family YP_0152 b15ee7723875f1349a2dbe0097b18679 374 PRINTS PR00811 Bacterial general secretion pathway protein D signature 360 374 7.5E-16 T 14-10-2018 IPR001775 GspD/PilQ family YP_0152 b15ee7723875f1349a2dbe0097b18679 374 Gene3D G3DSA:3.55.50.30 1 81 3.6E-18 T 14-10-2018 YP_0152 b15ee7723875f1349a2dbe0097b18679 374 Pfam PF00263 Bacterial type II and III secretion system protein 213 372 1.6E-46 T 14-10-2018 IPR004846 Type II/III secretion system GO:0009306 YP_0152 b15ee7723875f1349a2dbe0097b18679 374 PRINTS PR01032 Gene IV protein signature 193 216 6.5E-11 T 14-10-2018 YP_0152 b15ee7723875f1349a2dbe0097b18679 374 PRINTS PR01032 Gene IV protein signature 300 328 6.5E-11 T 14-10-2018 YP_0152 b15ee7723875f1349a2dbe0097b18679 374 PRINTS PR01032 Gene IV protein signature 234 257 6.5E-11 T 14-10-2018 YP_0152 b15ee7723875f1349a2dbe0097b18679 374 PRINTS PR01032 Gene IV protein signature 353 374 6.5E-11 T 14-10-2018 YP_1042 669411f3a55a30bb060c97a5794e1491 407 SUPERFAMILY SSF52777 177 406 9.34E-90 T 14-10-2018 YP_1042 669411f3a55a30bb060c97a5794e1491 407 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 177 405 5.0E-82 T 14-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 YP_1042 669411f3a55a30bb060c97a5794e1491 407 SUPERFAMILY SSF47005 107 151 5.49E-11 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 YP_1042 669411f3a55a30bb060c97a5794e1491 407 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 407 1.0E-189 T 14-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 YP_1042 669411f3a55a30bb060c97a5794e1491 407 Pfam PF02817 e3 binding domain 114 146 1.5E-11 T 14-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 YP_1042 669411f3a55a30bb060c97a5794e1491 407 Pfam PF00364 Biotin-requiring enzyme 5 77 2.6E-19 T 14-10-2018 IPR000089 Biotin/lipoyl attachment YP_1042 669411f3a55a30bb060c97a5794e1491 407 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 14-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 YP_1042 669411f3a55a30bb060c97a5794e1491 407 SUPERFAMILY SSF51230 2 93 1.57E-24 T 14-10-2018 IPR011053 Single hybrid motif YP_1042 669411f3a55a30bb060c97a5794e1491 407 Gene3D G3DSA:3.30.559.10 175 407 5.3E-98 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 YP_1042 669411f3a55a30bb060c97a5794e1491 407 Gene3D G3DSA:2.40.50.100 2 79 1.1E-23 T 14-10-2018 YP_1042 669411f3a55a30bb060c97a5794e1491 407 Gene3D G3DSA:4.10.320.10 103 152 3.8E-22 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 YP_0816 9f7d2b8c6be4eed331a57bbd4ca49e6f 380 Gene3D G3DSA:3.90.25.10 217 380 5.7E-72 T 14-10-2018 YP_0816 9f7d2b8c6be4eed331a57bbd4ca49e6f 380 SUPERFAMILY SSF51735 28 371 2.59E-67 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0816 9f7d2b8c6be4eed331a57bbd4ca49e6f 380 Pfam PF16363 GDP-mannose 4,6 dehydratase 36 350 6.7E-33 T 14-10-2018 IPR016040 NAD(P)-binding domain YP_0816 9f7d2b8c6be4eed331a57bbd4ca49e6f 380 Gene3D G3DSA:3.40.50.720 24 216 4.2E-51 T 14-10-2018 YP_0816 9f7d2b8c6be4eed331a57bbd4ca49e6f 380 TIGRFAM TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase 29 377 5.4E-161 T 14-10-2018 IPR013445 CDP-glucose 4,6-dehydratase KEGG: 00520+4.2.1.45|MetaCyc: PWY-5833 YP_1551 7d7e7f5f261629670e09ca2a0fc2f032 369 Gene3D G3DSA:1.10.8.410 317 369 8.0E-24 T 14-10-2018 YP_1551 7d7e7f5f261629670e09ca2a0fc2f032 369 Gene3D G3DSA:3.30.70.3070 163 267 2.7E-58 T 14-10-2018 YP_1551 7d7e7f5f261629670e09ca2a0fc2f032 369 Gene3D G3DSA:1.20.1330.10 59 314 2.7E-58 T 14-10-2018 YP_1551 7d7e7f5f261629670e09ca2a0fc2f032 369 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 141 2.1E-43 T 14-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 YP_1551 7d7e7f5f261629670e09ca2a0fc2f032 369 PRINTS PR00207 Flagellin signature 110 133 7.2E-31 T 14-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 YP_1551 7d7e7f5f261629670e09ca2a0fc2f032 369 PRINTS PR00207 Flagellin signature 75 94 7.2E-31 T 14-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 YP_1551 7d7e7f5f261629670e09ca2a0fc2f032 369 PRINTS PR00207 Flagellin signature 36 53 7.2E-31 T 14-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 YP_1551 7d7e7f5f261629670e09ca2a0fc2f032 369 SUPERFAMILY SSF64518 1 368 7.72E-107 T 14-10-2018 YP_1551 7d7e7f5f261629670e09ca2a0fc2f032 369 Pfam PF00700 Bacterial flagellin C-terminal helical region 284 368 9.2E-33 T 14-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 YP_1551 7d7e7f5f261629670e09ca2a0fc2f032 369 Gene3D G3DSA:1.20.58.1830 1 58 2.9E-10 T 14-10-2018 YP_1324 a73d7a4ae17e4e339f01d3b3e5722fce 94 SUPERFAMILY SSF50715 1 94 1.92E-29 T 14-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YP_1324 a73d7a4ae17e4e339f01d3b3e5722fce 94 Pfam PF01386 Ribosomal L25p family 4 91 7.8E-23 T 14-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 YP_1324 a73d7a4ae17e4e339f01d3b3e5722fce 94 Gene3D G3DSA:2.40.240.10 1 94 1.5E-32 T 14-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YP_1324 a73d7a4ae17e4e339f01d3b3e5722fce 94 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 2 94 26.652 T 14-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 YP_1324 a73d7a4ae17e4e339f01d3b3e5722fce 94 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 8 94 2.0E-45 T 14-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 YP_0593 ace2af0c515914c859ce50d447c022f5 737 Pfam PF01138 3' exoribonuclease family, domain 1 356 488 1.3E-21 T 14-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YP_0593 ace2af0c515914c859ce50d447c022f5 737 Pfam PF01138 3' exoribonuclease family, domain 1 48 176 3.2E-18 T 14-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YP_0593 ace2af0c515914c859ce50d447c022f5 737 SUPERFAMILY SSF55666 177 267 2.38E-30 T 14-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YP_0593 ace2af0c515914c859ce50d447c022f5 737 SUPERFAMILY SSF54211 33 176 4.3E-49 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0593 ace2af0c515914c859ce50d447c022f5 737 Gene3D G3DSA:3.30.230.70 268 581 7.5E-115 T 14-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YP_0593 ace2af0c515914c859ce50d447c022f5 737 Gene3D G3DSA:2.40.50.140 654 725 1.6E-28 T 14-10-2018 YP_0593 ace2af0c515914c859ce50d447c022f5 737 SUPERFAMILY SSF55666 482 580 7.01E-28 T 14-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YP_0593 ace2af0c515914c859ce50d447c022f5 737 SMART SM00322 584 649 3.3E-12 T 14-10-2018 IPR004087 K Homology domain GO:0003676 YP_0593 ace2af0c515914c859ce50d447c022f5 737 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 42 723 0.0 T 14-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 YP_0593 ace2af0c515914c859ce50d447c022f5 737 Pfam PF03725 3' exoribonuclease family, domain 2 179 242 8.9E-14 T 14-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YP_0593 ace2af0c515914c859ce50d447c022f5 737 Pfam PF03725 3' exoribonuclease family, domain 2 492 559 1.5E-5 T 14-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YP_0593 ace2af0c515914c859ce50d447c022f5 737 Gene3D G3DSA:3.30.230.70 36 267 3.8E-78 T 14-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YP_0593 ace2af0c515914c859ce50d447c022f5 737 Pfam PF00013 KH domain 588 646 5.9E-9 T 14-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 YP_0593 ace2af0c515914c859ce50d447c022f5 737 PIRSF PIRSF005499 34 737 5.3E-300 T 14-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 YP_0593 ace2af0c515914c859ce50d447c022f5 737 Pfam PF00575 S1 RNA binding domain 651 722 2.1E-21 T 14-10-2018 IPR003029 S1 domain GO:0003676 YP_0593 ace2af0c515914c859ce50d447c022f5 737 SUPERFAMILY SSF54791 586 671 1.33E-22 T 14-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 YP_0593 ace2af0c515914c859ce50d447c022f5 737 Gene3D G3DSA:3.30.1370.10 582 653 6.1E-19 T 14-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 YP_0593 ace2af0c515914c859ce50d447c022f5 737 SUPERFAMILY SSF46915 270 352 4.45E-19 T 14-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 YP_0593 ace2af0c515914c859ce50d447c022f5 737 SUPERFAMILY SSF50249 652 727 1.12E-21 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_0593 ace2af0c515914c859ce50d447c022f5 737 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 273 352 5.1E-26 T 14-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 YP_0593 ace2af0c515914c859ce50d447c022f5 737 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 35 725 30.374 T 14-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 YP_0593 ace2af0c515914c859ce50d447c022f5 737 SUPERFAMILY SSF54211 325 520 5.06E-47 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0593 ace2af0c515914c859ce50d447c022f5 737 SMART SM00316 652 722 6.6E-26 T 14-10-2018 IPR022967 RNA-binding domain, S1 YP_3335 c7ec83ed5c5ccd5e2624bd4431818a09 445 Pfam PF08548 Peptidase M10 serralysin C terminal 225 438 6.6E-86 T 14-10-2018 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 YP_3335 c7ec83ed5c5ccd5e2624bd4431818a09 445 PIRSF PIRSF001205 16 439 1.4E-121 T 14-10-2018 IPR016294 Peptidase M10B GO:0004222|GO:0005509|GO:0005615|GO:0006508|GO:0008270 YP_3335 c7ec83ed5c5ccd5e2624bd4431818a09 445 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 358 380 0.0015 T 14-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass YP_3335 c7ec83ed5c5ccd5e2624bd4431818a09 445 SUPERFAMILY SSF55486 31 223 1.04E-52 T 14-10-2018 YP_3335 c7ec83ed5c5ccd5e2624bd4431818a09 445 SUPERFAMILY SSF51120 227 437 1.18E-34 T 14-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YP_3335 c7ec83ed5c5ccd5e2624bd4431818a09 445 SMART SM00235 46 225 1.7E-16 T 14-10-2018 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 YP_3335 c7ec83ed5c5ccd5e2624bd4431818a09 445 Gene3D G3DSA:3.40.390.10 40 229 1.3E-136 T 14-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 YP_3335 c7ec83ed5c5ccd5e2624bd4431818a09 445 Gene3D G3DSA:2.150.10.10 230 429 1.3E-136 T 14-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YP_2630 e153365ee892e6bcb98faadf6ae2edcb 408 Gene3D G3DSA:3.90.1150.10 28 398 3.0E-149 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_2630 e153365ee892e6bcb98faadf6ae2edcb 408 Gene3D G3DSA:3.40.640.10 85 308 3.0E-149 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_2630 e153365ee892e6bcb98faadf6ae2edcb 408 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 20 404 2.7E-149 T 14-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 YP_2630 e153365ee892e6bcb98faadf6ae2edcb 408 Pfam PF00155 Aminotransferase class I and II 74 396 2.7E-34 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YP_2630 e153365ee892e6bcb98faadf6ae2edcb 408 SUPERFAMILY SSF53383 16 405 3.67E-100 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_1903 efcf16c55e2839a451b6d41e616487e4 253 Pfam PF00005 ABC transporter 21 150 5.3E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1903 efcf16c55e2839a451b6d41e616487e4 253 SMART SM00382 30 200 1.3E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1903 efcf16c55e2839a451b6d41e616487e4 253 Gene3D G3DSA:3.40.50.300 3 242 3.0E-58 T 14-10-2018 YP_1903 efcf16c55e2839a451b6d41e616487e4 253 SUPERFAMILY SSF52540 3 219 8.89E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0854 48efc81959648d98ca3bb328f093a5db 70 Pfam PF13275 S4 domain 8 68 4.3E-22 T 14-10-2018 YP_0854 48efc81959648d98ca3bb328f093a5db 70 Gene3D G3DSA:3.10.290.10 1 70 3.1E-25 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YP_0854 48efc81959648d98ca3bb328f093a5db 70 SUPERFAMILY SSF55174 6 69 7.2E-19 T 14-10-2018 YP_1932 d48de836925feda5a8ec605bf1b4d040 232 SUPERFAMILY SSF53335 9 222 8.31E-26 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1932 d48de836925feda5a8ec605bf1b4d040 232 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 101 176 2.1E-4 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YP_1932 d48de836925feda5a8ec605bf1b4d040 232 Gene3D G3DSA:1.10.1020.10 17 116 2.0E-10 T 14-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 YP_1932 d48de836925feda5a8ec605bf1b4d040 232 Gene3D G3DSA:3.40.50.150 9 196 2.0E-10 T 14-10-2018 YP_3606 87b2afd925790230a349d4b3c470aaeb 392 SUPERFAMILY SSF51905 2 382 1.46E-55 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3606 87b2afd925790230a349d4b3c470aaeb 392 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 292 305 - T 14-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 YP_3606 87b2afd925790230a349d4b3c470aaeb 392 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 3 388 6.4E-133 T 14-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 YP_3606 87b2afd925790230a349d4b3c470aaeb 392 Gene3D G3DSA:3.50.50.60 3 336 7.1E-98 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3606 87b2afd925790230a349d4b3c470aaeb 392 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 3 388 2.2E-146 T 14-10-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 YP_3606 87b2afd925790230a349d4b3c470aaeb 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 8.4E-15 T 14-10-2018 YP_3606 87b2afd925790230a349d4b3c470aaeb 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 8.4E-15 T 14-10-2018 YP_3606 87b2afd925790230a349d4b3c470aaeb 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 8.4E-15 T 14-10-2018 YP_3606 87b2afd925790230a349d4b3c470aaeb 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 8.4E-15 T 14-10-2018 YP_3606 87b2afd925790230a349d4b3c470aaeb 392 Gene3D G3DSA:3.30.9.50 78 267 7.1E-98 T 14-10-2018 YP_3606 87b2afd925790230a349d4b3c470aaeb 392 Pfam PF01494 FAD binding domain 2 343 1.4E-22 T 14-10-2018 IPR002938 FAD-binding domain GO:0071949 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 Gene3D G3DSA:1.20.120.30 22 191 5.9E-42 T 14-10-2018 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 482 2.0E-55 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 SUPERFAMILY SSF58104 234 515 3.92E-74 T 14-10-2018 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 SMART SM00319 44 180 5.1E-30 T 14-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 SMART SM00283 267 514 5.7E-96 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 SMART SM00304 214 266 4.7E-10 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 442 471 5.3E-80 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 191 211 5.3E-80 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 288 317 5.3E-80 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 5.3E-80 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 392 5.3E-80 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 423 5.3E-80 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 5.3E-80 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 Gene3D G3DSA:1.10.287.950 214 516 7.8E-93 T 14-10-2018 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 292 314 - T 14-10-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YP_1807 8895fb818d42c4bacc37978d14c41afc 536 Pfam PF02203 Tar ligand binding domain homologue 1 170 3.3E-51 T 14-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 Pfam PF00672 HAMP domain 216 261 8.1E-9 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_1807 8895fb818d42c4bacc37978d14c41afc 536 SUPERFAMILY SSF47170 38 178 1.44E-41 T 14-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YP_0085 5f6e6a5ce55767ab59aa7753bdc47c0a 259 Gene3D G3DSA:3.40.50.300 65 252 1.5E-49 T 14-10-2018 YP_0085 5f6e6a5ce55767ab59aa7753bdc47c0a 259 Pfam PF01695 IstB-like ATP binding protein 56 235 2.3E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_0085 5f6e6a5ce55767ab59aa7753bdc47c0a 259 SUPERFAMILY SSF52540 70 254 7.12E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0085 5f6e6a5ce55767ab59aa7753bdc47c0a 259 SMART SM00382 101 235 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0085 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PIRSF PIRSF003073 1 257 8.0E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0085 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 193 207 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0085 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 105 123 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2096 5f6e6a5ce55767ab59aa7753bdc47c0a 259 Gene3D G3DSA:3.40.50.300 65 252 1.5E-49 T 14-10-2018 YP_2096 5f6e6a5ce55767ab59aa7753bdc47c0a 259 Pfam PF01695 IstB-like ATP binding protein 56 235 2.3E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_2096 5f6e6a5ce55767ab59aa7753bdc47c0a 259 SUPERFAMILY SSF52540 70 254 7.12E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2096 5f6e6a5ce55767ab59aa7753bdc47c0a 259 SMART SM00382 101 235 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2096 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PIRSF PIRSF003073 1 257 8.0E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_2096 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 193 207 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2096 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 105 123 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1073 5f6e6a5ce55767ab59aa7753bdc47c0a 259 Gene3D G3DSA:3.40.50.300 65 252 1.5E-49 T 14-10-2018 YP_1073 5f6e6a5ce55767ab59aa7753bdc47c0a 259 Pfam PF01695 IstB-like ATP binding protein 56 235 2.3E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_1073 5f6e6a5ce55767ab59aa7753bdc47c0a 259 SUPERFAMILY SSF52540 70 254 7.12E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1073 5f6e6a5ce55767ab59aa7753bdc47c0a 259 SMART SM00382 101 235 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1073 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PIRSF PIRSF003073 1 257 8.0E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_1073 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 193 207 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1073 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 105 123 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1342 5f6e6a5ce55767ab59aa7753bdc47c0a 259 Gene3D G3DSA:3.40.50.300 65 252 1.5E-49 T 14-10-2018 YP_1342 5f6e6a5ce55767ab59aa7753bdc47c0a 259 Pfam PF01695 IstB-like ATP binding protein 56 235 2.3E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_1342 5f6e6a5ce55767ab59aa7753bdc47c0a 259 SUPERFAMILY SSF52540 70 254 7.12E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1342 5f6e6a5ce55767ab59aa7753bdc47c0a 259 SMART SM00382 101 235 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1342 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PIRSF PIRSF003073 1 257 8.0E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_1342 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 193 207 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1342 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 105 123 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3377 5f6e6a5ce55767ab59aa7753bdc47c0a 259 Gene3D G3DSA:3.40.50.300 65 252 1.5E-49 T 14-10-2018 YP_3377 5f6e6a5ce55767ab59aa7753bdc47c0a 259 Pfam PF01695 IstB-like ATP binding protein 56 235 2.3E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_3377 5f6e6a5ce55767ab59aa7753bdc47c0a 259 SUPERFAMILY SSF52540 70 254 7.12E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3377 5f6e6a5ce55767ab59aa7753bdc47c0a 259 SMART SM00382 101 235 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3377 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PIRSF PIRSF003073 1 257 8.0E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_3377 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 193 207 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3377 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 105 123 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3276 5f6e6a5ce55767ab59aa7753bdc47c0a 259 Gene3D G3DSA:3.40.50.300 65 252 1.5E-49 T 14-10-2018 YP_3276 5f6e6a5ce55767ab59aa7753bdc47c0a 259 Pfam PF01695 IstB-like ATP binding protein 56 235 2.3E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_3276 5f6e6a5ce55767ab59aa7753bdc47c0a 259 SUPERFAMILY SSF52540 70 254 7.12E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3276 5f6e6a5ce55767ab59aa7753bdc47c0a 259 SMART SM00382 101 235 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3276 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PIRSF PIRSF003073 1 257 8.0E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_3276 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 193 207 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3276 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 105 123 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0443 5f6e6a5ce55767ab59aa7753bdc47c0a 259 Gene3D G3DSA:3.40.50.300 65 252 1.5E-49 T 14-10-2018 YP_0443 5f6e6a5ce55767ab59aa7753bdc47c0a 259 Pfam PF01695 IstB-like ATP binding protein 56 235 2.3E-72 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 YP_0443 5f6e6a5ce55767ab59aa7753bdc47c0a 259 SUPERFAMILY SSF52540 70 254 7.12E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0443 5f6e6a5ce55767ab59aa7753bdc47c0a 259 SMART SM00382 101 235 8.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0443 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PIRSF PIRSF003073 1 257 8.0E-93 T 14-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YP_0443 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 193 207 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0443 5f6e6a5ce55767ab59aa7753bdc47c0a 259 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 105 123 5.3E-5 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_0867 62d7fe119223206f179843f8dc12b5a6 587 Pfam PF12146 Serine aminopeptidase, S33 32 268 4.8E-64 T 14-10-2018 IPR022742 Serine aminopeptidase, S33 YP_0867 62d7fe119223206f179843f8dc12b5a6 587 Gene3D G3DSA:3.40.50.1820 2 286 2.0E-42 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_0867 62d7fe119223206f179843f8dc12b5a6 587 SUPERFAMILY SSF53474 9 282 2.19E-30 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_0867 62d7fe119223206f179843f8dc12b5a6 587 SUPERFAMILY SSF53335 393 578 6.38E-17 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0867 62d7fe119223206f179843f8dc12b5a6 587 Pfam PF12147 Putative methyltransferase 276 583 1.8E-151 T 14-10-2018 IPR022744 Methyltransferase domain, putative YP_0867 62d7fe119223206f179843f8dc12b5a6 587 Gene3D G3DSA:3.40.50.150 385 573 9.7E-15 T 14-10-2018 YP_3753 e32fa7f4072ef72264b7779145254d29 145 PIRSF PIRSF029225 2 131 3.9E-55 T 14-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_3753 e32fa7f4072ef72264b7779145254d29 145 SUPERFAMILY SSF102220 27 135 1.23E-36 T 14-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_3753 e32fa7f4072ef72264b7779145254d29 145 ProDom PD032475 DNA POLYMERASE PSI SUBUNIT III TRANSFERASE NUCLEOTIDYLTRANSFERASE III 3D-STRUCTURE DNA-DIRECTED 34 125 2.0E-47 T 14-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_3753 e32fa7f4072ef72264b7779145254d29 145 Gene3D G3DSA:3.40.50.10220 33 137 6.2E-38 T 14-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_3753 e32fa7f4072ef72264b7779145254d29 145 Pfam PF03603 DNA polymerase III psi subunit 3 127 2.2E-48 T 14-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 853 965 2.8E-24 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 SUPERFAMILY SSF53850 85 303 2.5E-23 T 14-10-2018 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 Gene3D G3DSA:3.40.190.10 416 512 5.5E-50 T 14-10-2018 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 SUPERFAMILY SSF52172 990 1108 2.42E-34 T 14-10-2018 IPR011006 CheY-like superfamily YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 90 303 1.2E-14 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 Gene3D G3DSA:1.10.287.130 729 804 4.1E-16 T 14-10-2018 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 SUPERFAMILY SSF47384 724 804 1.06E-14 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 SMART SM00448 992 1106 4.0E-33 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 Gene3D G3DSA:3.40.190.10 320 549 5.5E-50 T 14-10-2018 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 SMART SM00062 88 305 6.8E-41 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 SMART SM00062 329 553 6.5E-18 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 Gene3D G3DSA:3.40.190.10 86 301 8.2E-39 T 14-10-2018 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 PRINTS PR00344 Bacterial sensor protein C-terminal signature 891 905 5.5E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 PRINTS PR00344 Bacterial sensor protein C-terminal signature 909 919 5.5E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 PRINTS PR00344 Bacterial sensor protein C-terminal signature 926 944 5.5E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 PRINTS PR00344 Bacterial sensor protein C-terminal signature 950 963 5.5E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 Pfam PF00072 Response regulator receiver domain 994 1105 3.5E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 SMART SM00387 850 966 9.8E-33 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 SMART SM00388 739 803 1.4E-15 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 Pfam PF00512 His Kinase A (phospho-acceptor) domain 740 803 6.6E-12 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 Gene3D G3DSA:3.40.190.10 172 264 8.2E-39 T 14-10-2018 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 SUPERFAMILY SSF53850 321 551 3.68E-34 T 14-10-2018 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 Gene3D G3DSA:3.30.450.20 592 728 2.3E-5 T 14-10-2018 YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 SUPERFAMILY SSF55874 792 964 1.57E-41 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 Gene3D G3DSA:3.30.565.10 805 970 4.0E-45 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 337 549 4.1E-26 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_1666 ead765d88a5c19ee48517a1d0085ecaa 1289 Gene3D G3DSA:3.40.50.12740 991 1223 5.0E-37 T 14-10-2018 YP_3097 8cd843d2872c809adee31f476290c84f 355 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 346 1.8E-135 T 14-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 YP_3097 8cd843d2872c809adee31f476290c84f 355 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 349 50.333 T 14-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 YP_3097 8cd843d2872c809adee31f476290c84f 355 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 14-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 YP_3097 8cd843d2872c809adee31f476290c84f 355 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 347 4.1E-142 T 14-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 YP_3097 8cd843d2872c809adee31f476290c84f 355 SUPERFAMILY SSF51726 2 353 8.02E-122 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 YP_3097 8cd843d2872c809adee31f476290c84f 355 Gene3D G3DSA:3.20.20.210 1 354 7.3E-162 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 YP_3097 8cd843d2872c809adee31f476290c84f 355 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 14-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 YP_3576 8648d78151eecbc4f1daf9c9feff25de 66 Gene3D G3DSA:1.10.238.160 5 63 4.0E-6 T 14-10-2018 YP_3576 8648d78151eecbc4f1daf9c9feff25de 66 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 6 54 1.9E-18 T 14-10-2018 IPR010260 DNA-binding transcriptional activator AlpA YP_3576 8648d78151eecbc4f1daf9c9feff25de 66 SUPERFAMILY SSF46955 6 63 3.66E-5 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily YP_3410 9e3b6b5c556202a7b5f9887be6f37698 788 Gene3D G3DSA:3.30.70.270 358 538 1.7E-55 T 14-10-2018 YP_3410 9e3b6b5c556202a7b5f9887be6f37698 788 SUPERFAMILY SSF141868 541 780 1.05E-87 T 14-10-2018 IPR035919 EAL domain superfamily YP_3410 9e3b6b5c556202a7b5f9887be6f37698 788 Pfam PF00990 Diguanylate cyclase, GGDEF domain 365 521 5.5E-46 T 14-10-2018 IPR000160 GGDEF domain YP_3410 9e3b6b5c556202a7b5f9887be6f37698 788 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 238 359 7.0E-13 T 14-10-2018 IPR000014 PAS domain YP_3410 9e3b6b5c556202a7b5f9887be6f37698 788 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 360 523 1.7E-40 T 14-10-2018 IPR000160 GGDEF domain YP_3410 9e3b6b5c556202a7b5f9887be6f37698 788 SMART SM00091 241 306 1.9E-5 T 14-10-2018 IPR000014 PAS domain YP_3410 9e3b6b5c556202a7b5f9887be6f37698 788 Pfam PF00989 PAS fold 241 349 6.4E-6 T 14-10-2018 IPR013767 PAS fold GO:0006355 YP_3410 9e3b6b5c556202a7b5f9887be6f37698 788 SUPERFAMILY SSF55073 369 526 1.02E-46 T 14-10-2018 IPR029787 Nucleotide cyclase YP_3410 9e3b6b5c556202a7b5f9887be6f37698 788 Pfam PF00563 EAL domain 543 772 1.5E-70 T 14-10-2018 IPR001633 EAL domain YP_3410 9e3b6b5c556202a7b5f9887be6f37698 788 SMART SM00267 353 525 1.0E-57 T 14-10-2018 IPR000160 GGDEF domain YP_3410 9e3b6b5c556202a7b5f9887be6f37698 788 Gene3D G3DSA:3.20.20.450 539 786 8.4E-95 T 14-10-2018 IPR035919 EAL domain superfamily YP_3410 9e3b6b5c556202a7b5f9887be6f37698 788 Pfam PF05228 CHASE4 domain 2 160 8.9E-18 T 14-10-2018 IPR007892 CHASE4 YP_3410 9e3b6b5c556202a7b5f9887be6f37698 788 SMART SM00052 535 777 6.8E-112 T 14-10-2018 IPR001633 EAL domain YP_3410 9e3b6b5c556202a7b5f9887be6f37698 788 SUPERFAMILY SSF55785 231 351 3.54E-16 T 14-10-2018 IPR035965 PAS domain superfamily YP_3410 9e3b6b5c556202a7b5f9887be6f37698 788 Gene3D G3DSA:3.30.450.20 231 351 3.9E-16 T 14-10-2018 YP_2744 767267d63445c786cf3887af6af4e90a 424 Pfam PF13393 Histidyl-tRNA synthetase 10 312 2.2E-45 T 14-10-2018 YP_2744 767267d63445c786cf3887af6af4e90a 424 Gene3D G3DSA:3.30.930.10 2 322 4.7E-118 T 14-10-2018 YP_2744 767267d63445c786cf3887af6af4e90a 424 SUPERFAMILY SSF55681 5 320 1.26E-105 T 14-10-2018 YP_2744 767267d63445c786cf3887af6af4e90a 424 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 411 4.6E-155 T 14-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 YP_2744 767267d63445c786cf3887af6af4e90a 424 SUPERFAMILY SSF52954 327 419 2.29E-23 T 14-10-2018 YP_2744 767267d63445c786cf3887af6af4e90a 424 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 421 33.069 T 14-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 YP_2744 767267d63445c786cf3887af6af4e90a 424 PIRSF PIRSF001549 2 421 5.0E-125 T 14-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 YP_2744 767267d63445c786cf3887af6af4e90a 424 Gene3D G3DSA:3.40.50.800 327 422 1.8E-24 T 14-10-2018 IPR036621 Anticodon-binding domain superfamily YP_2744 767267d63445c786cf3887af6af4e90a 424 Pfam PF03129 Anticodon binding domain 331 418 1.3E-9 T 14-10-2018 IPR004154 Anticodon-binding YP_0759 f716f0345c253b6bfcd1d7674ba47959 198 Gene3D G3DSA:3.40.50.880 2 198 2.0E-55 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_0759 f716f0345c253b6bfcd1d7674ba47959 198 SUPERFAMILY SSF52317 7 191 8.82E-49 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_0759 f716f0345c253b6bfcd1d7674ba47959 198 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 7 184 2.7E-65 T 14-10-2018 IPR006287 Protein/nucleic acid deglycase DJ-1 Reactome: R-HSA-3899300 YP_0759 f716f0345c253b6bfcd1d7674ba47959 198 Pfam PF01965 DJ-1/PfpI family 6 171 2.5E-45 T 14-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 YP_3182 0d1f7ab87ca2610d496b7bf0087ab552 420 SUPERFAMILY SSF51735 5 198 1.35E-44 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3182 0d1f7ab87ca2610d496b7bf0087ab552 420 PIRSF PIRSF500136 1 420 4.4E-147 T 14-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 YP_3182 0d1f7ab87ca2610d496b7bf0087ab552 420 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 206 293 3.0E-26 T 14-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 YP_3182 0d1f7ab87ca2610d496b7bf0087ab552 420 SUPERFAMILY SSF52413 311 419 6.02E-26 T 14-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 YP_3182 0d1f7ab87ca2610d496b7bf0087ab552 420 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 5 416 2.3E-118 T 14-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 YP_3182 0d1f7ab87ca2610d496b7bf0087ab552 420 Gene3D G3DSA:3.40.50.720 205 420 6.7E-59 T 14-10-2018 YP_3182 0d1f7ab87ca2610d496b7bf0087ab552 420 Gene3D G3DSA:3.40.50.720 2 202 1.7E-63 T 14-10-2018 YP_3182 0d1f7ab87ca2610d496b7bf0087ab552 420 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 5 187 6.4E-58 T 14-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 YP_3182 0d1f7ab87ca2610d496b7bf0087ab552 420 SUPERFAMILY SSF48179 206 298 1.62E-27 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_3182 0d1f7ab87ca2610d496b7bf0087ab552 420 SMART SM00984 324 420 2.9E-26 T 14-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 YP_3182 0d1f7ab87ca2610d496b7bf0087ab552 420 Hamap MF_02029 UDP-N-acetyl-D-mannosamine dehydrogenase [wecC]. 1 420 78.968 T 14-10-2018 IPR032891 UDP-N-acetyl-D-mannosamine dehydrogenase WecC GO:0009246|GO:0089714 KEGG: 00520+1.1.1.336|MetaCyc: PWY-7335 YP_3182 0d1f7ab87ca2610d496b7bf0087ab552 420 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 324 419 2.0E-19 T 14-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 YP_3182 0d1f7ab87ca2610d496b7bf0087ab552 420 PIRSF PIRSF000124 4 418 4.9E-73 T 14-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 YP_2374 33e8e3ad7ff20d6e814400679de0ed52 165 Hamap MF_00762 UPF0304 protein YfbU [yfbU]. 2 165 38.102 T 14-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU YP_2374 33e8e3ad7ff20d6e814400679de0ed52 165 SUPERFAMILY SSF116960 2 165 8.63E-70 T 14-10-2018 YP_2374 33e8e3ad7ff20d6e814400679de0ed52 165 Gene3D G3DSA:1.10.3190.10 55 165 9.7E-40 T 14-10-2018 IPR023146 YfbU, alpha-helical bundle domain superfamily YP_2374 33e8e3ad7ff20d6e814400679de0ed52 165 ProDom PD035118 UPF0304 YFBU PLASMID YPO2563/Y1624/YP2374 YBFU PM1500 OXYGEN ECA3037 VV12093 PROTEIN 2 165 1.0E-95 T 14-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU YP_2374 33e8e3ad7ff20d6e814400679de0ed52 165 PIRSF PIRSF006272 2 165 7.2E-75 T 14-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU YP_2374 33e8e3ad7ff20d6e814400679de0ed52 165 Pfam PF03887 YfbU domain 2 165 1.3E-69 T 14-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU YP_2374 33e8e3ad7ff20d6e814400679de0ed52 165 Gene3D G3DSA:1.10.287.680 2 54 5.5E-33 T 14-10-2018 IPR023145 YfbU, helix-hairpin domain superfamily YP_3462 ef72e535226537eb14fea01dee1fc4d0 516 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 50 512 1.1E-203 T 14-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YP_3462 ef72e535226537eb14fea01dee1fc4d0 516 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 93 512 1.6E-170 T 14-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YP_2460 3a89dbea5e090d2bbbdd9f3410a0b6b5 80 Gene3D G3DSA:2.40.50.140 12 79 7.2E-29 T 14-10-2018 YP_2460 3a89dbea5e090d2bbbdd9f3410a0b6b5 80 ProSitePatterns PS00352 'Cold-shock' domain signature. 28 47 - T 14-10-2018 IPR019844 Cold-shock conserved site YP_2460 3a89dbea5e090d2bbbdd9f3410a0b6b5 80 SUPERFAMILY SSF50249 10 79 1.22E-25 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_2460 3a89dbea5e090d2bbbdd9f3410a0b6b5 80 PRINTS PR00050 Cold shock protein signature 17 32 7.8E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_2460 3a89dbea5e090d2bbbdd9f3410a0b6b5 80 PRINTS PR00050 Cold shock protein signature 38 47 7.8E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_2460 3a89dbea5e090d2bbbdd9f3410a0b6b5 80 PRINTS PR00050 Cold shock protein signature 53 71 7.8E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_2460 3a89dbea5e090d2bbbdd9f3410a0b6b5 80 PIRSF PIRSF002599 10 80 2.9E-24 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 YP_2460 3a89dbea5e090d2bbbdd9f3410a0b6b5 80 Pfam PF00313 'Cold-shock' DNA-binding domain 15 79 3.1E-32 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_2460 3a89dbea5e090d2bbbdd9f3410a0b6b5 80 SMART SM00357 16 80 3.3E-31 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 YP_3563 7aa9f168cc51ba00fd32c9a46a68f5ee 101 Pfam PF05488 PAAR motif 21 90 2.3E-22 T 14-10-2018 IPR008727 PAAR motif YP_3563 7aa9f168cc51ba00fd32c9a46a68f5ee 101 Gene3D G3DSA:2.60.200.60 12 98 2.8E-10 T 14-10-2018 YP_3699 a25bff66703a6ac962407a3fe941c663 273 Gene3D G3DSA:3.30.360.10 131 238 1.6E-102 T 14-10-2018 YP_3699 a25bff66703a6ac962407a3fe941c663 273 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 5 268 3.6E-105 T 14-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YP_3699 a25bff66703a6ac962407a3fe941c663 273 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 129 2.9E-42 T 14-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YP_3699 a25bff66703a6ac962407a3fe941c663 273 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 132 268 7.0E-42 T 14-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YP_3699 a25bff66703a6ac962407a3fe941c663 273 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 154 171 - T 14-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YP_3699 a25bff66703a6ac962407a3fe941c663 273 SUPERFAMILY SSF55347 131 240 1.37E-37 T 14-10-2018 YP_3699 a25bff66703a6ac962407a3fe941c663 273 Gene3D G3DSA:3.40.50.720 7 268 1.6E-102 T 14-10-2018 YP_3699 a25bff66703a6ac962407a3fe941c663 273 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 6 269 35.085 T 14-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YP_3699 a25bff66703a6ac962407a3fe941c663 273 PIRSF PIRSF000161 4 272 2.0E-89 T 14-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YP_3699 a25bff66703a6ac962407a3fe941c663 273 SUPERFAMILY SSF51735 4 272 4.17E-52 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1099 463b8390bba7586f01e5d766e1149a58 263 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 41 148 5.5E-15 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YP_1099 463b8390bba7586f01e5d766e1149a58 263 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 64 254 3.7E-24 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1099 463b8390bba7586f01e5d766e1149a58 263 SUPERFAMILY SSF161098 41 240 9.94E-37 T 14-10-2018 IPR035906 MetI-like superfamily YP_1099 463b8390bba7586f01e5d766e1149a58 263 Gene3D G3DSA:1.10.3720.10 35 255 2.9E-43 T 14-10-2018 IPR035906 MetI-like superfamily YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 SUPERFAMILY SSF81665 413 911 1.7E-10 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 Pfam PF00122 E1-E2 ATPase 447 627 1.2E-50 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 418 922 1.8E-84 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 Gene3D G3DSA:3.40.50.1000 629 897 6.3E-92 T 14-10-2018 IPR023214 HAD superfamily YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 SUPERFAMILY SSF56784 646 951 7.33E-61 T 14-10-2018 IPR036412 HAD-like superfamily YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 ProSitePatterns PS01229 Hypothetical cof family signature 2. 845 867 - T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 379 954 5.8E-179 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 ProSitePatterns PS01047 Heavy-metal-associated domain. 9 38 - T 14-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 Gene3D G3DSA:3.30.70.100 228 291 4.4E-19 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 SUPERFAMILY SSF55008 226 294 5.76E-18 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 496 510 7.2E-25 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 770 781 7.2E-25 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 792 802 7.2E-25 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 845 864 7.2E-25 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 868 880 7.2E-25 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 648 662 7.2E-25 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 Gene3D G3DSA:3.30.70.100 70 131 4.4E-15 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 Gene3D G3DSA:3.30.70.100 6 64 1.7E-11 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 SUPERFAMILY SSF55008 2 67 8.77E-12 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 SUPERFAMILY SSF81653 449 546 6.93E-25 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 Pfam PF00403 Heavy-metal-associated domain 74 128 1.3E-9 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 Pfam PF00403 Heavy-metal-associated domain 8 62 2.2E-8 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 Pfam PF00403 Heavy-metal-associated domain 234 286 5.9E-12 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 SUPERFAMILY SSF55008 70 133 3.01E-13 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 Gene3D G3DSA:2.70.150.20 434 550 1.6E-33 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 Gene3D G3DSA:3.40.1110.10 659 777 6.3E-92 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 ProSitePatterns PS01047 Heavy-metal-associated domain. 232 261 - T 14-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 ProSitePatterns PS01047 Heavy-metal-associated domain. 75 104 - T 14-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 Pfam PF00702 haloacid dehalogenase-like hydrolase 645 859 1.4E-46 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 PRINTS PR00943 Copper-transporting ATPase signature 569 583 9.1E-7 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 PRINTS PR00943 Copper-transporting ATPase signature 364 383 9.1E-7 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 PRINTS PR00943 Copper-transporting ATPase signature 631 646 9.1E-7 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 PRINTS PR00943 Copper-transporting ATPase signature 822 839 9.1E-7 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 PRINTS PR00943 Copper-transporting ATPase signature 436 454 9.1E-7 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 360 954 7.7E-185 T 14-10-2018 YP_0838 ae482ce93e8b80cb8006e0bbfbf1dbee 961 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 650 656 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 YP_2313 e929c5e9bf791b4499bd2bdea608bb79 334 SUPERFAMILY SSF47413 7 65 1.97E-16 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_2313 e929c5e9bf791b4499bd2bdea608bb79 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 54 3.7E-17 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2313 e929c5e9bf791b4499bd2bdea608bb79 334 SUPERFAMILY SSF53822 65 319 4.71E-39 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_2313 e929c5e9bf791b4499bd2bdea608bb79 334 Gene3D G3DSA:1.10.260.40 2 65 9.8E-22 T 14-10-2018 YP_2313 e929c5e9bf791b4499bd2bdea608bb79 334 Pfam PF13407 Periplasmic binding protein domain 68 314 6.7E-16 T 14-10-2018 IPR025997 Periplasmic binding protein YP_2313 e929c5e9bf791b4499bd2bdea608bb79 334 Gene3D G3DSA:3.40.50.2300 168 296 2.5E-40 T 14-10-2018 YP_2313 e929c5e9bf791b4499bd2bdea608bb79 334 Gene3D G3DSA:3.40.50.2300 67 316 2.5E-40 T 14-10-2018 YP_2313 e929c5e9bf791b4499bd2bdea608bb79 334 SMART SM00354 7 77 4.5E-25 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2257 27fdad0d7df19c4cb19e0bbdc93faced 316 SUPERFAMILY SSF53901 4 316 1.55E-69 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_2257 27fdad0d7df19c4cb19e0bbdc93faced 316 Gene3D G3DSA:3.40.47.10 1 170 3.5E-72 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_2257 27fdad0d7df19c4cb19e0bbdc93faced 316 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 316 69.865 T 14-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 YP_2257 27fdad0d7df19c4cb19e0bbdc93faced 316 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 316 5.0E-145 T 14-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 YP_2257 27fdad0d7df19c4cb19e0bbdc93faced 316 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 183 5.8E-31 T 14-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 YP_2257 27fdad0d7df19c4cb19e0bbdc93faced 316 Gene3D G3DSA:3.40.47.10 171 316 2.6E-50 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_2257 27fdad0d7df19c4cb19e0bbdc93faced 316 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 227 315 3.0E-35 T 14-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 YP_4028 2b32ffa9c31bb7bae135c232a781652c 460 SUPERFAMILY SSF50615 1 75 2.56E-25 T 14-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_4028 2b32ffa9c31bb7bae135c232a781652c 460 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 333 342 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_4028 2b32ffa9c31bb7bae135c232a781652c 460 Gene3D G3DSA:2.40.10.170 2 75 9.0E-31 T 14-10-2018 YP_4028 2b32ffa9c31bb7bae135c232a781652c 460 Gene3D G3DSA:3.40.50.300 76 344 3.3E-113 T 14-10-2018 YP_4028 2b32ffa9c31bb7bae135c232a781652c 460 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 460 56.822 T 14-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 YP_4028 2b32ffa9c31bb7bae135c232a781652c 460 SMART SM00382 142 405 1.2E-4 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_4028 2b32ffa9c31bb7bae135c232a781652c 460 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 460 1.4E-262 T 14-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 YP_4028 2b32ffa9c31bb7bae135c232a781652c 460 Gene3D G3DSA:1.10.1140.10 345 460 4.4E-60 T 14-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_4028 2b32ffa9c31bb7bae135c232a781652c 460 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 72 1.8E-21 T 14-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_4028 2b32ffa9c31bb7bae135c232a781652c 460 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 130 342 3.8E-63 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_4028 2b32ffa9c31bb7bae135c232a781652c 460 SUPERFAMILY SSF52540 77 348 1.24E-90 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_4028 2b32ffa9c31bb7bae135c232a781652c 460 SUPERFAMILY SSF47917 345 459 2.09E-55 T 14-10-2018 YP_3595 ab53097c5e6ce2c43d34b3b4e442edb8 330 Gene3D G3DSA:3.30.70.1630 25 195 7.4E-60 T 14-10-2018 YP_3595 ab53097c5e6ce2c43d34b3b4e442edb8 330 SUPERFAMILY SSF103025 19 243 3.14E-65 T 14-10-2018 YP_3595 ab53097c5e6ce2c43d34b3b4e442edb8 330 Pfam PF01571 Aminomethyltransferase folate-binding domain 32 181 1.1E-7 T 14-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain YP_3595 ab53097c5e6ce2c43d34b3b4e442edb8 330 Gene3D G3DSA:2.40.30.160 198 319 1.5E-44 T 14-10-2018 YP_3595 ab53097c5e6ce2c43d34b3b4e442edb8 330 SUPERFAMILY SSF101790 245 326 2.68E-26 T 14-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal YP_3595 ab53097c5e6ce2c43d34b3b4e442edb8 330 Gene3D G3DSA:3.30.70.1400 28 114 7.4E-60 T 14-10-2018 YP_3595 ab53097c5e6ce2c43d34b3b4e442edb8 330 PIRSF PIRSF006487 21 293 2.0E-10 T 14-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 YP_3595 ab53097c5e6ce2c43d34b3b4e442edb8 330 Hamap MF_01175 tRNA-modifying protein YgfZ [ygfZ]. 1 323 50.893 T 14-10-2018 IPR023758 tRNA-modifying protein YgfZ GO:0005542|GO:0009451 YP_3595 ab53097c5e6ce2c43d34b3b4e442edb8 330 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 188 253 2.2E-26 T 14-10-2018 IPR017703 YgfZ/GcvT conserved site YP_2620 4e45ab29893a18a545e66a480a42821a 169 Gene3D G3DSA:2.70.70.10 9 169 2.4E-63 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_2620 4e45ab29893a18a545e66a480a42821a 169 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 22 146 2.6E-49 T 14-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 YP_2620 4e45ab29893a18a545e66a480a42821a 169 SUPERFAMILY SSF51261 12 167 4.36E-56 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_2620 4e45ab29893a18a545e66a480a42821a 169 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 23 143 3.2E-50 T 14-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 YP_2620 4e45ab29893a18a545e66a480a42821a 169 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 85 97 - T 14-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 YP_2013 75456db55a354ea596218c5ff0193008 348 SUPERFAMILY SSF52096 96 298 1.1E-30 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YP_2013 75456db55a354ea596218c5ff0193008 348 Pfam PF01343 Peptidase family S49 160 304 3.5E-45 T 14-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 YP_2013 75456db55a354ea596218c5ff0193008 348 Gene3D G3DSA:3.40.1750.20 201 265 7.7E-43 T 14-10-2018 YP_2013 75456db55a354ea596218c5ff0193008 348 Gene3D G3DSA:3.90.226.10 104 300 7.7E-43 T 14-10-2018 YP_2013 75456db55a354ea596218c5ff0193008 348 Pfam PF08496 Peptidase family S49 N-terminal 2 157 4.9E-58 T 14-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 YP_0595 aae25d65795b7c163b9c314ea8894f54 669 Pfam PF03880 DbpA RNA binding domain 508 577 1.9E-19 T 14-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain YP_0595 aae25d65795b7c163b9c314ea8894f54 669 Pfam PF12343 Cold shock protein DEAD box A 596 669 1.3E-22 T 14-10-2018 IPR021046 Cold-shock protein, DEAD box A, C-terminal GO:0016817 YP_0595 aae25d65795b7c163b9c314ea8894f54 669 SUPERFAMILY SSF52540 9 215 1.75E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0595 aae25d65795b7c163b9c314ea8894f54 669 SMART SM00490 266 347 1.5E-31 T 14-10-2018 IPR001650 Helicase, C-terminal YP_0595 aae25d65795b7c163b9c314ea8894f54 669 SUPERFAMILY SSF52540 153 361 2.34E-49 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0595 aae25d65795b7c163b9c314ea8894f54 669 Pfam PF00271 Helicase conserved C-terminal domain 239 347 8.8E-29 T 14-10-2018 IPR001650 Helicase, C-terminal YP_0595 aae25d65795b7c163b9c314ea8894f54 669 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 7 579 46.583 T 14-10-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 YP_0595 aae25d65795b7c163b9c314ea8894f54 669 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 160 168 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YP_0595 aae25d65795b7c163b9c314ea8894f54 669 Pfam PF00270 DEAD/DEAH box helicase 37 201 4.5E-51 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YP_0595 aae25d65795b7c163b9c314ea8894f54 669 Gene3D G3DSA:3.40.50.300 221 440 4.1E-50 T 14-10-2018 YP_0595 aae25d65795b7c163b9c314ea8894f54 669 Gene3D G3DSA:3.30.70.330 505 578 3.2E-9 T 14-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YP_0595 aae25d65795b7c163b9c314ea8894f54 669 SMART SM00487 31 229 3.2E-64 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_0595 aae25d65795b7c163b9c314ea8894f54 669 Gene3D G3DSA:3.40.50.300 4 218 4.7E-77 T 14-10-2018 YP_2584 508a45504b2860d201b9cce019b1b0d5 339 Pfam PF13343 Bacterial extracellular solute-binding protein 81 309 2.4E-27 T 14-10-2018 YP_2584 508a45504b2860d201b9cce019b1b0d5 339 Gene3D G3DSA:3.40.190.10 128 314 1.8E-107 T 14-10-2018 YP_2584 508a45504b2860d201b9cce019b1b0d5 339 PIRSF PIRSF002825 7 339 3.6E-80 T 14-10-2018 IPR026045 Ferric binding protein YP_2584 508a45504b2860d201b9cce019b1b0d5 339 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 126 143 - T 14-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 YP_2584 508a45504b2860d201b9cce019b1b0d5 339 Gene3D G3DSA:3.40.190.10 35 309 1.8E-107 T 14-10-2018 YP_2584 508a45504b2860d201b9cce019b1b0d5 339 SUPERFAMILY SSF53850 33 332 1.86E-72 T 14-10-2018 YP_3604 7c70fcf45a941465f3077a07456c6f14 365 PIRSF PIRSF006487 1 363 1.3E-81 T 14-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 YP_3604 7c70fcf45a941465f3077a07456c6f14 365 SUPERFAMILY SSF103025 3 277 7.38E-93 T 14-10-2018 YP_3604 7c70fcf45a941465f3077a07456c6f14 365 Gene3D G3DSA:3.30.70.1400 51 138 1.7E-89 T 14-10-2018 YP_3604 7c70fcf45a941465f3077a07456c6f14 365 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 263 353 4.3E-19 T 14-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 YP_3604 7c70fcf45a941465f3077a07456c6f14 365 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 2 358 1.6E-152 T 14-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 YP_3604 7c70fcf45a941465f3077a07456c6f14 365 SUPERFAMILY SSF101790 276 360 2.29E-24 T 14-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal YP_3604 7c70fcf45a941465f3077a07456c6f14 365 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 254 5.3E-84 T 14-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain YP_3604 7c70fcf45a941465f3077a07456c6f14 365 Gene3D G3DSA:4.10.1250.10 232 276 1.1E-26 T 14-10-2018 YP_3604 7c70fcf45a941465f3077a07456c6f14 365 Gene3D G3DSA:3.30.1360.120 6 231 1.7E-89 T 14-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 YP_3604 7c70fcf45a941465f3077a07456c6f14 365 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 359 43.75 T 14-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 YP_3604 7c70fcf45a941465f3077a07456c6f14 365 Gene3D G3DSA:2.40.30.110 277 365 1.1E-33 T 14-10-2018 YP_1444 c7421fb27747acdf88ca873d623be70d 363 Gene3D G3DSA:1.20.1090.10 162 363 1.2E-57 T 14-10-2018 YP_1444 c7421fb27747acdf88ca873d623be70d 363 Gene3D G3DSA:3.40.50.1970 12 160 9.1E-25 T 14-10-2018 YP_1444 c7421fb27747acdf88ca873d623be70d 363 SUPERFAMILY SSF56796 10 357 1.83E-61 T 14-10-2018 YP_1444 c7421fb27747acdf88ca873d623be70d 363 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 152 180 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 YP_1444 c7421fb27747acdf88ca873d623be70d 363 PIRSF PIRSF000112 2 363 5.7E-114 T 14-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 YP_1444 c7421fb27747acdf88ca873d623be70d 363 Pfam PF00465 Iron-containing alcohol dehydrogenase 12 350 1.2E-46 T 14-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 YP_2041 47666678c1f244d078cc6249a4b8bc6a 301 SMART SM00342 23 110 1.5E-24 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_2041 47666678c1f244d078cc6249a4b8bc6a 301 SUPERFAMILY SSF46689 8 57 6.66E-8 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2041 47666678c1f244d078cc6249a4b8bc6a 301 SUPERFAMILY SSF46689 61 115 4.48E-8 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2041 47666678c1f244d078cc6249a4b8bc6a 301 Pfam PF12833 Helix-turn-helix domain 30 111 1.7E-14 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_2041 47666678c1f244d078cc6249a4b8bc6a 301 Pfam PF06445 GyrI-like small molecule binding domain 133 285 3.4E-19 T 14-10-2018 IPR029442 GyrI-like small molecule binding domain YP_2041 47666678c1f244d078cc6249a4b8bc6a 301 Gene3D G3DSA:1.10.10.60 7 57 1.0E-20 T 14-10-2018 YP_2041 47666678c1f244d078cc6249a4b8bc6a 301 Gene3D G3DSA:3.20.80.10 129 294 1.9E-20 T 14-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily YP_2041 47666678c1f244d078cc6249a4b8bc6a 301 SUPERFAMILY SSF55136 131 276 3.31E-18 T 14-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily YP_2041 47666678c1f244d078cc6249a4b8bc6a 301 Gene3D G3DSA:1.10.10.60 58 126 1.3E-18 T 14-10-2018 YP_1913 22be9c7a9fae2741bf230cf90f43673a 114 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 90 108 - T 14-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 YP_1913 22be9c7a9fae2741bf230cf90f43673a 114 Gene3D G3DSA:3.30.1330.40 1 114 5.4E-34 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YP_1913 22be9c7a9fae2741bf230cf90f43673a 114 Pfam PF01042 Endoribonuclease L-PSP 4 113 1.8E-25 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 YP_1913 22be9c7a9fae2741bf230cf90f43673a 114 SUPERFAMILY SSF55298 2 114 1.32E-26 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YP_0658 172913fc2997faade7ed242c11d8dbf4 452 SUPERFAMILY SSF56024 254 394 2.92E-18 T 14-10-2018 YP_0658 172913fc2997faade7ed242c11d8dbf4 452 Gene3D G3DSA:3.30.870.10 25 233 5.5E-176 T 14-10-2018 YP_0658 172913fc2997faade7ed242c11d8dbf4 452 Pfam PF13091 PLD-like domain 258 403 3.0E-21 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 YP_0658 172913fc2997faade7ed242c11d8dbf4 452 SUPERFAMILY SSF56024 11 212 3.77E-27 T 14-10-2018 YP_0658 172913fc2997faade7ed242c11d8dbf4 452 PIRSF PIRSF000850 1 452 5.9E-262 T 14-10-2018 YP_0658 172913fc2997faade7ed242c11d8dbf4 452 Gene3D G3DSA:3.30.870.10 19 448 5.5E-176 T 14-10-2018 YP_0658 172913fc2997faade7ed242c11d8dbf4 452 SMART SM00155 353 380 0.0025 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 YP_0658 172913fc2997faade7ed242c11d8dbf4 452 SMART SM00155 134 160 0.0049 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 YP_3634 4a404ee5ce2027d6b67ad97caebc3d69 495 Pfam PF02875 Mur ligase family, glutamate ligase domain 339 424 4.7E-25 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 YP_3634 4a404ee5ce2027d6b67ad97caebc3d69 495 Gene3D G3DSA:3.40.1190.10 105 341 2.2E-87 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YP_3634 4a404ee5ce2027d6b67ad97caebc3d69 495 Pfam PF08245 Mur ligase middle domain 114 318 6.2E-50 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 YP_3634 4a404ee5ce2027d6b67ad97caebc3d69 495 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 4 491 34.066 T 14-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 YP_3634 4a404ee5ce2027d6b67ad97caebc3d69 495 SUPERFAMILY SSF63418 5 103 6.02E-24 T 14-10-2018 IPR035911 MurE/MurF, N-terminal YP_3634 4a404ee5ce2027d6b67ad97caebc3d69 495 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 21 491 1.8E-164 T 14-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 YP_3634 4a404ee5ce2027d6b67ad97caebc3d69 495 Gene3D G3DSA:3.90.190.20 342 494 4.0E-56 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YP_3634 4a404ee5ce2027d6b67ad97caebc3d69 495 SUPERFAMILY SSF53623 105 338 1.96E-76 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YP_3634 4a404ee5ce2027d6b67ad97caebc3d69 495 Pfam PF01225 Mur ligase family, catalytic domain 25 102 6.2E-12 T 14-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 YP_3634 4a404ee5ce2027d6b67ad97caebc3d69 495 SUPERFAMILY SSF53244 339 491 1.68E-51 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YP_3634 4a404ee5ce2027d6b67ad97caebc3d69 495 Gene3D G3DSA:3.40.1390.10 2 104 1.1E-32 T 14-10-2018 YP_1048 af25d3b5e81b7bad8e7fdcf0044cd578 426 ProSitePatterns PS00480 Citrate synthase signature. 302 314 - T 14-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 YP_1048 af25d3b5e81b7bad8e7fdcf0044cd578 426 PIRSF PIRSF001369 37 426 1.5E-174 T 14-10-2018 IPR024176 Citrate synthase, bacterial-type YP_1048 af25d3b5e81b7bad8e7fdcf0044cd578 426 Gene3D G3DSA:1.10.580.10 56 409 1.8E-151 T 14-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 YP_1048 af25d3b5e81b7bad8e7fdcf0044cd578 426 Gene3D G3DSA:1.10.230.10 267 375 1.8E-151 T 14-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain YP_1048 af25d3b5e81b7bad8e7fdcf0044cd578 426 Pfam PF00285 Citrate synthase, C-terminal domain 45 409 1.5E-132 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 YP_1048 af25d3b5e81b7bad8e7fdcf0044cd578 426 Gene3D G3DSA:2.20.28.60 1 49 1.2E-20 T 14-10-2018 YP_1048 af25d3b5e81b7bad8e7fdcf0044cd578 426 SUPERFAMILY SSF48256 3 421 2.09E-168 T 14-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 YP_1048 af25d3b5e81b7bad8e7fdcf0044cd578 426 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 13 420 1.2E-235 T 14-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 YP_1048 af25d3b5e81b7bad8e7fdcf0044cd578 426 PRINTS PR00143 Citrate synthase signature 378 392 2.0E-56 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 YP_1048 af25d3b5e81b7bad8e7fdcf0044cd578 426 PRINTS PR00143 Citrate synthase signature 218 233 2.0E-56 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 YP_1048 af25d3b5e81b7bad8e7fdcf0044cd578 426 PRINTS PR00143 Citrate synthase signature 295 315 2.0E-56 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 YP_1048 af25d3b5e81b7bad8e7fdcf0044cd578 426 PRINTS PR00143 Citrate synthase signature 240 268 2.0E-56 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 YP_1048 af25d3b5e81b7bad8e7fdcf0044cd578 426 PRINTS PR00143 Citrate synthase signature 358 374 2.0E-56 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 YP_1048 af25d3b5e81b7bad8e7fdcf0044cd578 426 PRINTS PR00143 Citrate synthase signature 164 177 2.0E-56 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 YP_2499 fe9e2dae381399373c439393880388be 487 PRINTS PR00147 DNA photolyase signature 145 161 5.7E-30 T 14-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 YP_2499 fe9e2dae381399373c439393880388be 487 PRINTS PR00147 DNA photolyase signature 384 398 5.7E-30 T 14-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 YP_2499 fe9e2dae381399373c439393880388be 487 PRINTS PR00147 DNA photolyase signature 345 363 5.7E-30 T 14-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 YP_2499 fe9e2dae381399373c439393880388be 487 PRINTS PR00147 DNA photolyase signature 325 341 5.7E-30 T 14-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 YP_2499 fe9e2dae381399373c439393880388be 487 SUPERFAMILY SSF48173 192 472 6.54E-108 T 14-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 YP_2499 fe9e2dae381399373c439393880388be 487 Gene3D G3DSA:1.10.579.10 293 475 5.7E-82 T 14-10-2018 YP_2499 fe9e2dae381399373c439393880388be 487 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 325 337 - T 14-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal YP_2499 fe9e2dae381399373c439393880388be 487 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 345 364 - T 14-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal YP_2499 fe9e2dae381399373c439393880388be 487 Gene3D G3DSA:3.40.50.620 5 204 4.3E-78 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_2499 fe9e2dae381399373c439393880388be 487 SUPERFAMILY SSF52425 3 183 1.09E-53 T 14-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 YP_2499 fe9e2dae381399373c439393880388be 487 Gene3D G3DSA:1.25.40.80 134 289 4.3E-78 T 14-10-2018 YP_2499 fe9e2dae381399373c439393880388be 487 Pfam PF03441 FAD binding domain of DNA photolyase 275 469 2.1E-81 T 14-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 YP_2499 fe9e2dae381399373c439393880388be 487 Pfam PF00875 DNA photolyase 5 175 3.2E-43 T 14-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 YP_2043 4b89a15d2addfeb8ef1cb033043452fa 188 Gene3D G3DSA:3.20.20.20 37 99 1.3E-12 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_2043 4b89a15d2addfeb8ef1cb033043452fa 188 Pfam PF04060 Putative Fe-S cluster 44 76 1.9E-14 T 14-10-2018 IPR007202 4Fe-4S domain GO:0051536 YP_2043 4b89a15d2addfeb8ef1cb033043452fa 188 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 2 185 1.7E-85 T 14-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 YP_2043 4b89a15d2addfeb8ef1cb033043452fa 188 SUPERFAMILY SSF54862 38 176 1.5E-29 T 14-10-2018 YP_2043 4b89a15d2addfeb8ef1cb033043452fa 188 Gene3D G3DSA:3.30.70.20 142 182 3.3E-7 T 14-10-2018 YP_2043 4b89a15d2addfeb8ef1cb033043452fa 188 PIRSF PIRSF005784 3 188 6.9E-86 T 14-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 YP_2043 4b89a15d2addfeb8ef1cb033043452fa 188 Gene3D G3DSA:3.30.70.20 100 141 1.1E-7 T 14-10-2018 YP_2043 4b89a15d2addfeb8ef1cb033043452fa 188 Pfam PF14697 4Fe-4S dicluster domain 110 164 2.5E-17 T 14-10-2018 YP_2043 4b89a15d2addfeb8ef1cb033043452fa 188 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 4 169 25.456 T 14-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 YP_2043 4b89a15d2addfeb8ef1cb033043452fa 188 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 147 158 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_0052 05af4319c94097504f8cddb53d47f552 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 15.908 T 14-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0052 05af4319c94097504f8cddb53d47f552 55 Gene3D G3DSA:2.20.28.120 1 55 2.0E-31 T 14-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0052 05af4319c94097504f8cddb53d47f552 55 SUPERFAMILY SSF57829 1 53 2.87E-20 T 14-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 YP_0052 05af4319c94097504f8cddb53d47f552 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 1.3E-27 T 14-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0052 05af4319c94097504f8cddb53d47f552 55 Pfam PF00471 Ribosomal protein L33 7 53 7.3E-19 T 14-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0052 05af4319c94097504f8cddb53d47f552 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 14-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_2908 6f0fddf9765e9f7a8cec6dff69b881c0 396 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 304 310 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YP_2908 6f0fddf9765e9f7a8cec6dff69b881c0 396 SUPERFAMILY SSF53335 191 371 1.61E-23 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_2908 6f0fddf9765e9f7a8cec6dff69b881c0 396 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 2 375 50.267 T 14-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 YP_2908 6f0fddf9765e9f7a8cec6dff69b881c0 396 Pfam PF05175 Methyltransferase small domain 201 372 8.1E-53 T 14-10-2018 IPR007848 Methyltransferase small domain GO:0008168 YP_2908 6f0fddf9765e9f7a8cec6dff69b881c0 396 PIRSF PIRSF037565 1 376 8.9E-167 T 14-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 YP_2908 6f0fddf9765e9f7a8cec6dff69b881c0 396 Gene3D G3DSA:3.40.50.150 9 182 3.4E-57 T 14-10-2018 YP_2908 6f0fddf9765e9f7a8cec6dff69b881c0 396 Gene3D G3DSA:3.40.50.150 185 381 1.5E-48 T 14-10-2018 YP_1632 9dd5c5ca5445d52c5b5801243ab58d4b 158 TIGRFAM TIGR02337 HpaR: homoprotocatechuate degradation operon regulator, HpaR 7 136 1.3E-54 T 14-10-2018 IPR012712 Homoprotocatechuate degradation transcriptional regulator HpaR GO:0003677|GO:0010124|GO:0045892 YP_1632 9dd5c5ca5445d52c5b5801243ab58d4b 158 Gene3D G3DSA:1.10.10.10 3 137 1.8E-27 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1632 9dd5c5ca5445d52c5b5801243ab58d4b 158 SMART SM00347 25 125 1.3E-22 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YP_1632 9dd5c5ca5445d52c5b5801243ab58d4b 158 Pfam PF01047 MarR family 32 89 2.0E-11 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YP_1632 9dd5c5ca5445d52c5b5801243ab58d4b 158 SUPERFAMILY SSF46785 7 141 1.43E-26 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0563 83b80e8b813fcf0bbf0736d09b55d9b7 372 Gene3D G3DSA:3.30.540.10 36 230 5.5E-72 T 14-10-2018 YP_0563 83b80e8b813fcf0bbf0736d09b55d9b7 372 SUPERFAMILY SSF56655 33 362 6.48E-110 T 14-10-2018 YP_0563 83b80e8b813fcf0bbf0736d09b55d9b7 372 PIRSF PIRSF500210 34 367 7.3E-124 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YP_0563 83b80e8b813fcf0bbf0736d09b55d9b7 372 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 37 365 41.871 T 14-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YP_0563 83b80e8b813fcf0bbf0736d09b55d9b7 372 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 305 317 - T 14-10-2018 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YP_0563 83b80e8b813fcf0bbf0736d09b55d9b7 372 PIRSF PIRSF000904 33 368 4.7E-121 T 14-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YP_0563 83b80e8b813fcf0bbf0736d09b55d9b7 372 Gene3D G3DSA:3.40.190.80 232 369 3.1E-58 T 14-10-2018 YP_0563 83b80e8b813fcf0bbf0736d09b55d9b7 372 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 62 89 3.9E-72 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YP_0563 83b80e8b813fcf0bbf0736d09b55d9b7 372 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 339 364 3.9E-72 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YP_0563 83b80e8b813fcf0bbf0736d09b55d9b7 372 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 183 206 3.9E-72 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YP_0563 83b80e8b813fcf0bbf0736d09b55d9b7 372 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 99 125 3.9E-72 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YP_0563 83b80e8b813fcf0bbf0736d09b55d9b7 372 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 214 237 3.9E-72 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YP_0563 83b80e8b813fcf0bbf0736d09b55d9b7 372 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 240 267 3.9E-72 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YP_0563 83b80e8b813fcf0bbf0736d09b55d9b7 372 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 38 229 4.4E-77 T 14-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YP_3447 8a7d782243eb942c49673f0859e7773b 442 SUPERFAMILY SSF51905 1 228 5.95E-18 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3447 8a7d782243eb942c49673f0859e7773b 442 Gene3D G3DSA:3.50.50.60 1 421 1.4E-112 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3447 8a7d782243eb942c49673f0859e7773b 442 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 3 333 7.1E-110 T 14-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YP_3447 8a7d782243eb942c49673f0859e7773b 442 SUPERFAMILY SSF51905 132 401 6.15E-5 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_1357 686fdee099bafac0402127901208d0a5 514 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 50 510 1.3E-201 T 14-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YP_1357 686fdee099bafac0402127901208d0a5 514 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 93 510 4.4E-168 T 14-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YP_0454 f9ca76374e7fdf73b4196af1f549148e 151 Gene3D G3DSA:1.10.3680.10 1 151 7.7E-43 T 14-10-2018 IPR029024 TerB-like YP_0454 f9ca76374e7fdf73b4196af1f549148e 151 SUPERFAMILY SSF158682 23 150 8.5E-17 T 14-10-2018 IPR029024 TerB-like YP_0454 f9ca76374e7fdf73b4196af1f549148e 151 Pfam PF05099 Tellurite resistance protein TerB 15 150 3.5E-24 T 14-10-2018 IPR007791 Co-chaperone DjlA, N-terminal YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 Gene3D G3DSA:3.30.70.1450 367 458 1.4E-28 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 SUPERFAMILY SSF51735 1 152 2.15E-36 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 SUPERFAMILY SSF116726 390 440 1.44E-7 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 5.8E-34 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 5.8E-34 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 5.8E-34 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 5.8E-34 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 5.8E-34 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 SUPERFAMILY SSF51735 232 376 5.43E-33 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 Pfam PF02080 TrkA-C domain 390 451 3.2E-10 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 Pfam PF02080 TrkA-C domain 156 225 6.1E-12 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 Gene3D G3DSA:3.40.50.720 233 366 4.1E-36 T 14-10-2018 YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 SUPERFAMILY SSF116726 148 226 2.75E-10 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 Gene3D G3DSA:3.30.70.1450 140 232 1.5E-22 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 Gene3D G3DSA:3.40.50.720 2 139 1.8E-49 T 14-10-2018 YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 Pfam PF02254 TrkA-N domain 235 350 9.0E-25 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 YP_0237 0d6c2155cbbd3fb750b4d57747c0739b 458 Pfam PF02254 TrkA-N domain 3 124 1.2E-29 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 YP_2061 c3c34197556dff1471eccd88a992a687 481 Gene3D G3DSA:1.20.200.10 155 423 4.2E-120 T 14-10-2018 YP_2061 c3c34197556dff1471eccd88a992a687 481 Gene3D G3DSA:1.10.40.30 424 481 4.9E-31 T 14-10-2018 YP_2061 c3c34197556dff1471eccd88a992a687 481 Pfam PF10415 Fumarase C C-terminus 424 477 1.5E-25 T 14-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YP_2061 c3c34197556dff1471eccd88a992a687 481 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 21 477 3.3E-243 T 14-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YP_2061 c3c34197556dff1471eccd88a992a687 481 SUPERFAMILY SSF48557 20 478 2.04E-157 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 YP_2061 c3c34197556dff1471eccd88a992a687 481 PRINTS PR00145 Argininosuccinate lyase family signature 333 349 1.2E-5 T 14-10-2018 YP_2061 c3c34197556dff1471eccd88a992a687 481 PRINTS PR00145 Argininosuccinate lyase family signature 191 211 1.2E-5 T 14-10-2018 YP_2061 c3c34197556dff1471eccd88a992a687 481 Pfam PF00206 Lyase 28 358 6.2E-117 T 14-10-2018 IPR022761 Fumarate lyase, N-terminal YP_2061 c3c34197556dff1471eccd88a992a687 481 Hamap MF_00743 Fumarate hydratase class II [fumC]. 20 478 91.499 T 14-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YP_2061 c3c34197556dff1471eccd88a992a687 481 ProSitePatterns PS00163 Fumarate lyases signature. 333 342 - T 14-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 YP_2061 c3c34197556dff1471eccd88a992a687 481 Gene3D G3DSA:1.10.275.10 21 154 4.8E-56 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal YP_2061 c3c34197556dff1471eccd88a992a687 481 PRINTS PR00149 Fumarate lyase superfamily signature 150 168 3.0E-33 T 14-10-2018 IPR000362 Fumarate lyase family YP_2061 c3c34197556dff1471eccd88a992a687 481 PRINTS PR00149 Fumarate lyase superfamily signature 196 214 3.0E-33 T 14-10-2018 IPR000362 Fumarate lyase family YP_2061 c3c34197556dff1471eccd88a992a687 481 PRINTS PR00149 Fumarate lyase superfamily signature 287 314 3.0E-33 T 14-10-2018 IPR000362 Fumarate lyase family YP_2061 c3c34197556dff1471eccd88a992a687 481 PRINTS PR00149 Fumarate lyase superfamily signature 333 349 3.0E-33 T 14-10-2018 IPR000362 Fumarate lyase family YP_1748 388c23806398ab95ba91157ef6e10f4e 555 Gene3D G3DSA:1.50.10.20 321 376 1.2E-5 T 14-10-2018 YP_1748 388c23806398ab95ba91157ef6e10f4e 555 Gene3D G3DSA:1.50.10.20 16 309 2.0E-97 T 14-10-2018 YP_1748 388c23806398ab95ba91157ef6e10f4e 555 Gene3D G3DSA:1.50.10.20 377 519 7.1E-30 T 14-10-2018 YP_1748 388c23806398ab95ba91157ef6e10f4e 555 PIRSF PIRSF001432 1 555 2.6E-296 T 14-10-2018 IPR010702 Periplasmic pectate lyase GO:0016837|GO:0042597|GO:0045490 YP_1748 388c23806398ab95ba91157ef6e10f4e 555 Pfam PF06917 Periplasmic pectate lyase 14 540 2.5E-124 T 14-10-2018 IPR010702 Periplasmic pectate lyase GO:0016837|GO:0042597|GO:0045490 YP_1743 dcc9804cae67d267a0e52903a019583d 236 Gene3D G3DSA:2.40.160.40 25 236 4.9E-76 T 14-10-2018 YP_1743 dcc9804cae67d267a0e52903a019583d 236 SUPERFAMILY SSF56935 54 236 3.14E-12 T 14-10-2018 YP_1743 dcc9804cae67d267a0e52903a019583d 236 Pfam PF06178 Oligogalacturonate-specific porin protein (KdgM) 19 236 1.7E-75 T 14-10-2018 IPR009331 Oligogalacturonate-specific porin YP_0291 dfa0950a279839eef40afc55e9d921cc 853 Gene3D G3DSA:1.20.120.1080 410 498 1.1E-9 T 14-10-2018 YP_0291 dfa0950a279839eef40afc55e9d921cc 853 Pfam PF00270 DEAD/DEAH box helicase 49 201 5.3E-11 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YP_0291 dfa0950a279839eef40afc55e9d921cc 853 SMART SM00847 427 518 1.0E-15 T 14-10-2018 IPR007502 Helicase-associated domain GO:0004386 YP_0291 dfa0950a279839eef40afc55e9d921cc 853 Pfam PF08482 ATP-dependent helicase C-terminal 706 838 3.7E-53 T 14-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal YP_0291 dfa0950a279839eef40afc55e9d921cc 853 Gene3D G3DSA:3.40.50.300 16 218 5.1E-55 T 14-10-2018 YP_0291 dfa0950a279839eef40afc55e9d921cc 853 Pfam PF04408 Helicase associated domain (HA2) 428 489 8.8E-13 T 14-10-2018 IPR007502 Helicase-associated domain GO:0004386 YP_0291 dfa0950a279839eef40afc55e9d921cc 853 Gene3D G3DSA:3.40.50.300 219 385 1.4E-50 T 14-10-2018 YP_0291 dfa0950a279839eef40afc55e9d921cc 853 SUPERFAMILY SSF52540 51 378 2.0E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0291 dfa0950a279839eef40afc55e9d921cc 853 SMART SM00490 262 367 2.6E-15 T 14-10-2018 IPR001650 Helicase, C-terminal YP_0291 dfa0950a279839eef40afc55e9d921cc 853 SMART SM00487 36 225 9.7E-19 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_0291 dfa0950a279839eef40afc55e9d921cc 853 Pfam PF00271 Helicase conserved C-terminal domain 244 366 1.6E-12 T 14-10-2018 IPR001650 Helicase, C-terminal YP_0291 dfa0950a279839eef40afc55e9d921cc 853 PIRSF PIRSF005496 33 852 0.0 T 14-10-2018 YP_0291 dfa0950a279839eef40afc55e9d921cc 853 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 38 850 0.0 T 14-10-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 YP_3350 f0c65ce70aec0853d1d949fe93817292 738 Pfam PF05170 AsmA family 1 622 2.5E-115 T 14-10-2018 IPR007844 AsmA YP_3102 8935d167ccd975e3cc251741d0b1ac0a 681 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 162 614 9.8E-223 T 14-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 YP_3102 8935d167ccd975e3cc251741d0b1ac0a 681 Gene3D G3DSA:3.20.20.540 233 546 6.9E-153 T 14-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 YP_3102 8935d167ccd975e3cc251741d0b1ac0a 681 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 162 615 99.448 T 14-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 YP_3102 8935d167ccd975e3cc251741d0b1ac0a 681 Pfam PF13667 ThiC-associated domain 42 123 4.3E-34 T 14-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 YP_3102 8935d167ccd975e3cc251741d0b1ac0a 681 Pfam PF01964 Radical SAM ThiC family 163 611 4.3E-199 T 14-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 YP_2907 7b7353b5a58c116935828e073e9cb00f 994 SMART SM00869 720 983 9.1E-32 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_2907 7b7353b5a58c116935828e073e9cb00f 994 Pfam PF03212 Pertactin 363 479 3.6E-6 T 14-10-2018 IPR004899 Pertactin, central region YP_2907 7b7353b5a58c116935828e073e9cb00f 994 SUPERFAMILY SSF51126 23 480 2.39E-45 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor YP_2907 7b7353b5a58c116935828e073e9cb00f 994 Pfam PF03797 Autotransporter beta-domain 723 972 1.3E-36 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_2907 7b7353b5a58c116935828e073e9cb00f 994 Gene3D G3DSA:2.160.20.20 23 483 8.8E-41 T 14-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YP_2907 7b7353b5a58c116935828e073e9cb00f 994 Gene3D G3DSA:2.40.128.130 679 994 5.6E-74 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_2907 7b7353b5a58c116935828e073e9cb00f 994 SUPERFAMILY SSF103515 686 994 3.01E-38 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_2907 7b7353b5a58c116935828e073e9cb00f 994 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 373 509 1.1E-23 T 14-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YP_2907 7b7353b5a58c116935828e073e9cb00f 994 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 603 994 4.3E-67 T 14-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YP_1192 3502fa8c56c448123586dc8668d73b6d 310 SUPERFAMILY SSF56112 28 282 1.81E-16 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily YP_1192 3502fa8c56c448123586dc8668d73b6d 310 Pfam PF03881 Fructosamine kinase 42 287 1.0E-7 T 14-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 YP_1192 3502fa8c56c448123586dc8668d73b6d 310 Gene3D G3DSA:3.90.1200.10 123 306 4.6E-9 T 14-10-2018 YP_2256 3f2316e9b5de2dffc20c33e578d343f1 309 SUPERFAMILY SSF55048 128 197 4.97E-18 T 14-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YP_2256 3f2316e9b5de2dffc20c33e578d343f1 309 Gene3D G3DSA:3.30.70.250 125 197 1.5E-107 T 14-10-2018 YP_2256 3f2316e9b5de2dffc20c33e578d343f1 309 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 291 7.2E-129 T 14-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 YP_2256 3f2316e9b5de2dffc20c33e578d343f1 309 PIRSF PIRSF000446 1 309 3.5E-137 T 14-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 YP_2256 3f2316e9b5de2dffc20c33e578d343f1 309 Pfam PF00698 Acyl transferase domain 7 298 1.2E-36 T 14-10-2018 IPR014043 Acyl transferase YP_2256 3f2316e9b5de2dffc20c33e578d343f1 309 Gene3D G3DSA:3.40.366.10 6 286 1.5E-107 T 14-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 YP_2256 3f2316e9b5de2dffc20c33e578d343f1 309 SUPERFAMILY SSF52151 4 307 1.41E-79 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YP_2256 3f2316e9b5de2dffc20c33e578d343f1 309 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 307 1.9E-39 T 14-10-2018 IPR020801 Polyketide synthase, acyl transferase domain YP_4016 52007265095f5f377d874ef6336abab2 269 SUPERFAMILY SSF161098 40 227 2.62E-40 T 14-10-2018 IPR035906 MetI-like superfamily YP_4016 52007265095f5f377d874ef6336abab2 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 62 241 1.1E-19 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_4016 52007265095f5f377d874ef6336abab2 269 Gene3D G3DSA:1.10.3720.10 40 243 2.6E-45 T 14-10-2018 IPR035906 MetI-like superfamily YP_4016 52007265095f5f377d874ef6336abab2 269 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 43 134 2.3E-16 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 Gene3D G3DSA:3.30.450.20 152 266 1.8E-19 T 14-10-2018 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 Pfam PF01627 Hpt domain 686 769 8.5E-14 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 153 276 1.0E-15 T 14-10-2018 IPR000014 PAS domain YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 Gene3D G3DSA:1.10.287.970 1 89 1.7E-38 T 14-10-2018 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 505 5.5E-30 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 SUPERFAMILY SSF47226 661 773 7.98E-31 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 SMART SM00091 155 221 4.9E-8 T 14-10-2018 IPR000014 PAS domain YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 SUPERFAMILY SSF55874 336 505 7.2E-41 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 504 3.1E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 459 3.1E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 485 3.1E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 445 3.1E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 Gene3D G3DSA:1.10.287.130 267 345 2.3E-21 T 14-10-2018 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 Gene3D G3DSA:1.20.120.160 656 778 1.8E-31 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 SMART SM00073 675 772 1.0E-16 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 Gene3D G3DSA:3.30.565.10 348 509 7.2E-43 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 SMART SM00387 394 507 3.1E-36 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 SUPERFAMILY SSF47384 269 347 9.42E-17 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 Pfam PF00989 PAS fold 157 266 2.6E-17 T 14-10-2018 IPR013767 PAS fold GO:0006355 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 SMART SM00448 525 638 3.0E-29 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 Gene3D G3DSA:3.40.50.2300 510 646 1.8E-33 T 14-10-2018 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 Pfam PF00072 Response regulator receiver domain 527 638 8.4E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 SUPERFAMILY SSF52172 525 648 3.42E-30 T 14-10-2018 IPR011006 CheY-like superfamily YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 SMART SM00388 282 347 5.6E-18 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 SUPERFAMILY SSF55785 143 267 1.92E-21 T 14-10-2018 IPR035965 PAS domain superfamily YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 345 8.6E-14 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_3809 9fdec9ada19f03f6bff0e2f283122f02 778 PIRSF PIRSF003182 1 778 0.0 T 14-10-2018 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB GO:0000155|GO:0000160|GO:0004673|GO:0016021 YP_1624 162d51f5d162aad413d9ac6c2975ccb5 520 Gene3D G3DSA:1.20.140.10 288 478 6.0E-64 T 14-10-2018 YP_1624 162d51f5d162aad413d9ac6c2975ccb5 520 TIGRFAM TIGR02310 HpaB-2: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component 2 520 0.0 T 14-10-2018 IPR012688 4-HPA 3-monooxygenase large component, gammaproteobacteria GO:0010124|GO:0016712|GO:0050660 KEGG: 00350+1.14.14.9|MetaCyc: PWY-7431 YP_1624 162d51f5d162aad413d9ac6c2975ccb5 520 Gene3D G3DSA:2.40.110.10 152 282 4.3E-39 T 14-10-2018 YP_1624 162d51f5d162aad413d9ac6c2975ccb5 520 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 288 489 1.4E-61 T 14-10-2018 IPR024719 HpaB/PvcC/4-BUDH C-terminal YP_1624 162d51f5d162aad413d9ac6c2975ccb5 520 Gene3D G3DSA:1.10.3140.10 14 151 9.9E-43 T 14-10-2018 YP_1624 162d51f5d162aad413d9ac6c2975ccb5 520 SUPERFAMILY SSF56645 13 282 2.33E-80 T 14-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 YP_1624 162d51f5d162aad413d9ac6c2975ccb5 520 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 15 280 7.3E-91 T 14-10-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal YP_1624 162d51f5d162aad413d9ac6c2975ccb5 520 PIRSF PIRSF000331 11 501 2.0E-191 T 14-10-2018 IPR004925 HpaB/PvcC/4-BUDH YP_1624 162d51f5d162aad413d9ac6c2975ccb5 520 PIRSF PIRSF500125 1 518 3.1E-275 T 14-10-2018 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein YP_1624 162d51f5d162aad413d9ac6c2975ccb5 520 SUPERFAMILY SSF47203 272 493 5.44E-42 T 14-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 688 704 - T 14-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 Gene3D G3DSA:3.40.1170.10 2 124 3.3E-51 T 14-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 Gene3D G3DSA:3.40.50.300 570 841 9.5E-101 T 14-10-2018 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 Gene3D G3DSA:3.30.420.110 130 265 1.7E-38 T 14-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 SUPERFAMILY SSF55271 5 116 4.45E-42 T 14-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 Pfam PF00488 MutS domain V 610 797 3.7E-88 T 14-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 Pfam PF05190 MutS family domain IV 428 517 2.0E-28 T 14-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 SUPERFAMILY SSF48334 270 566 6.41E-90 T 14-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 PIRSF PIRSF037677 200 826 9.8E-123 T 14-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 PIRSF PIRSF037677 3 192 4.1E-27 T 14-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 Pfam PF01624 MutS domain I 11 122 1.4E-40 T 14-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 SUPERFAMILY SSF53150 117 269 8.76E-43 T 14-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 SMART SM00533 286 591 6.3E-105 T 14-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 Pfam PF05188 MutS domain II 131 256 4.5E-34 T 14-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 SUPERFAMILY SSF52540 567 798 2.1E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 SMART SM00534 607 794 3.1E-122 T 14-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 Gene3D G3DSA:1.10.1420.10 387 503 1.2E-104 T 14-10-2018 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 Pfam PF05192 MutS domain III 272 559 2.5E-38 T 14-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 Gene3D G3DSA:1.10.1420.10 269 559 1.2E-104 T 14-10-2018 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 10 843 25.243 T 14-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 YP_0333 587589fd1ac3352c0a0a0ea7ca6337d1 851 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 10 848 0.0 T 14-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 YP_1618 ec705b0aa08f8f8f3973095d0a21b261 393 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 8 391 51.422 T 14-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 YP_1618 ec705b0aa08f8f8f3973095d0a21b261 393 Gene3D G3DSA:3.30.1490.20 123 196 6.1E-31 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YP_1618 ec705b0aa08f8f8f3973095d0a21b261 393 SUPERFAMILY SSF56059 113 314 8.31E-55 T 14-10-2018 YP_1618 ec705b0aa08f8f8f3973095d0a21b261 393 SUPERFAMILY SSF52440 3 112 2.45E-35 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YP_1618 ec705b0aa08f8f8f3973095d0a21b261 393 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 390 3.4E-186 T 14-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 YP_1618 ec705b0aa08f8f8f3973095d0a21b261 393 Pfam PF02222 ATP-grasp domain 123 295 3.1E-55 T 14-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YP_1618 ec705b0aa08f8f8f3973095d0a21b261 393 Gene3D G3DSA:3.30.470.20 197 390 3.2E-58 T 14-10-2018 YP_1618 ec705b0aa08f8f8f3973095d0a21b261 393 SUPERFAMILY SSF51246 319 391 1.73E-18 T 14-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 YP_1618 ec705b0aa08f8f8f3973095d0a21b261 393 Gene3D G3DSA:3.40.50.20 2 122 6.3E-53 T 14-10-2018 YP_2520 d033e8c484aea615f05c8b2f91635f80 599 TIGRFAM TIGR01393 lepA: elongation factor 4 2 594 1.1E-300 T 14-10-2018 IPR006297 Elongation factor 4 GO:0005525 YP_2520 d033e8c484aea615f05c8b2f91635f80 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 306.814 T 14-10-2018 IPR006297 Elongation factor 4 GO:0005525 YP_2520 d033e8c484aea615f05c8b2f91635f80 599 Pfam PF00009 Elongation factor Tu GTP binding domain 2 181 2.5E-52 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_2520 d033e8c484aea615f05c8b2f91635f80 599 SUPERFAMILY SSF54980 399 493 2.11E-24 T 14-10-2018 IPR035647 EF-G domain III/V-like YP_2520 d033e8c484aea615f05c8b2f91635f80 599 Pfam PF06421 GTP-binding protein LepA C-terminus 487 592 2.1E-49 T 14-10-2018 IPR013842 GTP-binding protein LepA, C-terminal YP_2520 d033e8c484aea615f05c8b2f91635f80 599 Gene3D G3DSA:3.30.70.2570 479 553 6.1E-34 T 14-10-2018 IPR038363 LepA, C-terminal domain superfamily YP_2520 d033e8c484aea615f05c8b2f91635f80 599 PRINTS PR00315 GTP-binding elongation factor signature 90 101 4.0E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_2520 d033e8c484aea615f05c8b2f91635f80 599 PRINTS PR00315 GTP-binding elongation factor signature 126 135 4.0E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_2520 d033e8c484aea615f05c8b2f91635f80 599 PRINTS PR00315 GTP-binding elongation factor signature 6 19 4.0E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_2520 d033e8c484aea615f05c8b2f91635f80 599 PRINTS PR00315 GTP-binding elongation factor signature 74 84 4.0E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_2520 d033e8c484aea615f05c8b2f91635f80 599 PRINTS PR00315 GTP-binding elongation factor signature 49 57 4.0E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_2520 d033e8c484aea615f05c8b2f91635f80 599 SUPERFAMILY SSF54980 292 370 3.02E-18 T 14-10-2018 IPR035647 EF-G domain III/V-like YP_2520 d033e8c484aea615f05c8b2f91635f80 599 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site YP_2520 d033e8c484aea615f05c8b2f91635f80 599 Gene3D G3DSA:2.40.30.10 186 285 5.6E-34 T 14-10-2018 YP_2520 d033e8c484aea615f05c8b2f91635f80 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 169 6.8E-17 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YP_2520 d033e8c484aea615f05c8b2f91635f80 599 SUPERFAMILY SSF52540 2 234 1.32E-56 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2520 d033e8c484aea615f05c8b2f91635f80 599 Pfam PF03144 Elongation factor Tu domain 2 205 275 4.1E-11 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 YP_2520 d033e8c484aea615f05c8b2f91635f80 599 Pfam PF00679 Elongation factor G C-terminus 399 482 7.1E-20 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like YP_2520 d033e8c484aea615f05c8b2f91635f80 599 Gene3D G3DSA:3.30.70.870 286 367 2.3E-35 T 14-10-2018 YP_2520 d033e8c484aea615f05c8b2f91635f80 599 Gene3D G3DSA:3.40.50.300 1 185 2.3E-70 T 14-10-2018 YP_2520 d033e8c484aea615f05c8b2f91635f80 599 Gene3D G3DSA:3.30.70.3380 368 478 3.6E-40 T 14-10-2018 YP_0002 ceefa720730dc24a1494ba524724983e 153 Gene3D G3DSA:1.10.10.10 3 57 8.0E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0002 ceefa720730dc24a1494ba524724983e 153 SUPERFAMILY SSF46785 5 67 2.04E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0002 ceefa720730dc24a1494ba524724983e 153 Pfam PF01037 Lrp/AsnC ligand binding domain 77 144 4.5E-17 T 14-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YP_0002 ceefa720730dc24a1494ba524724983e 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 8 54 3.7E-14 T 14-10-2018 YP_0002 ceefa720730dc24a1494ba524724983e 153 Gene3D G3DSA:3.30.70.920 59 141 9.0E-36 T 14-10-2018 YP_0002 ceefa720730dc24a1494ba524724983e 153 SUPERFAMILY SSF54909 68 153 2.15E-19 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel YP_0002 ceefa720730dc24a1494ba524724983e 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 25 51 - T 14-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YP_0002 ceefa720730dc24a1494ba524724983e 153 SMART SM00344 7 114 4.2E-42 T 14-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 YP_0002 ceefa720730dc24a1494ba524724983e 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 2.7E-12 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YP_0002 ceefa720730dc24a1494ba524724983e 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 2.7E-12 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YP_0002 ceefa720730dc24a1494ba524724983e 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 2.7E-12 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YP_1136 8202e3bbd323f674b62c2b3260b49cc2 666 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 31 221 9.0E-33 T 14-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 YP_1136 8202e3bbd323f674b62c2b3260b49cc2 666 SUPERFAMILY SSF52518 439 657 2.86E-54 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_1136 8202e3bbd323f674b62c2b3260b49cc2 666 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 245 378 1.1E-30 T 14-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 YP_1136 8202e3bbd323f674b62c2b3260b49cc2 666 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 498 517 - T 14-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 YP_1136 8202e3bbd323f674b62c2b3260b49cc2 666 Gene3D G3DSA:3.40.50.1220 239 415 4.9E-36 T 14-10-2018 YP_1136 8202e3bbd323f674b62c2b3260b49cc2 666 Gene3D G3DSA:3.40.50.970 434 634 1.2E-47 T 14-10-2018 YP_1136 8202e3bbd323f674b62c2b3260b49cc2 666 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 30 664 2.4E-279 T 14-10-2018 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 YP_1136 8202e3bbd323f674b62c2b3260b49cc2 666 SUPERFAMILY SSF52518 26 234 4.16E-33 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_1136 8202e3bbd323f674b62c2b3260b49cc2 666 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 462 621 1.8E-39 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 YP_1136 8202e3bbd323f674b62c2b3260b49cc2 666 SUPERFAMILY SSF52467 210 394 3.45E-41 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily YP_1136 8202e3bbd323f674b62c2b3260b49cc2 666 Gene3D G3DSA:3.40.50.970 23 234 4.4E-34 T 14-10-2018 YP_2722 d7ac21d87460bcd301116b1c3ede3a5b 296 Gene3D G3DSA:3.40.50.10330 22 284 1.1E-88 T 14-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 YP_2722 d7ac21d87460bcd301116b1c3ede3a5b 296 Hamap MF_01377 Probable lipid kinase YegS [yegS]. 3 296 46.873 T 14-10-2018 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 YP_2722 d7ac21d87460bcd301116b1c3ede3a5b 296 TIGRFAM TIGR03702 lip_kinase_YegS: lipid kinase YegS 3 295 1.7E-152 T 14-10-2018 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 YP_2722 d7ac21d87460bcd301116b1c3ede3a5b 296 SMART SM00046 3 129 5.4E-17 T 14-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 YP_2722 d7ac21d87460bcd301116b1c3ede3a5b 296 Pfam PF00781 Diacylglycerol kinase catalytic domain 4 126 8.2E-27 T 14-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 YP_2722 d7ac21d87460bcd301116b1c3ede3a5b 296 SUPERFAMILY SSF111331 1 293 1.77E-69 T 14-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily YP_2722 d7ac21d87460bcd301116b1c3ede3a5b 296 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 5 290 2.0E-92 T 14-10-2018 IPR005218 Diacylglycerol/lipid kinase YP_2722 d7ac21d87460bcd301116b1c3ede3a5b 296 Gene3D G3DSA:2.60.200.40 123 281 1.1E-88 T 14-10-2018 YP_2346 76bc47e4bfbc3e832370f7a85564d3ef 451 SUPERFAMILY SSF103473 16 428 6.67E-84 T 14-10-2018 IPR036259 MFS transporter superfamily YP_2346 76bc47e4bfbc3e832370f7a85564d3ef 451 Gene3D G3DSA:1.20.1250.20 14 216 1.3E-46 T 14-10-2018 YP_2346 76bc47e4bfbc3e832370f7a85564d3ef 451 Pfam PF07690 Major Facilitator Superfamily 30 392 1.1E-52 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_2346 76bc47e4bfbc3e832370f7a85564d3ef 451 Gene3D G3DSA:1.20.1250.20 237 429 7.1E-27 T 14-10-2018 YP_3629 65c6b06380d856a06970098d06200342 356 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 347 3.7E-113 T 14-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_3629 65c6b06380d856a06970098d06200342 356 Gene3D G3DSA:3.40.50.2000 9 161 2.2E-121 T 14-10-2018 YP_3629 65c6b06380d856a06970098d06200342 356 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 9 145 1.0E-47 T 14-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_3629 65c6b06380d856a06970098d06200342 356 Gene3D G3DSA:3.40.50.2000 162 319 2.2E-121 T 14-10-2018 YP_3629 65c6b06380d856a06970098d06200342 356 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 185 323 1.0E-33 T 14-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 YP_3629 65c6b06380d856a06970098d06200342 356 SUPERFAMILY SSF53756 6 351 5.03E-128 T 14-10-2018 YP_3629 65c6b06380d856a06970098d06200342 356 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 8 353 35.158 T 14-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_3741 a5a4adc6111358c8880a8ff9e68e2afc 233 Pfam PF10144 Bacterial virulence factor haemolysin 1 162 6.3E-68 T 14-10-2018 IPR019305 Uncharacterised protein family Smp YP_0028 14f51367caea4db5569375798f835c92 196 Pfam PF13419 Haloacid dehalogenase-like hydrolase 60 184 2.8E-9 T 14-10-2018 YP_0028 14f51367caea4db5569375798f835c92 196 Gene3D G3DSA:3.40.50.1000 4 182 1.1E-62 T 14-10-2018 IPR023214 HAD superfamily YP_0028 14f51367caea4db5569375798f835c92 196 SUPERFAMILY SSF56784 3 188 1.06E-41 T 14-10-2018 IPR036412 HAD-like superfamily YP_0028 14f51367caea4db5569375798f835c92 196 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 63 184 4.0E-17 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0028 14f51367caea4db5569375798f835c92 196 Gene3D G3DSA:1.10.150.240 16 81 1.1E-62 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YP_3587 47d3f9e6b1da54d7840e3344d20424b9 238 Pfam PF10411 Disulfide bond isomerase protein N-terminus 27 76 4.5E-15 T 14-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal YP_3587 47d3f9e6b1da54d7840e3344d20424b9 238 Gene3D G3DSA:3.40.30.10 71 230 3.4E-52 T 14-10-2018 YP_3587 47d3f9e6b1da54d7840e3344d20424b9 238 ProSitePatterns PS00194 Thioredoxin family active site. 111 129 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 YP_3587 47d3f9e6b1da54d7840e3344d20424b9 238 Pfam PF13098 Thioredoxin-like domain 104 227 3.1E-29 T 14-10-2018 IPR012336 Thioredoxin-like fold YP_3587 47d3f9e6b1da54d7840e3344d20424b9 238 SUPERFAMILY SSF52833 88 230 1.2E-42 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_3587 47d3f9e6b1da54d7840e3344d20424b9 238 Gene3D G3DSA:3.10.450.70 22 70 5.4E-24 T 14-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 YP_3587 47d3f9e6b1da54d7840e3344d20424b9 238 SUPERFAMILY SSF54423 22 80 1.44E-17 T 14-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 YP_3811 de28245aa582c643aec5b0fa9c6c82f7 1535 Pfam PF01493 GXGXG motif 1285 1468 6.0E-76 T 14-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 YP_3811 de28245aa582c643aec5b0fa9c6c82f7 1535 Gene3D G3DSA:3.60.20.10 62 594 0.0 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YP_3811 de28245aa582c643aec5b0fa9c6c82f7 1535 Pfam PF00310 Glutamine amidotransferases class-II 62 474 4.1E-176 T 14-10-2018 IPR017932 Glutamine amidotransferase type 2 domain YP_3811 de28245aa582c643aec5b0fa9c6c82f7 1535 SUPERFAMILY SSF69336 1260 1514 1.83E-89 T 14-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 YP_3811 de28245aa582c643aec5b0fa9c6c82f7 1535 SUPERFAMILY SSF51395 483 1237 1.14E-252 T 14-10-2018 YP_3811 de28245aa582c643aec5b0fa9c6c82f7 1535 Gene3D G3DSA:2.160.20.60 1246 1517 5.5E-103 T 14-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 YP_3811 de28245aa582c643aec5b0fa9c6c82f7 1535 Gene3D G3DSA:3.20.20.70 479 841 0.0 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3811 de28245aa582c643aec5b0fa9c6c82f7 1535 Pfam PF01645 Conserved region in glutamate synthase 842 1205 8.2E-158 T 14-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 YP_3811 de28245aa582c643aec5b0fa9c6c82f7 1535 SUPERFAMILY SSF56235 62 478 7.72E-150 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YP_3811 de28245aa582c643aec5b0fa9c6c82f7 1535 Gene3D G3DSA:3.20.20.70 532 1218 0.0 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3811 de28245aa582c643aec5b0fa9c6c82f7 1535 Pfam PF04898 Glutamate synthase central domain 506 786 2.1E-104 T 14-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 YP_2458 d4833c12ac4c29fad5c48c8b164aa512 163 Pfam PF06711 Protein of unknown function (DUF1198) 1 143 6.8E-65 T 14-10-2018 IPR009587 Protein of unknown function DUF1198 YP_2458 d4833c12ac4c29fad5c48c8b164aa512 163 ProDom PD093913 YICN MEMBRANE INNER EXPORTED 1 149 1.0E-76 T 14-10-2018 IPR009587 Protein of unknown function DUF1198 YP_0171 e97c854b3e7fb7d7108d06238bd36a17 191 Gene3D G3DSA:3.40.50.880 1 191 1.4E-60 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_0171 e97c854b3e7fb7d7108d06238bd36a17 191 SUPERFAMILY SSF52317 1 190 1.05E-53 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_0171 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00097 Anthranilate synthase component II signature 168 181 6.4E-37 T 14-10-2018 YP_0171 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00097 Anthranilate synthase component II signature 47 56 6.4E-37 T 14-10-2018 YP_0171 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00097 Anthranilate synthase component II signature 2 16 6.4E-37 T 14-10-2018 YP_0171 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00097 Anthranilate synthase component II signature 74 85 6.4E-37 T 14-10-2018 YP_0171 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00097 Anthranilate synthase component II signature 99 107 6.4E-37 T 14-10-2018 YP_0171 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00097 Anthranilate synthase component II signature 119 131 6.4E-37 T 14-10-2018 YP_0171 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 8.9E-6 T 14-10-2018 YP_0171 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 8.9E-6 T 14-10-2018 YP_0171 e97c854b3e7fb7d7108d06238bd36a17 191 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 190 2.0E-92 T 14-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YP_0171 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 7.9E-14 T 14-10-2018 YP_0171 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 168 181 7.9E-14 T 14-10-2018 YP_0171 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 7.9E-14 T 14-10-2018 YP_0171 e97c854b3e7fb7d7108d06238bd36a17 191 Pfam PF00117 Glutamine amidotransferase class-I 3 189 7.4E-54 T 14-10-2018 IPR017926 Glutamine amidotransferase YP_2807 f4b50371a61f0c5d0c7acd18fbbc8a69 269 PRINTS PR00395 Ribosomal protein S2 signature 115 132 3.8E-37 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_2807 f4b50371a61f0c5d0c7acd18fbbc8a69 269 PRINTS PR00395 Ribosomal protein S2 signature 186 203 3.8E-37 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_2807 f4b50371a61f0c5d0c7acd18fbbc8a69 269 PRINTS PR00395 Ribosomal protein S2 signature 203 214 3.8E-37 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_2807 f4b50371a61f0c5d0c7acd18fbbc8a69 269 PRINTS PR00395 Ribosomal protein S2 signature 34 52 3.8E-37 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_2807 f4b50371a61f0c5d0c7acd18fbbc8a69 269 PRINTS PR00395 Ribosomal protein S2 signature 65 74 3.8E-37 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_2807 f4b50371a61f0c5d0c7acd18fbbc8a69 269 PRINTS PR00395 Ribosomal protein S2 signature 224 238 3.8E-37 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_2807 f4b50371a61f0c5d0c7acd18fbbc8a69 269 Gene3D G3DSA:3.40.50.10490 36 247 3.4E-93 T 14-10-2018 YP_2807 f4b50371a61f0c5d0c7acd18fbbc8a69 269 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 31 254 7.2E-108 T 14-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2807 f4b50371a61f0c5d0c7acd18fbbc8a69 269 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 30 253 41.585 T 14-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2807 f4b50371a61f0c5d0c7acd18fbbc8a69 269 SUPERFAMILY SSF52313 34 264 1.19E-96 T 14-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily YP_2807 f4b50371a61f0c5d0c7acd18fbbc8a69 269 Pfam PF00318 Ribosomal protein S2 37 252 4.5E-94 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_2807 f4b50371a61f0c5d0c7acd18fbbc8a69 269 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 34 45 - T 14-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 YP_2807 f4b50371a61f0c5d0c7acd18fbbc8a69 269 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 186 210 - T 14-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 YP_2807 f4b50371a61f0c5d0c7acd18fbbc8a69 269 Gene3D G3DSA:1.10.287.610 131 178 3.4E-93 T 14-10-2018 YP_3288 4e66f0ee3356f4bdde52354fb4fb01c7 345 SUPERFAMILY SSF56194 205 342 7.19E-52 T 14-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3288 4e66f0ee3356f4bdde52354fb4fb01c7 345 Gene3D G3DSA:3.30.465.10 72 221 7.6E-54 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YP_3288 4e66f0ee3356f4bdde52354fb4fb01c7 345 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 8 332 6.7E-105 T 14-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3288 4e66f0ee3356f4bdde52354fb4fb01c7 345 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 209 332 2.2E-35 T 14-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3288 4e66f0ee3356f4bdde52354fb4fb01c7 345 Gene3D G3DSA:3.30.43.10 6 71 2.4E-16 T 14-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 YP_3288 4e66f0ee3356f4bdde52354fb4fb01c7 345 SUPERFAMILY SSF56176 7 194 6.07E-44 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YP_3288 4e66f0ee3356f4bdde52354fb4fb01c7 345 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 345 86.871 T 14-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3288 4e66f0ee3356f4bdde52354fb4fb01c7 345 Gene3D G3DSA:3.90.78.10 222 345 1.3E-45 T 14-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3288 4e66f0ee3356f4bdde52354fb4fb01c7 345 Pfam PF01565 FAD binding domain 22 153 3.0E-25 T 14-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 YP_3446 754c62554d940b1aa79d11fc33ca9d47 726 SUPERFAMILY SSF56935 25 724 5.13E-92 T 14-10-2018 YP_3446 754c62554d940b1aa79d11fc33ca9d47 726 Pfam PF07715 TonB-dependent Receptor Plug Domain 39 140 9.2E-18 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain YP_3446 754c62554d940b1aa79d11fc33ca9d47 726 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 709 726 - T 14-10-2018 IPR010917 TonB-dependent receptor, conserved site YP_3446 754c62554d940b1aa79d11fc33ca9d47 726 Gene3D G3DSA:2.40.170.20 151 726 2.7E-57 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_3446 754c62554d940b1aa79d11fc33ca9d47 726 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 40 726 1.6E-128 T 14-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 YP_3446 754c62554d940b1aa79d11fc33ca9d47 726 Gene3D G3DSA:2.170.130.10 24 146 3.8E-22 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YP_3446 754c62554d940b1aa79d11fc33ca9d47 726 Pfam PF00593 TonB dependent receptor 233 723 3.7E-33 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YP_0574 8eb153cfb823fe749ec91f290ba039a2 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 2.3E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_0574 8eb153cfb823fe749ec91f290ba039a2 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 2.3E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_0574 8eb153cfb823fe749ec91f290ba039a2 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 2.3E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_0574 8eb153cfb823fe749ec91f290ba039a2 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 2.3E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_0574 8eb153cfb823fe749ec91f290ba039a2 390 Pfam PF01926 50S ribosome-binding GTPase 161 284 1.0E-23 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_0574 8eb153cfb823fe749ec91f290ba039a2 390 SUPERFAMILY SSF82051 2 157 1.31E-56 T 14-10-2018 IPR036726 GTP1/OBG domain superfamily YP_0574 8eb153cfb823fe749ec91f290ba039a2 390 Hamap MF_01454 GTPase Obg [obg]. 2 333 48.084 T 14-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 YP_0574 8eb153cfb823fe749ec91f290ba039a2 390 PIRSF PIRSF002401 1 375 1.3E-139 T 14-10-2018 IPR035101 GTP-binding protein, Obg-type YP_0574 8eb153cfb823fe749ec91f290ba039a2 390 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 2.8E-146 T 14-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 YP_0574 8eb153cfb823fe749ec91f290ba039a2 390 Pfam PF01018 GTP1/OBG 4 156 6.7E-58 T 14-10-2018 IPR006169 GTP1/OBG domain YP_0574 8eb153cfb823fe749ec91f290ba039a2 390 Gene3D G3DSA:3.40.50.300 159 339 1.3E-52 T 14-10-2018 YP_0574 8eb153cfb823fe749ec91f290ba039a2 390 SUPERFAMILY SSF52540 151 339 3.54E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0574 8eb153cfb823fe749ec91f290ba039a2 390 Gene3D G3DSA:2.70.210.12 1 158 5.7E-62 T 14-10-2018 IPR036726 GTP1/OBG domain superfamily YP_0574 8eb153cfb823fe749ec91f290ba039a2 390 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 14-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 YP_3687 04bde8608584e5d0619000c5f6eaee0e 272 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 41 68 - T 14-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 YP_3687 04bde8608584e5d0619000c5f6eaee0e 272 SUPERFAMILY SSF53335 17 265 5.1E-78 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3687 04bde8608584e5d0619000c5f6eaee0e 272 Gene3D G3DSA:3.40.50.150 1 200 1.0E-67 T 14-10-2018 YP_3687 04bde8608584e5d0619000c5f6eaee0e 272 Gene3D G3DSA:1.10.8.100 201 268 1.8E-28 T 14-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 YP_3687 04bde8608584e5d0619000c5f6eaee0e 272 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 11 264 9.6E-89 T 14-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 YP_3687 04bde8608584e5d0619000c5f6eaee0e 272 SMART SM00650 25 198 1.1E-82 T 14-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 YP_3687 04bde8608584e5d0619000c5f6eaee0e 272 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 9 265 55.96 T 14-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 YP_3687 04bde8608584e5d0619000c5f6eaee0e 272 Pfam PF00398 Ribosomal RNA adenine dimethylase 11 264 3.4E-79 T 14-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm YP_0225 58c42f57a3daae6651d63045c445eb25 59 PIRSF PIRSF002211 1 59 3.4E-28 T 14-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0225 58c42f57a3daae6651d63045c445eb25 59 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 5 59 2.5E-26 T 14-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0225 58c42f57a3daae6651d63045c445eb25 59 Pfam PF00327 Ribosomal protein L30p/L7e 5 55 8.8E-20 T 14-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain YP_0225 58c42f57a3daae6651d63045c445eb25 59 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 22.06 T 14-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0225 58c42f57a3daae6651d63045c445eb25 59 ProSitePatterns PS00634 Ribosomal protein L30 signature. 23 55 - T 14-10-2018 IPR018038 Ribosomal protein L30, conserved site YP_0225 58c42f57a3daae6651d63045c445eb25 59 Gene3D G3DSA:3.30.1390.20 1 59 7.9E-27 T 14-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily YP_0225 58c42f57a3daae6651d63045c445eb25 59 SUPERFAMILY SSF55129 3 59 1.7E-21 T 14-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily YP_2187 f1c8f63d319661d0bbcb8f7cedb2f705 410 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 11 409 1.2E-180 T 14-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 YP_2187 f1c8f63d319661d0bbcb8f7cedb2f705 410 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 221 240 - T 14-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YP_2187 f1c8f63d319661d0bbcb8f7cedb2f705 410 SUPERFAMILY SSF53383 8 405 1.03E-125 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_2187 f1c8f63d319661d0bbcb8f7cedb2f705 410 Gene3D G3DSA:3.90.1150.10 12 402 8.8E-170 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_2187 f1c8f63d319661d0bbcb8f7cedb2f705 410 Pfam PF00266 Aminotransferase class-V 29 398 8.7E-159 T 14-10-2018 IPR000192 Aminotransferase class V domain YP_2187 f1c8f63d319661d0bbcb8f7cedb2f705 410 Gene3D G3DSA:3.40.640.10 40 301 8.8E-170 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_2187 f1c8f63d319661d0bbcb8f7cedb2f705 410 Hamap MF_01831 Cysteine desulfurase [sufS]. 5 410 72.925 T 14-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 YP_2585 9335809a3b1bc773822cb78786fb8f88 533 Gene3D G3DSA:1.10.3720.10 32 269 1.3E-41 T 14-10-2018 IPR035906 MetI-like superfamily YP_2585 9335809a3b1bc773822cb78786fb8f88 533 SUPERFAMILY SSF161098 291 524 2.52E-35 T 14-10-2018 IPR035906 MetI-like superfamily YP_2585 9335809a3b1bc773822cb78786fb8f88 533 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 350 529 1.3E-17 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2585 9335809a3b1bc773822cb78786fb8f88 533 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 259 9.4E-7 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2585 9335809a3b1bc773822cb78786fb8f88 533 Gene3D G3DSA:1.10.3720.10 281 531 9.3E-30 T 14-10-2018 IPR035906 MetI-like superfamily YP_2585 9335809a3b1bc773822cb78786fb8f88 533 SUPERFAMILY SSF161098 33 259 7.41E-37 T 14-10-2018 IPR035906 MetI-like superfamily YP_3364 540446530cb012e7941ed7acb9a7e194 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 307 3.0E-39 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_3364 540446530cb012e7941ed7acb9a7e194 315 SUPERFAMILY SSF161098 89 307 8.5E-22 T 14-10-2018 IPR035906 MetI-like superfamily YP_3646 5fc27ab3e57a84d1e0135ded75f2cae1 593 SUPERFAMILY SSF52518 17 198 5.05E-67 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_3646 5fc27ab3e57a84d1e0135ded75f2cae1 593 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 449 468 - T 14-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 YP_3646 5fc27ab3e57a84d1e0135ded75f2cae1 593 Gene3D G3DSA:3.40.50.970 15 198 1.3E-72 T 14-10-2018 YP_3646 5fc27ab3e57a84d1e0135ded75f2cae1 593 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 214 348 1.1E-45 T 14-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 YP_3646 5fc27ab3e57a84d1e0135ded75f2cae1 593 SUPERFAMILY SSF52467 206 380 3.6E-63 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily YP_3646 5fc27ab3e57a84d1e0135ded75f2cae1 593 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 23 189 5.1E-60 T 14-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 YP_3646 5fc27ab3e57a84d1e0135ded75f2cae1 593 SUPERFAMILY SSF52518 386 590 5.54E-69 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_3646 5fc27ab3e57a84d1e0135ded75f2cae1 593 Gene3D G3DSA:3.40.50.970 382 580 2.4E-67 T 14-10-2018 YP_3646 5fc27ab3e57a84d1e0135ded75f2cae1 593 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 412 564 1.9E-49 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 YP_3646 5fc27ab3e57a84d1e0135ded75f2cae1 593 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 22 588 1.0E-277 T 14-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 YP_3646 5fc27ab3e57a84d1e0135ded75f2cae1 593 Gene3D G3DSA:3.40.50.1220 208 378 1.6E-60 T 14-10-2018 YP_2378 d178f931fdec855170e9f3736bcaefbf 717 SUPERFAMILY SSF75138 229 353 1.57E-25 T 14-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily YP_2378 d178f931fdec855170e9f3736bcaefbf 717 SUPERFAMILY SSF53659 392 709 1.89E-93 T 14-10-2018 YP_2378 d178f931fdec855170e9f3736bcaefbf 717 Gene3D G3DSA:3.40.50.10950 398 708 1.6E-135 T 14-10-2018 YP_2378 d178f931fdec855170e9f3736bcaefbf 717 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 406 706 5.9E-136 T 14-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 YP_2378 d178f931fdec855170e9f3736bcaefbf 717 Pfam PF01515 Phosphate acetyl/butaryl transferase 391 706 1.1E-127 T 14-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 YP_2378 d178f931fdec855170e9f3736bcaefbf 717 Pfam PF13500 AAA domain 3 229 2.2E-51 T 14-10-2018 YP_2378 d178f931fdec855170e9f3736bcaefbf 717 Gene3D G3DSA:3.40.50.300 5 207 2.9E-11 T 14-10-2018 YP_2378 d178f931fdec855170e9f3736bcaefbf 717 Gene3D G3DSA:3.40.1390.20 225 365 1.2E-14 T 14-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily YP_2378 d178f931fdec855170e9f3736bcaefbf 717 PIRSF PIRSF006107 1 714 0.0 T 14-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 YP_2378 d178f931fdec855170e9f3736bcaefbf 717 Pfam PF07085 DRTGG domain 233 344 6.4E-29 T 14-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 YP_2378 d178f931fdec855170e9f3736bcaefbf 717 Gene3D G3DSA:3.40.50.10750 529 682 1.6E-135 T 14-10-2018 YP_2378 d178f931fdec855170e9f3736bcaefbf 717 SUPERFAMILY SSF52540 3 240 9.03E-28 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0200 8fe87bc8d61e31dd523adc4cb6199cb6 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 14-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0200 8fe87bc8d61e31dd523adc4cb6199cb6 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 3.6E-65 T 14-10-2018 IPR023798 Ribosomal protein S7 domain YP_0200 8fe87bc8d61e31dd523adc4cb6199cb6 156 PIRSF PIRSF002122 3 156 2.2E-63 T 14-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 YP_0200 8fe87bc8d61e31dd523adc4cb6199cb6 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.144 T 14-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 YP_0200 8fe87bc8d61e31dd523adc4cb6199cb6 156 Gene3D G3DSA:1.10.455.10 2 155 5.6E-64 T 14-10-2018 IPR036823 Ribosomal protein S7 domain superfamily YP_0200 8fe87bc8d61e31dd523adc4cb6199cb6 156 SUPERFAMILY SSF47973 6 149 7.59E-60 T 14-10-2018 IPR036823 Ribosomal protein S7 domain superfamily YP_0200 8fe87bc8d61e31dd523adc4cb6199cb6 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 3.4E-71 T 14-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 YP_2491 b70e6e99a3c9becba31a0c12ed6bd55c 209 Gene3D G3DSA:3.40.50.2300 1 105 2.7E-27 T 14-10-2018 YP_2491 b70e6e99a3c9becba31a0c12ed6bd55c 209 Gene3D G3DSA:1.10.10.10 106 209 6.5E-30 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2491 b70e6e99a3c9becba31a0c12ed6bd55c 209 SMART SM00448 1 96 1.7E-19 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_2491 b70e6e99a3c9becba31a0c12ed6bd55c 209 SUPERFAMILY SSF52172 2 162 1.94E-30 T 14-10-2018 IPR011006 CheY-like superfamily YP_2491 b70e6e99a3c9becba31a0c12ed6bd55c 209 Pfam PF00486 Transcriptional regulatory protein, C terminal 131 207 6.3E-22 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_2491 b70e6e99a3c9becba31a0c12ed6bd55c 209 SMART SM00862 131 207 1.2E-21 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_2491 b70e6e99a3c9becba31a0c12ed6bd55c 209 Pfam PF00072 Response regulator receiver domain 4 97 3.2E-21 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1095 b386f7fedaedb96c52343a36b615c19d 157 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 40 144 4.1E-35 T 14-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 YP_1095 b386f7fedaedb96c52343a36b615c19d 157 Pfam PF02130 Uncharacterized protein family UPF0054 21 143 3.8E-37 T 14-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 YP_1095 b386f7fedaedb96c52343a36b615c19d 157 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 5 148 23.648 T 14-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 YP_1095 b386f7fedaedb96c52343a36b615c19d 157 Gene3D G3DSA:3.40.390.30 1 155 9.6E-57 T 14-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 YP_1095 b386f7fedaedb96c52343a36b615c19d 157 SUPERFAMILY SSF55486 4 151 3.17E-48 T 14-10-2018 YP_1095 b386f7fedaedb96c52343a36b615c19d 157 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 114 124 - T 14-10-2018 IPR020549 Endoribonuclease YbeY, conserved site YP_2778 5d4dacb53db7ad6f68c76f01b9c9add5 271 Gene3D G3DSA:3.40.190.10 115 221 2.6E-101 T 14-10-2018 YP_2778 5d4dacb53db7ad6f68c76f01b9c9add5 271 Pfam PF03180 NLPA lipoprotein 33 271 7.3E-99 T 14-10-2018 IPR004872 Lipoprotein NlpA family YP_2778 5d4dacb53db7ad6f68c76f01b9c9add5 271 PIRSF PIRSF002854 1 271 2.1E-104 T 14-10-2018 IPR004872 Lipoprotein NlpA family YP_2778 5d4dacb53db7ad6f68c76f01b9c9add5 271 Gene3D G3DSA:3.40.190.10 34 265 2.6E-101 T 14-10-2018 YP_2778 5d4dacb53db7ad6f68c76f01b9c9add5 271 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 14 271 1.5E-144 T 14-10-2018 IPR004872 Lipoprotein NlpA family YP_2778 5d4dacb53db7ad6f68c76f01b9c9add5 271 SUPERFAMILY SSF53850 33 271 2.42E-83 T 14-10-2018 YP_0173 49d328bc636fc7bce30edeb8b0ca63f9 706 Pfam PF12805 FUSC-like inner membrane protein yccS 64 332 2.7E-68 T 14-10-2018 IPR032692 Integral membrane protein YccS, N-terminal YP_0173 49d328bc636fc7bce30edeb8b0ca63f9 706 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 13 686 3.1E-156 T 14-10-2018 IPR010020 Integral membrane protein, YccS/YhfK YP_0173 49d328bc636fc7bce30edeb8b0ca63f9 706 Pfam PF13515 Fusaric acid resistance protein-like 379 499 6.0E-20 T 14-10-2018 YP_3978 3622b7a5149f9bec5570c1293dfef39b 387 Gene3D G3DSA:1.10.1040.10 207 382 1.6E-70 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YP_3978 3622b7a5149f9bec5570c1293dfef39b 387 SUPERFAMILY SSF48179 204 384 1.26E-46 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_3978 3622b7a5149f9bec5570c1293dfef39b 387 Hamap MF_00196 Mannitol-1-phosphate 5-dehydrogenase [mtlD]. 1 378 40.66 T 14-10-2018 IPR023028 Mannitol-1-phosphate 5-dehydrogenase GO:0008926|GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YP_3978 3622b7a5149f9bec5570c1293dfef39b 387 Gene3D G3DSA:3.40.50.720 1 205 1.9E-81 T 14-10-2018 YP_3978 3622b7a5149f9bec5570c1293dfef39b 387 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 150 162 - T 14-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YP_3978 3622b7a5149f9bec5570c1293dfef39b 387 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 1 123 2.7E-25 T 14-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 YP_3978 3622b7a5149f9bec5570c1293dfef39b 387 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 148 373 6.3E-66 T 14-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 YP_3978 3622b7a5149f9bec5570c1293dfef39b 387 PRINTS PR00084 Mannitol dehydrogenase signature 114 127 1.3E-16 T 14-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YP_3978 3622b7a5149f9bec5570c1293dfef39b 387 PRINTS PR00084 Mannitol dehydrogenase signature 3 13 1.3E-16 T 14-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YP_3978 3622b7a5149f9bec5570c1293dfef39b 387 PRINTS PR00084 Mannitol dehydrogenase signature 170 185 1.3E-16 T 14-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YP_3978 3622b7a5149f9bec5570c1293dfef39b 387 PRINTS PR00084 Mannitol dehydrogenase signature 150 163 1.3E-16 T 14-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YP_3978 3622b7a5149f9bec5570c1293dfef39b 387 SUPERFAMILY SSF51735 1 203 7.34E-46 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3888 20e0a350306575ae2db63151ff35eccd 449 SUPERFAMILY SSF56059 83 347 5.05E-69 T 14-10-2018 YP_3888 20e0a350306575ae2db63151ff35eccd 449 Gene3D G3DSA:3.30.470.20 86 433 1.5E-157 T 14-10-2018 YP_3888 20e0a350306575ae2db63151ff35eccd 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 447 4.2E-249 T 14-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 YP_3888 20e0a350306575ae2db63151ff35eccd 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 323 9.2E-85 T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YP_3888 20e0a350306575ae2db63151ff35eccd 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.4E-43 T 14-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 YP_3888 20e0a350306575ae2db63151ff35eccd 449 Gene3D G3DSA:3.30.1490.20 131 203 1.5E-157 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YP_3888 20e0a350306575ae2db63151ff35eccd 449 SUPERFAMILY SSF51246 331 444 1.31E-43 T 14-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 YP_3888 20e0a350306575ae2db63151ff35eccd 449 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 1.3E-38 T 14-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 YP_3888 20e0a350306575ae2db63151ff35eccd 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YP_3888 20e0a350306575ae2db63151ff35eccd 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YP_3888 20e0a350306575ae2db63151ff35eccd 449 SMART SM00878 336 441 3.2E-65 T 14-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 YP_3888 20e0a350306575ae2db63151ff35eccd 449 Gene3D G3DSA:3.40.50.20 1 85 5.2E-34 T 14-10-2018 YP_3888 20e0a350306575ae2db63151ff35eccd 449 SUPERFAMILY SSF52440 1 113 3.74E-46 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YP_3638 6f05baa921ff4b44c7b7f96455005d0f 152 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 151 1.3E-63 T 14-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 YP_3638 6f05baa921ff4b44c7b7f96455005d0f 152 Gene3D G3DSA:2.40.330.20 1 147 2.2E-43 T 14-10-2018 IPR038619 MraZ superfamily YP_3638 6f05baa921ff4b44c7b7f96455005d0f 152 Pfam PF02381 MraZ protein, putative antitoxin-like 1 75 2.6E-24 T 14-10-2018 IPR020603 MraZ domain YP_3638 6f05baa921ff4b44c7b7f96455005d0f 152 Pfam PF02381 MraZ protein, putative antitoxin-like 77 139 2.0E-20 T 14-10-2018 IPR020603 MraZ domain YP_3638 6f05baa921ff4b44c7b7f96455005d0f 152 SUPERFAMILY SSF89447 1 138 4.5E-46 T 14-10-2018 IPR037914 SpoVT-AbrB domain superfamily YP_3638 6f05baa921ff4b44c7b7f96455005d0f 152 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 141 9.0E-80 T 14-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 YP_3638 6f05baa921ff4b44c7b7f96455005d0f 152 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 152 57.829 T 14-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 YP_1262 fedc5990d0d0ae34d2cfbc3ba9503d93 408 Pfam PF13416 Bacterial extracellular solute-binding protein 85 373 2.3E-32 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein YP_1262 fedc5990d0d0ae34d2cfbc3ba9503d93 408 SUPERFAMILY SSF53850 68 407 5.02E-102 T 14-10-2018 YP_1262 fedc5990d0d0ae34d2cfbc3ba9503d93 408 Gene3D G3DSA:3.40.190.10 70 376 9.9E-142 T 14-10-2018 YP_1262 fedc5990d0d0ae34d2cfbc3ba9503d93 408 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 257 276 5.4E-75 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YP_1262 fedc5990d0d0ae34d2cfbc3ba9503d93 408 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 352 378 5.4E-75 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YP_1262 fedc5990d0d0ae34d2cfbc3ba9503d93 408 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 116 130 5.4E-75 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YP_1262 fedc5990d0d0ae34d2cfbc3ba9503d93 408 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 89 110 5.4E-75 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YP_1262 fedc5990d0d0ae34d2cfbc3ba9503d93 408 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 73 89 5.4E-75 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YP_1262 fedc5990d0d0ae34d2cfbc3ba9503d93 408 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 196 210 5.4E-75 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YP_1262 fedc5990d0d0ae34d2cfbc3ba9503d93 408 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 132 145 5.4E-75 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YP_1262 fedc5990d0d0ae34d2cfbc3ba9503d93 408 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 219 238 5.4E-75 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YP_1262 fedc5990d0d0ae34d2cfbc3ba9503d93 408 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 307 326 5.4E-75 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YP_1262 fedc5990d0d0ae34d2cfbc3ba9503d93 408 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 165 181 5.4E-75 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YP_1262 fedc5990d0d0ae34d2cfbc3ba9503d93 408 Gene3D G3DSA:3.40.190.10 174 402 9.9E-142 T 14-10-2018 YP_1262 fedc5990d0d0ae34d2cfbc3ba9503d93 408 PIRSF PIRSF019574 40 408 6.4E-142 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 253 279 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 Pfam PF00140 Sigma-70 factor, region 1.2 15 40 4.4E-7 T 14-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 Gene3D G3DSA:1.20.120.1810 2 122 8.5E-27 T 14-10-2018 YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 285 54.404 T 14-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 PIRSF PIRSF000770 5 285 5.2E-32 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 Pfam PF04542 Sigma-70 region 2 53 122 3.3E-16 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 280 3.6E-35 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 Pfam PF04545 Sigma-70, region 4 229 280 3.2E-16 T 14-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 Gene3D G3DSA:1.10.10.10 214 284 3.3E-16 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 SUPERFAMILY SSF88659 200 284 6.35E-19 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 SUPERFAMILY SSF88946 12 122 2.98E-39 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 14 284 1.1E-129 T 14-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 PRINTS PR00046 Major sigma-70 factor signature 77 90 3.9E-19 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 PRINTS PR00046 Major sigma-70 factor signature 253 268 3.9E-19 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 PRINTS PR00046 Major sigma-70 factor signature 233 245 3.9E-19 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_3238 e6c92e9866a4ea59bb415044653d9d00 285 PRINTS PR00046 Major sigma-70 factor signature 268 279 3.9E-19 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_0616 9f72aec4dfe5a5eccfc943039586a3aa 141 PIRSF PIRSF009554 1 141 1.8E-64 T 14-10-2018 IPR011194 Uncharacterised protein family UPF0306 YP_0616 9f72aec4dfe5a5eccfc943039586a3aa 141 Hamap MF_00764 UPF0306 protein YhbP [yhbP]. 1 137 35.587 T 14-10-2018 IPR011194 Uncharacterised protein family UPF0306 YP_0616 9f72aec4dfe5a5eccfc943039586a3aa 141 Gene3D G3DSA:2.30.110.10 2 136 2.8E-10 T 14-10-2018 IPR012349 FMN-binding split barrel GO:0048037 YP_0616 9f72aec4dfe5a5eccfc943039586a3aa 141 SUPERFAMILY SSF50475 4 136 1.75E-12 T 14-10-2018 YP_2840 d5d23a65b8e0524105aec0dd19e19545 640 Pfam PF00263 Bacterial type II and III secretion system protein 416 581 3.4E-50 T 14-10-2018 IPR004846 Type II/III secretion system GO:0009306 YP_2840 d5d23a65b8e0524105aec0dd19e19545 640 Gene3D G3DSA:3.30.1370.120 267 345 3.2E-14 T 14-10-2018 IPR038591 NolW-like superfamily YP_2840 d5d23a65b8e0524105aec0dd19e19545 640 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 34 590 1.3E-142 T 14-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 YP_2840 d5d23a65b8e0524105aec0dd19e19545 640 Pfam PF03958 Bacterial type II/III secretion system short domain 196 265 5.7E-9 T 14-10-2018 IPR005644 NolW-like YP_2840 d5d23a65b8e0524105aec0dd19e19545 640 Pfam PF03958 Bacterial type II/III secretion system short domain 131 191 7.5E-11 T 14-10-2018 IPR005644 NolW-like YP_2840 d5d23a65b8e0524105aec0dd19e19545 640 Pfam PF03958 Bacterial type II/III secretion system short domain 270 347 1.9E-14 T 14-10-2018 IPR005644 NolW-like YP_2840 d5d23a65b8e0524105aec0dd19e19545 640 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 526 559 - T 14-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 YP_2840 d5d23a65b8e0524105aec0dd19e19545 640 Gene3D G3DSA:3.30.1370.120 194 262 1.4E-13 T 14-10-2018 IPR038591 NolW-like superfamily YP_2840 d5d23a65b8e0524105aec0dd19e19545 640 Gene3D G3DSA:3.30.1370.120 27 190 6.0E-48 T 14-10-2018 IPR038591 NolW-like superfamily YP_2840 d5d23a65b8e0524105aec0dd19e19545 640 PRINTS PR00811 Bacterial general secretion pathway protein D signature 412 436 2.1E-35 T 14-10-2018 IPR001775 GspD/PilQ family YP_2840 d5d23a65b8e0524105aec0dd19e19545 640 PRINTS PR00811 Bacterial general secretion pathway protein D signature 568 582 2.1E-35 T 14-10-2018 IPR001775 GspD/PilQ family YP_2840 d5d23a65b8e0524105aec0dd19e19545 640 PRINTS PR00811 Bacterial general secretion pathway protein D signature 447 457 2.1E-35 T 14-10-2018 IPR001775 GspD/PilQ family YP_2840 d5d23a65b8e0524105aec0dd19e19545 640 PRINTS PR00811 Bacterial general secretion pathway protein D signature 347 357 2.1E-35 T 14-10-2018 IPR001775 GspD/PilQ family YP_2840 d5d23a65b8e0524105aec0dd19e19545 640 PRINTS PR00811 Bacterial general secretion pathway protein D signature 545 563 2.1E-35 T 14-10-2018 IPR001775 GspD/PilQ family YP_3280 7177ff977c1fb659eda0b319ad3decf2 247 PRINTS PR00410 Phenol hydroxylase reductase family signature 105 114 3.0E-12 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YP_3280 7177ff977c1fb659eda0b319ad3decf2 247 PRINTS PR00410 Phenol hydroxylase reductase family signature 121 140 3.0E-12 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YP_3280 7177ff977c1fb659eda0b319ad3decf2 247 PRINTS PR00410 Phenol hydroxylase reductase family signature 45 57 3.0E-12 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YP_3280 7177ff977c1fb659eda0b319ad3decf2 247 PRINTS PR00410 Phenol hydroxylase reductase family signature 146 155 3.0E-12 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YP_3280 7177ff977c1fb659eda0b319ad3decf2 247 PRINTS PR00410 Phenol hydroxylase reductase family signature 61 68 3.0E-12 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YP_3280 7177ff977c1fb659eda0b319ad3decf2 247 SUPERFAMILY SSF52343 114 245 2.1E-34 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_3280 7177ff977c1fb659eda0b319ad3decf2 247 Pfam PF00970 Oxidoreductase FAD-binding domain 20 109 1.7E-4 T 14-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 YP_3280 7177ff977c1fb659eda0b319ad3decf2 247 SUPERFAMILY SSF63380 17 111 1.68E-20 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YP_3280 7177ff977c1fb659eda0b319ad3decf2 247 Gene3D G3DSA:3.40.50.80 113 247 4.5E-28 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_3280 7177ff977c1fb659eda0b319ad3decf2 247 Pfam PF00175 Oxidoreductase NAD-binding domain 122 225 1.7E-21 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 YP_3280 7177ff977c1fb659eda0b319ad3decf2 247 Gene3D G3DSA:2.40.30.10 16 112 1.6E-23 T 14-10-2018 YP_2377 ed14ca7944c267764464ac55d14eb261 400 Pfam PF00871 Acetokinase family 6 393 3.4E-175 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YP_2377 ed14ca7944c267764464ac55d14eb261 400 SUPERFAMILY SSF53067 4 199 3.17E-63 T 14-10-2018 YP_2377 ed14ca7944c267764464ac55d14eb261 400 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 6 17 - T 14-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YP_2377 ed14ca7944c267764464ac55d14eb261 400 Gene3D G3DSA:3.30.420.40 3 198 1.4E-77 T 14-10-2018 YP_2377 ed14ca7944c267764464ac55d14eb261 400 PRINTS PR00471 Acetate kinase family signature 380 392 1.6E-48 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YP_2377 ed14ca7944c267764464ac55d14eb261 400 PRINTS PR00471 Acetate kinase family signature 6 17 1.6E-48 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YP_2377 ed14ca7944c267764464ac55d14eb261 400 PRINTS PR00471 Acetate kinase family signature 325 341 1.6E-48 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YP_2377 ed14ca7944c267764464ac55d14eb261 400 PRINTS PR00471 Acetate kinase family signature 206 227 1.6E-48 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YP_2377 ed14ca7944c267764464ac55d14eb261 400 PRINTS PR00471 Acetate kinase family signature 176 189 1.6E-48 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YP_2377 ed14ca7944c267764464ac55d14eb261 400 PRINTS PR00471 Acetate kinase family signature 302 315 1.6E-48 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YP_2377 ed14ca7944c267764464ac55d14eb261 400 Hamap MF_00020 Acetate kinase [ackA]. 1 400 188.838 T 14-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YP_2377 ed14ca7944c267764464ac55d14eb261 400 PIRSF PIRSF000722 2 400 1.8E-144 T 14-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YP_2377 ed14ca7944c267764464ac55d14eb261 400 Gene3D G3DSA:3.30.420.40 199 400 7.1E-87 T 14-10-2018 YP_2377 ed14ca7944c267764464ac55d14eb261 400 TIGRFAM TIGR00016 ackA: acetate kinase 1 399 8.9E-184 T 14-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YP_2377 ed14ca7944c267764464ac55d14eb261 400 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 206 223 - T 14-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YP_2377 ed14ca7944c267764464ac55d14eb261 400 SUPERFAMILY SSF53067 160 398 6.11E-85 T 14-10-2018 YP_1787 740fba51197e3217828d543ad964ab5d 77 Pfam PF10781 Dextransucrase DSRB 15 74 6.7E-38 T 14-10-2018 IPR019717 Dextransucrase DSRB YP_1787 740fba51197e3217828d543ad964ab5d 77 Hamap MF_01549 Protein DsrB [dsrB]. 15 76 27.389 T 14-10-2018 IPR019717 Dextransucrase DSRB YP_3830 5f27a101a37945e59adc77b280409d37 272 Pfam PF00005 ABC transporter 29 175 4.2E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3830 5f27a101a37945e59adc77b280409d37 272 SMART SM00382 36 233 3.2E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3830 5f27a101a37945e59adc77b280409d37 272 Gene3D G3DSA:3.40.50.300 8 252 5.1E-63 T 14-10-2018 YP_3830 5f27a101a37945e59adc77b280409d37 272 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3830 5f27a101a37945e59adc77b280409d37 272 SUPERFAMILY SSF52540 11 240 4.44E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0960 d710080f9de6837c0c536819675a6811 571 SUPERFAMILY SSF55103 276 568 3.27E-113 T 14-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 YP_0960 d710080f9de6837c0c536819675a6811 571 Pfam PF01565 FAD binding domain 48 173 2.9E-8 T 14-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 YP_0960 d710080f9de6837c0c536819675a6811 571 Gene3D G3DSA:3.30.1370.20 436 520 1.2E-40 T 14-10-2018 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 YP_0960 d710080f9de6837c0c536819675a6811 571 Pfam PF09330 D-lactate dehydrogenase, membrane binding 279 568 2.6E-145 T 14-10-2018 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 YP_0960 d710080f9de6837c0c536819675a6811 571 Hamap MF_02092 Quinone-dependent D-lactate dehydrogenase [dld]. 11 569 58.678 T 14-10-2018 IPR012256 D-lactate dehydrogenase GO:0005887|GO:0016901|GO:0019516|GO:0022904|GO:0050660 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 YP_0960 d710080f9de6837c0c536819675a6811 571 Gene3D G3DSA:3.30.465.10 107 269 2.2E-76 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YP_0960 d710080f9de6837c0c536819675a6811 571 Gene3D G3DSA:3.30.43.10 6 104 7.5E-11 T 14-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 YP_0960 d710080f9de6837c0c536819675a6811 571 Gene3D G3DSA:3.30.70.610 270 347 4.8E-18 T 14-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 YP_0960 d710080f9de6837c0c536819675a6811 571 Gene3D G3DSA:3.30.70.610 353 435 3.1E-18 T 14-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 YP_0960 d710080f9de6837c0c536819675a6811 571 SUPERFAMILY SSF56176 13 272 8.18E-71 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YP_0960 d710080f9de6837c0c536819675a6811 571 PIRSF PIRSF000101 5 570 1.2E-289 T 14-10-2018 IPR012256 D-lactate dehydrogenase GO:0005887|GO:0016901|GO:0019516|GO:0022904|GO:0050660 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 YP_3631 38efc4b3d343a3763e6a0b0214b1af35 438 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 8 435 8.0E-123 T 14-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YP_3631 38efc4b3d343a3763e6a0b0214b1af35 438 SUPERFAMILY SSF53244 299 437 4.58E-48 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YP_3631 38efc4b3d343a3763e6a0b0214b1af35 438 Pfam PF08245 Mur ligase middle domain 110 280 7.5E-26 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 YP_3631 38efc4b3d343a3763e6a0b0214b1af35 438 Pfam PF02875 Mur ligase family, glutamate ligase domain 301 356 9.0E-8 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 YP_3631 38efc4b3d343a3763e6a0b0214b1af35 438 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 437 34.209 T 14-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YP_3631 38efc4b3d343a3763e6a0b0214b1af35 438 Gene3D G3DSA:3.90.190.20 300 434 1.1E-43 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YP_3631 38efc4b3d343a3763e6a0b0214b1af35 438 Gene3D G3DSA:3.40.1190.10 94 299 1.4E-78 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YP_3631 38efc4b3d343a3763e6a0b0214b1af35 438 Gene3D G3DSA:3.40.50.720 2 93 6.8E-26 T 14-10-2018 YP_3631 38efc4b3d343a3763e6a0b0214b1af35 438 SUPERFAMILY SSF51984 3 94 8.24E-25 T 14-10-2018 YP_3631 38efc4b3d343a3763e6a0b0214b1af35 438 SUPERFAMILY SSF53623 95 297 7.98E-56 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YP_1671 e59bcde92d75b958f5939152211e3369 298 Gene3D G3DSA:1.10.10.10 3 91 1.3E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1671 e59bcde92d75b958f5939152211e3369 298 Pfam PF03466 LysR substrate binding domain 95 293 1.6E-42 T 14-10-2018 IPR005119 LysR, substrate-binding YP_1671 e59bcde92d75b958f5939152211e3369 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 3.9E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_1671 e59bcde92d75b958f5939152211e3369 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 3.9E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_1671 e59bcde92d75b958f5939152211e3369 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 3.9E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_1671 e59bcde92d75b958f5939152211e3369 298 SUPERFAMILY SSF46785 5 87 1.36E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1671 e59bcde92d75b958f5939152211e3369 298 Gene3D G3DSA:3.40.190.10 94 293 1.6E-63 T 14-10-2018 YP_1671 e59bcde92d75b958f5939152211e3369 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 5.3E-21 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_1671 e59bcde92d75b958f5939152211e3369 298 Gene3D G3DSA:3.40.190.10 170 275 1.6E-63 T 14-10-2018 YP_1671 e59bcde92d75b958f5939152211e3369 298 SUPERFAMILY SSF53850 97 293 2.17E-36 T 14-10-2018 YP_2560 695d8974489163404315b1553d6966d8 107 Gene3D G3DSA:2.60.300.12 2 107 6.5E-37 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 YP_2560 695d8974489163404315b1553d6966d8 107 SUPERFAMILY SSF89360 1 95 2.75E-33 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 YP_2560 695d8974489163404315b1553d6966d8 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 9.6E-26 T 14-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 YP_2560 695d8974489163404315b1553d6966d8 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 14-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 YP_2560 695d8974489163404315b1553d6966d8 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 5.6E-58 T 14-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 YP_2560 695d8974489163404315b1553d6966d8 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 5.5E-37 T 14-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 YP_2560 695d8974489163404315b1553d6966d8 107 Hamap MF_01429 Iron-binding protein IscA [iscA]. 1 107 38.793 T 14-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 YP_0788 a216591ef4feb157e87826d0568af26d 115 PRINTS PR00340 P-II protein signature 21 36 1.6E-37 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YP_0788 a216591ef4feb157e87826d0568af26d 115 PRINTS PR00340 P-II protein signature 102 115 1.6E-37 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YP_0788 a216591ef4feb157e87826d0568af26d 115 PRINTS PR00340 P-II protein signature 42 60 1.6E-37 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YP_0788 a216591ef4feb157e87826d0568af26d 115 PRINTS PR00340 P-II protein signature 71 94 1.6E-37 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YP_0788 a216591ef4feb157e87826d0568af26d 115 ProSitePatterns PS00496 P-II protein uridylation site. 65 70 - T 14-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 YP_0788 a216591ef4feb157e87826d0568af26d 115 Pfam PF00543 Nitrogen regulatory protein P-II 23 114 2.4E-36 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YP_0788 a216591ef4feb157e87826d0568af26d 115 Gene3D G3DSA:3.30.70.120 9 115 3.7E-38 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YP_0788 a216591ef4feb157e87826d0568af26d 115 ProSitePatterns PS00638 P-II protein C-terminal region signature. 102 115 - T 14-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 YP_0788 a216591ef4feb157e87826d0568af26d 115 SUPERFAMILY SSF54913 20 114 1.72E-35 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta YP_0788 a216591ef4feb157e87826d0568af26d 115 SMART SM00938 23 115 1.7E-47 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YP_0361 37bd390fa0c05661e46697ea00616f91 823 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 66 125 1.6E-16 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_0361 37bd390fa0c05661e46697ea00616f91 823 SUPERFAMILY SSF50692 650 823 4.75E-38 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily YP_0361 37bd390fa0c05661e46697ea00616f91 823 Gene3D G3DSA:2.40.40.20 679 823 4.6E-41 T 14-10-2018 YP_0361 37bd390fa0c05661e46697ea00616f91 823 TIGRFAM TIGR02166 dmsA_ynfE: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 21 823 0.0 T 14-10-2018 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE GO:0009389|GO:0030151|GO:0051539|GO:0055114 YP_0361 37bd390fa0c05661e46697ea00616f91 823 Pfam PF01568 Molydopterin dinucleotide binding domain 704 815 1.0E-27 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 YP_0361 37bd390fa0c05661e46697ea00616f91 823 SMART SM00926 65 125 4.5E-8 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_0361 37bd390fa0c05661e46697ea00616f91 823 SUPERFAMILY SSF53706 66 706 6.15E-176 T 14-10-2018 YP_0361 37bd390fa0c05661e46697ea00616f91 823 Gene3D G3DSA:3.40.50.740 63 331 1.9E-87 T 14-10-2018 YP_0361 37bd390fa0c05661e46697ea00616f91 823 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 526 543 - T 14-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 YP_0361 37bd390fa0c05661e46697ea00616f91 823 Gene3D G3DSA:3.40.50.740 426 634 2.9E-49 T 14-10-2018 YP_0361 37bd390fa0c05661e46697ea00616f91 823 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 70 88 - T 14-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 YP_0361 37bd390fa0c05661e46697ea00616f91 823 Gene3D G3DSA:3.40.228.10 355 425 4.9E-18 T 14-10-2018 YP_0361 37bd390fa0c05661e46697ea00616f91 823 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 740 767 - T 14-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 YP_0361 37bd390fa0c05661e46697ea00616f91 823 Pfam PF00384 Molybdopterin oxidoreductase 128 583 3.5E-107 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_1680 0fb781fe57d46b8be78aabd3c85a45fb 256 SUPERFAMILY SSF100950 74 233 8.89E-26 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_1680 0fb781fe57d46b8be78aabd3c85a45fb 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.4E-6 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_1680 0fb781fe57d46b8be78aabd3c85a45fb 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.4E-6 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_1680 0fb781fe57d46b8be78aabd3c85a45fb 256 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 14-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 YP_1680 0fb781fe57d46b8be78aabd3c85a45fb 256 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 3.3E-17 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_1680 0fb781fe57d46b8be78aabd3c85a45fb 256 Gene3D G3DSA:1.10.10.10 2 57 7.2E-9 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1680 0fb781fe57d46b8be78aabd3c85a45fb 256 SMART SM00420 6 58 1.3E-23 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_1680 0fb781fe57d46b8be78aabd3c85a45fb 256 SMART SM01134 73 233 5.7E-64 T 14-10-2018 YP_1680 0fb781fe57d46b8be78aabd3c85a45fb 256 Pfam PF00455 DeoR C terminal sensor domain 77 232 5.0E-49 T 14-10-2018 IPR014036 DeoR C-terminal sensor domain YP_1680 0fb781fe57d46b8be78aabd3c85a45fb 256 SUPERFAMILY SSF46785 5 65 7.76E-13 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 SUPERFAMILY SSF50447 205 301 4.71E-31 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 Gene3D G3DSA:2.40.30.10 338 393 4.5E-29 T 14-10-2018 YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 393 2.7E-236 T 14-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 Gene3D G3DSA:3.40.50.300 1 203 1.3E-69 T 14-10-2018 YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 1.6E-14 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 9.1E-58 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 SUPERFAMILY SSF50465 298 393 9.21E-36 T 14-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 60.667 T 14-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 2.2E-17 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.0E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.0E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 2.0E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 2.0E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 2.0E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 Gene3D G3DSA:2.40.30.10 206 334 7.6E-53 T 14-10-2018 YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 SUPERFAMILY SSF52540 6 219 6.27E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0202 7674c1ea56bdb448966b5caedb8b0691 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 2.4E-33 T 14-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YP_1171 9330fcfe89fb3a120db61e2fa1e3ee55 192 SUPERFAMILY SSF159594 24 190 3.4E-27 T 14-10-2018 YP_1171 9330fcfe89fb3a120db61e2fa1e3ee55 192 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 32 185 2.1E-38 T 14-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component YP_3583 e07d5f1abbf842371dc5c8b69fd6761d 404 Pfam PF13356 Arm DNA-binding domain 3 88 1.3E-17 T 14-10-2018 IPR025166 Integrase, DNA-binding domain YP_3583 e07d5f1abbf842371dc5c8b69fd6761d 404 Gene3D G3DSA:1.10.443.10 207 385 7.5E-22 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YP_3583 e07d5f1abbf842371dc5c8b69fd6761d 404 Gene3D G3DSA:3.30.160.390 1 88 3.0E-32 T 14-10-2018 IPR038488 Integrase, DNA-binding domain superfamily YP_3583 e07d5f1abbf842371dc5c8b69fd6761d 404 Gene3D G3DSA:1.10.150.130 90 206 4.6E-32 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal YP_3583 e07d5f1abbf842371dc5c8b69fd6761d 404 Pfam PF00589 Phage integrase family 207 370 5.0E-24 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YP_3583 e07d5f1abbf842371dc5c8b69fd6761d 404 SUPERFAMILY SSF56349 98 380 2.24E-66 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YP_0370 6411df45064b368d5d83920ef251c8c2 507 SMART SM00382 33 222 6.0E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0370 6411df45064b368d5d83920ef251c8c2 507 SMART SM00382 287 483 8.3E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0370 6411df45064b368d5d83920ef251c8c2 507 Pfam PF00005 ABC transporter 279 434 2.8E-23 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0370 6411df45064b368d5d83920ef251c8c2 507 Pfam PF00005 ABC transporter 24 174 1.6E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0370 6411df45064b368d5d83920ef251c8c2 507 SUPERFAMILY SSF52540 250 489 3.74E-45 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0370 6411df45064b368d5d83920ef251c8c2 507 ProSitePatterns PS00211 ABC transporters family signature. 407 421 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0370 6411df45064b368d5d83920ef251c8c2 507 Gene3D G3DSA:3.40.50.300 254 503 1.1E-43 T 14-10-2018 YP_0370 6411df45064b368d5d83920ef251c8c2 507 Gene3D G3DSA:3.40.50.300 1 234 4.9E-57 T 14-10-2018 YP_0370 6411df45064b368d5d83920ef251c8c2 507 SUPERFAMILY SSF52540 8 231 1.67E-55 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0201 407d907f20d548e759cca53cd1b32bbb 702 SUPERFAMILY SSF54980 612 697 2.27E-29 T 14-10-2018 IPR035647 EF-G domain III/V-like YP_0201 407d907f20d548e759cca53cd1b32bbb 702 Hamap MF_00054_B Elongation factor G [fusA]. 6 700 113.937 T 14-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YP_0201 407d907f20d548e759cca53cd1b32bbb 702 Pfam PF03764 Elongation factor G, domain IV 486 607 1.3E-48 T 14-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 YP_0201 407d907f20d548e759cca53cd1b32bbb 702 Gene3D G3DSA:3.30.70.240 613 683 1.5E-89 T 14-10-2018 YP_0201 407d907f20d548e759cca53cd1b32bbb 702 SUPERFAMILY SSF52540 6 287 2.97E-106 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0201 407d907f20d548e759cca53cd1b32bbb 702 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 701 0.0 T 14-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YP_0201 407d907f20d548e759cca53cd1b32bbb 702 Gene3D G3DSA:3.40.50.300 1 303 3.8E-116 T 14-10-2018 YP_0201 407d907f20d548e759cca53cd1b32bbb 702 Gene3D G3DSA:2.40.30.10 304 411 1.8E-44 T 14-10-2018 YP_0201 407d907f20d548e759cca53cd1b32bbb 702 Gene3D G3DSA:3.30.70.870 412 487 1.3E-32 T 14-10-2018 YP_0201 407d907f20d548e759cca53cd1b32bbb 702 Pfam PF00009 Elongation factor Tu GTP binding domain 9 287 6.4E-67 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0201 407d907f20d548e759cca53cd1b32bbb 702 Gene3D G3DSA:3.30.230.10 491 695 1.5E-89 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_0201 407d907f20d548e759cca53cd1b32bbb 702 Pfam PF14492 Elongation Factor G, domain II 411 485 9.8E-34 T 14-10-2018 YP_0201 407d907f20d548e759cca53cd1b32bbb 702 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site YP_0201 407d907f20d548e759cca53cd1b32bbb 702 SMART SM00838 609 696 2.3E-58 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like YP_0201 407d907f20d548e759cca53cd1b32bbb 702 SUPERFAMILY SSF54980 409 487 1.73E-25 T 14-10-2018 IPR035647 EF-G domain III/V-like YP_0201 407d907f20d548e759cca53cd1b32bbb 702 SUPERFAMILY SSF54211 486 608 7.84E-43 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0201 407d907f20d548e759cca53cd1b32bbb 702 SUPERFAMILY SSF50447 271 411 1.63E-35 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YP_0201 407d907f20d548e759cca53cd1b32bbb 702 Pfam PF00679 Elongation factor G C-terminus 609 694 2.0E-31 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like YP_0201 407d907f20d548e759cca53cd1b32bbb 702 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 5.6E-32 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YP_0201 407d907f20d548e759cca53cd1b32bbb 702 Pfam PF03144 Elongation factor Tu domain 2 331 398 1.9E-17 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 YP_0201 407d907f20d548e759cca53cd1b32bbb 702 SMART SM00889 487 607 7.2E-76 T 14-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 YP_0201 407d907f20d548e759cca53cd1b32bbb 702 PRINTS PR00315 GTP-binding elongation factor signature 137 146 1.7E-16 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0201 407d907f20d548e759cca53cd1b32bbb 702 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.7E-16 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0201 407d907f20d548e759cca53cd1b32bbb 702 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.7E-16 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0201 407d907f20d548e759cca53cd1b32bbb 702 PRINTS PR00315 GTP-binding elongation factor signature 85 95 1.7E-16 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0201 407d907f20d548e759cca53cd1b32bbb 702 PRINTS PR00315 GTP-binding elongation factor signature 101 112 1.7E-16 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0705 72272fc65561a0418504a00f0636fb93 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 1.5E-14 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_0705 72272fc65561a0418504a00f0636fb93 303 Gene3D G3DSA:3.40.190.10 125 170 3.9E-6 T 14-10-2018 YP_0705 72272fc65561a0418504a00f0636fb93 303 Gene3D G3DSA:1.10.10.10 4 93 5.7E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0705 72272fc65561a0418504a00f0636fb93 303 Gene3D G3DSA:3.40.190.10 171 270 3.9E-6 T 14-10-2018 YP_0705 72272fc65561a0418504a00f0636fb93 303 SUPERFAMILY SSF46785 7 84 8.95E-16 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0705 72272fc65561a0418504a00f0636fb93 303 SUPERFAMILY SSF53850 101 255 1.71E-7 T 14-10-2018 YP_0855 2878b653f957cd700013190623ede902 288 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 281 2.8E-67 T 14-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YP_0855 2878b653f957cd700013190623ede902 288 SUPERFAMILY SSF51735 123 285 1.39E-51 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0855 2878b653f957cd700013190623ede902 288 SUPERFAMILY SSF53223 3 122 1.15E-39 T 14-10-2018 YP_0855 2878b653f957cd700013190623ede902 288 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 14-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YP_0855 2878b653f957cd700013190623ede902 288 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 37.244 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YP_0855 2878b653f957cd700013190623ede902 288 Gene3D G3DSA:3.40.50.10860 8 276 8.4E-106 T 14-10-2018 YP_0855 2878b653f957cd700013190623ede902 288 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 14-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YP_0855 2878b653f957cd700013190623ede902 288 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 8.2E-39 T 14-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YP_0855 2878b653f957cd700013190623ede902 288 Gene3D G3DSA:3.40.50.720 6 259 8.4E-106 T 14-10-2018 YP_0855 2878b653f957cd700013190623ede902 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 1.3E-87 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YP_0855 2878b653f957cd700013190623ede902 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 1.3E-87 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YP_0855 2878b653f957cd700013190623ede902 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 1.3E-87 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YP_0855 2878b653f957cd700013190623ede902 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 1.3E-87 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YP_0855 2878b653f957cd700013190623ede902 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 1.3E-87 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YP_0855 2878b653f957cd700013190623ede902 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 1.3E-87 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YP_0855 2878b653f957cd700013190623ede902 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 1.3E-87 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YP_3212 04f189ff4db11bc8589816d537535388 319 SUPERFAMILY SSF103481 65 168 2.09E-16 T 14-10-2018 YP_3212 04f189ff4db11bc8589816d537535388 319 SUPERFAMILY SSF103481 213 308 2.75E-7 T 14-10-2018 YP_3212 04f189ff4db11bc8589816d537535388 319 TIGRFAM TIGR00688 rarD: protein RarD 31 284 9.0E-99 T 14-10-2018 IPR004626 RarD protein GO:0005887 YP_3212 04f189ff4db11bc8589816d537535388 319 Pfam PF00892 EamA-like transporter family 32 165 3.0E-17 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_1218 c70a663cd42a8467f0f1c6a41ce19981 164 Gene3D G3DSA:1.10.10.10 1 63 2.7E-32 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1218 c70a663cd42a8467f0f1c6a41ce19981 164 SMART SM00344 12 121 6.2E-54 T 14-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 YP_1218 c70a663cd42a8467f0f1c6a41ce19981 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 6.2E-23 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YP_1218 c70a663cd42a8467f0f1c6a41ce19981 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 6.2E-23 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YP_1218 c70a663cd42a8467f0f1c6a41ce19981 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 6.2E-23 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YP_1218 c70a663cd42a8467f0f1c6a41ce19981 164 Pfam PF01037 Lrp/AsnC ligand binding domain 78 152 6.7E-25 T 14-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YP_1218 c70a663cd42a8467f0f1c6a41ce19981 164 SUPERFAMILY SSF46785 12 70 5.69E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1218 c70a663cd42a8467f0f1c6a41ce19981 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 12 58 4.7E-21 T 14-10-2018 YP_1218 c70a663cd42a8467f0f1c6a41ce19981 164 ProSitePatterns PS00519 AsnC-type HTH domain signature. 30 56 - T 14-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YP_1218 c70a663cd42a8467f0f1c6a41ce19981 164 SUPERFAMILY SSF54909 74 157 9.52E-22 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel YP_1218 c70a663cd42a8467f0f1c6a41ce19981 164 Gene3D G3DSA:3.30.70.920 64 159 1.7E-24 T 14-10-2018 YP_3284 831446878b1cf76dfd3f34ea1cc3d3d9 203 Gene3D G3DSA:3.30.70.240 135 203 2.8E-30 T 14-10-2018 YP_3284 831446878b1cf76dfd3f34ea1cc3d3d9 203 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 1 200 1.1E-74 T 14-10-2018 IPR015796 Impact family, bacterial/archaeal YP_3284 831446878b1cf76dfd3f34ea1cc3d3d9 203 SUPERFAMILY SSF54211 2 129 1.44E-42 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_3284 831446878b1cf76dfd3f34ea1cc3d3d9 203 Pfam PF01205 Uncharacterized protein family UPF0029 18 125 9.1E-29 T 14-10-2018 IPR001498 Impact, N-terminal YP_3284 831446878b1cf76dfd3f34ea1cc3d3d9 203 Pfam PF09186 Domain of unknown function (DUF1949) 141 195 8.4E-14 T 14-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal YP_3284 831446878b1cf76dfd3f34ea1cc3d3d9 203 Gene3D G3DSA:3.30.230.30 1 134 1.1E-52 T 14-10-2018 IPR036956 Impact, N-terminal domain superfamily YP_3284 831446878b1cf76dfd3f34ea1cc3d3d9 203 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 80 109 - T 14-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site YP_3284 831446878b1cf76dfd3f34ea1cc3d3d9 203 SUPERFAMILY SSF54980 136 201 1.44E-16 T 14-10-2018 IPR035647 EF-G domain III/V-like YP_1819 13f29385582a9f010a067b631c8915da 418 Pfam PF01734 Patatin-like phospholipase 86 271 3.2E-24 T 14-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 YP_1819 13f29385582a9f010a067b631c8915da 418 SUPERFAMILY SSF52151 86 271 2.09E-32 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YP_1819 13f29385582a9f010a067b631c8915da 418 Gene3D G3DSA:3.40.1090.10 70 195 1.2E-12 T 14-10-2018 YP_4035 1038505da4996e23e208c5b9bca1287e 149 Pfam PF03899 ATP synthase I chain 35 131 4.8E-18 T 14-10-2018 IPR005598 ATP synthase protein I YP_2814 669b499943a88c9e5f9a4841acfe47fe 156 PIRSF PIRSF006257 47 155 4.7E-44 T 14-10-2018 IPR007384 Protein of unknown function UCP006257 YP_2814 669b499943a88c9e5f9a4841acfe47fe 156 Gene3D G3DSA:1.20.1440.40 47 152 1.1E-33 T 14-10-2018 IPR036814 YqcC-like superfamily YP_2814 669b499943a88c9e5f9a4841acfe47fe 156 SUPERFAMILY SSF158452 47 154 3.14E-38 T 14-10-2018 IPR036814 YqcC-like superfamily YP_2814 669b499943a88c9e5f9a4841acfe47fe 156 Pfam PF04287 tRNA pseudouridine synthase C 53 150 2.7E-34 T 14-10-2018 IPR023376 YqcC-like domain YP_0881 baf89517e3aedde8ac3fc4ea0e37369a 598 Pfam PF00884 Sulfatase 260 512 1.2E-25 T 14-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 YP_0881 baf89517e3aedde8ac3fc4ea0e37369a 598 Pfam PF11893 Domain of unknown function (DUF3413) 6 252 1.5E-107 T 14-10-2018 IPR024588 Inner membrane protein YejM, N-terminal YP_0881 baf89517e3aedde8ac3fc4ea0e37369a 598 Gene3D G3DSA:3.40.720.10 249 522 1.2E-36 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YP_0881 baf89517e3aedde8ac3fc4ea0e37369a 598 PIRSF PIRSF004950 6 598 1.0E-243 T 14-10-2018 IPR012159 Inner membrane protein YejM YP_0881 baf89517e3aedde8ac3fc4ea0e37369a 598 SUPERFAMILY SSF53649 256 582 3.93E-50 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YP_2167 dd7e2563312bb4be94caca76a2bd338c 148 ProSitePatterns PS00934 Glyoxalase I signature 1. 18 39 - T 14-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 YP_2167 dd7e2563312bb4be94caca76a2bd338c 148 SUPERFAMILY SSF54593 12 141 3.22E-35 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YP_2167 dd7e2563312bb4be94caca76a2bd338c 148 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 9 147 8.2E-68 T 14-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 YP_2167 dd7e2563312bb4be94caca76a2bd338c 148 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 16 136 2.3E-26 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YP_2167 dd7e2563312bb4be94caca76a2bd338c 148 Gene3D G3DSA:3.10.180.10 14 144 6.1E-49 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YP_2962 51df37adbe29dac42b76cedd65403cda 216 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 7 193 18.771 T 14-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 YP_2962 51df37adbe29dac42b76cedd65403cda 216 Pfam PF02660 Glycerol-3-phosphate acyltransferase 11 184 1.7E-51 T 14-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 YP_2962 51df37adbe29dac42b76cedd65403cda 216 SMART SM01207 10 185 2.0E-85 T 14-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 YP_2962 51df37adbe29dac42b76cedd65403cda 216 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 1 195 7.1E-81 T 14-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 YP_3748 c8b77937b73c80a5511d90e80429e032 423 Pfam PF01734 Patatin-like phospholipase 28 196 1.9E-20 T 14-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 YP_3748 c8b77937b73c80a5511d90e80429e032 423 SUPERFAMILY SSF52151 23 275 2.2E-44 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YP_3748 c8b77937b73c80a5511d90e80429e032 423 Gene3D G3DSA:3.40.1090.10 112 256 1.7E-6 T 14-10-2018 YP_3748 c8b77937b73c80a5511d90e80429e032 423 Gene3D G3DSA:3.40.1090.10 13 108 3.6E-11 T 14-10-2018 YP_0038 1829953227a41b5bb1c8b893adf791dc 230 Hamap MF_02060 tRNA (guanosine(18)-2'-O)-methyltransferase [trmH]. 2 197 35.984 T 14-10-2018 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase GO:0008168|GO:0030488 YP_0038 1829953227a41b5bb1c8b893adf791dc 230 Pfam PF00588 SpoU rRNA Methylase family 20 159 7.0E-36 T 14-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 YP_0038 1829953227a41b5bb1c8b893adf791dc 230 Pfam PF12105 SpoU, rRNA methylase, C-terminal 163 218 8.5E-25 T 14-10-2018 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal GO:0009020 YP_0038 1829953227a41b5bb1c8b893adf791dc 230 Gene3D G3DSA:3.40.1280.10 1 190 9.0E-62 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YP_0038 1829953227a41b5bb1c8b893adf791dc 230 SUPERFAMILY SSF75217 4 174 2.16E-50 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases YP_0958 0852de7c33af002ce77506449fb2bef1 117 SMART SM00507 19 74 3.0E-4 T 14-10-2018 IPR003615 HNH nuclease YP_0958 0852de7c33af002ce77506449fb2bef1 117 Pfam PF01844 HNH endonuclease 31 79 9.2E-10 T 14-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 YP_2398 06f0710fd35419f35318b3bd8f532c4c 293 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 31 267 2.1E-75 T 14-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_2398 06f0710fd35419f35318b3bd8f532c4c 293 SUPERFAMILY SSF55120 31 286 1.14E-90 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_2398 06f0710fd35419f35318b3bd8f532c4c 293 Pfam PF01416 tRNA pseudouridine synthase 171 273 1.5E-28 T 14-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_2398 06f0710fd35419f35318b3bd8f532c4c 293 Pfam PF01416 tRNA pseudouridine synthase 37 131 2.9E-10 T 14-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_2398 06f0710fd35419f35318b3bd8f532c4c 293 Gene3D G3DSA:3.30.70.660 134 271 1.2E-49 T 14-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 YP_2398 06f0710fd35419f35318b3bd8f532c4c 293 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 30 272 34.516 T 14-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_2398 06f0710fd35419f35318b3bd8f532c4c 293 Gene3D G3DSA:3.30.70.580 28 133 7.2E-40 T 14-10-2018 YP_2398 06f0710fd35419f35318b3bd8f532c4c 293 PIRSF PIRSF001430 30 281 5.0E-77 T 14-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_0758 1aa1d2a8819dc6accb26e4f90dcafe2c 483 SMART SM00981 76 166 2.9E-22 T 14-10-2018 IPR004114 THUMP domain GO:0003723 YP_0758 1aa1d2a8819dc6accb26e4f90dcafe2c 483 SUPERFAMILY SSF143437 1 174 8.89E-47 T 14-10-2018 YP_0758 1aa1d2a8819dc6accb26e4f90dcafe2c 483 Gene3D G3DSA:3.40.50.620 176 396 2.1E-53 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0758 1aa1d2a8819dc6accb26e4f90dcafe2c 483 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 374 1.2E-128 T 14-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 YP_0758 1aa1d2a8819dc6accb26e4f90dcafe2c 483 SUPERFAMILY SSF52402 175 373 6.17E-42 T 14-10-2018 YP_0758 1aa1d2a8819dc6accb26e4f90dcafe2c 483 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 176 370 2.9E-79 T 14-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 YP_0758 1aa1d2a8819dc6accb26e4f90dcafe2c 483 Gene3D G3DSA:3.30.2130.30 1 175 1.4E-34 T 14-10-2018 YP_0758 1aa1d2a8819dc6accb26e4f90dcafe2c 483 Gene3D G3DSA:3.40.250.10 397 483 4.4E-10 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily YP_0758 1aa1d2a8819dc6accb26e4f90dcafe2c 483 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 483 230.324 T 14-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 YP_0758 1aa1d2a8819dc6accb26e4f90dcafe2c 483 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 384 483 3.9E-43 T 14-10-2018 IPR026340 Thiazole biosynthesis domain GO:0052837 KEGG: 00730+2.8.1.4 YP_0758 1aa1d2a8819dc6accb26e4f90dcafe2c 483 SUPERFAMILY SSF52821 392 482 3.01E-12 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily YP_0758 1aa1d2a8819dc6accb26e4f90dcafe2c 483 Pfam PF02926 THUMP domain 29 162 1.5E-23 T 14-10-2018 IPR004114 THUMP domain GO:0003723 YP_3936 c1825cacc04e4144dda2694927b1f383 58 Pfam PF12486 Type VI secretion system, EvfB, or VasL 1 51 2.4E-17 T 14-10-2018 IPR021069 ImpA, C-terminal YP_2468 0e06d64da01f800eae2b85a8f3155752 572 Gene3D G3DSA:3.20.20.140 134 569 6.8E-277 T 14-10-2018 YP_2468 0e06d64da01f800eae2b85a8f3155752 572 SUPERFAMILY SSF51556 135 571 5.11E-178 T 14-10-2018 IPR032466 Metal-dependent hydrolase YP_2468 0e06d64da01f800eae2b85a8f3155752 572 Pfam PF01979 Amidohydrolase family 130 459 8.0E-70 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 YP_2468 0e06d64da01f800eae2b85a8f3155752 572 ProSitePatterns PS00145 Urease active site. 322 338 - T 14-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2468 0e06d64da01f800eae2b85a8f3155752 572 ProSitePatterns PS01120 Urease nickel ligands signature. 132 145 - T 14-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2468 0e06d64da01f800eae2b85a8f3155752 572 SUPERFAMILY SSF51338 2 183 4.54E-56 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YP_2468 0e06d64da01f800eae2b85a8f3155752 572 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 3 571 2.5E-283 T 14-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2468 0e06d64da01f800eae2b85a8f3155752 572 Pfam PF00449 Urease alpha-subunit, N-terminal domain 3 124 9.4E-51 T 14-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2468 0e06d64da01f800eae2b85a8f3155752 572 Gene3D G3DSA:2.30.40.10 4 485 6.8E-277 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YP_2468 0e06d64da01f800eae2b85a8f3155752 572 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 432 445 5.2E-27 T 14-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2468 0e06d64da01f800eae2b85a8f3155752 572 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 300 317 5.2E-27 T 14-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2468 0e06d64da01f800eae2b85a8f3155752 572 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 406 421 5.2E-27 T 14-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2468 0e06d64da01f800eae2b85a8f3155752 572 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 339 355 5.2E-27 T 14-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2468 0e06d64da01f800eae2b85a8f3155752 572 Hamap MF_01953 Urease subunit alpha [ureC]. 2 572 53.489 T 14-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_3924 d07031d8dd32bb650760387c90160c64 193 Pfam PF03358 NADPH-dependent FMN reductase 1 139 4.7E-32 T 14-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 YP_3924 d07031d8dd32bb650760387c90160c64 193 Gene3D G3DSA:3.40.50.360 1 190 6.3E-46 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_3924 d07031d8dd32bb650760387c90160c64 193 SUPERFAMILY SSF52218 1 168 6.68E-32 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_3924 d07031d8dd32bb650760387c90160c64 193 TIGRFAM TIGR03567 FMN_reduc_SsuE: FMN reductase 2 169 3.5E-71 T 14-10-2018 IPR020048 NADPH-dependent FMN reductase, SsuE GO:0008752|GO:0046306|GO:0055114 KEGG: 00740+1.5.1.38|MetaCyc: PWY-7723 YP_1121 1c9040a36553e6aa5a1c911531fb76b0 160 Gene3D G3DSA:2.40.50.140 1 69 4.2E-18 T 14-10-2018 YP_1121 1c9040a36553e6aa5a1c911531fb76b0 160 Pfam PF00313 'Cold-shock' DNA-binding domain 2 62 6.7E-10 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1121 1c9040a36553e6aa5a1c911531fb76b0 160 SUPERFAMILY SSF50249 1 63 2.69E-11 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_3317 2f7323db960379460ea1965f80a39ed3 331 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 307 5.5E-33 T 14-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain YP_3317 2f7323db960379460ea1965f80a39ed3 331 Gene3D G3DSA:3.40.50.2300 67 308 5.1E-63 T 14-10-2018 YP_3317 2f7323db960379460ea1965f80a39ed3 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 52 1.1E-15 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_3317 2f7323db960379460ea1965f80a39ed3 331 Gene3D G3DSA:3.40.50.2300 161 292 5.1E-63 T 14-10-2018 YP_3317 2f7323db960379460ea1965f80a39ed3 331 SMART SM00354 5 75 3.6E-24 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_3317 2f7323db960379460ea1965f80a39ed3 331 Gene3D G3DSA:1.10.260.40 1 61 7.2E-15 T 14-10-2018 YP_3317 2f7323db960379460ea1965f80a39ed3 331 SUPERFAMILY SSF53822 63 317 2.36E-56 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_3317 2f7323db960379460ea1965f80a39ed3 331 SUPERFAMILY SSF47413 5 63 8.94E-13 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_3317 2f7323db960379460ea1965f80a39ed3 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 14-10-2018 YP_0512 48cc513ee034453d5ceb1da451c76c5b 118 PIRSF PIRSF000179 1 118 3.0E-50 T 14-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 YP_0512 48cc513ee034453d5ceb1da451c76c5b 118 Gene3D G3DSA:1.20.1300.10 1 118 3.4E-51 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_0512 48cc513ee034453d5ceb1da451c76c5b 118 ProDom PD015693 FUMARATE MEMBRANE REDUCTASE D SUBUNIT INNER TRANSMEMBRANE HYDROPHOBIC REDUCTASE POLYPEPTIDE 3 118 2.0E-48 T 14-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 YP_0512 48cc513ee034453d5ceb1da451c76c5b 118 SUPERFAMILY SSF81343 1 118 1.16E-51 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_0512 48cc513ee034453d5ceb1da451c76c5b 118 Pfam PF02313 Fumarate reductase subunit D 5 116 2.2E-50 T 14-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 YP_0512 48cc513ee034453d5ceb1da451c76c5b 118 Hamap MF_00709 Fumarate reductase subunit D [frdD]. 1 118 26.641 T 14-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 YP_0374 6d5f87381be59b13c4268c3b1c5f55e8 495 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 262 446 3.8E-48 T 14-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YP_0374 6d5f87381be59b13c4268c3b1c5f55e8 495 PIRSF PIRSF000538 3 493 2.1E-128 T 14-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YP_0374 6d5f87381be59b13c4268c3b1c5f55e8 495 Gene3D G3DSA:3.30.420.40 2 253 3.5E-79 T 14-10-2018 YP_0374 6d5f87381be59b13c4268c3b1c5f55e8 495 Gene3D G3DSA:3.30.420.40 257 493 2.5E-69 T 14-10-2018 YP_0374 6d5f87381be59b13c4268c3b1c5f55e8 495 SUPERFAMILY SSF53067 6 254 3.33E-74 T 14-10-2018 YP_0374 6d5f87381be59b13c4268c3b1c5f55e8 495 SUPERFAMILY SSF53067 257 490 1.41E-61 T 14-10-2018 YP_0374 6d5f87381be59b13c4268c3b1c5f55e8 495 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 252 1.3E-60 T 14-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YP_0079 aafc867753a2fa9226e5179bd8918b26 300 SUPERFAMILY SSF160240 209 288 2.09E-24 T 14-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 YP_0079 aafc867753a2fa9226e5179bd8918b26 300 SUPERFAMILY SSF161111 9 207 7.72E-51 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily YP_0079 aafc867753a2fa9226e5179bd8918b26 300 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 11 288 9.2E-73 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 YP_0079 aafc867753a2fa9226e5179bd8918b26 300 Pfam PF01545 Cation efflux family 16 206 5.6E-43 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 YP_0079 aafc867753a2fa9226e5179bd8918b26 300 Hamap MF_01425 Ferrous-iron efflux pump FieF [fieF]. 1 300 60.694 T 14-10-2018 IPR023783 Cation efflux pump FieF GO:0006829|GO:0015684|GO:0016021|GO:0046873 YP_0079 aafc867753a2fa9226e5179bd8918b26 300 Pfam PF16916 Dimerisation domain of Zinc Transporter 210 287 4.4E-25 T 14-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain YP_0079 aafc867753a2fa9226e5179bd8918b26 300 Gene3D G3DSA:3.30.70.1350 207 290 4.2E-33 T 14-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 YP_0079 aafc867753a2fa9226e5179bd8918b26 300 Gene3D G3DSA:1.20.1510.10 8 206 3.9E-66 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily YP_0628 d047f4912370d7b92283cb3d3bbdcfd1 241 TIGRFAM TIGR02325 C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF 7 241 2.2E-86 T 14-10-2018 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF YP_0628 d047f4912370d7b92283cb3d3bbdcfd1 241 SUPERFAMILY SSF46785 8 83 2.02E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0628 d047f4912370d7b92283cb3d3bbdcfd1 241 Gene3D G3DSA:3.40.1410.10 84 241 2.4E-37 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YP_0628 d047f4912370d7b92283cb3d3bbdcfd1 241 Gene3D G3DSA:1.10.10.10 10 75 1.5E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0628 d047f4912370d7b92283cb3d3bbdcfd1 241 Pfam PF07702 UTRA domain 96 235 6.3E-30 T 14-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 YP_0628 d047f4912370d7b92283cb3d3bbdcfd1 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 75 2.1E-19 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_0628 d047f4912370d7b92283cb3d3bbdcfd1 241 SMART SM00345 17 75 4.1E-20 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_0628 d047f4912370d7b92283cb3d3bbdcfd1 241 SMART SM00866 96 236 1.7E-28 T 14-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 YP_0628 d047f4912370d7b92283cb3d3bbdcfd1 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 3.3E-8 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_0628 d047f4912370d7b92283cb3d3bbdcfd1 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 3.3E-8 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_0628 d047f4912370d7b92283cb3d3bbdcfd1 241 SUPERFAMILY SSF64288 63 240 3.45E-37 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YP_3012 73e810269fa608afe3a6d9cf82bcea7d 239 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 99 116 - T 14-10-2018 IPR018046 Pili assembly chaperone, conserved site YP_3012 73e810269fa608afe3a6d9cf82bcea7d 239 Gene3D G3DSA:2.60.40.10 23 142 3.6E-44 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3012 73e810269fa608afe3a6d9cf82bcea7d 239 PRINTS PR00969 Pili chaperone signature 70 91 1.4E-34 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3012 73e810269fa608afe3a6d9cf82bcea7d 239 PRINTS PR00969 Pili chaperone signature 123 138 1.4E-34 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3012 73e810269fa608afe3a6d9cf82bcea7d 239 PRINTS PR00969 Pili chaperone signature 24 33 1.4E-34 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3012 73e810269fa608afe3a6d9cf82bcea7d 239 PRINTS PR00969 Pili chaperone signature 159 174 1.4E-34 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3012 73e810269fa608afe3a6d9cf82bcea7d 239 PRINTS PR00969 Pili chaperone signature 100 117 1.4E-34 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3012 73e810269fa608afe3a6d9cf82bcea7d 239 SUPERFAMILY SSF49584 148 234 3.92E-23 T 14-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_3012 73e810269fa608afe3a6d9cf82bcea7d 239 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 165 222 4.7E-14 T 14-10-2018 IPR016148 Pili assembly chaperone, C-terminal YP_3012 73e810269fa608afe3a6d9cf82bcea7d 239 SUPERFAMILY SSF49354 24 141 3.92E-40 T 14-10-2018 IPR008962 PapD-like superfamily YP_3012 73e810269fa608afe3a6d9cf82bcea7d 239 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 24 141 4.5E-40 T 14-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YP_3012 73e810269fa608afe3a6d9cf82bcea7d 239 Gene3D G3DSA:2.60.40.10 144 234 2.1E-24 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_0042 2ac2bab274a8c6ea6035a922ebf2f58f 567 SMART SM00532 36 435 3.4E-42 T 14-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 YP_0042 2ac2bab274a8c6ea6035a922ebf2f58f 567 SUPERFAMILY SSF50249 317 397 4.28E-17 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_0042 2ac2bab274a8c6ea6035a922ebf2f58f 567 SUPERFAMILY SSF56091 32 314 7.34E-68 T 14-10-2018 YP_0042 2ac2bab274a8c6ea6035a922ebf2f58f 567 Gene3D G3DSA:3.30.470.90 97 315 4.7E-29 T 14-10-2018 YP_0042 2ac2bab274a8c6ea6035a922ebf2f58f 567 SUPERFAMILY SSF47781 397 562 5.34E-32 T 14-10-2018 IPR010994 RuvA domain 2-like YP_0042 2ac2bab274a8c6ea6035a922ebf2f58f 567 Hamap MF_01587 DNA ligase B [ligB]. 5 563 54.067 T 14-10-2018 IPR020923 DNA ligase B GO:0003911|GO:0006259 YP_0042 2ac2bab274a8c6ea6035a922ebf2f58f 567 Gene3D G3DSA:2.40.50.140 316 388 1.5E-9 T 14-10-2018 YP_0042 2ac2bab274a8c6ea6035a922ebf2f58f 567 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 320 394 2.3E-14 T 14-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 YP_0042 2ac2bab274a8c6ea6035a922ebf2f58f 567 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 125 315 6.9E-18 T 14-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 YP_0042 2ac2bab274a8c6ea6035a922ebf2f58f 567 Gene3D G3DSA:1.10.287.610 36 80 5.1E-5 T 14-10-2018 YP_1651 e30b24058fef793ba8075f9fad711716 267 Pfam PF00975 Thioesterase domain 20 249 6.3E-67 T 14-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 YP_1651 e30b24058fef793ba8075f9fad711716 267 Gene3D G3DSA:3.40.50.1820 7 243 5.5E-52 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1651 e30b24058fef793ba8075f9fad711716 267 SUPERFAMILY SSF53474 9 246 1.41E-46 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_3619 7ef68f24bf10ee3b5d60bc250413e543 128 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YP_3619 7ef68f24bf10ee3b5d60bc250413e543 128 Pfam PF00293 NUDIX domain 6 124 5.7E-21 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YP_3619 7ef68f24bf10ee3b5d60bc250413e543 128 Gene3D G3DSA:3.90.79.10 1 128 1.4E-38 T 14-10-2018 YP_3619 7ef68f24bf10ee3b5d60bc250413e543 128 SUPERFAMILY SSF55811 1 126 5.69E-39 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YP_3619 7ef68f24bf10ee3b5d60bc250413e543 128 PRINTS PR00502 NUDIX hydrolase family signature 47 62 2.6E-9 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YP_3619 7ef68f24bf10ee3b5d60bc250413e543 128 PRINTS PR00502 NUDIX hydrolase family signature 33 47 2.6E-9 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YP_3619 7ef68f24bf10ee3b5d60bc250413e543 128 PRINTS PR01401 Mutator MutT protein signature 77 90 1.5E-10 T 14-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 YP_3619 7ef68f24bf10ee3b5d60bc250413e543 128 PRINTS PR01401 Mutator MutT protein signature 2 23 1.5E-10 T 14-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 YP_3619 7ef68f24bf10ee3b5d60bc250413e543 128 TIGRFAM TIGR00586 mutt: mutator mutT protein 1 127 1.1E-50 T 14-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 YP_3897 e7fc72c6a5b4bb3b22cdf9661a8937f5 454 SUPERFAMILY SSF103473 23 435 1.96E-50 T 14-10-2018 IPR036259 MFS transporter superfamily YP_3897 e7fc72c6a5b4bb3b22cdf9661a8937f5 454 Pfam PF07690 Major Facilitator Superfamily 31 398 5.3E-26 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_3897 e7fc72c6a5b4bb3b22cdf9661a8937f5 454 ProSitePatterns PS00217 Sugar transport proteins signature 2. 137 162 - T 14-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 YP_3897 e7fc72c6a5b4bb3b22cdf9661a8937f5 454 Gene3D G3DSA:1.20.1250.20 27 453 4.2E-47 T 14-10-2018 YP_1918 8db134ac5c8bdb1beb8e4960ef9e4639 386 TIGRFAM TIGR01388 rnd: ribonuclease D 18 383 4.3E-146 T 14-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 YP_1918 8db134ac5c8bdb1beb8e4960ef9e4639 386 Gene3D G3DSA:1.10.150.80 307 386 1.4E-28 T 14-10-2018 YP_1918 8db134ac5c8bdb1beb8e4960ef9e4639 386 SUPERFAMILY SSF47819 309 384 2.48E-22 T 14-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 YP_1918 8db134ac5c8bdb1beb8e4960ef9e4639 386 SMART SM00474 16 184 1.3E-40 T 14-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 YP_1918 8db134ac5c8bdb1beb8e4960ef9e4639 386 Hamap MF_01899 Ribonuclease D [rnd]. 16 384 45.681 T 14-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 YP_1918 8db134ac5c8bdb1beb8e4960ef9e4639 386 Gene3D G3DSA:1.10.150.80 208 306 1.8E-23 T 14-10-2018 YP_1918 8db134ac5c8bdb1beb8e4960ef9e4639 386 Pfam PF01612 3'-5' exonuclease 16 181 8.6E-35 T 14-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 YP_1918 8db134ac5c8bdb1beb8e4960ef9e4639 386 Gene3D G3DSA:3.30.420.10 14 207 4.5E-63 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_1918 8db134ac5c8bdb1beb8e4960ef9e4639 386 Pfam PF00570 HRDC domain 226 292 1.5E-16 T 14-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 YP_1918 8db134ac5c8bdb1beb8e4960ef9e4639 386 SUPERFAMILY SSF53098 11 223 1.3E-62 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1918 8db134ac5c8bdb1beb8e4960ef9e4639 386 SUPERFAMILY SSF47819 207 313 4.36E-30 T 14-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 YP_1918 8db134ac5c8bdb1beb8e4960ef9e4639 386 SMART SM00341 223 302 3.7E-18 T 14-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 YP_0677 68324c0d7f6e6f833a8445dfb0cbfa7a 222 Gene3D G3DSA:1.10.3720.10 3 217 2.2E-47 T 14-10-2018 IPR035906 MetI-like superfamily YP_0677 68324c0d7f6e6f833a8445dfb0cbfa7a 222 SUPERFAMILY SSF161098 15 202 4.97E-40 T 14-10-2018 IPR035906 MetI-like superfamily YP_0677 68324c0d7f6e6f833a8445dfb0cbfa7a 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 111 2.7E-26 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YP_0677 68324c0d7f6e6f833a8445dfb0cbfa7a 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 209 2.5E-18 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_3068 aa2c8bddcd6a51443cf525b3d7a09cb9 166 PIRSF PIRSF028301 1 166 9.5E-61 T 14-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YP_3068 aa2c8bddcd6a51443cf525b3d7a09cb9 166 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 9 160 2.2E-54 T 14-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YP_3068 aa2c8bddcd6a51443cf525b3d7a09cb9 166 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 6 161 1.1E-54 T 14-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YP_2417 f9d825484923a3ef5af7e87d6eba5606 775 Gene3D G3DSA:3.40.50.720 344 529 2.9E-60 T 14-10-2018 YP_2417 f9d825484923a3ef5af7e87d6eba5606 775 TIGRFAM TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ 41 761 0.0 T 14-10-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YP_2417 f9d825484923a3ef5af7e87d6eba5606 775 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 524 549 - T 14-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YP_2417 f9d825484923a3ef5af7e87d6eba5606 775 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 671 757 3.2E-5 T 14-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YP_2417 f9d825484923a3ef5af7e87d6eba5606 775 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 527 620 6.0E-25 T 14-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YP_2417 f9d825484923a3ef5af7e87d6eba5606 775 Pfam PF00378 Enoyl-CoA hydratase/isomerase 53 238 1.8E-40 T 14-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 YP_2417 f9d825484923a3ef5af7e87d6eba5606 775 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 346 524 1.5E-56 T 14-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YP_2417 f9d825484923a3ef5af7e87d6eba5606 775 SUPERFAMILY SSF52096 39 334 3.77E-64 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YP_2417 f9d825484923a3ef5af7e87d6eba5606 775 SUPERFAMILY SSF48179 670 761 2.64E-25 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_2417 f9d825484923a3ef5af7e87d6eba5606 775 SUPERFAMILY SSF51735 343 524 1.92E-49 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2417 f9d825484923a3ef5af7e87d6eba5606 775 Gene3D G3DSA:3.90.226.10 38 340 8.6E-95 T 14-10-2018 YP_2417 f9d825484923a3ef5af7e87d6eba5606 775 Gene3D G3DSA:1.10.1040.50 530 756 1.2E-64 T 14-10-2018 YP_2417 f9d825484923a3ef5af7e87d6eba5606 775 SUPERFAMILY SSF48179 527 626 1.79E-29 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_2417 f9d825484923a3ef5af7e87d6eba5606 775 Hamap MF_01617 Fatty acid oxidation complex subunit alpha [fadJ]. 36 761 54.558 T 14-10-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YP_3740 adea6d87aeebc1f454c03413023c996b 326 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 113 283 7.1E-24 T 14-10-2018 YP_3740 adea6d87aeebc1f454c03413023c996b 326 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 98 316 2.3E-87 T 14-10-2018 YP_3740 adea6d87aeebc1f454c03413023c996b 326 Gene3D G3DSA:1.10.150.210 121 183 1.4E-116 T 14-10-2018 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 YP_3740 adea6d87aeebc1f454c03413023c996b 326 SUPERFAMILY SSF56784 112 316 1.11E-48 T 14-10-2018 IPR036412 HAD-like superfamily YP_3740 adea6d87aeebc1f454c03413023c996b 326 Gene3D G3DSA:3.40.50.1000 107 316 1.4E-116 T 14-10-2018 IPR023214 HAD superfamily YP_3740 adea6d87aeebc1f454c03413023c996b 326 Pfam PF12710 haloacid dehalogenase-like hydrolase 146 282 8.6E-17 T 14-10-2018 YP_3740 adea6d87aeebc1f454c03413023c996b 326 Gene3D G3DSA:3.30.70.2020 38 320 1.4E-116 T 14-10-2018 YP_0598 628759738f8ff7de2f1077aa34b9f281 103 SUPERFAMILY SSF47413 30 92 7.78E-15 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_0598 628759738f8ff7de2f1077aa34b9f281 103 SMART SM00530 39 94 7.7E-11 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_0598 628759738f8ff7de2f1077aa34b9f281 103 Pfam PF01381 Helix-turn-helix 42 91 2.9E-13 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_0598 628759738f8ff7de2f1077aa34b9f281 103 Gene3D G3DSA:1.10.260.40 11 97 4.6E-15 T 14-10-2018 YP_3525 fa7f2920242bb163ab85d39ddf12e5ab 152 Gene3D G3DSA:3.30.70.1290 3 136 2.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3525 fa7f2920242bb163ab85d39ddf12e5ab 152 Pfam PF01797 Transposase IS200 like 12 129 1.0E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_3525 fa7f2920242bb163ab85d39ddf12e5ab 152 SUPERFAMILY SSF143422 1 129 2.35E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3525 fa7f2920242bb163ab85d39ddf12e5ab 152 SMART SM01321 11 129 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0987 fa7f2920242bb163ab85d39ddf12e5ab 152 Gene3D G3DSA:3.30.70.1290 3 136 2.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0987 fa7f2920242bb163ab85d39ddf12e5ab 152 Pfam PF01797 Transposase IS200 like 12 129 1.0E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0987 fa7f2920242bb163ab85d39ddf12e5ab 152 SUPERFAMILY SSF143422 1 129 2.35E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0987 fa7f2920242bb163ab85d39ddf12e5ab 152 SMART SM01321 11 129 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2540 fa7f2920242bb163ab85d39ddf12e5ab 152 Gene3D G3DSA:3.30.70.1290 3 136 2.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2540 fa7f2920242bb163ab85d39ddf12e5ab 152 Pfam PF01797 Transposase IS200 like 12 129 1.0E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2540 fa7f2920242bb163ab85d39ddf12e5ab 152 SUPERFAMILY SSF143422 1 129 2.35E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_2540 fa7f2920242bb163ab85d39ddf12e5ab 152 SMART SM01321 11 129 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_1599 fa7f2920242bb163ab85d39ddf12e5ab 152 Gene3D G3DSA:3.30.70.1290 3 136 2.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_1599 fa7f2920242bb163ab85d39ddf12e5ab 152 Pfam PF01797 Transposase IS200 like 12 129 1.0E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_1599 fa7f2920242bb163ab85d39ddf12e5ab 152 SUPERFAMILY SSF143422 1 129 2.35E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_1599 fa7f2920242bb163ab85d39ddf12e5ab 152 SMART SM01321 11 129 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0651 fa7f2920242bb163ab85d39ddf12e5ab 152 Gene3D G3DSA:3.30.70.1290 3 136 2.2E-40 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0651 fa7f2920242bb163ab85d39ddf12e5ab 152 Pfam PF01797 Transposase IS200 like 12 129 1.0E-35 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0651 fa7f2920242bb163ab85d39ddf12e5ab 152 SUPERFAMILY SSF143422 1 129 2.35E-46 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0651 fa7f2920242bb163ab85d39ddf12e5ab 152 SMART SM01321 11 129 3.6E-37 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_2848 e0ed1d3206108b5c6b8936f2ec865373 396 Gene3D G3DSA:3.30.420.370 149 214 1.1E-60 T 14-10-2018 YP_2848 e0ed1d3206108b5c6b8936f2ec865373 396 Pfam PF12693 GspL periplasmic domain 245 395 3.5E-36 T 14-10-2018 IPR025691 GspL periplasmic domain YP_2848 e0ed1d3206108b5c6b8936f2ec865373 396 SUPERFAMILY SSF53067 154 237 7.77E-14 T 14-10-2018 YP_2848 e0ed1d3206108b5c6b8936f2ec865373 396 Pfam PF05134 Type II secretion system (T2SS), protein L 14 238 1.5E-73 T 14-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain YP_2848 e0ed1d3206108b5c6b8936f2ec865373 396 TIGRFAM TIGR01709 typeII_sec_gspL: type II secretion system protein L 14 396 3.2E-107 T 14-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 YP_2848 e0ed1d3206108b5c6b8936f2ec865373 396 Gene3D G3DSA:3.30.420.380 13 236 1.1E-60 T 14-10-2018 YP_2848 e0ed1d3206108b5c6b8936f2ec865373 396 SUPERFAMILY SSF53067 13 151 5.96E-26 T 14-10-2018 YP_0690 e3b4292ae3a6c1a4414fc51b4448b066 259 Gene3D G3DSA:3.60.20.10 3 258 1.7E-97 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YP_0690 e3b4292ae3a6c1a4414fc51b4448b066 259 Pfam PF13230 Glutamine amidotransferases class-II 3 255 1.3E-113 T 14-10-2018 IPR026869 Putative glutamine amidotransferase type 2 YP_0690 e3b4292ae3a6c1a4414fc51b4448b066 259 SUPERFAMILY SSF56235 4 254 3.86E-51 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YP_3507 5b1c9bbaa676c6e651fac7b190323325 319 TIGRFAM TIGR01380 glut_syn: glutathione synthase 2 312 4.5E-138 T 14-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 YP_3507 5b1c9bbaa676c6e651fac7b190323325 319 Gene3D G3DSA:3.30.470.20 115 295 1.3E-120 T 14-10-2018 YP_3507 5b1c9bbaa676c6e651fac7b190323325 319 Hamap MF_00162 Glutathione synthetase [gshB]. 1 317 183.522 T 14-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 YP_3507 5b1c9bbaa676c6e651fac7b190323325 319 SUPERFAMILY SSF56059 123 313 6.36E-58 T 14-10-2018 YP_3507 5b1c9bbaa676c6e651fac7b190323325 319 Gene3D G3DSA:3.30.1490.20 137 201 1.3E-120 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YP_3507 5b1c9bbaa676c6e651fac7b190323325 319 Gene3D G3DSA:3.40.50.20 7 114 1.3E-120 T 14-10-2018 YP_3507 5b1c9bbaa676c6e651fac7b190323325 319 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 2 120 6.8E-48 T 14-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 YP_3507 5b1c9bbaa676c6e651fac7b190323325 319 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 124 296 2.6E-80 T 14-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 YP_3507 5b1c9bbaa676c6e651fac7b190323325 319 SUPERFAMILY SSF52440 2 122 1.73E-47 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YP_2176 261b73c1f8cbaaa7d4bf27568258533c 383 Gene3D G3DSA:3.40.50.150 117 376 6.2E-99 T 14-10-2018 YP_2176 261b73c1f8cbaaa7d4bf27568258533c 383 PIRSF PIRSF003085 6 379 8.6E-124 T 14-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 YP_2176 261b73c1f8cbaaa7d4bf27568258533c 383 Pfam PF02353 Mycolic acid cyclopropane synthetase 108 368 8.6E-101 T 14-10-2018 YP_2176 261b73c1f8cbaaa7d4bf27568258533c 383 SUPERFAMILY SSF53335 117 370 1.62E-76 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0824 2bbe597db8094ad19cce35e541308e2b 349 Gene3D G3DSA:3.40.50.2000 177 347 6.2E-33 T 14-10-2018 YP_0824 2bbe597db8094ad19cce35e541308e2b 349 Pfam PF13439 Glycosyltransferase Family 4 66 168 3.3E-17 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 YP_0824 2bbe597db8094ad19cce35e541308e2b 349 Gene3D G3DSA:3.40.50.2000 12 176 7.7E-17 T 14-10-2018 YP_0824 2bbe597db8094ad19cce35e541308e2b 349 SUPERFAMILY SSF53756 13 347 2.56E-63 T 14-10-2018 YP_0824 2bbe597db8094ad19cce35e541308e2b 349 Pfam PF00534 Glycosyl transferases group 1 177 317 7.1E-23 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 YP_2207 0b11631209aaa1977cd85fd0c33cd387 667 PIRSF PIRSF036506 1 660 0.0 T 14-10-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00520+2.1.2.13+1.1.1.305 YP_2207 0b11631209aaa1977cd85fd0c33cd387 667 Hamap MF_01166 Bifunctional polymyxin resistance protein ArnA [arnA]. 1 660 64.645 T 14-10-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00520+2.1.2.13+1.1.1.305 YP_2207 0b11631209aaa1977cd85fd0c33cd387 667 SUPERFAMILY SSF50486 205 304 3.14E-23 T 14-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 YP_2207 0b11631209aaa1977cd85fd0c33cd387 667 SUPERFAMILY SSF53328 1 202 1.28E-55 T 14-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YP_2207 0b11631209aaa1977cd85fd0c33cd387 667 Pfam PF01370 NAD dependent epimerase/dehydratase family 318 566 3.9E-42 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YP_2207 0b11631209aaa1977cd85fd0c33cd387 667 Pfam PF00551 Formyl transferase 25 173 4.1E-24 T 14-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YP_2207 0b11631209aaa1977cd85fd0c33cd387 667 SUPERFAMILY SSF51735 317 651 4.32E-67 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2207 0b11631209aaa1977cd85fd0c33cd387 667 Gene3D G3DSA:3.40.50.12230 1 304 2.4E-104 T 14-10-2018 YP_2207 0b11631209aaa1977cd85fd0c33cd387 667 Pfam PF02911 Formyl transferase, C-terminal domain 203 283 1.4E-16 T 14-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YP_2207 0b11631209aaa1977cd85fd0c33cd387 667 Gene3D G3DSA:3.40.50.720 314 659 5.7E-122 T 14-10-2018 YP_2731 d1208f2456da1237a858d89259f0d144 131 Pfam PF06836 Protein of unknown function (DUF1240) 37 131 3.7E-41 T 14-10-2018 IPR010665 Protein of unknown function DUF1240 YP_2247 5d84072c28e831e740c7f984a2cdbe1b 269 Pfam PF01026 TatD related DNase 4 255 2.0E-76 T 14-10-2018 IPR001130 TatD family GO:0016788 YP_2247 5d84072c28e831e740c7f984a2cdbe1b 269 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 126 136 - T 14-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 YP_2247 5d84072c28e831e740c7f984a2cdbe1b 269 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 14-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 YP_2247 5d84072c28e831e740c7f984a2cdbe1b 269 PIRSF PIRSF005902 1 259 1.1E-72 T 14-10-2018 IPR001130 TatD family GO:0016788 YP_2247 5d84072c28e831e740c7f984a2cdbe1b 269 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 14-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 YP_2247 5d84072c28e831e740c7f984a2cdbe1b 269 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 3 256 4.3E-92 T 14-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 YP_2247 5d84072c28e831e740c7f984a2cdbe1b 269 SUPERFAMILY SSF51556 1 259 6.43E-86 T 14-10-2018 IPR032466 Metal-dependent hydrolase YP_2247 5d84072c28e831e740c7f984a2cdbe1b 269 Gene3D G3DSA:3.20.20.140 1 264 4.9E-99 T 14-10-2018 YP_1426 0527fb9e6f879148b9cf5afc20661540 753 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 736 753 - T 14-10-2018 IPR010917 TonB-dependent receptor, conserved site YP_1426 0527fb9e6f879148b9cf5afc20661540 753 Gene3D G3DSA:2.170.130.10 72 204 3.8E-37 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YP_1426 0527fb9e6f879148b9cf5afc20661540 753 Pfam PF07715 TonB-dependent Receptor Plug Domain 95 197 6.6E-15 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain YP_1426 0527fb9e6f879148b9cf5afc20661540 753 Pfam PF00593 TonB dependent receptor 283 752 7.4E-43 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YP_1426 0527fb9e6f879148b9cf5afc20661540 753 Gene3D G3DSA:2.40.170.20 205 753 1.2E-152 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_1426 0527fb9e6f879148b9cf5afc20661540 753 SUPERFAMILY SSF56935 87 753 1.41E-111 T 14-10-2018 YP_1426 0527fb9e6f879148b9cf5afc20661540 753 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 97 753 1.6E-101 T 14-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 YP_2559 fb7a0275ed6f6692408bf6c1c1a2b07c 128 Gene3D G3DSA:3.90.1010.10 1 128 6.6E-58 T 14-10-2018 YP_2559 fb7a0275ed6f6692408bf6c1c1a2b07c 128 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 1.0E-68 T 14-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 YP_2559 fb7a0275ed6f6692408bf6c1c1a2b07c 128 SUPERFAMILY SSF82649 1 125 4.45E-47 T 14-10-2018 YP_2559 fb7a0275ed6f6692408bf6c1c1a2b07c 128 Pfam PF01592 NifU-like N terminal domain 2 126 1.5E-56 T 14-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 YP_3709 f1947a172849d381143cc24849813d53 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.9E-15 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3709 f1947a172849d381143cc24849813d53 299 Pfam PF03466 LysR substrate binding domain 98 288 7.0E-12 T 14-10-2018 IPR005119 LysR, substrate-binding YP_3709 f1947a172849d381143cc24849813d53 299 SUPERFAMILY SSF46785 1 87 2.72E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3709 f1947a172849d381143cc24849813d53 299 Gene3D G3DSA:3.40.190.10 99 284 1.3E-9 T 14-10-2018 YP_3709 f1947a172849d381143cc24849813d53 299 Gene3D G3DSA:3.40.190.10 171 268 1.3E-9 T 14-10-2018 YP_3709 f1947a172849d381143cc24849813d53 299 Gene3D G3DSA:1.10.10.10 5 95 1.2E-17 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3709 f1947a172849d381143cc24849813d53 299 SUPERFAMILY SSF53850 92 290 2.95E-26 T 14-10-2018 YP_3359 24b1c5eecd66e00b89ef721819c8b843 671 Pfam PF00990 Diguanylate cyclase, GGDEF domain 247 399 1.4E-24 T 14-10-2018 IPR000160 GGDEF domain YP_3359 24b1c5eecd66e00b89ef721819c8b843 671 SUPERFAMILY SSF55073 249 405 2.75E-26 T 14-10-2018 IPR029787 Nucleotide cyclase YP_3359 24b1c5eecd66e00b89ef721819c8b843 671 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 244 403 4.8E-15 T 14-10-2018 IPR000160 GGDEF domain YP_3359 24b1c5eecd66e00b89ef721819c8b843 671 Gene3D G3DSA:3.20.20.450 417 667 1.0E-83 T 14-10-2018 IPR035919 EAL domain superfamily YP_3359 24b1c5eecd66e00b89ef721819c8b843 671 SMART SM00052 413 658 3.8E-96 T 14-10-2018 IPR001633 EAL domain YP_3359 24b1c5eecd66e00b89ef721819c8b843 671 Gene3D G3DSA:3.30.70.270 239 416 1.4E-30 T 14-10-2018 YP_3359 24b1c5eecd66e00b89ef721819c8b843 671 SUPERFAMILY SSF141868 418 665 1.31E-77 T 14-10-2018 IPR035919 EAL domain superfamily YP_3359 24b1c5eecd66e00b89ef721819c8b843 671 SMART SM00267 229 403 1.9E-26 T 14-10-2018 IPR000160 GGDEF domain YP_3359 24b1c5eecd66e00b89ef721819c8b843 671 Pfam PF17154 Gammaproteobacterial periplasmic sensor domain 36 155 2.9E-58 T 14-10-2018 IPR033419 Gammaproteobacterial periplasmic sensor domain GAPES3 YP_3359 24b1c5eecd66e00b89ef721819c8b843 671 Pfam PF00563 EAL domain 419 653 4.5E-63 T 14-10-2018 IPR001633 EAL domain YP_0946 f505e0ea49fcb248fdc5d5f643daf8dd 278 SUPERFAMILY SSF52540 36 276 2.44E-56 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0946 f505e0ea49fcb248fdc5d5f643daf8dd 278 Pfam PF00005 ABC transporter 53 207 1.7E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0946 f505e0ea49fcb248fdc5d5f643daf8dd 278 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 37 278 3.8E-112 T 14-10-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD YP_0946 f505e0ea49fcb248fdc5d5f643daf8dd 278 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 255 277 8.5E-8 T 14-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal YP_0946 f505e0ea49fcb248fdc5d5f643daf8dd 278 Gene3D G3DSA:3.40.50.300 21 276 3.4E-55 T 14-10-2018 YP_3367 99aec5896f0510c993b18efee7e590b5 587 Pfam PF08479 POTRA domain, ShlB-type 90 165 1.7E-16 T 14-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type YP_3367 99aec5896f0510c993b18efee7e590b5 587 Gene3D G3DSA:2.40.160.50 196 587 1.0E-62 T 14-10-2018 YP_3367 99aec5896f0510c993b18efee7e590b5 587 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 227 551 6.7E-72 T 14-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal YP_3367 99aec5896f0510c993b18efee7e590b5 587 Pfam PF17287 POTRA domain 166 218 4.6E-15 T 14-10-2018 IPR035251 ShlB, POTRA domain YP_3367 99aec5896f0510c993b18efee7e590b5 587 PIRSF PIRSF029745 3 587 6.8E-183 T 14-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 YP_3487 8a99478927e5bbdd58be4520f3495d61 362 SUPERFAMILY SSF53955 158 360 9.01E-36 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_3487 8a99478927e5bbdd58be4520f3495d61 362 Gene3D G3DSA:1.10.530.10 181 358 4.6E-49 T 14-10-2018 YP_3487 8a99478927e5bbdd58be4520f3495d61 362 Hamap MF_01616 Membrane-bound lytic murein transglycosylase C [mltC]. 5 361 60.613 T 14-10-2018 IPR023664 Murein transglycosylase-C GO:0009279|GO:0016798|GO:0016998 YP_3487 8a99478927e5bbdd58be4520f3495d61 362 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 216 244 - T 14-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 YP_3487 8a99478927e5bbdd58be4520f3495d61 362 Pfam PF11873 Domain of unknown function (DUF3393) 7 194 1.8E-77 T 14-10-2018 IPR024570 Murein transglycosylase-C, N-terminal YP_3487 8a99478927e5bbdd58be4520f3495d61 362 Pfam PF01464 Transglycosylase SLT domain 199 320 1.2E-32 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 YP_0068 8038d88a40870595258e6de0f9e84ed5 339 PIRSF PIRSF000114 1 336 2.8E-100 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YP_0068 8038d88a40870595258e6de0f9e84ed5 339 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 8 162 3.1E-50 T 14-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YP_0068 8038d88a40870595258e6de0f9e84ed5 339 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 6 326 38.166 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YP_0068 8038d88a40870595258e6de0f9e84ed5 339 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 192 213 - T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YP_0068 8038d88a40870595258e6de0f9e84ed5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 202 226 8.8E-41 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YP_0068 8038d88a40870595258e6de0f9e84ed5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 60 87 8.8E-41 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YP_0068 8038d88a40870595258e6de0f9e84ed5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 136 156 8.8E-41 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YP_0068 8038d88a40870595258e6de0f9e84ed5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 10 27 8.8E-41 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YP_0068 8038d88a40870595258e6de0f9e84ed5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 177 201 8.8E-41 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YP_0068 8038d88a40870595258e6de0f9e84ed5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 242 259 8.8E-41 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YP_0068 8038d88a40870595258e6de0f9e84ed5 339 Gene3D G3DSA:3.40.50.720 2 191 4.3E-55 T 14-10-2018 YP_0068 8038d88a40870595258e6de0f9e84ed5 339 SUPERFAMILY SSF48179 184 335 2.44E-58 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_0068 8038d88a40870595258e6de0f9e84ed5 339 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 184 323 7.1E-53 T 14-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YP_0068 8038d88a40870595258e6de0f9e84ed5 339 Gene3D G3DSA:1.10.1040.10 193 338 4.2E-53 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YP_0068 8038d88a40870595258e6de0f9e84ed5 339 SUPERFAMILY SSF51735 8 182 3.7E-52 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3318 c8ed296debedd4ec0848a0b133f0b975 231 Gene3D G3DSA:2.60.120.10 11 135 1.1E-98 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_3318 c8ed296debedd4ec0848a0b133f0b975 231 Gene3D G3DSA:2.60.120.10 7 229 1.1E-98 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_3318 c8ed296debedd4ec0848a0b133f0b975 231 Pfam PF02678 Pirin 11 119 2.0E-37 T 14-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 YP_3318 c8ed296debedd4ec0848a0b133f0b975 231 PIRSF PIRSF006232 1 231 3.9E-55 T 14-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 YP_3318 c8ed296debedd4ec0848a0b133f0b975 231 SUPERFAMILY SSF51182 1 231 1.4E-79 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily YP_2515 5f1094738f6cca4777a1a31598f0e882 191 SUPERFAMILY SSF88659 122 183 1.63E-18 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_2515 5f1094738f6cca4777a1a31598f0e882 191 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 46 77 - T 14-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YP_2515 5f1094738f6cca4777a1a31598f0e882 191 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 1 189 1.4E-99 T 14-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YP_2515 5f1094738f6cca4777a1a31598f0e882 191 Gene3D G3DSA:1.10.1740.10 1 120 1.5E-46 T 14-10-2018 YP_2515 5f1094738f6cca4777a1a31598f0e882 191 Pfam PF04542 Sigma-70 region 2 25 91 1.2E-16 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 YP_2515 5f1094738f6cca4777a1a31598f0e882 191 Gene3D G3DSA:1.10.10.10 121 191 1.5E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2515 5f1094738f6cca4777a1a31598f0e882 191 Pfam PF08281 Sigma-70, region 4 129 180 7.5E-19 T 14-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YP_2515 5f1094738f6cca4777a1a31598f0e882 191 SUPERFAMILY SSF88946 2 103 6.75E-30 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 YP_2515 5f1094738f6cca4777a1a31598f0e882 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 183 1.1E-30 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 YP_2526 1c661d56ddb0128124d64094ea58a160 126 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 5 122 7.6E-27 T 14-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 YP_2526 1c661d56ddb0128124d64094ea58a160 126 Gene3D G3DSA:3.90.470.20 1 126 5.9E-40 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 YP_2526 1c661d56ddb0128124d64094ea58a160 126 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 9 93 1.0E-44 T 14-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 YP_2526 1c661d56ddb0128124d64094ea58a160 126 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 4 126 26.412 T 14-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 YP_2526 1c661d56ddb0128124d64094ea58a160 126 SUPERFAMILY SSF56214 3 125 2.49E-30 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 YP_2526 1c661d56ddb0128124d64094ea58a160 126 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 3 126 3.1E-37 T 14-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 YP_2526 1c661d56ddb0128124d64094ea58a160 126 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 2 126 6.0E-53 T 14-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 Hamap MF_00430 Na(+)-translocating NADH-quinone reductase subunit F [nqrF]. 1 407 62.818 T 14-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 TIGRFAM TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit 3 407 9.4E-236 T 14-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 SUPERFAMILY SSF63380 105 272 4.86E-35 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 Gene3D G3DSA:2.40.30.10 126 264 1.4E-48 T 14-10-2018 YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 Pfam PF00970 Oxidoreductase FAD-binding domain 202 266 1.6E-8 T 14-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 Gene3D G3DSA:3.10.20.30 34 125 2.9E-30 T 14-10-2018 IPR012675 Beta-grasp domain superfamily YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 Gene3D G3DSA:3.40.50.80 275 393 1.4E-34 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 Pfam PF00175 Oxidoreductase NAD-binding domain 277 386 5.0E-19 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 PIRSF PIRSF000044 1 407 8.5E-218 T 14-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 242 251 1.2E-6 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 373 381 1.2E-6 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 209 216 1.2E-6 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 276 295 1.2E-6 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 314 325 1.2E-6 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 SUPERFAMILY SSF54292 35 124 1.06E-22 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 41 114 1.9E-10 T 14-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 YP_0698 5f76db85061ae0ec18f77df5f6185b7d 407 SUPERFAMILY SSF52343 255 402 1.96E-38 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_2324 b1cfc02a63b8cb6291c0ebd5c698d28c 258 Pfam PF13649 Methyltransferase domain 36 124 1.4E-13 T 14-10-2018 YP_2324 b1cfc02a63b8cb6291c0ebd5c698d28c 258 Gene3D G3DSA:3.40.50.150 9 254 5.8E-86 T 14-10-2018 YP_2324 b1cfc02a63b8cb6291c0ebd5c698d28c 258 Hamap MF_00560 Trans-aconitate 2-methyltransferase [tam]. 2 257 43.271 T 14-10-2018 IPR023506 Trans-aconitate 2-methyltransferase GO:0030798 YP_2324 b1cfc02a63b8cb6291c0ebd5c698d28c 258 Gene3D G3DSA:1.10.150.290 132 237 5.8E-86 T 14-10-2018 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 YP_2324 b1cfc02a63b8cb6291c0ebd5c698d28c 258 SUPERFAMILY SSF53335 6 210 1.53E-31 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3088 90a79dde1570a37d36a64a44f1f12041 532 Gene3D G3DSA:1.20.1220.12 411 532 8.3E-50 T 14-10-2018 YP_3088 90a79dde1570a37d36a64a44f1f12041 532 Gene3D G3DSA:3.20.20.360 2 410 5.0E-195 T 14-10-2018 YP_3088 90a79dde1570a37d36a64a44f1f12041 532 PIRSF PIRSF001363 2 532 3.8E-249 T 14-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 YP_3088 90a79dde1570a37d36a64a44f1f12041 532 Pfam PF01274 Malate synthase 12 531 2.8E-207 T 14-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 YP_3088 90a79dde1570a37d36a64a44f1f12041 532 SUPERFAMILY SSF51645 11 531 7.46E-188 T 14-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 YP_3088 90a79dde1570a37d36a64a44f1f12041 532 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 23 531 3.0E-251 T 14-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 YP_3267 51d8c302f0a166370563b9fc97ae40e1 501 Pfam PF02646 RmuC family 171 467 6.4E-105 T 14-10-2018 IPR003798 DNA recombination RmuC YP_3913 9d15576d26a25d81d88a1850126fc3d6 498 SUPERFAMILY SSF52540 7 233 1.15E-57 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3913 9d15576d26a25d81d88a1850126fc3d6 498 Gene3D G3DSA:3.40.50.300 254 497 4.6E-43 T 14-10-2018 YP_3913 9d15576d26a25d81d88a1850126fc3d6 498 SMART SM00382 32 222 1.0E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3913 9d15576d26a25d81d88a1850126fc3d6 498 SMART SM00382 282 477 0.0012 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3913 9d15576d26a25d81d88a1850126fc3d6 498 Pfam PF00005 ABC transporter 274 428 2.5E-22 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3913 9d15576d26a25d81d88a1850126fc3d6 498 Pfam PF00005 ABC transporter 23 174 2.1E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3913 9d15576d26a25d81d88a1850126fc3d6 498 ProSitePatterns PS00211 ABC transporters family signature. 401 415 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3913 9d15576d26a25d81d88a1850126fc3d6 498 Gene3D G3DSA:3.40.50.300 2 238 3.1E-59 T 14-10-2018 YP_3913 9d15576d26a25d81d88a1850126fc3d6 498 SUPERFAMILY SSF52540 272 488 6.86E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0324 6e195cdab7d84613603b41d1ddfe8cec 111 Pfam PF12084 Protein of unknown function (DUF3561) 7 110 1.6E-47 T 14-10-2018 IPR022721 Protein of unknown function DUF3561 YP_0324 6e195cdab7d84613603b41d1ddfe8cec 111 ProDom PD070788 MEMBRANE OXIDASE SUBUNIT CYTOCHROME YGBE INNER STY3057 TRANSMEMBRANE 7 111 1.0E-54 T 14-10-2018 IPR022721 Protein of unknown function DUF3561 YP_1323 5cab8f89754fab6cfe4cb8fbd83502f2 585 Gene3D G3DSA:3.40.50.300 1 168 1.9E-28 T 14-10-2018 YP_1323 5cab8f89754fab6cfe4cb8fbd83502f2 585 SMART SM00487 1 185 1.4E-16 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_1323 5cab8f89754fab6cfe4cb8fbd83502f2 585 SUPERFAMILY SSF57829 424 466 3.3E-7 T 14-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 YP_1323 5cab8f89754fab6cfe4cb8fbd83502f2 585 Gene3D G3DSA:3.40.50.300 186 376 1.2E-33 T 14-10-2018 YP_1323 5cab8f89754fab6cfe4cb8fbd83502f2 585 Pfam PF00271 Helicase conserved C-terminal domain 242 343 1.0E-11 T 14-10-2018 IPR001650 Helicase, C-terminal YP_1323 5cab8f89754fab6cfe4cb8fbd83502f2 585 Pfam PF04851 Type III restriction enzyme, res subunit 3 155 5.1E-24 T 14-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 YP_1323 5cab8f89754fab6cfe4cb8fbd83502f2 585 SUPERFAMILY SSF52540 50 359 9.27E-38 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1323 5cab8f89754fab6cfe4cb8fbd83502f2 585 SMART SM00490 263 345 2.0E-9 T 14-10-2018 IPR001650 Helicase, C-terminal YP_0014 2e1dd3b5d2b6b0d4ba015e4d7893885a 213 Gene3D G3DSA:3.90.550.10 18 212 8.3E-56 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_0014 2e1dd3b5d2b6b0d4ba015e4d7893885a 213 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 21 206 29.053 T 14-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 YP_0014 2e1dd3b5d2b6b0d4ba015e4d7893885a 213 Pfam PF12804 MobA-like NTP transferase domain 25 174 7.6E-34 T 14-10-2018 IPR025877 MobA-like NTP transferase YP_0014 2e1dd3b5d2b6b0d4ba015e4d7893885a 213 SUPERFAMILY SSF53448 21 202 1.36E-33 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_0014 2e1dd3b5d2b6b0d4ba015e4d7893885a 213 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 23 203 3.5E-67 T 14-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 YP_2623 1d11ec06d6811a37e6ab5659e0aebc7a 227 SUPERFAMILY SSF52172 1 123 3.56E-36 T 14-10-2018 IPR011006 CheY-like superfamily YP_2623 1d11ec06d6811a37e6ab5659e0aebc7a 227 SUPERFAMILY SSF46894 126 226 3.4E-25 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_2623 1d11ec06d6811a37e6ab5659e0aebc7a 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 226 9.5E-21 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_2623 1d11ec06d6811a37e6ab5659e0aebc7a 227 Gene3D G3DSA:3.40.50.2300 1 119 5.6E-32 T 14-10-2018 YP_2623 1d11ec06d6811a37e6ab5659e0aebc7a 227 Pfam PF00072 Response regulator receiver domain 3 111 4.8E-21 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_2623 1d11ec06d6811a37e6ab5659e0aebc7a 227 SMART SM00448 1 111 1.0E-37 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_2623 1d11ec06d6811a37e6ab5659e0aebc7a 227 Gene3D G3DSA:1.10.10.10 120 227 8.3E-29 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2623 1d11ec06d6811a37e6ab5659e0aebc7a 227 SMART SM00862 150 226 8.6E-22 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_1961 3d5fe570a9d93358321e34f76f3d8de5 338 Pfam PF00710 Asparaginase, N-terminal 6 188 1.9E-63 T 14-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 YP_1961 3d5fe570a9d93358321e34f76f3d8de5 338 Gene3D G3DSA:3.40.50.1170 1 208 2.0E-92 T 14-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 YP_1961 3d5fe570a9d93358321e34f76f3d8de5 338 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 3 335 7.0E-128 T 14-10-2018 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 Reactome: R-HSA-70614 YP_1961 3d5fe570a9d93358321e34f76f3d8de5 338 SUPERFAMILY SSF53774 3 335 6.15E-111 T 14-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 YP_1961 3d5fe570a9d93358321e34f76f3d8de5 338 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 8 16 - T 14-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 YP_1961 3d5fe570a9d93358321e34f76f3d8de5 338 SMART SM00870 5 323 2.0E-138 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YP_1961 3d5fe570a9d93358321e34f76f3d8de5 338 PIRSF PIRSF500176 2 332 4.0E-113 T 14-10-2018 YP_1961 3d5fe570a9d93358321e34f76f3d8de5 338 PIRSF PIRSF001220 1 334 3.0E-99 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YP_1961 3d5fe570a9d93358321e34f76f3d8de5 338 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 84 94 - T 14-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 YP_1961 3d5fe570a9d93358321e34f76f3d8de5 338 Gene3D G3DSA:3.40.50.40 209 338 1.1E-48 T 14-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 YP_1961 3d5fe570a9d93358321e34f76f3d8de5 338 PRINTS PR00139 Asparaginase/glutaminase family signature 6 17 1.0E-16 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YP_1961 3d5fe570a9d93358321e34f76f3d8de5 338 PRINTS PR00139 Asparaginase/glutaminase family signature 83 101 1.0E-16 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YP_1961 3d5fe570a9d93358321e34f76f3d8de5 338 PRINTS PR00139 Asparaginase/glutaminase family signature 260 278 1.0E-16 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YP_2874 b83e57b0876766d6b8765828fbccbc68 290 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 1 286 4.0E-106 T 14-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 YP_2874 b83e57b0876766d6b8765828fbccbc68 290 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 13 280 3.3E-80 T 14-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 YP_2874 b83e57b0876766d6b8765828fbccbc68 290 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 285 20.37 T 14-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 YP_2874 b83e57b0876766d6b8765828fbccbc68 290 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 142 154 - T 14-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 YP_2169 f870dfdacd97f3152d1feb8a7e2404ed 121 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 9 105 4.4E-47 T 14-10-2018 IPR004480 Monothiol glutaredoxin-related YP_2169 f870dfdacd97f3152d1feb8a7e2404ed 121 SUPERFAMILY SSF52833 7 106 1.05E-35 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_2169 f870dfdacd97f3152d1feb8a7e2404ed 121 PIRSF PIRSF005894 2 112 1.3E-52 T 14-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 YP_2169 f870dfdacd97f3152d1feb8a7e2404ed 121 Pfam PF00462 Glutaredoxin 21 85 1.0E-18 T 14-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 YP_2169 f870dfdacd97f3152d1feb8a7e2404ed 121 Gene3D G3DSA:3.40.30.10 6 112 3.0E-33 T 14-10-2018 YP_3840 a244dc774694a26f5d2637ed2bd321f3 284 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 281 40.858 T 14-10-2018 IPR005337 RapZ-like family GO:0005524 YP_3840 a244dc774694a26f5d2637ed2bd321f3 284 SUPERFAMILY SSF52540 2 151 3.19E-12 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3840 a244dc774694a26f5d2637ed2bd321f3 284 Pfam PF03668 P-loop ATPase protein family 1 282 6.1E-144 T 14-10-2018 IPR005337 RapZ-like family GO:0005524 YP_3840 a244dc774694a26f5d2637ed2bd321f3 284 PIRSF PIRSF005052 1 284 5.6E-114 T 14-10-2018 IPR005337 RapZ-like family GO:0005524 YP_1643 feb760a2bdc1e784a242c24cd55802cf 69 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 3 65 7.3E-21 T 14-10-2018 IPR012783 Zinc finger, C4 DksA/TraR-type YP_1643 feb760a2bdc1e784a242c24cd55802cf 69 Gene3D G3DSA:1.20.120.910 3 69 5.4E-15 T 14-10-2018 YP_1643 feb760a2bdc1e784a242c24cd55802cf 69 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 32 66 4.2E-11 T 14-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 YP_1643 feb760a2bdc1e784a242c24cd55802cf 69 SUPERFAMILY SSF57716 35 68 1.43E-7 T 14-10-2018 YP_1133 c992d499873110df1a713eca079ee9a5 515 Pfam PF00005 ABC transporter 282 437 7.1E-21 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1133 c992d499873110df1a713eca079ee9a5 515 Gene3D G3DSA:3.40.50.300 268 512 1.1E-43 T 14-10-2018 YP_1133 c992d499873110df1a713eca079ee9a5 515 Gene3D G3DSA:3.40.50.300 1 237 1.8E-54 T 14-10-2018 YP_1133 c992d499873110df1a713eca079ee9a5 515 SUPERFAMILY SSF52540 278 494 1.21E-45 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1133 c992d499873110df1a713eca079ee9a5 515 Pfam PF00005 ABC transporter 21 172 2.1E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1133 c992d499873110df1a713eca079ee9a5 515 ProSitePatterns PS00211 ABC transporters family signature. 410 424 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1133 c992d499873110df1a713eca079ee9a5 515 SUPERFAMILY SSF52540 4 224 3.52E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1133 c992d499873110df1a713eca079ee9a5 515 SMART SM00382 291 497 3.0E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1133 c992d499873110df1a713eca079ee9a5 515 SMART SM00382 30 251 1.7E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1499 388a2ca9030913d0edc14e5fde31e936 286 SUPERFAMILY SSF161098 51 275 1.44E-60 T 14-10-2018 IPR035906 MetI-like superfamily YP_1499 388a2ca9030913d0edc14e5fde31e936 286 Gene3D G3DSA:1.10.3720.10 46 285 7.1E-70 T 14-10-2018 IPR035906 MetI-like superfamily YP_1499 388a2ca9030913d0edc14e5fde31e936 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 276 3.3E-17 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2010 e3aafa216877091992928bf55c56ef07 344 SUPERFAMILY SSF55120 95 259 5.55E-45 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_2010 e3aafa216877091992928bf55c56ef07 344 Pfam PF01479 S4 domain 30 70 3.4E-11 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_2010 e3aafa216877091992928bf55c56ef07 344 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 99 259 5.1E-63 T 14-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 YP_2010 e3aafa216877091992928bf55c56ef07 344 Gene3D G3DSA:3.30.2350.10 89 277 1.1E-53 T 14-10-2018 YP_2010 e3aafa216877091992928bf55c56ef07 344 SUPERFAMILY SSF55174 31 124 2.21E-13 T 14-10-2018 YP_2010 e3aafa216877091992928bf55c56ef07 344 SMART SM00363 29 100 6.4E-10 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_2010 e3aafa216877091992928bf55c56ef07 344 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 133 147 - T 14-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 YP_2010 e3aafa216877091992928bf55c56ef07 344 Pfam PF00849 RNA pseudouridylate synthase 95 225 1.9E-17 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_2010 e3aafa216877091992928bf55c56ef07 344 Gene3D G3DSA:3.10.290.10 26 87 1.1E-20 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YP_2307 fde907190ed3850acc07eee7834a4199 321 SUPERFAMILY SSF54292 216 319 1.31E-22 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YP_2307 fde907190ed3850acc07eee7834a4199 321 Gene3D G3DSA:3.10.20.30 225 321 7.5E-21 T 14-10-2018 IPR012675 Beta-grasp domain superfamily YP_2307 fde907190ed3850acc07eee7834a4199 321 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 270 278 - T 14-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 YP_2307 fde907190ed3850acc07eee7834a4199 321 Gene3D G3DSA:2.40.30.10 2 105 8.6E-24 T 14-10-2018 YP_2307 fde907190ed3850acc07eee7834a4199 321 Pfam PF00175 Oxidoreductase NAD-binding domain 117 206 6.1E-5 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 YP_2307 fde907190ed3850acc07eee7834a4199 321 Gene3D G3DSA:3.40.50.80 106 224 1.6E-22 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_2307 fde907190ed3850acc07eee7834a4199 321 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 241 312 3.2E-10 T 14-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 YP_2307 fde907190ed3850acc07eee7834a4199 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 94 108 1.5E-25 T 14-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 YP_2307 fde907190ed3850acc07eee7834a4199 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 193 201 1.5E-25 T 14-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 YP_2307 fde907190ed3850acc07eee7834a4199 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 116 135 1.5E-25 T 14-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 YP_2307 fde907190ed3850acc07eee7834a4199 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 31 41 1.5E-25 T 14-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 YP_2307 fde907190ed3850acc07eee7834a4199 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 80 94 1.5E-25 T 14-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 YP_2307 fde907190ed3850acc07eee7834a4199 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 141 150 1.5E-25 T 14-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 YP_2307 fde907190ed3850acc07eee7834a4199 321 Pfam PF00970 Oxidoreductase FAD-binding domain 9 103 2.7E-7 T 14-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 YP_2307 fde907190ed3850acc07eee7834a4199 321 SUPERFAMILY SSF52343 106 227 4.45E-24 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_2307 fde907190ed3850acc07eee7834a4199 321 Hamap MF_02098 Carnitine monooxygenase reductase subunit. 7 321 85.476 T 14-10-2018 IPR039003 Carnitine monooxygenase reductase subunit GO:0009437 YP_2307 fde907190ed3850acc07eee7834a4199 321 SUPERFAMILY SSF63380 3 104 1.51E-22 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YP_1286 3646f667efe2f42bbcf3731ff5c0f9e6 294 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 78 86 - T 14-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 YP_1286 3646f667efe2f42bbcf3731ff5c0f9e6 294 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 224 240 - T 14-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 YP_1286 3646f667efe2f42bbcf3731ff5c0f9e6 294 SUPERFAMILY SSF51658 10 288 2.23E-99 T 14-10-2018 IPR036237 Xylose isomerase-like superfamily YP_1286 3646f667efe2f42bbcf3731ff5c0f9e6 294 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 184 191 - T 14-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 YP_1286 3646f667efe2f42bbcf3731ff5c0f9e6 294 Hamap MF_00152 Probable endonuclease 4 [nfo]. 11 288 42.751 T 14-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 YP_1286 3646f667efe2f42bbcf3731ff5c0f9e6 294 Gene3D G3DSA:3.20.20.150 10 291 1.4E-109 T 14-10-2018 YP_1286 3646f667efe2f42bbcf3731ff5c0f9e6 294 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 12 285 1.2E-106 T 14-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 YP_1286 3646f667efe2f42bbcf3731ff5c0f9e6 294 Pfam PF01261 Xylose isomerase-like TIM barrel 29 248 1.6E-41 T 14-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain YP_1286 3646f667efe2f42bbcf3731ff5c0f9e6 294 SMART SM00518 12 288 1.2E-128 T 14-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 469 479 3.8E-24 T 14-10-2018 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 311 325 3.8E-24 T 14-10-2018 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 522 541 3.8E-24 T 14-10-2018 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 545 557 3.8E-24 T 14-10-2018 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 154 168 3.8E-24 T 14-10-2018 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 Pfam PF00122 E1-E2 ATPase 115 288 1.1E-31 T 14-10-2018 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 Gene3D G3DSA:2.70.150.20 106 212 7.0E-26 T 14-10-2018 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 SUPERFAMILY SSF81665 60 305 1.7E-9 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 8 686 41.102 T 14-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 Gene3D G3DSA:3.40.1110.10 322 457 3.7E-55 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 SUPERFAMILY SSF56784 299 565 1.27E-38 T 14-10-2018 IPR036412 HAD-like superfamily YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 SUPERFAMILY SSF81653 115 207 1.7E-20 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 313 319 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 Pfam PF00702 haloacid dehalogenase-like hydrolase 307 536 4.4E-36 T 14-10-2018 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 72 347 1.1E-33 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 378 610 1.3E-48 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 SUPERFAMILY SSF81660 322 456 5.89E-37 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 YP_2494 614a60944c80ef9fc0f4376509d23f0c 688 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 3 683 0.0 T 14-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 YP_3825 63758fe31c5ba44fd18fb97135ac76d3 87 PIRSF PIRSF003113 1 86 1.3E-22 T 14-10-2018 IPR002634 BolA protein YP_3825 63758fe31c5ba44fd18fb97135ac76d3 87 SUPERFAMILY SSF82657 4 85 5.36E-30 T 14-10-2018 IPR036065 BolA-like superfamily YP_3825 63758fe31c5ba44fd18fb97135ac76d3 87 Gene3D G3DSA:3.30.300.90 1 87 3.2E-37 T 14-10-2018 YP_3825 63758fe31c5ba44fd18fb97135ac76d3 87 Pfam PF01722 BolA-like protein 22 77 1.2E-15 T 14-10-2018 IPR002634 BolA protein YP_3872 3eb66830aa62e6d364137423c9aff4cb 952 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 589 669 1.8E-27 T 14-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 YP_3872 3eb66830aa62e6d364137423c9aff4cb 952 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 221 249 3.0E-4 T 14-10-2018 IPR006530 YD repeat YP_3872 3eb66830aa62e6d364137423c9aff4cb 952 SUPERFAMILY SSF52799 836 908 2.4E-7 T 14-10-2018 IPR029021 Protein-tyrosine phosphatase-like YP_3872 3eb66830aa62e6d364137423c9aff4cb 952 Gene3D G3DSA:3.90.190.10 753 941 2.0E-7 T 14-10-2018 IPR029021 Protein-tyrosine phosphatase-like YP_3872 3eb66830aa62e6d364137423c9aff4cb 952 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 859 869 - T 14-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 YP_3872 3eb66830aa62e6d364137423c9aff4cb 952 Gene3D G3DSA:2.180.10.10 5 669 7.6E-237 T 14-10-2018 YP_1711 06d180eb8604d755af9155a15523e966 331 SUPERFAMILY SSF53187 2 321 7.61E-88 T 14-10-2018 YP_1711 06d180eb8604d755af9155a15523e966 331 TIGRFAM TIGR03242 arg_catab_astE: succinylglutamate desuccinylase 4 321 9.7E-153 T 14-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 YP_1711 06d180eb8604d755af9155a15523e966 331 PIRSF PIRSF017020 1 328 5.4E-125 T 14-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 YP_1711 06d180eb8604d755af9155a15523e966 331 Gene3D G3DSA:3.40.630.10 2 328 9.4E-112 T 14-10-2018 YP_1711 06d180eb8604d755af9155a15523e966 331 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 331 147.72 T 14-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 YP_1711 06d180eb8604d755af9155a15523e966 331 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 45 323 2.3E-73 T 14-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 YP_2115 de2b91b694d23e9a13a81a087e217b42 330 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 9 328 2.6E-32 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 YP_2115 de2b91b694d23e9a13a81a087e217b42 330 SUPERFAMILY SSF52283 2 135 2.46E-44 T 14-10-2018 YP_2115 de2b91b694d23e9a13a81a087e217b42 330 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 297 5.8E-54 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 YP_2115 de2b91b694d23e9a13a81a087e217b42 330 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 14-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YP_2115 de2b91b694d23e9a13a81a087e217b42 330 SUPERFAMILY SSF51735 102 298 1.29E-54 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2115 de2b91b694d23e9a13a81a087e217b42 330 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YP_2115 de2b91b694d23e9a13a81a087e217b42 330 Gene3D G3DSA:3.40.50.720 2 317 2.3E-138 T 14-10-2018 YP_2115 de2b91b694d23e9a13a81a087e217b42 330 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YP_2115 de2b91b694d23e9a13a81a087e217b42 330 Gene3D G3DSA:3.40.50.720 102 297 2.3E-138 T 14-10-2018 YP_1015 ac4de76645876135c98894a466816851 259 PIRSF PIRSF004846 2 259 1.4E-77 T 14-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 YP_1015 ac4de76645876135c98894a466816851 259 Gene3D G3DSA:3.40.190.10 32 256 4.8E-86 T 14-10-2018 YP_1015 ac4de76645876135c98894a466816851 259 Pfam PF13531 Bacterial extracellular solute-binding protein 31 256 7.4E-46 T 14-10-2018 YP_1015 ac4de76645876135c98894a466816851 259 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 36 255 1.7E-79 T 14-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 YP_1015 ac4de76645876135c98894a466816851 259 SUPERFAMILY SSF53850 29 258 1.14E-68 T 14-10-2018 YP_1015 ac4de76645876135c98894a466816851 259 Gene3D G3DSA:3.40.190.10 109 220 4.8E-86 T 14-10-2018 YP_3233 a7552cc8a8ec0e5ef82bd40f0a466252 220 Pfam PF03602 Conserved hypothetical protein 95 23 198 5.3E-62 T 14-10-2018 YP_3233 a7552cc8a8ec0e5ef82bd40f0a466252 220 Gene3D G3DSA:3.40.50.150 11 208 2.2E-63 T 14-10-2018 YP_3233 a7552cc8a8ec0e5ef82bd40f0a466252 220 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 135 141 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YP_3233 a7552cc8a8ec0e5ef82bd40f0a466252 220 SUPERFAMILY SSF53335 22 199 5.58E-54 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3233 a7552cc8a8ec0e5ef82bd40f0a466252 220 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 18 200 1.0E-64 T 14-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 YP_3233 a7552cc8a8ec0e5ef82bd40f0a466252 220 PIRSF PIRSF004553 22 202 3.5E-59 T 14-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 YP_1702 5b9249e7be1416a06c33128d9a16134b 262 SUPERFAMILY SSF52540 57 239 7.09E-31 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1702 5b9249e7be1416a06c33128d9a16134b 262 Pfam PF02562 PhoH-like protein 57 261 1.8E-77 T 14-10-2018 IPR003714 PhoH-like protein GO:0005524 YP_1702 5b9249e7be1416a06c33128d9a16134b 262 Gene3D G3DSA:3.40.50.300 54 262 2.0E-65 T 14-10-2018 YP_2608 787d9699f6e2f6629474e373a0bbe5ca 394 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 10 81 2.3E-16 T 14-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 YP_2608 787d9699f6e2f6629474e373a0bbe5ca 394 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 193 392 2.5E-59 T 14-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 YP_2608 787d9699f6e2f6629474e373a0bbe5ca 394 Pfam PF07670 Nucleoside recognition 92 190 1.3E-7 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 YP_2784 9bf2c83e18478bb7292479e65d07022a 204 SMART SM01322 23 198 7.4E-117 T 14-10-2018 IPR009822 YaeQ YP_2784 9bf2c83e18478bb7292479e65d07022a 204 SUPERFAMILY SSF52980 26 200 4.29E-70 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 YP_2784 9bf2c83e18478bb7292479e65d07022a 204 Gene3D G3DSA:3.10.640.10 21 203 1.8E-75 T 14-10-2018 IPR038590 YaeQ superfamily YP_2784 9bf2c83e18478bb7292479e65d07022a 204 Pfam PF07152 YaeQ protein 23 195 3.8E-74 T 14-10-2018 IPR009822 YaeQ YP_2784 9bf2c83e18478bb7292479e65d07022a 204 PIRSF PIRSF011484 23 202 3.6E-68 T 14-10-2018 IPR009822 YaeQ YP_1198 41a79e96be3c20b67ba785a71f55a2db 539 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 1 538 3.5E-251 T 14-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 YP_1198 41a79e96be3c20b67ba785a71f55a2db 539 SMART SM00382 325 512 2.0E-19 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1198 41a79e96be3c20b67ba785a71f55a2db 539 Pfam PF00664 ABC transporter transmembrane region 3 254 2.1E-58 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YP_1198 41a79e96be3c20b67ba785a71f55a2db 539 Pfam PF00005 ABC transporter 316 466 6.2E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1198 41a79e96be3c20b67ba785a71f55a2db 539 SUPERFAMILY SSF90123 3 284 1.07E-68 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_1198 41a79e96be3c20b67ba785a71f55a2db 539 ProSitePatterns PS00211 ABC transporters family signature. 438 452 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1198 41a79e96be3c20b67ba785a71f55a2db 539 Gene3D G3DSA:3.40.50.300 286 538 9.2E-96 T 14-10-2018 YP_1198 41a79e96be3c20b67ba785a71f55a2db 539 SUPERFAMILY SSF52540 289 537 3.18E-95 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1198 41a79e96be3c20b67ba785a71f55a2db 539 Gene3D G3DSA:1.20.1560.10 1 285 4.4E-73 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_0818 812e1749fe0cfa1502dc52a8f4a370f0 265 Gene3D G3DSA:3.90.25.10 133 260 2.8E-27 T 14-10-2018 YP_0818 812e1749fe0cfa1502dc52a8f4a370f0 265 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 195 3.0E-19 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YP_0818 812e1749fe0cfa1502dc52a8f4a370f0 265 SUPERFAMILY SSF51735 4 263 1.36E-35 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0818 812e1749fe0cfa1502dc52a8f4a370f0 265 Gene3D G3DSA:3.40.50.720 28 195 2.8E-27 T 14-10-2018 YP_1864 05645f6055dae49746e4c97596e0305e 441 Gene3D G3DSA:3.30.460.30 19 176 4.9E-59 T 14-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YP_1864 05645f6055dae49746e4c97596e0305e 441 PIRSF PIRSF000445 19 435 1.6E-154 T 14-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YP_1864 05645f6055dae49746e4c97596e0305e 441 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 22 433 4.0E-158 T 14-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YP_1864 05645f6055dae49746e4c97596e0305e 441 Gene3D G3DSA:3.40.50.720 179 331 9.6E-45 T 14-10-2018 YP_1864 05645f6055dae49746e4c97596e0305e 441 SUPERFAMILY SSF69742 19 176 5.75E-48 T 14-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YP_1864 05645f6055dae49746e4c97596e0305e 441 SUPERFAMILY SSF51735 180 333 9.32E-35 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1864 05645f6055dae49746e4c97596e0305e 441 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 117 140 - T 14-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YP_1864 05645f6055dae49746e4c97596e0305e 441 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 20 436 30.631 T 14-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YP_1864 05645f6055dae49746e4c97596e0305e 441 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 338 432 6.6E-23 T 14-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YP_1864 05645f6055dae49746e4c97596e0305e 441 SUPERFAMILY SSF69075 335 433 4.71E-27 T 14-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YP_1864 05645f6055dae49746e4c97596e0305e 441 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 24 174 1.5E-49 T 14-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YP_1864 05645f6055dae49746e4c97596e0305e 441 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 190 324 6.6E-49 T 14-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_0094 12ab2473351bd8b2730eb7165c727c5e 507 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 11 258 8.1E-92 T 14-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YP_0094 12ab2473351bd8b2730eb7165c727c5e 507 Hamap MF_00186 Glycerol kinase [glpK]. 9 503 60.09 T 14-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 YP_0094 12ab2473351bd8b2730eb7165c727c5e 507 Gene3D G3DSA:3.30.420.40 7 259 3.7E-116 T 14-10-2018 YP_0094 12ab2473351bd8b2730eb7165c727c5e 507 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 141 153 - T 14-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YP_0094 12ab2473351bd8b2730eb7165c727c5e 507 SUPERFAMILY SSF53067 10 261 3.89E-96 T 14-10-2018 YP_0094 12ab2473351bd8b2730eb7165c727c5e 507 PIRSF PIRSF000538 9 507 3.4E-180 T 14-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YP_0094 12ab2473351bd8b2730eb7165c727c5e 507 SUPERFAMILY SSF53067 261 503 2.96E-86 T 14-10-2018 YP_0094 12ab2473351bd8b2730eb7165c727c5e 507 Gene3D G3DSA:3.30.420.40 260 506 1.3E-95 T 14-10-2018 YP_0094 12ab2473351bd8b2730eb7165c727c5e 507 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 267 456 8.3E-63 T 14-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YP_0094 12ab2473351bd8b2730eb7165c727c5e 507 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 368 388 - T 14-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YP_0094 12ab2473351bd8b2730eb7165c727c5e 507 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 10 502 7.9E-230 T 14-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 YP_pCD36 2889c8ef0ba2de6c1b51b4eb4162e64d 354 Pfam PF01312 FlhB HrpN YscU SpaS Family 3 340 1.0E-112 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_pCD36 2889c8ef0ba2de6c1b51b4eb4162e64d 354 TIGRFAM TIGR01404 FlhB_rel_III: type III secretion protein, YscU/HrpY family 3 343 3.4E-146 T 14-10-2018 IPR006307 Type III exporter system, secretion apparatus protein BsaZ GO:0009306|GO:0016021 YP_pCD36 2889c8ef0ba2de6c1b51b4eb4162e64d 354 Gene3D G3DSA:3.40.1690.10 211 354 6.1E-54 T 14-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal YP_pCD36 2889c8ef0ba2de6c1b51b4eb4162e64d 354 SUPERFAMILY SSF160544 238 343 6.02E-31 T 14-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal YP_pCD36 2889c8ef0ba2de6c1b51b4eb4162e64d 354 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 202 220 2.0E-46 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_pCD36 2889c8ef0ba2de6c1b51b4eb4162e64d 354 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 296 317 2.0E-46 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_pCD36 2889c8ef0ba2de6c1b51b4eb4162e64d 354 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 266 281 2.0E-46 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_pCD36 2889c8ef0ba2de6c1b51b4eb4162e64d 354 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 6 28 2.0E-46 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_pCD36 2889c8ef0ba2de6c1b51b4eb4162e64d 354 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 222 239 2.0E-46 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_3971 0e0dba615559580207ab0598c7b99f9e 285 PIRSF PIRSF015626 9 285 7.4E-79 T 14-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 YP_3971 0e0dba615559580207ab0598c7b99f9e 285 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 24 285 33.141 T 14-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 YP_3971 0e0dba615559580207ab0598c7b99f9e 285 SUPERFAMILY SSF53927 36 284 1.11E-79 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 YP_3971 0e0dba615559580207ab0598c7b99f9e 285 Gene3D G3DSA:3.10.20.10 51 136 3.4E-10 T 14-10-2018 YP_3971 0e0dba615559580207ab0598c7b99f9e 285 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 45 285 3.5E-88 T 14-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 YP_3971 0e0dba615559580207ab0598c7b99f9e 285 Gene3D G3DSA:3.40.140.10 138 285 1.4E-45 T 14-10-2018 YP_3971 0e0dba615559580207ab0598c7b99f9e 285 Pfam PF02634 FdhD/NarQ family 49 284 1.3E-71 T 14-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 YP_2363 6adbd7c38926e7353f3b315a0d98a1de 187 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 45 186 2.1E-50 T 14-10-2018 YP_2363 6adbd7c38926e7353f3b315a0d98a1de 187 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 144 162 - T 14-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2363 6adbd7c38926e7353f3b315a0d98a1de 187 SUPERFAMILY SSF52833 36 186 4.58E-49 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_2363 6adbd7c38926e7353f3b315a0d98a1de 187 Gene3D G3DSA:1.10.10.1590 33 103 8.8E-18 T 14-10-2018 YP_2363 6adbd7c38926e7353f3b315a0d98a1de 187 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 43 186 7.1E-53 T 14-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2363 6adbd7c38926e7353f3b315a0d98a1de 187 PIRSF PIRSF000216 17 187 5.5E-53 T 14-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2363 6adbd7c38926e7353f3b315a0d98a1de 187 Gene3D G3DSA:3.40.30.10 104 186 3.4E-23 T 14-10-2018 YP_0923 71c1a417ed3b7619887c34bf110f9c5c 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 433 444 9.5E-38 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_0923 71c1a417ed3b7619887c34bf110f9c5c 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 473 496 9.5E-38 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_0923 71c1a417ed3b7619887c34bf110f9c5c 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 511 533 9.5E-38 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_0923 71c1a417ed3b7619887c34bf110f9c5c 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 610 637 9.5E-38 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_0923 71c1a417ed3b7619887c34bf110f9c5c 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 539 562 9.5E-38 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_0923 71c1a417ed3b7619887c34bf110f9c5c 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 298 317 9.5E-38 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_0923 71c1a417ed3b7619887c34bf110f9c5c 762 SUPERFAMILY SSF48168 10 221 1.44E-72 T 14-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_0923 71c1a417ed3b7619887c34bf110f9c5c 762 Pfam PF03477 ATP cone domain 6 92 8.4E-16 T 14-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 YP_0923 71c1a417ed3b7619887c34bf110f9c5c 762 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 599 621 - T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_0923 71c1a417ed3b7619887c34bf110f9c5c 762 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 141 219 4.0E-12 T 14-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_0923 71c1a417ed3b7619887c34bf110f9c5c 762 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 145 735 4.7E-178 T 14-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_0923 71c1a417ed3b7619887c34bf110f9c5c 762 SUPERFAMILY SSF51998 222 741 5.49E-168 T 14-10-2018 YP_0923 71c1a417ed3b7619887c34bf110f9c5c 762 Pfam PF02867 Ribonucleotide reductase, barrel domain 223 731 2.6E-116 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_0923 71c1a417ed3b7619887c34bf110f9c5c 762 Gene3D G3DSA:1.10.1650.20 341 394 1.4E-155 T 14-10-2018 YP_0923 71c1a417ed3b7619887c34bf110f9c5c 762 Gene3D G3DSA:3.20.70.20 209 732 1.4E-155 T 14-10-2018 YP_0400 2833bbfeabfba3538ea1e8e9752d4067 385 SUPERFAMILY SSF53850 104 290 1.63E-56 T 14-10-2018 YP_0400 2833bbfeabfba3538ea1e8e9752d4067 385 SUPERFAMILY SSF48600 5 91 2.01E-21 T 14-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YP_0400 2833bbfeabfba3538ea1e8e9752d4067 385 SUPERFAMILY SSF55021 279 376 1.01E-23 T 14-10-2018 YP_0400 2833bbfeabfba3538ea1e8e9752d4067 385 Pfam PF01817 Chorismate mutase type II 10 88 6.6E-16 T 14-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YP_0400 2833bbfeabfba3538ea1e8e9752d4067 385 Gene3D G3DSA:3.40.190.10 107 280 8.2E-56 T 14-10-2018 YP_0400 2833bbfeabfba3538ea1e8e9752d4067 385 SMART SM00830 10 90 6.1E-23 T 14-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YP_0400 2833bbfeabfba3538ea1e8e9752d4067 385 Pfam PF00800 Prephenate dehydratase 105 286 3.6E-61 T 14-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 YP_0400 2833bbfeabfba3538ea1e8e9752d4067 385 Gene3D G3DSA:1.20.59.10 1 106 2.3E-32 T 14-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YP_0400 2833bbfeabfba3538ea1e8e9752d4067 385 TIGRFAM TIGR01797 CM_P_1: chorismate mutase 6 88 9.2E-34 T 14-10-2018 IPR010952 Chorismate mutase, gammaproteobacteria GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 YP_0400 2833bbfeabfba3538ea1e8e9752d4067 385 Gene3D G3DSA:3.30.70.260 290 378 1.2E-23 T 14-10-2018 YP_0400 2833bbfeabfba3538ea1e8e9752d4067 385 Gene3D G3DSA:3.40.190.10 188 273 8.2E-56 T 14-10-2018 YP_0400 2833bbfeabfba3538ea1e8e9752d4067 385 PIRSF PIRSF001500 1 379 1.4E-141 T 14-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 YP_0400 2833bbfeabfba3538ea1e8e9752d4067 385 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 260 282 - T 14-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 YP_0400 2833bbfeabfba3538ea1e8e9752d4067 385 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 324 331 - T 14-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 YP_0993 132c6f5247fd05190a2192f0c69b3d28 490 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 14-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 YP_0993 132c6f5247fd05190a2192f0c69b3d28 490 Gene3D G3DSA:3.40.309.10 255 485 2.0E-81 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YP_0993 132c6f5247fd05190a2192f0c69b3d28 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 14-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 YP_0993 132c6f5247fd05190a2192f0c69b3d28 490 Hamap MF_00804 NAD/NADP-dependent betaine aldehyde dehydrogenase [betB]. 4 490 57.547 T 14-10-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 YP_0993 132c6f5247fd05190a2192f0c69b3d28 490 TIGRFAM TIGR01804 BADH: betaine-aldehyde dehydrogenase 10 477 4.3E-226 T 14-10-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 YP_0993 132c6f5247fd05190a2192f0c69b3d28 490 Gene3D G3DSA:3.40.605.10 3 254 4.3E-103 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YP_0993 132c6f5247fd05190a2192f0c69b3d28 490 Pfam PF00171 Aldehyde dehydrogenase family 16 479 2.1E-178 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YP_0993 132c6f5247fd05190a2192f0c69b3d28 490 SUPERFAMILY SSF53720 7 482 6.28E-172 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YP_0012 acd57a114b64833537549d97fc1c9a43 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_0012 acd57a114b64833537549d97fc1c9a43 402 Pfam PF00872 Transposase, Mutator family 12 377 2.4E-113 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_0233 eed5df6fad418a9d43e3b4c061d41cae 129 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 27.048 T 14-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0233 eed5df6fad418a9d43e3b4c061d41cae 129 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 3.9E-51 T 14-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0233 eed5df6fad418a9d43e3b4c061d41cae 129 Pfam PF01196 Ribosomal protein L17 20 116 9.9E-35 T 14-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0233 eed5df6fad418a9d43e3b4c061d41cae 129 Gene3D G3DSA:3.90.1030.10 1 117 2.6E-48 T 14-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0233 eed5df6fad418a9d43e3b4c061d41cae 129 SUPERFAMILY SSF64263 1 118 3.92E-51 T 14-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0233 eed5df6fad418a9d43e3b4c061d41cae 129 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 14-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0095 adf11d43f1c641ac0fa8f4e6857ef64f 282 Pfam PF00230 Major intrinsic protein 6 253 1.2E-71 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 YP_0095 adf11d43f1c641ac0fa8f4e6857ef64f 282 TIGRFAM TIGR00861 MIP: MIP family channel proteins 15 253 7.8E-73 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 YP_0095 adf11d43f1c641ac0fa8f4e6857ef64f 282 ProSitePatterns PS00221 MIP family signature. 68 76 - T 14-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 YP_0095 adf11d43f1c641ac0fa8f4e6857ef64f 282 PRINTS PR00783 Major intrinsic protein family signature 236 256 6.0E-52 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 YP_0095 adf11d43f1c641ac0fa8f4e6857ef64f 282 PRINTS PR00783 Major intrinsic protein family signature 87 106 6.0E-52 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 YP_0095 adf11d43f1c641ac0fa8f4e6857ef64f 282 PRINTS PR00783 Major intrinsic protein family signature 50 74 6.0E-52 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 YP_0095 adf11d43f1c641ac0fa8f4e6857ef64f 282 PRINTS PR00783 Major intrinsic protein family signature 153 171 6.0E-52 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 YP_0095 adf11d43f1c641ac0fa8f4e6857ef64f 282 PRINTS PR00783 Major intrinsic protein family signature 11 30 6.0E-52 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 YP_0095 adf11d43f1c641ac0fa8f4e6857ef64f 282 PRINTS PR00783 Major intrinsic protein family signature 186 208 6.0E-52 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 YP_0095 adf11d43f1c641ac0fa8f4e6857ef64f 282 Gene3D G3DSA:1.20.1080.10 3 261 6.5E-108 T 14-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 YP_0095 adf11d43f1c641ac0fa8f4e6857ef64f 282 SUPERFAMILY SSF81338 11 259 8.11E-80 T 14-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 YP_1472 9751792c2ef67ad730cc6715efce5009 270 Gene3D G3DSA:1.10.472.150 16 139 7.3E-42 T 14-10-2018 YP_1472 9751792c2ef67ad730cc6715efce5009 270 Gene3D G3DSA:3.40.390.10 140 262 8.9E-41 T 14-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 YP_1472 9751792c2ef67ad730cc6715efce5009 270 Pfam PF06167 Glucose-regulated metallo-peptidase M90 12 243 1.3E-63 T 14-10-2018 IPR010384 MtfA family YP_1472 9751792c2ef67ad730cc6715efce5009 270 Hamap MF_01593 Protein MtfA [mtfA]. 1 265 68.235 T 14-10-2018 IPR010384 MtfA family YP_1472 9751792c2ef67ad730cc6715efce5009 270 SUPERFAMILY SSF55486 34 245 1.54E-44 T 14-10-2018 YP_3260 53213a706738f4741a5ebc3923b04154 317 SUPERFAMILY SSF53850 88 291 1.13E-38 T 14-10-2018 YP_3260 53213a706738f4741a5ebc3923b04154 317 Gene3D G3DSA:1.10.10.10 1 89 9.9E-30 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3260 53213a706738f4741a5ebc3923b04154 317 Pfam PF03466 LysR substrate binding domain 87 288 2.6E-41 T 14-10-2018 IPR005119 LysR, substrate-binding YP_3260 53213a706738f4741a5ebc3923b04154 317 SUPERFAMILY SSF46785 1 109 6.53E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3260 53213a706738f4741a5ebc3923b04154 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.2E-15 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3260 53213a706738f4741a5ebc3923b04154 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.2E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3260 53213a706738f4741a5ebc3923b04154 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.2E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3260 53213a706738f4741a5ebc3923b04154 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.2E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3260 53213a706738f4741a5ebc3923b04154 317 Gene3D G3DSA:3.40.190.10 90 286 2.4E-71 T 14-10-2018 YP_3260 53213a706738f4741a5ebc3923b04154 317 Gene3D G3DSA:3.40.190.10 160 263 2.4E-71 T 14-10-2018 YP_0119 43db8edda69e661af5c26b3d5b5e09e0 294 Gene3D G3DSA:3.20.20.220 1 294 1.9E-117 T 14-10-2018 YP_0119 43db8edda69e661af5c26b3d5b5e09e0 294 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 25 290 1.0E-103 T 14-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 YP_0119 43db8edda69e661af5c26b3d5b5e09e0 294 Pfam PF02219 Methylenetetrahydrofolate reductase 17 291 8.0E-109 T 14-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 YP_0119 43db8edda69e661af5c26b3d5b5e09e0 294 SUPERFAMILY SSF51730 22 293 4.71E-96 T 14-10-2018 IPR029041 FAD-linked oxidoreductase-like YP_3236 5fa2954969d3fc66102013b5e1c896fc 222 Pfam PF00005 ABC transporter 18 165 8.0E-36 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3236 5fa2954969d3fc66102013b5e1c896fc 222 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3236 5fa2954969d3fc66102013b5e1c896fc 222 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 7.0E-94 T 14-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 YP_3236 5fa2954969d3fc66102013b5e1c896fc 222 SMART SM00382 27 214 2.7E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3236 5fa2954969d3fc66102013b5e1c896fc 222 SUPERFAMILY SSF52540 1 216 2.18E-65 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3236 5fa2954969d3fc66102013b5e1c896fc 222 Gene3D G3DSA:3.40.50.300 1 221 4.2E-62 T 14-10-2018 YP_1277 3524823285fc3b9a57a9d2a70fcdf0ea 216 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 188 4.1E-24 T 14-10-2018 YP_1277 3524823285fc3b9a57a9d2a70fcdf0ea 216 Gene3D G3DSA:1.20.1440.100 15 87 5.8E-64 T 14-10-2018 YP_1277 3524823285fc3b9a57a9d2a70fcdf0ea 216 Gene3D G3DSA:3.40.50.1000 3 213 5.8E-64 T 14-10-2018 IPR023214 HAD superfamily YP_1277 3524823285fc3b9a57a9d2a70fcdf0ea 216 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 188 2.7E-34 T 14-10-2018 YP_1277 3524823285fc3b9a57a9d2a70fcdf0ea 216 SUPERFAMILY SSF56784 1 206 9.39E-28 T 14-10-2018 IPR036412 HAD-like superfamily YP_1277 3524823285fc3b9a57a9d2a70fcdf0ea 216 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 198 2.3E-48 T 14-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like YP_3743 c28d935080bd0a97d962fd8cc42928a8 429 SUPERFAMILY SSF53649 23 429 9.76E-75 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YP_3743 c28d935080bd0a97d962fd8cc42928a8 429 PIRSF PIRSF001491 22 429 2.4E-167 T 14-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 YP_3743 c28d935080bd0a97d962fd8cc42928a8 429 Pfam PF01676 Metalloenzyme superfamily 24 420 1.8E-44 T 14-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 YP_3743 c28d935080bd0a97d962fd8cc42928a8 429 Gene3D G3DSA:3.40.720.10 25 428 3.5E-157 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YP_3743 c28d935080bd0a97d962fd8cc42928a8 429 Hamap MF_00740 Phosphopentomutase [deoB]. 23 429 56.323 T 14-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 YP_3743 c28d935080bd0a97d962fd8cc42928a8 429 SUPERFAMILY SSF143856 139 257 2.35E-50 T 14-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 YP_3743 c28d935080bd0a97d962fd8cc42928a8 429 Gene3D G3DSA:3.30.70.1250 137 260 3.5E-157 T 14-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 YP_3743 c28d935080bd0a97d962fd8cc42928a8 429 TIGRFAM TIGR01696 deoB: phosphopentomutase 25 426 4.9E-196 T 14-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 YP_2686 739d98939e8b97d53a213e92435bf7ab 157 Pfam PF00578 AhpC/TSA family 8 135 1.0E-39 T 14-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 YP_2686 739d98939e8b97d53a213e92435bf7ab 157 SUPERFAMILY SSF52833 4 155 4.29E-50 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_2686 739d98939e8b97d53a213e92435bf7ab 157 PIRSF PIRSF000239 2 146 2.4E-17 T 14-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 YP_2686 739d98939e8b97d53a213e92435bf7ab 157 Gene3D G3DSA:3.40.30.10 5 156 4.0E-48 T 14-10-2018 YP_3988 b9566ede6d7808ca9a5b1a58128036eb 338 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 17 331 1.1E-28 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 YP_3988 b9566ede6d7808ca9a5b1a58128036eb 338 Gene3D G3DSA:3.40.50.720 22 323 2.7E-108 T 14-10-2018 YP_3988 b9566ede6d7808ca9a5b1a58128036eb 338 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 160 188 - T 14-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YP_3988 b9566ede6d7808ca9a5b1a58128036eb 338 SUPERFAMILY SSF52283 13 145 7.75E-30 T 14-10-2018 YP_3988 b9566ede6d7808ca9a5b1a58128036eb 338 SUPERFAMILY SSF51735 112 300 6.48E-60 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3988 b9566ede6d7808ca9a5b1a58128036eb 338 Hamap MF_01667 Glyoxylate/hydroxypyruvate reductase B [ghrB]. 13 336 67.673 T 14-10-2018 IPR023756 Glyoxylate/hydroxypyruvate reductase B GO:0016618|GO:0030267|GO:0055114 KEGG: 00260+1.1.1.81|KEGG: 00620+1.1.1.79|KEGG: 00630+1.1.1.79+1.1.1.81|MetaCyc: PWY-1622 YP_3988 b9566ede6d7808ca9a5b1a58128036eb 338 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 238 254 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YP_3988 b9566ede6d7808ca9a5b1a58128036eb 338 Gene3D G3DSA:3.40.50.720 110 298 2.7E-108 T 14-10-2018 YP_3988 b9566ede6d7808ca9a5b1a58128036eb 338 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 120 299 1.1E-61 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 YP_1808 a43c81b49b466143331a631451a5cbab 295 PRINTS PR00996 Glutamate methyltransferase family signature 54 67 5.6E-45 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 YP_1808 a43c81b49b466143331a631451a5cbab 295 PRINTS PR00996 Glutamate methyltransferase family signature 160 176 5.6E-45 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 YP_1808 a43c81b49b466143331a631451a5cbab 295 PRINTS PR00996 Glutamate methyltransferase family signature 251 274 5.6E-45 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 YP_1808 a43c81b49b466143331a631451a5cbab 295 PRINTS PR00996 Glutamate methyltransferase family signature 93 105 5.6E-45 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 YP_1808 a43c81b49b466143331a631451a5cbab 295 PRINTS PR00996 Glutamate methyltransferase family signature 126 146 5.6E-45 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 YP_1808 a43c81b49b466143331a631451a5cbab 295 PRINTS PR00996 Glutamate methyltransferase family signature 232 246 5.6E-45 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 YP_1808 a43c81b49b466143331a631451a5cbab 295 Gene3D G3DSA:1.10.155.10 19 98 3.3E-32 T 14-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily YP_1808 a43c81b49b466143331a631451a5cbab 295 Pfam PF03705 CheR methyltransferase, all-alpha domain 34 85 1.9E-19 T 14-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal YP_1808 a43c81b49b466143331a631451a5cbab 295 SMART SM00138 32 292 4.6E-114 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 YP_1808 a43c81b49b466143331a631451a5cbab 295 PIRSF PIRSF000410 15 293 7.8E-99 T 14-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR YP_1808 a43c81b49b466143331a631451a5cbab 295 Pfam PF01739 CheR methyltransferase, SAM binding domain 100 287 2.9E-58 T 14-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal YP_1808 a43c81b49b466143331a631451a5cbab 295 SUPERFAMILY SSF53335 100 289 8.84E-59 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1808 a43c81b49b466143331a631451a5cbab 295 SUPERFAMILY SSF47757 23 99 6.02E-25 T 14-10-2018 YP_1808 a43c81b49b466143331a631451a5cbab 295 Gene3D G3DSA:3.40.50.150 99 292 6.3E-71 T 14-10-2018 YP_1460 778acd71c2fab750d083cc2cf94202a2 459 Pfam PF07690 Major Facilitator Superfamily 43 377 5.7E-29 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_1460 778acd71c2fab750d083cc2cf94202a2 459 ProSitePatterns PS00216 Sugar transport proteins signature 1. 92 108 - T 14-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 YP_1460 778acd71c2fab750d083cc2cf94202a2 459 Gene3D G3DSA:1.20.1250.20 35 451 1.7E-52 T 14-10-2018 YP_1460 778acd71c2fab750d083cc2cf94202a2 459 SUPERFAMILY SSF103473 26 451 5.1E-57 T 14-10-2018 IPR036259 MFS transporter superfamily YP_pCD39 ad46a23964c8dc350fba1b23ac7d6356 217 TIGRFAM TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family 10 211 9.7E-96 T 14-10-2018 IPR005773 Yop virulence translocation protein R GO:0015031|GO:0016021 YP_pCD39 ad46a23964c8dc350fba1b23ac7d6356 217 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 144 159 - T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_pCD39 ad46a23964c8dc350fba1b23ac7d6356 217 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 192 204 - T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_pCD39 ad46a23964c8dc350fba1b23ac7d6356 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 11 30 1.0E-71 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_pCD39 ad46a23964c8dc350fba1b23ac7d6356 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 144 164 1.0E-71 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_pCD39 ad46a23964c8dc350fba1b23ac7d6356 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 189 214 1.0E-71 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_pCD39 ad46a23964c8dc350fba1b23ac7d6356 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 30 50 1.0E-71 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_pCD39 ad46a23964c8dc350fba1b23ac7d6356 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 50 69 1.0E-71 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_pCD39 ad46a23964c8dc350fba1b23ac7d6356 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 165 186 1.0E-71 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_pCD39 ad46a23964c8dc350fba1b23ac7d6356 217 Pfam PF00813 FliP family 13 211 1.6E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_2091 c6dc960b8606619e2a74ada8d5abbf34 463 PIRSF PIRSF006060 1 461 3.6E-48 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_2091 c6dc960b8606619e2a74ada8d5abbf34 463 Pfam PF13520 Amino acid permease 5 417 4.0E-74 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_2091 c6dc960b8606619e2a74ada8d5abbf34 463 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 462 4.1E-169 T 14-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 YP_2091 c6dc960b8606619e2a74ada8d5abbf34 463 Gene3D G3DSA:1.20.1740.10 1 446 4.4E-56 T 14-10-2018 YP_3113 8938e3e805f49d50d98e34fe67ae0752 234 Gene3D G3DSA:3.40.50.790 68 159 9.7E-81 T 14-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich YP_3113 8938e3e805f49d50d98e34fe67ae0752 234 PIRSF PIRSF002155 1 227 5.9E-78 T 14-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_3113 8938e3e805f49d50d98e34fe67ae0752 234 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 43.367 T 14-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 YP_3113 8938e3e805f49d50d98e34fe67ae0752 234 Pfam PF00687 Ribosomal protein L1p/L10e family 30 219 1.5E-51 T 14-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein YP_3113 8938e3e805f49d50d98e34fe67ae0752 234 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 14-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_3113 8938e3e805f49d50d98e34fe67ae0752 234 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 227 6.5E-107 T 14-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 YP_3113 8938e3e805f49d50d98e34fe67ae0752 234 Gene3D G3DSA:3.30.190.20 25 222 9.7E-81 T 14-10-2018 YP_3113 8938e3e805f49d50d98e34fe67ae0752 234 SUPERFAMILY SSF56808 6 225 1.83E-82 T 14-10-2018 IPR023674 Ribosomal protein L1-like YP_1257 d0b95148753a095c12845a276dd612a0 376 Hamap MF_01012 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC [rlmC]. 1 375 81.238 T 14-10-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 YP_1257 d0b95148753a095c12845a276dd612a0 376 Gene3D G3DSA:3.40.50.150 14 368 1.4E-75 T 14-10-2018 YP_1257 d0b95148753a095c12845a276dd612a0 376 TIGRFAM TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB 2 373 5.3E-222 T 14-10-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 YP_1257 d0b95148753a095c12845a276dd612a0 376 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 3 367 4.6E-57 T 14-10-2018 YP_1257 d0b95148753a095c12845a276dd612a0 376 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 357 367 - T 14-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site YP_1257 d0b95148753a095c12845a276dd612a0 376 SUPERFAMILY SSF53335 3 372 2.45E-54 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1257 d0b95148753a095c12845a276dd612a0 376 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 208 372 1.0E-17 T 14-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 YP_1257 d0b95148753a095c12845a276dd612a0 376 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 307 338 - T 14-10-2018 IPR030390 RNA methyltransferase TrmA, active site YP_1257 d0b95148753a095c12845a276dd612a0 376 Gene3D G3DSA:3.40.1350.30 56 211 1.4E-75 T 14-10-2018 YP_3013 964efed094070f670a0eb21f4858fbcc 368 Gene3D G3DSA:2.60.40.1090 220 367 9.2E-25 T 14-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YP_3013 964efed094070f670a0eb21f4858fbcc 368 Pfam PF00419 Fimbrial protein 220 367 2.0E-11 T 14-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YP_3013 964efed094070f670a0eb21f4858fbcc 368 SUPERFAMILY SSF49401 223 367 1.49E-19 T 14-10-2018 IPR008966 Adhesion domain superfamily YP_2979 a264fbdf510f077e983dfc44e53e81cc 210 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 14 199 4.9E-78 T 14-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 YP_2979 a264fbdf510f077e983dfc44e53e81cc 210 Gene3D G3DSA:3.90.79.10 2 209 5.6E-66 T 14-10-2018 YP_2979 a264fbdf510f077e983dfc44e53e81cc 210 Pfam PF00293 NUDIX domain 59 179 5.4E-13 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YP_2979 a264fbdf510f077e983dfc44e53e81cc 210 ProSitePatterns PS00893 Nudix box signature. 97 118 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YP_2979 a264fbdf510f077e983dfc44e53e81cc 210 SUPERFAMILY SSF55811 9 205 2.03E-49 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YP_2214 d0a1162ac8bd49845a74ad5bc8fc2a32 98 Gene3D G3DSA:4.10.520.10 1 98 7.5E-38 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YP_2214 d0a1162ac8bd49845a74ad5bc8fc2a32 98 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 31.046 T 14-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 YP_2214 d0a1162ac8bd49845a74ad5bc8fc2a32 98 SUPERFAMILY SSF47729 3 92 2.21E-31 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YP_2214 d0a1162ac8bd49845a74ad5bc8fc2a32 98 Pfam PF00216 Bacterial DNA-binding protein 3 91 9.9E-31 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_2214 d0a1162ac8bd49845a74ad5bc8fc2a32 98 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 3.1E-17 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_2214 d0a1162ac8bd49845a74ad5bc8fc2a32 98 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 3.1E-17 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_2214 d0a1162ac8bd49845a74ad5bc8fc2a32 98 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 3.1E-17 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_2214 d0a1162ac8bd49845a74ad5bc8fc2a32 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 14-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 YP_2214 d0a1162ac8bd49845a74ad5bc8fc2a32 98 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 97 1.4E-53 T 14-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 YP_2214 d0a1162ac8bd49845a74ad5bc8fc2a32 98 SMART SM00411 3 92 2.2E-42 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_0895 507128757ccf687158a25b5660d6f79a 468 ProDom PD332323 CIRCULATION DNA PROTEIN TAIL/DNA PHAGE PROPHAGE VIRION FLUMU BACTERIOPHAGE MU-LIKE 21 120 2.0E-55 T 14-10-2018 IPR009826 DNA circulation, N-terminal YP_0895 507128757ccf687158a25b5660d6f79a 468 Pfam PF07157 DNA circularisation protein N-terminus 25 118 3.6E-33 T 14-10-2018 IPR009826 DNA circulation, N-terminal YP_2258 92fc272180de3d740530a42229f5cb97 344 SUPERFAMILY SSF53659 5 340 1.07E-102 T 14-10-2018 YP_2258 92fc272180de3d740530a42229f5cb97 344 Pfam PF02504 Fatty acid synthesis protein 5 331 2.9E-117 T 14-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 YP_2258 92fc272180de3d740530a42229f5cb97 344 PIRSF PIRSF002465 2 344 8.2E-125 T 14-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 YP_2258 92fc272180de3d740530a42229f5cb97 344 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 344 142.095 T 14-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 YP_2258 92fc272180de3d740530a42229f5cb97 344 Gene3D G3DSA:3.40.718.10 3 343 5.9E-123 T 14-10-2018 YP_2258 92fc272180de3d740530a42229f5cb97 344 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 342 5.8E-134 T 14-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 YP_2734 f80c954abbd635dff0753588883dc701 159 Gene3D G3DSA:2.30.110.20 2 159 6.7E-53 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_2734 f80c954abbd635dff0753588883dc701 159 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 157 6.5E-61 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_2734 f80c954abbd635dff0753588883dc701 159 Pfam PF05638 Type VI secretion system effector, Hcp 28 143 3.0E-24 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_2734 f80c954abbd635dff0753588883dc701 159 SUPERFAMILY SSF141452 5 158 4.45E-37 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_0439 8b0fc3ea256899ffe296a9f74c92803e 63 Pfam PF10636 Hemin uptake protein hemP 28 63 2.1E-17 T 14-10-2018 IPR019600 Hemin uptake protein HemP YP_0439 8b0fc3ea256899ffe296a9f74c92803e 63 Gene3D G3DSA:2.10.70.10 26 63 3.1E-18 T 14-10-2018 YP_1112 7d54c5b7bafb0ef0d6e4193314e98de8 400 SMART SM00936 289 380 6.0E-34 T 14-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_1112 7d54c5b7bafb0ef0d6e4193314e98de8 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 128 145 4.4E-17 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YP_1112 7d54c5b7bafb0ef0d6e4193314e98de8 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 69 80 4.4E-17 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YP_1112 7d54c5b7bafb0ef0d6e4193314e98de8 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 155 168 4.4E-17 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YP_1112 7d54c5b7bafb0ef0d6e4193314e98de8 400 Gene3D G3DSA:2.60.410.10 289 380 9.8E-28 T 14-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_1112 7d54c5b7bafb0ef0d6e4193314e98de8 400 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 36 269 4.1E-99 T 14-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 YP_1112 7d54c5b7bafb0ef0d6e4193314e98de8 400 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 289 380 8.2E-25 T 14-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_1112 7d54c5b7bafb0ef0d6e4193314e98de8 400 SUPERFAMILY SSF56601 10 289 5.64E-78 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YP_1112 7d54c5b7bafb0ef0d6e4193314e98de8 400 SUPERFAMILY SSF69189 289 382 2.94E-25 T 14-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_1112 7d54c5b7bafb0ef0d6e4193314e98de8 400 Gene3D G3DSA:3.40.710.10 27 288 1.4E-89 T 14-10-2018 YP_2347 d593b98a10bb2f0c9fd1bf7f3c149780 316 Gene3D G3DSA:3.40.50.720 15 309 9.5E-110 T 14-10-2018 YP_2347 d593b98a10bb2f0c9fd1bf7f3c149780 316 Gene3D G3DSA:3.40.50.720 103 286 9.5E-110 T 14-10-2018 YP_2347 d593b98a10bb2f0c9fd1bf7f3c149780 316 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 283 1.4E-48 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 YP_2347 d593b98a10bb2f0c9fd1bf7f3c149780 316 SUPERFAMILY SSF51735 103 284 3.76E-49 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2347 d593b98a10bb2f0c9fd1bf7f3c149780 316 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 8 314 6.9E-25 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 YP_2347 d593b98a10bb2f0c9fd1bf7f3c149780 316 SUPERFAMILY SSF52283 5 137 1.59E-30 T 14-10-2018 YP_1298 144f5d8e9c384622a3980269bc9c2707 362 Pfam PF13407 Periplasmic binding protein domain 41 303 8.2E-46 T 14-10-2018 IPR025997 Periplasmic binding protein YP_1298 144f5d8e9c384622a3980269bc9c2707 362 SUPERFAMILY SSF53822 38 345 4.07E-52 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_1298 144f5d8e9c384622a3980269bc9c2707 362 Gene3D G3DSA:3.40.50.2300 47 298 1.1E-51 T 14-10-2018 YP_1298 144f5d8e9c384622a3980269bc9c2707 362 Gene3D G3DSA:3.40.50.2300 137 284 1.1E-51 T 14-10-2018 YP_1898 2164bdcb790e8f418d71b55cee96ed28 251 Gene3D G3DSA:3.30.70.980 134 209 7.3E-58 T 14-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_1898 2164bdcb790e8f418d71b55cee96ed28 251 Pfam PF01709 Transcriptional regulator 9 240 8.1E-91 T 14-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_1898 2164bdcb790e8f418d71b55cee96ed28 251 SUPERFAMILY SSF75625 7 249 1.96E-94 T 14-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_1898 2164bdcb790e8f418d71b55cee96ed28 251 Gene3D G3DSA:1.10.10.200 3 85 2.2E-34 T 14-10-2018 IPR017856 Integrase-like, N-terminal YP_1898 2164bdcb790e8f418d71b55cee96ed28 251 Gene3D G3DSA:3.30.70.980 89 240 7.3E-58 T 14-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_1898 2164bdcb790e8f418d71b55cee96ed28 251 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 7 243 35.727 T 14-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_1898 2164bdcb790e8f418d71b55cee96ed28 251 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 5 241 5.5E-103 T 14-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_2255 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.6E-49 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2255 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.6E-49 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2255 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 1.6E-49 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2255 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.6E-49 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2255 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.6E-49 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2255 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 1.6E-49 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2255 1a3343fac073c996d9e0647deeb84e31 244 SUPERFAMILY SSF51735 4 243 2.04E-85 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2255 1a3343fac073c996d9e0647deeb84e31 244 Gene3D G3DSA:3.40.50.720 1 244 1.0E-85 T 14-10-2018 YP_2255 1a3343fac073c996d9e0647deeb84e31 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YP_2255 1a3343fac073c996d9e0647deeb84e31 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 1.0E-65 T 14-10-2018 YP_2255 1a3343fac073c996d9e0647deeb84e31 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 2.3E-5 T 14-10-2018 YP_2255 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 1.7E-15 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2255 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.7E-15 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2255 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 1.7E-15 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2255 1a3343fac073c996d9e0647deeb84e31 244 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 242 4.7E-100 T 14-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YP_2160 36ffde40e4aaaf2701b5fe41a53464bd 143 Hamap MF_01819 Transcriptional regulator SlyA [slyA]. 1 143 36.707 T 14-10-2018 IPR023071 Transcriptional regulator, SlyA YP_2160 36ffde40e4aaaf2701b5fe41a53464bd 143 Pfam PF01047 MarR family 29 87 5.1E-17 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YP_2160 36ffde40e4aaaf2701b5fe41a53464bd 143 SMART SM00347 22 123 3.9E-26 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YP_2160 36ffde40e4aaaf2701b5fe41a53464bd 143 ProSitePatterns PS01117 MarR-type HTH domain signature. 62 96 - T 14-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site YP_2160 36ffde40e4aaaf2701b5fe41a53464bd 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 47 63 8.5E-26 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YP_2160 36ffde40e4aaaf2701b5fe41a53464bd 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 79 8.5E-26 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YP_2160 36ffde40e4aaaf2701b5fe41a53464bd 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 99 8.5E-26 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YP_2160 36ffde40e4aaaf2701b5fe41a53464bd 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 113 133 8.5E-26 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YP_2160 36ffde40e4aaaf2701b5fe41a53464bd 143 Gene3D G3DSA:1.10.10.10 1 143 4.5E-37 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2160 36ffde40e4aaaf2701b5fe41a53464bd 143 SUPERFAMILY SSF46785 4 139 5.41E-32 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0313 814b77f9d970ab1e33127f401288e5ec 121 PIRSF PIRSF006113 2 121 5.2E-54 T 14-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 YP_0313 814b77f9d970ab1e33127f401288e5ec 121 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 8 120 1.2E-34 T 14-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 YP_0313 814b77f9d970ab1e33127f401288e5ec 121 SUPERFAMILY SSF55620 2 121 7.23E-41 T 14-10-2018 YP_0313 814b77f9d970ab1e33127f401288e5ec 121 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 7 98 1.3E-33 T 14-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 YP_0313 814b77f9d970ab1e33127f401288e5ec 121 Gene3D G3DSA:3.30.479.10 2 121 4.4E-50 T 14-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 YP_3613 a2442710fe1cfaf426cf1363ddc6565e 318 SUPERFAMILY SSF46785 18 126 3.56E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3613 a2442710fe1cfaf426cf1363ddc6565e 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 23 80 7.2E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3613 a2442710fe1cfaf426cf1363ddc6565e 318 SUPERFAMILY SSF53850 109 306 2.9E-19 T 14-10-2018 YP_3613 a2442710fe1cfaf426cf1363ddc6565e 318 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 21 309 2.1E-110 T 14-10-2018 IPR017685 HTH-type transcriptional regulator ArgP YP_3613 a2442710fe1cfaf426cf1363ddc6565e 318 Gene3D G3DSA:1.10.10.10 17 99 1.3E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3613 a2442710fe1cfaf426cf1363ddc6565e 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 58 69 1.1E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3613 a2442710fe1cfaf426cf1363ddc6565e 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 48 58 1.1E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3613 a2442710fe1cfaf426cf1363ddc6565e 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 48 1.1E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3613 a2442710fe1cfaf426cf1363ddc6565e 318 Pfam PF03466 LysR substrate binding domain 109 303 4.0E-13 T 14-10-2018 IPR005119 LysR, substrate-binding YP_3613 a2442710fe1cfaf426cf1363ddc6565e 318 Hamap MF_00513 HTH-type transcriptional regulator ArgP [argP]. 17 312 57.444 T 14-10-2018 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria YP_3613 a2442710fe1cfaf426cf1363ddc6565e 318 Gene3D G3DSA:3.40.190.290 105 310 2.4E-63 T 14-10-2018 YP_0355 3f1badd59658d6faf4eb2fba264c0aa6 345 Pfam PF02653 Branched-chain amino acid transport system / permease component 42 316 4.2E-23 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_1098 a23d13698fb21c51a28fe0db7ba3f12d 305 Gene3D G3DSA:3.40.190.10 34 279 7.6E-100 T 14-10-2018 YP_1098 a23d13698fb21c51a28fe0db7ba3f12d 305 SMART SM00062 44 276 6.0E-63 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_1098 a23d13698fb21c51a28fe0db7ba3f12d 305 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 45 274 2.8E-46 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_1098 a23d13698fb21c51a28fe0db7ba3f12d 305 Gene3D G3DSA:3.40.190.10 138 233 7.6E-100 T 14-10-2018 YP_1098 a23d13698fb21c51a28fe0db7ba3f12d 305 SUPERFAMILY SSF53850 3 277 6.73E-62 T 14-10-2018 YP_1435 83aa18e67f920eb4232b0a0f46738e82 355 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 226 239 - T 14-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 YP_1435 83aa18e67f920eb4232b0a0f46738e82 355 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 319 331 - T 14-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 YP_1435 83aa18e67f920eb4232b0a0f46738e82 355 Gene3D G3DSA:3.30.230.40 255 355 1.7E-35 T 14-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 YP_1435 83aa18e67f920eb4232b0a0f46738e82 355 SUPERFAMILY SSF54211 252 342 2.28E-31 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_1435 83aa18e67f920eb4232b0a0f46738e82 355 SUPERFAMILY SSF54211 167 251 5.31E-30 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_1435 83aa18e67f920eb4232b0a0f46738e82 355 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 5 144 3.5E-44 T 14-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 YP_1435 83aa18e67f920eb4232b0a0f46738e82 355 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 3 162 9.5E-77 T 14-10-2018 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15 YP_1435 83aa18e67f920eb4232b0a0f46738e82 355 Gene3D G3DSA:3.40.50.1000 1 162 3.2E-43 T 14-10-2018 IPR023214 HAD superfamily YP_1435 83aa18e67f920eb4232b0a0f46738e82 355 Gene3D G3DSA:3.30.230.40 163 254 4.6E-34 T 14-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 YP_1435 83aa18e67f920eb4232b0a0f46738e82 355 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 167 355 36.127 T 14-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 YP_1435 83aa18e67f920eb4232b0a0f46738e82 355 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 2 355 50.751 T 14-10-2018 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15 YP_1435 83aa18e67f920eb4232b0a0f46738e82 355 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 148 2.4E-24 T 14-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 YP_1435 83aa18e67f920eb4232b0a0f46738e82 355 SUPERFAMILY SSF56784 1 157 6.89E-37 T 14-10-2018 IPR036412 HAD-like superfamily YP_1435 83aa18e67f920eb4232b0a0f46738e82 355 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 196 337 1.1E-63 T 14-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 YP_1435 83aa18e67f920eb4232b0a0f46738e82 355 Pfam PF13242 HAD-hyrolase-like 103 146 2.9E-5 T 14-10-2018 YP_3591 f98e4a7d175d786ea793f409e6d1220f 472 SUPERFAMILY SSF55874 311 472 5.24E-36 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3591 f98e4a7d175d786ea793f409e6d1220f 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 452 2.2E-8 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_3591 f98e4a7d175d786ea793f409e6d1220f 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 429 2.2E-8 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_3591 f98e4a7d175d786ea793f409e6d1220f 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 458 471 2.2E-8 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_3591 f98e4a7d175d786ea793f409e6d1220f 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 415 2.2E-8 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_3591 f98e4a7d175d786ea793f409e6d1220f 472 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 365 472 3.3E-17 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_3591 f98e4a7d175d786ea793f409e6d1220f 472 SMART SM00387 364 472 5.5E-25 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_3591 f98e4a7d175d786ea793f409e6d1220f 472 SMART SM00388 255 320 2.5E-13 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_3591 f98e4a7d175d786ea793f409e6d1220f 472 SUPERFAMILY SSF103190 56 170 1.1E-12 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily YP_3591 f98e4a7d175d786ea793f409e6d1220f 472 Pfam PF14827 Double sensory domain of two-component sensor kinase 55 168 9.8E-7 T 14-10-2018 IPR029150 Double Cache domain 3 YP_3591 f98e4a7d175d786ea793f409e6d1220f 472 SUPERFAMILY SSF47384 254 319 1.22E-12 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_3591 f98e4a7d175d786ea793f409e6d1220f 472 Gene3D G3DSA:3.30.565.10 324 472 1.0E-32 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3591 f98e4a7d175d786ea793f409e6d1220f 472 Gene3D G3DSA:1.10.287.130 204 316 5.2E-13 T 14-10-2018 YP_3591 f98e4a7d175d786ea793f409e6d1220f 472 Pfam PF00512 His Kinase A (phospho-acceptor) domain 258 319 9.8E-13 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0875 dfa32c2a6fcbac2caca02b42d207916e 208 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 40 208 6.0E-93 T 14-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YP_0875 dfa32c2a6fcbac2caca02b42d207916e 208 SUPERFAMILY SSF54637 39 205 9.94E-56 T 14-10-2018 IPR029069 HotDog domain superfamily YP_0875 dfa32c2a6fcbac2caca02b42d207916e 208 Gene3D G3DSA:3.10.129.10 34 208 1.1E-64 T 14-10-2018 YP_0875 dfa32c2a6fcbac2caca02b42d207916e 208 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 38 208 51.068 T 14-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YP_0875 dfa32c2a6fcbac2caca02b42d207916e 208 Pfam PF07977 FabA-like domain 65 194 2.8E-52 T 14-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YP_0737 384323a82ef4ea13f5ec605410948793 200 SUPERFAMILY SSF52833 1 194 3.69E-65 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_0737 384323a82ef4ea13f5ec605410948793 200 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 194 6.4E-11 T 14-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 YP_0737 384323a82ef4ea13f5ec605410948793 200 Gene3D G3DSA:3.40.30.10 1 197 3.7E-72 T 14-10-2018 YP_0737 384323a82ef4ea13f5ec605410948793 200 PIRSF PIRSF000239 1 199 7.2E-58 T 14-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 YP_0737 384323a82ef4ea13f5ec605410948793 200 Pfam PF00578 AhpC/TSA family 5 139 1.8E-35 T 14-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 YP_1055 008d21f690a83164cbc9562b8597b54f 164 Hamap MF_00023 SsrA-binding protein [smpB]. 1 164 71.661 T 14-10-2018 IPR000037 SsrA-binding protein GO:0003723 YP_1055 008d21f690a83164cbc9562b8597b54f 164 Pfam PF01668 SmpB protein 18 161 6.9E-58 T 14-10-2018 IPR000037 SsrA-binding protein GO:0003723 YP_1055 008d21f690a83164cbc9562b8597b54f 164 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 18 126 2.0E-60 T 14-10-2018 IPR000037 SsrA-binding protein GO:0003723 YP_1055 008d21f690a83164cbc9562b8597b54f 164 ProSitePatterns PS01317 SsrA-binding protein. 36 48 - T 14-10-2018 IPR020081 SsrA-binding protein, conserved site YP_1055 008d21f690a83164cbc9562b8597b54f 164 Gene3D G3DSA:2.40.280.10 11 138 9.4E-48 T 14-10-2018 IPR023620 Small protein B YP_1055 008d21f690a83164cbc9562b8597b54f 164 TIGRFAM TIGR00086 smpB: SsrA-binding protein 18 160 2.5E-54 T 14-10-2018 IPR000037 SsrA-binding protein GO:0003723 YP_1055 008d21f690a83164cbc9562b8597b54f 164 SUPERFAMILY SSF74982 12 142 1.96E-51 T 14-10-2018 IPR023620 Small protein B YP_3780 00242f91f0f0129dc64f8fc10a76a251 291 Gene3D G3DSA:1.10.10.60 176 232 6.7E-13 T 14-10-2018 YP_3780 00242f91f0f0129dc64f8fc10a76a251 291 Gene3D G3DSA:1.10.10.2730 233 279 3.6E-16 T 14-10-2018 YP_3780 00242f91f0f0129dc64f8fc10a76a251 291 SUPERFAMILY SSF46689 181 224 4.3E-5 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3780 00242f91f0f0129dc64f8fc10a76a251 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 247 262 7.9E-6 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_3780 00242f91f0f0129dc64f8fc10a76a251 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 262 278 7.9E-6 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_3780 00242f91f0f0129dc64f8fc10a76a251 291 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 232 274 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YP_3780 00242f91f0f0129dc64f8fc10a76a251 291 SMART SM00342 195 278 2.6E-26 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_3780 00242f91f0f0129dc64f8fc10a76a251 291 SUPERFAMILY SSF46689 232 284 1.97E-12 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3780 00242f91f0f0129dc64f8fc10a76a251 291 Pfam PF12833 Helix-turn-helix domain 202 280 1.5E-16 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_2395 6c9f1a213d59ca75f592368c7fe202f1 460 Pfam PF08245 Mur ligase middle domain 80 222 7.8E-9 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 YP_2395 6c9f1a213d59ca75f592368c7fe202f1 460 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 170 185 - T 14-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 YP_2395 6c9f1a213d59ca75f592368c7fe202f1 460 SUPERFAMILY SSF53244 324 457 2.44E-33 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YP_2395 6c9f1a213d59ca75f592368c7fe202f1 460 Gene3D G3DSA:3.90.190.20 326 460 6.2E-39 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YP_2395 6c9f1a213d59ca75f592368c7fe202f1 460 Pfam PF02875 Mur ligase family, glutamate ligase domain 325 383 1.6E-6 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 YP_2395 6c9f1a213d59ca75f592368c7fe202f1 460 TIGRFAM TIGR01499 folC: bifunctional protein FolC 58 456 1.8E-103 T 14-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 YP_2395 6c9f1a213d59ca75f592368c7fe202f1 460 Gene3D G3DSA:3.40.1190.10 25 325 4.6E-103 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YP_2395 6c9f1a213d59ca75f592368c7fe202f1 460 PIRSF PIRSF001563 31 460 4.4E-110 T 14-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 YP_2395 6c9f1a213d59ca75f592368c7fe202f1 460 SUPERFAMILY SSF53623 39 322 4.21E-85 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YP_3139 5ed5bd1ea096bc160de6a2bfa307f02a 299 Hamap MF_00258 Glutamate racemase [murI]. 38 290 33.898 T 14-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YP_3139 5ed5bd1ea096bc160de6a2bfa307f02a 299 Pfam PF01177 Asp/Glu/Hydantoin racemase 43 251 6.1E-25 T 14-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YP_3139 5ed5bd1ea096bc160de6a2bfa307f02a 299 SUPERFAMILY SSF53681 41 141 5.1E-31 T 14-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YP_3139 5ed5bd1ea096bc160de6a2bfa307f02a 299 SUPERFAMILY SSF53681 143 295 4.58E-32 T 14-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YP_3139 5ed5bd1ea096bc160de6a2bfa307f02a 299 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 105 113 - T 14-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YP_3139 5ed5bd1ea096bc160de6a2bfa307f02a 299 Gene3D G3DSA:3.40.50.1860 130 243 2.1E-90 T 14-10-2018 YP_3139 5ed5bd1ea096bc160de6a2bfa307f02a 299 TIGRFAM TIGR00067 glut_race: glutamate racemase 41 286 2.7E-84 T 14-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YP_3139 5ed5bd1ea096bc160de6a2bfa307f02a 299 Gene3D G3DSA:3.40.50.1860 42 277 2.1E-90 T 14-10-2018 YP_3139 5ed5bd1ea096bc160de6a2bfa307f02a 299 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 216 226 - T 14-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YP_2381 12e4eff9b6fe0e7a3e7602564fb68ebe 95 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 85 3.8E-12 T 14-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 YP_2381 12e4eff9b6fe0e7a3e7602564fb68ebe 95 Gene3D G3DSA:3.40.50.2300 1 90 1.1E-19 T 14-10-2018 YP_2381 12e4eff9b6fe0e7a3e7602564fb68ebe 95 SUPERFAMILY SSF52794 1 89 7.06E-20 T 14-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 15 64 1.8E-14 T 14-10-2018 IPR004176 Clp, N-terminal YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 654 734 2.8E-24 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 Pfam PF07724 AAA domain (Cdc48 subfamily) 488 648 1.7E-48 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 Gene3D G3DSA:1.10.8.60 654 759 8.5E-36 T 14-10-2018 YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 563 581 1.2E-36 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 534 552 1.2E-36 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 492 510 1.2E-36 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 596 610 1.2E-36 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 Gene3D G3DSA:1.10.1780.10 3 145 7.4E-45 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 SUPERFAMILY SSF81923 3 143 3.92E-58 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 SMART SM00382 488 655 3.9E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 SMART SM00382 207 353 4.2E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 SUPERFAMILY SSF52540 170 428 8.72E-67 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 303 315 - T 14-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 5 735 0.0 T 14-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 SMART SM01086 654 745 9.2E-34 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 212 344 1.1E-12 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 Gene3D G3DSA:1.10.8.60 353 439 1.8E-35 T 14-10-2018 YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 SUPERFAMILY SSF52540 438 749 8.43E-78 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 Gene3D G3DSA:3.40.50.300 440 653 3.5E-78 T 14-10-2018 YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 519 537 - T 14-10-2018 IPR028299 ClpA/B, conserved site 2 YP_1225 46789d7f3e6aed8c5ec976a634e443a8 760 Gene3D G3DSA:3.40.50.300 157 351 3.2E-63 T 14-10-2018 YP_0459 1e80181677fd9decbce2445310dfa127 792 Pfam PF00577 Outer membrane usher protein 177 704 1.8E-65 T 14-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YP_0459 1e80181677fd9decbce2445310dfa127 792 Gene3D G3DSA:2.60.40.2070 714 784 6.4E-6 T 14-10-2018 YP_0459 1e80181677fd9decbce2445310dfa127 792 Gene3D G3DSA:2.60.40.3110 257 319 1.1E-20 T 14-10-2018 YP_0459 1e80181677fd9decbce2445310dfa127 792 Pfam PF13954 PapC N-terminal domain 33 159 9.5E-14 T 14-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 YP_0459 1e80181677fd9decbce2445310dfa127 792 SUPERFAMILY SSF141729 30 139 2.09E-15 T 14-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 YP_0459 1e80181677fd9decbce2445310dfa127 792 Pfam PF13953 PapC C-terminal domain 713 776 5.2E-12 T 14-10-2018 IPR025949 PapC-like, C-terminal domain YP_0459 1e80181677fd9decbce2445310dfa127 792 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 284 294 - T 14-10-2018 IPR018030 Fimbrial membrane usher, conserved site YP_0459 1e80181677fd9decbce2445310dfa127 792 Gene3D G3DSA:3.10.20.410 30 140 5.2E-5 T 14-10-2018 YP_0459 1e80181677fd9decbce2445310dfa127 792 Gene3D G3DSA:2.60.40.2610 620 708 1.4E-14 T 14-10-2018 YP_1825 1a21f5f906d80dd6168f4a43831f74e6 190 Gene3D G3DSA:2.60.120.10 14 114 1.1E-36 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_1825 1a21f5f906d80dd6168f4a43831f74e6 190 Gene3D G3DSA:2.60.120.10 115 157 1.1E-36 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_1825 1a21f5f906d80dd6168f4a43831f74e6 190 Pfam PF05962 HutD 14 167 1.3E-50 T 14-10-2018 IPR010282 Uncharacterised protein family HutD/Ves YP_1825 1a21f5f906d80dd6168f4a43831f74e6 190 SUPERFAMILY SSF51182 1 187 2.67E-53 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily YP_2400 3a4dfa9a5ccfeb572f8842254d753c69 395 Gene3D G3DSA:3.40.50.720 112 277 1.3E-112 T 14-10-2018 YP_2400 3a4dfa9a5ccfeb572f8842254d753c69 395 Gene3D G3DSA:3.30.1370.170 313 394 7.2E-32 T 14-10-2018 IPR038251 PdxB, dimerisation domain superfamily KEGG: 00750+1.1.1.290 YP_2400 3a4dfa9a5ccfeb572f8842254d753c69 395 SUPERFAMILY SSF51735 111 277 4.38E-34 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2400 3a4dfa9a5ccfeb572f8842254d753c69 395 SUPERFAMILY SSF52283 19 149 5.53E-17 T 14-10-2018 YP_2400 3a4dfa9a5ccfeb572f8842254d753c69 395 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 21 377 46.78 T 14-10-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00750+1.1.1.290 YP_2400 3a4dfa9a5ccfeb572f8842254d753c69 395 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 27 298 3.0E-15 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 YP_2400 3a4dfa9a5ccfeb572f8842254d753c69 395 Pfam PF11890 Domain of unknown function (DUF3410) 309 389 5.7E-29 T 14-10-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00750+1.1.1.290 YP_2400 3a4dfa9a5ccfeb572f8842254d753c69 395 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 217 233 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YP_2400 3a4dfa9a5ccfeb572f8842254d753c69 395 Gene3D G3DSA:3.40.50.720 23 297 1.3E-112 T 14-10-2018 YP_2400 3a4dfa9a5ccfeb572f8842254d753c69 395 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 139 166 - T 14-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YP_2400 3a4dfa9a5ccfeb572f8842254d753c69 395 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 128 276 1.4E-31 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 YP_3351 30d5c4be4480ffd382703b236864aff1 281 SMART SM00052 26 271 1.6E-11 T 14-10-2018 IPR001633 EAL domain YP_3351 30d5c4be4480ffd382703b236864aff1 281 Gene3D G3DSA:3.20.20.450 44 276 1.5E-34 T 14-10-2018 IPR035919 EAL domain superfamily YP_3351 30d5c4be4480ffd382703b236864aff1 281 SUPERFAMILY SSF141868 49 274 9.55E-29 T 14-10-2018 IPR035919 EAL domain superfamily YP_3351 30d5c4be4480ffd382703b236864aff1 281 Pfam PF00563 EAL domain 50 266 6.4E-27 T 14-10-2018 IPR001633 EAL domain YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 Gene3D G3DSA:1.20.1640.10 513 1021 0.0 T 14-10-2018 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 Gene3D G3DSA:1.20.1640.10 9 512 0.0 T 14-10-2018 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 Gene3D G3DSA:3.30.70.1430 39 817 0.0 T 14-10-2018 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 Gene3D G3DSA:3.30.70.1320 134 333 0.0 T 14-10-2018 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 SUPERFAMILY SSF82693 136 331 3.14E-25 T 14-10-2018 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 Gene3D G3DSA:3.30.2090.10 721 809 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 SUPERFAMILY SSF82714 183 273 2.22E-22 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 SUPERFAMILY SSF82866 833 1025 7.06E-38 T 14-10-2018 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 Pfam PF00873 AcrB/AcrD/AcrF family 2 1025 0.0 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 1.2E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 337 360 1.2E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 1.2E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 621 635 1.2E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 364 385 1.2E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 446 469 1.2E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 1.2E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 392 416 1.2E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 1.2E-108 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 SUPERFAMILY SSF82693 565 671 1.52E-29 T 14-10-2018 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 Gene3D G3DSA:3.30.70.1440 669 864 0.0 T 14-10-2018 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 SUPERFAMILY SSF82866 297 498 3.92E-51 T 14-10-2018 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 SUPERFAMILY SSF82693 39 132 7.85E-25 T 14-10-2018 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 Gene3D G3DSA:3.30.2090.10 180 276 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1036 0.0 T 14-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 SUPERFAMILY SSF82714 722 808 3.14E-21 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 SUPERFAMILY SSF82693 672 855 5.41E-23 T 14-10-2018 YP_0601 b52984bb1c3de9ff4c6f243b9d6cc44c 1041 Gene3D G3DSA:3.30.70.1430 567 668 0.0 T 14-10-2018 YP_3767 b7b61277ca3754665e0fdc6282f7dab6 306 Gene3D G3DSA:1.10.10.10 1 51 1.6E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3767 b7b61277ca3754665e0fdc6282f7dab6 306 Gene3D G3DSA:3.40.50.1360 57 304 8.5E-84 T 14-10-2018 YP_3767 b7b61277ca3754665e0fdc6282f7dab6 306 Pfam PF04198 Putative sugar-binding domain 55 304 2.0E-68 T 14-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 YP_3767 b7b61277ca3754665e0fdc6282f7dab6 306 SUPERFAMILY SSF100950 55 305 1.3E-58 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_0782 43c0a970713d6d6585e786c2a2d00031 567 Pfam PF12793 Sugar transport-related sRNA regulator N-term 6 118 1.7E-39 T 14-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YP_0782 43c0a970713d6d6585e786c2a2d00031 567 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 166 348 5.3E-17 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain YP_0782 43c0a970713d6d6585e786c2a2d00031 567 SUPERFAMILY SSF53850 122 562 1.1E-50 T 14-10-2018 YP_0782 43c0a970713d6d6585e786c2a2d00031 567 Gene3D G3DSA:3.40.190.10 116 311 1.3E-25 T 14-10-2018 YP_pCD87 cadd1dfa329e671d6bc3ef84472352d9 141 SUPERFAMILY SSF69635 3 118 8.16E-30 T 14-10-2018 YP_pCD87 cadd1dfa329e671d6bc3ef84472352d9 141 Pfam PF05932 Tir chaperone protein (CesT) family 7 119 5.7E-25 T 14-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 YP_pCD87 cadd1dfa329e671d6bc3ef84472352d9 141 Gene3D G3DSA:3.30.1460.10 1 141 4.5E-54 T 14-10-2018 YP_3662 cab1837e6bcef9dbff1316c46b3e7ed0 968 SUPERFAMILY SSF52540 125 377 2.84E-39 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3662 cab1837e6bcef9dbff1316c46b3e7ed0 968 SMART SM00490 517 601 4.9E-15 T 14-10-2018 IPR001650 Helicase, C-terminal YP_3662 cab1837e6bcef9dbff1316c46b3e7ed0 968 Pfam PF00271 Helicase conserved C-terminal domain 492 601 3.1E-14 T 14-10-2018 IPR001650 Helicase, C-terminal YP_3662 cab1837e6bcef9dbff1316c46b3e7ed0 968 Gene3D G3DSA:2.30.30.930 55 114 3.3E-28 T 14-10-2018 YP_3662 cab1837e6bcef9dbff1316c46b3e7ed0 968 Pfam PF12137 RNA polymerase recycling family C-terminal 605 965 8.4E-156 T 14-10-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 YP_3662 cab1837e6bcef9dbff1316c46b3e7ed0 968 Gene3D G3DSA:3.30.360.80 713 786 9.0E-32 T 14-10-2018 YP_3662 cab1837e6bcef9dbff1316c46b3e7ed0 968 SUPERFAMILY SSF52540 273 644 3.35E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3662 cab1837e6bcef9dbff1316c46b3e7ed0 968 Pfam PF00176 SNF2 family N-terminal domain 174 441 4.5E-19 T 14-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 YP_3662 cab1837e6bcef9dbff1316c46b3e7ed0 968 Gene3D G3DSA:2.30.30.140 1 53 3.4E-23 T 14-10-2018 YP_3662 cab1837e6bcef9dbff1316c46b3e7ed0 968 SMART SM00487 150 342 9.0E-22 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_3662 cab1837e6bcef9dbff1316c46b3e7ed0 968 Gene3D G3DSA:3.40.50.300 429 633 2.4E-47 T 14-10-2018 YP_3662 cab1837e6bcef9dbff1316c46b3e7ed0 968 Gene3D G3DSA:3.40.50.10810 150 428 3.9E-109 T 14-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily YP_3662 cab1837e6bcef9dbff1316c46b3e7ed0 968 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 1 966 28.954 T 14-10-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 YP_3391 bae53f3ae2cf9ef080371249c45891c5 120 SMART SM00530 63 118 1.6E-4 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_3391 bae53f3ae2cf9ef080371249c45891c5 120 Gene3D G3DSA:1.10.260.40 64 119 6.4E-11 T 14-10-2018 YP_3391 bae53f3ae2cf9ef080371249c45891c5 120 SUPERFAMILY SSF47413 63 115 8.16E-10 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_3391 bae53f3ae2cf9ef080371249c45891c5 120 Pfam PF01381 Helix-turn-helix 65 114 3.7E-7 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_0109 0d8dc5858c24909590bd7da36987bcda 281 SUPERFAMILY SSF110997 207 276 4.05E-22 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 YP_0109 0d8dc5858c24909590bd7da36987bcda 281 Pfam PF05036 Sporulation related domain 207 275 2.1E-19 T 14-10-2018 IPR007730 Sporulation-like domain GO:0042834 YP_0109 0d8dc5858c24909590bd7da36987bcda 281 Gene3D G3DSA:3.30.70.1070 202 281 1.7E-31 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 YP_0109 0d8dc5858c24909590bd7da36987bcda 281 Hamap MF_02039 Cell division protein FtsN [ftsN]. 33 281 34.919 T 14-10-2018 IPR011930 Cell division protein FtsN GO:0005515 YP_0109 0d8dc5858c24909590bd7da36987bcda 281 TIGRFAM TIGR02223 ftsN: cell division protein FtsN 2 275 1.7E-73 T 14-10-2018 IPR011930 Cell division protein FtsN GO:0005515 YP_pCD26 f1922620cf2047e1fc8f8f9a6d052d4f 165 Pfam PF09025 YopR, type III needle-polymerisation regulator 30 164 1.1E-60 T 14-10-2018 IPR013349 Type III secretion system effector YopR GO:0009405|GO:0030254|GO:0030257 YP_pCD26 f1922620cf2047e1fc8f8f9a6d052d4f 165 TIGRFAM TIGR02509 type_III_yopR: type III secretion effector, YopR family 34 163 1.3E-55 T 14-10-2018 IPR013349 Type III secretion system effector YopR GO:0009405|GO:0030254|GO:0030257 YP_pCD26 f1922620cf2047e1fc8f8f9a6d052d4f 165 SUPERFAMILY SSF140591 43 145 3.92E-39 T 14-10-2018 YP_pCD26 f1922620cf2047e1fc8f8f9a6d052d4f 165 Gene3D G3DSA:1.10.10.1000 38 149 2.6E-59 T 14-10-2018 YP_0154 641701b6900493686a5790cade6a71a4 362 Gene3D G3DSA:1.20.1090.10 173 361 1.4E-64 T 14-10-2018 YP_0154 641701b6900493686a5790cade6a71a4 362 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 361 74.061 T 14-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 YP_0154 641701b6900493686a5790cade6a71a4 362 SUPERFAMILY SSF56796 4 357 1.7E-115 T 14-10-2018 YP_0154 641701b6900493686a5790cade6a71a4 362 Pfam PF01761 3-dehydroquinate synthase 67 326 1.2E-108 T 14-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 YP_0154 641701b6900493686a5790cade6a71a4 362 PIRSF PIRSF001455 11 359 4.1E-105 T 14-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 YP_0154 641701b6900493686a5790cade6a71a4 362 Gene3D G3DSA:3.40.50.1970 1 172 3.2E-64 T 14-10-2018 YP_0154 641701b6900493686a5790cade6a71a4 362 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 355 2.0E-119 T 14-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 YP_1178 a7c1b6562f4a670e133f80821d34483d 336 PIRSF PIRSF000164 13 336 4.8E-96 T 14-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 YP_1178 a7c1b6562f4a670e133f80821d34483d 336 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 14-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 YP_1178 a7c1b6562f4a670e133f80821d34483d 336 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 14-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 YP_1178 a7c1b6562f4a670e133f80821d34483d 336 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 336 5.5E-159 T 14-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 YP_1178 a7c1b6562f4a670e133f80821d34483d 336 Pfam PF01180 Dihydroorotate dehydrogenase 47 335 4.7E-92 T 14-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 YP_1178 a7c1b6562f4a670e133f80821d34483d 336 SUPERFAMILY SSF51395 1 334 3.19E-106 T 14-10-2018 YP_1178 a7c1b6562f4a670e133f80821d34483d 336 Gene3D G3DSA:3.20.20.70 1 336 8.7E-146 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_1178 a7c1b6562f4a670e133f80821d34483d 336 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 336 51.453 T 14-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 YP_0011 477c35b97dc77d15cc30cfd369500f69 229 Gene3D G3DSA:1.20.120.530 102 229 4.4E-23 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_0011 477c35b97dc77d15cc30cfd369500f69 229 SUPERFAMILY SSF48008 107 223 6.28E-22 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_0011 477c35b97dc77d15cc30cfd369500f69 229 SMART SM00345 18 77 9.3E-19 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_0011 477c35b97dc77d15cc30cfd369500f69 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 77 4.1E-18 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_0011 477c35b97dc77d15cc30cfd369500f69 229 SMART SM00895 106 227 5.0E-17 T 14-10-2018 IPR011711 GntR, C-terminal YP_0011 477c35b97dc77d15cc30cfd369500f69 229 Gene3D G3DSA:1.10.10.10 1 79 3.9E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0011 477c35b97dc77d15cc30cfd369500f69 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 1.6E-9 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_0011 477c35b97dc77d15cc30cfd369500f69 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 1.6E-9 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_0011 477c35b97dc77d15cc30cfd369500f69 229 Pfam PF07729 FCD domain 110 222 1.0E-21 T 14-10-2018 IPR011711 GntR, C-terminal YP_0011 477c35b97dc77d15cc30cfd369500f69 229 SUPERFAMILY SSF46785 10 81 1.25E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3080 186702487aa1a75b3b704d8ee25a7837 548 Pfam PF00342 Phosphoglucose isomerase 52 541 6.2E-257 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3080 186702487aa1a75b3b704d8ee25a7837 548 Gene3D G3DSA:1.10.1390.10 511 548 2.8E-20 T 14-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3080 186702487aa1a75b3b704d8ee25a7837 548 Gene3D G3DSA:3.40.50.10490 11 510 1.9E-240 T 14-10-2018 YP_3080 186702487aa1a75b3b704d8ee25a7837 548 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 46 524 42.779 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3080 186702487aa1a75b3b704d8ee25a7837 548 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 497 514 - T 14-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3080 186702487aa1a75b3b704d8ee25a7837 548 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 265 278 - T 14-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3080 186702487aa1a75b3b704d8ee25a7837 548 SUPERFAMILY SSF53697 5 547 1.33E-226 T 14-10-2018 YP_3080 186702487aa1a75b3b704d8ee25a7837 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 465 483 3.6E-55 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3080 186702487aa1a75b3b704d8ee25a7837 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 150 169 3.6E-55 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3080 186702487aa1a75b3b704d8ee25a7837 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 261 279 3.6E-55 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3080 186702487aa1a75b3b704d8ee25a7837 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 483 497 3.6E-55 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3080 186702487aa1a75b3b704d8ee25a7837 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 338 359 3.6E-55 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3080 186702487aa1a75b3b704d8ee25a7837 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 497 510 3.6E-55 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3080 186702487aa1a75b3b704d8ee25a7837 548 Gene3D G3DSA:3.40.50.10490 98 291 1.9E-240 T 14-10-2018 YP_2712 6ce092debab657de7404ac7b972afee5 501 Gene3D G3DSA:3.40.640.10 121 485 1.8E-116 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_2712 6ce092debab657de7404ac7b972afee5 501 Pfam PF00392 Bacterial regulatory proteins, gntR family 27 88 4.2E-17 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_2712 6ce092debab657de7404ac7b972afee5 501 SUPERFAMILY SSF46785 26 90 5.07E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_2712 6ce092debab657de7404ac7b972afee5 501 SUPERFAMILY SSF53383 135 493 1.28E-88 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_2712 6ce092debab657de7404ac7b972afee5 501 Pfam PF00155 Aminotransferase class I and II 149 460 1.7E-24 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YP_2712 6ce092debab657de7404ac7b972afee5 501 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 62 3.6E-7 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_2712 6ce092debab657de7404ac7b972afee5 501 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 62 78 3.6E-7 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_2712 6ce092debab657de7404ac7b972afee5 501 SMART SM00345 29 88 1.3E-18 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_2712 6ce092debab657de7404ac7b972afee5 501 Gene3D G3DSA:1.10.10.10 23 107 1.1E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1436 250fa86586b8980a76e027ca0d7582b3 382 SUPERFAMILY SSF53383 5 353 3.81E-81 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_1436 250fa86586b8980a76e027ca0d7582b3 382 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 12 353 7.7E-122 T 14-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 YP_1436 250fa86586b8980a76e027ca0d7582b3 382 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 212 221 - T 14-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 YP_1436 250fa86586b8980a76e027ca0d7582b3 382 Gene3D G3DSA:3.40.640.10 55 259 1.4E-134 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_1436 250fa86586b8980a76e027ca0d7582b3 382 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 10 356 55.503 T 14-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 YP_1436 250fa86586b8980a76e027ca0d7582b3 382 Gene3D G3DSA:3.90.1150.10 10 348 1.4E-134 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_1436 250fa86586b8980a76e027ca0d7582b3 382 Pfam PF00155 Aminotransferase class I and II 47 352 6.2E-61 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YP_2449 ba1e015faf7f54c7bf0213e3c3c11f3d 438 SUPERFAMILY SSF54631 315 435 7.45E-13 T 14-10-2018 YP_2449 ba1e015faf7f54c7bf0213e3c3c11f3d 438 ProSitePatterns PS00211 ABC transporters family signature. 204 218 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2449 ba1e015faf7f54c7bf0213e3c3c11f3d 438 SMART SM00382 92 281 1.1E-19 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2449 ba1e015faf7f54c7bf0213e3c3c11f3d 438 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 76 433 2.5E-172 T 14-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 YP_2449 ba1e015faf7f54c7bf0213e3c3c11f3d 438 SUPERFAMILY SSF52540 82 311 6.48E-75 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2449 ba1e015faf7f54c7bf0213e3c3c11f3d 438 Pfam PF00005 ABC transporter 84 231 1.2E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2449 ba1e015faf7f54c7bf0213e3c3c11f3d 438 Gene3D G3DSA:3.40.50.300 72 330 9.5E-78 T 14-10-2018 YP_2449 ba1e015faf7f54c7bf0213e3c3c11f3d 438 Pfam PF00571 CBS domain 385 432 5.8E-5 T 14-10-2018 IPR000644 CBS domain YP_2449 ba1e015faf7f54c7bf0213e3c3c11f3d 438 Gene3D G3DSA:3.10.580.10 334 434 2.0E-9 T 14-10-2018 YP_1578 e4ffdf490f9114ca7bbf7d39dfd0a0e4 340 Pfam PF02653 Branched-chain amino acid transport system / permease component 53 330 3.3E-40 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_2428 4ae5871360756b7aec63822ecd95c6cc 245 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 45 225 1.4E-82 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2428 4ae5871360756b7aec63822ecd95c6cc 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 100 120 6.8E-63 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2428 4ae5871360756b7aec63822ecd95c6cc 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 121 141 6.8E-63 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2428 4ae5871360756b7aec63822ecd95c6cc 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 62 82 6.8E-63 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2428 4ae5871360756b7aec63822ecd95c6cc 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 201 225 6.8E-63 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2428 4ae5871360756b7aec63822ecd95c6cc 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 156 182 6.8E-63 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2428 4ae5871360756b7aec63822ecd95c6cc 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 45 62 6.8E-63 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2428 4ae5871360756b7aec63822ecd95c6cc 245 Pfam PF01578 Cytochrome C assembly protein 29 184 1.6E-31 T 14-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 YP_0417 b9ce5f32389b830307eb0e406ae8753a 243 Gene3D G3DSA:3.30.300.30 98 193 8.3E-33 T 14-10-2018 YP_0417 b9ce5f32389b830307eb0e406ae8753a 243 Pfam PF01514 Secretory protein of YscJ/FliF family 7 191 1.2E-28 T 14-10-2018 IPR006182 Secretory protein YscJ/FliF YP_0417 b9ce5f32389b830307eb0e406ae8753a 243 TIGRFAM TIGR02544 III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family 5 192 2.0E-74 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YP_0417 b9ce5f32389b830307eb0e406ae8753a 243 Gene3D G3DSA:3.30.70.1530 21 91 2.6E-26 T 14-10-2018 YP_0417 b9ce5f32389b830307eb0e406ae8753a 243 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 77 90 4.1E-18 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YP_0417 b9ce5f32389b830307eb0e406ae8753a 243 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 97 112 4.1E-18 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YP_0417 b9ce5f32389b830307eb0e406ae8753a 243 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 164 176 4.1E-18 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YP_0417 b9ce5f32389b830307eb0e406ae8753a 243 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 25 35 4.1E-18 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YP_0417 b9ce5f32389b830307eb0e406ae8753a 243 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 117 130 4.1E-18 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YP_0510 4caf89ada7a82d4e28d049fa118e702d 210 PIRSF PIRSF005901 24 210 5.6E-66 T 14-10-2018 IPR020599 Translation elongation factor P/YeiP YP_0510 4caf89ada7a82d4e28d049fa118e702d 210 SUPERFAMILY SSF50249 89 150 3.26E-18 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_0510 4caf89ada7a82d4e28d049fa118e702d 210 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 29 84 8.4E-24 T 14-10-2018 IPR013185 Translation elongation factor, KOW-like YP_0510 4caf89ada7a82d4e28d049fa118e702d 210 Gene3D G3DSA:2.40.50.140 152 210 5.5E-28 T 14-10-2018 YP_0510 4caf89ada7a82d4e28d049fa118e702d 210 Pfam PF01132 Elongation factor P (EF-P) OB domain 94 145 7.2E-22 T 14-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 YP_0510 4caf89ada7a82d4e28d049fa118e702d 210 Gene3D G3DSA:2.40.50.140 88 151 7.7E-30 T 14-10-2018 YP_0510 4caf89ada7a82d4e28d049fa118e702d 210 TIGRFAM TIGR00038 efp: translation elongation factor P 28 209 4.2E-76 T 14-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 YP_0510 4caf89ada7a82d4e28d049fa118e702d 210 ProSitePatterns PS01275 Elongation factor P signature. 174 193 - T 14-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site YP_0510 4caf89ada7a82d4e28d049fa118e702d 210 SUPERFAMILY SSF50249 152 209 1.56E-18 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_0510 4caf89ada7a82d4e28d049fa118e702d 210 SMART SM01185 91 145 2.3E-25 T 14-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 YP_0510 4caf89ada7a82d4e28d049fa118e702d 210 Pfam PF09285 Elongation factor P, C-terminal 153 208 6.4E-26 T 14-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 YP_0510 4caf89ada7a82d4e28d049fa118e702d 210 SMART SM00841 153 208 9.5E-33 T 14-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 YP_0510 4caf89ada7a82d4e28d049fa118e702d 210 Gene3D G3DSA:2.30.30.30 21 87 4.9E-27 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 YP_0510 4caf89ada7a82d4e28d049fa118e702d 210 Hamap MF_00141 Elongation factor P [efp]. 25 209 49.817 T 14-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 YP_0510 4caf89ada7a82d4e28d049fa118e702d 210 SUPERFAMILY SSF50104 28 86 7.22E-18 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily YP_3180 7f03e03d0105b803b1d97a39314559c3 359 SUPERFAMILY SSF160355 62 327 6.28E-83 T 14-10-2018 YP_3180 7f03e03d0105b803b1d97a39314559c3 359 Hamap MF_02025 ECA polysaccharide chain length modulation protein [wzzE]. 16 356 56.842 T 14-10-2018 IPR032895 ECA polysaccharide chain length modulation protein WzzE GO:0009246|GO:0016021 YP_3180 7f03e03d0105b803b1d97a39314559c3 359 Pfam PF02706 Chain length determinant protein 23 79 1.6E-13 T 14-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 YP_0328 cb5ce19a2617495042218086fca0b47c 349 Gene3D G3DSA:3.30.2350.20 16 336 1.6E-120 T 14-10-2018 YP_0328 cb5ce19a2617495042218086fca0b47c 349 Gene3D G3DSA:3.30.2340.10 166 300 1.6E-120 T 14-10-2018 YP_0328 cb5ce19a2617495042218086fca0b47c 349 SUPERFAMILY SSF55120 3 339 1.87E-106 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_0328 cb5ce19a2617495042218086fca0b47c 349 TIGRFAM TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family 3 340 7.0E-81 T 14-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_0328 cb5ce19a2617495042218086fca0b47c 349 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 190 336 8.8E-19 T 14-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_0328 cb5ce19a2617495042218086fca0b47c 349 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 8 166 1.2E-41 T 14-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_0328 cb5ce19a2617495042218086fca0b47c 349 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 4 341 28.516 T 14-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_0328 cb5ce19a2617495042218086fca0b47c 349 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 76 89 - T 14-10-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 YP_0408 2b0ead2e24a201e274c361877f42b874 210 Pfam PF00072 Response regulator receiver domain 6 116 2.7E-25 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0408 2b0ead2e24a201e274c361877f42b874 210 Gene3D G3DSA:3.40.50.12740 3 208 1.5E-57 T 14-10-2018 YP_0408 2b0ead2e24a201e274c361877f42b874 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 7.6E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_0408 2b0ead2e24a201e274c361877f42b874 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 7.6E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_0408 2b0ead2e24a201e274c361877f42b874 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 7.6E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_0408 2b0ead2e24a201e274c361877f42b874 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 6.0E-20 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_0408 2b0ead2e24a201e274c361877f42b874 210 SMART SM00448 3 116 1.2E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0408 2b0ead2e24a201e274c361877f42b874 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_0408 2b0ead2e24a201e274c361877f42b874 210 SUPERFAMILY SSF46894 144 208 1.19E-19 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_0408 2b0ead2e24a201e274c361877f42b874 210 SUPERFAMILY SSF52172 2 128 6.83E-31 T 14-10-2018 IPR011006 CheY-like superfamily YP_0408 2b0ead2e24a201e274c361877f42b874 210 SMART SM00421 146 203 8.8E-20 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1526 0ba10e4106836df4e96c866b4617c37b 182 PIRSF PIRSF000847 1 180 1.2E-43 T 14-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 YP_1526 0ba10e4106836df4e96c866b4617c37b 182 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 14-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 YP_1526 0ba10e4106836df4e96c866b4617c37b 182 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 71 3.4E-17 T 14-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 YP_1526 0ba10e4106836df4e96c866b4617c37b 182 Hamap MF_01437 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [pgsA]. 1 182 32.649 T 14-10-2018 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 YP_1526 0ba10e4106836df4e96c866b4617c37b 182 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 180 5.9E-60 T 14-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 YP_1526 0ba10e4106836df4e96c866b4617c37b 182 Gene3D G3DSA:1.20.120.1760 4 176 1.1E-13 T 14-10-2018 YP_3489 dc0b90315080ac0278a953bf782a9073 415 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 49 320 1.8E-123 T 14-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 YP_3489 dc0b90315080ac0278a953bf782a9073 415 Gene3D G3DSA:1.10.340.30 65 176 3.6E-88 T 14-10-2018 YP_3489 dc0b90315080ac0278a953bf782a9073 415 SUPERFAMILY SSF48150 47 269 2.04E-78 T 14-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 YP_3489 dc0b90315080ac0278a953bf782a9073 415 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 80 211 4.0E-21 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 YP_3489 dc0b90315080ac0278a953bf782a9073 415 Gene3D G3DSA:1.10.1670.10 54 255 3.6E-88 T 14-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 YP_3489 dc0b90315080ac0278a953bf782a9073 415 ProSitePatterns PS01155 Endonuclease III family signature. 146 175 - T 14-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 YP_3489 dc0b90315080ac0278a953bf782a9073 415 SMART SM00525 235 255 2.6E-4 T 14-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 YP_3489 dc0b90315080ac0278a953bf782a9073 415 SUPERFAMILY SSF55811 264 390 5.27E-24 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YP_3489 dc0b90315080ac0278a953bf782a9073 415 Gene3D G3DSA:3.90.79.10 266 394 1.2E-11 T 14-10-2018 YP_3489 dc0b90315080ac0278a953bf782a9073 415 Pfam PF00633 Helix-hairpin-helix motif 144 171 1.0E-8 T 14-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 YP_3489 dc0b90315080ac0278a953bf782a9073 415 SMART SM00478 83 234 2.2E-51 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 YP_3489 dc0b90315080ac0278a953bf782a9073 415 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 236 252 6.9E-4 T 14-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 YP_3489 dc0b90315080ac0278a953bf782a9073 415 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 236 252 - T 14-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 YP_3489 dc0b90315080ac0278a953bf782a9073 415 Pfam PF14815 NUDIX domain 277 386 1.1E-23 T 14-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 YP_0586 6911cb32b94c96760f650d1285816272 495 Gene3D G3DSA:3.30.1480.10 1 129 2.1E-46 T 14-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 YP_0586 6911cb32b94c96760f650d1285816272 495 SMART SM00322 301 358 0.19 T 14-10-2018 IPR004087 K Homology domain GO:0003676 YP_0586 6911cb32b94c96760f650d1285816272 495 SMART SM00322 230 293 17.0 T 14-10-2018 IPR004087 K Homology domain GO:0003676 YP_0586 6911cb32b94c96760f650d1285816272 495 SUPERFAMILY SSF50249 133 199 2.23E-16 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_0586 6911cb32b94c96760f650d1285816272 495 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 410 29.039 T 14-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 YP_0586 6911cb32b94c96760f650d1285816272 495 SMART SM00316 133 200 8.9E-7 T 14-10-2018 IPR022967 RNA-binding domain, S1 YP_0586 6911cb32b94c96760f650d1285816272 495 SUPERFAMILY SSF54814 279 342 6.54E-15 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 YP_0586 6911cb32b94c96760f650d1285816272 495 SUPERFAMILY SSF47794 429 492 1.88E-17 T 14-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 YP_0586 6911cb32b94c96760f650d1285816272 495 Gene3D G3DSA:1.10.150.20 431 490 2.2E-25 T 14-10-2018 YP_0586 6911cb32b94c96760f650d1285816272 495 SUPERFAMILY SSF54814 202 278 1.18E-28 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 YP_0586 6911cb32b94c96760f650d1285816272 495 Gene3D G3DSA:3.30.300.20 278 346 1.1E-23 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta YP_0586 6911cb32b94c96760f650d1285816272 495 SUPERFAMILY SSF69705 1 126 5.62E-42 T 14-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 YP_0586 6911cb32b94c96760f650d1285816272 495 Gene3D G3DSA:3.30.300.20 199 277 9.5E-31 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta YP_0586 6911cb32b94c96760f650d1285816272 495 Gene3D G3DSA:1.10.150.20 352 421 3.0E-31 T 14-10-2018 YP_0586 6911cb32b94c96760f650d1285816272 495 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 342 6.7E-130 T 14-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 YP_0586 6911cb32b94c96760f650d1285816272 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 441 489 4.2E-18 T 14-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication YP_0586 6911cb32b94c96760f650d1285816272 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 365 414 5.9E-21 T 14-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication YP_0586 6911cb32b94c96760f650d1285816272 495 SUPERFAMILY SSF47794 355 415 1.52E-16 T 14-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 YP_0586 6911cb32b94c96760f650d1285816272 495 Pfam PF14520 Helix-hairpin-helix domain 432 486 1.7E-9 T 14-10-2018 YP_0586 6911cb32b94c96760f650d1285816272 495 Gene3D G3DSA:2.40.50.140 135 198 6.8E-19 T 14-10-2018 YP_0586 6911cb32b94c96760f650d1285816272 495 Pfam PF08529 NusA N-terminal domain 4 123 8.7E-37 T 14-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 YP_0586 6911cb32b94c96760f650d1285816272 495 Pfam PF13184 NusA-like KH domain 230 297 8.1E-28 T 14-10-2018 IPR025249 KH domain, NusA-like GO:0003723 YP_1458 b6c11fd3652a9e929a61a94f946cab60 456 Gene3D G3DSA:3.90.1260.10 75 368 1.1E-119 T 14-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 YP_1458 b6c11fd3652a9e929a61a94f946cab60 456 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 18 26 - T 14-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 YP_1458 b6c11fd3652a9e929a61a94f946cab60 456 Hamap MF_00581 Argininosuccinate synthase [argG]. 2 453 74.134 T 14-10-2018 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YP_1458 b6c11fd3652a9e929a61a94f946cab60 456 SUPERFAMILY SSF52402 4 187 7.68E-35 T 14-10-2018 YP_1458 b6c11fd3652a9e929a61a94f946cab60 456 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 130 141 - T 14-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 YP_1458 b6c11fd3652a9e929a61a94f946cab60 456 SUPERFAMILY SSF69864 191 443 8.63E-81 T 14-10-2018 YP_1458 b6c11fd3652a9e929a61a94f946cab60 456 Gene3D G3DSA:1.10.287.400 378 441 2.6E-33 T 14-10-2018 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YP_1458 b6c11fd3652a9e929a61a94f946cab60 456 Gene3D G3DSA:3.40.50.620 15 192 1.1E-119 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_1458 b6c11fd3652a9e929a61a94f946cab60 456 TIGRFAM TIGR00032 argG: argininosuccinate synthase 14 420 2.9E-166 T 14-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 YP_1458 b6c11fd3652a9e929a61a94f946cab60 456 Pfam PF00764 Arginosuccinate synthase 17 410 2.0E-58 T 14-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 YP_3547 1baa7363df8a1b39b760a2e8ca4b047d 443 SUPERFAMILY SSF56935 51 443 7.32E-109 T 14-10-2018 YP_3547 1baa7363df8a1b39b760a2e8ca4b047d 443 Pfam PF02264 LamB porin 53 443 5.7E-107 T 14-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 YP_3547 1baa7363df8a1b39b760a2e8ca4b047d 443 Hamap MF_01301 Maltoporin [lamB]. 26 443 44.576 T 14-10-2018 IPR023738 Maltoporin GO:0009279|GO:0015481|GO:0015768|GO:0042956|GO:0042958 YP_3547 1baa7363df8a1b39b760a2e8ca4b047d 443 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 58 438 0.0 T 14-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 YP_3547 1baa7363df8a1b39b760a2e8ca4b047d 443 Gene3D G3DSA:2.40.170.10 51 443 3.9E-112 T 14-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 YP_3100 6564287274480ae46cc73af368d628a1 173 Gene3D G3DSA:1.20.120.1370 1 156 9.8E-54 T 14-10-2018 IPR038309 Rsd/AlgQ superfamily YP_3100 6564287274480ae46cc73af368d628a1 173 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 5 153 2.0E-55 T 14-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 YP_3100 6564287274480ae46cc73af368d628a1 173 Hamap MF_01181 Regulator of sigma D [rsd]. 5 157 40.669 T 14-10-2018 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd YP_3100 6564287274480ae46cc73af368d628a1 173 PIRSF PIRSF016548 5 165 4.8E-51 T 14-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 YP_1982 1692d9e9e4269dfd39df8c2662fdcac8 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 244 308 1.1E-20 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YP_1982 1692d9e9e4269dfd39df8c2662fdcac8 333 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1982 1692d9e9e4269dfd39df8c2662fdcac8 333 SUPERFAMILY SSF52540 45 310 7.72E-69 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1982 1692d9e9e4269dfd39df8c2662fdcac8 333 Pfam PF00005 ABC transporter 36 192 2.7E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1982 1692d9e9e4269dfd39df8c2662fdcac8 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 244 326 1.2E-24 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YP_1982 1692d9e9e4269dfd39df8c2662fdcac8 333 Gene3D G3DSA:3.40.50.300 12 329 1.2E-96 T 14-10-2018 YP_1982 1692d9e9e4269dfd39df8c2662fdcac8 333 SMART SM00382 44 250 4.3E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_pCRY29 40a6c2ec199b766ac63e9210e12f3f2e 93 Pfam PF01381 Helix-turn-helix 36 86 4.3E-13 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_pCRY29 40a6c2ec199b766ac63e9210e12f3f2e 93 SMART SM00530 35 90 8.7E-11 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_pCRY29 40a6c2ec199b766ac63e9210e12f3f2e 93 SUPERFAMILY SSF47413 24 86 6.44E-16 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_pCRY29 40a6c2ec199b766ac63e9210e12f3f2e 93 Gene3D G3DSA:1.10.260.40 14 90 4.5E-17 T 14-10-2018 YP_0301 211f4af551afff9e97b201733c282113 233 SUPERFAMILY SSF53167 1 229 1.06E-73 T 14-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 YP_0301 211f4af551afff9e97b201733c282113 233 Pfam PF01048 Phosphorylase superfamily 2 226 2.4E-46 T 14-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 YP_0301 211f4af551afff9e97b201733c282113 233 Gene3D G3DSA:3.40.50.1580 1 232 2.3E-67 T 14-10-2018 YP_0301 211f4af551afff9e97b201733c282113 233 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 226 4.7E-113 T 14-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YP_0301 211f4af551afff9e97b201733c282113 233 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 229 46.826 T 14-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YP_0067 75b036a4a4126578e953652e051d25b3 158 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 5 146 3.5E-69 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 YP_0067 75b036a4a4126578e953652e051d25b3 158 Gene3D G3DSA:3.10.420.10 1 152 1.0E-62 T 14-10-2018 IPR035958 SecB-like superfamily YP_0067 75b036a4a4126578e953652e051d25b3 158 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 13 30 1.7E-41 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 YP_0067 75b036a4a4126578e953652e051d25b3 158 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 123 141 1.7E-41 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 YP_0067 75b036a4a4126578e953652e051d25b3 158 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 73 93 1.7E-41 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 YP_0067 75b036a4a4126578e953652e051d25b3 158 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 97 119 1.7E-41 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 YP_0067 75b036a4a4126578e953652e051d25b3 158 SUPERFAMILY SSF54611 2 141 2.4E-53 T 14-10-2018 IPR035958 SecB-like superfamily YP_0067 75b036a4a4126578e953652e051d25b3 158 Hamap MF_00821 Protein-export protein SecB [secB]. 1 145 33.658 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 YP_0067 75b036a4a4126578e953652e051d25b3 158 Pfam PF02556 Preprotein translocase subunit SecB 5 144 1.5E-57 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 SUPERFAMILY SSF55957 357 445 7.19E-21 T 14-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 7 443 1.1E-194 T 14-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 364 4.9E-32 T 14-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 Gene3D G3DSA:3.40.120.10 3 154 8.1E-49 T 14-10-2018 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 5.3E-14 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 5.3E-14 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 5.3E-14 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 SUPERFAMILY SSF53738 258 365 7.06E-31 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 SUPERFAMILY SSF53738 156 256 2.59E-30 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 Gene3D G3DSA:3.40.120.10 257 339 2.6E-64 T 14-10-2018 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 442 1.9E-14 T 14-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 3 445 47.355 T 14-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 135 9.1E-46 T 14-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 Gene3D G3DSA:3.40.120.10 175 362 2.6E-64 T 14-10-2018 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 Gene3D G3DSA:3.30.310.50 370 446 2.6E-24 T 14-10-2018 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 14-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 SUPERFAMILY SSF53738 2 181 1.02E-49 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0583 917ffccec3c58d39b1f52151e6074ab4 446 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 254 4.9E-20 T 14-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_0046 9ab99f9e3e64a0bcb7222fa44029c815 215 SUPERFAMILY SSF53271 2 212 3.98E-50 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like YP_0046 9ab99f9e3e64a0bcb7222fa44029c815 215 Pfam PF00156 Phosphoribosyl transferase domain 49 159 9.7E-12 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 YP_0046 9ab99f9e3e64a0bcb7222fa44029c815 215 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 215 35.258 T 14-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YP_0046 9ab99f9e3e64a0bcb7222fa44029c815 215 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 10 187 1.6E-66 T 14-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YP_0046 9ab99f9e3e64a0bcb7222fa44029c815 215 Gene3D G3DSA:3.40.50.2020 1 213 9.1E-78 T 14-10-2018 YP_0430 bc1917175c3cce57f570bba1878ddd88 89 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 22 46 - T 14-10-2018 IPR001455 TusA-like domain YP_0430 bc1917175c3cce57f570bba1878ddd88 89 Gene3D G3DSA:3.30.110.40 17 89 1.5E-30 T 14-10-2018 IPR036868 TusA-like domain superfamily YP_0430 bc1917175c3cce57f570bba1878ddd88 89 Pfam PF01206 Sulfurtransferase TusA 21 89 2.4E-19 T 14-10-2018 IPR001455 TusA-like domain YP_0430 bc1917175c3cce57f570bba1878ddd88 89 SUPERFAMILY SSF64307 10 89 2.09E-24 T 14-10-2018 IPR036868 TusA-like domain superfamily YP_1839 5c3129ab4a7b53acb03a6fb170124833 219 Pfam PF08242 Methyltransferase domain 54 151 4.7E-9 T 14-10-2018 IPR013217 Methyltransferase type 12 YP_1839 5c3129ab4a7b53acb03a6fb170124833 219 SUPERFAMILY SSF53335 36 207 6.52E-16 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1839 5c3129ab4a7b53acb03a6fb170124833 219 PIRSF PIRSF011491 1 219 3.8E-96 T 14-10-2018 IPR016584 Methyltransferase VrtF-like YP_1839 5c3129ab4a7b53acb03a6fb170124833 219 Gene3D G3DSA:3.40.50.150 22 207 4.3E-13 T 14-10-2018 YP_2677 1c0c6397883675a65f10d878172ef6fb 78 Hamap MF_01566 UPF0370 protein YpfN [ypfN]. 15 76 28.52 T 14-10-2018 IPR020910 Uncharacterised protein family UPF0370 YP_2677 1c0c6397883675a65f10d878172ef6fb 78 Pfam PF13980 Uncharacterised protein family (UPF0370) 15 75 1.3E-37 T 14-10-2018 IPR020910 Uncharacterised protein family UPF0370 YP_0379 a349d14299f68b80755c3040a235e6ea 356 SMART SM00382 59 230 1.1E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0379 a349d14299f68b80755c3040a235e6ea 356 SUPERFAMILY SSF54752 272 327 1.96E-20 T 14-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal YP_0379 a349d14299f68b80755c3040a235e6ea 356 PRINTS PR00142 RecA protein signature 212 240 1.2E-84 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YP_0379 a349d14299f68b80755c3040a235e6ea 356 PRINTS PR00142 RecA protein signature 129 158 1.2E-84 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YP_0379 a349d14299f68b80755c3040a235e6ea 356 PRINTS PR00142 RecA protein signature 299 316 1.2E-84 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YP_0379 a349d14299f68b80755c3040a235e6ea 356 PRINTS PR00142 RecA protein signature 167 196 1.2E-84 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YP_0379 a349d14299f68b80755c3040a235e6ea 356 PRINTS PR00142 RecA protein signature 245 274 1.2E-84 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YP_0379 a349d14299f68b80755c3040a235e6ea 356 PRINTS PR00142 RecA protein signature 95 124 1.2E-84 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YP_0379 a349d14299f68b80755c3040a235e6ea 356 Gene3D G3DSA:3.40.50.300 28 269 3.2E-81 T 14-10-2018 YP_0379 a349d14299f68b80755c3040a235e6ea 356 Hamap MF_00268 Protein RecA [recA]. 7 331 50.697 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YP_0379 a349d14299f68b80755c3040a235e6ea 356 ProSitePatterns PS00321 recA signature. 215 223 - T 14-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 YP_0379 a349d14299f68b80755c3040a235e6ea 356 Pfam PF00154 recA bacterial DNA recombination protein 9 270 8.3E-141 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YP_0379 a349d14299f68b80755c3040a235e6ea 356 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 6 326 3.2E-170 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YP_0379 a349d14299f68b80755c3040a235e6ea 356 Gene3D G3DSA:3.30.250.10 271 329 1.0E-25 T 14-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal YP_0379 a349d14299f68b80755c3040a235e6ea 356 SUPERFAMILY SSF52540 6 269 5.12E-64 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1744 e2afff79b72f8a2c9235b929d37cc9ff 430 SUPERFAMILY SSF53850 26 427 9.32E-64 T 14-10-2018 YP_1744 e2afff79b72f8a2c9235b929d37cc9ff 430 Gene3D G3DSA:3.40.190.10 139 415 4.4E-162 T 14-10-2018 YP_1744 e2afff79b72f8a2c9235b929d37cc9ff 430 Pfam PF01547 Bacterial extracellular solute-binding protein 47 333 7.4E-25 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein YP_1744 e2afff79b72f8a2c9235b929d37cc9ff 430 Gene3D G3DSA:3.40.190.10 30 373 4.4E-162 T 14-10-2018 YP_0776 f89865f9bec855ee7200119bdb887e77 784 SMART SM00382 348 492 6.2E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0776 f89865f9bec855ee7200119bdb887e77 784 PIRSF PIRSF001174 1 775 0.0 T 14-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 YP_0776 f89865f9bec855ee7200119bdb887e77 784 Gene3D G3DSA:1.10.8.60 491 584 5.1E-33 T 14-10-2018 YP_0776 f89865f9bec855ee7200119bdb887e77 784 Gene3D G3DSA:3.30.230.10 585 772 1.6E-86 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_0776 f89865f9bec855ee7200119bdb887e77 784 Gene3D G3DSA:3.40.50.300 314 490 4.9E-61 T 14-10-2018 YP_0776 f89865f9bec855ee7200119bdb887e77 784 Gene3D G3DSA:1.20.58.1480 120 245 3.2E-47 T 14-10-2018 YP_0776 f89865f9bec855ee7200119bdb887e77 784 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 352 489 9.7E-18 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_0776 f89865f9bec855ee7200119bdb887e77 784 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 676 684 - T 14-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 YP_0776 f89865f9bec855ee7200119bdb887e77 784 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 201 7.2E-44 T 14-10-2018 IPR003111 Lon, substrate-binding domain YP_0776 f89865f9bec855ee7200119bdb887e77 784 SUPERFAMILY SSF88697 10 201 7.46E-53 T 14-10-2018 IPR015947 PUA-like superfamily YP_0776 f89865f9bec855ee7200119bdb887e77 784 SUPERFAMILY SSF52540 313 586 3.95E-51 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0776 f89865f9bec855ee7200119bdb887e77 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 356 375 4.0E-56 T 14-10-2018 YP_0776 f89865f9bec855ee7200119bdb887e77 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 595 611 4.0E-56 T 14-10-2018 YP_0776 f89865f9bec855ee7200119bdb887e77 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 673 692 4.0E-56 T 14-10-2018 YP_0776 f89865f9bec855ee7200119bdb887e77 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 726 744 4.0E-56 T 14-10-2018 YP_0776 f89865f9bec855ee7200119bdb887e77 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 703 722 4.0E-56 T 14-10-2018 YP_0776 f89865f9bec855ee7200119bdb887e77 784 TIGRFAM TIGR00763 lon: endopeptidase La 12 770 0.0 T 14-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 YP_0776 f89865f9bec855ee7200119bdb887e77 784 Gene3D G3DSA:2.30.130.40 1 118 3.7E-38 T 14-10-2018 YP_0776 f89865f9bec855ee7200119bdb887e77 784 Hamap MF_01973 Lon protease [lon]. 11 772 72.135 T 14-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 YP_0776 f89865f9bec855ee7200119bdb887e77 784 SMART SM00464 10 202 5.0E-84 T 14-10-2018 IPR003111 Lon, substrate-binding domain YP_0776 f89865f9bec855ee7200119bdb887e77 784 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 570 772 9.3E-96 T 14-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 YP_0776 f89865f9bec855ee7200119bdb887e77 784 SUPERFAMILY SSF54211 595 770 1.48E-58 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0362 fe7632104c811f9eaf7fb256c1150e3d 205 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_0362 fe7632104c811f9eaf7fb256c1150e3d 205 TIGRFAM TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B 4 163 5.9E-78 T 14-10-2018 IPR014297 Dimethylsulphoxide reductase, chain B YP_0362 fe7632104c811f9eaf7fb256c1150e3d 205 Pfam PF13247 4Fe-4S dicluster domain 59 152 8.1E-27 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_0362 fe7632104c811f9eaf7fb256c1150e3d 205 Gene3D G3DSA:3.30.70.20 1 204 1.6E-53 T 14-10-2018 YP_0362 fe7632104c811f9eaf7fb256c1150e3d 205 SUPERFAMILY SSF54862 3 200 2.3E-68 T 14-10-2018 YP_0362 fe7632104c811f9eaf7fb256c1150e3d 205 Pfam PF12800 4Fe-4S binding domain 12 25 0.0023 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2791 247b5fbb3f1e52cb33bbed792bc9b793 1171 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 302 745 1.3E-177 T 14-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_2791 247b5fbb3f1e52cb33bbed792bc9b793 1171 Pfam PF02811 PHP domain 19 182 1.1E-43 T 14-10-2018 IPR004013 PHP domain GO:0003824 YP_2791 247b5fbb3f1e52cb33bbed792bc9b793 1171 Gene3D G3DSA:1.10.10.1600 444 521 3.8E-34 T 14-10-2018 YP_2791 247b5fbb3f1e52cb33bbed792bc9b793 1171 Gene3D G3DSA:3.20.20.140 4 281 7.0E-95 T 14-10-2018 YP_2791 247b5fbb3f1e52cb33bbed792bc9b793 1171 Pfam PF14579 Helix-hairpin-helix motif 819 908 5.3E-25 T 14-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_2791 247b5fbb3f1e52cb33bbed792bc9b793 1171 Pfam PF01336 OB-fold nucleic acid binding domain 1011 1082 1.4E-7 T 14-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 YP_2791 247b5fbb3f1e52cb33bbed792bc9b793 1171 Gene3D G3DSA:1.10.150.870 788 897 4.7E-5 T 14-10-2018 YP_2791 247b5fbb3f1e52cb33bbed792bc9b793 1171 SMART SM00481 18 85 1.4E-29 T 14-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal YP_2791 247b5fbb3f1e52cb33bbed792bc9b793 1171 SUPERFAMILY SSF89550 17 274 6.67E-18 T 14-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 YP_2791 247b5fbb3f1e52cb33bbed792bc9b793 1171 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 17 1042 0.0 T 14-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_2791 247b5fbb3f1e52cb33bbed792bc9b793 1171 Gene3D G3DSA:2.40.50.140 993 1085 2.0E-5 T 14-10-2018 YP_pMT005 ff06f3af48c617bbe975495825733118 978 Pfam PF03406 Phage tail fibre repeat 421 456 2.8E-15 T 14-10-2018 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 YP_pMT005 ff06f3af48c617bbe975495825733118 978 Gene3D G3DSA:3.90.1340.10 735 788 1.4E-22 T 14-10-2018 IPR037053 Phage tail collar domain superfamily YP_pMT005 ff06f3af48c617bbe975495825733118 978 SUPERFAMILY SSF88874 730 870 3.14E-27 T 14-10-2018 YP_pMT005 ff06f3af48c617bbe975495825733118 978 Pfam PF03335 Phage tail fibre repeat 858 871 7.1 T 14-10-2018 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 GO:0005198 YP_pMT005 ff06f3af48c617bbe975495825733118 978 Pfam PF03335 Phage tail fibre repeat 919 930 0.53 T 14-10-2018 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 GO:0005198 YP_pMT005 ff06f3af48c617bbe975495825733118 978 Pfam PF03335 Phage tail fibre repeat 937 947 7.2 T 14-10-2018 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 GO:0005198 YP_pMT005 ff06f3af48c617bbe975495825733118 978 Pfam PF03335 Phage tail fibre repeat 928 939 0.35 T 14-10-2018 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 GO:0005198 YP_pMT005 ff06f3af48c617bbe975495825733118 978 Pfam PF03335 Phage tail fibre repeat 844 857 0.038 T 14-10-2018 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 GO:0005198 YP_pMT005 ff06f3af48c617bbe975495825733118 978 Pfam PF03335 Phage tail fibre repeat 904 917 0.24 T 14-10-2018 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 GO:0005198 YP_pMT005 ff06f3af48c617bbe975495825733118 978 Pfam PF03335 Phage tail fibre repeat 802 815 2.5 T 14-10-2018 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 GO:0005198 YP_pMT005 ff06f3af48c617bbe975495825733118 978 Pfam PF03335 Phage tail fibre repeat 946 956 2.0 T 14-10-2018 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 GO:0005198 YP_pMT005 ff06f3af48c617bbe975495825733118 978 SUPERFAMILY SSF88874 887 977 9.15E-6 T 14-10-2018 YP_pMT005 ff06f3af48c617bbe975495825733118 978 Pfam PF07484 Phage Tail Collar Domain 740 786 5.0E-11 T 14-10-2018 IPR011083 Phage tail collar domain YP_1387 65a075d89c0708f01561883b37d47015 222 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1387 65a075d89c0708f01561883b37d47015 222 SUPERFAMILY SSF52540 1 218 2.01E-68 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1387 65a075d89c0708f01561883b37d47015 222 Gene3D G3DSA:3.40.50.300 1 221 6.0E-63 T 14-10-2018 YP_1387 65a075d89c0708f01561883b37d47015 222 SMART SM00382 30 217 3.4E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1387 65a075d89c0708f01561883b37d47015 222 Pfam PF00005 ABC transporter 21 169 2.3E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2042 6eed149baabe6ea5705274ffdf7ef522 659 SUPERFAMILY SSF142019 94 303 1.96E-59 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2042 6eed149baabe6ea5705274ffdf7ef522 659 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 13 445 1.4E-179 T 14-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 YP_2042 6eed149baabe6ea5705274ffdf7ef522 659 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 139 283 1.3E-47 T 14-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2042 6eed149baabe6ea5705274ffdf7ef522 659 Gene3D G3DSA:3.30.70.20 372 446 1.8E-11 T 14-10-2018 YP_2042 6eed149baabe6ea5705274ffdf7ef522 659 Pfam PF13375 RnfC Barrel sandwich hybrid domain 14 115 3.7E-28 T 14-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain YP_2042 6eed149baabe6ea5705274ffdf7ef522 659 Pfam PF13237 4Fe-4S dicluster domain 373 427 2.7E-10 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2042 6eed149baabe6ea5705274ffdf7ef522 659 Pfam PF10531 SLBB domain 296 344 7.9E-11 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2042 6eed149baabe6ea5705274ffdf7ef522 659 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 659 242.911 T 14-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 YP_2042 6eed149baabe6ea5705274ffdf7ef522 659 Gene3D G3DSA:3.40.50.11540 144 283 6.9E-12 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2042 6eed149baabe6ea5705274ffdf7ef522 659 SUPERFAMILY SSF46548 336 444 9.42E-22 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YP_2042 6eed149baabe6ea5705274ffdf7ef522 659 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 416 427 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2042 6eed149baabe6ea5705274ffdf7ef522 659 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 377 388 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_0027 bcbaa36752e151277c84ace93c0113ce 607 Pfam PF00679 Elongation factor G C-terminus 397 476 3.6E-21 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like YP_0027 bcbaa36752e151277c84ace93c0113ce 607 PRINTS PR00315 GTP-binding elongation factor signature 87 98 9.6E-15 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0027 bcbaa36752e151277c84ace93c0113ce 607 PRINTS PR00315 GTP-binding elongation factor signature 123 132 9.6E-15 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0027 bcbaa36752e151277c84ace93c0113ce 607 PRINTS PR00315 GTP-binding elongation factor signature 71 81 9.6E-15 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0027 bcbaa36752e151277c84ace93c0113ce 607 PRINTS PR00315 GTP-binding elongation factor signature 51 59 9.6E-15 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0027 bcbaa36752e151277c84ace93c0113ce 607 PRINTS PR00315 GTP-binding elongation factor signature 7 20 9.6E-15 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0027 bcbaa36752e151277c84ace93c0113ce 607 Gene3D G3DSA:3.40.50.300 1 198 1.1E-69 T 14-10-2018 YP_0027 bcbaa36752e151277c84ace93c0113ce 607 Gene3D G3DSA:2.40.30.10 199 299 4.8E-35 T 14-10-2018 YP_0027 bcbaa36752e151277c84ace93c0113ce 607 SUPERFAMILY SSF54980 398 512 3.26E-26 T 14-10-2018 IPR035647 EF-G domain III/V-like YP_0027 bcbaa36752e151277c84ace93c0113ce 607 SUPERFAMILY SSF50447 151 299 1.04E-33 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YP_0027 bcbaa36752e151277c84ace93c0113ce 607 SUPERFAMILY SSF52540 3 219 2.43E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0027 bcbaa36752e151277c84ace93c0113ce 607 Pfam PF03144 Elongation factor Tu domain 2 219 289 2.5E-10 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 YP_0027 bcbaa36752e151277c84ace93c0113ce 607 Pfam PF00009 Elongation factor Tu GTP binding domain 4 195 1.1E-57 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_0027 bcbaa36752e151277c84ace93c0113ce 607 Gene3D G3DSA:2.40.50.250 483 599 2.5E-126 T 14-10-2018 YP_0027 bcbaa36752e151277c84ace93c0113ce 607 Gene3D G3DSA:3.30.70.870 306 590 2.5E-126 T 14-10-2018 YP_0027 bcbaa36752e151277c84ace93c0113ce 607 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site YP_0027 bcbaa36752e151277c84ace93c0113ce 607 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 599 6.2E-289 T 14-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 YP_0027 bcbaa36752e151277c84ace93c0113ce 607 Gene3D G3DSA:3.30.70.240 389 482 2.5E-126 T 14-10-2018 YP_0027 bcbaa36752e151277c84ace93c0113ce 607 SUPERFAMILY SSF54980 302 387 1.58E-15 T 14-10-2018 IPR035647 EF-G domain III/V-like YP_0027 bcbaa36752e151277c84ace93c0113ce 607 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 134 7.5E-26 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YP_3685 32cf6c1eb1c0e70cce4cb283af51166d 434 Gene3D G3DSA:3.10.50.40 283 385 7.3E-86 T 14-10-2018 YP_3685 32cf6c1eb1c0e70cce4cb283af51166d 434 Gene3D G3DSA:1.10.4030.10 21 148 7.2E-44 T 14-10-2018 YP_3685 32cf6c1eb1c0e70cce4cb283af51166d 434 Pfam PF00639 PPIC-type PPIASE domain 289 381 7.0E-26 T 14-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 YP_3685 32cf6c1eb1c0e70cce4cb283af51166d 434 Pfam PF00639 PPIC-type PPIASE domain 178 272 2.2E-20 T 14-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 YP_3685 32cf6c1eb1c0e70cce4cb283af51166d 434 Pfam PF09312 SurA N-terminal domain 25 142 7.3E-47 T 14-10-2018 IPR015391 SurA N-terminal YP_3685 32cf6c1eb1c0e70cce4cb283af51166d 434 Hamap MF_01183 Chaperone SurA [surA]. 9 428 34.262 T 14-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 YP_3685 32cf6c1eb1c0e70cce4cb283af51166d 434 SUPERFAMILY SSF54534 283 385 4.51E-33 T 14-10-2018 YP_3685 32cf6c1eb1c0e70cce4cb283af51166d 434 SUPERFAMILY SSF109998 25 201 2.55E-44 T 14-10-2018 IPR027304 Trigger factor/SurA domain superfamily YP_3685 32cf6c1eb1c0e70cce4cb283af51166d 434 Gene3D G3DSA:3.10.50.40 175 386 7.3E-86 T 14-10-2018 YP_3685 32cf6c1eb1c0e70cce4cb283af51166d 434 SUPERFAMILY SSF54534 173 277 3.27E-28 T 14-10-2018 YP_2802 23e3d9eefa763815a206fb0e4d0e809f 381 PIRSF PIRSF006205 1 381 2.7E-144 T 14-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 YP_2802 23e3d9eefa763815a206fb0e4d0e809f 381 Gene3D G3DSA:3.40.50.720 1 133 3.9E-46 T 14-10-2018 YP_2802 23e3d9eefa763815a206fb0e4d0e809f 381 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 1 375 41.769 T 14-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 YP_2802 23e3d9eefa763815a206fb0e4d0e809f 381 SUPERFAMILY SSF69055 284 378 6.67E-29 T 14-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 YP_2802 23e3d9eefa763815a206fb0e4d0e809f 381 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 115 4.7E-37 T 14-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 YP_2802 23e3d9eefa763815a206fb0e4d0e809f 381 Pfam PF13288 DXP reductoisomerase C-terminal domain 254 370 2.8E-39 T 14-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 YP_2802 23e3d9eefa763815a206fb0e4d0e809f 381 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 378 8.6E-167 T 14-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 YP_2802 23e3d9eefa763815a206fb0e4d0e809f 381 Gene3D G3DSA:1.10.1740.10 295 381 1.3E-31 T 14-10-2018 YP_2802 23e3d9eefa763815a206fb0e4d0e809f 381 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 129 222 3.6E-37 T 14-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 YP_2802 23e3d9eefa763815a206fb0e4d0e809f 381 SUPERFAMILY SSF55347 109 257 5.89E-64 T 14-10-2018 YP_2802 23e3d9eefa763815a206fb0e4d0e809f 381 SUPERFAMILY SSF51735 1 133 5.57E-35 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1930 7fffdbd80003438762fa6380f3cbfb36 86 Gene3D G3DSA:1.10.1660.60 1 78 1.1E-22 T 14-10-2018 IPR038146 Bacteriophage 933W-like, putative excisionase superfamily YP_1930 7fffdbd80003438762fa6380f3cbfb36 86 Pfam PF06806 Putative excisionase (DUF1233) 4 73 9.7E-37 T 14-10-2018 IPR009634 Putative excisionase YP_3552 7db9a2fbc0fde570d8437ebbe3d73b6c 435 Gene3D G3DSA:1.10.3720.10 178 434 2.5E-62 T 14-10-2018 IPR035906 MetI-like superfamily YP_3552 7db9a2fbc0fde570d8437ebbe3d73b6c 435 SUPERFAMILY SSF160964 128 187 5.36E-8 T 14-10-2018 YP_3552 7db9a2fbc0fde570d8437ebbe3d73b6c 435 SUPERFAMILY SSF161098 182 418 1.14E-52 T 14-10-2018 IPR035906 MetI-like superfamily YP_3552 7db9a2fbc0fde570d8437ebbe3d73b6c 435 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 219 418 9.0E-22 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1550 c1979db1e4e1bddea1670eda78007a02 240 Pfam PF04545 Sigma-70, region 4 185 234 2.7E-17 T 14-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 YP_1550 c1979db1e4e1bddea1670eda78007a02 240 Pfam PF04539 Sigma-70 region 3 97 163 7.6E-13 T 14-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 YP_1550 c1979db1e4e1bddea1670eda78007a02 240 SUPERFAMILY SSF88659 90 162 4.19E-14 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_1550 c1979db1e4e1bddea1670eda78007a02 240 SUPERFAMILY SSF88659 150 238 3.18E-21 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_1550 c1979db1e4e1bddea1670eda78007a02 240 SUPERFAMILY SSF88946 5 88 1.88E-22 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 YP_1550 c1979db1e4e1bddea1670eda78007a02 240 Pfam PF04542 Sigma-70 region 2 16 88 2.4E-15 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 YP_1550 c1979db1e4e1bddea1670eda78007a02 240 PRINTS PR00046 Major sigma-70 factor signature 221 232 4.1E-12 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_1550 c1979db1e4e1bddea1670eda78007a02 240 PRINTS PR00046 Major sigma-70 factor signature 67 75 4.1E-12 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_1550 c1979db1e4e1bddea1670eda78007a02 240 PRINTS PR00046 Major sigma-70 factor signature 189 201 4.1E-12 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_1550 c1979db1e4e1bddea1670eda78007a02 240 PRINTS PR00046 Major sigma-70 factor signature 206 221 4.1E-12 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_1550 c1979db1e4e1bddea1670eda78007a02 240 PRINTS PR00046 Major sigma-70 factor signature 43 56 4.1E-12 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_1550 c1979db1e4e1bddea1670eda78007a02 240 Gene3D G3DSA:1.20.140.160 87 239 6.6E-45 T 14-10-2018 YP_1550 c1979db1e4e1bddea1670eda78007a02 240 PIRSF PIRSF000770 3 240 2.4E-39 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_1550 c1979db1e4e1bddea1670eda78007a02 240 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 206 232 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_1550 c1979db1e4e1bddea1670eda78007a02 240 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 236 1.7E-31 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 YP_1550 c1979db1e4e1bddea1670eda78007a02 240 Gene3D G3DSA:1.10.1740.10 4 85 8.4E-26 T 14-10-2018 YP_1550 c1979db1e4e1bddea1670eda78007a02 240 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 16 236 1.3E-82 T 14-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 YP_1550 c1979db1e4e1bddea1670eda78007a02 240 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 5 239 61.091 T 14-10-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 YP_0948 cbb91394d9f4e1b08618065d7a6c6119 538 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 244 535 6.9E-129 T 14-10-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type YP_0948 cbb91394d9f4e1b08618065d7a6c6119 538 Pfam PF13646 HEAT repeats 181 235 1.1E-8 T 14-10-2018 YP_0948 cbb91394d9f4e1b08618065d7a6c6119 538 Gene3D G3DSA:1.25.10.10 115 243 6.3E-9 T 14-10-2018 IPR011989 Armadillo-like helical YP_0948 cbb91394d9f4e1b08618065d7a6c6119 538 SUPERFAMILY SSF48371 127 234 1.04E-11 T 14-10-2018 IPR016024 Armadillo-type fold YP_0948 cbb91394d9f4e1b08618065d7a6c6119 538 Pfam PF02653 Branched-chain amino acid transport system / permease component 246 521 1.6E-49 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_1866 6d0daedd2c1d7a5a1c33b2a098a2d906 276 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 23 270 1.5E-89 T 14-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 YP_1866 6d0daedd2c1d7a5a1c33b2a098a2d906 276 SUPERFAMILY SSF53335 3 272 7.5E-58 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1866 6d0daedd2c1d7a5a1c33b2a098a2d906 276 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 179 185 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YP_1866 6d0daedd2c1d7a5a1c33b2a098a2d906 276 Gene3D G3DSA:1.10.8.10 1 84 1.7E-22 T 14-10-2018 YP_1866 6d0daedd2c1d7a5a1c33b2a098a2d906 276 Gene3D G3DSA:3.40.50.150 87 275 3.9E-61 T 14-10-2018 YP_1866 6d0daedd2c1d7a5a1c33b2a098a2d906 276 Pfam PF13847 Methyltransferase domain 111 250 2.5E-21 T 14-10-2018 IPR025714 Methyltransferase domain YP_1866 6d0daedd2c1d7a5a1c33b2a098a2d906 276 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 1 274 5.0E-88 T 14-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 YP_1866 6d0daedd2c1d7a5a1c33b2a098a2d906 276 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 4 274 46.086 T 14-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 YP_2984 763301205f03ded696dc0f04818ba119 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.9E-15 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2984 763301205f03ded696dc0f04818ba119 303 Gene3D G3DSA:3.40.190.10 164 264 7.0E-59 T 14-10-2018 YP_2984 763301205f03ded696dc0f04818ba119 303 SUPERFAMILY SSF46785 3 112 1.86E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_2984 763301205f03ded696dc0f04818ba119 303 Pfam PF03466 LysR substrate binding domain 91 292 5.3E-35 T 14-10-2018 IPR005119 LysR, substrate-binding YP_2984 763301205f03ded696dc0f04818ba119 303 Gene3D G3DSA:1.10.10.10 3 88 5.8E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2984 763301205f03ded696dc0f04818ba119 303 Gene3D G3DSA:3.40.190.10 93 290 7.0E-59 T 14-10-2018 YP_2984 763301205f03ded696dc0f04818ba119 303 SUPERFAMILY SSF53850 91 294 5.25E-36 T 14-10-2018 YP_1115 235630b3733d21b993f24f4c28b4c10b 315 Pfam PF04055 Radical SAM superfamily 85 245 2.8E-16 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YP_1115 235630b3733d21b993f24f4c28b4c10b 315 Gene3D G3DSA:3.20.20.70 76 288 3.5E-21 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_1115 235630b3733d21b993f24f4c28b4c10b 315 PIRSF PIRSF005963 3 315 8.3E-131 T 14-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 YP_1115 235630b3733d21b993f24f4c28b4c10b 315 Hamap MF_00206 Lipoyl synthase [lipA]. 1 315 157.581 T 14-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 YP_1115 235630b3733d21b993f24f4c28b4c10b 315 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 19 67 4.8E-8 T 14-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 YP_1115 235630b3733d21b993f24f4c28b4c10b 315 SUPERFAMILY SSF102114 47 310 1.7E-68 T 14-10-2018 YP_1115 235630b3733d21b993f24f4c28b4c10b 315 SMART SM00729 78 287 1.2E-16 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 YP_1115 235630b3733d21b993f24f4c28b4c10b 315 TIGRFAM TIGR00510 lipA: lipoyl synthase 15 315 2.4E-160 T 14-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 YP_1199 4c42639a835e09ba881ba8394024c542 763 Pfam PF00753 Metallo-beta-lactamase superfamily 514 690 1.6E-18 T 14-10-2018 IPR001279 Metallo-beta-lactamase YP_1199 4c42639a835e09ba881ba8394024c542 763 SUPERFAMILY SSF56281 505 751 1.57E-47 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_1199 4c42639a835e09ba881ba8394024c542 763 Pfam PF13567 Domain of unknown function (DUF4131) 33 162 2.9E-11 T 14-10-2018 IPR025405 Domain of unknown function DUF4131 YP_1199 4c42639a835e09ba881ba8394024c542 763 Gene3D G3DSA:3.60.15.10 503 740 6.6E-50 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_1199 4c42639a835e09ba881ba8394024c542 763 SMART SM00849 514 698 4.9E-15 T 14-10-2018 IPR001279 Metallo-beta-lactamase YP_1199 4c42639a835e09ba881ba8394024c542 763 Pfam PF03772 Competence protein 209 477 5.0E-52 T 14-10-2018 IPR004477 ComEC/Rec2-related protein YP_1199 4c42639a835e09ba881ba8394024c542 763 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 230 413 8.1E-38 T 14-10-2018 IPR004477 ComEC/Rec2-related protein YP_1199 4c42639a835e09ba881ba8394024c542 763 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 72 727 3.3E-182 T 14-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 YP_3555 7d862f9201505ec41dd67e4fb56a1246 535 SUPERFAMILY SSF52540 46 273 2.72E-51 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3555 7d862f9201505ec41dd67e4fb56a1246 535 SMART SM00382 321 515 1.6E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3555 7d862f9201505ec41dd67e4fb56a1246 535 SMART SM00382 72 261 3.1E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3555 7d862f9201505ec41dd67e4fb56a1246 535 Pfam PF00005 ABC transporter 313 466 2.6E-22 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3555 7d862f9201505ec41dd67e4fb56a1246 535 ProSitePatterns PS00211 ABC transporters family signature. 439 453 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3555 7d862f9201505ec41dd67e4fb56a1246 535 Gene3D G3DSA:3.40.50.300 39 292 2.3E-52 T 14-10-2018 YP_3555 7d862f9201505ec41dd67e4fb56a1246 535 SUPERFAMILY SSF52540 312 525 1.7E-45 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3555 7d862f9201505ec41dd67e4fb56a1246 535 Pfam PF00005 ABC transporter 63 213 2.1E-22 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3555 7d862f9201505ec41dd67e4fb56a1246 535 Gene3D G3DSA:3.40.50.300 307 533 1.6E-45 T 14-10-2018 YP_3029 e34ede3bd225624dcd702bcca735fa11 446 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 147 357 1.2E-66 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_3029 e34ede3bd225624dcd702bcca735fa11 446 SUPERFAMILY SSF52540 95 363 5.17E-90 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3029 e34ede3bd225624dcd702bcca735fa11 446 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 8 437 6.7E-160 T 14-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_3029 e34ede3bd225624dcd702bcca735fa11 446 Gene3D G3DSA:3.40.50.12240 15 440 3.3E-142 T 14-10-2018 YP_3029 e34ede3bd225624dcd702bcca735fa11 446 SMART SM00382 159 341 3.5E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3029 e34ede3bd225624dcd702bcca735fa11 446 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 348 357 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_1920 bbfa85f7f62484ed0b87b463b434cad4 270 PIRSF PIRSF003092 1 270 7.9E-99 T 14-10-2018 IPR025501 ATP binding protein MinD YP_1920 bbfa85f7f62484ed0b87b463b434cad4 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 1.5E-111 T 14-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 YP_1920 bbfa85f7f62484ed0b87b463b434cad4 270 SUPERFAMILY SSF52540 1 269 1.58E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1920 bbfa85f7f62484ed0b87b463b434cad4 270 Gene3D G3DSA:3.40.50.300 1 260 3.6E-76 T 14-10-2018 YP_1920 bbfa85f7f62484ed0b87b463b434cad4 270 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 227 2.1E-20 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain YP_3992 48efd09aa2001e01ac4457cb2a9db95a 552 Hamap MF_01016 Putative transport protein YidE [yidE]. 1 552 55.344 T 14-10-2018 IPR023018 Transport protein YidE, putative YP_3992 48efd09aa2001e01ac4457cb2a9db95a 552 Gene3D G3DSA:3.30.70.1450 288 365 2.3E-10 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YP_3992 48efd09aa2001e01ac4457cb2a9db95a 552 Pfam PF06826 Predicted Permease Membrane Region 10 179 8.6E-47 T 14-10-2018 IPR006512 YidE/YbjL duplication YP_3992 48efd09aa2001e01ac4457cb2a9db95a 552 Pfam PF06826 Predicted Permease Membrane Region 374 546 9.0E-46 T 14-10-2018 IPR006512 YidE/YbjL duplication YP_3992 48efd09aa2001e01ac4457cb2a9db95a 552 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 379 533 1.3E-49 T 14-10-2018 IPR006512 YidE/YbjL duplication YP_3992 48efd09aa2001e01ac4457cb2a9db95a 552 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 16 166 2.9E-44 T 14-10-2018 IPR006512 YidE/YbjL duplication YP_3992 48efd09aa2001e01ac4457cb2a9db95a 552 SUPERFAMILY SSF116726 206 271 1.7E-9 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YP_3992 48efd09aa2001e01ac4457cb2a9db95a 552 Gene3D G3DSA:3.30.70.1450 199 274 2.3E-8 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YP_3992 48efd09aa2001e01ac4457cb2a9db95a 552 SUPERFAMILY SSF116726 272 358 2.88E-12 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YP_3992 48efd09aa2001e01ac4457cb2a9db95a 552 Pfam PF02080 TrkA-C domain 293 359 1.1E-8 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YP_3992 48efd09aa2001e01ac4457cb2a9db95a 552 Pfam PF02080 TrkA-C domain 211 272 9.0E-7 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YP_1556 297a7bfb2250e8c88eb75112de1aaa48 292 Gene3D G3DSA:1.10.10.60 166 277 3.0E-19 T 14-10-2018 YP_1556 297a7bfb2250e8c88eb75112de1aaa48 292 SUPERFAMILY SSF46689 219 271 7.62E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_1556 297a7bfb2250e8c88eb75112de1aaa48 292 Pfam PF12833 Helix-turn-helix domain 191 266 2.8E-11 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_1556 297a7bfb2250e8c88eb75112de1aaa48 292 SMART SM00342 184 266 2.9E-17 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_1556 297a7bfb2250e8c88eb75112de1aaa48 292 SUPERFAMILY SSF51215 35 155 8.5E-5 T 14-10-2018 IPR037923 Transcription regulator HTH-like YP_1556 297a7bfb2250e8c88eb75112de1aaa48 292 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 250 266 4.3E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_1556 297a7bfb2250e8c88eb75112de1aaa48 292 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 235 250 4.3E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_0142 ba38b511ab295d7ae61665c277592317 226 SUPERFAMILY SSF56784 6 217 4.96E-43 T 14-10-2018 IPR036412 HAD-like superfamily YP_0142 ba38b511ab295d7ae61665c277592317 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 190 2.3E-11 T 14-10-2018 YP_0142 ba38b511ab295d7ae61665c277592317 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 136 152 2.7E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0142 ba38b511ab295d7ae61665c277592317 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 10 21 2.7E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0142 ba38b511ab295d7ae61665c277592317 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 105 118 2.7E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0142 ba38b511ab295d7ae61665c277592317 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 154 174 2.7E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0142 ba38b511ab295d7ae61665c277592317 226 Gene3D G3DSA:3.40.50.1000 9 202 9.5E-25 T 14-10-2018 IPR023214 HAD superfamily YP_0142 ba38b511ab295d7ae61665c277592317 226 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 13 191 6.1E-15 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0111 67f9874e9518899cc9f3d3326eb78e57 732 Gene3D G3DSA:1.10.8.630 2 113 4.3E-36 T 14-10-2018 YP_0111 67f9874e9518899cc9f3d3326eb78e57 732 TIGRFAM TIGR00595 priA: primosomal protein N' 221 730 2.7E-205 T 14-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 YP_0111 67f9874e9518899cc9f3d3326eb78e57 732 Gene3D G3DSA:3.40.50.300 184 379 1.7E-82 T 14-10-2018 YP_0111 67f9874e9518899cc9f3d3326eb78e57 732 SUPERFAMILY SSF52540 220 601 4.79E-40 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0111 67f9874e9518899cc9f3d3326eb78e57 732 SMART SM00487 195 395 5.0E-17 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_0111 67f9874e9518899cc9f3d3326eb78e57 732 Hamap MF_00983 Probable primosomal protein N' [priA]. 6 732 25.587 T 14-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 YP_0111 67f9874e9518899cc9f3d3326eb78e57 732 Pfam PF00271 Helicase conserved C-terminal domain 522 589 1.6E-5 T 14-10-2018 IPR001650 Helicase, C-terminal YP_0111 67f9874e9518899cc9f3d3326eb78e57 732 SMART SM00490 492 589 2.5E-8 T 14-10-2018 IPR001650 Helicase, C-terminal YP_0111 67f9874e9518899cc9f3d3326eb78e57 732 Pfam PF00270 DEAD/DEAH box helicase 219 364 9.6E-14 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YP_0480 610951319ea2fd167b536c244bad4baf 182 Hamap MF_00984 Single-stranded DNA-binding protein. 6 117 40.47 T 14-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 YP_0480 610951319ea2fd167b536c244bad4baf 182 PIRSF PIRSF002070 2 163 1.3E-40 T 14-10-2018 YP_0480 610951319ea2fd167b536c244bad4baf 182 Pfam PF00436 Single-strand binding protein family 6 112 7.4E-44 T 14-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 YP_0480 610951319ea2fd167b536c244bad4baf 182 Gene3D G3DSA:2.40.50.140 2 148 9.3E-54 T 14-10-2018 YP_0480 610951319ea2fd167b536c244bad4baf 182 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 182 1.0E-61 T 14-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 YP_0480 610951319ea2fd167b536c244bad4baf 182 SUPERFAMILY SSF50249 4 182 3.77E-63 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_2847 04917e00c499a950b4b40f93adb4d103 318 Gene3D G3DSA:1.10.40.60 203 274 1.3E-10 T 14-10-2018 IPR038072 GspK, central domain superfamily YP_2847 04917e00c499a950b4b40f93adb4d103 318 PIRSF PIRSF002786 1 318 1.0E-67 T 14-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 YP_2847 04917e00c499a950b4b40f93adb4d103 318 Pfam PF03934 Type II secretion system (T2SS), protein K 36 299 3.2E-16 T 14-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 YP_2847 04917e00c499a950b4b40f93adb4d103 318 Gene3D G3DSA:3.30.1300.30 40 295 1.3E-10 T 14-10-2018 YP_2847 04917e00c499a950b4b40f93adb4d103 318 SUPERFAMILY SSF158544 203 255 1.2E-11 T 14-10-2018 IPR038072 GspK, central domain superfamily YP_2847 04917e00c499a950b4b40f93adb4d103 318 Gene3D G3DSA:1.10.40.60 97 202 1.3E-10 T 14-10-2018 IPR038072 GspK, central domain superfamily YP_3216 7b672f7ea603d7b2880a6060eeb6257b 206 Pfam PF01810 LysE type translocator 14 205 1.2E-50 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 YP_3216 7b672f7ea603d7b2880a6060eeb6257b 206 TIGRFAM TIGR00949 2A76: homoserine/Threonine efflux protein 18 202 7.7E-60 T 14-10-2018 IPR004778 Homoserine/Threonine efflux protein GO:0016021 YP_1297 61b7d98b1c978477a7e1316676eaac94 524 Gene3D G3DSA:3.40.50.300 294 524 2.0E-36 T 14-10-2018 YP_1297 61b7d98b1c978477a7e1316676eaac94 524 SUPERFAMILY SSF52540 304 516 2.62E-34 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1297 61b7d98b1c978477a7e1316676eaac94 524 Pfam PF00005 ABC transporter 54 199 9.8E-21 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1297 61b7d98b1c978477a7e1316676eaac94 524 Gene3D G3DSA:3.40.50.300 31 257 1.1E-49 T 14-10-2018 YP_1297 61b7d98b1c978477a7e1316676eaac94 524 Pfam PF00005 ABC transporter 304 454 7.7E-15 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1297 61b7d98b1c978477a7e1316676eaac94 524 SUPERFAMILY SSF52540 34 249 3.72E-49 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1297 61b7d98b1c978477a7e1316676eaac94 524 ProSitePatterns PS00211 ABC transporters family signature. 427 441 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1297 61b7d98b1c978477a7e1316676eaac94 524 SMART SM00382 308 503 0.0032 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1297 61b7d98b1c978477a7e1316676eaac94 524 SMART SM00382 61 250 1.3E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3277 1f36be251c3ea54df3195f90e5550a5b 340 SMART SM01004 9 333 1.2E-239 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YP_3277 1f36be251c3ea54df3195f90e5550a5b 340 PIRSF PIRSF001415 2 336 5.2E-154 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YP_3277 1f36be251c3ea54df3195f90e5550a5b 340 Pfam PF00490 Delta-aminolevulinic acid dehydratase 12 332 2.0E-139 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YP_3277 1f36be251c3ea54df3195f90e5550a5b 340 SUPERFAMILY SSF51569 7 335 1.42E-143 T 14-10-2018 YP_3277 1f36be251c3ea54df3195f90e5550a5b 340 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 252 264 - T 14-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YP_3277 1f36be251c3ea54df3195f90e5550a5b 340 Gene3D G3DSA:3.20.20.70 3 337 2.3E-146 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3277 1f36be251c3ea54df3195f90e5550a5b 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 129 143 2.4E-56 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YP_3277 1f36be251c3ea54df3195f90e5550a5b 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 160 179 2.4E-56 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YP_3277 1f36be251c3ea54df3195f90e5550a5b 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 198 217 2.4E-56 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YP_3277 1f36be251c3ea54df3195f90e5550a5b 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 252 268 2.4E-56 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YP_3277 1f36be251c3ea54df3195f90e5550a5b 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 277 292 2.4E-56 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YP_3277 1f36be251c3ea54df3195f90e5550a5b 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 2.4E-56 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YP_2517 4552ec45de98101f8681438f0c62fbfc 318 Pfam PF17188 MucB/RseB C-terminal domain 219 312 1.5E-28 T 14-10-2018 IPR033436 MucB/RseB, C-terminal YP_2517 4552ec45de98101f8681438f0c62fbfc 318 Pfam PF03888 MucB/RseB N-terminal domain 27 196 1.8E-60 T 14-10-2018 IPR033434 MucB/RseB, N-terminal YP_2517 4552ec45de98101f8681438f0c62fbfc 318 Gene3D G3DSA:3.30.200.100 218 318 4.1E-30 T 14-10-2018 IPR038484 MucB/RseB, C-terminal domain superfamily YP_2517 4552ec45de98101f8681438f0c62fbfc 318 PIRSF PIRSF005427 1 318 7.9E-88 T 14-10-2018 IPR005588 MucB/RseB YP_2517 4552ec45de98101f8681438f0c62fbfc 318 Gene3D G3DSA:2.50.20.10 28 209 2.1E-52 T 14-10-2018 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 2.8E-96 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 2.8E-96 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 2.8E-96 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 47 72 2.8E-96 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 2.8E-96 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 2.8E-96 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 2.8E-96 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 2.8E-96 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 2.8E-96 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 2.8E-96 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 2.8E-96 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 2.8E-96 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 56 503 9.0E-135 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 280 334 - T 14-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 Gene3D G3DSA:1.20.210.10 30 565 3.5E-189 T 14-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 2 647 0.0 T 14-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 YP_0766 c7740246da51ef6159bc73f5a49cbcd2 663 SUPERFAMILY SSF81442 43 560 3.14E-179 T 14-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_1763 442f1e8bc67dffde94e2af7c1ca3dce4 484 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 375 475 5.6E-13 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_1763 442f1e8bc67dffde94e2af7c1ca3dce4 484 Gene3D G3DSA:3.30.450.140 42 193 3.8E-65 T 14-10-2018 IPR038429 PhoQ Sensor superfamily YP_1763 442f1e8bc67dffde94e2af7c1ca3dce4 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 457 7.4E-8 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_1763 442f1e8bc67dffde94e2af7c1ca3dce4 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 422 7.4E-8 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_1763 442f1e8bc67dffde94e2af7c1ca3dce4 484 SMART SM00387 373 479 1.3E-23 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_1763 442f1e8bc67dffde94e2af7c1ca3dce4 484 Gene3D G3DSA:3.30.565.10 334 483 1.3E-34 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_1763 442f1e8bc67dffde94e2af7c1ca3dce4 484 SMART SM00388 264 328 0.0017 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_1763 442f1e8bc67dffde94e2af7c1ca3dce4 484 Pfam PF08918 PhoQ Sensor 8 185 4.2E-89 T 14-10-2018 IPR015014 PhoQ Sensor GO:0000160|GO:0004673|GO:0005524|GO:0016020|GO:0018106|GO:0046872 YP_1763 442f1e8bc67dffde94e2af7c1ca3dce4 484 SUPERFAMILY SSF55874 335 475 6.16E-31 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_1763 442f1e8bc67dffde94e2af7c1ca3dce4 484 Gene3D G3DSA:1.10.287.130 214 321 3.6E-8 T 14-10-2018 YP_1763 442f1e8bc67dffde94e2af7c1ca3dce4 484 SUPERFAMILY SSF47384 247 322 6.28E-5 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_2112 85b7b95ba4ff562f67724d79f315d41b 463 Gene3D G3DSA:1.10.1040.10 267 460 5.1E-44 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YP_2112 85b7b95ba4ff562f67724d79f315d41b 463 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 203 440 1.4E-74 T 14-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 YP_2112 85b7b95ba4ff562f67724d79f315d41b 463 SUPERFAMILY SSF48179 268 455 1.63E-46 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_2112 85b7b95ba4ff562f67724d79f315d41b 463 PRINTS PR00084 Mannitol dehydrogenase signature 232 247 1.2E-15 T 14-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YP_2112 85b7b95ba4ff562f67724d79f315d41b 463 PRINTS PR00084 Mannitol dehydrogenase signature 162 175 1.2E-15 T 14-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YP_2112 85b7b95ba4ff562f67724d79f315d41b 463 PRINTS PR00084 Mannitol dehydrogenase signature 202 215 1.2E-15 T 14-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YP_2112 85b7b95ba4ff562f67724d79f315d41b 463 PRINTS PR00084 Mannitol dehydrogenase signature 12 22 1.2E-15 T 14-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YP_2112 85b7b95ba4ff562f67724d79f315d41b 463 SUPERFAMILY SSF51735 3 265 9.45E-74 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2112 85b7b95ba4ff562f67724d79f315d41b 463 Gene3D G3DSA:3.40.50.720 1 265 2.2E-80 T 14-10-2018 YP_2112 85b7b95ba4ff562f67724d79f315d41b 463 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 12 171 5.7E-36 T 14-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 YP_2884 5c196ee13252ab9eb7757d501087f858 652 Pfam PF13538 UvrD-like helicase C-terminal domain 575 621 1.8E-15 T 14-10-2018 IPR027785 UvrD-like helicase C-terminal domain YP_2884 5c196ee13252ab9eb7757d501087f858 652 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 7 646 2.0E-185 T 14-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 YP_2884 5c196ee13252ab9eb7757d501087f858 652 Gene3D G3DSA:3.40.50.300 512 635 8.5E-28 T 14-10-2018 YP_2884 5c196ee13252ab9eb7757d501087f858 652 Gene3D G3DSA:3.40.50.300 404 511 1.1E-27 T 14-10-2018 YP_2884 5c196ee13252ab9eb7757d501087f858 652 Gene3D G3DSA:3.40.50.300 115 373 1.7E-73 T 14-10-2018 YP_2884 5c196ee13252ab9eb7757d501087f858 652 Pfam PF13604 AAA domain 175 337 4.1E-32 T 14-10-2018 YP_2884 5c196ee13252ab9eb7757d501087f858 652 SUPERFAMILY SSF52540 6 399 3.09E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2884 5c196ee13252ab9eb7757d501087f858 652 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 14 644 51.876 T 14-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 YP_2884 5c196ee13252ab9eb7757d501087f858 652 SUPERFAMILY SSF52540 300 646 4.07E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2884 5c196ee13252ab9eb7757d501087f858 652 Gene3D G3DSA:1.10.10.1020 1 114 5.2E-33 T 14-10-2018 YP_1853 71238db76203c27b1d2684a20c7ce7eb 218 SUPERFAMILY SSF53822 3 197 5.65E-7 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_0327 9bf5d4bd469f5d10b73b5ef846ab6826 165 SUPERFAMILY SSF69765 3 161 9.68E-65 T 14-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 YP_0327 9bf5d4bd469f5d10b73b5ef846ab6826 165 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 5 160 1.7E-69 T 14-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 YP_0327 9bf5d4bd469f5d10b73b5ef846ab6826 165 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 4 161 36.623 T 14-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 YP_0327 9bf5d4bd469f5d10b73b5ef846ab6826 165 Pfam PF02542 YgbB family 4 159 4.3E-66 T 14-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 YP_0327 9bf5d4bd469f5d10b73b5ef846ab6826 165 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 40 55 - T 14-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 YP_0327 9bf5d4bd469f5d10b73b5ef846ab6826 165 Gene3D G3DSA:3.30.1330.50 2 165 6.6E-72 T 14-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 YP_1534 50c69805a86ea0ce805028c06e15ba75 474 PIRSF PIRSF006060 4 472 2.1E-68 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_1534 50c69805a86ea0ce805028c06e15ba75 474 ProSitePatterns PS00218 Amino acid permeases signature. 55 85 - T 14-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 YP_1534 50c69805a86ea0ce805028c06e15ba75 474 Gene3D G3DSA:1.20.1740.10 20 473 3.3E-59 T 14-10-2018 YP_1534 50c69805a86ea0ce805028c06e15ba75 474 Pfam PF00324 Amino acid permease 30 467 9.3E-114 T 14-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 YP_3979 e3798dc254b550841934e270cfe04032 643 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 381 457 6.9E-10 T 14-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 YP_3979 e3798dc254b550841934e270cfe04032 643 Gene3D G3DSA:3.40.930.10 494 640 3.1E-54 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YP_3979 e3798dc254b550841934e270cfe04032 643 Pfam PF02378 Phosphotransferase system, EIIC 18 278 1.1E-20 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 YP_3979 e3798dc254b550841934e270cfe04032 643 Gene3D G3DSA:3.40.50.2300 367 473 4.1E-36 T 14-10-2018 YP_3979 e3798dc254b550841934e270cfe04032 643 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 502 637 2.8E-33 T 14-10-2018 IPR002178 PTS EIIA type-2 domain YP_3979 e3798dc254b550841934e270cfe04032 643 SUPERFAMILY SSF55804 500 638 1.01E-40 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YP_3979 e3798dc254b550841934e270cfe04032 643 SUPERFAMILY SSF52794 379 469 3.66E-23 T 14-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 YP_3979 e3798dc254b550841934e270cfe04032 643 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 543 559 - T 14-10-2018 IPR002178 PTS EIIA type-2 domain YP_3979 e3798dc254b550841934e270cfe04032 643 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 9 344 6.5E-182 T 14-10-2018 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.197 YP_0886 a74fc7c873f3ee79ed6daf78115e2870 478 Gene3D G3DSA:3.20.20.80 1 477 1.5E-163 T 14-10-2018 YP_0886 a74fc7c873f3ee79ed6daf78115e2870 478 Pfam PF00232 Glycosyl hydrolase family 1 4 475 6.2E-128 T 14-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 YP_0886 a74fc7c873f3ee79ed6daf78115e2870 478 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 14-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site YP_0886 a74fc7c873f3ee79ed6daf78115e2870 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 393 404 1.0E-16 T 14-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 YP_0886 a74fc7c873f3ee79ed6daf78115e2870 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 415 432 1.0E-16 T 14-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 YP_0886 a74fc7c873f3ee79ed6daf78115e2870 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 440 452 1.0E-16 T 14-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 YP_0886 a74fc7c873f3ee79ed6daf78115e2870 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 306 320 1.0E-16 T 14-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 YP_0886 a74fc7c873f3ee79ed6daf78115e2870 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 372 380 1.0E-16 T 14-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 YP_0886 a74fc7c873f3ee79ed6daf78115e2870 478 SUPERFAMILY SSF51445 2 471 2.05E-160 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_0886 a74fc7c873f3ee79ed6daf78115e2870 478 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 372 380 - T 14-10-2018 IPR018120 Glycoside hydrolase family 1, active site YP_3947 07cf002515a8f4e09b25317e9c7cb42c 1177 Pfam PF06744 Type VI secretion protein IcmF C-terminal 929 1125 3.6E-58 T 14-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal YP_3947 07cf002515a8f4e09b25317e9c7cb42c 1177 SUPERFAMILY SSF52540 111 295 2.28E-8 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3947 07cf002515a8f4e09b25317e9c7cb42c 1177 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 26 1174 0.0 T 14-10-2018 IPR017731 Type VI secretion system, IcmF YP_3947 07cf002515a8f4e09b25317e9c7cb42c 1177 Gene3D G3DSA:3.40.50.300 127 304 4.2E-7 T 14-10-2018 YP_3947 07cf002515a8f4e09b25317e9c7cb42c 1177 Pfam PF06761 Intracellular multiplication and human macrophage-killing 508 821 3.2E-77 T 14-10-2018 IPR009612 ImcF-related YP_3947 07cf002515a8f4e09b25317e9c7cb42c 1177 Pfam PF14331 ImcF-related N-terminal domain 203 452 1.3E-70 T 14-10-2018 IPR025743 ImcF-related, N-terminal domain YP_1090 8541d1cd6ca788bb775597bdae8c5931 554 Gene3D G3DSA:3.40.50.620 194 514 3.1E-114 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_1090 8541d1cd6ca788bb775597bdae8c5931 554 PIRSF PIRSF001589 1 367 2.3E-108 T 14-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 YP_1090 8541d1cd6ca788bb775597bdae8c5931 554 PIRSF PIRSF001589 362 505 2.2E-28 T 14-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 YP_1090 8541d1cd6ca788bb775597bdae8c5931 554 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 371 2.2E-123 T 14-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 YP_1090 8541d1cd6ca788bb775597bdae8c5931 554 Pfam PF13537 Glutamine amidotransferase domain 48 165 7.7E-41 T 14-10-2018 IPR017932 Glutamine amidotransferase type 2 domain YP_1090 8541d1cd6ca788bb775597bdae8c5931 554 Pfam PF00733 Asparagine synthase 212 366 2.3E-58 T 14-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 YP_1090 8541d1cd6ca788bb775597bdae8c5931 554 Gene3D G3DSA:3.60.20.10 2 193 9.7E-75 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YP_1090 8541d1cd6ca788bb775597bdae8c5931 554 SUPERFAMILY SSF56235 1 196 1.89E-57 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YP_1090 8541d1cd6ca788bb775597bdae8c5931 554 SUPERFAMILY SSF52402 212 483 1.13E-74 T 14-10-2018 YP_1331 8c010ecc11ba1110bd446dc91a9ff3be 684 Gene3D G3DSA:3.40.50.300 500 682 1.5E-25 T 14-10-2018 YP_1331 8c010ecc11ba1110bd446dc91a9ff3be 684 Gene3D G3DSA:3.40.50.300 344 499 1.7E-21 T 14-10-2018 YP_1331 8c010ecc11ba1110bd446dc91a9ff3be 684 Pfam PF12462 DNA helicase IV / RNA helicase N terminal 1 164 6.7E-65 T 14-10-2018 IPR022161 DNA helicase IV, N-terminal domain YP_1331 8c010ecc11ba1110bd446dc91a9ff3be 684 Pfam PF13361 UvrD-like helicase C-terminal domain 587 659 5.6E-13 T 14-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 YP_1331 8c010ecc11ba1110bd446dc91a9ff3be 684 Pfam PF00580 UvrD/REP helicase N-terminal domain 197 490 2.0E-39 T 14-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 YP_1331 8c010ecc11ba1110bd446dc91a9ff3be 684 SUPERFAMILY SSF52540 195 675 2.03E-84 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1331 8c010ecc11ba1110bd446dc91a9ff3be 684 Gene3D G3DSA:3.40.50.300 188 335 4.6E-28 T 14-10-2018 YP_1696 56f721398bfd8e2a21b65e6dc00fc7d6 673 Pfam PF14883 Hypothetical glycosyl hydrolase family 13 318 645 1.3E-148 T 14-10-2018 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal YP_1696 56f721398bfd8e2a21b65e6dc00fc7d6 673 Gene3D G3DSA:3.20.20.80 308 672 4.0E-146 T 14-10-2018 YP_1696 56f721398bfd8e2a21b65e6dc00fc7d6 673 TIGRFAM TIGR03938 deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB 49 665 9.0E-278 T 14-10-2018 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB GO:0016810|GO:0043708 YP_1696 56f721398bfd8e2a21b65e6dc00fc7d6 673 Pfam PF01522 Polysaccharide deacetylase 103 270 6.4E-31 T 14-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 YP_1696 56f721398bfd8e2a21b65e6dc00fc7d6 673 SUPERFAMILY SSF88713 66 290 2.25E-36 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 YP_1696 56f721398bfd8e2a21b65e6dc00fc7d6 673 Gene3D G3DSA:3.20.20.370 42 307 5.1E-77 T 14-10-2018 YP_0908 5527cd9e162f682bb0dc093cc3a7faf1 240 Gene3D G3DSA:1.10.260.40 1 91 5.4E-36 T 14-10-2018 YP_0908 5527cd9e162f682bb0dc093cc3a7faf1 240 Pfam PF01381 Helix-turn-helix 25 73 3.7E-9 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_0908 5527cd9e162f682bb0dc093cc3a7faf1 240 SUPERFAMILY SSF51306 109 233 1.12E-26 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily YP_0908 5527cd9e162f682bb0dc093cc3a7faf1 240 SMART SM00530 16 75 3.4E-8 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_0908 5527cd9e162f682bb0dc093cc3a7faf1 240 Gene3D G3DSA:2.10.109.10 106 239 3.3E-50 T 14-10-2018 YP_0908 5527cd9e162f682bb0dc093cc3a7faf1 240 Pfam PF00717 Peptidase S24-like 152 223 7.8E-14 T 14-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C YP_0908 5527cd9e162f682bb0dc093cc3a7faf1 240 SUPERFAMILY SSF47413 1 92 2.65E-21 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_0606 1df792ab0469ca0afb47b553d4988f7d 200 Pfam PF02036 SCP-2 sterol transfer family 73 160 2.7E-19 T 14-10-2018 IPR003033 SCP2 sterol-binding domain YP_0606 1df792ab0469ca0afb47b553d4988f7d 200 SUPERFAMILY SSF55718 69 164 2.59E-23 T 14-10-2018 IPR036527 SCP2 sterol-binding domain superfamily YP_0606 1df792ab0469ca0afb47b553d4988f7d 200 PIRSF PIRSF025550 28 200 1.9E-82 T 14-10-2018 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT YP_0606 1df792ab0469ca0afb47b553d4988f7d 200 Gene3D G3DSA:3.30.1050.10 66 166 9.0E-10 T 14-10-2018 IPR036527 SCP2 sterol-binding domain superfamily YP_2776 cd4e07122b61efbf9ae8ce99c2bdf282 343 Pfam PF09383 NIL domain 268 339 6.6E-18 T 14-10-2018 IPR018449 NIL domain YP_2776 cd4e07122b61efbf9ae8ce99c2bdf282 343 SUPERFAMILY SSF52540 1 240 6.19E-84 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2776 cd4e07122b61efbf9ae8ce99c2bdf282 343 SMART SM00930 265 340 6.4E-24 T 14-10-2018 IPR018449 NIL domain YP_2776 cd4e07122b61efbf9ae8ce99c2bdf282 343 Pfam PF00005 ABC transporter 21 169 4.1E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2776 cd4e07122b61efbf9ae8ce99c2bdf282 343 Gene3D G3DSA:3.40.50.300 1 232 6.1E-78 T 14-10-2018 YP_2776 cd4e07122b61efbf9ae8ce99c2bdf282 343 SUPERFAMILY SSF55021 248 343 1.26E-24 T 14-10-2018 YP_2776 cd4e07122b61efbf9ae8ce99c2bdf282 343 SMART SM00382 30 217 4.3E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2776 cd4e07122b61efbf9ae8ce99c2bdf282 343 Gene3D G3DSA:3.30.70.260 233 343 1.2E-36 T 14-10-2018 YP_2776 cd4e07122b61efbf9ae8ce99c2bdf282 343 TIGRFAM TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein 1 343 1.6E-195 T 14-10-2018 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria GO:0005524|GO:0009276|GO:0048473|GO:0048474 YP_2776 cd4e07122b61efbf9ae8ce99c2bdf282 343 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2586 d70f841b84014439e5514e5d57bd9398 349 SUPERFAMILY SSF52540 4 242 3.77E-70 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2586 d70f841b84014439e5514e5d57bd9398 349 Gene3D G3DSA:3.40.50.300 2 270 4.4E-68 T 14-10-2018 YP_2586 d70f841b84014439e5514e5d57bd9398 349 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2586 d70f841b84014439e5514e5d57bd9398 349 Pfam PF00005 ABC transporter 19 163 3.0E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2586 d70f841b84014439e5514e5d57bd9398 349 SUPERFAMILY SSF50331 252 340 1.08E-6 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YP_2586 d70f841b84014439e5514e5d57bd9398 349 SMART SM00382 28 213 2.4E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 456 9.0E-210 T 14-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 Pfam PF00206 Lyase 6 301 8.0E-97 T 14-10-2018 IPR022761 Fumarate lyase, N-terminal YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 Gene3D G3DSA:1.10.275.10 1 107 1.1E-36 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 SUPERFAMILY SSF48557 3 456 3.46E-141 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 454 41.021 T 14-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 Pfam PF14698 Argininosuccinate lyase C-terminal 364 431 4.3E-23 T 14-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 14-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 1.2E-67 T 14-10-2018 YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 1.2E-67 T 14-10-2018 YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 1.2E-67 T 14-10-2018 YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 1.2E-67 T 14-10-2018 YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 1.2E-67 T 14-10-2018 YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 1.2E-67 T 14-10-2018 YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 2.7E-28 T 14-10-2018 IPR000362 Fumarate lyase family YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 2.7E-28 T 14-10-2018 IPR000362 Fumarate lyase family YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 2.7E-28 T 14-10-2018 IPR000362 Fumarate lyase family YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 2.7E-28 T 14-10-2018 IPR000362 Fumarate lyase family YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 Gene3D G3DSA:1.20.200.10 108 446 3.2E-148 T 14-10-2018 YP_3125 991a56e79f1f7cefa55629bb46cbc642 457 Gene3D G3DSA:1.10.40.30 363 433 3.2E-148 T 14-10-2018 YP_2693 97876bae930b3cae14600e6c0d4ea492 239 Gene3D G3DSA:1.10.8.60 173 239 1.6E-27 T 14-10-2018 YP_2693 97876bae930b3cae14600e6c0d4ea492 239 SUPERFAMILY SSF52540 24 217 1.33E-22 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2693 97876bae930b3cae14600e6c0d4ea492 239 Gene3D G3DSA:3.40.50.300 3 170 1.3E-35 T 14-10-2018 YP_2693 97876bae930b3cae14600e6c0d4ea492 239 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 49 69 1.3E-6 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like YP_2693 97876bae930b3cae14600e6c0d4ea492 239 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 137 164 1.3E-6 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like YP_2693 97876bae930b3cae14600e6c0d4ea492 239 Pfam PF00308 Bacterial dnaA protein 22 218 1.7E-17 T 14-10-2018 IPR013317 Chromosomal replication initiator protein DnaA YP_2693 97876bae930b3cae14600e6c0d4ea492 239 Hamap MF_01158 DnaA regulatory inactivator Hda [hda]. 11 239 58.653 T 14-10-2018 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae YP_2693 97876bae930b3cae14600e6c0d4ea492 239 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 12 237 8.2E-85 T 14-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 YP_2777 aa465b4bf5d0659069b05f7d8df2924f 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 214 1.4E-21 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2777 aa465b4bf5d0659069b05f7d8df2924f 217 Gene3D G3DSA:1.10.3720.10 1 217 2.6E-61 T 14-10-2018 IPR035906 MetI-like superfamily YP_2777 aa465b4bf5d0659069b05f7d8df2924f 217 SUPERFAMILY SSF161098 9 201 1.06E-47 T 14-10-2018 IPR035906 MetI-like superfamily YP_2475 9c1779582ec32a8ca804577ea9f63ea5 109 Gene3D G3DSA:1.10.890.10 28 104 3.2E-35 T 14-10-2018 IPR038303 HNS-dependent expression A/B superfamily YP_2475 9c1779582ec32a8ca804577ea9f63ea5 109 ProDom PD070929 HDEB PRECURSOR SIGNAL EXPORTED PERIPLASMIC SECRETED ECS4389 10K-L SEQUENCING DIRECT 34 102 2.0E-35 T 14-10-2018 YP_2475 9c1779582ec32a8ca804577ea9f63ea5 109 Hamap MF_00947 Acid stress chaperone HdeB [hdeB]. 1 101 28.616 T 14-10-2018 IPR028623 HNS-dependent expression B GO:0009268|GO:0051082 YP_2475 9c1779582ec32a8ca804577ea9f63ea5 109 SUPERFAMILY SSF47752 33 94 3.14E-5 T 14-10-2018 IPR036831 HNS-dependent expression A superfamily GO:0030288|GO:0071468 YP_2475 9c1779582ec32a8ca804577ea9f63ea5 109 Pfam PF06411 HdeA/HdeB family 9 94 9.6E-24 T 14-10-2018 IPR010486 HNS-dependent expression A/B YP_0476 85198453c298287723a4ea234f107d23 359 Gene3D G3DSA:2.40.37.10 8 352 1.5E-132 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 YP_0476 85198453c298287723a4ea234f107d23 359 SMART SM01005 233 357 2.8E-59 T 14-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YP_0476 85198453c298287723a4ea234f107d23 359 TIGRFAM TIGR00492 alr: alanine racemase 3 357 4.3E-133 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YP_0476 85198453c298287723a4ea234f107d23 359 Pfam PF01168 Alanine racemase, N-terminal domain 8 219 2.7E-72 T 14-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YP_0476 85198453c298287723a4ea234f107d23 359 PRINTS PR00992 Alanine racemase signature 26 42 1.2E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YP_0476 85198453c298287723a4ea234f107d23 359 PRINTS PR00992 Alanine racemase signature 60 78 1.2E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YP_0476 85198453c298287723a4ea234f107d23 359 PRINTS PR00992 Alanine racemase signature 192 219 1.2E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YP_0476 85198453c298287723a4ea234f107d23 359 PRINTS PR00992 Alanine racemase signature 155 166 1.2E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YP_0476 85198453c298287723a4ea234f107d23 359 PRINTS PR00992 Alanine racemase signature 249 264 1.2E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YP_0476 85198453c298287723a4ea234f107d23 359 PRINTS PR00992 Alanine racemase signature 266 281 1.2E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YP_0476 85198453c298287723a4ea234f107d23 359 PRINTS PR00992 Alanine racemase signature 339 352 1.2E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YP_0476 85198453c298287723a4ea234f107d23 359 PRINTS PR00992 Alanine racemase signature 120 132 1.2E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YP_0476 85198453c298287723a4ea234f107d23 359 PRINTS PR00992 Alanine racemase signature 287 304 1.2E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YP_0476 85198453c298287723a4ea234f107d23 359 SUPERFAMILY SSF50621 225 358 1.15E-42 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 YP_0476 85198453c298287723a4ea234f107d23 359 Pfam PF00842 Alanine racemase, C-terminal domain 233 356 1.9E-38 T 14-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YP_0476 85198453c298287723a4ea234f107d23 359 Gene3D G3DSA:3.20.20.10 10 217 1.5E-132 T 14-10-2018 IPR029066 PLP-binding barrel YP_0476 85198453c298287723a4ea234f107d23 359 SUPERFAMILY SSF51419 8 234 8.29E-72 T 14-10-2018 IPR029066 PLP-binding barrel YP_0476 85198453c298287723a4ea234f107d23 359 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 14-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YP_0476 85198453c298287723a4ea234f107d23 359 Hamap MF_01201 Alanine racemase. 1 357 34.212 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YP_2617 c2e9418e9419506b0df42d604cb91c23 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 299 7.5E-70 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YP_2617 c2e9418e9419506b0df42d604cb91c23 322 Gene3D G3DSA:3.40.50.1100 12 306 4.1E-125 T 14-10-2018 YP_2617 c2e9418e9419506b0df42d604cb91c23 322 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 311 3.1E-143 T 14-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 YP_2617 c2e9418e9419506b0df42d604cb91c23 322 TIGRFAM TIGR01136 cysKM: cysteine synthase 10 311 6.2E-136 T 14-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 YP_2617 c2e9418e9419506b0df42d604cb91c23 322 SUPERFAMILY SSF53686 4 309 1.57E-97 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_2617 c2e9418e9419506b0df42d604cb91c23 322 Gene3D G3DSA:3.40.50.1100 43 145 4.1E-125 T 14-10-2018 YP_2617 c2e9418e9419506b0df42d604cb91c23 322 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 14-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 YP_0808 6140810bea07c4c4c7ed660db78322e5 110 SUPERFAMILY SSF82607 11 104 1.57E-34 T 14-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily YP_0808 6140810bea07c4c4c7ed660db78322e5 110 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 99 22.965 T 14-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family YP_0808 6140810bea07c4c4c7ed660db78322e5 110 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 106 3.4E-41 T 14-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family YP_0808 6140810bea07c4c4c7ed660db78322e5 110 Pfam PF02575 YbaB/EbfC DNA-binding family 11 100 4.3E-35 T 14-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family YP_0808 6140810bea07c4c4c7ed660db78322e5 110 PIRSF PIRSF004555 3 110 7.6E-39 T 14-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family YP_0808 6140810bea07c4c4c7ed660db78322e5 110 Gene3D G3DSA:3.30.1310.10 1 110 7.6E-47 T 14-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily YP_0880 94c121da70d4240815ba1f221eb9d7e4 86 Gene3D G3DSA:1.10.3390.10 12 86 1.6E-34 T 14-10-2018 IPR023202 YejL-like superfamily YP_0880 94c121da70d4240815ba1f221eb9d7e4 86 PIRSF PIRSF006188 12 83 6.0E-35 T 14-10-2018 IPR009857 Uncharacterised protein family UPF0352 YP_0880 94c121da70d4240815ba1f221eb9d7e4 86 Hamap MF_00816 UPF0352 protein YejL [yejL]. 12 82 23.627 T 14-10-2018 IPR009857 Uncharacterised protein family UPF0352 YP_0880 94c121da70d4240815ba1f221eb9d7e4 86 ProDom PD027794 UPF0352 YEJL NTHI1007 CPS_2611 VF1649 VV1166 HD1515 VP2129 YPO1261/Y2923/YP0880 ECA2748 12 80 2.0E-27 T 14-10-2018 IPR009857 Uncharacterised protein family UPF0352 YP_0880 94c121da70d4240815ba1f221eb9d7e4 86 SUPERFAMILY SSF158651 12 86 3.66E-31 T 14-10-2018 IPR023202 YejL-like superfamily YP_0880 94c121da70d4240815ba1f221eb9d7e4 86 Pfam PF07208 Protein of unknown function (DUF1414) 37 80 1.8E-23 T 14-10-2018 IPR009857 Uncharacterised protein family UPF0352 YP_2467 d763161ddb53676f0ebc72e6826f0da2 158 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 32 127 9.9E-41 T 14-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2467 d763161ddb53676f0ebc72e6826f0da2 158 Hamap MF_01954 Urease subunit beta [ureB]. 29 129 29.427 T 14-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2467 d763161ddb53676f0ebc72e6826f0da2 158 SUPERFAMILY SSF51278 32 132 1.44E-42 T 14-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2467 d763161ddb53676f0ebc72e6826f0da2 158 Gene3D G3DSA:2.10.150.10 28 141 1.5E-49 T 14-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_2467 d763161ddb53676f0ebc72e6826f0da2 158 Pfam PF00699 Urease beta subunit 33 127 1.7E-40 T 14-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YP_3842 c6b95fcc952efc516e953a35d3917148 311 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YP_3842 c6b95fcc952efc516e953a35d3917148 311 Gene3D G3DSA:3.40.50.1370 8 304 2.2E-122 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 YP_3842 c6b95fcc952efc516e953a35d3917148 311 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 303 5.8E-28 T 14-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 YP_3842 c6b95fcc952efc516e953a35d3917148 311 SUPERFAMILY SSF53671 4 306 2.26E-99 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 YP_3842 c6b95fcc952efc516e953a35d3917148 311 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 7 307 38.709 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YP_3842 c6b95fcc952efc516e953a35d3917148 311 Gene3D G3DSA:3.40.50.1370 135 292 2.2E-122 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 YP_3842 c6b95fcc952efc516e953a35d3917148 311 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 8 305 5.1E-119 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YP_3842 c6b95fcc952efc516e953a35d3917148 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 260 269 4.6E-25 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YP_3842 c6b95fcc952efc516e953a35d3917148 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 4.6E-25 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YP_3842 c6b95fcc952efc516e953a35d3917148 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 293 4.6E-25 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YP_3842 c6b95fcc952efc516e953a35d3917148 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 4.6E-25 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YP_3842 c6b95fcc952efc516e953a35d3917148 311 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 4.4E-47 T 14-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 YP_3842 c6b95fcc952efc516e953a35d3917148 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 39 61 3.6E-36 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YP_3842 c6b95fcc952efc516e953a35d3917148 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 79 88 3.6E-36 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YP_3842 c6b95fcc952efc516e953a35d3917148 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 226 235 3.6E-36 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YP_3842 c6b95fcc952efc516e953a35d3917148 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 134 151 3.6E-36 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YP_3842 c6b95fcc952efc516e953a35d3917148 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 286 300 3.6E-36 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YP_3842 c6b95fcc952efc516e953a35d3917148 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 264 269 3.6E-36 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YP_0326 de46632055e46a226b424eff2a2aa0a6 241 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 10 230 43.092 T 14-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 YP_0326 de46632055e46a226b424eff2a2aa0a6 241 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 11 232 6.7E-82 T 14-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 YP_0326 de46632055e46a226b424eff2a2aa0a6 241 Gene3D G3DSA:3.90.550.10 6 238 1.5E-73 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_0326 de46632055e46a226b424eff2a2aa0a6 241 SUPERFAMILY SSF53448 11 231 5.85E-58 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_0326 de46632055e46a226b424eff2a2aa0a6 241 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 105 112 - T 14-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 YP_0326 de46632055e46a226b424eff2a2aa0a6 241 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 12 230 1.2E-73 T 14-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 YP_3989 b74caf8d346e745b5f51ac84003a59e0 687 SUPERFAMILY SSF51445 182 653 7.18E-77 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_3989 b74caf8d346e745b5f51ac84003a59e0 687 Gene3D G3DSA:3.20.20.80 177 417 7.4E-51 T 14-10-2018 YP_3989 b74caf8d346e745b5f51ac84003a59e0 687 PIRSF PIRSF036917 1 686 0.0 T 14-10-2018 IPR014635 Alpha-amylase, MalS type GO:0004556|GO:0005509|GO:0030980|GO:0042597|GO:0051692 KEGG: 00500+3.2.1.1 YP_3989 b74caf8d346e745b5f51ac84003a59e0 687 Gene3D G3DSA:3.20.20.80 433 654 8.3E-35 T 14-10-2018 YP_3989 b74caf8d346e745b5f51ac84003a59e0 687 SMART SM00642 195 647 4.1E-80 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YP_3989 b74caf8d346e745b5f51ac84003a59e0 687 Pfam PF00128 Alpha amylase, catalytic domain 228 606 1.3E-39 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YP_pMT100 c25bd3be88b4572da089c8e0e324b47b 168 Pfam PF07275 Antirestriction protein (ArdA) 10 166 1.1E-33 T 14-10-2018 IPR009899 Antirestriction YP_pMT100 c25bd3be88b4572da089c8e0e324b47b 168 Gene3D G3DSA:1.10.10.1190 112 166 6.2E-13 T 14-10-2018 YP_0446 77a9afe418efb35ceecb3687b44115ef 162 PIRSF PIRSF030837 1 161 2.5E-87 T 14-10-2018 IPR011233 Tellurite/Phi/PacB toxicity protection, TerW YP_0446 77a9afe418efb35ceecb3687b44115ef 162 SUPERFAMILY SSF46785 9 86 3.97E-8 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3368 904713339439af4202296d612cf4d556 463 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 85 180 2.8E-18 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YP_3368 904713339439af4202296d612cf4d556 463 Pfam PF05860 haemagglutination activity domain 70 183 9.1E-24 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YP_3368 904713339439af4202296d612cf4d556 463 SMART SM00912 67 184 5.8E-34 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YP_3368 904713339439af4202296d612cf4d556 463 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 300 340 1.4E-5 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YP_3368 904713339439af4202296d612cf4d556 463 SUPERFAMILY SSF51126 70 346 6.28E-45 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor YP_3368 904713339439af4202296d612cf4d556 463 Gene3D G3DSA:2.160.20.10 66 355 2.2E-65 T 14-10-2018 IPR012334 Pectin lyase fold YP_3993 206bfbd8e8089c9af73cd3c037afe422 168 Hamap MF_02001 Small heat shock protein IbpB [ibpB]. 15 161 49.04 T 14-10-2018 IPR022848 Small heat shock protein IbpB YP_3993 206bfbd8e8089c9af73cd3c037afe422 168 SUPERFAMILY SSF49764 44 148 9.77E-20 T 14-10-2018 IPR008978 HSP20-like chaperone YP_3993 206bfbd8e8089c9af73cd3c037afe422 168 Gene3D G3DSA:2.60.40.790 46 149 2.3E-21 T 14-10-2018 IPR008978 HSP20-like chaperone YP_3993 206bfbd8e8089c9af73cd3c037afe422 168 Pfam PF00011 Hsp20/alpha crystallin family 53 148 1.5E-16 T 14-10-2018 IPR002068 Alpha crystallin/Hsp20 domain YP_0053 68a2d5d37b459b98d11b552b4327bc28 269 SUPERFAMILY SSF57716 217 268 3.99E-17 T 14-10-2018 YP_0053 68a2d5d37b459b98d11b552b4327bc28 269 Pfam PF06827 Zinc finger found in FPG and IleRS 241 269 1.4E-9 T 14-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 YP_0053 68a2d5d37b459b98d11b552b4327bc28 269 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 269 42.986 T 14-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 YP_0053 68a2d5d37b459b98d11b552b4327bc28 269 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 129 218 2.5E-25 T 14-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 YP_0053 68a2d5d37b459b98d11b552b4327bc28 269 SMART SM00898 2 115 8.4E-54 T 14-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 YP_0053 68a2d5d37b459b98d11b552b4327bc28 269 Gene3D G3DSA:3.20.190.10 2 128 3.8E-43 T 14-10-2018 IPR035937 MutM-like, N-terminal YP_0053 68a2d5d37b459b98d11b552b4327bc28 269 ProSitePatterns PS01242 Zinc finger FPG-type signature. 244 268 - T 14-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 YP_0053 68a2d5d37b459b98d11b552b4327bc28 269 SUPERFAMILY SSF81624 2 138 2.75E-43 T 14-10-2018 IPR035937 MutM-like, N-terminal YP_0053 68a2d5d37b459b98d11b552b4327bc28 269 SMART SM01232 129 221 1.0E-47 T 14-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 YP_0053 68a2d5d37b459b98d11b552b4327bc28 269 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 2 114 3.2E-29 T 14-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 YP_0053 68a2d5d37b459b98d11b552b4327bc28 269 Gene3D G3DSA:1.10.8.50 139 269 3.2E-46 T 14-10-2018 YP_0053 68a2d5d37b459b98d11b552b4327bc28 269 SUPERFAMILY SSF46946 130 222 2.75E-29 T 14-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 YP_0053 68a2d5d37b459b98d11b552b4327bc28 269 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 268 1.5E-100 T 14-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 YP_0732 a84895ce8c39af5cc377eff5a31943de 609 Pfam PF02903 Alpha amylase, N-terminal ig-like domain 5 101 2.2E-7 T 14-10-2018 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain GO:0004553|GO:0005975 YP_0732 a84895ce8c39af5cc377eff5a31943de 609 Gene3D G3DSA:2.60.40.1180 522 604 1.2E-6 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta YP_0732 a84895ce8c39af5cc377eff5a31943de 609 SUPERFAMILY SSF51445 114 527 4.31E-92 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_0732 a84895ce8c39af5cc377eff5a31943de 609 Pfam PF00128 Alpha amylase, catalytic domain 174 490 2.6E-75 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YP_0732 a84895ce8c39af5cc377eff5a31943de 609 SUPERFAMILY SSF51011 527 604 1.44E-8 T 14-10-2018 YP_0732 a84895ce8c39af5cc377eff5a31943de 609 SMART SM00642 124 518 4.1E-88 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YP_0732 a84895ce8c39af5cc377eff5a31943de 609 SUPERFAMILY SSF81296 11 95 1.71E-5 T 14-10-2018 IPR014756 Immunoglobulin E-set YP_0732 a84895ce8c39af5cc377eff5a31943de 609 PIRSF PIRSF036918 1 606 7.5E-249 T 14-10-2018 IPR017069 Maltodextrin glucosidase GO:0004558|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.20|KEGG: 00500+3.2.1.20|MetaCyc: PWY-842 YP_0732 a84895ce8c39af5cc377eff5a31943de 609 Gene3D G3DSA:3.20.20.80 113 520 3.4E-127 T 14-10-2018 YP_1094 58f0b8047e7047f6b9c8f4192c0b67f2 370 SUPERFAMILY SSF52540 136 312 1.87E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1094 58f0b8047e7047f6b9c8f4192c0b67f2 370 Pfam PF02562 PhoH-like protein 137 340 7.0E-95 T 14-10-2018 IPR003714 PhoH-like protein GO:0005524 YP_1094 58f0b8047e7047f6b9c8f4192c0b67f2 370 Gene3D G3DSA:3.40.50.300 134 340 1.4E-74 T 14-10-2018 YP_3650 15ef7cdb739d474f06b16e79d222f8bd 365 Gene3D G3DSA:3.40.718.10 3 365 5.8E-155 T 14-10-2018 YP_3650 15ef7cdb739d474f06b16e79d222f8bd 365 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 7 361 51.298 T 14-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 YP_3650 15ef7cdb739d474f06b16e79d222f8bd 365 SMART SM01329 8 357 1.2E-198 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 YP_3650 15ef7cdb739d474f06b16e79d222f8bd 365 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 8 357 5.7E-135 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 YP_3650 15ef7cdb739d474f06b16e79d222f8bd 365 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 8 356 9.0E-166 T 14-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 YP_3650 15ef7cdb739d474f06b16e79d222f8bd 365 SUPERFAMILY SSF53659 2 361 1.23E-122 T 14-10-2018 YP_3650 15ef7cdb739d474f06b16e79d222f8bd 365 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 249 268 - T 14-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 YP_0771 a197bee84ce1f7652d5eabca07c765b2 106 PIRSF PIRSF003113 1 101 8.0E-33 T 14-10-2018 IPR002634 BolA protein YP_0771 a197bee84ce1f7652d5eabca07c765b2 106 Gene3D G3DSA:3.30.300.90 2 91 3.8E-35 T 14-10-2018 YP_0771 a197bee84ce1f7652d5eabca07c765b2 106 SUPERFAMILY SSF82657 3 90 3.01E-29 T 14-10-2018 IPR036065 BolA-like superfamily YP_0771 a197bee84ce1f7652d5eabca07c765b2 106 Pfam PF01722 BolA-like protein 12 85 4.6E-29 T 14-10-2018 IPR002634 BolA protein YP_3199 d9dd73fff759a3a5eb5bbea24cfba83f 850 PIRSF PIRSF001444 1 850 0.0 T 14-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 YP_3199 d9dd73fff759a3a5eb5bbea24cfba83f 850 ProSitePatterns PS01092 Adenylate cyclase class-I signature 1. 242 253 - T 14-10-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 YP_3199 d9dd73fff759a3a5eb5bbea24cfba83f 850 ProSitePatterns PS01093 Adenylate cyclase class-I signature 2. 598 612 - T 14-10-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 YP_3199 d9dd73fff759a3a5eb5bbea24cfba83f 850 Pfam PF01295 Adenylate cyclase, class-I 228 825 2.7E-262 T 14-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 YP_3199 d9dd73fff759a3a5eb5bbea24cfba83f 850 Pfam PF12633 Adenylate cyclase NT domain 5 200 9.8E-80 T 14-10-2018 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 YP_2086 cfea49032799593f3c2605620ebfc720 312 Gene3D G3DSA:3.40.50.12370 1 309 1.2E-127 T 14-10-2018 YP_2086 cfea49032799593f3c2605620ebfc720 312 SUPERFAMILY SSF52402 150 299 4.86E-24 T 14-10-2018 YP_2086 cfea49032799593f3c2605620ebfc720 312 SUPERFAMILY SSF52402 2 146 1.42E-25 T 14-10-2018 YP_2086 cfea49032799593f3c2605620ebfc720 312 Pfam PF00582 Universal stress protein family 2 140 1.8E-16 T 14-10-2018 IPR006016 UspA YP_2086 cfea49032799593f3c2605620ebfc720 312 Pfam PF00582 Universal stress protein family 168 294 1.0E-12 T 14-10-2018 IPR006016 UspA YP_0205 5c78bb18213f020c0e750cd3c31543fa 157 PIRSF PIRSF002560 1 157 2.6E-70 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YP_0205 5c78bb18213f020c0e750cd3c31543fa 157 Gene3D G3DSA:1.20.1260.10 1 157 1.7E-70 T 14-10-2018 IPR012347 Ferritin-like YP_0205 5c78bb18213f020c0e750cd3c31543fa 157 TIGRFAM TIGR00754 bfr: bacterioferritin 1 156 4.3E-80 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YP_0205 5c78bb18213f020c0e750cd3c31543fa 157 PRINTS PR00601 Bacterioferritin signature 3 22 3.3E-75 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YP_0205 5c78bb18213f020c0e750cd3c31543fa 157 PRINTS PR00601 Bacterioferritin signature 44 64 3.3E-75 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YP_0205 5c78bb18213f020c0e750cd3c31543fa 157 PRINTS PR00601 Bacterioferritin signature 128 149 3.3E-75 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YP_0205 5c78bb18213f020c0e750cd3c31543fa 157 PRINTS PR00601 Bacterioferritin signature 65 85 3.3E-75 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YP_0205 5c78bb18213f020c0e750cd3c31543fa 157 PRINTS PR00601 Bacterioferritin signature 23 43 3.3E-75 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YP_0205 5c78bb18213f020c0e750cd3c31543fa 157 PRINTS PR00601 Bacterioferritin signature 107 127 3.3E-75 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YP_0205 5c78bb18213f020c0e750cd3c31543fa 157 PRINTS PR00601 Bacterioferritin signature 86 106 3.3E-75 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YP_0205 5c78bb18213f020c0e750cd3c31543fa 157 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YP_0205 5c78bb18213f020c0e750cd3c31543fa 157 Pfam PF00210 Ferritin-like domain 8 143 1.1E-38 T 14-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 YP_0205 5c78bb18213f020c0e750cd3c31543fa 157 SUPERFAMILY SSF47240 1 153 2.24E-52 T 14-10-2018 IPR009078 Ferritin-like superfamily YP_1274 ab07d713af53ba26135617a562136bb4 328 Pfam PF09383 NIL domain 255 326 1.9E-13 T 14-10-2018 IPR018449 NIL domain YP_1274 ab07d713af53ba26135617a562136bb4 328 SMART SM00382 30 226 1.8E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1274 ab07d713af53ba26135617a562136bb4 328 Gene3D G3DSA:3.30.70.260 247 328 1.1E-6 T 14-10-2018 YP_1274 ab07d713af53ba26135617a562136bb4 328 Pfam PF00005 ABC transporter 21 169 1.4E-34 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1274 ab07d713af53ba26135617a562136bb4 328 SUPERFAMILY SSF52540 1 236 2.1E-79 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1274 ab07d713af53ba26135617a562136bb4 328 Gene3D G3DSA:3.40.50.300 1 238 1.8E-72 T 14-10-2018 YP_1274 ab07d713af53ba26135617a562136bb4 328 SMART SM00930 251 328 2.2E-10 T 14-10-2018 IPR018449 NIL domain YP_1274 ab07d713af53ba26135617a562136bb4 328 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1274 ab07d713af53ba26135617a562136bb4 328 SUPERFAMILY SSF55021 253 327 2.86E-10 T 14-10-2018 YP_2175 c3293d1fbfa2c49b24aa02f189d494d5 400 SUPERFAMILY SSF103473 7 392 1.83E-59 T 14-10-2018 IPR036259 MFS transporter superfamily YP_2175 c3293d1fbfa2c49b24aa02f189d494d5 400 Pfam PF07690 Major Facilitator Superfamily 14 344 5.4E-41 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_2175 c3293d1fbfa2c49b24aa02f189d494d5 400 Gene3D G3DSA:1.20.1720.10 7 381 1.8E-82 T 14-10-2018 YP_2175 c3293d1fbfa2c49b24aa02f189d494d5 400 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 4 383 4.7E-110 T 14-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 YP_2674 0130fd972b2e1987561ffd590eb1e807 132 SUPERFAMILY SSF52833 11 123 6.86E-31 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_2674 0130fd972b2e1987561ffd590eb1e807 132 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 10 124 2.1E-42 T 14-10-2018 IPR006504 Transcriptional regulator Spx/MgsR YP_2674 0130fd972b2e1987561ffd590eb1e807 132 Gene3D G3DSA:3.40.30.10 9 124 5.5E-40 T 14-10-2018 YP_2674 0130fd972b2e1987561ffd590eb1e807 132 Pfam PF03960 ArsC family 13 122 1.9E-14 T 14-10-2018 IPR006660 Arsenate reductase-like YP_3519 2ae67bd6e19726b980a4684d810e7b8b 387 Pfam PF00162 Phosphoglycerate kinase 6 373 5.6E-140 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3519 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 2.6E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3519 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 2.6E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3519 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 2.6E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3519 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 2.6E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3519 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 2.6E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3519 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 2.6E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3519 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 2.6E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3519 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 2.6E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3519 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 2.6E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3519 2ae67bd6e19726b980a4684d810e7b8b 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 383 39.332 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3519 2ae67bd6e19726b980a4684d810e7b8b 387 Gene3D G3DSA:3.40.50.1260 165 373 2.0E-155 T 14-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3519 2ae67bd6e19726b980a4684d810e7b8b 387 Gene3D G3DSA:3.40.50.1260 10 378 2.0E-155 T 14-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3519 2ae67bd6e19726b980a4684d810e7b8b 387 PIRSF PIRSF000724 1 387 3.5E-133 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3519 2ae67bd6e19726b980a4684d810e7b8b 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 14-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3519 2ae67bd6e19726b980a4684d810e7b8b 387 SUPERFAMILY SSF53748 3 383 1.18E-144 T 14-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_1884 6285204267e111193cebab88fec238f9 194 Pfam PF13302 Acetyltransferase (GNAT) domain 17 162 1.7E-17 T 14-10-2018 IPR000182 GNAT domain YP_1884 6285204267e111193cebab88fec238f9 194 SUPERFAMILY SSF55729 12 186 2.47E-40 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_1884 6285204267e111193cebab88fec238f9 194 Gene3D G3DSA:3.40.630.30 10 191 2.8E-45 T 14-10-2018 YP_3388 6d9a799f78b0f010de952ea4e8889ea8 252 Pfam PF00005 ABC transporter 17 164 5.6E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3388 6d9a799f78b0f010de952ea4e8889ea8 252 Gene3D G3DSA:3.40.50.300 1 251 9.6E-65 T 14-10-2018 YP_3388 6d9a799f78b0f010de952ea4e8889ea8 252 SMART SM00382 26 213 3.4E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3388 6d9a799f78b0f010de952ea4e8889ea8 252 SUPERFAMILY SSF52540 1 225 8.26E-59 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1877 f0d1ae4e85ea9d292c2691aee96770f7 142 SMART SM01321 28 141 5.6E-30 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_1877 f0d1ae4e85ea9d292c2691aee96770f7 142 Pfam PF01797 Transposase IS200 like 29 135 8.0E-33 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_1877 f0d1ae4e85ea9d292c2691aee96770f7 142 SUPERFAMILY SSF143422 18 134 9.55E-44 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_1877 f0d1ae4e85ea9d292c2691aee96770f7 142 Gene3D G3DSA:3.30.70.1290 16 138 1.4E-36 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_3185 0577e2f0dd77a01c7096e52d2b9fe558 264 Gene3D G3DSA:3.40.630.30 16 263 1.4E-68 T 14-10-2018 YP_3185 0577e2f0dd77a01c7096e52d2b9fe558 264 SUPERFAMILY SSF55729 14 257 5.66E-30 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_3185 0577e2f0dd77a01c7096e52d2b9fe558 264 Hamap MF_02027 dTDP-fucosamine acetyltransferase [wecD]. 63 263 45.696 T 14-10-2018 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 MetaCyc: PWY-7315 YP_3185 0577e2f0dd77a01c7096e52d2b9fe558 264 Pfam PF00583 Acetyltransferase (GNAT) family 169 249 2.2E-13 T 14-10-2018 IPR000182 GNAT domain YP_3185 0577e2f0dd77a01c7096e52d2b9fe558 264 TIGRFAM TIGR02382 wecD_rffC: TDP-D-fucosamine acetyltransferase 63 263 1.6E-109 T 14-10-2018 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 MetaCyc: PWY-7315 YP_3261 cd3141a60ef3da5b512ab15b19a99a3c 758 Gene3D G3DSA:3.20.20.210 7 522 0.0 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 YP_3261 cd3141a60ef3da5b512ab15b19a99a3c 758 PIRSF PIRSF000382 2 758 0.0 T 14-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 YP_3261 cd3141a60ef3da5b512ab15b19a99a3c 758 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 8 756 0.0 T 14-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 YP_3261 cd3141a60ef3da5b512ab15b19a99a3c 758 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 429 751 9.6E-160 T 14-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 YP_3261 cd3141a60ef3da5b512ab15b19a99a3c 758 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 5 313 4.8E-127 T 14-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 YP_3261 cd3141a60ef3da5b512ab15b19a99a3c 758 SUPERFAMILY SSF51726 394 756 6.15E-119 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 YP_3261 cd3141a60ef3da5b512ab15b19a99a3c 758 SUPERFAMILY SSF51726 5 392 1.22E-113 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 YP_3261 cd3141a60ef3da5b512ab15b19a99a3c 758 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 3 756 37.598 T 14-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 YP_3261 cd3141a60ef3da5b512ab15b19a99a3c 758 Gene3D G3DSA:3.20.20.210 387 754 0.0 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 YP_1836 8ed86daa9a7bef489b3735622a81986b 720 SUPERFAMILY SSF82185 423 547 2.48E-19 T 14-10-2018 YP_1836 8ed86daa9a7bef489b3735622a81986b 720 SUPERFAMILY SSF82185 353 460 1.06E-12 T 14-10-2018 YP_1836 8ed86daa9a7bef489b3735622a81986b 720 Gene3D G3DSA:2.20.110.10 281 354 1.4E-8 T 14-10-2018 YP_1836 8ed86daa9a7bef489b3735622a81986b 720 SUPERFAMILY SSF81901 569 712 2.7E-33 T 14-10-2018 YP_1836 8ed86daa9a7bef489b3735622a81986b 720 Gene3D G3DSA:3.90.930.1 355 479 2.1E-19 T 14-10-2018 YP_1836 8ed86daa9a7bef489b3735622a81986b 720 Gene3D G3DSA:3.90.930.1 195 280 1.6E-9 T 14-10-2018 YP_1836 8ed86daa9a7bef489b3735622a81986b 720 Pfam PF07661 MORN repeat variant 357 376 0.017 T 14-10-2018 IPR011652 MORN variant YP_1836 8ed86daa9a7bef489b3735622a81986b 720 Pfam PF07661 MORN repeat variant 211 228 0.35 T 14-10-2018 IPR011652 MORN variant YP_1836 8ed86daa9a7bef489b3735622a81986b 720 Pfam PF07661 MORN repeat variant 307 326 0.016 T 14-10-2018 IPR011652 MORN variant YP_1836 8ed86daa9a7bef489b3735622a81986b 720 Pfam PF07661 MORN repeat variant 404 425 0.066 T 14-10-2018 IPR011652 MORN variant YP_1836 8ed86daa9a7bef489b3735622a81986b 720 Pfam PF07661 MORN repeat variant 384 400 0.44 T 14-10-2018 IPR011652 MORN variant YP_1836 8ed86daa9a7bef489b3735622a81986b 720 Pfam PF07661 MORN repeat variant 284 304 0.077 T 14-10-2018 IPR011652 MORN variant YP_1836 8ed86daa9a7bef489b3735622a81986b 720 Pfam PF07661 MORN repeat variant 259 278 0.15 T 14-10-2018 IPR011652 MORN variant YP_1836 8ed86daa9a7bef489b3735622a81986b 720 Pfam PF07661 MORN repeat variant 457 472 0.32 T 14-10-2018 IPR011652 MORN variant YP_1836 8ed86daa9a7bef489b3735622a81986b 720 SUPERFAMILY SSF82185 229 352 1.44E-20 T 14-10-2018 YP_1836 8ed86daa9a7bef489b3735622a81986b 720 SMART SM00671 671 706 7.4E-8 T 14-10-2018 IPR006597 Sel1-like repeat YP_1836 8ed86daa9a7bef489b3735622a81986b 720 SMART SM00671 635 670 7.4E-9 T 14-10-2018 IPR006597 Sel1-like repeat YP_1836 8ed86daa9a7bef489b3735622a81986b 720 SMART SM00671 599 634 5.4E-4 T 14-10-2018 IPR006597 Sel1-like repeat YP_1836 8ed86daa9a7bef489b3735622a81986b 720 SMART SM00671 567 598 1.6 T 14-10-2018 IPR006597 Sel1-like repeat YP_1836 8ed86daa9a7bef489b3735622a81986b 720 Pfam PF08238 Sel1 repeat 672 705 3.3E-5 T 14-10-2018 IPR006597 Sel1-like repeat YP_1836 8ed86daa9a7bef489b3735622a81986b 720 Pfam PF08238 Sel1 repeat 600 633 0.0084 T 14-10-2018 IPR006597 Sel1-like repeat YP_1836 8ed86daa9a7bef489b3735622a81986b 720 Pfam PF08238 Sel1 repeat 581 597 1.0 T 14-10-2018 IPR006597 Sel1-like repeat YP_1836 8ed86daa9a7bef489b3735622a81986b 720 Pfam PF08238 Sel1 repeat 635 670 2.2E-7 T 14-10-2018 IPR006597 Sel1-like repeat YP_1836 8ed86daa9a7bef489b3735622a81986b 720 Gene3D G3DSA:1.25.40.10 529 720 5.9E-49 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_1623 98895e449c1d7d6e84e03baf6ac73c2c 165 SMART SM00903 15 162 3.7E-49 T 14-10-2018 IPR002563 Flavin reductase like domain GO:0010181 YP_1623 98895e449c1d7d6e84e03baf6ac73c2c 165 TIGRFAM TIGR02296 HpaC: 4-hydroxyphenylacetate 3-monooxygenase, reductase component 11 164 1.1E-75 T 14-10-2018 IPR011982 4-hydroxyphenylacetate 3-monooxygenase, reductase component GO:0016651|GO:0042537|GO:0051287|GO:0055114 KEGG: 00740+1.5.1.36 YP_1623 98895e449c1d7d6e84e03baf6ac73c2c 165 SUPERFAMILY SSF50475 11 162 5.89E-44 T 14-10-2018 YP_1623 98895e449c1d7d6e84e03baf6ac73c2c 165 Gene3D G3DSA:2.30.110.10 1 164 2.9E-36 T 14-10-2018 IPR012349 FMN-binding split barrel GO:0048037 YP_1623 98895e449c1d7d6e84e03baf6ac73c2c 165 Pfam PF01613 Flavin reductase like domain 15 163 3.0E-24 T 14-10-2018 IPR002563 Flavin reductase like domain GO:0010181 YP_2809 24c32cb4bd3f9a4ec9ca77117b298d0b 912 SUPERFAMILY SSF55021 835 906 2.79E-10 T 14-10-2018 YP_2809 24c32cb4bd3f9a4ec9ca77117b298d0b 912 Pfam PF01842 ACT domain 837 897 5.7E-9 T 14-10-2018 IPR002912 ACT domain YP_2809 24c32cb4bd3f9a4ec9ca77117b298d0b 912 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 35 912 342.275 T 14-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 YP_2809 24c32cb4bd3f9a4ec9ca77117b298d0b 912 Pfam PF08335 GlnD PII-uridylyltransferase 213 352 5.6E-37 T 14-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 YP_2809 24c32cb4bd3f9a4ec9ca77117b298d0b 912 SUPERFAMILY SSF81301 21 210 7.91E-24 T 14-10-2018 YP_2809 24c32cb4bd3f9a4ec9ca77117b298d0b 912 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 69 906 6.4E-301 T 14-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 YP_2809 24c32cb4bd3f9a4ec9ca77117b298d0b 912 Gene3D G3DSA:1.10.3210.10 479 593 1.1E-7 T 14-10-2018 YP_2809 24c32cb4bd3f9a4ec9ca77117b298d0b 912 Pfam PF01966 HD domain 489 622 1.8E-13 T 14-10-2018 IPR006674 HD domain YP_2809 24c32cb4bd3f9a4ec9ca77117b298d0b 912 Gene3D G3DSA:3.30.70.260 833 909 3.7E-5 T 14-10-2018 YP_2809 24c32cb4bd3f9a4ec9ca77117b298d0b 912 Pfam PF01909 Nucleotidyltransferase domain 105 167 6.7E-7 T 14-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 YP_2809 24c32cb4bd3f9a4ec9ca77117b298d0b 912 SUPERFAMILY SSF109604 478 579 9.74E-14 T 14-10-2018 YP_2809 24c32cb4bd3f9a4ec9ca77117b298d0b 912 SUPERFAMILY SSF81891 450 669 3.24E-9 T 14-10-2018 YP_2809 24c32cb4bd3f9a4ec9ca77117b298d0b 912 SUPERFAMILY SSF81593 230 349 1.57E-10 T 14-10-2018 YP_2809 24c32cb4bd3f9a4ec9ca77117b298d0b 912 SMART SM00471 485 632 3.6E-11 T 14-10-2018 IPR003607 HD/PDEase domain YP_2809 24c32cb4bd3f9a4ec9ca77117b298d0b 912 PIRSF PIRSF006288 47 912 0.0 T 14-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 YP_2809 24c32cb4bd3f9a4ec9ca77117b298d0b 912 SUPERFAMILY SSF55021 726 785 5.73E-9 T 14-10-2018 YP_1017 e9c8da64f33813583679035a3e8b0653 263 SUPERFAMILY SSF50331 122 191 4.37E-19 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YP_1017 e9c8da64f33813583679035a3e8b0653 263 Gene3D G3DSA:2.40.50.100 183 253 4.2E-19 T 14-10-2018 YP_1017 e9c8da64f33813583679035a3e8b0653 263 Gene3D G3DSA:1.10.10.10 1 107 2.0E-34 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1017 e9c8da64f33813583679035a3e8b0653 263 Pfam PF03459 TOBE domain 124 188 2.7E-15 T 14-10-2018 IPR005116 Transport-associated OB, type 1 YP_1017 e9c8da64f33813583679035a3e8b0653 263 Pfam PF03459 TOBE domain 198 258 6.1E-12 T 14-10-2018 IPR005116 Transport-associated OB, type 1 YP_1017 e9c8da64f33813583679035a3e8b0653 263 PIRSF PIRSF005763 1 263 1.1E-94 T 14-10-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 YP_1017 e9c8da64f33813583679035a3e8b0653 263 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 122 191 3.1E-26 T 14-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 YP_1017 e9c8da64f33813583679035a3e8b0653 263 SUPERFAMILY SSF50331 171 259 5.48E-16 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YP_1017 e9c8da64f33813583679035a3e8b0653 263 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 83 2.5E-12 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_1017 e9c8da64f33813583679035a3e8b0653 263 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 16 112 6.8E-38 T 14-10-2018 IPR003725 Molybdenum-binding protein ModE, N-terminal YP_1017 e9c8da64f33813583679035a3e8b0653 263 Gene3D G3DSA:2.40.50.100 108 182 9.7E-24 T 14-10-2018 YP_1017 e9c8da64f33813583679035a3e8b0653 263 SUPERFAMILY SSF46785 2 103 7.62E-25 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0479 4cb519d9fa40aacdec15ae930d6ad079 947 Gene3D G3DSA:3.30.190.20 130 244 1.1E-244 T 14-10-2018 YP_0479 4cb519d9fa40aacdec15ae930d6ad079 947 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 4 925 0.0 T 14-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 YP_0479 4cb519d9fa40aacdec15ae930d6ad079 947 Gene3D G3DSA:1.10.8.280 287 403 1.1E-244 T 14-10-2018 YP_0479 4cb519d9fa40aacdec15ae930d6ad079 947 Gene3D G3DSA:1.20.1580.10 90 492 1.1E-244 T 14-10-2018 YP_0479 4cb519d9fa40aacdec15ae930d6ad079 947 ProSitePatterns PS00211 ABC transporters family signature. 830 844 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0479 4cb519d9fa40aacdec15ae930d6ad079 947 SUPERFAMILY SSF52540 1 569 1.64E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0479 4cb519d9fa40aacdec15ae930d6ad079 947 Gene3D G3DSA:1.20.1580.10 692 830 6.9E-138 T 14-10-2018 YP_0479 4cb519d9fa40aacdec15ae930d6ad079 947 SUPERFAMILY SSF52540 619 911 1.82E-51 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0479 4cb519d9fa40aacdec15ae930d6ad079 947 Gene3D G3DSA:3.40.50.300 6 595 1.1E-244 T 14-10-2018 YP_0479 4cb519d9fa40aacdec15ae930d6ad079 947 Gene3D G3DSA:3.40.50.300 617 936 6.9E-138 T 14-10-2018 YP_0479 4cb519d9fa40aacdec15ae930d6ad079 947 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0479 4cb519d9fa40aacdec15ae930d6ad079 947 Pfam PF00005 ABC transporter 623 860 1.7E-8 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0479 4cb519d9fa40aacdec15ae930d6ad079 947 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 940 22.946 T 14-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 YP_2262 9928f9cb9871a7a28ef12d91536300e8 320 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 140 154 - T 14-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_2262 9928f9cb9871a7a28ef12d91536300e8 320 Gene3D G3DSA:3.10.290.10 7 76 4.1E-16 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YP_2262 9928f9cb9871a7a28ef12d91536300e8 320 Pfam PF00849 RNA pseudouridylate synthase 102 249 2.2E-30 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_2262 9928f9cb9871a7a28ef12d91536300e8 320 Pfam PF01479 S4 domain 20 66 2.3E-9 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_2262 9928f9cb9871a7a28ef12d91536300e8 320 SUPERFAMILY SSF55174 19 70 2.21E-8 T 14-10-2018 YP_2262 9928f9cb9871a7a28ef12d91536300e8 320 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 16 314 2.6E-92 T 14-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_2262 9928f9cb9871a7a28ef12d91536300e8 320 SUPERFAMILY SSF55120 95 311 6.72E-64 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_2262 9928f9cb9871a7a28ef12d91536300e8 320 Gene3D G3DSA:3.30.2350.10 92 317 9.2E-84 T 14-10-2018 YP_2262 9928f9cb9871a7a28ef12d91536300e8 320 SMART SM00363 20 79 2.7E-7 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0187 1f8bdf9952098fc4a1c342d86194dff8 640 Gene3D G3DSA:3.40.50.300 6 274 1.6E-60 T 14-10-2018 YP_0187 1f8bdf9952098fc4a1c342d86194dff8 640 Pfam PF00005 ABC transporter 17 178 4.7E-24 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0187 1f8bdf9952098fc4a1c342d86194dff8 640 Gene3D G3DSA:3.40.50.300 276 539 1.3E-58 T 14-10-2018 YP_0187 1f8bdf9952098fc4a1c342d86194dff8 640 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0187 1f8bdf9952098fc4a1c342d86194dff8 640 SMART SM00382 337 506 1.4E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0187 1f8bdf9952098fc4a1c342d86194dff8 640 SMART SM00382 26 223 6.4E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0187 1f8bdf9952098fc4a1c342d86194dff8 640 Pfam PF12848 ABC transporter 217 297 1.2E-28 T 14-10-2018 IPR032781 ABC-transporter extension domain YP_0187 1f8bdf9952098fc4a1c342d86194dff8 640 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0187 1f8bdf9952098fc4a1c342d86194dff8 640 Pfam PF00005 ABC transporter 328 459 2.8E-26 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0187 1f8bdf9952098fc4a1c342d86194dff8 640 SUPERFAMILY SSF52540 294 517 7.96E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0187 1f8bdf9952098fc4a1c342d86194dff8 640 SUPERFAMILY SSF52540 2 255 3.31E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1269 1c82ff8bf59269a6ca4186a388551976 223 SUPERFAMILY SSF51569 3 216 3.04E-78 T 14-10-2018 YP_1269 1c82ff8bf59269a6ca4186a388551976 223 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 5 213 5.9E-83 T 14-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YP_1269 1c82ff8bf59269a6ca4186a388551976 223 Pfam PF01791 DeoC/LacD family aldolase 7 212 4.0E-18 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YP_1269 1c82ff8bf59269a6ca4186a388551976 223 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 3 217 34.796 T 14-10-2018 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 YP_1269 1c82ff8bf59269a6ca4186a388551976 223 Gene3D G3DSA:3.20.20.70 1 222 6.6E-92 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_1269 1c82ff8bf59269a6ca4186a388551976 223 PIRSF PIRSF001357 1 222 4.1E-72 T 14-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YP_1269 1c82ff8bf59269a6ca4186a388551976 223 SMART SM01133 4 215 4.3E-95 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YP_pCRY16 b34c86608db19aae59b45828b46d059c 341 Gene3D G3DSA:3.30.450.90 11 104 1.6E-33 T 14-10-2018 YP_pCRY16 b34c86608db19aae59b45828b46d059c 341 Gene3D G3DSA:3.40.50.300 105 339 5.1E-52 T 14-10-2018 YP_pCRY16 b34c86608db19aae59b45828b46d059c 341 Pfam PF00437 Type II/IV secretion system protein 19 279 6.1E-40 T 14-10-2018 IPR001482 Type II/IV secretion system protein YP_pCRY16 b34c86608db19aae59b45828b46d059c 341 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 19 327 1.4E-89 T 14-10-2018 IPR014155 Type IV secretion system protein VirB11 GO:0043684|GO:0044097 YP_pCRY16 b34c86608db19aae59b45828b46d059c 341 SUPERFAMILY SSF52540 16 319 4.76E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0942 01432d94d2a8fadd13ebaa917a91e3fe 284 ProSitePatterns PS00683 Rhodanese C-terminal signature. 260 270 - T 14-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 YP_0942 01432d94d2a8fadd13ebaa917a91e3fe 284 Gene3D G3DSA:3.40.250.10 152 276 1.5E-38 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily YP_0942 01432d94d2a8fadd13ebaa917a91e3fe 284 ProSitePatterns PS00380 Rhodanese signature 1. 43 54 - T 14-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 YP_0942 01432d94d2a8fadd13ebaa917a91e3fe 284 SMART SM00450 7 133 1.4E-24 T 14-10-2018 IPR001763 Rhodanese-like domain YP_0942 01432d94d2a8fadd13ebaa917a91e3fe 284 SMART SM00450 156 276 3.0E-19 T 14-10-2018 IPR001763 Rhodanese-like domain YP_0942 01432d94d2a8fadd13ebaa917a91e3fe 284 SUPERFAMILY SSF52821 1 152 3.4E-41 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily YP_0942 01432d94d2a8fadd13ebaa917a91e3fe 284 Pfam PF00581 Rhodanese-like domain 8 129 4.4E-17 T 14-10-2018 IPR001763 Rhodanese-like domain YP_0942 01432d94d2a8fadd13ebaa917a91e3fe 284 Pfam PF00581 Rhodanese-like domain 158 272 7.4E-12 T 14-10-2018 IPR001763 Rhodanese-like domain YP_0942 01432d94d2a8fadd13ebaa917a91e3fe 284 Gene3D G3DSA:3.40.250.10 2 150 9.6E-48 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily YP_0942 01432d94d2a8fadd13ebaa917a91e3fe 284 SUPERFAMILY SSF52821 159 279 3.8E-33 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily YP_1740 64172c7ed4d990d77e423d3508cdceb8 283 Pfam PF01471 Putative peptidoglycan binding domain 218 269 2.1E-9 T 14-10-2018 IPR002477 Peptidoglycan binding-like YP_1740 64172c7ed4d990d77e423d3508cdceb8 283 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 45 183 8.7E-27 T 14-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YP_1740 64172c7ed4d990d77e423d3508cdceb8 283 Gene3D G3DSA:1.10.101.10 197 280 9.5E-30 T 14-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 YP_1740 64172c7ed4d990d77e423d3508cdceb8 283 Gene3D G3DSA:3.40.80.10 46 196 1.7E-48 T 14-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YP_1740 64172c7ed4d990d77e423d3508cdceb8 283 SMART SM00644 36 182 6.2E-25 T 14-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YP_1740 64172c7ed4d990d77e423d3508cdceb8 283 SUPERFAMILY SSF47090 202 279 2.75E-22 T 14-10-2018 IPR036365 PGBD-like superfamily YP_1740 64172c7ed4d990d77e423d3508cdceb8 283 SUPERFAMILY SSF55846 28 198 6.28E-52 T 14-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YP_2913 a6298fefed244a782a307874b47ed061 577 SUPERFAMILY SSF81606 323 575 2.88E-10 T 14-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 YP_2913 a6298fefed244a782a307874b47ed061 577 Gene3D G3DSA:3.60.40.10 308 576 3.5E-9 T 14-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 YP_2913 a6298fefed244a782a307874b47ed061 577 Pfam PF13672 Protein phosphatase 2C 316 561 2.3E-56 T 14-10-2018 YP_4029 a9cce7d7037e16779cdf890fcf49d618 287 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 287 2.4E-111 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4029 a9cce7d7037e16779cdf890fcf49d618 287 Gene3D G3DSA:1.10.287.80 6 283 5.0E-112 T 14-10-2018 YP_4029 a9cce7d7037e16779cdf890fcf49d618 287 Gene3D G3DSA:3.40.1380.10 61 206 5.0E-112 T 14-10-2018 YP_4029 a9cce7d7037e16779cdf890fcf49d618 287 SUPERFAMILY SSF52943 2 287 2.62E-96 T 14-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4029 a9cce7d7037e16779cdf890fcf49d618 287 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 287 36.354 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4029 a9cce7d7037e16779cdf890fcf49d618 287 Pfam PF00231 ATP synthase 5 286 9.1E-96 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4029 a9cce7d7037e16779cdf890fcf49d618 287 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 273 286 - T 14-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4029 a9cce7d7037e16779cdf890fcf49d618 287 PRINTS PR00126 ATP synthase gamma subunit signature 265 286 3.4E-38 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4029 a9cce7d7037e16779cdf890fcf49d618 287 PRINTS PR00126 ATP synthase gamma subunit signature 234 253 3.4E-38 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4029 a9cce7d7037e16779cdf890fcf49d618 287 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 3.4E-38 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4029 a9cce7d7037e16779cdf890fcf49d618 287 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 3.4E-38 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_3898 c4071f2332530d9f110b4574a28831a3 145 SUPERFAMILY SSF69118 15 139 9.42E-34 T 14-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 YP_3898 c4071f2332530d9f110b4574a28831a3 145 Pfam PF02627 Carboxymuconolactone decarboxylase family 51 132 7.3E-23 T 14-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 YP_3898 c4071f2332530d9f110b4574a28831a3 145 Gene3D G3DSA:1.20.1290.10 18 142 7.0E-36 T 14-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 YP_3380 eb8dbaecac228547d883404fab9d9c00 568 Pfam PF01175 Urocanase Rossmann-like domain 146 354 6.4E-85 T 14-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YP_3380 eb8dbaecac228547d883404fab9d9c00 568 Hamap MF_00577 Urocanate hydratase [hutU]. 8 561 50.062 T 14-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YP_3380 eb8dbaecac228547d883404fab9d9c00 568 SUPERFAMILY SSF111326 12 560 7.98E-261 T 14-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YP_3380 eb8dbaecac228547d883404fab9d9c00 568 ProSitePatterns PS01233 Urocanase signature. 447 462 - T 14-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YP_3380 eb8dbaecac228547d883404fab9d9c00 568 Gene3D G3DSA:3.40.1770.10 22 547 2.1E-260 T 14-10-2018 YP_3380 eb8dbaecac228547d883404fab9d9c00 568 Pfam PF17391 Urocanase N-terminal domain 17 143 3.3E-62 T 14-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YP_3380 eb8dbaecac228547d883404fab9d9c00 568 TIGRFAM TIGR01228 hutU: urocanate hydratase 16 559 2.7E-303 T 14-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YP_3380 eb8dbaecac228547d883404fab9d9c00 568 PIRSF PIRSF001423 2 566 2.4E-293 T 14-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YP_3380 eb8dbaecac228547d883404fab9d9c00 568 Gene3D G3DSA:3.40.50.10730 147 354 2.1E-260 T 14-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YP_3380 eb8dbaecac228547d883404fab9d9c00 568 Pfam PF17392 Urocanase C-terminal domain 357 551 2.3E-92 T 14-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YP_4004 5162596b6f26793daca5a54167218025 366 SMART SM00480 17 362 1.7E-165 T 14-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 YP_4004 5162596b6f26793daca5a54167218025 366 PIRSF PIRSF000804 1 366 5.9E-116 T 14-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 YP_4004 5162596b6f26793daca5a54167218025 366 Gene3D G3DSA:3.10.150.10 248 366 1.6E-41 T 14-10-2018 YP_4004 5162596b6f26793daca5a54167218025 366 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 245 365 6.9E-44 T 14-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 YP_4004 5162596b6f26793daca5a54167218025 366 SUPERFAMILY SSF55979 125 244 3.62E-31 T 14-10-2018 YP_4004 5162596b6f26793daca5a54167218025 366 Gene3D G3DSA:3.10.150.10 1 123 2.2E-42 T 14-10-2018 YP_4004 5162596b6f26793daca5a54167218025 366 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 8.1E-38 T 14-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 YP_4004 5162596b6f26793daca5a54167218025 366 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 2.1E-111 T 14-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 YP_4004 5162596b6f26793daca5a54167218025 366 SUPERFAMILY SSF55979 245 366 3.14E-37 T 14-10-2018 YP_4004 5162596b6f26793daca5a54167218025 366 Pfam PF02767 DNA polymerase III beta subunit, central domain 129 243 3.1E-40 T 14-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 YP_4004 5162596b6f26793daca5a54167218025 366 Gene3D G3DSA:3.10.150.10 124 247 4.0E-40 T 14-10-2018 YP_4004 5162596b6f26793daca5a54167218025 366 SUPERFAMILY SSF55979 1 121 1.77E-26 T 14-10-2018 YP_1582 4fb6aea6c9ad9b0e23a37ef83aa6eeb6 690 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 35 226 1.9E-23 T 14-10-2018 IPR001303 Class II aldolase/adducin N-terminal YP_1582 4fb6aea6c9ad9b0e23a37ef83aa6eeb6 690 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 448 683 5.1E-42 T 14-10-2018 YP_1582 4fb6aea6c9ad9b0e23a37ef83aa6eeb6 690 SUPERFAMILY SSF51735 437 687 2.91E-57 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1582 4fb6aea6c9ad9b0e23a37ef83aa6eeb6 690 Gene3D G3DSA:3.40.50.720 421 688 1.6E-56 T 14-10-2018 YP_1582 4fb6aea6c9ad9b0e23a37ef83aa6eeb6 690 SMART SM01007 30 229 2.7E-30 T 14-10-2018 IPR001303 Class II aldolase/adducin N-terminal YP_1582 4fb6aea6c9ad9b0e23a37ef83aa6eeb6 690 SUPERFAMILY SSF53639 28 230 1.53E-33 T 14-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YP_1582 4fb6aea6c9ad9b0e23a37ef83aa6eeb6 690 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 575 603 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YP_1582 4fb6aea6c9ad9b0e23a37ef83aa6eeb6 690 Gene3D G3DSA:3.40.225.10 27 234 6.9E-54 T 14-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YP_1582 4fb6aea6c9ad9b0e23a37ef83aa6eeb6 690 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 588 607 1.2E-18 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1582 4fb6aea6c9ad9b0e23a37ef83aa6eeb6 690 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 514 525 1.2E-18 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1582 4fb6aea6c9ad9b0e23a37ef83aa6eeb6 690 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 609 626 1.2E-18 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1582 4fb6aea6c9ad9b0e23a37ef83aa6eeb6 690 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 443 460 1.2E-18 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_3736 24e07af5c6c60793fffe4caf03fa45a9 555 Pfam PF12848 ABC transporter 230 306 2.9E-12 T 14-10-2018 IPR032781 ABC-transporter extension domain YP_3736 24e07af5c6c60793fffe4caf03fa45a9 555 Gene3D G3DSA:3.40.50.300 286 555 1.1E-76 T 14-10-2018 YP_3736 24e07af5c6c60793fffe4caf03fa45a9 555 SMART SM00382 348 522 2.5E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3736 24e07af5c6c60793fffe4caf03fa45a9 555 SMART SM00382 31 236 3.1E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3736 24e07af5c6c60793fffe4caf03fa45a9 555 SUPERFAMILY SSF52540 303 525 1.75E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3736 24e07af5c6c60793fffe4caf03fa45a9 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 553 5.6E-294 T 14-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 YP_3736 24e07af5c6c60793fffe4caf03fa45a9 555 Pfam PF00005 ABC transporter 22 191 1.2E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3736 24e07af5c6c60793fffe4caf03fa45a9 555 Pfam PF00005 ABC transporter 340 473 1.1E-22 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3736 24e07af5c6c60793fffe4caf03fa45a9 555 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3736 24e07af5c6c60793fffe4caf03fa45a9 555 Gene3D G3DSA:3.40.50.300 1 285 2.2E-88 T 14-10-2018 YP_3736 24e07af5c6c60793fffe4caf03fa45a9 555 SUPERFAMILY SSF52540 11 243 4.15E-49 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0742 0ba74f5232f7522de32089001bf317e0 615 SUPERFAMILY SSF82866 410 606 1.15E-41 T 14-10-2018 YP_0742 0ba74f5232f7522de32089001bf317e0 615 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 3 615 48.696 T 14-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 YP_0742 0ba74f5232f7522de32089001bf317e0 615 Pfam PF02355 Protein export membrane protein 433 601 6.6E-16 T 14-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YP_0742 0ba74f5232f7522de32089001bf317e0 615 Gene3D G3DSA:3.30.1360.200 278 431 1.8E-49 T 14-10-2018 YP_0742 0ba74f5232f7522de32089001bf317e0 615 Gene3D G3DSA:3.30.70.3400 222 437 1.8E-49 T 14-10-2018 YP_0742 0ba74f5232f7522de32089001bf317e0 615 Pfam PF13721 SecD export protein N-terminal TM region 2 103 7.2E-37 T 14-10-2018 IPR027398 SecD export protein N-terminal TM domain YP_0742 0ba74f5232f7522de32089001bf317e0 615 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 123 601 2.1E-151 T 14-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 YP_0742 0ba74f5232f7522de32089001bf317e0 615 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 345 594 4.1E-84 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YP_0742 0ba74f5232f7522de32089001bf317e0 615 Pfam PF07549 SecD/SecF GG Motif 120 140 5.1E-6 T 14-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YP_1085 7dcea70c33e0a613d5404403a4d435cb 677 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 529 652 3.1E-46 T 14-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 YP_1085 7dcea70c33e0a613d5404403a4d435cb 677 Pfam PF00367 phosphotransferase system, EIIB 425 457 4.9E-12 T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 YP_1085 7dcea70c33e0a613d5404403a4d435cb 677 SUPERFAMILY SSF55604 422 495 1.44E-17 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 YP_1085 7dcea70c33e0a613d5404403a4d435cb 677 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 384 482 1.9E-20 T 14-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 YP_1085 7dcea70c33e0a613d5404403a4d435cb 677 Pfam PF02378 Phosphotransferase system, EIIC 12 324 4.9E-75 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 YP_1085 7dcea70c33e0a613d5404403a4d435cb 677 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 591 603 - T 14-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 YP_1085 7dcea70c33e0a613d5404403a4d435cb 677 Gene3D G3DSA:3.30.1360.60 417 498 4.4E-23 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 YP_1085 7dcea70c33e0a613d5404403a4d435cb 677 Gene3D G3DSA:2.70.70.10 517 676 4.7E-53 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_1085 7dcea70c33e0a613d5404403a4d435cb 677 SUPERFAMILY SSF51261 521 672 1.34E-50 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_1085 7dcea70c33e0a613d5404403a4d435cb 677 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 3 493 9.5E-203 T 14-10-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 YP_1085 7dcea70c33e0a613d5404403a4d435cb 677 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 435 452 - T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 YP_1085 7dcea70c33e0a613d5404403a4d435cb 677 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 529 649 3.8E-46 T 14-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 YP_3605 155582da372547ed0901f453c427fd77 478 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 356 371 6.6E-19 T 14-10-2018 YP_3605 155582da372547ed0901f453c427fd77 478 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 231 246 6.6E-19 T 14-10-2018 YP_3605 155582da372547ed0901f453c427fd77 478 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 371 387 6.6E-19 T 14-10-2018 YP_3605 155582da372547ed0901f453c427fd77 478 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 77 99 6.6E-19 T 14-10-2018 YP_3605 155582da372547ed0901f453c427fd77 478 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 370 383 - T 14-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 YP_3605 155582da372547ed0901f453c427fd77 478 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 77 466 5.1E-140 T 14-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 YP_3605 155582da372547ed0901f453c427fd77 478 Pfam PF01494 FAD binding domain 77 421 2.4E-29 T 14-10-2018 IPR002938 FAD-binding domain GO:0071949 YP_3605 155582da372547ed0901f453c427fd77 478 Gene3D G3DSA:3.50.50.60 73 299 4.4E-81 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3605 155582da372547ed0901f453c427fd77 478 Gene3D G3DSA:3.50.50.60 331 478 1.4E-50 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3605 155582da372547ed0901f453c427fd77 478 SUPERFAMILY SSF51905 76 460 2.77E-61 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 PRINTS PR00301 70kDa heat shock protein signature 358 374 1.6E-52 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 PRINTS PR00301 70kDa heat shock protein signature 181 201 1.6E-52 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 PRINTS PR00301 70kDa heat shock protein signature 20 33 1.6E-52 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 PRINTS PR00301 70kDa heat shock protein signature 495 511 1.6E-52 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 PRINTS PR00301 70kDa heat shock protein signature 389 409 1.6E-52 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 PRINTS PR00301 70kDa heat shock protein signature 240 250 1.6E-52 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 PRINTS PR00301 70kDa heat shock protein signature 414 433 1.6E-52 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 Pfam PF00012 Hsp70 protein 74 629 7.2E-185 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 SUPERFAMILY SSF100920 413 563 2.88E-51 T 14-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 Gene3D G3DSA:3.30.420.40 73 403 9.1E-102 T 14-10-2018 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 234 247 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 Gene3D G3DSA:2.60.34.10 408 549 1.4E-50 T 14-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 71 644 1.3E-257 T 14-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 SUPERFAMILY SSF100934 533 644 4.9E-37 T 14-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 SUPERFAMILY SSF53067 229 406 3.6E-50 T 14-10-2018 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 645 44.248 T 14-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 Gene3D G3DSA:3.90.640.10 267 340 9.1E-102 T 14-10-2018 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 361 375 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 SUPERFAMILY SSF53067 20 225 5.83E-47 T 14-10-2018 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 Gene3D G3DSA:3.30.420.40 223 390 9.1E-102 T 14-10-2018 YP_2563 ccad49ba8eaa74233a2dd29c15e55c14 645 Gene3D G3DSA:1.20.1270.10 550 644 2.0E-28 T 14-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 YP_1622 5143178647af81c76bff67b2213baa99 454 Pfam PF03315 Serine dehydratase beta chain 3 155 1.3E-55 T 14-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 YP_1622 5143178647af81c76bff67b2213baa99 454 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 1.1E-223 T 14-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 YP_1622 5143178647af81c76bff67b2213baa99 454 Pfam PF03313 Serine dehydratase alpha chain 184 448 7.8E-96 T 14-10-2018 IPR005130 Serine dehydratase-like, alpha subunit YP_1622 5143178647af81c76bff67b2213baa99 454 SUPERFAMILY SSF143548 16 157 2.33E-45 T 14-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 YP_1622 5143178647af81c76bff67b2213baa99 454 Gene3D G3DSA:3.30.1330.90 10 159 1.4E-51 T 14-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 YP_1915 e2cca43741e6a7a51eaf1f46c801f0ce 250 SUPERFAMILY SSF53067 23 125 4.53E-30 T 14-10-2018 YP_1915 e2cca43741e6a7a51eaf1f46c801f0ce 250 SUPERFAMILY SSF53067 128 237 4.92E-28 T 14-10-2018 YP_1915 e2cca43741e6a7a51eaf1f46c801f0ce 250 Gene3D G3DSA:3.30.420.40 114 208 6.9E-83 T 14-10-2018 YP_1915 e2cca43741e6a7a51eaf1f46c801f0ce 250 Gene3D G3DSA:3.30.420.40 23 242 6.9E-83 T 14-10-2018 YP_1915 e2cca43741e6a7a51eaf1f46c801f0ce 250 Pfam PF00814 Glycoprotease family 48 151 1.9E-28 T 14-10-2018 IPR000905 Gcp-like domain YP_1915 e2cca43741e6a7a51eaf1f46c801f0ce 250 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 23 239 2.2E-67 T 14-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 YP_0043 5df98b44024c022b07b0817928b6b694 207 Pfam PF03458 UPF0126 domain 91 164 7.1E-21 T 14-10-2018 IPR005115 Uncharacterised domain UPF0126 YP_0043 5df98b44024c022b07b0817928b6b694 207 Pfam PF03458 UPF0126 domain 5 79 4.9E-19 T 14-10-2018 IPR005115 Uncharacterised domain UPF0126 YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 SUPERFAMILY SSF56712 2 609 1.27E-188 T 14-10-2018 IPR023405 DNA topoisomerase, type IA, core domain YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 318 333 - T 14-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 Pfam PF01751 Toprim domain 4 136 1.8E-18 T 14-10-2018 IPR006171 TOPRIM domain YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 Gene3D G3DSA:2.70.20.10 218 489 9.0E-174 T 14-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 Gene3D G3DSA:3.40.50.140 2 157 3.6E-63 T 14-10-2018 YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 SMART SM00437 281 559 1.2E-102 T 14-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 Gene3D G3DSA:1.10.290.10 290 417 9.0E-174 T 14-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 SMART SM00436 129 224 6.8E-36 T 14-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 Gene3D G3DSA:1.10.460.10 163 603 9.0E-174 T 14-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 194 212 3.8E-25 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 99 112 3.8E-25 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 522 536 3.8E-25 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 324 333 3.8E-25 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 403 419 3.8E-25 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 Pfam PF01131 DNA topoisomerase 159 594 1.3E-109 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 631 2.8E-278 T 14-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 SMART SM00493 2 125 5.6E-32 T 14-10-2018 IPR006171 TOPRIM domain YP_1965 77d7a28c153e699bce47eaa7b1b93096 642 Hamap MF_00953 DNA topoisomerase 3 [topB]. 2 642 65.947 T 14-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 YP_2501 149f815cc33abc0374dc5c469f5a1f4b 248 SUPERFAMILY SSF102705 2 247 8.24E-83 T 14-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily YP_2501 149f815cc33abc0374dc5c469f5a1f4b 248 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 2 247 8.4E-70 T 14-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 YP_2501 149f815cc33abc0374dc5c469f5a1f4b 248 Gene3D G3DSA:3.40.1390.30 15 233 3.3E-86 T 14-10-2018 YP_2501 149f815cc33abc0374dc5c469f5a1f4b 248 Gene3D G3DSA:3.40.1390.30 98 219 3.3E-86 T 14-10-2018 YP_2501 149f815cc33abc0374dc5c469f5a1f4b 248 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 8 234 8.0E-57 T 14-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 YP_1705 dd15dfd003bbd7f7b60c8893c5dd4e21 482 Gene3D G3DSA:1.10.10.10 10 103 4.9E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1705 dd15dfd003bbd7f7b60c8893c5dd4e21 482 SMART SM00345 16 75 5.9E-16 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_1705 dd15dfd003bbd7f7b60c8893c5dd4e21 482 SUPERFAMILY SSF53383 69 477 3.4E-92 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_1705 dd15dfd003bbd7f7b60c8893c5dd4e21 482 Gene3D G3DSA:3.40.640.10 150 368 4.5E-102 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_1705 dd15dfd003bbd7f7b60c8893c5dd4e21 482 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 4.4E-14 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_1705 dd15dfd003bbd7f7b60c8893c5dd4e21 482 Gene3D G3DSA:3.90.1150.10 105 474 4.5E-102 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_1705 dd15dfd003bbd7f7b60c8893c5dd4e21 482 SUPERFAMILY SSF46785 10 79 5.45E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1705 dd15dfd003bbd7f7b60c8893c5dd4e21 482 Pfam PF00155 Aminotransferase class I and II 155 455 3.2E-28 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YP_3562 2413967b98100f874de3237a587e8924 106 Gene3D G3DSA:1.10.225.20 2 96 9.4E-30 T 14-10-2018 YP_3562 2413967b98100f874de3237a587e8924 106 Pfam PF12977 Domain of Unknown Function with PDB structure (DUF3861) 4 95 1.3E-34 T 14-10-2018 IPR024476 Protein of unknown function DUF3861 YP_2952 2f6d5fae357e4271af25c554008d5de7 460 SUPERFAMILY SSF54060 323 426 2.41E-23 T 14-10-2018 YP_2952 2f6d5fae357e4271af25c554008d5de7 460 PIRSF PIRSF011452 1 460 5.3E-217 T 14-10-2018 IPR016583 Uncharacterised conserved protein UCP011452, HNH endonuclease domain-type YP_2083 484a78e4a7a371ab2c233afada52da1a 491 PRINTS PR00113 Alkaline phosphatase signature 141 156 4.4E-47 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 YP_2083 484a78e4a7a371ab2c233afada52da1a 491 PRINTS PR00113 Alkaline phosphatase signature 241 251 4.4E-47 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 YP_2083 484a78e4a7a371ab2c233afada52da1a 491 PRINTS PR00113 Alkaline phosphatase signature 340 369 4.4E-47 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 YP_2083 484a78e4a7a371ab2c233afada52da1a 491 PRINTS PR00113 Alkaline phosphatase signature 178 198 4.4E-47 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 YP_2083 484a78e4a7a371ab2c233afada52da1a 491 PRINTS PR00113 Alkaline phosphatase signature 84 104 4.4E-47 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 YP_2083 484a78e4a7a371ab2c233afada52da1a 491 SMART SM00098 85 491 5.1E-189 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 YP_2083 484a78e4a7a371ab2c233afada52da1a 491 Gene3D G3DSA:3.40.720.10 45 491 5.2E-146 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YP_2083 484a78e4a7a371ab2c233afada52da1a 491 SUPERFAMILY SSF53649 57 490 9.16E-132 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YP_2083 484a78e4a7a371ab2c233afada52da1a 491 ProSitePatterns PS00123 Alkaline phosphatase active site. 141 149 - T 14-10-2018 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 YP_2083 484a78e4a7a371ab2c233afada52da1a 491 Pfam PF00245 Alkaline phosphatase 85 450 5.2E-118 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 YP_0039 01fc5306585b2b46f6298e05c1e8fb74 702 SUPERFAMILY SSF109604 3 190 2.39E-75 T 14-10-2018 YP_0039 01fc5306585b2b46f6298e05c1e8fb74 702 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 698 1.2E-286 T 14-10-2018 IPR004811 RelA/SpoT family GO:0015969 YP_0039 01fc5306585b2b46f6298e05c1e8fb74 702 Pfam PF02824 TGS domain 388 447 2.2E-20 T 14-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 YP_0039 01fc5306585b2b46f6298e05c1e8fb74 702 Gene3D G3DSA:1.10.3210.10 3 190 1.0E-80 T 14-10-2018 YP_0039 01fc5306585b2b46f6298e05c1e8fb74 702 SUPERFAMILY SSF55021 629 699 4.4E-5 T 14-10-2018 YP_0039 01fc5306585b2b46f6298e05c1e8fb74 702 Pfam PF04607 Region found in RelA / SpoT proteins 235 345 1.4E-35 T 14-10-2018 IPR007685 RelA/SpoT GO:0015969 YP_0039 01fc5306585b2b46f6298e05c1e8fb74 702 SMART SM00954 235 345 8.8E-62 T 14-10-2018 IPR007685 RelA/SpoT GO:0015969 YP_0039 01fc5306585b2b46f6298e05c1e8fb74 702 SUPERFAMILY SSF81271 375 447 3.92E-21 T 14-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 YP_0039 01fc5306585b2b46f6298e05c1e8fb74 702 Pfam PF13328 HD domain 26 175 4.1E-53 T 14-10-2018 IPR003607 HD/PDEase domain YP_0039 01fc5306585b2b46f6298e05c1e8fb74 702 SUPERFAMILY SSF81301 180 392 4.25E-62 T 14-10-2018 YP_0039 01fc5306585b2b46f6298e05c1e8fb74 702 SMART SM00471 41 153 1.3E-11 T 14-10-2018 IPR003607 HD/PDEase domain YP_0039 01fc5306585b2b46f6298e05c1e8fb74 702 Pfam PF13291 ACT domain 622 699 2.0E-15 T 14-10-2018 IPR002912 ACT domain YP_0039 01fc5306585b2b46f6298e05c1e8fb74 702 Gene3D G3DSA:3.30.460.10 193 325 5.8E-48 T 14-10-2018 YP_0039 01fc5306585b2b46f6298e05c1e8fb74 702 Gene3D G3DSA:3.30.70.260 623 702 2.7E-13 T 14-10-2018 YP_0039 01fc5306585b2b46f6298e05c1e8fb74 702 Gene3D G3DSA:3.10.20.30 381 455 7.1E-29 T 14-10-2018 IPR012675 Beta-grasp domain superfamily YP_1776 8aa5070f63b096ca6d216896f394728b 170 Pfam PF01638 HxlR-like helix-turn-helix 73 160 7.4E-28 T 14-10-2018 IPR002577 Helix-turn-helix, HxlR type YP_1776 8aa5070f63b096ca6d216896f394728b 170 SUPERFAMILY SSF46785 58 163 2.08E-30 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1776 8aa5070f63b096ca6d216896f394728b 170 Gene3D G3DSA:1.10.10.10 47 169 1.2E-38 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0602 ce1f0531b0461daae79cee8f31b04ce2 468 SUPERFAMILY SSF56954 2 462 3.79E-104 T 14-10-2018 YP_0602 ce1f0531b0461daae79cee8f31b04ce2 468 Pfam PF02321 Outer membrane efflux protein 280 459 1.7E-26 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 YP_0602 ce1f0531b0461daae79cee8f31b04ce2 468 Pfam PF02321 Outer membrane efflux protein 60 250 2.0E-26 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 YP_0602 ce1f0531b0461daae79cee8f31b04ce2 468 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 12 461 4.2E-112 T 14-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 YP_0602 ce1f0531b0461daae79cee8f31b04ce2 468 Gene3D G3DSA:2.20.200.10 96 350 3.8E-132 T 14-10-2018 YP_0602 ce1f0531b0461daae79cee8f31b04ce2 468 Gene3D G3DSA:1.20.1600.10 50 461 3.8E-132 T 14-10-2018 YP_1569 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 PRINTS PR00955 Flagellar motor switch protein FliM signature 113 132 2.3E-30 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 YP_1569 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 PRINTS PR00955 Flagellar motor switch protein FliM signature 3 16 2.3E-30 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 YP_1569 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 PRINTS PR00955 Flagellar motor switch protein FliM signature 212 230 2.3E-30 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 YP_1569 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 PRINTS PR00955 Flagellar motor switch protein FliM signature 88 104 2.3E-30 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 YP_1569 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 Gene3D G3DSA:3.40.1550.10 43 232 6.0E-56 T 14-10-2018 IPR028976 CheC-like superfamily YP_1569 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 PIRSF PIRSF002888 2 330 3.5E-93 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 YP_1569 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 252 320 9.0E-15 T 14-10-2018 IPR001543 Surface presentation of antigen (SpoA) YP_1569 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 Pfam PF02154 Flagellar motor switch protein FliM 37 230 3.0E-74 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 YP_1569 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 SUPERFAMILY SSF101801 249 322 2.09E-11 T 14-10-2018 IPR036429 SpoA-like superfamily YP_1569 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 SUPERFAMILY SSF103039 48 230 9.94E-20 T 14-10-2018 IPR028976 CheC-like superfamily YP_1569 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 4 320 9.0E-109 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 YP_0436 578c28c49bfbe5f51698b7dc481ba795 279 Gene3D G3DSA:3.40.50.1980 147 279 6.0E-54 T 14-10-2018 YP_0436 578c28c49bfbe5f51698b7dc481ba795 279 Gene3D G3DSA:3.40.50.1980 25 146 2.0E-44 T 14-10-2018 YP_0436 578c28c49bfbe5f51698b7dc481ba795 279 SUPERFAMILY SSF53807 26 274 3.1E-49 T 14-10-2018 YP_0436 578c28c49bfbe5f51698b7dc481ba795 279 Pfam PF01497 Periplasmic binding protein 29 253 7.5E-32 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain YP_0022 eda11f003f4126d3c5c50893e082943f 459 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 10 459 7.8E-219 T 14-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 YP_0022 eda11f003f4126d3c5c50893e082943f 459 Gene3D G3DSA:3.80.30.20 3 365 2.9E-138 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe YP_0022 eda11f003f4126d3c5c50893e082943f 459 Pfam PF06969 HemN C-terminal domain 366 433 1.6E-11 T 14-10-2018 IPR010723 HemN, C-terminal YP_0022 eda11f003f4126d3c5c50893e082943f 459 SUPERFAMILY SSF102114 8 446 8.11E-146 T 14-10-2018 YP_0022 eda11f003f4126d3c5c50893e082943f 459 Gene3D G3DSA:1.10.10.920 366 459 2.4E-36 T 14-10-2018 YP_0022 eda11f003f4126d3c5c50893e082943f 459 SMART SM00729 54 274 3.7E-54 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 YP_0022 eda11f003f4126d3c5c50893e082943f 459 Pfam PF04055 Radical SAM superfamily 59 228 3.1E-16 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YP_0022 eda11f003f4126d3c5c50893e082943f 459 PIRSF PIRSF000167 5 456 6.2E-174 T 14-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 YP_3632 60e68760b7314a5bae42de853d152172 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 1.2E-5 T 14-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_3632 60e68760b7314a5bae42de853d152172 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 14-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_3632 60e68760b7314a5bae42de853d152172 360 Pfam PF00953 Glycosyl transferase family 4 99 284 1.1E-36 T 14-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 YP_3632 60e68760b7314a5bae42de853d152172 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 14-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_3632 60e68760b7314a5bae42de853d152172 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 360 1.5E-159 T 14-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_3632 60e68760b7314a5bae42de853d152172 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 26.007 T 14-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_2856 4c2fd3c3d4f590e118e45d3d42428c44 211 Pfam PF01323 DSBA-like thioredoxin domain 9 185 1.2E-6 T 14-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 YP_2856 4c2fd3c3d4f590e118e45d3d42428c44 211 Gene3D G3DSA:3.40.30.10 3 211 1.6E-47 T 14-10-2018 YP_2856 4c2fd3c3d4f590e118e45d3d42428c44 211 SUPERFAMILY SSF52833 4 192 6.1E-28 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_0223 7cd6b047f5dcf98077b20479ca32345f 117 SUPERFAMILY SSF53137 3 115 2.62E-53 T 14-10-2018 YP_0223 7cd6b047f5dcf98077b20479ca32345f 117 Gene3D G3DSA:3.30.420.100 1 117 1.7E-46 T 14-10-2018 YP_0223 7cd6b047f5dcf98077b20479ca32345f 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 26.23 T 14-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0223 7cd6b047f5dcf98077b20479ca32345f 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 5.5E-44 T 14-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0223 7cd6b047f5dcf98077b20479ca32345f 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 8.4E-46 T 14-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_2843 36f064ec6082ada08017705c09492430 145 Gene3D G3DSA:3.30.700.10 22 137 1.1E-36 T 14-10-2018 YP_2843 36f064ec6082ada08017705c09492430 145 SUPERFAMILY SSF54523 35 138 2.56E-36 T 14-10-2018 YP_2843 36f064ec6082ada08017705c09492430 145 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 27 1.8E-8 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site YP_2843 36f064ec6082ada08017705c09492430 145 Pfam PF08334 Type II secretion system (T2SS), protein G 32 137 6.9E-36 T 14-10-2018 IPR013545 Type II secretion system protein G YP_2843 36f064ec6082ada08017705c09492430 145 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site YP_2843 36f064ec6082ada08017705c09492430 145 PRINTS PR00813 Bacterial general secretion pathway protein G signature 8 33 8.0E-22 T 14-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 YP_2843 36f064ec6082ada08017705c09492430 145 PRINTS PR00813 Bacterial general secretion pathway protein G signature 44 62 8.0E-22 T 14-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 YP_2843 36f064ec6082ada08017705c09492430 145 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 28 8.6E-8 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site YP_2843 36f064ec6082ada08017705c09492430 145 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 7 137 1.8E-60 T 14-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 YP_1416 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 SMART SM01091 441 520 4.8E-26 T 14-10-2018 IPR005170 Transporter-associated domain YP_1416 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 SUPERFAMILY SSF54631 292 426 5.43E-25 T 14-10-2018 YP_1416 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 Pfam PF00571 CBS domain 375 424 2.9E-6 T 14-10-2018 IPR000644 CBS domain YP_1416 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 Pfam PF00571 CBS domain 304 360 0.0012 T 14-10-2018 IPR000644 CBS domain YP_1416 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 Pfam PF03741 Integral membrane protein TerC family 15 203 1.3E-49 T 14-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 YP_1416 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 Gene3D G3DSA:3.30.465.10 437 520 8.6E-20 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YP_1416 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 Gene3D G3DSA:3.10.580.10 285 436 5.4E-40 T 14-10-2018 YP_1416 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 Pfam PF03471 Transporter associated domain 442 519 5.0E-18 T 14-10-2018 IPR005170 Transporter-associated domain YP_1416 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 SUPERFAMILY SSF56176 439 521 6.82E-21 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YP_3880 98824e785c47f5a7d2c241aae8d17aaf 331 Gene3D G3DSA:2.40.10.340 122 266 3.9E-35 T 14-10-2018 YP_3880 98824e785c47f5a7d2c241aae8d17aaf 331 Pfam PF04085 rod shape-determining protein MreC 123 269 1.3E-37 T 14-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 YP_3880 98824e785c47f5a7d2c241aae8d17aaf 331 PIRSF PIRSF038471 2 284 2.9E-74 T 14-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 YP_3880 98824e785c47f5a7d2c241aae8d17aaf 331 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 1 276 1.2E-113 T 14-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 YP_3880 98824e785c47f5a7d2c241aae8d17aaf 331 Gene3D G3DSA:2.40.10.350 180 257 3.9E-35 T 14-10-2018 YP_1138 6e89179a8c5de26cfeed02f74f31a2aa 284 Gene3D G3DSA:3.40.50.10490 109 284 6.1E-33 T 14-10-2018 YP_1138 6e89179a8c5de26cfeed02f74f31a2aa 284 Pfam PF01418 Helix-turn-helix domain, rpiR family 10 75 1.2E-9 T 14-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 YP_1138 6e89179a8c5de26cfeed02f74f31a2aa 284 Gene3D G3DSA:1.10.10.10 5 83 7.4E-16 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1138 6e89179a8c5de26cfeed02f74f31a2aa 284 Pfam PF01380 SIS domain 140 266 5.5E-21 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YP_1138 6e89179a8c5de26cfeed02f74f31a2aa 284 SUPERFAMILY SSF46689 9 85 4.84E-18 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_1138 6e89179a8c5de26cfeed02f74f31a2aa 284 SUPERFAMILY SSF53697 109 277 1.36E-26 T 14-10-2018 YP_3686 9625ad16acb170363cc8ac6d410e55fe 335 SUPERFAMILY SSF53659 11 332 1.6E-112 T 14-10-2018 YP_3686 9625ad16acb170363cc8ac6d410e55fe 335 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 9 333 36.372 T 14-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 YP_3686 9625ad16acb170363cc8ac6d410e55fe 335 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 11 329 5.5E-129 T 14-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 YP_3686 9625ad16acb170363cc8ac6d410e55fe 335 Gene3D G3DSA:3.40.718.10 2 335 1.1E-135 T 14-10-2018 YP_3686 9625ad16acb170363cc8ac6d410e55fe 335 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 39 326 2.8E-107 T 14-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 YP_0270 00e46d914030713f81c48e646172aa9e 865 Gene3D G3DSA:1.25.40.310 1 161 2.5E-74 T 14-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 YP_0270 00e46d914030713f81c48e646172aa9e 865 SUPERFAMILY SSF52016 163 372 1.12E-72 T 14-10-2018 YP_0270 00e46d914030713f81c48e646172aa9e 865 ProSitePatterns PS01244 Aconitase family signature 2. 761 774 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 YP_0270 00e46d914030713f81c48e646172aa9e 865 Gene3D G3DSA:3.30.499.10 683 865 1.1E-75 T 14-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 YP_0270 00e46d914030713f81c48e646172aa9e 865 Gene3D G3DSA:3.40.1060.10 385 681 1.0E-151 T 14-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 YP_0270 00e46d914030713f81c48e646172aa9e 865 Pfam PF00330 Aconitase family (aconitate hydratase) 472 818 1.3E-39 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_0270 00e46d914030713f81c48e646172aa9e 865 Gene3D G3DSA:3.30.499.10 402 529 1.0E-151 T 14-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 YP_0270 00e46d914030713f81c48e646172aa9e 865 SUPERFAMILY SSF74778 2 160 6.54E-68 T 14-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 YP_0270 00e46d914030713f81c48e646172aa9e 865 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 9.7E-99 T 14-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 YP_0270 00e46d914030713f81c48e646172aa9e 865 ProSitePatterns PS00450 Aconitase family signature 1. 702 719 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 YP_0270 00e46d914030713f81c48e646172aa9e 865 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 854 0.0 T 14-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 YP_0270 00e46d914030713f81c48e646172aa9e 865 SUPERFAMILY SSF53732 379 859 2.09E-150 T 14-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 YP_0270 00e46d914030713f81c48e646172aa9e 865 Pfam PF11791 Aconitate B N-terminal domain 4 156 2.4E-67 T 14-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 YP_0270 00e46d914030713f81c48e646172aa9e 865 PIRSF PIRSF036687 1 859 0.0 T 14-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 YP_0270 00e46d914030713f81c48e646172aa9e 865 Gene3D G3DSA:3.20.19.10 162 361 2.0E-81 T 14-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 YP_2193 7e35f613360c7915d9abdf71add3c13d 138 Hamap MF_01936 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [menI]. 1 136 42.445 T 14-10-2018 IPR030863 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, MenI GO:0009234|GO:0061522 KEGG: 00130+3.1.2.28|MetaCyc: PWY-5837 YP_2193 7e35f613360c7915d9abdf71add3c13d 138 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 20 134 8.2E-46 T 14-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 YP_2193 7e35f613360c7915d9abdf71add3c13d 138 Gene3D G3DSA:3.10.129.10 1 138 3.4E-59 T 14-10-2018 YP_2193 7e35f613360c7915d9abdf71add3c13d 138 SUPERFAMILY SSF54637 20 136 7.47E-31 T 14-10-2018 IPR029069 HotDog domain superfamily YP_2193 7e35f613360c7915d9abdf71add3c13d 138 Pfam PF03061 Thioesterase superfamily 50 127 3.0E-16 T 14-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 YP_1381 4fcff69db3ae0f4c03f11c5232ae0dd1 587 SUPERFAMILY SSF52540 354 579 7.4E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1381 4fcff69db3ae0f4c03f11c5232ae0dd1 587 Gene3D G3DSA:3.40.50.300 338 585 3.9E-56 T 14-10-2018 YP_1381 4fcff69db3ae0f4c03f11c5232ae0dd1 587 SMART SM00382 400 569 3.8E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1381 4fcff69db3ae0f4c03f11c5232ae0dd1 587 SMART SM00382 82 284 6.5E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1381 4fcff69db3ae0f4c03f11c5232ae0dd1 587 Gene3D G3DSA:3.40.50.300 55 335 7.2E-57 T 14-10-2018 YP_1381 4fcff69db3ae0f4c03f11c5232ae0dd1 587 Pfam PF12848 ABC transporter 280 365 2.0E-20 T 14-10-2018 IPR032781 ABC-transporter extension domain YP_1381 4fcff69db3ae0f4c03f11c5232ae0dd1 587 Pfam PF00005 ABC transporter 74 240 2.0E-18 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1381 4fcff69db3ae0f4c03f11c5232ae0dd1 587 SUPERFAMILY SSF52540 62 293 3.87E-45 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1381 4fcff69db3ae0f4c03f11c5232ae0dd1 587 Pfam PF00005 ABC transporter 392 523 4.9E-25 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1086 6ada15d220ceece64e69ed4967e907ff 266 SUPERFAMILY SSF100950 1 263 5.02E-104 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_1086 6ada15d220ceece64e69ed4967e907ff 266 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 247 40.398 T 14-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 YP_1086 6ada15d220ceece64e69ed4967e907ff 266 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 9 230 7.8E-21 T 14-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 YP_1086 6ada15d220ceece64e69ed4967e907ff 266 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 125 143 - T 14-10-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 YP_1086 6ada15d220ceece64e69ed4967e907ff 266 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 259 2.5E-138 T 14-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 YP_1086 6ada15d220ceece64e69ed4967e907ff 266 Gene3D G3DSA:3.40.50.1360 1 266 5.7E-116 T 14-10-2018 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 Gene3D G3DSA:1.10.730.10 389 526 1.0E-32 T 14-10-2018 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 SUPERFAMILY SSF50249 568 674 2.33E-28 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_1411 381a78c5b41808a611ce611e4d203ca2 675 Gene3D G3DSA:2.20.28.20 142 176 3.4E-161 T 14-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 Pfam PF09334 tRNA synthetases class I (M) 8 396 4.3E-163 T 14-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 Gene3D G3DSA:3.40.50.620 8 384 3.4E-161 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_1411 381a78c5b41808a611ce611e4d203ca2 675 SUPERFAMILY SSF47323 390 546 1.2E-43 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 Hamap MF_00098 Methionine--tRNA ligase [metG]. 6 545 41.173 T 14-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 Gene3D G3DSA:2.40.50.140 563 675 2.7E-29 T 14-10-2018 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 8 535 6.0E-198 T 14-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 SUPERFAMILY SSF52374 6 387 3.58E-101 T 14-10-2018 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 SUPERFAMILY SSF57770 142 176 1.12E-12 T 14-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 538 675 6.7E-45 T 14-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 90 101 2.1E-25 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 10 23 2.1E-25 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 251 262 2.1E-25 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 384 395 2.1E-25 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 42 56 2.1E-25 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 291 306 2.1E-25 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 YP_1411 381a78c5b41808a611ce611e4d203ca2 675 Pfam PF01588 Putative tRNA binding domain 579 672 2.1E-21 T 14-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 YP_0245 7379f7332f1a3cdbaf63dff970b8d0c3 273 SUPERFAMILY SSF53223 4 102 2.24E-31 T 14-10-2018 YP_0245 7379f7332f1a3cdbaf63dff970b8d0c3 273 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 5 271 3.2E-96 T 14-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 YP_0245 7379f7332f1a3cdbaf63dff970b8d0c3 273 Gene3D G3DSA:3.40.50.10860 6 255 1.8E-85 T 14-10-2018 YP_0245 7379f7332f1a3cdbaf63dff970b8d0c3 273 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 270 33.12 T 14-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 YP_0245 7379f7332f1a3cdbaf63dff970b8d0c3 273 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 120 191 1.0E-10 T 14-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_0245 7379f7332f1a3cdbaf63dff970b8d0c3 273 SUPERFAMILY SSF51735 103 269 6.27E-42 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0245 7379f7332f1a3cdbaf63dff970b8d0c3 273 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 89 2.9E-25 T 14-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 YP_0245 7379f7332f1a3cdbaf63dff970b8d0c3 273 Gene3D G3DSA:3.40.50.720 103 245 1.8E-85 T 14-10-2018 YP_3831 6648d6fb917f2e7e1522a3d21e929031 324 Gene3D G3DSA:1.20.58.1130 8 207 2.2E-85 T 14-10-2018 YP_3831 6648d6fb917f2e7e1522a3d21e929031 324 Pfam PF01699 Sodium/calcium exchanger protein 5 144 8.1E-30 T 14-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 YP_3831 6648d6fb917f2e7e1522a3d21e929031 324 Pfam PF01699 Sodium/calcium exchanger protein 175 317 3.2E-27 T 14-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 YP_3831 6648d6fb917f2e7e1522a3d21e929031 324 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 2 312 9.6E-89 T 14-10-2018 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 YP_3831 6648d6fb917f2e7e1522a3d21e929031 324 Gene3D G3DSA:1.20.1420.30 35 309 2.2E-85 T 14-10-2018 YP_1309 ba3a9a738b8a05640d5a2e657df3054a 490 Gene3D G3DSA:3.40.50.720 8 281 8.2E-105 T 14-10-2018 YP_1309 ba3a9a738b8a05640d5a2e657df3054a 490 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 26 188 1.7E-42 T 14-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 YP_1309 ba3a9a738b8a05640d5a2e657df3054a 490 SUPERFAMILY SSF48179 283 487 9.18E-66 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_1309 ba3a9a738b8a05640d5a2e657df3054a 490 PRINTS PR00084 Mannitol dehydrogenase signature 27 37 8.4E-22 T 14-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YP_1309 ba3a9a738b8a05640d5a2e657df3054a 490 PRINTS PR00084 Mannitol dehydrogenase signature 248 263 8.4E-22 T 14-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YP_1309 ba3a9a738b8a05640d5a2e657df3054a 490 PRINTS PR00084 Mannitol dehydrogenase signature 218 231 8.4E-22 T 14-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YP_1309 ba3a9a738b8a05640d5a2e657df3054a 490 PRINTS PR00084 Mannitol dehydrogenase signature 179 192 8.4E-22 T 14-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YP_1309 ba3a9a738b8a05640d5a2e657df3054a 490 SUPERFAMILY SSF51735 3 282 1.18E-94 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1309 ba3a9a738b8a05640d5a2e657df3054a 490 Gene3D G3DSA:1.10.1040.10 282 490 1.6E-78 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YP_1309 ba3a9a738b8a05640d5a2e657df3054a 490 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 216 462 1.2E-94 T 14-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 YP_1309 ba3a9a738b8a05640d5a2e657df3054a 490 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 218 230 - T 14-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YP_1594 45b7ae7312658bc95de91bf697f30e79 137 Pfam PF00460 Flagella basal body rod protein 9 39 3.1E-12 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YP_1594 45b7ae7312658bc95de91bf697f30e79 137 PIRSF PIRSF002889 1 137 4.8E-41 T 14-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 YP_1594 45b7ae7312658bc95de91bf697f30e79 137 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 14-10-2018 IPR019776 Flagellar basal body rod protein, conserved site YP_1594 45b7ae7312658bc95de91bf697f30e79 137 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 6 135 4.8E-42 T 14-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 YP_0909 505afeecd78dd91db52c5cd8a21408ad 80 Gene3D G3DSA:3.30.910.10 1 79 3.8E-16 T 14-10-2018 IPR036687 DinI-like superfamily YP_0909 505afeecd78dd91db52c5cd8a21408ad 80 Pfam PF06183 DinI-like family 17 76 7.9E-22 T 14-10-2018 IPR010391 DNA damage-inducible protein DinI-like YP_0909 505afeecd78dd91db52c5cd8a21408ad 80 SUPERFAMILY SSF54857 1 78 1.28E-23 T 14-10-2018 IPR036687 DinI-like superfamily YP_1248 e81609fe29a58a35c051a57ce726cd76 286 SUPERFAMILY SSF103481 182 282 2.09E-12 T 14-10-2018 YP_1248 e81609fe29a58a35c051a57ce726cd76 286 SUPERFAMILY SSF103481 43 141 3.92E-14 T 14-10-2018 YP_1248 e81609fe29a58a35c051a57ce726cd76 286 Pfam PF00892 EamA-like transporter family 151 275 1.9E-8 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_1248 e81609fe29a58a35c051a57ce726cd76 286 Pfam PF00892 EamA-like transporter family 9 138 6.1E-17 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_2615 5927c1a516c41360fb93996eb5e70ae8 328 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 4 318 4.3E-83 T 14-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 YP_2615 5927c1a516c41360fb93996eb5e70ae8 328 Hamap MF_00509 Cell division protein ZipA [zipA]. 3 320 24.729 T 14-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 YP_2615 5927c1a516c41360fb93996eb5e70ae8 328 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 191 317 2.5E-49 T 14-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 YP_2615 5927c1a516c41360fb93996eb5e70ae8 328 SUPERFAMILY SSF64383 189 322 9.15E-49 T 14-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 YP_2615 5927c1a516c41360fb93996eb5e70ae8 328 Gene3D G3DSA:3.30.1400.10 186 326 9.1E-55 T 14-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 YP_2615 5927c1a516c41360fb93996eb5e70ae8 328 SMART SM00771 188 318 2.5E-78 T 14-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 YP_2615 5927c1a516c41360fb93996eb5e70ae8 328 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 207 325 4.0E-65 T 14-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 YP_2349 f0af4cef9695918e79ed70ad80d8a631 427 SUPERFAMILY SSF51445 70 364 6.58E-32 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_2349 f0af4cef9695918e79ed70ad80d8a631 427 Gene3D G3DSA:3.20.20.70 125 349 1.8E-10 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_2349 f0af4cef9695918e79ed70ad80d8a631 427 Pfam PF02638 Glycosyl hydrolase-like 10 43 377 7.9E-102 T 14-10-2018 IPR003790 Glycosyl hydrolase-like 10 YP_0919 2459f28e853cc1b5fe290d35a9d9b383 217 Gene3D G3DSA:3.40.50.2300 1 142 2.9E-30 T 14-10-2018 YP_0919 2459f28e853cc1b5fe290d35a9d9b383 217 Pfam PF00072 Response regulator receiver domain 6 120 8.1E-25 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0919 2459f28e853cc1b5fe290d35a9d9b383 217 Hamap MF_00981 Transcriptional regulatory protein RcsB [rcsB]. 1 214 51.731 T 14-10-2018 IPR030864 Transcriptional regulatory protein RcsB GO:0000160|GO:0006355 YP_0919 2459f28e853cc1b5fe290d35a9d9b383 217 SMART SM00421 148 205 2.3E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_0919 2459f28e853cc1b5fe290d35a9d9b383 217 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_0919 2459f28e853cc1b5fe290d35a9d9b383 217 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 1.4E-17 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_0919 2459f28e853cc1b5fe290d35a9d9b383 217 SMART SM00448 4 120 4.3E-15 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0919 2459f28e853cc1b5fe290d35a9d9b383 217 Gene3D G3DSA:1.10.10.10 143 207 2.0E-14 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0919 2459f28e853cc1b5fe290d35a9d9b383 217 SUPERFAMILY SSF46894 144 206 1.84E-16 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_0919 2459f28e853cc1b5fe290d35a9d9b383 217 SUPERFAMILY SSF52172 3 136 2.7E-22 T 14-10-2018 IPR011006 CheY-like superfamily YP_0919 2459f28e853cc1b5fe290d35a9d9b383 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 8.1E-8 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_0919 2459f28e853cc1b5fe290d35a9d9b383 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 8.1E-8 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_0919 2459f28e853cc1b5fe290d35a9d9b383 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 8.1E-8 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2547 dc149e615b83d5e0c37bf08787661a22 396 Gene3D G3DSA:3.40.50.80 256 396 1.8E-32 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_2547 dc149e615b83d5e0c37bf08787661a22 396 SUPERFAMILY SSF46458 1 142 1.83E-39 T 14-10-2018 IPR009050 Globin-like superfamily YP_2547 dc149e615b83d5e0c37bf08787661a22 396 Pfam PF00970 Oxidoreductase FAD-binding domain 156 252 2.2E-10 T 14-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 YP_2547 dc149e615b83d5e0c37bf08787661a22 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 358 366 5.5E-6 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_2547 dc149e615b83d5e0c37bf08787661a22 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 183 193 5.5E-6 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_2547 dc149e615b83d5e0c37bf08787661a22 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 263 282 5.5E-6 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_2547 dc149e615b83d5e0c37bf08787661a22 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 204 211 5.5E-6 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_2547 dc149e615b83d5e0c37bf08787661a22 396 SUPERFAMILY SSF63380 148 253 9.03E-29 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YP_2547 dc149e615b83d5e0c37bf08787661a22 396 Gene3D G3DSA:2.40.30.10 149 254 2.1E-32 T 14-10-2018 YP_2547 dc149e615b83d5e0c37bf08787661a22 396 Pfam PF00175 Oxidoreductase NAD-binding domain 264 371 3.0E-15 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 YP_2547 dc149e615b83d5e0c37bf08787661a22 396 Hamap MF_01252 Flavohemoprotein [hmp]. 1 396 58.211 T 14-10-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 YP_2547 dc149e615b83d5e0c37bf08787661a22 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 183 195 3.1E-6 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YP_2547 dc149e615b83d5e0c37bf08787661a22 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 358 366 3.1E-6 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YP_2547 dc149e615b83d5e0c37bf08787661a22 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 263 282 3.1E-6 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YP_2547 dc149e615b83d5e0c37bf08787661a22 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 247 256 3.1E-6 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YP_2547 dc149e615b83d5e0c37bf08787661a22 396 SUPERFAMILY SSF52343 254 395 7.46E-38 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_2547 dc149e615b83d5e0c37bf08787661a22 396 Gene3D G3DSA:1.10.490.10 1 142 9.0E-52 T 14-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 YP_2547 dc149e615b83d5e0c37bf08787661a22 396 Pfam PF00042 Globin 7 102 1.9E-13 T 14-10-2018 IPR000971 Globin GO:0020037 YP_3782 eec21cab59589d9994f11392421b823a 398 Pfam PF05987 Bacterial protein of unknown function (DUF898) 12 391 8.8E-100 T 14-10-2018 IPR010295 Protein of unknown function DUF898 YP_0212 f8dac1c557d023b0b5dfdfbd193dce1b 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 28.807 T 14-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0212 f8dac1c557d023b0b5dfdfbd193dce1b 110 SUPERFAMILY SSF54843 1 109 1.57E-42 T 14-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 YP_0212 f8dac1c557d023b0b5dfdfbd193dce1b 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 14-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0212 f8dac1c557d023b0b5dfdfbd193dce1b 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 1.5E-50 T 14-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0212 f8dac1c557d023b0b5dfdfbd193dce1b 110 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 8.3E-38 T 14-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 YP_0212 f8dac1c557d023b0b5dfdfbd193dce1b 110 Gene3D G3DSA:3.90.470.10 1 110 2.4E-46 T 14-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 YP_3852 69a264fdd6e0df814dce196e16219f6e 446 SUPERFAMILY SSF111283 13 446 6.28E-128 T 14-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 YP_3852 69a264fdd6e0df814dce196e16219f6e 446 Gene3D G3DSA:3.30.2290.10 7 232 6.7E-93 T 14-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal YP_3852 69a264fdd6e0df814dce196e16219f6e 446 Pfam PF01523 Putative modulator of DNA gyrase 32 323 3.7E-59 T 14-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 YP_0931 12014d6c027a795cb412c4cb2c5f9a98 480 Pfam PF06628 Catalase-related immune-responsive 417 477 1.6E-21 T 14-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YP_0931 12014d6c027a795cb412c4cb2c5f9a98 480 ProSitePatterns PS00438 Catalase proximal active site signature. 45 61 - T 14-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YP_0931 12014d6c027a795cb412c4cb2c5f9a98 480 PIRSF PIRSF038928 1 480 7.5E-220 T 14-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YP_0931 12014d6c027a795cb412c4cb2c5f9a98 480 Pfam PF00199 Catalase 9 389 2.5E-187 T 14-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YP_0931 12014d6c027a795cb412c4cb2c5f9a98 480 Gene3D G3DSA:2.40.180.10 3 480 1.2E-232 T 14-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 YP_0931 12014d6c027a795cb412c4cb2c5f9a98 480 PRINTS PR00067 Catalase signature 85 103 1.1E-70 T 14-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YP_0931 12014d6c027a795cb412c4cb2c5f9a98 480 PRINTS PR00067 Catalase signature 322 348 1.1E-70 T 14-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YP_0931 12014d6c027a795cb412c4cb2c5f9a98 480 PRINTS PR00067 Catalase signature 106 123 1.1E-70 T 14-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YP_0931 12014d6c027a795cb412c4cb2c5f9a98 480 PRINTS PR00067 Catalase signature 125 143 1.1E-70 T 14-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YP_0931 12014d6c027a795cb412c4cb2c5f9a98 480 PRINTS PR00067 Catalase signature 22 45 1.1E-70 T 14-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YP_0931 12014d6c027a795cb412c4cb2c5f9a98 480 PRINTS PR00067 Catalase signature 290 317 1.1E-70 T 14-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YP_0931 12014d6c027a795cb412c4cb2c5f9a98 480 SUPERFAMILY SSF56634 4 479 7.59E-211 T 14-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YP_0931 12014d6c027a795cb412c4cb2c5f9a98 480 SMART SM01060 9 393 4.3E-281 T 14-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YP_0709 79e3499663fe77317dbd28e879d98aa7 421 Hamap MF_01063 Esterase FrsA [frsA]. 7 421 60.768 T 14-10-2018 IPR010520 UPF0255 family YP_0709 79e3499663fe77317dbd28e879d98aa7 421 Pfam PF06500 Alpha/beta hydrolase of unknown function (DUF1100) 7 420 7.9E-225 T 14-10-2018 IPR010520 UPF0255 family YP_0709 79e3499663fe77317dbd28e879d98aa7 421 Gene3D G3DSA:3.40.50.1820 22 420 1.3E-110 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_0709 79e3499663fe77317dbd28e879d98aa7 421 SUPERFAMILY SSF53474 52 418 3.4E-55 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_2996 e6465be51941e8a0b2e2fd71386a75d4 403 PIRSF PIRSF001434 2 400 5.8E-114 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YP_2996 e6465be51941e8a0b2e2fd71386a75d4 403 Gene3D G3DSA:3.90.1150.10 264 400 5.9E-40 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_2996 e6465be51941e8a0b2e2fd71386a75d4 403 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 13 399 9.9E-168 T 14-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 YP_2996 e6465be51941e8a0b2e2fd71386a75d4 403 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 207 221 - T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YP_2996 e6465be51941e8a0b2e2fd71386a75d4 403 Gene3D G3DSA:3.40.640.10 7 263 1.4E-69 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_2996 e6465be51941e8a0b2e2fd71386a75d4 403 SUPERFAMILY SSF53383 28 398 1.21E-88 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_2996 e6465be51941e8a0b2e2fd71386a75d4 403 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 12 397 2.4E-111 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YP_3980 874760c3d056522572283ad76ea8d294 241 Pfam PF11254 Protein of unknown function (DUF3053) 20 236 4.6E-93 T 14-10-2018 IPR021413 Protein of unknown function DUF3053 YP_0767 496887891a01b2fe4231020d6a0819af 318 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 13 240 1.3E-113 T 14-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 YP_0767 496887891a01b2fe4231020d6a0819af 318 Pfam PF06481 COX Aromatic Rich Motif 240 286 5.2E-20 T 14-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 YP_0767 496887891a01b2fe4231020d6a0819af 318 SUPERFAMILY SSF49503 124 282 7.71E-53 T 14-10-2018 IPR008972 Cupredoxin YP_0767 496887891a01b2fe4231020d6a0819af 318 PIRSF PIRSF000292 1 314 5.8E-130 T 14-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 YP_0767 496887891a01b2fe4231020d6a0819af 318 Gene3D G3DSA:1.10.287.90 28 112 3.6E-32 T 14-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0767 496887891a01b2fe4231020d6a0819af 318 Gene3D G3DSA:2.60.40.420 113 283 3.7E-59 T 14-10-2018 IPR008972 Cupredoxin YP_0767 496887891a01b2fe4231020d6a0819af 318 SUPERFAMILY SSF81464 18 116 4.58E-23 T 14-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_1373 ab9bc3fc415e3375ebf47e5aae60fc71 361 Pfam PF05488 PAAR motif 18 73 9.5E-8 T 14-10-2018 IPR008727 PAAR motif YP_1373 ab9bc3fc415e3375ebf47e5aae60fc71 361 Pfam PF15607 Bacterial toxin 44 205 312 1.9E-26 T 14-10-2018 IPR028946 Bacterial toxin 44 YP_0407 6176829217cade18f860d2ddfcb3f186 422 PRINTS PR00173 Glutamate-aspartate symporter signature 139 161 8.2E-50 T 14-10-2018 YP_0407 6176829217cade18f860d2ddfcb3f186 422 PRINTS PR00173 Glutamate-aspartate symporter signature 35 55 8.2E-50 T 14-10-2018 YP_0407 6176829217cade18f860d2ddfcb3f186 422 PRINTS PR00173 Glutamate-aspartate symporter signature 65 90 8.2E-50 T 14-10-2018 YP_0407 6176829217cade18f860d2ddfcb3f186 422 PRINTS PR00173 Glutamate-aspartate symporter signature 187 206 8.2E-50 T 14-10-2018 YP_0407 6176829217cade18f860d2ddfcb3f186 422 PRINTS PR00173 Glutamate-aspartate symporter signature 287 313 8.2E-50 T 14-10-2018 YP_0407 6176829217cade18f860d2ddfcb3f186 422 PRINTS PR00173 Glutamate-aspartate symporter signature 322 341 8.2E-50 T 14-10-2018 YP_0407 6176829217cade18f860d2ddfcb3f186 422 PRINTS PR00173 Glutamate-aspartate symporter signature 349 369 8.2E-50 T 14-10-2018 YP_0407 6176829217cade18f860d2ddfcb3f186 422 Hamap MF_02063 Proton/glutamate-aspartate symporter [gltP]. 1 412 43.194 T 14-10-2018 IPR034703 Proton/glutamate-aspartate symporter GltP GO:0006835|GO:0015293|GO:0016021 YP_0407 6176829217cade18f860d2ddfcb3f186 422 SUPERFAMILY SSF118215 1 396 2.48E-120 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 YP_0407 6176829217cade18f860d2ddfcb3f186 422 Gene3D G3DSA:1.10.3860.10 1 411 4.5E-132 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 YP_0407 6176829217cade18f860d2ddfcb3f186 422 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 27 42 - T 14-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site YP_0407 6176829217cade18f860d2ddfcb3f186 422 Pfam PF00375 Sodium:dicarboxylate symporter family 1 395 1.7E-113 T 14-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 YP_0407 6176829217cade18f860d2ddfcb3f186 422 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 290 313 - T 14-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site YP_0260 5ba253c995e615fc6fbf1da85d9e911a 315 SUPERFAMILY SSF51690 143 314 5.89E-57 T 14-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 YP_0260 5ba253c995e615fc6fbf1da85d9e911a 315 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 56 141 3.7E-26 T 14-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 YP_0260 5ba253c995e615fc6fbf1da85d9e911a 315 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 143 313 1.5E-59 T 14-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 YP_0260 5ba253c995e615fc6fbf1da85d9e911a 315 PIRSF PIRSF006250 30 315 2.9E-103 T 14-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 YP_0260 5ba253c995e615fc6fbf1da85d9e911a 315 SUPERFAMILY SSF54675 27 142 6.28E-32 T 14-10-2018 YP_0260 5ba253c995e615fc6fbf1da85d9e911a 315 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 40 314 3.3E-97 T 14-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 YP_0260 5ba253c995e615fc6fbf1da85d9e911a 315 Gene3D G3DSA:3.90.1170.20 34 313 7.3E-118 T 14-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 YP_0260 5ba253c995e615fc6fbf1da85d9e911a 315 Gene3D G3DSA:3.20.20.70 152 304 7.3E-118 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_0642 5d15f456f2bcae339189ac616dad4869 149 Gene3D G3DSA:3.40.50.10110 1 146 2.7E-51 T 14-10-2018 IPR036768 DNA polymerase III subunit chi superfamily YP_0642 5d15f456f2bcae339189ac616dad4869 149 SUPERFAMILY SSF102400 1 143 9.55E-48 T 14-10-2018 IPR036768 DNA polymerase III subunit chi superfamily YP_0642 5d15f456f2bcae339189ac616dad4869 149 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 142 3.9E-39 T 14-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 YP_3518 a5e1f37b1fc95de0696db3199471c9af 338 SUPERFAMILY SSF55347 155 317 4.46E-54 T 14-10-2018 YP_3518 a5e1f37b1fc95de0696db3199471c9af 338 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 160 316 4.8E-51 T 14-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3518 a5e1f37b1fc95de0696db3199471c9af 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 1.4E-28 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3518 a5e1f37b1fc95de0696db3199471c9af 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 149 167 1.4E-28 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3518 a5e1f37b1fc95de0696db3199471c9af 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 176 192 1.4E-28 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3518 a5e1f37b1fc95de0696db3199471c9af 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 1.4E-28 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3518 a5e1f37b1fc95de0696db3199471c9af 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 1.4E-28 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3518 a5e1f37b1fc95de0696db3199471c9af 338 TIGRFAM TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase 4 328 9.5E-185 T 14-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 YP_3518 a5e1f37b1fc95de0696db3199471c9af 338 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 104 3.7E-33 T 14-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3518 a5e1f37b1fc95de0696db3199471c9af 338 SMART SM00846 3 155 3.0E-78 T 14-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3518 a5e1f37b1fc95de0696db3199471c9af 338 Hamap MF_01640 D-erythrose-4-phosphate dehydrogenase [epd]. 2 337 64.406 T 14-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 YP_3518 a5e1f37b1fc95de0696db3199471c9af 338 Gene3D G3DSA:3.30.360.10 154 318 3.1E-128 T 14-10-2018 YP_3518 a5e1f37b1fc95de0696db3199471c9af 338 SUPERFAMILY SSF51735 1 154 3.96E-53 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3518 a5e1f37b1fc95de0696db3199471c9af 338 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 153 160 - T 14-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3518 a5e1f37b1fc95de0696db3199471c9af 338 PIRSF PIRSF000149 1 337 6.6E-128 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3518 a5e1f37b1fc95de0696db3199471c9af 338 Gene3D G3DSA:3.40.50.720 4 328 3.1E-128 T 14-10-2018 YP_0978 0c3ea767f739636cbc898825c501c49c 368 Pfam PF12698 ABC-2 family transporter protein 25 355 9.7E-50 T 14-10-2018 YP_0978 0c3ea767f739636cbc898825c501c49c 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 253 277 1.4E-6 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 YP_0978 0c3ea767f739636cbc898825c501c49c 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 290 309 1.4E-6 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 YP_0978 0c3ea767f739636cbc898825c501c49c 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 310 329 1.4E-6 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 YP_3904 fe9cbf7c7862b3172d5c408cb3376981 95 SUPERFAMILY SSF50249 25 94 1.1E-24 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_3904 fe9cbf7c7862b3172d5c408cb3376981 95 PRINTS PR00050 Cold shock protein signature 53 62 3.0E-17 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_3904 fe9cbf7c7862b3172d5c408cb3376981 95 PRINTS PR00050 Cold shock protein signature 68 86 3.0E-17 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_3904 fe9cbf7c7862b3172d5c408cb3376981 95 PRINTS PR00050 Cold shock protein signature 32 47 3.0E-17 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_3904 fe9cbf7c7862b3172d5c408cb3376981 95 ProSitePatterns PS00352 'Cold-shock' domain signature. 43 62 - T 14-10-2018 IPR019844 Cold-shock conserved site YP_3904 fe9cbf7c7862b3172d5c408cb3376981 95 SMART SM00357 31 95 5.6E-30 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 YP_3904 fe9cbf7c7862b3172d5c408cb3376981 95 Pfam PF00313 'Cold-shock' DNA-binding domain 30 94 1.0E-31 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_3904 fe9cbf7c7862b3172d5c408cb3376981 95 PIRSF PIRSF002599 25 95 3.5E-23 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 YP_3904 fe9cbf7c7862b3172d5c408cb3376981 95 Gene3D G3DSA:2.40.50.140 25 94 8.7E-29 T 14-10-2018 YP_3126 067651b413db9bb4161fc3c475adf263 830 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 61 830 2.0E-120 T 14-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 YP_3126 067651b413db9bb4161fc3c475adf263 830 Pfam PF00593 TonB dependent receptor 323 829 4.3E-36 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YP_3126 067651b413db9bb4161fc3c475adf263 830 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 54 830 5.0E-167 T 14-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 YP_3126 067651b413db9bb4161fc3c475adf263 830 Gene3D G3DSA:2.40.170.20 192 830 6.4E-141 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_3126 067651b413db9bb4161fc3c475adf263 830 Gene3D G3DSA:2.170.130.10 64 190 9.2E-46 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YP_3126 067651b413db9bb4161fc3c475adf263 830 SUPERFAMILY SSF56935 67 830 7.06E-84 T 14-10-2018 YP_3126 067651b413db9bb4161fc3c475adf263 830 Pfam PF07715 TonB-dependent Receptor Plug Domain 69 176 5.5E-16 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain YP_1245 101711abf74667296a82c58b6188502b 251 SUPERFAMILY SSF53850 9 250 5.98E-73 T 14-10-2018 YP_1245 101711abf74667296a82c58b6188502b 251 SMART SM00062 30 249 7.8E-87 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_1245 101711abf74667296a82c58b6188502b 251 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 53 66 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site YP_1245 101711abf74667296a82c58b6188502b 251 SMART SM00079 30 251 9.2E-5 T 14-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 YP_1245 101711abf74667296a82c58b6188502b 251 Gene3D G3DSA:3.40.190.10 34 248 1.2E-83 T 14-10-2018 YP_1245 101711abf74667296a82c58b6188502b 251 Gene3D G3DSA:3.40.190.10 116 209 1.2E-83 T 14-10-2018 YP_1245 101711abf74667296a82c58b6188502b 251 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 250 1.4E-70 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_1245 101711abf74667296a82c58b6188502b 251 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 13 249 1.6E-90 T 14-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 YP_4011 ed662257349c4c6593616eab2b798841 399 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 79 3.8E-38 T 14-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YP_4011 ed662257349c4c6593616eab2b798841 399 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 393 54.527 T 14-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YP_4011 ed662257349c4c6593616eab2b798841 399 Gene3D G3DSA:3.40.50.720 1 399 2.7E-185 T 14-10-2018 YP_4011 ed662257349c4c6593616eab2b798841 399 Pfam PF07055 Enoyl reductase FAD binding domain 324 387 2.4E-28 T 14-10-2018 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YP_4011 ed662257349c4c6593616eab2b798841 399 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 82 317 2.8E-106 T 14-10-2018 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YP_3543 e6efe0543d72250e61459ec00b3a6b5e 360 Gene3D G3DSA:1.10.260.40 1 60 2.6E-9 T 14-10-2018 YP_3543 e6efe0543d72250e61459ec00b3a6b5e 360 SMART SM00354 4 71 1.9E-4 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_3543 e6efe0543d72250e61459ec00b3a6b5e 360 Gene3D G3DSA:3.40.50.2300 164 335 1.5E-45 T 14-10-2018 YP_3543 e6efe0543d72250e61459ec00b3a6b5e 360 SUPERFAMILY SSF47413 5 59 2.44E-8 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_3543 e6efe0543d72250e61459ec00b3a6b5e 360 SUPERFAMILY SSF53822 75 340 7.07E-42 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_3543 e6efe0543d72250e61459ec00b3a6b5e 360 Pfam PF13377 Periplasmic binding protein-like domain 173 338 1.1E-28 T 14-10-2018 YP_3543 e6efe0543d72250e61459ec00b3a6b5e 360 Gene3D G3DSA:3.40.50.2300 75 330 1.5E-45 T 14-10-2018 YP_3543 e6efe0543d72250e61459ec00b3a6b5e 360 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 47 4.3E-8 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_0130 150ce14792ac4cba66234246b86ebc33 265 Gene3D G3DSA:3.40.50.1820 6 262 7.1E-73 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_0130 150ce14792ac4cba66234246b86ebc33 265 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 11 261 47.43 T 14-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 YP_0130 150ce14792ac4cba66234246b86ebc33 265 SUPERFAMILY SSF53474 10 259 6.43E-48 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_0130 150ce14792ac4cba66234246b86ebc33 265 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 17 259 1.5E-100 T 14-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 YP_0130 150ce14792ac4cba66234246b86ebc33 265 Pfam PF00561 alpha/beta hydrolase fold 23 249 2.6E-24 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YP_2230 518286dc81da5b21af433b91689c2e51 297 Pfam PF00950 ABC 3 transport family 14 268 1.5E-98 T 14-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 YP_2230 518286dc81da5b21af433b91689c2e51 297 Gene3D G3DSA:1.10.3470.10 46 272 2.4E-9 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_2230 518286dc81da5b21af433b91689c2e51 297 SUPERFAMILY SSF81345 5 266 2.62E-45 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_3697 648a7717a9e49518c178afdfac51af2d 1077 SUPERFAMILY SSF52440 558 676 1.11E-48 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YP_3697 648a7717a9e49518c178afdfac51af2d 1077 SUPERFAMILY SSF48108 396 554 5.62E-53 T 14-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 Gene3D G3DSA:3.30.470.20 119 403 2.3E-132 T 14-10-2018 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1063 13.12 T 14-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 Gene3D G3DSA:3.40.50.20 1 116 1.4E-49 T 14-10-2018 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 839 846 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 Gene3D G3DSA:3.40.50.20 524 663 2.4E-64 T 14-10-2018 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.4E-76 T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 674 876 5.7E-37 T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 1.9E-63 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 1.9E-63 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 1.9E-63 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 1.9E-63 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 1.9E-63 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 1.9E-63 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 1.9E-63 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 Gene3D G3DSA:1.10.1030.10 404 522 8.6E-39 T 14-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 SUPERFAMILY SSF52335 939 1071 1.7E-34 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily YP_3697 648a7717a9e49518c178afdfac51af2d 1077 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1068 13.323 T 14-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 710 724 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 Pfam PF02142 MGS-like domain 957 1041 4.7E-18 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain YP_3697 648a7717a9e49518c178afdfac51af2d 1077 SMART SM01096 424 547 2.5E-74 T 14-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 Gene3D G3DSA:3.40.50.1380 937 1073 3.3E-35 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily YP_3697 648a7717a9e49518c178afdfac51af2d 1077 Gene3D G3DSA:3.30.470.20 666 936 1.2E-124 T 14-10-2018 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 SUPERFAMILY SSF56059 674 934 4.77E-104 T 14-10-2018 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 SUPERFAMILY SSF56059 128 401 2.3E-109 T 14-10-2018 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1053 0.0 T 14-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 2.0E-39 T 14-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YP_3697 648a7717a9e49518c178afdfac51af2d 1077 SUPERFAMILY SSF52440 1 127 2.73E-48 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YP_3697 648a7717a9e49518c178afdfac51af2d 1077 SMART SM00851 956 1042 1.3E-30 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain YP_0065 a5d67ba558b6fe71fbcd47adfa83b37c 144 SMART SM00450 41 139 2.0E-18 T 14-10-2018 IPR001763 Rhodanese-like domain YP_0065 a5d67ba558b6fe71fbcd47adfa83b37c 144 SUPERFAMILY SSF52821 17 143 1.7E-29 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily YP_0065 a5d67ba558b6fe71fbcd47adfa83b37c 144 Gene3D G3DSA:3.40.250.10 23 142 1.4E-24 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily YP_0065 a5d67ba558b6fe71fbcd47adfa83b37c 144 Pfam PF00581 Rhodanese-like domain 44 134 1.1E-16 T 14-10-2018 IPR001763 Rhodanese-like domain YP_0230 c1ca87aaced6c0e7222f5c1f70ff2d28 129 SUPERFAMILY SSF53137 15 129 4.58E-48 T 14-10-2018 YP_0230 c1ca87aaced6c0e7222f5c1f70ff2d28 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 14-10-2018 IPR018102 Ribosomal S11, conserved site YP_0230 c1ca87aaced6c0e7222f5c1f70ff2d28 129 PIRSF PIRSF002131 1 129 1.3E-52 T 14-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 YP_0230 c1ca87aaced6c0e7222f5c1f70ff2d28 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 2.8E-55 T 14-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0230 c1ca87aaced6c0e7222f5c1f70ff2d28 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 7 129 32.637 T 14-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 YP_0230 c1ca87aaced6c0e7222f5c1f70ff2d28 129 Pfam PF00411 Ribosomal protein S11 19 128 1.6E-54 T 14-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 YP_0230 c1ca87aaced6c0e7222f5c1f70ff2d28 129 Gene3D G3DSA:3.30.420.80 1 129 1.5E-58 T 14-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 YP_1545 0958ae21fdd1393d21e0753ff05a5911 253 SMART SM00382 28 221 6.7E-19 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1545 0958ae21fdd1393d21e0753ff05a5911 253 SUPERFAMILY SSF52540 4 243 3.17E-77 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1545 0958ae21fdd1393d21e0753ff05a5911 253 PIRSF PIRSF039085 1 249 9.3E-111 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 YP_1545 0958ae21fdd1393d21e0753ff05a5911 253 Gene3D G3DSA:3.40.50.300 1 251 7.1E-80 T 14-10-2018 YP_1545 0958ae21fdd1393d21e0753ff05a5911 253 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1545 0958ae21fdd1393d21e0753ff05a5911 253 Pfam PF00005 ABC transporter 19 173 5.1E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0029 7e129a41c0cd38201c501b47fd2ac07c 314 Pfam PF03631 Virulence factor BrkB 49 296 2.1E-54 T 14-10-2018 IPR017039 Virulence factor BrkB YP_0029 7e129a41c0cd38201c501b47fd2ac07c 314 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 39 297 4.4E-91 T 14-10-2018 IPR017039 Virulence factor BrkB YP_0029 7e129a41c0cd38201c501b47fd2ac07c 314 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 24 314 23.185 T 14-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial YP_0029 7e129a41c0cd38201c501b47fd2ac07c 314 PIRSF PIRSF035875 22 313 1.1E-61 T 14-10-2018 IPR017039 Virulence factor BrkB YP_0781 672dab55635d0342b33c91029a4181cd 232 Gene3D G3DSA:3.40.50.620 1 232 2.3E-84 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0781 672dab55635d0342b33c91029a4181cd 232 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 220 50.435 T 14-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 YP_0781 672dab55635d0342b33c91029a4181cd 232 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 207 5.4E-83 T 14-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 YP_0781 672dab55635d0342b33c91029a4181cd 232 Pfam PF06508 Queuosine biosynthesis protein QueC 3 214 2.7E-81 T 14-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 YP_0781 672dab55635d0342b33c91029a4181cd 232 PIRSF PIRSF006293 1 226 2.2E-82 T 14-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 YP_0781 672dab55635d0342b33c91029a4181cd 232 SUPERFAMILY SSF52402 1 215 3.53E-67 T 14-10-2018 YP_0285 e024b149bb26f3771bcf266800ee09e6 159 Gene3D G3DSA:3.30.70.560 1 159 2.7E-63 T 14-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 YP_0285 e024b149bb26f3771bcf266800ee09e6 159 SUPERFAMILY SSF55083 1 158 6.54E-55 T 14-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 YP_0285 e024b149bb26f3771bcf266800ee09e6 159 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 YP_0285 e024b149bb26f3771bcf266800ee09e6 159 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 134 2.4E-46 T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 YP_0285 e024b149bb26f3771bcf266800ee09e6 159 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 134 1.2E-36 T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 YP_pCRY14 23ce8d3cb44f4c380858d3777c18d7bd 302 Pfam PF03524 Conjugal transfer protein 31 275 2.1E-54 T 14-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX YP_pCRY14 23ce8d3cb44f4c380858d3777c18d7bd 302 Gene3D G3DSA:2.60.40.2500 168 302 1.0E-28 T 14-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily YP_pCRY14 23ce8d3cb44f4c380858d3777c18d7bd 302 TIGRFAM TIGR02781 VirB9: P-type conjugative transfer protein VirB9 5 278 2.6E-80 T 14-10-2018 IPR014148 P-type conjugative transfer protein VirB9 YP_0302 44239833b7604151ef2cad49e7ba3769 506 Pfam PF01966 HD domain 66 133 3.1E-10 T 14-10-2018 IPR006674 HD domain YP_0302 44239833b7604151ef2cad49e7ba3769 506 SUPERFAMILY SSF109604 30 503 4.71E-64 T 14-10-2018 YP_0302 44239833b7604151ef2cad49e7ba3769 506 Pfam PF13286 Phosphohydrolase-associated domain 461 501 7.7E-6 T 14-10-2018 IPR026875 Phosphohydrolase-associated domain YP_0302 44239833b7604151ef2cad49e7ba3769 506 Gene3D G3DSA:1.10.3210.10 1 162 3.2E-44 T 14-10-2018 YP_0302 44239833b7604151ef2cad49e7ba3769 506 Gene3D G3DSA:1.10.3210.10 163 258 4.6E-16 T 14-10-2018 YP_0302 44239833b7604151ef2cad49e7ba3769 506 SMART SM00471 62 283 2.6E-11 T 14-10-2018 IPR003607 HD/PDEase domain YP_0302 44239833b7604151ef2cad49e7ba3769 506 Gene3D G3DSA:1.10.3410.10 261 391 2.5E-22 T 14-10-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily KEGG: 00230+3.1.5.1 YP_0302 44239833b7604151ef2cad49e7ba3769 506 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 31 504 5.5E-126 T 14-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 YP_0302 44239833b7604151ef2cad49e7ba3769 506 Hamap MF_00030 Deoxyguanosinetriphosphate triphosphohydrolase [dgt]. 1 506 53.218 T 14-10-2018 IPR020779 dNTP triphosphohydrolase, type 1 GO:0000287|GO:0006203|GO:0008832 KEGG: 00230+3.1.5.1 YP_2311 9bc621caa705deea3f87c5b97ac7a2eb 365 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 248 267 - T 14-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 YP_2311 9bc621caa705deea3f87c5b97ac7a2eb 365 SUPERFAMILY SSF53659 3 363 7.1E-113 T 14-10-2018 YP_2311 9bc621caa705deea3f87c5b97ac7a2eb 365 SMART SM01329 10 359 9.6E-168 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 YP_2311 9bc621caa705deea3f87c5b97ac7a2eb 365 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 6 362 1.8E-165 T 14-10-2018 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 YP_2311 9bc621caa705deea3f87c5b97ac7a2eb 365 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 11 359 1.8E-81 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 YP_2311 9bc621caa705deea3f87c5b97ac7a2eb 365 Gene3D G3DSA:3.40.718.10 4 365 5.5E-143 T 14-10-2018 YP_3279 e850d91ad9879cedcff8887d0df1cd8f 506 SUPERFAMILY SSF50475 14 333 4.32E-128 T 14-10-2018 YP_3279 e850d91ad9879cedcff8887d0df1cd8f 506 Gene3D G3DSA:1.20.5.570 466 505 1.4E-19 T 14-10-2018 YP_3279 e850d91ad9879cedcff8887d0df1cd8f 506 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 12 498 73.86 T 14-10-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 YP_3279 e850d91ad9879cedcff8887d0df1cd8f 506 Gene3D G3DSA:3.40.1670.10 348 465 4.5E-52 T 14-10-2018 YP_3279 e850d91ad9879cedcff8887d0df1cd8f 506 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 17 466 2.1E-187 T 14-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 YP_3279 e850d91ad9879cedcff8887d0df1cd8f 506 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 22 442 1.3E-173 T 14-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 YP_3279 e850d91ad9879cedcff8887d0df1cd8f 506 SUPERFAMILY SSF143968 334 497 3.53E-68 T 14-10-2018 YP_pPCP05 6ba2f9e8d29a6f8a20abc38290e7d94b 145 Pfam PF16765 Pesticin immunity protein 9 99 3.4E-46 T 14-10-2018 IPR031911 Pesticin immunity protein YP_1697 f2c7a5dbe25386cfdd68a4eefc8ee33c 457 Pfam PF00535 Glycosyl transferase family 2 91 258 3.6E-36 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 YP_1697 f2c7a5dbe25386cfdd68a4eefc8ee33c 457 Gene3D G3DSA:3.90.550.10 82 299 1.1E-44 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_1697 f2c7a5dbe25386cfdd68a4eefc8ee33c 457 TIGRFAM TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase 43 451 2.0E-193 T 14-10-2018 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0043708 YP_1697 f2c7a5dbe25386cfdd68a4eefc8ee33c 457 SUPERFAMILY SSF53448 81 357 7.5E-64 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_2740 6c9cc5766dbdec78b26edfc2a0cb6d4c 318 Gene3D G3DSA:1.20.1530.20 164 316 2.1E-5 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily YP_2740 6c9cc5766dbdec78b26edfc2a0cb6d4c 318 Pfam PF03547 Membrane transport protein 14 150 1.7E-8 T 14-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 YP_2740 6c9cc5766dbdec78b26edfc2a0cb6d4c 318 Pfam PF03547 Membrane transport protein 169 307 3.9E-10 T 14-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 YP_3334 8071908ddfd9824af202c5fca1776d5d 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 202 445 2.3E-85 T 14-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 YP_3334 8071908ddfd9824af202c5fca1776d5d 447 SUPERFAMILY SSF53223 6 196 5.12E-74 T 14-10-2018 YP_3334 8071908ddfd9824af202c5fca1776d5d 447 PIRSF PIRSF000185 22 447 8.7E-114 T 14-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 YP_3334 8071908ddfd9824af202c5fca1776d5d 447 Gene3D G3DSA:3.40.50.720 209 373 1.7E-173 T 14-10-2018 YP_3334 8071908ddfd9824af202c5fca1776d5d 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 235 255 3.5E-33 T 14-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 YP_3334 8071908ddfd9824af202c5fca1776d5d 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 3.5E-33 T 14-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 YP_3334 8071908ddfd9824af202c5fca1776d5d 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 383 3.5E-33 T 14-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 YP_3334 8071908ddfd9824af202c5fca1776d5d 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 193 215 3.5E-33 T 14-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 YP_3334 8071908ddfd9824af202c5fca1776d5d 447 Gene3D G3DSA:1.10.285.10 401 447 1.1E-10 T 14-10-2018 YP_3334 8071908ddfd9824af202c5fca1776d5d 447 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 14-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 YP_3334 8071908ddfd9824af202c5fca1776d5d 447 Gene3D G3DSA:1.10.285.10 14 374 1.7E-173 T 14-10-2018 YP_3334 8071908ddfd9824af202c5fca1776d5d 447 SUPERFAMILY SSF51735 202 446 5.09E-73 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3334 8071908ddfd9824af202c5fca1776d5d 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 184 4.6E-51 T 14-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 YP_3334 8071908ddfd9824af202c5fca1776d5d 447 Gene3D G3DSA:3.40.50.10860 55 190 1.7E-173 T 14-10-2018 YP_3334 8071908ddfd9824af202c5fca1776d5d 447 SMART SM00839 204 445 6.6E-91 T 14-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 218 232 - T 14-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 Hamap MF_01646 Siroheme synthase [cysG]. 1 454 50.178 T 14-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 213 445 2.7E-91 T 14-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 Pfam PF10414 Sirohaem synthase dimerisation region 150 205 7.7E-17 T 14-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 Gene3D G3DSA:3.40.1010.10 212 328 9.8E-44 T 14-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 Gene3D G3DSA:3.40.50.720 1 112 2.6E-30 T 14-10-2018 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 215 424 3.0E-49 T 14-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 Gene3D G3DSA:3.30.950.10 329 454 4.4E-46 T 14-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 293 326 - T 14-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 SUPERFAMILY SSF51735 1 112 1.5E-26 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 PIRSF PIRSF036426 1 462 1.1E-198 T 14-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 Pfam PF14824 Sirohaem biosynthesis protein central 121 145 1.1E-8 T 14-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 Gene3D G3DSA:1.10.8.210 149 210 7.7E-23 T 14-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 SUPERFAMILY SSF75615 114 200 8.76E-24 T 14-10-2018 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 Gene3D G3DSA:3.30.160.110 113 148 6.6E-20 T 14-10-2018 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 SUPERFAMILY SSF53790 212 457 1.7E-79 T 14-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 Pfam PF13241 Putative NAD(P)-binding 6 115 8.8E-24 T 14-10-2018 YP_0160 56a2494f60a64f7e549dcd2388d157a3 470 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 203 1.5E-66 T 14-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YP_3730 64e9789a6f68301e7a7f14dadbea5a2b 133 TIGRFAM TIGR01321 TrpR: trp operon repressor 38 128 5.3E-35 T 14-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 YP_3730 64e9789a6f68301e7a7f14dadbea5a2b 133 PIRSF PIRSF003196 9 133 2.1E-41 T 14-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 YP_3730 64e9789a6f68301e7a7f14dadbea5a2b 133 Hamap MF_00475 Trp operon repressor [trpR]. 39 132 23.4 T 14-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 YP_3730 64e9789a6f68301e7a7f14dadbea5a2b 133 Gene3D G3DSA:1.10.1270.10 32 132 1.2E-36 T 14-10-2018 IPR038116 TrpR-like superfamily YP_3730 64e9789a6f68301e7a7f14dadbea5a2b 133 ProDom PD012582 REPRESSOR TRANSCRIPTION TRP OPERON DNA-BINDING REGULATION HOMOLOG AROH FOR TRYPTOPHAN 34 125 1.0E-35 T 14-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 YP_3730 64e9789a6f68301e7a7f14dadbea5a2b 133 Pfam PF01371 Trp repressor protein 41 127 2.5E-29 T 14-10-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 YP_3730 64e9789a6f68301e7a7f14dadbea5a2b 133 SUPERFAMILY SSF48295 30 128 2.82E-28 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 YP_3504 628af073ee1e0d677594a5767701e871 294 Gene3D G3DSA:3.60.110.10 1 293 2.9E-105 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YP_3504 628af073ee1e0d677594a5767701e871 294 SUPERFAMILY SSF56317 1 285 1.7E-81 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YP_3504 628af073ee1e0d677594a5767701e871 294 Pfam PF00795 Carbon-nitrogen hydrolase 5 268 3.3E-53 T 14-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 YP_3504 628af073ee1e0d677594a5767701e871 294 TIGRFAM TIGR03381 agmatine_aguB: N-carbamoylputrescine amidase 4 285 3.1E-146 T 14-10-2018 IPR017755 N-carbamoylputrescine amidase GO:0006596|GO:0050126 KEGG: 00330+3.5.1.53|MetaCyc: PWY-43 YP_3069 6a84c2f5ceeb9e506023cf38e7834dd4 172 Gene3D G3DSA:2.30.110.20 2 172 1.4E-67 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_3069 6a84c2f5ceeb9e506023cf38e7834dd4 172 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 168 2.1E-64 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_3069 6a84c2f5ceeb9e506023cf38e7834dd4 172 SUPERFAMILY SSF141452 3 168 1.57E-39 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_3069 6a84c2f5ceeb9e506023cf38e7834dd4 172 Pfam PF05638 Type VI secretion system effector, Hcp 7 155 2.0E-32 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_1858 6a366f01dea9f29b07f10c2fb0395016 363 Gene3D G3DSA:3.40.50.300 4 278 1.1E-153 T 14-10-2018 YP_1858 6a366f01dea9f29b07f10c2fb0395016 363 SUPERFAMILY SSF81271 279 359 6.1E-36 T 14-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 YP_1858 6a366f01dea9f29b07f10c2fb0395016 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.9E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_1858 6a366f01dea9f29b07f10c2fb0395016 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.9E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_1858 6a366f01dea9f29b07f10c2fb0395016 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.9E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_1858 6a366f01dea9f29b07f10c2fb0395016 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.9E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_1858 6a366f01dea9f29b07f10c2fb0395016 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 2.1E-39 T 14-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 YP_1858 6a366f01dea9f29b07f10c2fb0395016 363 Gene3D G3DSA:1.10.150.300 120 200 1.1E-153 T 14-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 YP_1858 6a366f01dea9f29b07f10c2fb0395016 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 46.741 T 14-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 YP_1858 6a366f01dea9f29b07f10c2fb0395016 363 Gene3D G3DSA:3.10.20.30 48 362 1.1E-153 T 14-10-2018 IPR012675 Beta-grasp domain superfamily YP_1858 6a366f01dea9f29b07f10c2fb0395016 363 Pfam PF01926 50S ribosome-binding GTPase 5 122 1.7E-21 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_1858 6a366f01dea9f29b07f10c2fb0395016 363 PIRSF PIRSF006641 1 363 2.2E-157 T 14-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 YP_1858 6a366f01dea9f29b07f10c2fb0395016 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 3.0E-174 T 14-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 YP_1858 6a366f01dea9f29b07f10c2fb0395016 363 SUPERFAMILY SSF52540 3 301 4.5E-84 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1537 59bd9ac0ca611ffb57588a143f6b67fb 434 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 73 421 5.7E-100 T 14-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 YP_1537 59bd9ac0ca611ffb57588a143f6b67fb 434 Pfam PF04261 Dyp-type peroxidase family 73 421 1.2E-110 T 14-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 YP_1537 59bd9ac0ca611ffb57588a143f6b67fb 434 SUPERFAMILY SSF54909 66 427 5.01E-98 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel YP_1537 59bd9ac0ca611ffb57588a143f6b67fb 434 TIGRFAM TIGR01412 tat_substr_1: Tat-translocated enzyme 18 433 3.2E-168 T 14-10-2018 IPR006313 Deferrochelatase/peroxidase EfeB GO:0004601|GO:0015684|GO:0020037|GO:0033212 YP_2965 c8b90d05f75810cd41595e52e4cc7d30 412 Pfam PF01966 HD domain 229 310 3.2E-13 T 14-10-2018 IPR006674 HD domain YP_2965 c8b90d05f75810cd41595e52e4cc7d30 412 Gene3D G3DSA:3.30.460.10 1 121 9.0E-27 T 14-10-2018 YP_2965 c8b90d05f75810cd41595e52e4cc7d30 412 SUPERFAMILY SSF81301 1 119 1.09E-29 T 14-10-2018 YP_2965 c8b90d05f75810cd41595e52e4cc7d30 412 SMART SM00471 224 359 5.6E-4 T 14-10-2018 IPR003607 HD/PDEase domain YP_2965 c8b90d05f75810cd41595e52e4cc7d30 412 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 46.604 T 14-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 YP_2965 c8b90d05f75810cd41595e52e4cc7d30 412 PIRSF PIRSF000813 1 408 1.7E-200 T 14-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 YP_2965 c8b90d05f75810cd41595e52e4cc7d30 412 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 211 6.7E-16 T 14-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 YP_2965 c8b90d05f75810cd41595e52e4cc7d30 412 Gene3D G3DSA:1.10.3090.10 122 410 1.8E-45 T 14-10-2018 YP_2965 c8b90d05f75810cd41595e52e4cc7d30 412 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 407 53.042 T 14-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 YP_2965 c8b90d05f75810cd41595e52e4cc7d30 412 SUPERFAMILY SSF81891 120 410 3.27E-58 T 14-10-2018 YP_2965 c8b90d05f75810cd41595e52e4cc7d30 412 Pfam PF01743 Poly A polymerase head domain 3 122 7.1E-17 T 14-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 YP_1946 2fb848b9bc1d3a681f33b86de2866633 239 Gene3D G3DSA:1.10.10.10 1 79 6.4E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1946 2fb848b9bc1d3a681f33b86de2866633 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 5.3E-20 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_1946 2fb848b9bc1d3a681f33b86de2866633 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 2.7E-9 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_1946 2fb848b9bc1d3a681f33b86de2866633 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 2.7E-9 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_1946 2fb848b9bc1d3a681f33b86de2866633 239 Pfam PF07840 FadR C-terminal domain 72 234 3.4E-74 T 14-10-2018 IPR028374 FadR, C-terminal domain GO:0000062|GO:0019217 YP_1946 2fb848b9bc1d3a681f33b86de2866633 239 Gene3D G3DSA:1.20.120.530 80 239 1.9E-43 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_1946 2fb848b9bc1d3a681f33b86de2866633 239 SMART SM00345 12 71 1.0E-22 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_1946 2fb848b9bc1d3a681f33b86de2866633 239 Hamap MF_00696 Fatty acid metabolism regulator protein [fadR]. 1 239 163.765 T 14-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 YP_1946 2fb848b9bc1d3a681f33b86de2866633 239 SUPERFAMILY SSF46785 11 87 2.65E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1946 2fb848b9bc1d3a681f33b86de2866633 239 SUPERFAMILY SSF48008 79 230 3.01E-66 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_1946 2fb848b9bc1d3a681f33b86de2866633 239 TIGRFAM TIGR02812 fadR_gamma: fatty acid metabolism transcriptional regulator FadR 2 236 1.5E-122 T 14-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 YP_2684 7ce421fe399660c1d192bebce94b432b 299 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 7 295 64.855 T 14-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YP_2684 7ce421fe399660c1d192bebce94b432b 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 109 125 2.5E-34 T 14-10-2018 IPR002220 DapA-like GO:0016829 YP_2684 7ce421fe399660c1d192bebce94b432b 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 77 95 2.5E-34 T 14-10-2018 IPR002220 DapA-like GO:0016829 YP_2684 7ce421fe399660c1d192bebce94b432b 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 41 62 2.5E-34 T 14-10-2018 IPR002220 DapA-like GO:0016829 YP_2684 7ce421fe399660c1d192bebce94b432b 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 134 151 2.5E-34 T 14-10-2018 IPR002220 DapA-like GO:0016829 YP_2684 7ce421fe399660c1d192bebce94b432b 299 Gene3D G3DSA:3.20.20.70 6 299 1.3E-112 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_2684 7ce421fe399660c1d192bebce94b432b 299 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 44 61 - T 14-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YP_2684 7ce421fe399660c1d192bebce94b432b 299 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 10 295 8.6E-119 T 14-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YP_2684 7ce421fe399660c1d192bebce94b432b 299 PIRSF PIRSF001365 3 299 9.0E-95 T 14-10-2018 IPR002220 DapA-like GO:0016829 YP_2684 7ce421fe399660c1d192bebce94b432b 299 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 139 169 - T 14-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 YP_2684 7ce421fe399660c1d192bebce94b432b 299 Pfam PF00701 Dihydrodipicolinate synthetase family 8 295 1.2E-113 T 14-10-2018 IPR002220 DapA-like GO:0016829 YP_2684 7ce421fe399660c1d192bebce94b432b 299 SUPERFAMILY SSF51569 4 299 7.75E-99 T 14-10-2018 YP_2684 7ce421fe399660c1d192bebce94b432b 299 SMART SM01130 7 297 5.2E-144 T 14-10-2018 IPR002220 DapA-like GO:0016829 YP_3054 2a54a15b102f3d0fb314ec5ae37d7b15 231 Pfam PF04545 Sigma-70, region 4 180 228 4.5E-13 T 14-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 YP_3054 2a54a15b102f3d0fb314ec5ae37d7b15 231 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 229 1.5E-33 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 YP_3054 2a54a15b102f3d0fb314ec5ae37d7b15 231 SUPERFAMILY SSF88659 93 153 1.13E-12 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_3054 2a54a15b102f3d0fb314ec5ae37d7b15 231 SUPERFAMILY SSF88659 156 230 6.17E-15 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_3054 2a54a15b102f3d0fb314ec5ae37d7b15 231 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 21 229 5.7E-65 T 14-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 YP_3054 2a54a15b102f3d0fb314ec5ae37d7b15 231 Pfam PF04539 Sigma-70 region 3 100 142 1.2E-7 T 14-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 YP_3054 2a54a15b102f3d0fb314ec5ae37d7b15 231 PRINTS PR00046 Major sigma-70 factor signature 201 216 4.5E-7 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_3054 2a54a15b102f3d0fb314ec5ae37d7b15 231 PRINTS PR00046 Major sigma-70 factor signature 184 196 4.5E-7 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_3054 2a54a15b102f3d0fb314ec5ae37d7b15 231 PRINTS PR00046 Major sigma-70 factor signature 216 227 4.5E-7 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_3054 2a54a15b102f3d0fb314ec5ae37d7b15 231 PRINTS PR00046 Major sigma-70 factor signature 47 60 4.5E-7 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_3054 2a54a15b102f3d0fb314ec5ae37d7b15 231 Gene3D G3DSA:1.10.1740.10 9 88 6.4E-17 T 14-10-2018 YP_3054 2a54a15b102f3d0fb314ec5ae37d7b15 231 Pfam PF04542 Sigma-70 region 2 22 92 7.7E-12 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 YP_3054 2a54a15b102f3d0fb314ec5ae37d7b15 231 Gene3D G3DSA:1.20.140.160 90 231 1.6E-34 T 14-10-2018 YP_3054 2a54a15b102f3d0fb314ec5ae37d7b15 231 SUPERFAMILY SSF88946 19 91 1.57E-17 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 YP_0406 b13b9f0036d369934445eb8e8cca0afb 654 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 26 83 8.5E-20 T 14-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 YP_0406 b13b9f0036d369934445eb8e8cca0afb 654 SUPERFAMILY SSF56801 11 645 3.92E-189 T 14-10-2018 YP_0406 b13b9f0036d369934445eb8e8cca0afb 654 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 4 647 53.234 T 14-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 YP_0406 b13b9f0036d369934445eb8e8cca0afb 654 ProSitePatterns PS00455 Putative AMP-binding domain signature. 263 274 - T 14-10-2018 IPR020845 AMP-binding, conserved site YP_0406 b13b9f0036d369934445eb8e8cca0afb 654 Gene3D G3DSA:3.40.50.12780 54 517 1.8E-104 T 14-10-2018 YP_0406 b13b9f0036d369934445eb8e8cca0afb 654 Pfam PF13193 AMP-binding enzyme C-terminal domain 533 611 1.3E-25 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain YP_0406 b13b9f0036d369934445eb8e8cca0afb 654 Pfam PF00501 AMP-binding enzyme 85 524 7.4E-93 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YP_0406 b13b9f0036d369934445eb8e8cca0afb 654 Gene3D G3DSA:3.30.300.30 520 654 6.9E-34 T 14-10-2018 YP_0406 b13b9f0036d369934445eb8e8cca0afb 654 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 23 645 0.0 T 14-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 457 5.4E-30 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 Gene3D G3DSA:3.50.50.60 7 332 6.3E-95 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 Gene3D G3DSA:3.30.390.30 345 464 2.7E-32 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 342 363 3.7E-52 T 14-10-2018 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 263 277 3.7E-52 T 14-10-2018 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 432 452 3.7E-52 T 14-10-2018 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 3.7E-52 T 14-10-2018 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 3.7E-52 T 14-10-2018 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 3.7E-52 T 14-10-2018 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 3.7E-52 T 14-10-2018 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 3.7E-52 T 14-10-2018 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 407 422 3.7E-52 T 14-10-2018 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 Gene3D G3DSA:3.50.50.60 158 276 6.3E-95 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 7.5E-27 T 14-10-2018 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 7.5E-27 T 14-10-2018 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 7.5E-27 T 14-10-2018 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 7.5E-27 T 14-10-2018 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 278 7.5E-27 T 14-10-2018 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 PIRSF PIRSF000350 1 463 1.4E-71 T 14-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 SUPERFAMILY SSF55424 345 463 2.06E-30 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 326 1.4E-59 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 Hamap MF_00247 Soluble pyridine nucleotide transhydrogenase [sthA]. 2 466 66.793 T 14-10-2018 IPR022962 Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0055114 KEGG: 00760+1.6.1.1|MetaCyc: PWY-5083 YP_3134 b575532597b8ef84ae3f564c1c9bbd41 466 SUPERFAMILY SSF51905 1 322 1.04E-57 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3554 415d16a9a0a6cdcfc6537c466633e842 368 SUPERFAMILY SSF50331 236 358 6.32E-28 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YP_3554 415d16a9a0a6cdcfc6537c466633e842 368 Pfam PF08402 TOBE domain 281 352 6.1E-5 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YP_3554 415d16a9a0a6cdcfc6537c466633e842 368 SUPERFAMILY SSF52540 4 243 1.58E-86 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3554 415d16a9a0a6cdcfc6537c466633e842 368 Gene3D G3DSA:2.40.50.140 288 344 4.1E-32 T 14-10-2018 YP_3554 415d16a9a0a6cdcfc6537c466633e842 368 Gene3D G3DSA:3.40.50.300 3 221 7.9E-67 T 14-10-2018 YP_3554 415d16a9a0a6cdcfc6537c466633e842 368 Pfam PF00005 ABC transporter 19 161 5.0E-34 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3554 415d16a9a0a6cdcfc6537c466633e842 368 Gene3D G3DSA:2.40.50.940 222 353 4.1E-32 T 14-10-2018 YP_3554 415d16a9a0a6cdcfc6537c466633e842 368 SMART SM00382 28 211 6.8E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3554 415d16a9a0a6cdcfc6537c466633e842 368 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3112 3122d49df73954aa91c8d607ffb1baa0 165 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 14-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_3112 3122d49df73954aa91c8d607ffb1baa0 165 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 162 26.403 T 14-10-2018 IPR022973 Ribosomal protein L10 YP_3112 3122d49df73954aa91c8d607ffb1baa0 165 SUPERFAMILY SSF160369 4 162 4.71E-48 T 14-10-2018 YP_3112 3122d49df73954aa91c8d607ffb1baa0 165 Gene3D G3DSA:3.30.70.1730 1 126 4.2E-35 T 14-10-2018 YP_3112 3122d49df73954aa91c8d607ffb1baa0 165 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 78 157 6.0E-4 T 14-10-2018 YP_3112 3122d49df73954aa91c8d607ffb1baa0 165 Pfam PF00466 Ribosomal protein L10 6 101 1.6E-25 T 14-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 YP_pMT098 d33969bfcc65d5cba226fde5b67c9255 76 ProDom PD028015 PLASMID YKFF YDEA R0111 YPJI YPMT1.60C C4569 AEC70 PSLT067 YFJA 5 76 2.0E-37 T 14-10-2018 IPR009253 Protein of unknown function DUF905 YP_pMT098 d33969bfcc65d5cba226fde5b67c9255 76 Gene3D G3DSA:3.30.160.130 2 76 2.3E-35 T 14-10-2018 IPR038612 YkfF-like domain superfamily YP_pMT098 d33969bfcc65d5cba226fde5b67c9255 76 SUPERFAMILY SSF54786 12 74 9.42E-30 T 14-10-2018 YP_pMT098 d33969bfcc65d5cba226fde5b67c9255 76 Pfam PF06006 Bacterial protein of unknown function (DUF905) 7 74 4.8E-43 T 14-10-2018 IPR009253 Protein of unknown function DUF905 YP_0304 a310c939128994d3c44e20d103ce30c4 921 SUPERFAMILY SSF158472 199 248 2.22E-5 T 14-10-2018 YP_0304 a310c939128994d3c44e20d103ce30c4 921 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 403 518 2.5E-27 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0304 a310c939128994d3c44e20d103ce30c4 921 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 458 8.4E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0304 a310c939128994d3c44e20d103ce30c4 921 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 472 8.4E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0304 a310c939128994d3c44e20d103ce30c4 921 PRINTS PR00344 Bacterial sensor protein C-terminal signature 479 497 8.4E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0304 a310c939128994d3c44e20d103ce30c4 921 PRINTS PR00344 Bacterial sensor protein C-terminal signature 503 516 8.4E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0304 a310c939128994d3c44e20d103ce30c4 921 Gene3D G3DSA:1.20.1480.50 165 253 1.4E-8 T 14-10-2018 YP_0304 a310c939128994d3c44e20d103ce30c4 921 SUPERFAMILY SSF55874 345 517 1.15E-43 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0304 a310c939128994d3c44e20d103ce30c4 921 SUPERFAMILY SSF47384 277 357 3.14E-21 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_0304 a310c939128994d3c44e20d103ce30c4 921 SMART SM00387 403 519 1.7E-34 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0304 a310c939128994d3c44e20d103ce30c4 921 SUPERFAMILY SSF52172 534 647 2.05E-5 T 14-10-2018 IPR011006 CheY-like superfamily YP_0304 a310c939128994d3c44e20d103ce30c4 921 Gene3D G3DSA:3.40.50.2300 650 789 1.8E-33 T 14-10-2018 YP_0304 a310c939128994d3c44e20d103ce30c4 921 Pfam PF00072 Response regulator receiver domain 670 781 7.7E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0304 a310c939128994d3c44e20d103ce30c4 921 SMART SM00073 819 915 7.9E-4 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 YP_0304 a310c939128994d3c44e20d103ce30c4 921 Pfam PF01627 Hpt domain 829 910 7.6E-11 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 YP_0304 a310c939128994d3c44e20d103ce30c4 921 SMART SM00304 199 251 1.7E-7 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_0304 a310c939128994d3c44e20d103ce30c4 921 Pfam PF00512 His Kinase A (phospho-acceptor) domain 292 355 1.3E-18 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0304 a310c939128994d3c44e20d103ce30c4 921 Gene3D G3DSA:3.30.565.10 357 523 1.6E-47 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0304 a310c939128994d3c44e20d103ce30c4 921 SMART SM00388 291 356 2.3E-21 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0304 a310c939128994d3c44e20d103ce30c4 921 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 31 176 1.5E-56 T 14-10-2018 IPR019247 Histidine kinase BarA, N-terminal YP_0304 a310c939128994d3c44e20d103ce30c4 921 SUPERFAMILY SSF52172 668 786 1.71E-31 T 14-10-2018 IPR011006 CheY-like superfamily YP_0304 a310c939128994d3c44e20d103ce30c4 921 SMART SM00448 668 781 4.1E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0304 a310c939128994d3c44e20d103ce30c4 921 Gene3D G3DSA:1.20.120.160 808 919 5.0E-27 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 YP_0304 a310c939128994d3c44e20d103ce30c4 921 Gene3D G3DSA:1.10.287.130 254 354 1.6E-28 T 14-10-2018 YP_0304 a310c939128994d3c44e20d103ce30c4 921 SUPERFAMILY SSF47226 764 910 5.89E-21 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 YP_1220 71650d33ed8e63206e675c366046e9ee 594 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 27 562 5.0E-207 T 14-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 YP_1220 71650d33ed8e63206e675c366046e9ee 594 SMART SM00382 381 566 2.2E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1220 71650d33ed8e63206e675c366046e9ee 594 SUPERFAMILY SSF52540 369 588 2.08E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1220 71650d33ed8e63206e675c366046e9ee 594 ProSitePatterns PS00211 ABC transporters family signature. 492 506 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1220 71650d33ed8e63206e675c366046e9ee 594 Gene3D G3DSA:1.20.1560.10 2 340 9.4E-49 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_1220 71650d33ed8e63206e675c366046e9ee 594 Gene3D G3DSA:3.40.50.300 343 593 5.1E-69 T 14-10-2018 YP_1220 71650d33ed8e63206e675c366046e9ee 594 Pfam PF00664 ABC transporter transmembrane region 32 297 2.9E-38 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YP_1220 71650d33ed8e63206e675c366046e9ee 594 Pfam PF00005 ABC transporter 375 520 4.0E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1220 71650d33ed8e63206e675c366046e9ee 594 SUPERFAMILY SSF90123 17 335 3.4E-54 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_3168 d55f96eb9d83d2c2d13a828765436c44 243 Gene3D G3DSA:2.60.40.10 30 149 3.1E-40 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3168 d55f96eb9d83d2c2d13a828765436c44 243 Gene3D G3DSA:2.60.40.10 152 243 1.9E-16 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3168 d55f96eb9d83d2c2d13a828765436c44 243 SUPERFAMILY SSF49584 143 239 3.4E-14 T 14-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_3168 d55f96eb9d83d2c2d13a828765436c44 243 SUPERFAMILY SSF49354 23 149 3.92E-42 T 14-10-2018 IPR008962 PapD-like superfamily YP_3168 d55f96eb9d83d2c2d13a828765436c44 243 PRINTS PR00969 Pili chaperone signature 131 146 2.4E-27 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3168 d55f96eb9d83d2c2d13a828765436c44 243 PRINTS PR00969 Pili chaperone signature 29 38 2.4E-27 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3168 d55f96eb9d83d2c2d13a828765436c44 243 PRINTS PR00969 Pili chaperone signature 78 99 2.4E-27 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3168 d55f96eb9d83d2c2d13a828765436c44 243 PRINTS PR00969 Pili chaperone signature 106 123 2.4E-27 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3168 d55f96eb9d83d2c2d13a828765436c44 243 PRINTS PR00969 Pili chaperone signature 170 185 2.4E-27 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3168 d55f96eb9d83d2c2d13a828765436c44 243 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 176 237 6.9E-14 T 14-10-2018 IPR016148 Pili assembly chaperone, C-terminal YP_3168 d55f96eb9d83d2c2d13a828765436c44 243 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 29 149 6.2E-42 T 14-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YP_2315 c92be8660117b20c2be229f2a6b93bea 496 Pfam PF00005 ABC transporter 274 423 1.2E-17 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2315 c92be8660117b20c2be229f2a6b93bea 496 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2315 c92be8660117b20c2be229f2a6b93bea 496 Pfam PF00005 ABC transporter 20 170 1.9E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2315 c92be8660117b20c2be229f2a6b93bea 496 SUPERFAMILY SSF52540 272 485 1.57E-45 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2315 c92be8660117b20c2be229f2a6b93bea 496 SMART SM00382 29 217 1.7E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2315 c92be8660117b20c2be229f2a6b93bea 496 SMART SM00382 279 480 1.1E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2315 c92be8660117b20c2be229f2a6b93bea 496 Gene3D G3DSA:3.40.50.300 248 491 1.6E-41 T 14-10-2018 YP_2315 c92be8660117b20c2be229f2a6b93bea 496 Gene3D G3DSA:3.40.50.300 1 245 1.1E-55 T 14-10-2018 YP_2315 c92be8660117b20c2be229f2a6b93bea 496 SUPERFAMILY SSF52540 3 227 9.76E-59 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1222 2fcd335ecc8b53c70d0ee8b3a57d62ab 244 Gene3D G3DSA:3.40.630.70 70 243 1.1E-69 T 14-10-2018 YP_1222 2fcd335ecc8b53c70d0ee8b3a57d62ab 244 SUPERFAMILY SSF55729 11 237 1.32E-94 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_1222 2fcd335ecc8b53c70d0ee8b3a57d62ab 244 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 244 96.06 T 14-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 YP_1222 2fcd335ecc8b53c70d0ee8b3a57d62ab 244 Gene3D G3DSA:2.30.210.20 10 69 3.3E-26 T 14-10-2018 YP_1222 2fcd335ecc8b53c70d0ee8b3a57d62ab 244 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 47 222 1.8E-76 T 14-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 YP_1222 2fcd335ecc8b53c70d0ee8b3a57d62ab 244 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 45 211 2.2E-73 T 14-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 YP_3035 0ff635671c3af4b0360eb8493163b97c 141 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 7 139 2.2E-40 T 14-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 YP_3035 0ff635671c3af4b0360eb8493163b97c 141 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 14-10-2018 IPR019776 Flagellar basal body rod protein, conserved site YP_3035 0ff635671c3af4b0360eb8493163b97c 141 Pfam PF00460 Flagella basal body rod protein 8 31 4.8E-8 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YP_3035 0ff635671c3af4b0360eb8493163b97c 141 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 94 138 1.6E-9 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_0183 2e57084693774a09201c9463ee71007f 284 Gene3D G3DSA:1.10.3720.10 78 277 6.0E-30 T 14-10-2018 IPR035906 MetI-like superfamily YP_0183 2e57084693774a09201c9463ee71007f 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 278 2.6E-25 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_0183 2e57084693774a09201c9463ee71007f 284 SUPERFAMILY SSF161098 84 266 3.27E-36 T 14-10-2018 IPR035906 MetI-like superfamily YP_pCD82 92e5c7e7592f969b3573e2f90d48d2a0 130 Gene3D G3DSA:3.30.1460.10 1 130 1.3E-55 T 14-10-2018 YP_pCD82 92e5c7e7592f969b3573e2f90d48d2a0 130 PIRSF PIRSF011271 1 120 2.8E-63 T 14-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 YP_pCD82 92e5c7e7592f969b3573e2f90d48d2a0 130 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 99 117 2.3E-59 T 14-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 YP_pCD82 92e5c7e7592f969b3573e2f90d48d2a0 130 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 29 50 2.3E-59 T 14-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 YP_pCD82 92e5c7e7592f969b3573e2f90d48d2a0 130 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 4 27 2.3E-59 T 14-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 YP_pCD82 92e5c7e7592f969b3573e2f90d48d2a0 130 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 62 78 2.3E-59 T 14-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 YP_pCD82 92e5c7e7592f969b3573e2f90d48d2a0 130 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 81 99 2.3E-59 T 14-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 YP_pCD82 92e5c7e7592f969b3573e2f90d48d2a0 130 Pfam PF05932 Tir chaperone protein (CesT) family 6 118 1.5E-24 T 14-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 YP_pCD82 92e5c7e7592f969b3573e2f90d48d2a0 130 SUPERFAMILY SSF69635 3 129 5.89E-45 T 14-10-2018 YP_0843 4f97295b59848490394b745bd61fa45d 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 7.8E-20 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0843 4f97295b59848490394b745bd61fa45d 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 7.8E-20 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0843 4f97295b59848490394b745bd61fa45d 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 7.8E-20 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0843 4f97295b59848490394b745bd61fa45d 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 7.8E-20 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0843 4f97295b59848490394b745bd61fa45d 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 7.8E-20 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0843 4f97295b59848490394b745bd61fa45d 258 Gene3D G3DSA:3.40.50.720 2 244 3.7E-61 T 14-10-2018 YP_0843 4f97295b59848490394b745bd61fa45d 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 3.4E-5 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0843 4f97295b59848490394b745bd61fa45d 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 3.4E-5 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0843 4f97295b59848490394b745bd61fa45d 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 3.4E-5 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_0843 4f97295b59848490394b745bd61fa45d 258 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 182 0.0064 T 14-10-2018 YP_0843 4f97295b59848490394b745bd61fa45d 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YP_0843 4f97295b59848490394b745bd61fa45d 258 SUPERFAMILY SSF51735 3 254 1.58E-57 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0843 4f97295b59848490394b745bd61fa45d 258 Pfam PF00106 short chain dehydrogenase 3 191 2.9E-43 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_3653 6eb2b498455d7d4445ece88759d2a9ae 393 Gene3D G3DSA:1.20.1250.20 207 392 1.1E-18 T 14-10-2018 YP_3653 6eb2b498455d7d4445ece88759d2a9ae 393 Gene3D G3DSA:1.20.1250.20 11 199 9.6E-21 T 14-10-2018 YP_3653 6eb2b498455d7d4445ece88759d2a9ae 393 TIGRFAM TIGR00899 2A0120: sugar efflux transporter 17 391 2.2E-159 T 14-10-2018 IPR004750 Sugar efflux GO:0005351|GO:0008643|GO:0016021 YP_3653 6eb2b498455d7d4445ece88759d2a9ae 393 SUPERFAMILY SSF103473 10 390 2.88E-48 T 14-10-2018 IPR036259 MFS transporter superfamily YP_3653 6eb2b498455d7d4445ece88759d2a9ae 393 Pfam PF07690 Major Facilitator Superfamily 19 346 1.1E-31 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_2413 179d89482a4f7fd9979e26d73a1aa9ff 333 Gene3D G3DSA:3.40.50.150 132 300 1.8E-44 T 14-10-2018 YP_2413 179d89482a4f7fd9979e26d73a1aa9ff 333 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 36 318 1.4E-136 T 14-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 YP_2413 179d89482a4f7fd9979e26d73a1aa9ff 333 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 29 323 53.115 T 14-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 YP_2413 179d89482a4f7fd9979e26d73a1aa9ff 333 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 38 324 1.2E-99 T 14-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 YP_2413 179d89482a4f7fd9979e26d73a1aa9ff 333 SUPERFAMILY SSF53335 38 317 4.56E-49 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_2413 179d89482a4f7fd9979e26d73a1aa9ff 333 PIRSF PIRSF037167 17 330 2.3E-147 T 14-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 YP_2413 179d89482a4f7fd9979e26d73a1aa9ff 333 Pfam PF05175 Methyltransferase small domain 156 238 1.5E-15 T 14-10-2018 IPR007848 Methyltransferase small domain GO:0008168 YP_2413 179d89482a4f7fd9979e26d73a1aa9ff 333 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 227 233 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 14 384 6.9E-150 T 14-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 Pfam PF00117 Glutamine amidotransferase class-I 206 381 5.5E-48 T 14-10-2018 IPR017926 Glutamine amidotransferase YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 14 141 7.8E-52 T 14-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 SUPERFAMILY SSF52317 162 387 9.32E-63 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 Gene3D G3DSA:3.40.50.880 161 388 5.2E-76 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 SUPERFAMILY SSF52021 12 152 7.59E-57 T 14-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 315 326 1.1E-40 T 14-10-2018 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 273 289 1.1E-40 T 14-10-2018 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 242 256 1.1E-40 T 14-10-2018 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 290 307 1.1E-40 T 14-10-2018 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 203 217 1.1E-40 T 14-10-2018 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 PRINTS PR00097 Anthranilate synthase component II signature 358 371 1.3E-5 T 14-10-2018 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 PRINTS PR00097 Anthranilate synthase component II signature 245 254 1.3E-5 T 14-10-2018 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 PRINTS PR00097 Anthranilate synthase component II signature 273 284 1.3E-5 T 14-10-2018 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 PRINTS PR00096 Glutamine amidotransferase superfamily signature 273 284 3.6E-11 T 14-10-2018 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 PRINTS PR00096 Glutamine amidotransferase superfamily signature 358 371 3.6E-11 T 14-10-2018 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 PRINTS PR00096 Glutamine amidotransferase superfamily signature 245 254 3.6E-11 T 14-10-2018 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 Gene3D G3DSA:3.50.30.20 11 160 2.7E-61 T 14-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 12 387 48.505 T 14-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3698 ce4c174d23c75a9ee8419302bc81981c 400 SMART SM01097 12 142 1.2E-90 T 14-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3725 d396cd85d815ba09f49e0b91eed6ec93 238 Pfam PF00072 Response regulator receiver domain 6 113 6.6E-27 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_3725 d396cd85d815ba09f49e0b91eed6ec93 238 SUPERFAMILY SSF46894 137 234 3.12E-21 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_3725 d396cd85d815ba09f49e0b91eed6ec93 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 232 7.3E-18 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_3725 d396cd85d815ba09f49e0b91eed6ec93 238 Gene3D G3DSA:1.10.10.10 124 236 9.0E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3725 d396cd85d815ba09f49e0b91eed6ec93 238 SMART SM00862 156 232 2.1E-14 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_3725 d396cd85d815ba09f49e0b91eed6ec93 238 SMART SM00448 4 114 4.5E-38 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_3725 d396cd85d815ba09f49e0b91eed6ec93 238 SUPERFAMILY SSF52172 2 127 8.4E-36 T 14-10-2018 IPR011006 CheY-like superfamily YP_3725 d396cd85d815ba09f49e0b91eed6ec93 238 Gene3D G3DSA:3.40.50.2300 1 123 2.0E-32 T 14-10-2018 YP_0493 74925296c608402b01192e65f8c15aec 856 SMART SM01276 35 338 6.7E-54 T 14-10-2018 IPR031161 Peptidase family M60 domain YP_0493 74925296c608402b01192e65f8c15aec 856 Pfam PF13402 Peptidase M60, enhancin and enhancin-like 121 361 2.5E-12 T 14-10-2018 IPR031161 Peptidase family M60 domain YP_0493 74925296c608402b01192e65f8c15aec 856 Pfam PF03272 Putative mucin or carbohydrate-binding module 736 852 2.8E-28 T 14-10-2018 IPR004954 Putative mucin/carbohydrate-binding domain YP_0493 74925296c608402b01192e65f8c15aec 856 Pfam PF03272 Putative mucin or carbohydrate-binding module 541 652 9.6E-30 T 14-10-2018 IPR004954 Putative mucin/carbohydrate-binding domain YP_3315 86cf76bfffc5aa017a309195a446556e 167 SUPERFAMILY SSF52540 3 165 2.47E-28 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3315 86cf76bfffc5aa017a309195a446556e 167 Pfam PF01202 Shikimate kinase 12 165 1.1E-14 T 14-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YP_3315 86cf76bfffc5aa017a309195a446556e 167 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 6 163 3.6E-65 T 14-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 YP_3315 86cf76bfffc5aa017a309195a446556e 167 Gene3D G3DSA:3.40.50.300 2 167 7.4E-68 T 14-10-2018 YP_3315 86cf76bfffc5aa017a309195a446556e 167 PRINTS PR01100 Shikimate kinase family signature 100 117 5.6E-6 T 14-10-2018 YP_3315 86cf76bfffc5aa017a309195a446556e 167 PRINTS PR01100 Shikimate kinase family signature 6 21 5.6E-6 T 14-10-2018 YP_4023 f35b1ffcc90aedcfc3c7ce972752b57b 320 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 26 313 5.7E-94 T 14-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 YP_4023 f35b1ffcc90aedcfc3c7ce972752b57b 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 310 3.1E-18 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_4023 f35b1ffcc90aedcfc3c7ce972752b57b 320 SUPERFAMILY SSF161098 31 306 6.32E-34 T 14-10-2018 IPR035906 MetI-like superfamily YP_4023 f35b1ffcc90aedcfc3c7ce972752b57b 320 Gene3D G3DSA:1.10.3720.10 73 318 8.0E-33 T 14-10-2018 IPR035906 MetI-like superfamily YP_0412 42815b59139c45c61689ed9295d0d68c 73 TIGRFAM TIGR02501 type_III_yscE: type III secretion system protein, YseE family 4 70 4.7E-25 T 14-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 YP_0412 42815b59139c45c61689ed9295d0d68c 73 Pfam PF08988 Type III secretion system, cytoplasmic E component of needle 4 69 3.2E-24 T 14-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 YP_0056 6ccdee622d015a53e7c698370295ef9c 461 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 69 247 2.9E-66 T 14-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 YP_0056 6ccdee622d015a53e7c698370295ef9c 461 Gene3D G3DSA:3.40.50.2000 253 439 4.5E-66 T 14-10-2018 YP_0056 6ccdee622d015a53e7c698370295ef9c 461 SUPERFAMILY SSF53756 93 456 1.36E-16 T 14-10-2018 YP_0056 6ccdee622d015a53e7c698370295ef9c 461 Gene3D G3DSA:3.40.50.11720 77 245 1.7E-47 T 14-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 YP_0056 6ccdee622d015a53e7c698370295ef9c 461 Pfam PF00534 Glycosyl transferases group 1 324 434 2.4E-10 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 YP_1686 83ae588b10f82e5521806fef31f7d46f 175 PIRSF PIRSF017018 1 175 1.3E-73 T 14-10-2018 IPR018470 Periplasmic metal-binding protein Tp34-type YP_1686 83ae588b10f82e5521806fef31f7d46f 175 Gene3D G3DSA:2.60.40.2480 23 175 1.3E-77 T 14-10-2018 IPR038482 Periplasmic metal-binding protein tp34-type superfamily YP_1686 83ae588b10f82e5521806fef31f7d46f 175 Pfam PF10634 Fe2+ transport protein 25 173 4.2E-70 T 14-10-2018 IPR018470 Periplasmic metal-binding protein Tp34-type YP_1406 a9ed51dd8601f6987c44fd6a316343ba 418 SUPERFAMILY SSF51004 16 319 4.71E-9 T 14-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily YP_1406 a9ed51dd8601f6987c44fd6a316343ba 418 Pfam PF08309 LVIVD repeat 222 250 0.35 T 14-10-2018 IPR013211 LVIVD YP_2334 a84f7f82b9387fc9b1b2c19852ebfa94 471 Pfam PF00501 AMP-binding enzyme 16 365 5.5E-51 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YP_2334 a84f7f82b9387fc9b1b2c19852ebfa94 471 ProSitePatterns PS00455 Putative AMP-binding domain signature. 148 159 - T 14-10-2018 IPR020845 AMP-binding, conserved site YP_2334 a84f7f82b9387fc9b1b2c19852ebfa94 471 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 35 455 4.6E-117 T 14-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 YP_2334 a84f7f82b9387fc9b1b2c19852ebfa94 471 SUPERFAMILY SSF56801 11 462 6.93E-92 T 14-10-2018 YP_2334 a84f7f82b9387fc9b1b2c19852ebfa94 471 Gene3D G3DSA:3.40.50.12780 13 364 3.2E-65 T 14-10-2018 YP_2334 a84f7f82b9387fc9b1b2c19852ebfa94 471 Gene3D G3DSA:3.30.300.30 366 464 1.2E-13 T 14-10-2018 YP_0740 a3edcc49e3e08b50ac38c673e0da7702 374 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 368 3.3E-190 T 14-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 YP_0740 a3edcc49e3e08b50ac38c673e0da7702 374 Gene3D G3DSA:3.20.20.105 1 367 2.2E-170 T 14-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 YP_0740 a3edcc49e3e08b50ac38c673e0da7702 374 Pfam PF01702 Queuine tRNA-ribosyltransferase 126 361 2.1E-93 T 14-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 YP_0740 a3edcc49e3e08b50ac38c673e0da7702 374 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 367 1.4E-179 T 14-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 YP_0740 a3edcc49e3e08b50ac38c673e0da7702 374 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 364 57.422 T 14-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 YP_0740 a3edcc49e3e08b50ac38c673e0da7702 374 SUPERFAMILY SSF51713 2 364 2.88E-163 T 14-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 YP_2589 6f5d0052d6bb3b5bd59b027575b5472d 282 Pfam PF13988 Protein of unknown function (DUF4225) 91 255 5.4E-57 T 14-10-2018 IPR025320 Protein of unknown function DUF4225 YP_1683 0b6984d117f17763a181aa2688815128 546 Gene3D G3DSA:1.20.1250.20 13 200 4.4E-24 T 14-10-2018 YP_1683 0b6984d117f17763a181aa2688815128 546 SUPERFAMILY SSF103473 16 439 3.27E-47 T 14-10-2018 IPR036259 MFS transporter superfamily YP_1683 0b6984d117f17763a181aa2688815128 546 Pfam PF07690 Major Facilitator Superfamily 23 430 2.4E-41 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_1683 0b6984d117f17763a181aa2688815128 546 Gene3D G3DSA:1.20.1250.20 278 451 8.2E-14 T 14-10-2018 YP_2794 be82f15e94e118d9b0e5b060f837ec00 262 Gene3D G3DSA:2.160.10.10 1 196 1.5E-50 T 14-10-2018 YP_2794 be82f15e94e118d9b0e5b060f837ec00 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 5 262 47.811 T 14-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 YP_2794 be82f15e94e118d9b0e5b060f837ec00 262 PIRSF PIRSF000456 4 262 2.5E-105 T 14-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 YP_2794 be82f15e94e118d9b0e5b060f837ec00 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 20 48 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YP_2794 be82f15e94e118d9b0e5b060f837ec00 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 8 260 1.0E-107 T 14-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 YP_2794 be82f15e94e118d9b0e5b060f837ec00 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 17 52 2.4E-7 T 14-10-2018 IPR001451 Hexapeptide repeat YP_2794 be82f15e94e118d9b0e5b060f837ec00 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 1.5E-6 T 14-10-2018 IPR001451 Hexapeptide repeat YP_2794 be82f15e94e118d9b0e5b060f837ec00 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 153 181 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YP_2794 be82f15e94e118d9b0e5b060f837ec00 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 180 261 3.6E-28 T 14-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 YP_2794 be82f15e94e118d9b0e5b060f837ec00 262 Gene3D G3DSA:1.20.1180.10 197 262 8.4E-27 T 14-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 YP_2794 be82f15e94e118d9b0e5b060f837ec00 262 SUPERFAMILY SSF51161 2 262 1.36E-76 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily YP_0937 0db67984d2082000e799de600c480b33 444 Gene3D G3DSA:1.20.1740.10 2 441 2.9E-73 T 14-10-2018 YP_0937 0db67984d2082000e799de600c480b33 444 Pfam PF13520 Amino acid permease 10 401 9.0E-49 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_0937 0db67984d2082000e799de600c480b33 444 PIRSF PIRSF006060 1 431 2.0E-61 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_0092 f26568ef53ad699e5433a451d5b3e1fe 248 SUPERFAMILY SSF52343 104 248 1.57E-38 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_0092 f26568ef53ad699e5433a451d5b3e1fe 248 Gene3D G3DSA:3.40.50.80 97 248 3.6E-41 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_0092 f26568ef53ad699e5433a451d5b3e1fe 248 Gene3D G3DSA:2.40.30.10 1 96 7.7E-30 T 14-10-2018 YP_0092 f26568ef53ad699e5433a451d5b3e1fe 248 Pfam PF00970 Oxidoreductase FAD-binding domain 19 90 1.2E-7 T 14-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 YP_0092 f26568ef53ad699e5433a451d5b3e1fe 248 SUPERFAMILY SSF63380 3 99 8.78E-23 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YP_0092 f26568ef53ad699e5433a451d5b3e1fe 248 Pfam PF00175 Oxidoreductase NAD-binding domain 111 222 1.9E-19 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 YP_3300 300c5e8a2bcaa9e223613a361291f7fe 839 PIRSF PIRSF000460 22 839 1.3E-231 T 14-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 YP_3300 300c5e8a2bcaa9e223613a361291f7fe 839 Pfam PF00343 Carbohydrate phosphorylase 126 834 0.0 T 14-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 YP_3300 300c5e8a2bcaa9e223613a361291f7fe 839 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 38 834 0.0 T 14-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 YP_3300 300c5e8a2bcaa9e223613a361291f7fe 839 Gene3D G3DSA:3.40.50.2000 496 819 2.3E-148 T 14-10-2018 YP_3300 300c5e8a2bcaa9e223613a361291f7fe 839 SUPERFAMILY SSF53756 36 838 0.0 T 14-10-2018 YP_3300 300c5e8a2bcaa9e223613a361291f7fe 839 Gene3D G3DSA:3.40.50.2000 30 495 8.8E-207 T 14-10-2018 YP_3300 300c5e8a2bcaa9e223613a361291f7fe 839 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 678 690 - T 14-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 YP_0146 7b78db8a6bc37e8184a63d589b1355f9 851 Gene3D G3DSA:3.40.710.10 243 377 3.3E-10 T 14-10-2018 YP_0146 7b78db8a6bc37e8184a63d589b1355f9 851 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 65 785 4.1E-172 T 14-10-2018 YP_0146 7b78db8a6bc37e8184a63d589b1355f9 851 SUPERFAMILY SSF53955 43 257 6.47E-80 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_0146 7b78db8a6bc37e8184a63d589b1355f9 851 Gene3D G3DSA:1.10.3810.10 48 242 5.8E-80 T 14-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_0146 7b78db8a6bc37e8184a63d589b1355f9 851 Pfam PF17092 Penicillin-binding protein OB-like domain 316 425 4.5E-31 T 14-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_0146 7b78db8a6bc37e8184a63d589b1355f9 851 Pfam PF00905 Penicillin binding protein transpeptidase domain 429 610 4.4E-25 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 YP_0146 7b78db8a6bc37e8184a63d589b1355f9 851 SUPERFAMILY SSF56601 211 833 3.5E-114 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YP_0146 7b78db8a6bc37e8184a63d589b1355f9 851 Pfam PF00912 Transglycosylase 55 229 4.7E-65 T 14-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_0146 7b78db8a6bc37e8184a63d589b1355f9 851 Gene3D G3DSA:3.40.710.10 399 614 1.3E-67 T 14-10-2018 YP_0146 7b78db8a6bc37e8184a63d589b1355f9 851 Gene3D G3DSA:3.40.710.10 636 836 7.3E-25 T 14-10-2018 YP_2639 bd6b4657198711e60e3dc24f8841f69d 345 Gene3D G3DSA:3.40.190.10 127 338 4.6E-121 T 14-10-2018 YP_2639 bd6b4657198711e60e3dc24f8841f69d 345 Gene3D G3DSA:3.40.190.10 39 308 4.6E-121 T 14-10-2018 YP_2639 bd6b4657198711e60e3dc24f8841f69d 345 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 27 339 8.3E-159 T 14-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 YP_2639 bd6b4657198711e60e3dc24f8841f69d 345 Pfam PF13531 Bacterial extracellular solute-binding protein 48 293 2.7E-41 T 14-10-2018 YP_2639 bd6b4657198711e60e3dc24f8841f69d 345 SUPERFAMILY SSF53850 32 339 1.41E-78 T 14-10-2018 YP_1592 d9d1a47dc41fdebc168439146930edcf 225 Pfam PF13861 FlgD Tudor-like domain 84 222 4.6E-16 T 14-10-2018 IPR025963 FlgD Tudor-like domain YP_1592 d9d1a47dc41fdebc168439146930edcf 225 Gene3D G3DSA:2.30.30.910 85 219 5.6E-35 T 14-10-2018 YP_1592 d9d1a47dc41fdebc168439146930edcf 225 Pfam PF13860 FlgD Ig-like domain 114 183 6.7E-24 T 14-10-2018 IPR025965 FlgD Ig-like domain YP_1592 d9d1a47dc41fdebc168439146930edcf 225 Pfam PF03963 Flagellar hook capping protein - N-terminal region 8 75 6.9E-24 T 14-10-2018 IPR005648 Flagellar hook capping protein YP_1592 d9d1a47dc41fdebc168439146930edcf 225 Gene3D G3DSA:2.60.40.4070 101 191 5.6E-35 T 14-10-2018 YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 96 420 6.0E-135 T 14-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 SMART SM00387 313 425 1.2E-36 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 Gene3D G3DSA:3.30.565.10 277 425 2.2E-38 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 Pfam PF11808 Domain of unknown function (DUF3329) 6 91 2.0E-28 T 14-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 SUPERFAMILY SSF47384 190 268 4.51E-20 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 Gene3D G3DSA:1.10.287.130 200 269 3.7E-23 T 14-10-2018 YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 SUPERFAMILY SSF55785 87 195 1.03E-12 T 14-10-2018 IPR035965 PAS domain superfamily YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 313 423 4.9E-24 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 2.0E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 2.0E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 2.0E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 422 2.0E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 Gene3D G3DSA:3.30.450.20 86 199 4.0E-9 T 14-10-2018 YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 98 211 7.4E-9 T 14-10-2018 IPR000014 PAS domain YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 Pfam PF00512 His Kinase A (phospho-acceptor) domain 203 268 1.9E-18 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 Pfam PF00989 PAS fold 99 193 3.9E-9 T 14-10-2018 IPR013767 PAS fold GO:0006355 YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 SMART SM00388 203 269 3.0E-22 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 SUPERFAMILY SSF55874 259 423 6.02E-42 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0728 a9a18b6d56498b82c11dd104676a9ee7 438 SMART SM00091 98 165 1.5E-7 T 14-10-2018 IPR000014 PAS domain YP_0413 b782d5b08c98f3057a93577ae8222cf5 235 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 215 231 4.3E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_0413 b782d5b08c98f3057a93577ae8222cf5 235 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 200 215 4.3E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_0413 b782d5b08c98f3057a93577ae8222cf5 235 Gene3D G3DSA:1.10.10.60 131 233 1.3E-25 T 14-10-2018 YP_0413 b782d5b08c98f3057a93577ae8222cf5 235 Pfam PF12833 Helix-turn-helix domain 154 231 1.4E-22 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_0413 b782d5b08c98f3057a93577ae8222cf5 235 SUPERFAMILY SSF46689 185 232 4.17E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0413 b782d5b08c98f3057a93577ae8222cf5 235 SMART SM00342 148 231 5.6E-22 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_3076 47f5265ac074807bb1422c1a1af57ff4 403 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 140 157 - T 14-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 YP_3076 47f5265ac074807bb1422c1a1af57ff4 403 Gene3D G3DSA:3.40.190.10 145 395 4.3E-146 T 14-10-2018 YP_3076 47f5265ac074807bb1422c1a1af57ff4 403 PRINTS PR00181 Maltose binding protein signature 43 61 2.9E-90 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YP_3076 47f5265ac074807bb1422c1a1af57ff4 403 PRINTS PR00181 Maltose binding protein signature 158 177 2.9E-90 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YP_3076 47f5265ac074807bb1422c1a1af57ff4 403 PRINTS PR00181 Maltose binding protein signature 240 259 2.9E-90 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YP_3076 47f5265ac074807bb1422c1a1af57ff4 403 PRINTS PR00181 Maltose binding protein signature 77 95 2.9E-90 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YP_3076 47f5265ac074807bb1422c1a1af57ff4 403 PRINTS PR00181 Maltose binding protein signature 178 197 2.9E-90 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YP_3076 47f5265ac074807bb1422c1a1af57ff4 403 PRINTS PR00181 Maltose binding protein signature 306 327 2.9E-90 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YP_3076 47f5265ac074807bb1422c1a1af57ff4 403 PRINTS PR00181 Maltose binding protein signature 364 383 2.9E-90 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YP_3076 47f5265ac074807bb1422c1a1af57ff4 403 PRINTS PR00181 Maltose binding protein signature 137 156 2.9E-90 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YP_3076 47f5265ac074807bb1422c1a1af57ff4 403 SUPERFAMILY SSF53850 36 402 5.02E-93 T 14-10-2018 YP_3076 47f5265ac074807bb1422c1a1af57ff4 403 Gene3D G3DSA:3.40.190.10 55 364 4.3E-146 T 14-10-2018 YP_3076 47f5265ac074807bb1422c1a1af57ff4 403 Pfam PF13416 Bacterial extracellular solute-binding protein 57 350 3.1E-40 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein YP_pCD35 8263b3fe2bdeb7969f8d269664efa0f7 131 Gene3D G3DSA:2.60.40.2990 14 131 1.1E-39 T 14-10-2018 YP_pCD35 8263b3fe2bdeb7969f8d269664efa0f7 131 TIGRFAM TIGR02567 YscW: type III secretion system chaperone YscW 6 125 1.0E-51 T 14-10-2018 IPR013400 Type III secretion system chaperone, YscW YP_pCD35 8263b3fe2bdeb7969f8d269664efa0f7 131 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 22 115 3.1E-12 T 14-10-2018 IPR039366 YscW/ExsB YP_2093 236c90f58a88d9f140354cd11a9994d0 266 SMART SM00448 20 130 6.8E-30 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_2093 236c90f58a88d9f140354cd11a9994d0 266 Gene3D G3DSA:3.40.50.2300 12 137 1.9E-28 T 14-10-2018 YP_2093 236c90f58a88d9f140354cd11a9994d0 266 SUPERFAMILY SSF46894 163 258 1.42E-24 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_2093 236c90f58a88d9f140354cd11a9994d0 266 SMART SM00862 181 257 3.1E-19 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_2093 236c90f58a88d9f140354cd11a9994d0 266 Pfam PF00486 Transcriptional regulatory protein, C terminal 182 257 2.6E-19 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_2093 236c90f58a88d9f140354cd11a9994d0 266 SUPERFAMILY SSF52172 15 145 6.55E-32 T 14-10-2018 IPR011006 CheY-like superfamily YP_2093 236c90f58a88d9f140354cd11a9994d0 266 Gene3D G3DSA:1.10.10.10 147 264 4.8E-35 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2093 236c90f58a88d9f140354cd11a9994d0 266 Pfam PF00072 Response regulator receiver domain 22 130 2.0E-20 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0568 fdfab9e0056fffa510c7a5872e7c4bb3 91 Pfam PF13693 Winged helix-turn-helix DNA-binding 7 81 2.9E-38 T 14-10-2018 IPR038722 Ner, winged helix-turn-helix DNA-binding domain YP_0568 fdfab9e0056fffa510c7a5872e7c4bb3 91 SUPERFAMILY SSF47413 4 72 6.75E-31 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_0568 fdfab9e0056fffa510c7a5872e7c4bb3 91 Gene3D G3DSA:1.10.260.40 3 71 2.3E-33 T 14-10-2018 YP_0513 4f278be45f0104b000392c8a8fd068ea 130 Pfam PF02300 Fumarate reductase subunit C 3 128 6.9E-53 T 14-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 YP_0513 4f278be45f0104b000392c8a8fd068ea 130 ProDom PD015900 FUMARATE MEMBRANE REDUCTASE C SUBUNIT TRANSMEMBRANE INNER HYDROPHOBIC REDUCTASE POLYPEPTIDE 7 114 6.0E-58 T 14-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 YP_0513 4f278be45f0104b000392c8a8fd068ea 130 Hamap MF_00708 Fumarate reductase subunit C [frdC]. 2 128 28.237 T 14-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 YP_0513 4f278be45f0104b000392c8a8fd068ea 130 SUPERFAMILY SSF81343 2 129 5.56E-56 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_0513 4f278be45f0104b000392c8a8fd068ea 130 Gene3D G3DSA:1.20.1300.10 2 130 2.4E-49 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_0513 4f278be45f0104b000392c8a8fd068ea 130 PIRSF PIRSF000180 2 130 8.3E-56 T 14-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 YP_1259 bb4b0cdbda472f57c33adbbd95c99ef6 295 SUPERFAMILY SSF161098 8 280 1.13E-44 T 14-10-2018 IPR035906 MetI-like superfamily YP_1259 bb4b0cdbda472f57c33adbbd95c99ef6 295 Gene3D G3DSA:1.10.3720.10 84 285 3.1E-38 T 14-10-2018 IPR035906 MetI-like superfamily YP_1259 bb4b0cdbda472f57c33adbbd95c99ef6 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 282 8.1E-14 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_3540 bad259a16cbfe970aad5154289229eb2 284 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 283 2.4E-101 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YP_3540 bad259a16cbfe970aad5154289229eb2 284 Gene3D G3DSA:3.20.20.70 2 284 2.3E-106 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3540 bad259a16cbfe970aad5154289229eb2 284 TIGRFAM TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family 3 284 1.4E-165 T 14-10-2018 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY GO:0005975|GO:0008270|GO:0009025 KEGG: 00052+4.1.2.40|MetaCyc: PWY-7077|MetaCyc: PWY-7395 YP_3540 bad259a16cbfe970aad5154289229eb2 284 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 283 5.2E-100 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YP_3540 bad259a16cbfe970aad5154289229eb2 284 PIRSF PIRSF001359 1 284 4.5E-109 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YP_3540 bad259a16cbfe970aad5154289229eb2 284 SUPERFAMILY SSF51569 3 283 2.93E-101 T 14-10-2018 YP_3540 bad259a16cbfe970aad5154289229eb2 284 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YP_1455 36dd236122be9428c17ec2583c0f7294 425 Pfam PF13378 Enolase C-terminal domain-like 201 414 2.6E-56 T 14-10-2018 IPR029065 Enolase C-terminal domain-like YP_1455 36dd236122be9428c17ec2583c0f7294 425 SUPERFAMILY SSF54826 4 138 4.77E-37 T 14-10-2018 YP_1455 36dd236122be9428c17ec2583c0f7294 425 SUPERFAMILY SSF51604 183 423 2.49E-69 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YP_1455 36dd236122be9428c17ec2583c0f7294 425 Gene3D G3DSA:3.20.20.120 131 425 4.1E-110 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YP_1455 36dd236122be9428c17ec2583c0f7294 425 Gene3D G3DSA:3.30.390.10 1 130 8.7E-58 T 14-10-2018 IPR029017 Enolase-like, N-terminal YP_1455 36dd236122be9428c17ec2583c0f7294 425 SMART SM00922 198 294 6.0E-22 T 14-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_1455 36dd236122be9428c17ec2583c0f7294 425 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 244 275 - T 14-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 YP_1455 36dd236122be9428c17ec2583c0f7294 425 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 34 135 5.7E-5 T 14-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YP_0254 ca1f41166baf7da78d53d76208115ee7 206 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 189 1.9E-63 T 14-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 YP_0254 ca1f41166baf7da78d53d76208115ee7 206 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 192 27.735 T 14-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 YP_0254 ca1f41166baf7da78d53d76208115ee7 206 Gene3D G3DSA:3.40.50.300 1 206 9.6E-69 T 14-10-2018 YP_0254 ca1f41166baf7da78d53d76208115ee7 206 SUPERFAMILY SSF52540 1 190 3.58E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0254 ca1f41166baf7da78d53d76208115ee7 206 Pfam PF01121 Dephospho-CoA kinase 3 177 2.3E-73 T 14-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 YP_2387 e2c71c08a045190666eaab4354f9fac7 265 PIRSF PIRSF039085 10 265 1.2E-118 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 YP_2387 e2c71c08a045190666eaab4354f9fac7 265 SUPERFAMILY SSF52540 14 259 5.57E-73 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2387 e2c71c08a045190666eaab4354f9fac7 265 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2387 e2c71c08a045190666eaab4354f9fac7 265 SMART SM00382 38 237 1.2E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2387 e2c71c08a045190666eaab4354f9fac7 265 Pfam PF00005 ABC transporter 29 189 2.4E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2387 e2c71c08a045190666eaab4354f9fac7 265 Gene3D G3DSA:3.40.50.300 9 265 3.2E-82 T 14-10-2018 YP_1034 9c836096e8015734fed22a593e746e5c 142 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 141 2.2E-24 T 14-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 YP_1034 9c836096e8015734fed22a593e746e5c 142 Gene3D G3DSA:3.30.420.270 60 133 3.2E-24 T 14-10-2018 YP_1034 9c836096e8015734fed22a593e746e5c 142 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 6 140 27.823 T 14-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 YP_1034 9c836096e8015734fed22a593e746e5c 142 TIGRFAM TIGR02801 tolR: protein TolR 13 140 8.1E-38 T 14-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 YP_0466 64b449765f4b853d0fed801d05d590fb 188 SUPERFAMILY SSF64288 22 180 5.61E-52 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YP_0466 64b449765f4b853d0fed801d05d590fb 188 Pfam PF04345 Chorismate lyase 26 182 1.2E-33 T 14-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 YP_0466 64b449765f4b853d0fed801d05d590fb 188 Gene3D G3DSA:3.40.1410.10 19 180 3.2E-51 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YP_0466 64b449765f4b853d0fed801d05d590fb 188 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 26 180 26.273 T 14-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 YP_3529 9108b665470d61bcf3787bcb887928e2 388 SUPERFAMILY SSF53697 19 377 7.7E-56 T 14-10-2018 YP_3529 9108b665470d61bcf3787bcb887928e2 388 Gene3D G3DSA:3.40.50.10490 4 204 1.3E-54 T 14-10-2018 YP_3529 9108b665470d61bcf3787bcb887928e2 388 Gene3D G3DSA:3.40.50.10490 205 380 1.8E-64 T 14-10-2018 YP_3529 9108b665470d61bcf3787bcb887928e2 388 TIGRFAM TIGR02815 agaS_fam: putative sugar isomerase, AgaS family 16 386 9.2E-164 T 14-10-2018 IPR014180 Sugar isomerase, AgaS GO:0016853 YP_3529 9108b665470d61bcf3787bcb887928e2 388 Pfam PF01380 SIS domain 229 358 2.7E-13 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YP_3529 9108b665470d61bcf3787bcb887928e2 388 Pfam PF01380 SIS domain 54 192 8.3E-14 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YP_2750 ee024b72d55fafc1a6aa7a72e5dc6348 806 Pfam PF09101 Exotoxin A binding 345 403 3.5E-5 T 14-10-2018 IPR015185 Exotoxin A, binding YP_2750 ee024b72d55fafc1a6aa7a72e5dc6348 806 Gene3D G3DSA:2.60.20.10 7 110 1.5E-18 T 14-10-2018 YP_2750 ee024b72d55fafc1a6aa7a72e5dc6348 806 Gene3D G3DSA:2.60.20.10 111 207 1.5E-22 T 14-10-2018 YP_2750 ee024b72d55fafc1a6aa7a72e5dc6348 806 Pfam PF08964 Beta/Gamma crystallin 25 90 4.2E-7 T 14-10-2018 IPR015059 Calcium-dependent cell adhesion molecule, N-terminal GO:0016020|GO:0098609 YP_2750 ee024b72d55fafc1a6aa7a72e5dc6348 806 SUPERFAMILY SSF49695 99 206 4.83E-20 T 14-10-2018 IPR011024 Gamma-crystallin-like YP_2750 ee024b72d55fafc1a6aa7a72e5dc6348 806 Pfam PF00030 Beta/Gamma crystallin 113 206 1.3E-5 T 14-10-2018 IPR001064 Beta/gamma crystallin YP_2750 ee024b72d55fafc1a6aa7a72e5dc6348 806 SUPERFAMILY SSF49695 14 108 2.58E-15 T 14-10-2018 IPR011024 Gamma-crystallin-like YP_2750 ee024b72d55fafc1a6aa7a72e5dc6348 806 SMART SM00247 112 207 0.001 T 14-10-2018 IPR001064 Beta/gamma crystallin YP_2750 ee024b72d55fafc1a6aa7a72e5dc6348 806 SMART SM00247 26 110 0.18 T 14-10-2018 IPR001064 Beta/gamma crystallin YP_0514 52d71e950d3f2b92764c013c05131342 244 Gene3D G3DSA:3.10.20.30 3 106 8.7E-35 T 14-10-2018 IPR012675 Beta-grasp domain superfamily YP_0514 52d71e950d3f2b92764c013c05131342 244 Pfam PF13183 4Fe-4S dicluster domain 146 219 8.1E-12 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_0514 52d71e950d3f2b92764c013c05131342 244 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_0514 52d71e950d3f2b92764c013c05131342 244 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 58 66 - T 14-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 YP_0514 52d71e950d3f2b92764c013c05131342 244 SUPERFAMILY SSF54292 4 106 7.01E-29 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YP_0514 52d71e950d3f2b92764c013c05131342 244 Gene3D G3DSA:1.10.1060.10 107 244 4.4E-51 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YP_0514 52d71e950d3f2b92764c013c05131342 244 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 11 229 3.2E-97 T 14-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_0514 52d71e950d3f2b92764c013c05131342 244 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 9 111 8.7E-32 T 14-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_0514 52d71e950d3f2b92764c013c05131342 244 SUPERFAMILY SSF46548 107 229 7.32E-32 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YP_2742 5acabe47c03c76d8a7efdfa5391aba5c 393 SUPERFAMILY SSF50998 24 385 1.12E-77 T 14-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily YP_2742 5acabe47c03c76d8a7efdfa5391aba5c 393 Pfam PF13360 PQQ-like domain 78 320 1.4E-52 T 14-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat YP_2742 5acabe47c03c76d8a7efdfa5391aba5c 393 Gene3D G3DSA:2.130.10.10 21 392 3.7E-95 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 YP_2742 5acabe47c03c76d8a7efdfa5391aba5c 393 SMART SM00564 201 232 24.0 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YP_2742 5acabe47c03c76d8a7efdfa5391aba5c 393 SMART SM00564 65 96 0.13 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YP_2742 5acabe47c03c76d8a7efdfa5391aba5c 393 SMART SM00564 156 187 2.8E-4 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YP_2742 5acabe47c03c76d8a7efdfa5391aba5c 393 SMART SM00564 290 321 770.0 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YP_2742 5acabe47c03c76d8a7efdfa5391aba5c 393 SMART SM00564 115 147 0.089 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YP_2742 5acabe47c03c76d8a7efdfa5391aba5c 393 SMART SM00564 252 283 7.7E-6 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YP_2742 5acabe47c03c76d8a7efdfa5391aba5c 393 SMART SM00564 330 362 2.3 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YP_2742 5acabe47c03c76d8a7efdfa5391aba5c 393 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 2 393 40.796 T 14-10-2018 IPR017687 Outer membrane protein assembly factor BamB YP_2742 5acabe47c03c76d8a7efdfa5391aba5c 393 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 6 392 4.1E-135 T 14-10-2018 IPR017687 Outer membrane protein assembly factor BamB YP_2402 130d9fcfe2bfdce69643dcf5e17f3941 305 SUPERFAMILY SSF103481 42 138 5.89E-10 T 14-10-2018 YP_2402 130d9fcfe2bfdce69643dcf5e17f3941 305 Pfam PF00892 EamA-like transporter family 4 135 3.4E-18 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_2402 130d9fcfe2bfdce69643dcf5e17f3941 305 Pfam PF00892 EamA-like transporter family 150 280 2.8E-21 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_2402 130d9fcfe2bfdce69643dcf5e17f3941 305 SUPERFAMILY SSF103481 186 283 1.01E-15 T 14-10-2018 YP_3121 3f1b4c96bd61b5afb349a9d1e671721f 898 SUPERFAMILY SSF51621 26 898 0.0 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YP_3121 3f1b4c96bd61b5afb349a9d1e671721f 898 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 153 164 - T 14-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YP_3121 3f1b4c96bd61b5afb349a9d1e671721f 898 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 556 568 - T 14-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YP_3121 3f1b4c96bd61b5afb349a9d1e671721f 898 Pfam PF00311 Phosphoenolpyruvate carboxylase 148 898 1.1E-289 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YP_3121 3f1b4c96bd61b5afb349a9d1e671721f 898 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 596 625 1.0E-68 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YP_3121 3f1b4c96bd61b5afb349a9d1e671721f 898 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 205 221 1.0E-68 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YP_3121 3f1b4c96bd61b5afb349a9d1e671721f 898 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 264 279 1.0E-68 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YP_3121 3f1b4c96bd61b5afb349a9d1e671721f 898 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 405 425 1.0E-68 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YP_3121 3f1b4c96bd61b5afb349a9d1e671721f 898 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 152 165 1.0E-68 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YP_3121 3f1b4c96bd61b5afb349a9d1e671721f 898 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 554 574 1.0E-68 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YP_3121 3f1b4c96bd61b5afb349a9d1e671721f 898 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 728 754 1.0E-68 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YP_3121 3f1b4c96bd61b5afb349a9d1e671721f 898 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 21 898 18.226 T 14-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YP_3121 3f1b4c96bd61b5afb349a9d1e671721f 898 Gene3D G3DSA:1.20.1440.90 292 408 7.7E-28 T 14-10-2018 YP_2012 dad79ad7aa227ae38ced10b4141d4129 282 Pfam PF00106 short chain dehydrogenase 43 239 2.6E-51 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2012 dad79ad7aa227ae38ced10b4141d4129 282 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 42 228 8.2E-4 T 14-10-2018 YP_2012 dad79ad7aa227ae38ced10b4141d4129 282 SUPERFAMILY SSF51735 39 272 1.05E-61 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2012 dad79ad7aa227ae38ced10b4141d4129 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 232 5.6E-22 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2012 dad79ad7aa227ae38ced10b4141d4129 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 43 60 5.6E-22 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2012 dad79ad7aa227ae38ced10b4141d4129 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 240 260 5.6E-22 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2012 dad79ad7aa227ae38ced10b4141d4129 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 184 5.6E-22 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2012 dad79ad7aa227ae38ced10b4141d4129 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 213 5.6E-22 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2012 dad79ad7aa227ae38ced10b4141d4129 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 131 5.6E-22 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2012 dad79ad7aa227ae38ced10b4141d4129 282 Gene3D G3DSA:3.40.50.720 28 279 3.0E-73 T 14-10-2018 YP_2012 dad79ad7aa227ae38ced10b4141d4129 282 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 181 209 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YP_2011 0f85e307ff8050920902dae56d801a53 196 Gene3D G3DSA:3.40.50.300 6 196 5.6E-71 T 14-10-2018 YP_2011 0f85e307ff8050920902dae56d801a53 196 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 28 196 1.5E-58 T 14-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 YP_2011 0f85e307ff8050920902dae56d801a53 196 PIRSF PIRSF015617 1 196 1.5E-67 T 14-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 YP_2011 0f85e307ff8050920902dae56d801a53 196 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 24 196 4.3E-78 T 14-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 YP_2011 0f85e307ff8050920902dae56d801a53 196 SUPERFAMILY SSF52540 7 196 2.66E-75 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2011 0f85e307ff8050920902dae56d801a53 196 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 3 21 2.9E-6 T 14-10-2018 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17 YP_0450 52b6077f1f783c4da845fee0afdcd006 378 Gene3D G3DSA:3.40.50.2020 26 218 5.4E-10 T 14-10-2018 YP_0450 52b6077f1f783c4da845fee0afdcd006 378 PIRSF PIRSF020967 1 378 1.4E-221 T 14-10-2018 IPR011214 Uncharacterised conserved protein UCP020967 YP_0450 52b6077f1f783c4da845fee0afdcd006 378 Pfam PF15609 Phosphoribosyl transferase 32 218 7.8E-62 T 14-10-2018 YP_0450 52b6077f1f783c4da845fee0afdcd006 378 Pfam PF12500 TRSP domain C terminus to PRTase_2 265 356 1.2E-20 T 14-10-2018 IPR022537 TRSP domain YP_0450 52b6077f1f783c4da845fee0afdcd006 378 SUPERFAMILY SSF53271 27 220 3.15E-19 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like YP_3244 ee005fa76030dd663f83e9712c28816f 255 Pfam PF00005 ABC transporter 23 182 1.2E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3244 ee005fa76030dd663f83e9712c28816f 255 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3244 ee005fa76030dd663f83e9712c28816f 255 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 234 254 3.4E-10 T 14-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal YP_3244 ee005fa76030dd663f83e9712c28816f 255 SUPERFAMILY SSF52540 5 253 1.78E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3244 ee005fa76030dd663f83e9712c28816f 255 Gene3D G3DSA:3.40.50.300 5 253 2.5E-61 T 14-10-2018 YP_3244 ee005fa76030dd663f83e9712c28816f 255 SMART SM00382 31 231 1.4E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0608 f0e8f77e8c869b1f44ab5591feb6a0c4 95 Hamap MF_01029 UPF0213 protein YhbQ [yhbQ]. 3 95 33.469 T 14-10-2018 IPR022992 Uncharacterised protein family UPF0213, GIY-YIG endonuclease YP_0608 f0e8f77e8c869b1f44ab5591feb6a0c4 95 Gene3D G3DSA:3.40.1440.10 2 92 3.2E-28 T 14-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 YP_0608 f0e8f77e8c869b1f44ab5591feb6a0c4 95 SUPERFAMILY SSF82771 5 76 6.41E-12 T 14-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 YP_0608 f0e8f77e8c869b1f44ab5591feb6a0c4 95 Pfam PF01541 GIY-YIG catalytic domain 6 77 1.5E-12 T 14-10-2018 IPR000305 GIY-YIG endonuclease YP_3588 e23dede0e8320359d4257ade491ec939 299 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 7 299 59.521 T 14-10-2018 IPR023009 Tyrosine recombinase XerC/XerD YP_3588 e23dede0e8320359d4257ade491ec939 299 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 5 299 63.924 T 14-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 YP_3588 e23dede0e8320359d4257ade491ec939 299 Pfam PF00589 Phage integrase family 114 285 7.9E-56 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YP_3588 e23dede0e8320359d4257ade491ec939 299 Gene3D G3DSA:1.10.150.130 4 100 6.0E-22 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal YP_3588 e23dede0e8320359d4257ade491ec939 299 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 10 299 3.6E-119 T 14-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 YP_3588 e23dede0e8320359d4257ade491ec939 299 SUPERFAMILY SSF56349 107 297 2.44E-58 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YP_3588 e23dede0e8320359d4257ade491ec939 299 SUPERFAMILY SSF47823 5 101 1.29E-36 T 14-10-2018 YP_3588 e23dede0e8320359d4257ade491ec939 299 Gene3D G3DSA:1.10.443.10 111 293 2.5E-79 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YP_3588 e23dede0e8320359d4257ade491ec939 299 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 9 91 2.8E-24 T 14-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 YP_2861 b56db39ee6b4eb35d199d62696536f22 420 Gene3D G3DSA:3.20.20.10 33 279 2.9E-141 T 14-10-2018 IPR029066 PLP-binding barrel YP_2861 b56db39ee6b4eb35d199d62696536f22 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 265 284 8.5E-20 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YP_2861 b56db39ee6b4eb35d199d62696536f22 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 376 389 8.5E-20 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YP_2861 b56db39ee6b4eb35d199d62696536f22 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 51 69 8.5E-20 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YP_2861 b56db39ee6b4eb35d199d62696536f22 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 71 83 8.5E-20 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YP_2861 b56db39ee6b4eb35d199d62696536f22 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 182 195 8.5E-20 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YP_2861 b56db39ee6b4eb35d199d62696536f22 420 SUPERFAMILY SSF51419 25 277 6.94E-57 T 14-10-2018 IPR029066 PLP-binding barrel YP_2861 b56db39ee6b4eb35d199d62696536f22 420 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 51 69 - T 14-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YP_2861 b56db39ee6b4eb35d199d62696536f22 420 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 216 229 - T 14-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YP_2861 b56db39ee6b4eb35d199d62696536f22 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 69 86 2.8E-26 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YP_2861 b56db39ee6b4eb35d199d62696536f22 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 386 408 2.8E-26 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YP_2861 b56db39ee6b4eb35d199d62696536f22 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 293 311 2.8E-26 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YP_2861 b56db39ee6b4eb35d199d62696536f22 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 157 166 2.8E-26 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YP_2861 b56db39ee6b4eb35d199d62696536f22 420 Gene3D G3DSA:2.40.37.10 22 415 2.9E-141 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 YP_2861 b56db39ee6b4eb35d199d62696536f22 420 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 11 418 1.7E-126 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YP_2861 b56db39ee6b4eb35d199d62696536f22 420 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 276 376 7.9E-23 T 14-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 YP_2861 b56db39ee6b4eb35d199d62696536f22 420 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 48 275 5.3E-57 T 14-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 YP_2861 b56db39ee6b4eb35d199d62696536f22 420 SUPERFAMILY SSF50621 251 419 4.6E-56 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 YP_2861 b56db39ee6b4eb35d199d62696536f22 420 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 14 419 37.784 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YP_2155 ff5795e34294a714528d0fd6ba483660 428 SMART SM00363 361 423 0.0049 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_2155 ff5795e34294a714528d0fd6ba483660 428 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 46 56 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_2155 ff5795e34294a714528d0fd6ba483660 428 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 6 427 8.4E-144 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 YP_2155 ff5795e34294a714528d0fd6ba483660 428 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 8 427 46.034 T 14-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 YP_2155 ff5795e34294a714528d0fd6ba483660 428 SUPERFAMILY SSF52374 8 332 1.87E-108 T 14-10-2018 YP_2155 ff5795e34294a714528d0fd6ba483660 428 Pfam PF00579 tRNA synthetases class I (W and Y) 35 332 1.9E-91 T 14-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_2155 ff5795e34294a714528d0fd6ba483660 428 Gene3D G3DSA:3.10.290.10 334 428 1.3E-28 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YP_2155 ff5795e34294a714528d0fd6ba483660 428 Gene3D G3DSA:3.40.50.620 5 231 9.0E-95 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_2155 ff5795e34294a714528d0fd6ba483660 428 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 50 72 3.3E-32 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 YP_2155 ff5795e34294a714528d0fd6ba483660 428 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 171 186 3.3E-32 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 YP_2155 ff5795e34294a714528d0fd6ba483660 428 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 192 214 3.3E-32 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 YP_2155 ff5795e34294a714528d0fd6ba483660 428 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 225 237 3.3E-32 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 YP_2155 ff5795e34294a714528d0fd6ba483660 428 SUPERFAMILY SSF55174 331 427 1.13E-20 T 14-10-2018 YP_2155 ff5795e34294a714528d0fd6ba483660 428 Gene3D G3DSA:1.10.240.10 232 333 8.8E-36 T 14-10-2018 YP_2155 ff5795e34294a714528d0fd6ba483660 428 Pfam PF01479 S4 domain 363 404 2.5E-5 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_2576 2e59d7e4ef9a3c0dc92907faeac002c3 393 Pfam PF06812 ImpA, N-terminal, type VI secretion system 17 140 2.4E-29 T 14-10-2018 IPR010657 ImpA, N-terminal YP_0409 b81b308081813bf7dd7162839e16f58e 929 Gene3D G3DSA:1.10.287.130 350 450 2.5E-25 T 14-10-2018 YP_0409 b81b308081813bf7dd7162839e16f58e 929 SUPERFAMILY SSF55874 441 604 1.03E-46 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0409 b81b308081813bf7dd7162839e16f58e 929 Gene3D G3DSA:1.20.120.160 822 909 5.7E-6 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 YP_0409 b81b308081813bf7dd7162839e16f58e 929 SUPERFAMILY SSF52172 683 804 6.12E-33 T 14-10-2018 IPR011006 CheY-like superfamily YP_0409 b81b308081813bf7dd7162839e16f58e 929 Gene3D G3DSA:3.30.565.10 451 607 2.5E-44 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0409 b81b308081813bf7dd7162839e16f58e 929 Gene3D G3DSA:3.40.50.2300 679 805 9.8E-34 T 14-10-2018 YP_0409 b81b308081813bf7dd7162839e16f58e 929 SUPERFAMILY SSF47384 373 454 2.35E-19 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_0409 b81b308081813bf7dd7162839e16f58e 929 Pfam PF00512 His Kinase A (phospho-acceptor) domain 388 452 9.1E-17 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0409 b81b308081813bf7dd7162839e16f58e 929 SUPERFAMILY SSF47226 782 891 4.58E-9 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 YP_0409 b81b308081813bf7dd7162839e16f58e 929 Pfam PF00072 Response regulator receiver domain 686 799 2.2E-21 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0409 b81b308081813bf7dd7162839e16f58e 929 SMART SM00388 387 452 1.0E-21 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0409 b81b308081813bf7dd7162839e16f58e 929 SMART SM00387 499 606 1.5E-35 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0409 b81b308081813bf7dd7162839e16f58e 929 SMART SM00448 684 799 2.2E-30 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0409 b81b308081813bf7dd7162839e16f58e 929 PRINTS PR00344 Bacterial sensor protein C-terminal signature 566 584 1.4E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0409 b81b308081813bf7dd7162839e16f58e 929 PRINTS PR00344 Bacterial sensor protein C-terminal signature 590 603 1.4E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0409 b81b308081813bf7dd7162839e16f58e 929 PRINTS PR00344 Bacterial sensor protein C-terminal signature 535 549 1.4E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0409 b81b308081813bf7dd7162839e16f58e 929 PRINTS PR00344 Bacterial sensor protein C-terminal signature 553 563 1.4E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0409 b81b308081813bf7dd7162839e16f58e 929 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 500 604 5.0E-30 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0409 b81b308081813bf7dd7162839e16f58e 929 Pfam PF01627 Hpt domain 838 904 4.5E-6 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 YP_pCRY24 f23a57493de72fe1d18372b83230f8cf 157 Gene3D G3DSA:2.40.50.90 20 146 9.7E-35 T 14-10-2018 IPR035437 SNase-like, OB-fold superfamily YP_pCRY24 f23a57493de72fe1d18372b83230f8cf 157 SUPERFAMILY SSF50199 23 150 2.88E-38 T 14-10-2018 YP_pCRY24 f23a57493de72fe1d18372b83230f8cf 157 ProSitePatterns PS01123 Thermonuclease family signature 1. 32 56 - T 14-10-2018 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Reactome: R-HSA-6802952 YP_pCRY24 f23a57493de72fe1d18372b83230f8cf 157 Pfam PF00565 Staphylococcal nuclease homologue 46 142 1.8E-25 T 14-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 YP_pCRY24 f23a57493de72fe1d18372b83230f8cf 157 SMART SM00318 21 143 6.4E-40 T 14-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 YP_2309 8ebc38487268b12bba4e3efc1dffb7cd 559 ProSitePatterns PS01303 BCCT family of transporters signature. 322 331 - T 14-10-2018 IPR018093 BCCT transporter, conserved site YP_2309 8ebc38487268b12bba4e3efc1dffb7cd 559 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 66 509 3.5E-149 T 14-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 YP_2309 8ebc38487268b12bba4e3efc1dffb7cd 559 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 24 509 2.5E-116 T 14-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 YP_1901 054eb81548425a83568a9c3c66137996 334 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 334 7.0E-42 T 14-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 YP_1901 054eb81548425a83568a9c3c66137996 334 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 7 238 8.3E-118 T 14-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 YP_1901 054eb81548425a83568a9c3c66137996 334 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 256 329 1.2E-33 T 14-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 YP_1901 054eb81548425a83568a9c3c66137996 334 Gene3D G3DSA:1.10.8.60 185 258 1.5E-29 T 14-10-2018 YP_1901 054eb81548425a83568a9c3c66137996 334 Gene3D G3DSA:1.10.10.10 260 334 1.1E-32 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1901 054eb81548425a83568a9c3c66137996 334 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 334 185.486 T 14-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 YP_1901 054eb81548425a83568a9c3c66137996 334 Gene3D G3DSA:3.40.50.300 23 184 8.3E-40 T 14-10-2018 YP_1901 054eb81548425a83568a9c3c66137996 334 SUPERFAMILY SSF46785 260 331 3.27E-25 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1901 054eb81548425a83568a9c3c66137996 334 SMART SM00382 54 181 1.7E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1901 054eb81548425a83568a9c3c66137996 334 SUPERFAMILY SSF52540 23 255 4.07E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1901 054eb81548425a83568a9c3c66137996 334 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 27 329 4.6E-149 T 14-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 YP_2253 901a7ed3a676152af2cf18812316ea5b 413 SUPERFAMILY SSF53901 3 252 8.51E-78 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_2253 901a7ed3a676152af2cf18812316ea5b 413 SMART SM00825 Beta-ketoacyl synthase 6 413 4.3E-14 T 14-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YP_2253 901a7ed3a676152af2cf18812316ea5b 413 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 369 1.3E-39 T 14-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal YP_2253 901a7ed3a676152af2cf18812316ea5b 413 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 247 2.8E-62 T 14-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal YP_2253 901a7ed3a676152af2cf18812316ea5b 413 SUPERFAMILY SSF53901 215 412 1.54E-73 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_2253 901a7ed3a676152af2cf18812316ea5b 413 PIRSF PIRSF000447 1 413 4.1E-203 T 14-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 YP_2253 901a7ed3a676152af2cf18812316ea5b 413 Gene3D G3DSA:3.40.47.10 1 255 2.3E-89 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_2253 901a7ed3a676152af2cf18812316ea5b 413 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 14-10-2018 IPR018201 Beta-ketoacyl synthase, active site YP_2253 901a7ed3a676152af2cf18812316ea5b 413 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 411 1.0E-197 T 14-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 YP_2253 901a7ed3a676152af2cf18812316ea5b 413 Gene3D G3DSA:3.40.47.10 261 413 6.0E-58 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_0977 753ede33f185689dccde65892c92e34f 422 Pfam PF12698 ABC-2 family transporter protein 75 414 1.8E-42 T 14-10-2018 YP_2544 2aa3697cf11ea100909d45c09668a297 540 SUPERFAMILY SSF52402 251 520 1.01E-77 T 14-10-2018 YP_2544 2aa3697cf11ea100909d45c09668a297 540 TIGRFAM TIGR00552 nadE: NAD+ synthetase 265 511 4.7E-59 T 14-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 YP_2544 2aa3697cf11ea100909d45c09668a297 540 Gene3D G3DSA:3.60.110.10 1 255 1.2E-85 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YP_2544 2aa3697cf11ea100909d45c09668a297 540 Pfam PF02540 NAD synthase 264 511 1.6E-71 T 14-10-2018 IPR022310 NAD/GMP synthase YP_2544 2aa3697cf11ea100909d45c09668a297 540 ProSitePatterns PS00920 Nitrilases / cyanide hydratase signature 1. 37 52 - T 14-10-2018 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 YP_2544 2aa3697cf11ea100909d45c09668a297 540 SUPERFAMILY SSF56317 4 242 1.44E-59 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YP_2544 2aa3697cf11ea100909d45c09668a297 540 Gene3D G3DSA:3.40.50.620 261 539 3.2E-113 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_2544 2aa3697cf11ea100909d45c09668a297 540 PIRSF PIRSF006630 243 539 2.2E-120 T 14-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 YP_2544 2aa3697cf11ea100909d45c09668a297 540 PIRSF PIRSF006630 2 247 4.5E-80 T 14-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 YP_2544 2aa3697cf11ea100909d45c09668a297 540 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 5 537 28.21 T 14-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 YP_2544 2aa3697cf11ea100909d45c09668a297 540 Pfam PF00795 Carbon-nitrogen hydrolase 7 241 8.7E-25 T 14-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 YP_1799 b1e0552a4633ed8eab4cd54b421493f7 135 Pfam PF01042 Endoribonuclease L-PSP 15 133 1.6E-40 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 YP_1799 b1e0552a4633ed8eab4cd54b421493f7 135 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 11 132 7.9E-47 T 14-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 YP_1799 b1e0552a4633ed8eab4cd54b421493f7 135 SUPERFAMILY SSF55298 9 134 9.42E-42 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YP_1799 b1e0552a4633ed8eab4cd54b421493f7 135 Gene3D G3DSA:3.30.1330.40 5 135 5.4E-47 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YP_0159 ce74247199bea09e7e23b9f35ad923c3 319 Pfam PF00579 tRNA synthetases class I (W and Y) 1 270 3.4E-81 T 14-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_0159 ce74247199bea09e7e23b9f35ad923c3 319 SUPERFAMILY SSF52374 1 315 5.2E-95 T 14-10-2018 YP_0159 ce74247199bea09e7e23b9f35ad923c3 319 Gene3D G3DSA:3.40.50.620 1 314 8.3E-138 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0159 ce74247199bea09e7e23b9f35ad923c3 319 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 1 316 39.252 T 14-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 YP_0159 ce74247199bea09e7e23b9f35ad923c3 319 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 127 148 2.2E-29 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 YP_0159 ce74247199bea09e7e23b9f35ad923c3 319 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 1 17 2.2E-29 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 YP_0159 ce74247199bea09e7e23b9f35ad923c3 319 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 51 70 2.2E-29 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 YP_0159 ce74247199bea09e7e23b9f35ad923c3 319 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 180 190 2.2E-29 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 YP_0159 ce74247199bea09e7e23b9f35ad923c3 319 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 2 315 8.6E-111 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 YP_0159 ce74247199bea09e7e23b9f35ad923c3 319 Gene3D G3DSA:1.10.240.10 171 283 8.3E-138 T 14-10-2018 YP_1496 6a94483517e125133b01416a390766d2 113 SUPERFAMILY SSF50331 14 96 1.17E-20 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YP_1496 6a94483517e125133b01416a390766d2 113 Gene3D G3DSA:2.40.50.100 14 101 2.6E-22 T 14-10-2018 YP_1496 6a94483517e125133b01416a390766d2 113 Pfam PF08402 TOBE domain 21 92 1.1E-12 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YP_1496 6a94483517e125133b01416a390766d2 113 Gene3D G3DSA:2.40.50.140 28 84 2.6E-22 T 14-10-2018 YP_2215 c0644dc23641e49579c115490f05c4e1 795 SMART SM00874 403 471 1.5E-31 T 14-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 YP_2215 c0644dc23641e49579c115490f05c4e1 795 Gene3D G3DSA:2.40.50.140 39 154 6.3E-74 T 14-10-2018 YP_2215 c0644dc23641e49579c115490f05c4e1 795 SUPERFAMILY SSF46955 404 475 1.56E-20 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily YP_2215 c0644dc23641e49579c115490f05c4e1 795 SUPERFAMILY SSF50249 36 195 4.65E-51 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_2215 c0644dc23641e49579c115490f05c4e1 795 SUPERFAMILY SSF55681 467 690 8.95E-56 T 14-10-2018 YP_2215 c0644dc23641e49579c115490f05c4e1 795 Pfam PF03147 Ferredoxin-fold anticodon binding domain 701 794 3.1E-28 T 14-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 YP_2215 c0644dc23641e49579c115490f05c4e1 795 Gene3D G3DSA:3.30.56.10 7 180 6.3E-74 T 14-10-2018 YP_2215 c0644dc23641e49579c115490f05c4e1 795 Pfam PF03484 tRNA synthetase B5 domain 406 471 2.1E-20 T 14-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 YP_2215 c0644dc23641e49579c115490f05c4e1 795 Gene3D G3DSA:3.30.70.380 702 795 1.1E-31 T 14-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 YP_2215 c0644dc23641e49579c115490f05c4e1 795 SMART SM00896 701 794 8.0E-45 T 14-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 YP_2215 c0644dc23641e49579c115490f05c4e1 795 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 788 48.254 T 14-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 YP_2215 c0644dc23641e49579c115490f05c4e1 795 Gene3D G3DSA:3.30.56.10 401 475 7.9E-29 T 14-10-2018 YP_2215 c0644dc23641e49579c115490f05c4e1 795 Gene3D G3DSA:3.50.40.10 197 395 5.4E-83 T 14-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 YP_2215 c0644dc23641e49579c115490f05c4e1 795 SUPERFAMILY SSF56037 196 394 1.39E-77 T 14-10-2018 YP_2215 c0644dc23641e49579c115490f05c4e1 795 Pfam PF01588 Putative tRNA binding domain 45 145 2.2E-27 T 14-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 YP_2215 c0644dc23641e49579c115490f05c4e1 795 SMART SM00873 212 385 6.6E-99 T 14-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 YP_2215 c0644dc23641e49579c115490f05c4e1 795 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 794 2.3E-292 T 14-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 YP_2215 c0644dc23641e49579c115490f05c4e1 795 SUPERFAMILY SSF54991 696 794 1.96E-30 T 14-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 YP_2215 c0644dc23641e49579c115490f05c4e1 795 Pfam PF03483 B3/4 domain 212 385 5.0E-71 T 14-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 YP_2215 c0644dc23641e49579c115490f05c4e1 795 Gene3D G3DSA:3.30.930.10 485 693 3.0E-65 T 14-10-2018 YP_1109 76c0df49f130962c3ef3acc52a1acd63 631 Pfam PF00905 Penicillin binding protein transpeptidase domain 273 607 9.5E-86 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 YP_1109 76c0df49f130962c3ef3acc52a1acd63 631 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 4 614 52.728 T 14-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_1109 76c0df49f130962c3ef3acc52a1acd63 631 Pfam PF03717 Penicillin-binding Protein dimerisation domain 65 240 4.1E-45 T 14-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 YP_1109 76c0df49f130962c3ef3acc52a1acd63 631 Gene3D G3DSA:3.30.1390.30 86 161 3.3E-50 T 14-10-2018 YP_1109 76c0df49f130962c3ef3acc52a1acd63 631 Gene3D G3DSA:3.40.710.10 249 618 4.7E-94 T 14-10-2018 YP_1109 76c0df49f130962c3ef3acc52a1acd63 631 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 610 9.8E-236 T 14-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_1109 76c0df49f130962c3ef3acc52a1acd63 631 SUPERFAMILY SSF56601 255 610 1.3E-91 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YP_1109 76c0df49f130962c3ef3acc52a1acd63 631 Gene3D G3DSA:3.90.1310.10 65 248 3.3E-50 T 14-10-2018 YP_1109 76c0df49f130962c3ef3acc52a1acd63 631 SUPERFAMILY SSF56519 57 254 2.22E-52 T 14-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 YP_2720 c6b78acad0b982403ff25ff8673c6e10 127 Gene3D G3DSA:2.30.29.80 17 127 1.4E-45 T 14-10-2018 YP_2720 c6b78acad0b982403ff25ff8673c6e10 127 SUPERFAMILY SSF160113 19 75 3.92E-19 T 14-10-2018 IPR036913 YegP-like superfamily YP_2720 c6b78acad0b982403ff25ff8673c6e10 127 SUPERFAMILY SSF160113 71 124 6.8E-15 T 14-10-2018 IPR036913 YegP-like superfamily YP_2720 c6b78acad0b982403ff25ff8673c6e10 127 Pfam PF07411 Domain of unknown function (DUF1508) 26 73 2.4E-23 T 14-10-2018 IPR010879 Domain of unknown function DUF1508 YP_2720 c6b78acad0b982403ff25ff8673c6e10 127 Pfam PF07411 Domain of unknown function (DUF1508) 78 124 4.6E-18 T 14-10-2018 IPR010879 Domain of unknown function DUF1508 YP_1114 420006f97e2834a353aeb3f14b9e77af 233 Pfam PF03099 Biotin/lipoate A/B protein ligase family 66 163 2.4E-6 T 14-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 YP_1114 420006f97e2834a353aeb3f14b9e77af 233 Hamap MF_00013 Octanoyltransferase [lipB]. 9 210 37.185 T 14-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 YP_1114 420006f97e2834a353aeb3f14b9e77af 233 Gene3D G3DSA:3.30.930.10 4 208 3.2E-62 T 14-10-2018 YP_1114 420006f97e2834a353aeb3f14b9e77af 233 SUPERFAMILY SSF55681 6 209 5.39E-70 T 14-10-2018 YP_1114 420006f97e2834a353aeb3f14b9e77af 233 PIRSF PIRSF016262 5 217 3.3E-58 T 14-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 YP_1114 420006f97e2834a353aeb3f14b9e77af 233 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 34 207 3.7E-73 T 14-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 YP_1114 420006f97e2834a353aeb3f14b9e77af 233 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 75 90 - T 14-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 YP_1114 420006f97e2834a353aeb3f14b9e77af 233 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 79 132 5.0E-25 T 14-10-2018 YP_3896 09f0ffe2e013e15b0c1c5bf897937e15 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 70 86 2.1E-6 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_3896 09f0ffe2e013e15b0c1c5bf897937e15 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 70 2.1E-6 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_3896 09f0ffe2e013e15b0c1c5bf897937e15 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 37 93 7.2E-20 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_3896 09f0ffe2e013e15b0c1c5bf897937e15 241 Gene3D G3DSA:1.20.120.530 99 237 1.6E-20 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_3896 09f0ffe2e013e15b0c1c5bf897937e15 241 SUPERFAMILY SSF46785 28 100 4.46E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3896 09f0ffe2e013e15b0c1c5bf897937e15 241 SMART SM00895 106 226 2.5E-12 T 14-10-2018 IPR011711 GntR, C-terminal YP_3896 09f0ffe2e013e15b0c1c5bf897937e15 241 SMART SM00345 38 96 5.5E-21 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_3896 09f0ffe2e013e15b0c1c5bf897937e15 241 SUPERFAMILY SSF48008 102 234 9.42E-19 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_3896 09f0ffe2e013e15b0c1c5bf897937e15 241 Pfam PF07729 FCD domain 106 225 4.2E-21 T 14-10-2018 IPR011711 GntR, C-terminal YP_3896 09f0ffe2e013e15b0c1c5bf897937e15 241 Gene3D G3DSA:1.10.10.10 31 97 8.9E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0839 cb1980e65a7ca669890bc807aff85674 139 Gene3D G3DSA:1.10.1660.10 1 125 3.1E-32 T 14-10-2018 YP_0839 cb1980e65a7ca669890bc807aff85674 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 4.7E-5 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YP_0839 cb1980e65a7ca669890bc807aff85674 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 4.7E-5 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YP_0839 cb1980e65a7ca669890bc807aff85674 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 4.7E-5 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YP_0839 cb1980e65a7ca669890bc807aff85674 139 Pfam PF13411 MerR HTH family regulatory protein 1 68 1.3E-19 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YP_0839 cb1980e65a7ca669890bc807aff85674 139 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 6.8E-57 T 14-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 YP_0839 cb1980e65a7ca669890bc807aff85674 139 SUPERFAMILY SSF46955 1 126 7.69E-35 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily YP_0839 cb1980e65a7ca669890bc807aff85674 139 SMART SM00422 1 70 4.0E-29 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YP_3954 e494714a6d4d7c4b272aed509d1451f1 181 Gene3D G3DSA:2.60.40.4150 44 179 1.7E-29 T 14-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily YP_3954 e494714a6d4d7c4b272aed509d1451f1 181 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 18 171 3.3E-36 T 14-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN YP_3954 e494714a6d4d7c4b272aed509d1451f1 181 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 10 174 7.2E-38 T 14-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN YP_3585 40bd4f236ba494537a8600d70815d5cc 310 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 190 206 - T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 YP_3585 40bd4f236ba494537a8600d70815d5cc 310 Pfam PF00472 RF-1 domain 173 282 2.4E-41 T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 YP_3585 40bd4f236ba494537a8600d70815d5cc 310 Gene3D G3DSA:3.30.160.20 171 266 7.6E-98 T 14-10-2018 YP_3585 40bd4f236ba494537a8600d70815d5cc 310 Gene3D G3DSA:1.20.58.410 1 61 3.8E-15 T 14-10-2018 YP_3585 40bd4f236ba494537a8600d70815d5cc 310 SMART SM00937 30 140 1.5E-55 T 14-10-2018 IPR005139 Peptide chain release factor GO:0006415 YP_3585 40bd4f236ba494537a8600d70815d5cc 310 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 310 33.627 T 14-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 YP_3585 40bd4f236ba494537a8600d70815d5cc 310 SUPERFAMILY SSF75620 1 309 1.44E-134 T 14-10-2018 YP_3585 40bd4f236ba494537a8600d70815d5cc 310 Gene3D G3DSA:3.30.70.1660 75 303 7.6E-98 T 14-10-2018 YP_3585 40bd4f236ba494537a8600d70815d5cc 310 Pfam PF03462 PCRF domain 2 164 2.3E-50 T 14-10-2018 IPR005139 Peptide chain release factor GO:0006415 YP_3585 40bd4f236ba494537a8600d70815d5cc 310 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 308 1.5E-156 T 14-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 YP_2509 d589a2cc7081325e098525dd98ef0018 150 SUPERFAMILY SSF51998 50 148 2.06E-24 T 14-10-2018 YP_2509 d589a2cc7081325e098525dd98ef0018 150 ProSitePatterns PS00850 Glycine radical domain signature. 120 128 - T 14-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YP_2509 d589a2cc7081325e098525dd98ef0018 150 PIRSF PIRSF000378 25 150 2.7E-54 T 14-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA YP_2509 d589a2cc7081325e098525dd98ef0018 150 Hamap MF_00806 Autonomous glycyl radical cofactor [grcA]. 24 150 41.885 T 14-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA YP_2509 d589a2cc7081325e098525dd98ef0018 150 Gene3D G3DSA:3.20.70.20 82 150 4.4E-25 T 14-10-2018 YP_2509 d589a2cc7081325e098525dd98ef0018 150 Pfam PF01228 Glycine radical 37 131 1.7E-22 T 14-10-2018 IPR001150 Glycine radical domain GO:0003824 YP_2509 d589a2cc7081325e098525dd98ef0018 150 TIGRFAM TIGR04365 spare_glycyl: autonomous glycyl radical cofactor GrcA 25 150 2.1E-71 T 14-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA YP_3721 e8d560236b72b2267721d41b30debcc8 429 Pfam PF14821 Threonine synthase N terminus 8 80 5.3E-11 T 14-10-2018 IPR029144 Threonine synthase, N-terminal YP_3721 e8d560236b72b2267721d41b30debcc8 429 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 93 370 7.2E-24 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YP_3721 e8d560236b72b2267721d41b30debcc8 429 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 97 111 - T 14-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 YP_3721 e8d560236b72b2267721d41b30debcc8 429 TIGRFAM TIGR00260 thrC: threonine synthase 53 397 3.7E-121 T 14-10-2018 IPR004450 Threonine synthase-like YP_3721 e8d560236b72b2267721d41b30debcc8 429 Gene3D G3DSA:3.40.50.1100 103 401 4.1E-141 T 14-10-2018 YP_3721 e8d560236b72b2267721d41b30debcc8 429 SUPERFAMILY SSF53686 1 426 1.83E-132 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_3721 e8d560236b72b2267721d41b30debcc8 429 Gene3D G3DSA:3.40.50.1100 85 394 4.1E-141 T 14-10-2018 YP_3721 e8d560236b72b2267721d41b30debcc8 429 Gene3D G3DSA:3.90.1380.10 1 81 6.8E-34 T 14-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily YP_0424 a17a27e94c47a0918a28069cdb8affc2 320 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 241 310 8.3E-14 T 14-10-2018 IPR001543 Surface presentation of antigen (SpoA) YP_0424 a17a27e94c47a0918a28069cdb8affc2 320 SUPERFAMILY SSF101801 241 313 2.88E-14 T 14-10-2018 IPR036429 SpoA-like superfamily YP_0424 a17a27e94c47a0918a28069cdb8affc2 320 TIGRFAM TIGR02551 SpaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family 34 310 3.4E-67 T 14-10-2018 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO GO:0030254 YP_0424 a17a27e94c47a0918a28069cdb8affc2 320 Gene3D G3DSA:2.30.330.10 230 314 2.5E-16 T 14-10-2018 IPR036429 SpoA-like superfamily YP_0424 a17a27e94c47a0918a28069cdb8affc2 320 PRINTS PR00956 Flagellar motor switch protein FliN signature 241 257 4.7E-5 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YP_0424 a17a27e94c47a0918a28069cdb8affc2 320 PRINTS PR00956 Flagellar motor switch protein FliN signature 258 274 4.7E-5 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YP_0424 a17a27e94c47a0918a28069cdb8affc2 320 PRINTS PR00956 Flagellar motor switch protein FliN signature 287 302 4.7E-5 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YP_0437 e65cdfcf7bb3517903ed531e72e8a32e 345 Gene3D G3DSA:3.40.1570.10 13 281 5.3E-136 T 14-10-2018 YP_0437 e65cdfcf7bb3517903ed531e72e8a32e 345 SUPERFAMILY SSF144064 4 339 1.28E-132 T 14-10-2018 YP_0437 e65cdfcf7bb3517903ed531e72e8a32e 345 Gene3D G3DSA:3.40.1570.10 82 332 5.3E-136 T 14-10-2018 YP_0437 e65cdfcf7bb3517903ed531e72e8a32e 345 Pfam PF05171 Haemin-degrading HemS.ChuX domain 207 338 3.3E-40 T 14-10-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 YP_0437 e65cdfcf7bb3517903ed531e72e8a32e 345 Pfam PF05171 Haemin-degrading HemS.ChuX domain 29 157 5.3E-44 T 14-10-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 YP_2274 6913b5e118003688f86816e338c6eae3 232 Pfam PF00892 EamA-like transporter family 27 163 2.2E-18 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_2274 6913b5e118003688f86816e338c6eae3 232 SUPERFAMILY SSF103481 62 166 2.35E-15 T 14-10-2018 YP_0989 78324ccbc496634fb8cfdbafb8de582d 293 SUPERFAMILY SSF103481 41 142 7.85E-11 T 14-10-2018 YP_0989 78324ccbc496634fb8cfdbafb8de582d 293 SUPERFAMILY SSF103481 188 290 2.88E-5 T 14-10-2018 YP_0989 78324ccbc496634fb8cfdbafb8de582d 293 Pfam PF00892 EamA-like transporter family 10 140 1.2E-13 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_0989 78324ccbc496634fb8cfdbafb8de582d 293 Pfam PF00892 EamA-like transporter family 156 288 1.4E-12 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_pCD04 8641e357db3186c9f4b9a8544a33b9e9 134 Pfam PF00665 Integrase core domain 19 97 1.1E-16 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_pCD04 8641e357db3186c9f4b9a8544a33b9e9 134 Gene3D G3DSA:3.30.420.10 6 107 4.4E-7 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_pCD04 8641e357db3186c9f4b9a8544a33b9e9 134 SUPERFAMILY SSF53098 19 98 1.26E-18 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_pPCP08 897b5b0d4473750cc082b5311e7c04de 312 PIRSF PIRSF001522 1 312 5.4E-145 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_pPCP08 897b5b0d4473750cc082b5311e7c04de 312 Gene3D G3DSA:2.40.128.90 21 312 1.4E-131 T 14-10-2018 YP_pPCP08 897b5b0d4473750cc082b5311e7c04de 312 PRINTS PR00482 Omptin serine protease signature 143 170 2.6E-102 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_pPCP08 897b5b0d4473750cc082b5311e7c04de 312 PRINTS PR00482 Omptin serine protease signature 38 52 2.6E-102 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_pPCP08 897b5b0d4473750cc082b5311e7c04de 312 PRINTS PR00482 Omptin serine protease signature 83 108 2.6E-102 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_pPCP08 897b5b0d4473750cc082b5311e7c04de 312 PRINTS PR00482 Omptin serine protease signature 186 207 2.6E-102 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_pPCP08 897b5b0d4473750cc082b5311e7c04de 312 PRINTS PR00482 Omptin serine protease signature 234 254 2.6E-102 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_pPCP08 897b5b0d4473750cc082b5311e7c04de 312 PRINTS PR00482 Omptin serine protease signature 57 82 2.6E-102 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_pPCP08 897b5b0d4473750cc082b5311e7c04de 312 PRINTS PR00482 Omptin serine protease signature 115 142 2.6E-102 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_pPCP08 897b5b0d4473750cc082b5311e7c04de 312 PRINTS PR00482 Omptin serine protease signature 208 229 2.6E-102 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_pPCP08 897b5b0d4473750cc082b5311e7c04de 312 PRINTS PR00482 Omptin serine protease signature 255 275 2.6E-102 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_pPCP08 897b5b0d4473750cc082b5311e7c04de 312 Pfam PF01278 Omptin family 31 312 1.2E-127 T 14-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YP_pPCP08 897b5b0d4473750cc082b5311e7c04de 312 ProSitePatterns PS00834 Aspartyl proteases, omptin family signature 1. 115 124 - T 14-10-2018 IPR020079 Peptidase A26, omptin, conserved site GO:0004175|GO:0006508|GO:0009279 YP_pPCP08 897b5b0d4473750cc082b5311e7c04de 312 SUPERFAMILY SSF69917 24 312 8.11E-112 T 14-10-2018 IPR020080 Outer membrane adhesin/peptidase omptin GO:0004190 YP_pPCP08 897b5b0d4473750cc082b5311e7c04de 312 ProSitePatterns PS00835 Aspartyl proteases, omptin family signature 2. 152 168 - T 14-10-2018 IPR020079 Peptidase A26, omptin, conserved site GO:0004175|GO:0006508|GO:0009279 YP_0170 51ba9fdf03c345c90f9432f8f1ff5ca6 513 Gene3D G3DSA:3.40.50.300 203 383 1.9E-19 T 14-10-2018 YP_0170 51ba9fdf03c345c90f9432f8f1ff5ca6 513 Gene3D G3DSA:3.40.50.300 6 149 3.7E-10 T 14-10-2018 YP_0170 51ba9fdf03c345c90f9432f8f1ff5ca6 513 Pfam PF05872 Bacterial protein of unknown function (DUF853) 17 513 7.7E-235 T 14-10-2018 IPR033186 Helicase HerA-like C-terminal YP_0170 51ba9fdf03c345c90f9432f8f1ff5ca6 513 SUPERFAMILY SSF52540 8 377 3.26E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2480 cc413c67976e62729d98e580f0f7b0eb 115 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 15 104 3.0E-17 T 14-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 YP_2480 cc413c67976e62729d98e580f0f7b0eb 115 Gene3D G3DSA:3.40.50.2300 11 115 7.9E-33 T 14-10-2018 YP_2480 cc413c67976e62729d98e580f0f7b0eb 115 SUPERFAMILY SSF52794 14 113 8.89E-32 T 14-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 YP_0836 5b96c9951547790dbb2cb970955fe42e 162 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 5 159 3.3E-54 T 14-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC YP_0836 5b96c9951547790dbb2cb970955fe42e 162 PIRSF PIRSF006181 1 162 9.3E-55 T 14-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC YP_0836 5b96c9951547790dbb2cb970955fe42e 162 Pfam PF04073 Aminoacyl-tRNA editing domain 34 148 6.0E-24 T 14-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 YP_0836 5b96c9951547790dbb2cb970955fe42e 162 Gene3D G3DSA:3.90.960.10 2 162 4.2E-62 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 YP_0836 5b96c9951547790dbb2cb970955fe42e 162 SUPERFAMILY SSF55826 5 158 3.4E-44 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 YP_2770 5046a23cc4fd2e45c1491291ff5f3720 280 PIRSF PIRSF005457 26 280 6.1E-89 T 14-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 YP_2770 5046a23cc4fd2e45c1491291ff5f3720 280 SUPERFAMILY SSF56281 30 280 4.06E-67 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_2770 5046a23cc4fd2e45c1491291ff5f3720 280 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 195 280 1.7E-23 T 14-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 YP_2770 5046a23cc4fd2e45c1491291ff5f3720 280 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 33 280 8.5E-104 T 14-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 YP_2770 5046a23cc4fd2e45c1491291ff5f3720 280 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 30 280 45.336 T 14-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 YP_2770 5046a23cc4fd2e45c1491291ff5f3720 280 SMART SM00849 40 194 7.6E-39 T 14-10-2018 IPR001279 Metallo-beta-lactamase YP_2770 5046a23cc4fd2e45c1491291ff5f3720 280 Pfam PF00753 Metallo-beta-lactamase superfamily 42 194 8.2E-18 T 14-10-2018 IPR001279 Metallo-beta-lactamase YP_2770 5046a23cc4fd2e45c1491291ff5f3720 280 Gene3D G3DSA:3.60.15.10 24 280 1.7E-94 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_2066 93d69075eac551af63fda386be6504a4 431 Gene3D G3DSA:1.10.3080.10 18 431 1.6E-76 T 14-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 YP_2066 93d69075eac551af63fda386be6504a4 431 Pfam PF00654 Voltage gated chloride channel 82 421 5.8E-76 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YP_2066 93d69075eac551af63fda386be6504a4 431 Hamap MF_01203 Voltage-gated ClC-type chloride channel ClcB [clcB]. 21 431 40.506 T 14-10-2018 IPR023790 Chloride channel, voltage-gated, ClcB GO:0006821|GO:0010447 YP_2066 93d69075eac551af63fda386be6504a4 431 SUPERFAMILY SSF81340 5 430 4.05E-87 T 14-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 YP_2066 93d69075eac551af63fda386be6504a4 431 PRINTS PR00762 Chloride channel signature 171 190 4.3E-23 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YP_2066 93d69075eac551af63fda386be6504a4 431 PRINTS PR00762 Chloride channel signature 370 386 4.3E-23 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YP_2066 93d69075eac551af63fda386be6504a4 431 PRINTS PR00762 Chloride channel signature 121 140 4.3E-23 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YP_2066 93d69075eac551af63fda386be6504a4 431 PRINTS PR00762 Chloride channel signature 335 355 4.3E-23 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YP_2066 93d69075eac551af63fda386be6504a4 431 PRINTS PR00762 Chloride channel signature 388 407 4.3E-23 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YP_0842 8f0d4507047df8a8f69a79c5df35551f 289 Pfam PF14561 Tetratricopeptide repeat 200 289 3.6E-30 T 14-10-2018 YP_0842 8f0d4507047df8a8f69a79c5df35551f 289 Gene3D G3DSA:3.40.30.10 3 111 3.8E-27 T 14-10-2018 YP_0842 8f0d4507047df8a8f69a79c5df35551f 289 SUPERFAMILY SSF48452 120 242 1.23E-6 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_0842 8f0d4507047df8a8f69a79c5df35551f 289 Pfam PF14559 Tetratricopeptide repeat 124 195 3.2E-18 T 14-10-2018 YP_0842 8f0d4507047df8a8f69a79c5df35551f 289 SUPERFAMILY SSF52833 4 113 5.69E-30 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_0842 8f0d4507047df8a8f69a79c5df35551f 289 Gene3D G3DSA:1.25.40.10 202 289 6.2E-26 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_0842 8f0d4507047df8a8f69a79c5df35551f 289 Pfam PF00085 Thioredoxin 7 107 4.9E-18 T 14-10-2018 IPR013766 Thioredoxin domain GO:0045454 YP_0842 8f0d4507047df8a8f69a79c5df35551f 289 Gene3D G3DSA:1.25.40.10 112 201 1.0E-22 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_0481 4f5a5dd31335cf1c451aa5cafec08ef6 105 SUPERFAMILY SSF54909 2 104 1.97E-37 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel YP_0481 4f5a5dd31335cf1c451aa5cafec08ef6 105 Gene3D G3DSA:3.30.70.100 2 98 2.8E-38 T 14-10-2018 YP_0481 4f5a5dd31335cf1c451aa5cafec08ef6 105 Hamap MF_01663 L-rhamnose mutarotase [rhaM]. 2 105 31.791 T 14-10-2018 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 YP_0481 4f5a5dd31335cf1c451aa5cafec08ef6 105 Pfam PF05336 L-rhamnose mutarotase 4 104 3.4E-28 T 14-10-2018 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 YP_0481 4f5a5dd31335cf1c451aa5cafec08ef6 105 TIGRFAM TIGR02625 YiiL_rotase: L-rhamnose mutarotase 4 105 1.6E-56 T 14-10-2018 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 YP_1882 fdff0d1ee2da653d4ef444216694084e 197 Pfam PF07273 Protein of unknown function (DUF1439) 39 190 1.7E-58 T 14-10-2018 IPR010835 Protein of unknown function DUF1439 YP_1882 fdff0d1ee2da653d4ef444216694084e 197 Gene3D G3DSA:3.15.10.40 27 197 4.9E-71 T 14-10-2018 YP_0929 4658a91337d16035c95082e0abcfe62c 402 ProSitePatterns PS00594 Aromatic amino acids permeases signature. 17 33 - T 14-10-2018 IPR013061 Tryptophan/tryrosine permease, conserved site YP_0929 4658a91337d16035c95082e0abcfe62c 402 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 7 383 3.3E-136 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_0929 4658a91337d16035c95082e0abcfe62c 402 Pfam PF03222 Tryptophan/tyrosine permease family 3 389 4.5E-134 T 14-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 YP_0929 4658a91337d16035c95082e0abcfe62c 402 Gene3D G3DSA:1.20.1740.10 2 400 2.0E-5 T 14-10-2018 YP_0929 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 148 168 5.4E-90 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_0929 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 221 240 5.4E-90 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_0929 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 37 56 5.4E-90 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_0929 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 316 334 5.4E-90 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_0929 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 82 102 5.4E-90 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_0929 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 282 301 5.4E-90 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_0929 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 337 356 5.4E-90 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_0929 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 10 33 5.4E-90 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_0929 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 182 204 5.4E-90 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_2490 a6775f88d4835f7d8a90dc4ff8a02fab 142 SUPERFAMILY SSF103481 41 141 2.48E-14 T 14-10-2018 YP_2490 a6775f88d4835f7d8a90dc4ff8a02fab 142 Pfam PF00892 EamA-like transporter family 4 140 2.7E-21 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 SUPERFAMILY SSF82866 812 1010 9.29E-42 T 14-10-2018 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 SUPERFAMILY SSF82693 555 650 1.55E-17 T 14-10-2018 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 Gene3D G3DSA:3.30.2090.10 179 269 4.4E-293 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 Gene3D G3DSA:3.30.70.1440 650 847 4.4E-293 T 14-10-2018 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 SUPERFAMILY SSF82693 136 324 1.39E-21 T 14-10-2018 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 SUPERFAMILY SSF82714 703 785 3.01E-16 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 Hamap MF_01424 Multidrug resistance protein MdtC [mdtC]. 1 1024 26.981 T 14-10-2018 IPR023931 Multidrug resistance protein MdtC YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 Pfam PF00873 AcrB/AcrD/AcrF family 4 1008 0.0 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 SUPERFAMILY SSF82866 290 491 6.02E-47 T 14-10-2018 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 Gene3D G3DSA:3.30.70.1430 40 797 4.4E-293 T 14-10-2018 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 SUPERFAMILY SSF82693 665 833 1.52E-5 T 14-10-2018 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 Gene3D G3DSA:1.20.1640.10 10 502 4.4E-293 T 14-10-2018 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 Gene3D G3DSA:3.30.2090.10 701 789 4.4E-293 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 3.8E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.8E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 PRINTS PR00702 Acriflavin resistance protein family signature 542 559 3.8E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 PRINTS PR00702 Acriflavin resistance protein family signature 605 619 3.8E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 3.8E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.8E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 3.8E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 3.8E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 3.8E-86 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 Gene3D G3DSA:3.30.70.1430 557 649 4.4E-293 T 14-10-2018 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 SUPERFAMILY SSF82714 183 265 1.14E-15 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 Gene3D G3DSA:1.20.1640.10 503 1005 4.4E-293 T 14-10-2018 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 Gene3D G3DSA:3.30.70.1320 135 326 4.4E-293 T 14-10-2018 YP_2716 2a5167f5896e0a3d11462c23c755bd2f 1024 SUPERFAMILY SSF82693 40 135 1.62E-23 T 14-10-2018 YP_3039 5c2610ea0c5837b523582752c8cef9c3 261 Pfam PF00460 Flagella basal body rod protein 5 35 1.7E-10 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YP_3039 5c2610ea0c5837b523582752c8cef9c3 261 SUPERFAMILY SSF117143 92 222 4.45E-37 T 14-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YP_3039 5c2610ea0c5837b523582752c8cef9c3 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 258 4.8E-27 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_3039 5c2610ea0c5837b523582752c8cef9c3 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 3.6E-109 T 14-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 YP_3039 5c2610ea0c5837b523582752c8cef9c3 261 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 14-10-2018 IPR019776 Flagellar basal body rod protein, conserved site YP_3039 5c2610ea0c5837b523582752c8cef9c3 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 144 243 1.4E-34 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YP_3039 5c2610ea0c5837b523582752c8cef9c3 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 136 9.7E-43 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YP_0211 b809f598f80073bab3bc75627b009ce4 92 Gene3D G3DSA:3.30.860.10 1 92 3.9E-43 T 14-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0211 b809f598f80073bab3bc75627b009ce4 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 1.1E-45 T 14-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 YP_0211 b809f598f80073bab3bc75627b009ce4 92 Pfam PF00203 Ribosomal protein S19 3 83 1.3E-35 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0211 b809f598f80073bab3bc75627b009ce4 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.5E-24 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0211 b809f598f80073bab3bc75627b009ce4 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.5E-24 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0211 b809f598f80073bab3bc75627b009ce4 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.5E-24 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0211 b809f598f80073bab3bc75627b009ce4 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 14-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0211 b809f598f80073bab3bc75627b009ce4 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.571 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0211 b809f598f80073bab3bc75627b009ce4 92 PIRSF PIRSF002144 1 92 2.2E-31 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0211 b809f598f80073bab3bc75627b009ce4 92 SUPERFAMILY SSF54570 3 84 5.75E-35 T 14-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_2969 e471cfd367950edb10e6cb00eaae55be 481 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 56 79 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 YP_2969 e471cfd367950edb10e6cb00eaae55be 481 Gene3D G3DSA:3.40.1190.20 7 314 8.5E-109 T 14-10-2018 IPR029056 Ribokinase-like YP_2969 e471cfd367950edb10e6cb00eaae55be 481 Pfam PF01467 Cytidylyltransferase-like 350 474 1.0E-15 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 YP_2969 e471cfd367950edb10e6cb00eaae55be 481 SUPERFAMILY SSF53613 17 315 2.18E-55 T 14-10-2018 IPR029056 Ribokinase-like YP_2969 e471cfd367950edb10e6cb00eaae55be 481 SUPERFAMILY SSF52374 345 475 3.56E-22 T 14-10-2018 YP_2969 e471cfd367950edb10e6cb00eaae55be 481 Hamap MF_01603 Bifunctional protein HldE [hldE]. 9 479 43.119 T 14-10-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 YP_2969 e471cfd367950edb10e6cb00eaae55be 481 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 337 477 2.3E-63 T 14-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 YP_2969 e471cfd367950edb10e6cb00eaae55be 481 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 347 413 6.7E-18 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 YP_2969 e471cfd367950edb10e6cb00eaae55be 481 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 11 317 1.1E-125 T 14-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 YP_2969 e471cfd367950edb10e6cb00eaae55be 481 Gene3D G3DSA:3.40.50.620 323 480 5.9E-39 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_2969 e471cfd367950edb10e6cb00eaae55be 481 Pfam PF00294 pfkB family carbohydrate kinase 18 310 1.6E-50 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB YP_1310 b698f5efc15101de2fd69a2b3b0760c2 253 SUPERFAMILY SSF46785 7 76 1.18E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1310 b698f5efc15101de2fd69a2b3b0760c2 253 Gene3D G3DSA:1.10.10.10 1 72 2.9E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1310 b698f5efc15101de2fd69a2b3b0760c2 253 Pfam PF07729 FCD domain 96 222 4.1E-22 T 14-10-2018 IPR011711 GntR, C-terminal YP_1310 b698f5efc15101de2fd69a2b3b0760c2 253 SMART SM00895 96 223 8.1E-22 T 14-10-2018 IPR011711 GntR, C-terminal YP_1310 b698f5efc15101de2fd69a2b3b0760c2 253 SUPERFAMILY SSF48008 94 230 1.99E-26 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_1310 b698f5efc15101de2fd69a2b3b0760c2 253 SMART SM00345 13 72 2.3E-24 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_1310 b698f5efc15101de2fd69a2b3b0760c2 253 Gene3D G3DSA:1.20.120.530 91 232 5.7E-24 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_1310 b698f5efc15101de2fd69a2b3b0760c2 253 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 72 1.8E-23 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_1310 b698f5efc15101de2fd69a2b3b0760c2 253 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 8.0E-8 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_1310 b698f5efc15101de2fd69a2b3b0760c2 253 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 8.0E-8 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_2647 ca1c8965f8ac0ff6b854f433b390648d 299 Pfam PF00701 Dihydrodipicolinate synthetase family 6 291 2.1E-51 T 14-10-2018 IPR002220 DapA-like GO:0016829 YP_2647 ca1c8965f8ac0ff6b854f433b390648d 299 PIRSF PIRSF001365 1 299 7.3E-67 T 14-10-2018 IPR002220 DapA-like GO:0016829 YP_2647 ca1c8965f8ac0ff6b854f433b390648d 299 Gene3D G3DSA:3.20.20.70 3 299 1.6E-102 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_2647 ca1c8965f8ac0ff6b854f433b390648d 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 75 93 7.1E-7 T 14-10-2018 IPR002220 DapA-like GO:0016829 YP_2647 ca1c8965f8ac0ff6b854f433b390648d 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 39 60 7.1E-7 T 14-10-2018 IPR002220 DapA-like GO:0016829 YP_2647 ca1c8965f8ac0ff6b854f433b390648d 299 SUPERFAMILY SSF51569 1 294 7.12E-73 T 14-10-2018 YP_2647 ca1c8965f8ac0ff6b854f433b390648d 299 SMART SM01130 5 296 1.1E-68 T 14-10-2018 IPR002220 DapA-like GO:0016829 YP_2647 ca1c8965f8ac0ff6b854f433b390648d 299 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 42 59 - T 14-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YP_3301 3812c6e2a0c9f33e42cb961cf7fed2ea 478 SUPERFAMILY SSF53756 3 478 5.23E-116 T 14-10-2018 YP_3301 3812c6e2a0c9f33e42cb961cf7fed2ea 478 Hamap MF_00484 Glycogen synthase [glgA]. 3 478 45.804 T 14-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 YP_3301 3812c6e2a0c9f33e42cb961cf7fed2ea 478 Gene3D G3DSA:3.40.50.2000 5 475 3.2E-188 T 14-10-2018 YP_3301 3812c6e2a0c9f33e42cb961cf7fed2ea 478 Pfam PF00534 Glycosyl transferases group 1 289 450 8.7E-16 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 YP_3301 3812c6e2a0c9f33e42cb961cf7fed2ea 478 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 3 478 1.4E-168 T 14-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 YP_3301 3812c6e2a0c9f33e42cb961cf7fed2ea 478 Gene3D G3DSA:3.40.50.2000 251 460 3.2E-188 T 14-10-2018 YP_3301 3812c6e2a0c9f33e42cb961cf7fed2ea 478 Pfam PF08323 Starch synthase catalytic domain 4 235 2.0E-70 T 14-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 YP_pCD33 e91b9d881388234ae0510318f7a8b9f9 32 Pfam PF17551 Family of unknown function (DUF5463) 1 32 9.7E-27 T 14-10-2018 IPR035181 Protein of unknown function DUF5463 YP_pCD33 e91b9d881388234ae0510318f7a8b9f9 32 ProDom PD026112 PLASMID PROTEINS VIRULENCE YOP TRANSLOCATION A 1 32 2.0E-11 T 14-10-2018 IPR035181 Protein of unknown function DUF5463 YP_0483 6762615a2813540dff1ca14d94ac42f7 274 Hamap MF_00770 Rhamnulose-1-phosphate aldolase [rhaD]. 1 272 58.712 T 14-10-2018 IPR013447 Rhamnulose-1-phosphate aldolase GO:0008994|GO:0019301 KEGG: 00040+4.1.2.19|KEGG: 00051+4.1.2.19 YP_0483 6762615a2813540dff1ca14d94ac42f7 274 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 12 238 8.9E-39 T 14-10-2018 IPR001303 Class II aldolase/adducin N-terminal YP_0483 6762615a2813540dff1ca14d94ac42f7 274 TIGRFAM TIGR02624 rhamnu_1P_ald: rhamnulose-1-phosphate aldolase 1 272 2.7E-143 T 14-10-2018 IPR013447 Rhamnulose-1-phosphate aldolase GO:0008994|GO:0019301 KEGG: 00040+4.1.2.19|KEGG: 00051+4.1.2.19 YP_0483 6762615a2813540dff1ca14d94ac42f7 274 SMART SM01007 11 239 1.7E-34 T 14-10-2018 IPR001303 Class II aldolase/adducin N-terminal YP_0483 6762615a2813540dff1ca14d94ac42f7 274 SUPERFAMILY SSF53639 1 270 5.69E-75 T 14-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YP_0483 6762615a2813540dff1ca14d94ac42f7 274 Gene3D G3DSA:3.40.225.10 1 274 3.8E-88 T 14-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YP_0214 d252f117c8daca16b432349f8e30f5bd 136 SUPERFAMILY SSF54686 3 133 4.84E-55 T 14-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 YP_0214 d252f117c8daca16b432349f8e30f5bd 136 Gene3D G3DSA:3.90.1170.10 1 136 1.3E-55 T 14-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 YP_0214 d252f117c8daca16b432349f8e30f5bd 136 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 58 69 - T 14-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0214 d252f117c8daca16b432349f8e30f5bd 136 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 133 37.821 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0214 d252f117c8daca16b432349f8e30f5bd 136 Pfam PF00252 Ribosomal protein L16p/L10e 4 131 9.2E-48 T 14-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 YP_0214 d252f117c8daca16b432349f8e30f5bd 136 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 81 92 - T 14-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0214 d252f117c8daca16b432349f8e30f5bd 136 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 4.3E-60 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0214 d252f117c8daca16b432349f8e30f5bd 136 PRINTS PR00060 Ribosomal protein L16 signature 23 35 1.0E-40 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0214 d252f117c8daca16b432349f8e30f5bd 136 PRINTS PR00060 Ribosomal protein L16 signature 57 86 1.0E-40 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0214 d252f117c8daca16b432349f8e30f5bd 136 PRINTS PR00060 Ribosomal protein L16 signature 41 52 1.0E-40 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0214 d252f117c8daca16b432349f8e30f5bd 136 PRINTS PR00060 Ribosomal protein L16 signature 87 116 1.0E-40 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2532 4d89e985b1600ee3d0b0aebd1d03c6c1 295 Pfam PF01380 SIS domain 127 208 2.9E-9 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YP_2532 4d89e985b1600ee3d0b0aebd1d03c6c1 295 Gene3D G3DSA:1.10.8.1080 219 295 1.2E-30 T 14-10-2018 YP_2532 4d89e985b1600ee3d0b0aebd1d03c6c1 295 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 2 295 43.497 T 14-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 YP_2532 4d89e985b1600ee3d0b0aebd1d03c6c1 295 SUPERFAMILY SSF53697 4 249 5.12E-75 T 14-10-2018 YP_2532 4d89e985b1600ee3d0b0aebd1d03c6c1 295 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 6 295 3.0E-129 T 14-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 YP_2532 4d89e985b1600ee3d0b0aebd1d03c6c1 295 Gene3D G3DSA:3.40.50.10490 1 218 1.6E-84 T 14-10-2018 YP_2532 4d89e985b1600ee3d0b0aebd1d03c6c1 295 SUPERFAMILY SSF46934 239 277 5.19E-5 T 14-10-2018 IPR009060 UBA-like superfamily GO:0005515 YP_2532 4d89e985b1600ee3d0b0aebd1d03c6c1 295 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 185 202 - T 14-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 YP_0534 29bf569618d00089aea3527111a1600b 436 Gene3D G3DSA:3.90.170.10 271 436 1.1E-71 T 14-10-2018 YP_0534 29bf569618d00089aea3527111a1600b 436 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 15 22 - T 14-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 YP_0534 29bf569618d00089aea3527111a1600b 436 Pfam PF00709 Adenylosuccinate synthetase 9 427 6.3E-179 T 14-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 YP_0534 29bf569618d00089aea3527111a1600b 436 SUPERFAMILY SSF52540 7 435 3.93E-178 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0534 29bf569618d00089aea3527111a1600b 436 SMART SM00788 8 429 8.2E-298 T 14-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 YP_0534 29bf569618d00089aea3527111a1600b 436 Gene3D G3DSA:3.40.440.10 10 259 2.6E-106 T 14-10-2018 YP_0534 29bf569618d00089aea3527111a1600b 436 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 436 217.55 T 14-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 YP_0534 29bf569618d00089aea3527111a1600b 436 Gene3D G3DSA:1.10.300.10 106 205 2.6E-106 T 14-10-2018 YP_0534 29bf569618d00089aea3527111a1600b 436 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 137 148 - T 14-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 YP_0534 29bf569618d00089aea3527111a1600b 436 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 10 434 1.7E-202 T 14-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 YP_2961 00235c745d8298a44729e9f9ec274d28 337 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 14-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 YP_2961 00235c745d8298a44729e9f9ec274d28 337 Gene3D G3DSA:3.30.420.40 3 314 2.0E-132 T 14-10-2018 YP_2961 00235c745d8298a44729e9f9ec274d28 337 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 306 4.1E-126 T 14-10-2018 IPR017861 Kae1/TsaD family YP_2961 00235c745d8298a44729e9f9ec274d28 337 SUPERFAMILY SSF53067 1 309 3.74E-43 T 14-10-2018 YP_2961 00235c745d8298a44729e9f9ec274d28 337 Pfam PF00814 Glycoprotease family 24 307 1.0E-102 T 14-10-2018 IPR000905 Gcp-like domain YP_2961 00235c745d8298a44729e9f9ec274d28 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 1.5E-52 T 14-10-2018 IPR017861 Kae1/TsaD family YP_2961 00235c745d8298a44729e9f9ec274d28 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 263 272 1.5E-52 T 14-10-2018 IPR017861 Kae1/TsaD family YP_2961 00235c745d8298a44729e9f9ec274d28 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 1.5E-52 T 14-10-2018 IPR017861 Kae1/TsaD family YP_2961 00235c745d8298a44729e9f9ec274d28 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 1.5E-52 T 14-10-2018 IPR017861 Kae1/TsaD family YP_2961 00235c745d8298a44729e9f9ec274d28 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 1.5E-52 T 14-10-2018 IPR017861 Kae1/TsaD family YP_2961 00235c745d8298a44729e9f9ec274d28 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 1.5E-52 T 14-10-2018 IPR017861 Kae1/TsaD family YP_2961 00235c745d8298a44729e9f9ec274d28 337 Gene3D G3DSA:3.30.420.40 129 293 2.0E-132 T 14-10-2018 YP_2961 00235c745d8298a44729e9f9ec274d28 337 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 331 64.249 T 14-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 YP_2961 00235c745d8298a44729e9f9ec274d28 337 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 313 7.6E-135 T 14-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 YP_1001 b4f0105ad7b8fc23b5646c6619ad2747 307 Hamap MF_00973 Gluconeogenesis factor. 8 300 31.733 T 14-10-2018 IPR010119 Gluconeogenesis factor YP_1001 b4f0105ad7b8fc23b5646c6619ad2747 307 Gene3D G3DSA:3.40.50.12300 9 302 5.7E-76 T 14-10-2018 IPR038136 Gluconeogenesis factor superfamily YP_1001 b4f0105ad7b8fc23b5646c6619ad2747 307 Pfam PF01933 Uncharacterised protein family UPF0052 12 292 5.1E-73 T 14-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 YP_1001 b4f0105ad7b8fc23b5646c6619ad2747 307 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 12 261 3.0E-94 T 14-10-2018 IPR010119 Gluconeogenesis factor YP_1001 b4f0105ad7b8fc23b5646c6619ad2747 307 SUPERFAMILY SSF142338 11 295 2.75E-80 T 14-10-2018 YP_0697 2e8ef3a784bdb7e4400093366f977dc3 200 PIRSF PIRSF006102 2 200 2.5E-64 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YP_0697 2e8ef3a784bdb7e4400093366f977dc3 200 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 4 199 5.9E-103 T 14-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 YP_0697 2e8ef3a784bdb7e4400093366f977dc3 200 Pfam PF02508 Rnf-Nqr subunit, membrane protein 6 198 7.1E-58 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YP_0697 2e8ef3a784bdb7e4400093366f977dc3 200 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 3 200 29.32 T 14-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 YP_2087 d25d4a46bcfc594342ba9ec62b796d90 464 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 460 1.4E-203 T 14-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 YP_2087 d25d4a46bcfc594342ba9ec62b796d90 464 SUPERFAMILY SSF52467 289 463 5.61E-77 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily YP_2087 d25d4a46bcfc594342ba9ec62b796d90 464 Gene3D G3DSA:3.40.50.1220 286 464 2.0E-86 T 14-10-2018 YP_2087 d25d4a46bcfc594342ba9ec62b796d90 464 PIRSF PIRSF000204 1 464 1.9E-238 T 14-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 YP_0537 7745485a985630edd20fe351112049f0 246 Pfam PF00588 SpoU rRNA Methylase family 96 236 1.3E-39 T 14-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 YP_0537 7745485a985630edd20fe351112049f0 246 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 1 242 6.4E-90 T 14-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 YP_0537 7745485a985630edd20fe351112049f0 246 Gene3D G3DSA:3.30.1330.30 1 75 2.1E-29 T 14-10-2018 IPR029064 50S ribosomal protein L30e-like YP_0537 7745485a985630edd20fe351112049f0 246 Gene3D G3DSA:3.40.1280.10 77 243 5.1E-66 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YP_0537 7745485a985630edd20fe351112049f0 246 SUPERFAMILY SSF55315 2 75 4.94E-20 T 14-10-2018 IPR029064 50S ribosomal protein L30e-like YP_0537 7745485a985630edd20fe351112049f0 246 SMART SM00967 4 80 1.1E-21 T 14-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 YP_0537 7745485a985630edd20fe351112049f0 246 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 4 76 2.1E-19 T 14-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 YP_0537 7745485a985630edd20fe351112049f0 246 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 2 243 44.264 T 14-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB YP_0537 7745485a985630edd20fe351112049f0 246 SUPERFAMILY SSF75217 69 243 5.62E-49 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases YP_0706 6c78c3397caa833d0385c56c34e23f75 534 SUPERFAMILY SSF81296 38 244 4.76E-39 T 14-10-2018 IPR014756 Immunoglobulin E-set YP_0706 6c78c3397caa833d0385c56c34e23f75 534 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 38 241 1.3E-32 T 14-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal YP_0706 6c78c3397caa833d0385c56c34e23f75 534 Gene3D G3DSA:2.60.40.10 359 448 1.1E-13 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_0706 6c78c3397caa833d0385c56c34e23f75 534 SUPERFAMILY SSF49299 364 450 1.96E-8 T 14-10-2018 IPR035986 PKD domain superfamily YP_0706 6c78c3397caa833d0385c56c34e23f75 534 Gene3D G3DSA:2.70.50.50 38 246 9.7E-56 T 14-10-2018 YP_0706 6c78c3397caa833d0385c56c34e23f75 534 SMART SM00089 367 451 2.8E-4 T 14-10-2018 IPR022409 PKD/Chitinase domain YP_2655 8ecb64d120c024a3322f2028315e855a 309 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 3 277 56.517 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YP_2655 8ecb64d120c024a3322f2028315e855a 309 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 166 190 - T 14-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YP_2655 8ecb64d120c024a3322f2028315e855a 309 Pfam PF01218 Coproporphyrinogen III oxidase 9 302 3.2E-131 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YP_2655 8ecb64d120c024a3322f2028315e855a 309 PIRSF PIRSF000166 2 303 1.1E-127 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YP_2655 8ecb64d120c024a3322f2028315e855a 309 Gene3D G3DSA:3.40.1500.10 1 302 2.5E-134 T 14-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YP_2655 8ecb64d120c024a3322f2028315e855a 309 PRINTS PR00073 Coprogen oxidase signature 262 288 8.7E-86 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YP_2655 8ecb64d120c024a3322f2028315e855a 309 PRINTS PR00073 Coprogen oxidase signature 48 69 8.7E-86 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YP_2655 8ecb64d120c024a3322f2028315e855a 309 PRINTS PR00073 Coprogen oxidase signature 90 114 8.7E-86 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YP_2655 8ecb64d120c024a3322f2028315e855a 309 PRINTS PR00073 Coprogen oxidase signature 162 191 8.7E-86 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YP_2655 8ecb64d120c024a3322f2028315e855a 309 PRINTS PR00073 Coprogen oxidase signature 31 47 8.7E-86 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YP_2655 8ecb64d120c024a3322f2028315e855a 309 PRINTS PR00073 Coprogen oxidase signature 125 147 8.7E-86 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YP_2655 8ecb64d120c024a3322f2028315e855a 309 PRINTS PR00073 Coprogen oxidase signature 234 261 8.7E-86 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YP_2655 8ecb64d120c024a3322f2028315e855a 309 SUPERFAMILY SSF102886 5 302 7.59E-139 T 14-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YP_2503 93965d6c7d19a642b52bc351940979ac 316 SMART SM00797 23 298 3.6E-146 T 14-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B YP_2503 93965d6c7d19a642b52bc351940979ac 316 Gene3D G3DSA:2.40.100.10 170 309 2.7E-55 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily YP_2503 93965d6c7d19a642b52bc351940979ac 316 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 1 307 3.7E-119 T 14-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B YP_2503 93965d6c7d19a642b52bc351940979ac 316 SUPERFAMILY SSF50891 173 288 1.14E-11 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily YP_2503 93965d6c7d19a642b52bc351940979ac 316 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 24 281 5.2E-90 T 14-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B YP_2978 eb73c07006da741b4626859384ef1e21 467 SUPERFAMILY SSF56954 27 443 2.88E-93 T 14-10-2018 YP_2978 eb73c07006da741b4626859384ef1e21 467 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 23 442 1.1E-129 T 14-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 YP_2978 eb73c07006da741b4626859384ef1e21 467 Gene3D G3DSA:1.20.1600.10 25 449 6.5E-145 T 14-10-2018 YP_2978 eb73c07006da741b4626859384ef1e21 467 Pfam PF02321 Outer membrane efflux protein 27 212 3.0E-27 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 YP_2978 eb73c07006da741b4626859384ef1e21 467 Pfam PF02321 Outer membrane efflux protein 235 426 8.2E-34 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 YP_0428 60e5698e220bdbf6931750a923c372a8 356 SUPERFAMILY SSF160544 239 345 1.06E-31 T 14-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal YP_0428 60e5698e220bdbf6931750a923c372a8 356 TIGRFAM TIGR01404 FlhB_rel_III: type III secretion protein, YscU/HrpY family 5 343 1.4E-117 T 14-10-2018 IPR006307 Type III exporter system, secretion apparatus protein BsaZ GO:0009306|GO:0016021 YP_0428 60e5698e220bdbf6931750a923c372a8 356 Pfam PF01312 FlhB HrpN YscU SpaS Family 5 341 5.0E-104 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_0428 60e5698e220bdbf6931750a923c372a8 356 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 7 29 3.0E-39 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_0428 60e5698e220bdbf6931750a923c372a8 356 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 223 240 3.0E-39 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_0428 60e5698e220bdbf6931750a923c372a8 356 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 203 221 3.0E-39 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_0428 60e5698e220bdbf6931750a923c372a8 356 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 297 318 3.0E-39 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_0428 60e5698e220bdbf6931750a923c372a8 356 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 267 282 3.0E-39 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_0428 60e5698e220bdbf6931750a923c372a8 356 Gene3D G3DSA:3.40.1690.10 212 352 6.9E-50 T 14-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal YP_0639 40c72c776434f96a939bc99fc4845be9 143 Hamap MF_01888 Regulator of ribonuclease activity B [rraB]. 4 117 30.951 T 14-10-2018 IPR016716 Regulator of ribonuclease activity B YP_0639 40c72c776434f96a939bc99fc4845be9 143 SUPERFAMILY SSF89946 3 123 5.62E-42 T 14-10-2018 IPR036701 RraB-like superfamily YP_0639 40c72c776434f96a939bc99fc4845be9 143 Pfam PF06877 Regulator of ribonuclease activity B 12 113 1.6E-34 T 14-10-2018 IPR009671 Regulator of ribonuclease activity B domain YP_0639 40c72c776434f96a939bc99fc4845be9 143 PIRSF PIRSF018193 1 143 2.2E-68 T 14-10-2018 IPR016716 Regulator of ribonuclease activity B YP_0639 40c72c776434f96a939bc99fc4845be9 143 Gene3D G3DSA:3.30.70.970 1 125 2.3E-49 T 14-10-2018 IPR036701 RraB-like superfamily YP_2618 90698f324e7b2f882bc5dfbfdbc4a362 85 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 14-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YP_2618 90698f324e7b2f882bc5dfbfdbc4a362 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 9.7E-31 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_2618 90698f324e7b2f882bc5dfbfdbc4a362 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 14-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YP_2618 90698f324e7b2f882bc5dfbfdbc4a362 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.1E-19 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_2618 90698f324e7b2f882bc5dfbfdbc4a362 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.1E-19 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_2618 90698f324e7b2f882bc5dfbfdbc4a362 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.1E-19 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_2618 90698f324e7b2f882bc5dfbfdbc4a362 85 Pfam PF00381 PTS HPr component phosphorylation site 3 82 6.1E-28 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_2618 90698f324e7b2f882bc5dfbfdbc4a362 85 Gene3D G3DSA:3.30.1340.10 1 85 5.7E-35 T 14-10-2018 IPR035895 HPr-like superfamily YP_2618 90698f324e7b2f882bc5dfbfdbc4a362 85 SUPERFAMILY SSF55594 1 82 7.59E-27 T 14-10-2018 IPR035895 HPr-like superfamily YP_2514 6835bb76b6d4dbe5549725444545d022 545 SUPERFAMILY SSF46977 437 537 7.06E-32 T 14-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_2514 6835bb76b6d4dbe5549725444545d022 545 Gene3D G3DSA:3.50.50.60 22 416 4.3E-154 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2514 6835bb76b6d4dbe5549725444545d022 545 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 21 532 8.0E-224 T 14-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 YP_2514 6835bb76b6d4dbe5549725444545d022 545 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 23 42 1.3E-9 T 14-10-2018 YP_2514 6835bb76b6d4dbe5549725444545d022 545 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 367 389 1.3E-9 T 14-10-2018 YP_2514 6835bb76b6d4dbe5549725444545d022 545 Gene3D G3DSA:1.20.58.100 437 545 5.1E-46 T 14-10-2018 YP_2514 6835bb76b6d4dbe5549725444545d022 545 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 534 1.1E-14 T 14-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_2514 6835bb76b6d4dbe5549725444545d022 545 Pfam PF00890 FAD binding domain 22 404 6.8E-101 T 14-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_2514 6835bb76b6d4dbe5549725444545d022 545 SUPERFAMILY SSF51905 18 459 1.75E-73 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2514 6835bb76b6d4dbe5549725444545d022 545 PIRSF PIRSF000171 351 543 2.3E-13 T 14-10-2018 YP_2514 6835bb76b6d4dbe5549725444545d022 545 PIRSF PIRSF000171 12 261 6.4E-23 T 14-10-2018 YP_2514 6835bb76b6d4dbe5549725444545d022 545 Gene3D G3DSA:3.90.700.10 260 370 4.3E-154 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_2514 6835bb76b6d4dbe5549725444545d022 545 SUPERFAMILY SSF56425 250 365 2.84E-41 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_2989 c1b0a5054a447b475759df96ed6c90e2 474 Gene3D G3DSA:2.60.40.420 166 346 5.5E-54 T 14-10-2018 IPR008972 Cupredoxin YP_2989 c1b0a5054a447b475759df96ed6c90e2 474 Pfam PF07731 Multicopper oxidase 362 468 1.0E-13 T 14-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 YP_2989 c1b0a5054a447b475759df96ed6c90e2 474 Hamap MF_00915 Cell division protein FtsP [ftsP]. 1 469 57.314 T 14-10-2018 IPR026589 Cell division protein FtsP GO:0043093 YP_2989 c1b0a5054a447b475759df96ed6c90e2 474 SUPERFAMILY SSF49503 173 296 5.37E-31 T 14-10-2018 IPR008972 Cupredoxin YP_2989 c1b0a5054a447b475759df96ed6c90e2 474 Gene3D G3DSA:2.60.40.420 29 165 2.1E-31 T 14-10-2018 IPR008972 Cupredoxin YP_2989 c1b0a5054a447b475759df96ed6c90e2 474 Gene3D G3DSA:2.60.40.420 347 472 1.9E-23 T 14-10-2018 IPR008972 Cupredoxin YP_2989 c1b0a5054a447b475759df96ed6c90e2 474 Pfam PF07732 Multicopper oxidase 53 167 6.3E-26 T 14-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 YP_2989 c1b0a5054a447b475759df96ed6c90e2 474 SUPERFAMILY SSF49503 3 166 3.88E-26 T 14-10-2018 IPR008972 Cupredoxin YP_2989 c1b0a5054a447b475759df96ed6c90e2 474 SUPERFAMILY SSF49503 316 467 2.6E-17 T 14-10-2018 IPR008972 Cupredoxin YP_0779 6c99e95cf2618c43c2c58173773ddd7a 148 SUPERFAMILY SSF47781 72 146 7.34E-24 T 14-10-2018 IPR010994 RuvA domain 2-like YP_0779 6c99e95cf2618c43c2c58173773ddd7a 148 Pfam PF12836 Helix-hairpin-helix motif 83 146 1.2E-21 T 14-10-2018 YP_0779 6c99e95cf2618c43c2c58173773ddd7a 148 Gene3D G3DSA:1.10.150.280 74 146 5.8E-20 T 14-10-2018 YP_0779 6c99e95cf2618c43c2c58173773ddd7a 148 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 80 146 4.5E-24 T 14-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain YP_3408 7c97f92d52fee42cb10e990551e6f5bc 224 SUPERFAMILY SSF46689 110 211 1.13E-13 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3408 7c97f92d52fee42cb10e990551e6f5bc 224 SUPERFAMILY SSF48295 43 106 4.45E-13 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 YP_3408 7c97f92d52fee42cb10e990551e6f5bc 224 Pfam PF13518 Helix-turn-helix domain 61 106 7.0E-9 T 14-10-2018 YP_3408 7c97f92d52fee42cb10e990551e6f5bc 224 Pfam PF13518 Helix-turn-helix domain 116 168 1.2E-11 T 14-10-2018 YP_3833 9e2c20bd46ee3d10fe826b7d9761d384 187 Gene3D G3DSA:3.40.50.1000 2 187 8.9E-59 T 14-10-2018 IPR023214 HAD superfamily YP_3833 9e2c20bd46ee3d10fe826b7d9761d384 187 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 25 177 4.9E-69 T 14-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 YP_3833 9e2c20bd46ee3d10fe826b7d9761d384 187 PIRSF PIRSF006118 12 187 1.2E-72 T 14-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 YP_3833 9e2c20bd46ee3d10fe826b7d9761d384 187 SUPERFAMILY SSF56784 21 179 2.93E-41 T 14-10-2018 IPR036412 HAD-like superfamily YP_3833 9e2c20bd46ee3d10fe826b7d9761d384 187 Pfam PF08282 haloacid dehalogenase-like hydrolase 94 157 3.4E-10 T 14-10-2018 YP_3037 878a2132b5096452982b42c0fd8273f6 413 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 14-10-2018 IPR019776 Flagellar basal body rod protein, conserved site YP_3037 878a2132b5096452982b42c0fd8273f6 413 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 340 410 5.1E-16 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_3037 878a2132b5096452982b42c0fd8273f6 413 SUPERFAMILY SSF117143 73 374 6.8E-74 T 14-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YP_3037 878a2132b5096452982b42c0fd8273f6 413 Pfam PF07559 Flagellar basal body protein FlaE 170 294 2.1E-19 T 14-10-2018 IPR011491 Flagellar hook protein FlgE YP_3037 878a2132b5096452982b42c0fd8273f6 413 Gene3D G3DSA:2.60.98.20 144 295 2.3E-25 T 14-10-2018 IPR037058 Flagellar hook protein FlgE superfamily YP_3037 878a2132b5096452982b42c0fd8273f6 413 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 395 5.6E-96 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YP_3037 878a2132b5096452982b42c0fd8273f6 413 Pfam PF00460 Flagella basal body rod protein 4 33 4.2E-8 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YP_3538 3dbe260e913c3673f43d14965909f04c 535 Pfam PF00884 Sulfatase 34 384 2.6E-73 T 14-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 YP_3538 3dbe260e913c3673f43d14965909f04c 535 ProSitePatterns PS00149 Sulfatases signature 2. 151 161 - T 14-10-2018 IPR024607 Sulfatase, conserved site YP_3538 3dbe260e913c3673f43d14965909f04c 535 Gene3D G3DSA:3.30.1120.10 450 517 3.8E-12 T 14-10-2018 YP_3538 3dbe260e913c3673f43d14965909f04c 535 SUPERFAMILY SSF53649 32 519 2.76E-108 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YP_3538 3dbe260e913c3673f43d14965909f04c 535 Gene3D G3DSA:3.40.720.10 30 429 3.1E-98 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YP_3843 6d4ab07d6fb06500e3983b10b5109364 156 ProDom PD006194 REGULATORY ASPARTATE CARBAMOYLTRANSFERASE CHAIN METAL-BINDING ZINC PYRIMIDINE BIOSYNTHESIS SUBUNIT TRANSFERASE 11 101 2.0E-47 T 14-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal YP_3843 6d4ab07d6fb06500e3983b10b5109364 156 SUPERFAMILY SSF54893 4 102 1.06E-34 T 14-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily YP_3843 6d4ab07d6fb06500e3983b10b5109364 156 SUPERFAMILY SSF57825 104 151 1.57E-14 T 14-10-2018 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily YP_3843 6d4ab07d6fb06500e3983b10b5109364 156 Pfam PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain 9 99 1.3E-29 T 14-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal YP_3843 6d4ab07d6fb06500e3983b10b5109364 156 Gene3D G3DSA:3.30.70.140 3 102 1.3E-36 T 14-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily YP_3843 6d4ab07d6fb06500e3983b10b5109364 156 Gene3D G3DSA:2.30.30.20 103 155 6.9E-25 T 14-10-2018 YP_3843 6d4ab07d6fb06500e3983b10b5109364 156 Pfam PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain 104 149 1.7E-18 T 14-10-2018 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal YP_3843 6d4ab07d6fb06500e3983b10b5109364 156 Hamap MF_00002 Aspartate carbamoyltransferase regulatory chain [pyrI]. 6 154 32.35 T 14-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 YP_3843 6d4ab07d6fb06500e3983b10b5109364 156 TIGRFAM TIGR00240 ATCase_reg: aspartate carbamoyltransferase, regulatory subunit 8 152 2.6E-64 T 14-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 YP_2422 1ee398e8338b074a04c29f3f0badebd6 408 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 2 112 8.2E-31 T 14-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI YP_2422 1ee398e8338b074a04c29f3f0badebd6 408 SUPERFAMILY SSF48452 162 268 8.73E-17 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2422 1ee398e8338b074a04c29f3f0badebd6 408 Pfam PF14559 Tetratricopeptide repeat 175 242 3.4E-11 T 14-10-2018 YP_2422 1ee398e8338b074a04c29f3f0badebd6 408 Gene3D G3DSA:1.25.40.10 152 293 1.5E-17 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_3639 623bdbdfc854b9740b5d527c278e3f35 151 Pfam PF06610 L-alanine exporter 11 147 8.1E-72 T 14-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 YP_3639 623bdbdfc854b9740b5d527c278e3f35 151 ProDom PD090021 MEMBRANE YGAW TRANSMEMBRANE INNER VV2263 Y3636 VC1828 VP1070 14 147 3.0E-61 T 14-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 YP_3639 623bdbdfc854b9740b5d527c278e3f35 151 Hamap MF_00914 L-alanine exporter AlaE [alaE]. 6 150 36.208 T 14-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 YP_2233 643bf0a6c7a29494749fb01ddde590d1 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 88 191 3.3E-12 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_2233 643bf0a6c7a29494749fb01ddde590d1 221 SUPERFAMILY SSF56784 6 216 2.49E-50 T 14-10-2018 IPR036412 HAD-like superfamily YP_2233 643bf0a6c7a29494749fb01ddde590d1 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 190 1.3E-25 T 14-10-2018 YP_2233 643bf0a6c7a29494749fb01ddde590d1 221 Gene3D G3DSA:1.10.150.240 20 91 2.2E-59 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YP_2233 643bf0a6c7a29494749fb01ddde590d1 221 Gene3D G3DSA:3.40.50.1000 10 202 2.2E-59 T 14-10-2018 IPR023214 HAD superfamily YP_2233 643bf0a6c7a29494749fb01ddde590d1 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 1.0E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_2233 643bf0a6c7a29494749fb01ddde590d1 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 1.0E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_2233 643bf0a6c7a29494749fb01ddde590d1 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 1.0E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_2233 643bf0a6c7a29494749fb01ddde590d1 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 1.0E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_0133 018af6798c3cd531dd7ae470b9b11bfd 771 Pfam PF02421 Ferrous iron transport protein B 5 163 2.6E-65 T 14-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 YP_0133 018af6798c3cd531dd7ae470b9b11bfd 771 Pfam PF07664 Ferrous iron transport protein B C terminus 456 508 7.7E-22 T 14-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 YP_0133 018af6798c3cd531dd7ae470b9b11bfd 771 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 688 1.8E-226 T 14-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 YP_0133 018af6798c3cd531dd7ae470b9b11bfd 771 Gene3D G3DSA:3.40.50.300 1 169 2.0E-48 T 14-10-2018 YP_0133 018af6798c3cd531dd7ae470b9b11bfd 771 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 161 1.0E-11 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YP_0133 018af6798c3cd531dd7ae470b9b11bfd 771 Pfam PF07670 Nucleoside recognition 354 444 8.8E-13 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 YP_0133 018af6798c3cd531dd7ae470b9b11bfd 771 Pfam PF07670 Nucleoside recognition 513 690 1.9E-36 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 YP_0133 018af6798c3cd531dd7ae470b9b11bfd 771 SUPERFAMILY SSF52540 4 168 3.76E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1036 c782f3af55a73339f2c85351710e716e 133 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 6 130 4.9E-50 T 14-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 YP_1036 c782f3af55a73339f2c85351710e716e 133 Pfam PF03061 Thioesterase superfamily 20 103 3.9E-16 T 14-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 YP_1036 c782f3af55a73339f2c85351710e716e 133 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 125 6.6E-42 T 14-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 YP_1036 c782f3af55a73339f2c85351710e716e 133 PIRSF PIRSF003230 1 133 1.8E-46 T 14-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 YP_1036 c782f3af55a73339f2c85351710e716e 133 Gene3D G3DSA:3.10.129.10 1 133 6.6E-41 T 14-10-2018 YP_1036 c782f3af55a73339f2c85351710e716e 133 SUPERFAMILY SSF54637 4 132 5.9E-38 T 14-10-2018 IPR029069 HotDog domain superfamily YP_1182 222e1b930f465b2c8bdde37fd1ae5aff 367 SUPERFAMILY SSF56935 28 367 7.06E-82 T 14-10-2018 YP_1182 222e1b930f465b2c8bdde37fd1ae5aff 367 Pfam PF00267 Gram-negative porin 33 367 7.4E-141 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_1182 222e1b930f465b2c8bdde37fd1ae5aff 367 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 58 69 2.5E-15 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_1182 222e1b930f465b2c8bdde37fd1ae5aff 367 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 103 113 2.5E-15 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_1182 222e1b930f465b2c8bdde37fd1ae5aff 367 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 319 336 2.5E-15 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_1182 222e1b930f465b2c8bdde37fd1ae5aff 367 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 160 171 2.5E-15 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_1182 222e1b930f465b2c8bdde37fd1ae5aff 367 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 237 249 2.5E-15 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_1182 222e1b930f465b2c8bdde37fd1ae5aff 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 28 44 1.0E-69 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_1182 222e1b930f465b2c8bdde37fd1ae5aff 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 57 75 1.0E-69 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_1182 222e1b930f465b2c8bdde37fd1ae5aff 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 243 260 1.0E-69 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_1182 222e1b930f465b2c8bdde37fd1ae5aff 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 103 125 1.0E-69 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_1182 222e1b930f465b2c8bdde37fd1ae5aff 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 274 293 1.0E-69 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_1182 222e1b930f465b2c8bdde37fd1ae5aff 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 158 180 1.0E-69 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_1182 222e1b930f465b2c8bdde37fd1ae5aff 367 Gene3D G3DSA:2.40.160.10 28 367 7.1E-147 T 14-10-2018 IPR023614 Porin domain superfamily YP_1182 222e1b930f465b2c8bdde37fd1ae5aff 367 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 319 335 - T 14-10-2018 IPR013793 Porin, Gram-negative type, conserved site YP_0780 5266d98d75af36a7e330fb6357c75811 141 SUPERFAMILY SSF54637 8 135 3.37E-36 T 14-10-2018 IPR029069 HotDog domain superfamily YP_0780 5266d98d75af36a7e330fb6357c75811 141 PIRSF PIRSF003230 2 140 5.1E-21 T 14-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 YP_0780 5266d98d75af36a7e330fb6357c75811 141 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 13 124 2.3E-28 T 14-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 YP_0780 5266d98d75af36a7e330fb6357c75811 141 Pfam PF13279 Thioesterase-like superfamily 18 131 6.7E-16 T 14-10-2018 YP_0780 5266d98d75af36a7e330fb6357c75811 141 Gene3D G3DSA:3.10.129.10 2 139 9.6E-35 T 14-10-2018 YP_3374 20fcd76036fbbe3a42dfc359870c56ed 487 Pfam PF12146 Serine aminopeptidase, S33 118 237 1.7E-10 T 14-10-2018 IPR022742 Serine aminopeptidase, S33 YP_3374 20fcd76036fbbe3a42dfc359870c56ed 487 Gene3D G3DSA:3.40.50.1820 107 347 1.4E-29 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_3374 20fcd76036fbbe3a42dfc359870c56ed 487 SUPERFAMILY SSF53474 74 342 1.91E-25 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1602 bd632b8200acda4c757ba09fe1fdd0d7 386 Gene3D G3DSA:3.40.1690.10 217 359 6.6E-59 T 14-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal YP_1602 bd632b8200acda4c757ba09fe1fdd0d7 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 2.1E-41 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_1602 bd632b8200acda4c757ba09fe1fdd0d7 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 2.1E-41 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_1602 bd632b8200acda4c757ba09fe1fdd0d7 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 2.1E-41 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_1602 bd632b8200acda4c757ba09fe1fdd0d7 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 2.1E-41 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_1602 bd632b8200acda4c757ba09fe1fdd0d7 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 2.1E-41 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_1602 bd632b8200acda4c757ba09fe1fdd0d7 386 Pfam PF01312 FlhB HrpN YscU SpaS Family 7 347 1.6E-124 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_1602 bd632b8200acda4c757ba09fe1fdd0d7 386 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 353 9.2E-134 T 14-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 YP_1602 bd632b8200acda4c757ba09fe1fdd0d7 386 SUPERFAMILY SSF160544 244 351 1.11E-40 T 14-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal YP_3163 2ad053d548bc21e40f2462ee2dd47a82 96 Gene3D G3DSA:1.10.1200.20 2 96 3.4E-38 T 14-10-2018 IPR035900 Colicin E immunity protein superfamily YP_3163 2ad053d548bc21e40f2462ee2dd47a82 96 Pfam PF01320 Colicin immunity protein / pyocin immunity protein 15 95 2.2E-39 T 14-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 YP_3163 2ad053d548bc21e40f2462ee2dd47a82 96 ProDom PD007225 IMMUNITY COLICIN BACTERIOCIN PLASMID PROTEIN/PYOCIN ORFU3 ORFU1 PYOCIN 3D-STRUCTURE GENES 20 95 3.0E-40 T 14-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 YP_3163 2ad053d548bc21e40f2462ee2dd47a82 96 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 74 95 1.6E-24 T 14-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 YP_3163 2ad053d548bc21e40f2462ee2dd47a82 96 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 51 67 1.6E-24 T 14-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 YP_3163 2ad053d548bc21e40f2462ee2dd47a82 96 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 15 33 1.6E-24 T 14-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 YP_3163 2ad053d548bc21e40f2462ee2dd47a82 96 SUPERFAMILY SSF47345 12 96 3.79E-37 T 14-10-2018 IPR035900 Colicin E immunity protein superfamily YP_1006 e18c58be13c9af3f8e9ad583caf4b3dc 245 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 7 216 30.125 T 14-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 YP_1006 e18c58be13c9af3f8e9ad583caf4b3dc 245 Pfam PF13500 AAA domain 10 216 9.6E-36 T 14-10-2018 YP_1006 e18c58be13c9af3f8e9ad583caf4b3dc 245 Gene3D G3DSA:3.40.50.300 7 235 4.1E-70 T 14-10-2018 YP_1006 e18c58be13c9af3f8e9ad583caf4b3dc 245 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 11 181 4.4E-60 T 14-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 YP_1006 e18c58be13c9af3f8e9ad583caf4b3dc 245 SUPERFAMILY SSF52540 8 218 3.57E-64 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1006 e18c58be13c9af3f8e9ad583caf4b3dc 245 PIRSF PIRSF006755 6 235 1.3E-83 T 14-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 YP_1849 c8e3d229c6044526636bafa44e3e2539 363 Gene3D G3DSA:1.10.10.800 200 289 3.9E-85 T 14-10-2018 YP_1849 c8e3d229c6044526636bafa44e3e2539 363 SUPERFAMILY SSF53474 58 353 2.32E-41 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1849 c8e3d229c6044526636bafa44e3e2539 363 Gene3D G3DSA:3.40.50.1820 70 345 3.9E-85 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1849 c8e3d229c6044526636bafa44e3e2539 363 Pfam PF01738 Dienelactone hydrolase family 76 191 1.6E-5 T 14-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 YP_1433 d532031f84058f9d08bb2c86b1a3a2c1 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 1 241 35.218 T 14-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 YP_1433 d532031f84058f9d08bb2c86b1a3a2c1 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 2 238 3.9E-79 T 14-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 YP_1433 d532031f84058f9d08bb2c86b1a3a2c1 245 Pfam PF00977 Histidine biosynthesis protein 1 233 3.4E-77 T 14-10-2018 IPR006062 Histidine biosynthesis GO:0000105 YP_1433 d532031f84058f9d08bb2c86b1a3a2c1 245 Gene3D G3DSA:3.20.20.70 1 245 2.2E-94 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_1433 d532031f84058f9d08bb2c86b1a3a2c1 245 SUPERFAMILY SSF51366 1 242 1.14E-65 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 YP_1558 52695dc325caef3fc0145fcc007a8168 203 Gene3D G3DSA:1.10.1670.40 7 195 1.9E-65 T 14-10-2018 YP_1558 52695dc325caef3fc0145fcc007a8168 203 Gene3D G3DSA:1.10.340.30 35 146 1.9E-65 T 14-10-2018 YP_1558 52695dc325caef3fc0145fcc007a8168 203 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 44 181 1.0E-12 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 YP_1558 52695dc325caef3fc0145fcc007a8168 203 SUPERFAMILY SSF48150 35 198 1.64E-35 T 14-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 YP_1558 52695dc325caef3fc0145fcc007a8168 203 SMART SM00478 49 201 5.5E-4 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 YP_1893 631e762c89ddde1d18f436150e1dd117 267 SUPERFAMILY SSF53335 40 262 1.16E-40 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1893 631e762c89ddde1d18f436150e1dd117 267 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 24 262 1.1E-125 T 14-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 YP_1893 631e762c89ddde1d18f436150e1dd117 267 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 23 262 42.661 T 14-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 YP_1893 631e762c89ddde1d18f436150e1dd117 267 Gene3D G3DSA:3.40.50.150 38 267 1.5E-66 T 14-10-2018 YP_1893 631e762c89ddde1d18f436150e1dd117 267 PIRSF PIRSF006325 21 263 3.6E-134 T 14-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 YP_1893 631e762c89ddde1d18f436150e1dd117 267 Pfam PF13649 Methyltransferase domain 80 178 8.2E-14 T 14-10-2018 YP_pCD78 d81fefd8fe5a72be70798ab2fd0b7cc2 91 SUPERFAMILY SSF47598 15 58 1.89E-10 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 YP_pCD78 d81fefd8fe5a72be70798ab2fd0b7cc2 91 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 12 69 2.8E-17 T 14-10-2018 IPR022789 Antitoxin ParD YP_pCD78 d81fefd8fe5a72be70798ab2fd0b7cc2 91 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 16 83 6.8E-26 T 14-10-2018 IPR022789 Antitoxin ParD YP_pCD78 d81fefd8fe5a72be70798ab2fd0b7cc2 91 Gene3D G3DSA:1.10.8.1250 21 89 8.1E-15 T 14-10-2018 IPR038296 Antitoxin ParD superfamily YP_0273 58bb3b157f2de78720ef68a65a0c67d1 264 SUPERFAMILY SSF56276 43 173 9.02E-23 T 14-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 YP_0273 58bb3b157f2de78720ef68a65a0c67d1 264 TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme 3 261 2.1E-148 T 14-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 YP_0273 58bb3b157f2de78720ef68a65a0c67d1 264 Pfam PF02675 S-adenosylmethionine decarboxylase 33 169 4.4E-29 T 14-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 YP_0273 58bb3b157f2de78720ef68a65a0c67d1 264 Gene3D G3DSA:3.60.90.10 95 185 5.3E-6 T 14-10-2018 YP_0273 58bb3b157f2de78720ef68a65a0c67d1 264 PIRSF PIRSF001356 1 263 1.6E-157 T 14-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 YP_0273 58bb3b157f2de78720ef68a65a0c67d1 264 Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. 1 264 177.52 T 14-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 YP_2573 fdcb834926633bab143703f000861e38 916 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 693 711 1.2E-31 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2573 fdcb834926633bab143703f000861e38 916 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 648 666 1.2E-31 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2573 fdcb834926633bab143703f000861e38 916 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 722 740 1.2E-31 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2573 fdcb834926633bab143703f000861e38 916 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 755 769 1.2E-31 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_2573 fdcb834926633bab143703f000861e38 916 Gene3D G3DSA:1.10.1780.10 25 185 3.8E-39 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YP_2573 fdcb834926633bab143703f000861e38 916 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 258 389 6.2E-10 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_2573 fdcb834926633bab143703f000861e38 916 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 816 894 7.7E-15 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_2573 fdcb834926633bab143703f000861e38 916 Pfam PF07724 AAA domain (Cdc48 subfamily) 644 810 8.2E-38 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_2573 fdcb834926633bab143703f000861e38 916 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 678 696 - T 14-10-2018 IPR028299 ClpA/B, conserved site 2 YP_2573 fdcb834926633bab143703f000861e38 916 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 349 361 - T 14-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 YP_2573 fdcb834926633bab143703f000861e38 916 SMART SM00382 644 795 2.5E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2573 fdcb834926633bab143703f000861e38 916 SMART SM00382 253 394 2.2E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2573 fdcb834926633bab143703f000861e38 916 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 50 99 0.0031 T 14-10-2018 IPR004176 Clp, N-terminal YP_2573 fdcb834926633bab143703f000861e38 916 Gene3D G3DSA:3.40.50.300 403 591 4.7E-47 T 14-10-2018 YP_2573 fdcb834926633bab143703f000861e38 916 SUPERFAMILY SSF81923 40 148 1.96E-17 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YP_2573 fdcb834926633bab143703f000861e38 916 SUPERFAMILY SSF52540 215 560 4.85E-73 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2573 fdcb834926633bab143703f000861e38 916 SUPERFAMILY SSF52540 593 885 3.3E-64 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2573 fdcb834926633bab143703f000861e38 916 Gene3D G3DSA:3.40.50.300 214 402 5.1E-61 T 14-10-2018 YP_2573 fdcb834926633bab143703f000861e38 916 SMART SM01086 816 907 2.0E-14 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_2573 fdcb834926633bab143703f000861e38 916 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 37 888 0.0 T 14-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 YP_2573 fdcb834926633bab143703f000861e38 916 Gene3D G3DSA:3.40.50.300 597 814 1.8E-63 T 14-10-2018 YP_2573 fdcb834926633bab143703f000861e38 916 Gene3D G3DSA:1.10.8.60 816 913 1.3E-13 T 14-10-2018 YP_1160 e0838f49753485e8bc90c624a68c2a70 793 Gene3D G3DSA:2.60.40.10 602 717 3.8E-35 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_1160 e0838f49753485e8bc90c624a68c2a70 793 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 70 328 5.9E-52 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YP_1160 e0838f49753485e8bc90c624a68c2a70 793 Gene3D G3DSA:3.20.20.300 29 337 4.7E-110 T 14-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 YP_1160 e0838f49753485e8bc90c624a68c2a70 793 Pfam PF14310 Fibronectin type III-like domain 632 702 9.2E-27 T 14-10-2018 IPR026891 Fibronectin type III-like domain YP_1160 e0838f49753485e8bc90c624a68c2a70 793 PRINTS PR00133 Glycosyl hydrolase family 3 signature 70 86 2.6E-34 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YP_1160 e0838f49753485e8bc90c624a68c2a70 793 PRINTS PR00133 Glycosyl hydrolase family 3 signature 102 121 2.6E-34 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YP_1160 e0838f49753485e8bc90c624a68c2a70 793 PRINTS PR00133 Glycosyl hydrolase family 3 signature 179 195 2.6E-34 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YP_1160 e0838f49753485e8bc90c624a68c2a70 793 PRINTS PR00133 Glycosyl hydrolase family 3 signature 249 267 2.6E-34 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YP_1160 e0838f49753485e8bc90c624a68c2a70 793 PRINTS PR00133 Glycosyl hydrolase family 3 signature 148 164 2.6E-34 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YP_1160 e0838f49753485e8bc90c624a68c2a70 793 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 361 593 1.3E-50 T 14-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 YP_1160 e0838f49753485e8bc90c624a68c2a70 793 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 249 266 - T 14-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 YP_1160 e0838f49753485e8bc90c624a68c2a70 793 SUPERFAMILY SSF51445 19 360 2.0E-88 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_1160 e0838f49753485e8bc90c624a68c2a70 793 SUPERFAMILY SSF52279 361 595 4.18E-48 T 14-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 YP_1160 e0838f49753485e8bc90c624a68c2a70 793 Gene3D G3DSA:3.40.50.1700 347 595 1.1E-80 T 14-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 YP_1160 e0838f49753485e8bc90c624a68c2a70 793 SMART SM01217 632 702 5.1E-34 T 14-10-2018 IPR026891 Fibronectin type III-like domain YP_1190 178e753a18dad2312dfb19151d7fe966 440 Gene3D G3DSA:1.10.225.40 353 440 2.2E-41 T 14-10-2018 IPR038198 MukF, C-terminal domain superfamily YP_1190 178e753a18dad2312dfb19151d7fe966 440 Hamap MF_01803 Chromosome partition protein MukF [mukF]. 1 440 55.174 T 14-10-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 YP_1190 178e753a18dad2312dfb19151d7fe966 440 SUPERFAMILY SSF140570 119 281 1.96E-76 T 14-10-2018 IPR036141 MukF, middle domain superfamily YP_1190 178e753a18dad2312dfb19151d7fe966 440 Pfam PF17192 MukF middle domain 121 281 5.1E-85 T 14-10-2018 IPR033440 Chromosome partition protein MukF, middle domain YP_1190 178e753a18dad2312dfb19151d7fe966 440 Gene3D G3DSA:1.20.58.590 119 311 1.6E-87 T 14-10-2018 IPR036141 MukF, middle domain superfamily YP_1190 178e753a18dad2312dfb19151d7fe966 440 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 75 - T 14-10-2018 IPR010916 TonB box, conserved site YP_1190 178e753a18dad2312dfb19151d7fe966 440 Gene3D G3DSA:1.10.10.10 24 118 1.0E-52 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1190 178e753a18dad2312dfb19151d7fe966 440 Pfam PF17193 MukF C-terminal domain 283 440 1.3E-78 T 14-10-2018 IPR033441 Chromosome partition protein MukF, C-terminal domain YP_1190 178e753a18dad2312dfb19151d7fe966 440 SUPERFAMILY SSF46785 8 118 5.17E-50 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1190 178e753a18dad2312dfb19151d7fe966 440 PIRSF PIRSF018282 1 440 4.5E-247 T 14-10-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 YP_1190 178e753a18dad2312dfb19151d7fe966 440 Pfam PF03882 MukF winged-helix domain 3 117 3.2E-58 T 14-10-2018 IPR033439 Chromosome partition protein MukF, winged-helix domain YP_1393 57dd792e5bc8ee621ee547d9e390c05a 289 Pfam PF03466 LysR substrate binding domain 85 285 8.4E-39 T 14-10-2018 IPR005119 LysR, substrate-binding YP_1393 57dd792e5bc8ee621ee547d9e390c05a 289 Gene3D G3DSA:1.10.10.10 1 87 1.5E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1393 57dd792e5bc8ee621ee547d9e390c05a 289 SUPERFAMILY SSF53850 85 286 4.07E-37 T 14-10-2018 YP_1393 57dd792e5bc8ee621ee547d9e390c05a 289 Gene3D G3DSA:3.40.190.290 89 288 2.3E-33 T 14-10-2018 YP_1393 57dd792e5bc8ee621ee547d9e390c05a 289 SUPERFAMILY SSF46785 1 109 1.52E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1393 57dd792e5bc8ee621ee547d9e390c05a 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.2E-16 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_0519 7eff6aec5550c84374a5e47480725be8 293 Pfam PF02666 Phosphatidylserine decarboxylase 63 284 8.9E-60 T 14-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 YP_0519 7eff6aec5550c84374a5e47480725be8 293 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 49 284 1.7E-93 T 14-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 YP_0519 7eff6aec5550c84374a5e47480725be8 293 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 10 287 48.699 T 14-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 YP_2512 818a2ea06329b5784b6f5ce21c74943c 441 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YP_2512 818a2ea06329b5784b6f5ce21c74943c 441 SUPERFAMILY SSF52540 76 359 1.17E-65 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2512 818a2ea06329b5784b6f5ce21c74943c 441 Gene3D G3DSA:3.40.50.300 1 212 5.1E-71 T 14-10-2018 YP_2512 818a2ea06329b5784b6f5ce21c74943c 441 Pfam PF00271 Helicase conserved C-terminal domain 235 343 1.1E-26 T 14-10-2018 IPR001650 Helicase, C-terminal YP_2512 818a2ea06329b5784b6f5ce21c74943c 441 Pfam PF00270 DEAD/DEAH box helicase 28 196 1.5E-46 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YP_2512 818a2ea06329b5784b6f5ce21c74943c 441 SMART SM00490 262 343 9.9E-27 T 14-10-2018 IPR001650 Helicase, C-terminal YP_2512 818a2ea06329b5784b6f5ce21c74943c 441 Hamap MF_00967 ATP-dependent RNA helicase SrmB [srmB]. 4 427 49.417 T 14-10-2018 IPR028621 ATP-dependent RNA helicase SrmB GO:0000027|GO:0004004 YP_2512 818a2ea06329b5784b6f5ce21c74943c 441 SMART SM00487 23 225 5.6E-58 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_2512 818a2ea06329b5784b6f5ce21c74943c 441 Gene3D G3DSA:3.40.50.300 219 388 3.1E-48 T 14-10-2018 YP_4026 9f741f9794f128bf236a85199e3145b5 458 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 8 457 8.6E-205 T 14-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 YP_4026 9f741f9794f128bf236a85199e3145b5 458 SUPERFAMILY SSF51161 257 440 1.66E-51 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily YP_4026 9f741f9794f128bf236a85199e3145b5 458 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 269 301 2.4E-4 T 14-10-2018 IPR001451 Hexapeptide repeat YP_4026 9f741f9794f128bf236a85199e3145b5 458 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 324 354 3.1E-4 T 14-10-2018 IPR001451 Hexapeptide repeat YP_4026 9f741f9794f128bf236a85199e3145b5 458 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 397 431 6.3E-7 T 14-10-2018 IPR001451 Hexapeptide repeat YP_4026 9f741f9794f128bf236a85199e3145b5 458 SUPERFAMILY SSF53448 7 254 5.42E-68 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_4026 9f741f9794f128bf236a85199e3145b5 458 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 405 433 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YP_4026 9f741f9794f128bf236a85199e3145b5 458 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 7 454 43.326 T 14-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 YP_4026 9f741f9794f128bf236a85199e3145b5 458 Pfam PF12804 MobA-like NTP transferase domain 10 124 1.2E-22 T 14-10-2018 IPR025877 MobA-like NTP transferase YP_4026 9f741f9794f128bf236a85199e3145b5 458 Gene3D G3DSA:2.160.10.10 230 458 2.6E-72 T 14-10-2018 YP_4026 9f741f9794f128bf236a85199e3145b5 458 Gene3D G3DSA:3.90.550.10 2 229 8.2E-75 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_4010 4a73ff6d1018161dacd00ecd424a1e8b 454 Gene3D G3DSA:3.40.50.300 217 382 7.9E-104 T 14-10-2018 YP_4010 4a73ff6d1018161dacd00ecd424a1e8b 454 SUPERFAMILY SSF52540 72 372 2.52E-45 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_4010 4a73ff6d1018161dacd00ecd424a1e8b 454 Gene3D G3DSA:3.30.1360.120 1 121 6.3E-38 T 14-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 YP_4010 4a73ff6d1018161dacd00ecd424a1e8b 454 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 120 6.3E-34 T 14-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 YP_4010 4a73ff6d1018161dacd00ecd424a1e8b 454 Pfam PF01926 50S ribosome-binding GTPase 218 308 2.0E-24 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_4010 4a73ff6d1018161dacd00ecd424a1e8b 454 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 454 3.0E-100 T 14-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 YP_4010 4a73ff6d1018161dacd00ecd424a1e8b 454 SUPERFAMILY SSF116878 121 454 2.35E-51 T 14-10-2018 YP_4010 4a73ff6d1018161dacd00ecd424a1e8b 454 Pfam PF12631 MnmE helical domain 123 451 2.0E-60 T 14-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 YP_4010 4a73ff6d1018161dacd00ecd424a1e8b 454 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 454 33.196 T 14-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 YP_4010 4a73ff6d1018161dacd00ecd424a1e8b 454 Gene3D G3DSA:1.20.120.430 122 454 7.9E-104 T 14-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 YP_4010 4a73ff6d1018161dacd00ecd424a1e8b 454 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 216 370 7.8E-23 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YP_0933 714d46f05f8dc4e3d6c10fd2dd3724f6 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 242 259 8.0E-65 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_0933 714d46f05f8dc4e3d6c10fd2dd3724f6 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 8.0E-65 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_0933 714d46f05f8dc4e3d6c10fd2dd3724f6 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 96 118 8.0E-65 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_0933 714d46f05f8dc4e3d6c10fd2dd3724f6 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 8.0E-65 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_0933 714d46f05f8dc4e3d6c10fd2dd3724f6 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 151 173 8.0E-65 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_0933 714d46f05f8dc4e3d6c10fd2dd3724f6 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 282 301 8.0E-65 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_0933 714d46f05f8dc4e3d6c10fd2dd3724f6 371 SUPERFAMILY SSF56935 22 371 7.85E-80 T 14-10-2018 YP_0933 714d46f05f8dc4e3d6c10fd2dd3724f6 371 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 326 342 - T 14-10-2018 IPR013793 Porin, Gram-negative type, conserved site YP_0933 714d46f05f8dc4e3d6c10fd2dd3724f6 371 Gene3D G3DSA:2.40.160.10 22 371 2.7E-149 T 14-10-2018 IPR023614 Porin domain superfamily YP_0933 714d46f05f8dc4e3d6c10fd2dd3724f6 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 326 343 4.9E-18 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_0933 714d46f05f8dc4e3d6c10fd2dd3724f6 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 96 106 4.9E-18 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_0933 714d46f05f8dc4e3d6c10fd2dd3724f6 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 153 164 4.9E-18 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_0933 714d46f05f8dc4e3d6c10fd2dd3724f6 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 236 248 4.9E-18 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_0933 714d46f05f8dc4e3d6c10fd2dd3724f6 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 4.9E-18 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_0933 714d46f05f8dc4e3d6c10fd2dd3724f6 371 Pfam PF00267 Gram-negative porin 27 371 4.2E-144 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_3673 6f4e77b232bfb254599886b7d60fad44 867 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 21 855 0.0 T 14-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 YP_3673 6f4e77b232bfb254599886b7d60fad44 867 SMART SM00382 601 758 2.9E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3673 6f4e77b232bfb254599886b7d60fad44 867 SMART SM00382 226 371 5.5E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3673 6f4e77b232bfb254599886b7d60fad44 867 Gene3D G3DSA:3.40.50.300 554 769 5.6E-62 T 14-10-2018 YP_3673 6f4e77b232bfb254599886b7d60fad44 867 SMART SM01086 772 864 0.0094 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_3673 6f4e77b232bfb254599886b7d60fad44 867 Gene3D G3DSA:3.40.50.300 372 548 2.9E-36 T 14-10-2018 YP_3673 6f4e77b232bfb254599886b7d60fad44 867 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 28 78 2.8E-7 T 14-10-2018 IPR004176 Clp, N-terminal YP_3673 6f4e77b232bfb254599886b7d60fad44 867 Pfam PF07724 AAA domain (Cdc48 subfamily) 600 767 6.1E-31 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_3673 6f4e77b232bfb254599886b7d60fad44 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 650 668 9.9E-23 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3673 6f4e77b232bfb254599886b7d60fad44 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 605 623 9.9E-23 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3673 6f4e77b232bfb254599886b7d60fad44 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 679 697 9.9E-23 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3673 6f4e77b232bfb254599886b7d60fad44 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 712 726 9.9E-23 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_3673 6f4e77b232bfb254599886b7d60fad44 867 Gene3D G3DSA:3.40.50.300 175 370 7.1E-62 T 14-10-2018 YP_3673 6f4e77b232bfb254599886b7d60fad44 867 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 231 364 5.1E-11 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_3673 6f4e77b232bfb254599886b7d60fad44 867 SUPERFAMILY SSF81923 18 134 9.81E-18 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YP_3673 6f4e77b232bfb254599886b7d60fad44 867 SUPERFAMILY SSF52540 189 504 4.5E-69 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3673 6f4e77b232bfb254599886b7d60fad44 867 Gene3D G3DSA:1.10.1780.10 4 164 1.4E-31 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YP_3673 6f4e77b232bfb254599886b7d60fad44 867 SUPERFAMILY SSF52540 550 843 1.5E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2128 c5126cdc45a4694a0df6d99c2af0354b 324 Gene3D G3DSA:3.20.20.120 116 321 2.2E-57 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YP_2128 c5126cdc45a4694a0df6d99c2af0354b 324 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 2 109 4.6E-13 T 14-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YP_2128 c5126cdc45a4694a0df6d99c2af0354b 324 Gene3D G3DSA:3.30.390.10 1 103 1.5E-26 T 14-10-2018 IPR029017 Enolase-like, N-terminal YP_2128 c5126cdc45a4694a0df6d99c2af0354b 324 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 173 204 - T 14-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 YP_2128 c5126cdc45a4694a0df6d99c2af0354b 324 Pfam PF13378 Enolase C-terminal domain-like 136 320 2.7E-23 T 14-10-2018 IPR029065 Enolase C-terminal domain-like YP_2128 c5126cdc45a4694a0df6d99c2af0354b 324 SUPERFAMILY SSF54826 3 109 5.5E-27 T 14-10-2018 YP_2128 c5126cdc45a4694a0df6d99c2af0354b 324 SUPERFAMILY SSF51604 118 319 4.19E-52 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YP_2128 c5126cdc45a4694a0df6d99c2af0354b 324 SMART SM00922 130 223 6.4E-17 T 14-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_1293 02c1d9f8b0894d3f1fe0f3d4a008d985 312 Gene3D G3DSA:3.40.1190.20 2 310 2.7E-90 T 14-10-2018 IPR029056 Ribokinase-like YP_1293 02c1d9f8b0894d3f1fe0f3d4a008d985 312 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 249 262 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 YP_1293 02c1d9f8b0894d3f1fe0f3d4a008d985 312 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 39 63 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 YP_1293 02c1d9f8b0894d3f1fe0f3d4a008d985 312 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 5 308 9.3E-100 T 14-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 YP_1293 02c1d9f8b0894d3f1fe0f3d4a008d985 312 SUPERFAMILY SSF53613 7 306 8.89E-66 T 14-10-2018 IPR029056 Ribokinase-like YP_1293 02c1d9f8b0894d3f1fe0f3d4a008d985 312 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 5 308 5.8E-98 T 14-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 YP_1293 02c1d9f8b0894d3f1fe0f3d4a008d985 312 PIRSF PIRSF000535 2 311 3.0E-114 T 14-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 YP_1293 02c1d9f8b0894d3f1fe0f3d4a008d985 312 Pfam PF00294 pfkB family carbohydrate kinase 14 293 4.0E-62 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB YP_3997 aa0857ecdf20561455bc8c78b6d9ce3b 329 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 26 314 4.8E-84 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YP_3997 aa0857ecdf20561455bc8c78b6d9ce3b 329 SUPERFAMILY SSF53686 15 317 2.23E-91 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_3997 aa0857ecdf20561455bc8c78b6d9ce3b 329 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 52 65 - T 14-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 YP_3997 aa0857ecdf20561455bc8c78b6d9ce3b 329 Gene3D G3DSA:3.40.50.1100 17 317 4.2E-108 T 14-10-2018 YP_3997 aa0857ecdf20561455bc8c78b6d9ce3b 329 Gene3D G3DSA:3.40.50.1100 60 156 4.2E-108 T 14-10-2018 YP_3483 39abffb9ce8d90e6b3a233e6ae2ca113 499 Pfam PF00005 ABC transporter 269 424 6.2E-19 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3483 39abffb9ce8d90e6b3a233e6ae2ca113 499 SUPERFAMILY SSF52540 4 230 5.44E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3483 39abffb9ce8d90e6b3a233e6ae2ca113 499 SUPERFAMILY SSF52540 255 486 7.46E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3483 39abffb9ce8d90e6b3a233e6ae2ca113 499 SMART SM00382 30 218 9.0E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3483 39abffb9ce8d90e6b3a233e6ae2ca113 499 SMART SM00382 278 473 0.01 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3483 39abffb9ce8d90e6b3a233e6ae2ca113 499 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3483 39abffb9ce8d90e6b3a233e6ae2ca113 499 Gene3D G3DSA:3.40.50.300 2 249 7.4E-54 T 14-10-2018 YP_3483 39abffb9ce8d90e6b3a233e6ae2ca113 499 Gene3D G3DSA:3.40.50.300 250 496 2.8E-44 T 14-10-2018 YP_3483 39abffb9ce8d90e6b3a233e6ae2ca113 499 Pfam PF00005 ABC transporter 21 170 2.2E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1770 5de091998967c2c12b1c63b0fa04fdb5 208 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 35 206 6.8E-58 T 14-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 YP_1770 5de091998967c2c12b1c63b0fa04fdb5 208 Pfam PF00849 RNA pseudouridylate synthase 60 176 5.3E-12 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_1770 5de091998967c2c12b1c63b0fa04fdb5 208 Gene3D G3DSA:3.30.70.580 19 94 1.9E-27 T 14-10-2018 YP_1770 5de091998967c2c12b1c63b0fa04fdb5 208 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 66 80 - T 14-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 YP_1770 5de091998967c2c12b1c63b0fa04fdb5 208 SUPERFAMILY SSF55120 29 206 1.6E-41 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_1770 5de091998967c2c12b1c63b0fa04fdb5 208 Gene3D G3DSA:3.30.70.1560 95 195 3.8E-41 T 14-10-2018 YP_1590 5e97ff29b8a66f96574776c1d5d1ad3f 209 SUPERFAMILY SSF117143 77 189 9.81E-16 T 14-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YP_1590 5e97ff29b8a66f96574776c1d5d1ad3f 209 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 120 4.2E-34 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YP_1590 5e97ff29b8a66f96574776c1d5d1ad3f 209 Pfam PF00460 Flagella basal body rod protein 5 35 3.9E-8 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 Gene3D G3DSA:3.30.1570.10 1 136 6.7E-73 T 14-10-2018 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 PRINTS PR00700 Protein tyrosine phosphatase signature 398 416 2.4E-12 T 14-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 PRINTS PR00700 Protein tyrosine phosphatase signature 444 454 2.4E-12 T 14-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 PRINTS PR00700 Protein tyrosine phosphatase signature 344 361 2.4E-12 T 14-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 PRINTS PR00700 Protein tyrosine phosphatase signature 242 249 2.4E-12 T 14-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 PRINTS PR00700 Protein tyrosine phosphatase signature 256 276 2.4E-12 T 14-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 PRINTS PR00700 Protein tyrosine phosphatase signature 427 442 2.4E-12 T 14-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 SMART SM00194 193 463 9.1E-47 T 14-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 252 265 2.8E-42 T 14-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 399 410 2.8E-42 T 14-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 104 122 2.8E-42 T 14-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 299 315 2.8E-42 T 14-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 342 356 2.8E-42 T 14-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 Pfam PF09013 YopH, N-terminal 3 123 4.3E-80 T 14-10-2018 IPR015103 Protein-tyrosine phosphatase, YopH, N-terminal GO:0004725|GO:0006470|GO:0009405 YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 Gene3D G3DSA:3.90.190.10 187 468 2.1E-68 T 14-10-2018 IPR029021 Protein-tyrosine phosphatase-like YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 SMART SM00404 345 459 2.8E-17 T 14-10-2018 IPR003595 Protein-tyrosine phosphatase, catalytic YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 SUPERFAMILY SSF64449 3 125 8.76E-56 T 14-10-2018 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 401 411 - T 14-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 SUPERFAMILY SSF52799 194 457 7.48E-48 T 14-10-2018 IPR029021 Protein-tyrosine phosphatase-like YP_pCD17 904dac5ea388f73e7bc12e5a9eea8c38 468 Pfam PF00102 Protein-tyrosine phosphatase 226 456 2.0E-25 T 14-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 YP_0813 0a90f638fda54c7d012b020fc46c6548 320 Gene3D G3DSA:3.40.50.1400 7 319 2.7E-90 T 14-10-2018 YP_0813 0a90f638fda54c7d012b020fc46c6548 320 Pfam PF00762 Ferrochelatase 6 318 2.8E-107 T 14-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 YP_0813 0a90f638fda54c7d012b020fc46c6548 320 SUPERFAMILY SSF53800 3 318 1.44E-99 T 14-10-2018 YP_0813 0a90f638fda54c7d012b020fc46c6548 320 TIGRFAM TIGR00109 hemH: ferrochelatase 3 318 1.1E-105 T 14-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 YP_0813 0a90f638fda54c7d012b020fc46c6548 320 Hamap MF_00323 Ferrochelatase [hemH]. 4 320 37.298 T 14-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 YP_0813 0a90f638fda54c7d012b020fc46c6548 320 ProSitePatterns PS00534 Ferrochelatase signature. 189 207 - T 14-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 YP_0813 0a90f638fda54c7d012b020fc46c6548 320 Gene3D G3DSA:3.40.50.1400 163 301 2.7E-90 T 14-10-2018 YP_1268 02c981d94be7babfc80a4e724370469d 201 SUPERFAMILY SSF48317 1 199 5.23E-39 T 14-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YP_1268 02c981d94be7babfc80a4e724370469d 201 SMART SM00014 59 168 6.9E-19 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YP_1268 02c981d94be7babfc80a4e724370469d 201 Gene3D G3DSA:1.20.144.10 93 189 1.1E-15 T 14-10-2018 YP_1268 02c981d94be7babfc80a4e724370469d 201 Pfam PF01569 PAP2 superfamily 65 168 1.0E-11 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YP_3823 99490c20f6425c823a3cb73432c6b12c 362 Pfam PF13180 PDZ domain 273 346 2.2E-12 T 14-10-2018 IPR001478 PDZ domain GO:0005515 YP_3823 99490c20f6425c823a3cb73432c6b12c 362 Gene3D G3DSA:2.30.42.10 256 358 1.2E-21 T 14-10-2018 YP_3823 99490c20f6425c823a3cb73432c6b12c 362 Gene3D G3DSA:2.40.10.10 141 255 4.8E-39 T 14-10-2018 YP_3823 99490c20f6425c823a3cb73432c6b12c 362 Gene3D G3DSA:2.40.10.10 32 140 8.7E-29 T 14-10-2018 YP_3823 99490c20f6425c823a3cb73432c6b12c 362 SUPERFAMILY SSF50494 45 253 4.76E-59 T 14-10-2018 IPR009003 Peptidase S1, PA clan YP_3823 99490c20f6425c823a3cb73432c6b12c 362 SUPERFAMILY SSF50156 229 350 4.21E-21 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 YP_3823 99490c20f6425c823a3cb73432c6b12c 362 Pfam PF13365 Trypsin-like peptidase domain 80 214 5.1E-27 T 14-10-2018 YP_3823 99490c20f6425c823a3cb73432c6b12c 362 TIGRFAM TIGR02038 protease_degS: periplasmic serine peptidase DegS 2 349 1.0E-157 T 14-10-2018 IPR011783 Peptidase S1C, DegS GO:0004252|GO:0006508 YP_3823 99490c20f6425c823a3cb73432c6b12c 362 SMART SM00228 256 338 1.0E-12 T 14-10-2018 IPR001478 PDZ domain GO:0005515 YP_3823 99490c20f6425c823a3cb73432c6b12c 362 PRINTS PR00834 HtrA/DegQ protease family signature 207 224 9.0E-47 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_3823 99490c20f6425c823a3cb73432c6b12c 362 PRINTS PR00834 HtrA/DegQ protease family signature 150 174 9.0E-47 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_3823 99490c20f6425c823a3cb73432c6b12c 362 PRINTS PR00834 HtrA/DegQ protease family signature 296 308 9.0E-47 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_3823 99490c20f6425c823a3cb73432c6b12c 362 PRINTS PR00834 HtrA/DegQ protease family signature 89 101 9.0E-47 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_3823 99490c20f6425c823a3cb73432c6b12c 362 PRINTS PR00834 HtrA/DegQ protease family signature 185 202 9.0E-47 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_3823 99490c20f6425c823a3cb73432c6b12c 362 PRINTS PR00834 HtrA/DegQ protease family signature 110 130 9.0E-47 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_3468 34b92bcd2ac7d210acc5086ea9987994 782 SUPERFAMILY SSF69279 20 203 1.98E-47 T 14-10-2018 YP_3468 34b92bcd2ac7d210acc5086ea9987994 782 SUPERFAMILY SSF69255 382 472 3.14E-25 T 14-10-2018 YP_3468 34b92bcd2ac7d210acc5086ea9987994 782 Gene3D G3DSA:4.10.180.10 297 312 3.8E-24 T 14-10-2018 YP_3468 34b92bcd2ac7d210acc5086ea9987994 782 Gene3D G3DSA:2.40.50.230 388 471 5.7E-34 T 14-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YP_3468 34b92bcd2ac7d210acc5086ea9987994 782 Gene3D G3DSA:2.30.110.50 294 370 3.8E-24 T 14-10-2018 YP_3468 34b92bcd2ac7d210acc5086ea9987994 782 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 490 592 1.8E-35 T 14-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain YP_3468 34b92bcd2ac7d210acc5086ea9987994 782 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 611 751 1.1E-51 T 14-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal YP_3468 34b92bcd2ac7d210acc5086ea9987994 782 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 26 516 2.3E-186 T 14-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YP_3468 34b92bcd2ac7d210acc5086ea9987994 782 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 20 515 3.4E-74 T 14-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YP_3468 34b92bcd2ac7d210acc5086ea9987994 782 Pfam PF05954 Phage late control gene D protein (GPD) 34 355 1.1E-63 T 14-10-2018 YP_3468 34b92bcd2ac7d210acc5086ea9987994 782 Gene3D G3DSA:3.55.50.10 112 208 3.9E-80 T 14-10-2018 YP_3468 34b92bcd2ac7d210acc5086ea9987994 782 Gene3D G3DSA:2.30.110.50 15 238 3.9E-80 T 14-10-2018 YP_3468 34b92bcd2ac7d210acc5086ea9987994 782 SUPERFAMILY SSF69279 204 383 2.38E-50 T 14-10-2018 YP_0702 dec98ef080e7317211c8d3215d14563b 356 Gene3D G3DSA:3.30.70.270 8 168 1.2E-64 T 14-10-2018 YP_0702 dec98ef080e7317211c8d3215d14563b 356 Gene3D G3DSA:3.30.1490.100 241 355 2.3E-29 T 14-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 YP_0702 dec98ef080e7317211c8d3215d14563b 356 Pfam PF00817 impB/mucB/samB family 11 158 2.6E-48 T 14-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 YP_0702 dec98ef080e7317211c8d3215d14563b 356 SUPERFAMILY SSF56672 3 238 5.6E-93 T 14-10-2018 YP_0702 dec98ef080e7317211c8d3215d14563b 356 Gene3D G3DSA:2.30.40.20 25 77 1.2E-64 T 14-10-2018 YP_0702 dec98ef080e7317211c8d3215d14563b 356 Pfam PF11798 IMS family HHH motif 173 201 5.8E-8 T 14-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 YP_0702 dec98ef080e7317211c8d3215d14563b 356 SUPERFAMILY SSF100879 245 354 1.38E-26 T 14-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 YP_0702 dec98ef080e7317211c8d3215d14563b 356 Hamap MF_01113 DNA polymerase IV [dinB]. 5 353 37.433 T 14-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 YP_0702 dec98ef080e7317211c8d3215d14563b 356 Gene3D G3DSA:1.10.150.20 170 232 1.6E-19 T 14-10-2018 YP_0702 dec98ef080e7317211c8d3215d14563b 356 Pfam PF11799 impB/mucB/samB family C-terminal domain 239 345 1.1E-8 T 14-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 YP_2827 49e72f3785a9a52e81b3ce400e88f315 422 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 196 410 1.6E-52 T 14-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 YP_2827 49e72f3785a9a52e81b3ce400e88f315 422 Pfam PF11741 AMIN domain 45 148 2.2E-27 T 14-10-2018 IPR021731 AMIN domain YP_2827 49e72f3785a9a52e81b3ce400e88f315 422 SUPERFAMILY SSF53187 194 413 9.1E-55 T 14-10-2018 YP_2827 49e72f3785a9a52e81b3ce400e88f315 422 Gene3D G3DSA:3.40.630.40 181 421 3.9E-90 T 14-10-2018 YP_2827 49e72f3785a9a52e81b3ce400e88f315 422 SMART SM00646 256 410 8.0E-65 T 14-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 YP_2827 49e72f3785a9a52e81b3ce400e88f315 422 Gene3D G3DSA:2.60.40.3500 31 151 6.9E-34 T 14-10-2018 YP_3358 36386217cef3b2c085f2ae8fe3df33c5 234 SUPERFAMILY SSF56935 53 234 3.66E-10 T 14-10-2018 YP_3358 36386217cef3b2c085f2ae8fe3df33c5 234 Gene3D G3DSA:2.40.160.40 21 234 2.2E-75 T 14-10-2018 YP_3358 36386217cef3b2c085f2ae8fe3df33c5 234 Pfam PF06178 Oligogalacturonate-specific porin protein (KdgM) 14 234 8.1E-79 T 14-10-2018 IPR009331 Oligogalacturonate-specific porin YP_1203 44de891b25bead524d19acff99cc30f2 428 PIRSF PIRSF000505 2 428 2.1E-153 T 14-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 YP_1203 44de891b25bead524d19acff99cc30f2 428 ProSitePatterns PS00104 EPSP synthase signature 1. 91 105 - T 14-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 YP_1203 44de891b25bead524d19acff99cc30f2 428 SUPERFAMILY SSF55205 4 424 7.29E-145 T 14-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 YP_1203 44de891b25bead524d19acff99cc30f2 428 ProSitePatterns PS00885 EPSP synthase signature 2. 339 357 - T 14-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 YP_1203 44de891b25bead524d19acff99cc30f2 428 Gene3D G3DSA:3.65.10.10 21 224 4.2E-157 T 14-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 YP_1203 44de891b25bead524d19acff99cc30f2 428 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 11 427 35.436 T 14-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 YP_1203 44de891b25bead524d19acff99cc30f2 428 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 420 1.5E-152 T 14-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 YP_1203 44de891b25bead524d19acff99cc30f2 428 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 15 424 1.9E-141 T 14-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 YP_1203 44de891b25bead524d19acff99cc30f2 428 Gene3D G3DSA:3.65.10.10 242 420 4.2E-157 T 14-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 YP_2111 0226f01764f920d2bea4a723edb56a37 318 Gene3D G3DSA:1.10.10.10 2 53 3.8E-14 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2111 0226f01764f920d2bea4a723edb56a37 318 Gene3D G3DSA:3.40.50.1360 54 313 7.1E-66 T 14-10-2018 YP_2111 0226f01764f920d2bea4a723edb56a37 318 Pfam PF04198 Putative sugar-binding domain 58 314 4.1E-69 T 14-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 YP_2111 0226f01764f920d2bea4a723edb56a37 318 SUPERFAMILY SSF100950 58 314 2.47E-64 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_2973 e508b5f5a872c6c13e818d4ac67eda8a 217 SUPERFAMILY SSF55821 7 210 1.01E-84 T 14-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YP_2973 e508b5f5a872c6c13e818d4ac67eda8a 217 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 17 208 2.5E-82 T 14-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YP_2973 e508b5f5a872c6c13e818d4ac67eda8a 217 Gene3D G3DSA:3.90.870.10 1 217 1.3E-96 T 14-10-2018 YP_2973 e508b5f5a872c6c13e818d4ac67eda8a 217 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 11 213 41.897 T 14-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YP_2973 e508b5f5a872c6c13e818d4ac67eda8a 217 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 13 208 1.8E-79 T 14-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YP_0905 c8e4e651c7ee0b9da7be53f8f9030ad1 209 SMART SM01007 37 205 1.4E-48 T 14-10-2018 IPR001303 Class II aldolase/adducin N-terminal YP_0905 c8e4e651c7ee0b9da7be53f8f9030ad1 209 SUPERFAMILY SSF53639 31 199 4.12E-55 T 14-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YP_0905 c8e4e651c7ee0b9da7be53f8f9030ad1 209 Gene3D G3DSA:3.40.225.10 30 201 7.0E-52 T 14-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YP_0905 c8e4e651c7ee0b9da7be53f8f9030ad1 209 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 38 200 2.7E-43 T 14-10-2018 IPR001303 Class II aldolase/adducin N-terminal YP_0315 c1acc266289fedb1c7214df97c9ca213 576 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 80 139 3.0E-13 T 14-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0315 c1acc266289fedb1c7214df97c9ca213 576 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 353 417 7.9E-15 T 14-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0315 c1acc266289fedb1c7214df97c9ca213 576 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 10 571 58.288 T 14-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0315 c1acc266289fedb1c7214df97c9ca213 576 SUPERFAMILY SSF56014 150 344 3.66E-58 T 14-10-2018 YP_0315 c1acc266289fedb1c7214df97c9ca213 576 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 19 559 2.8E-289 T 14-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0315 c1acc266289fedb1c7214df97c9ca213 576 PRINTS PR00397 Sirohaem Fe-binding site signature 478 496 2.7E-8 T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0315 c1acc266289fedb1c7214df97c9ca213 576 PRINTS PR00397 Sirohaem Fe-binding site signature 430 448 2.7E-8 T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0315 c1acc266289fedb1c7214df97c9ca213 576 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 478 494 - T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0315 c1acc266289fedb1c7214df97c9ca213 576 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 430 558 0.0055 T 14-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0315 c1acc266289fedb1c7214df97c9ca213 576 SUPERFAMILY SSF56014 429 561 1.57E-34 T 14-10-2018 YP_0315 c1acc266289fedb1c7214df97c9ca213 576 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 173 329 2.9E-46 T 14-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0315 c1acc266289fedb1c7214df97c9ca213 576 Gene3D G3DSA:3.90.480.20 17 417 5.7E-90 T 14-10-2018 YP_0315 c1acc266289fedb1c7214df97c9ca213 576 Gene3D G3DSA:3.30.413.10 141 348 5.7E-90 T 14-10-2018 YP_0315 c1acc266289fedb1c7214df97c9ca213 576 Gene3D G3DSA:3.30.413.10 426 568 1.4E-35 T 14-10-2018 YP_0315 c1acc266289fedb1c7214df97c9ca213 576 SUPERFAMILY SSF55124 346 424 7.2E-22 T 14-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0315 c1acc266289fedb1c7214df97c9ca213 576 SUPERFAMILY SSF55124 13 142 3.27E-26 T 14-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_1971 36fafdf9d1ab30541e5d0e0d34a785e0 154 SUPERFAMILY SSF54427 25 130 6.0E-35 T 14-10-2018 IPR032710 NTF2-like domain superfamily YP_1971 36fafdf9d1ab30541e5d0e0d34a785e0 154 Gene3D G3DSA:3.10.450.50 2 154 1.9E-51 T 14-10-2018 YP_1971 36fafdf9d1ab30541e5d0e0d34a785e0 154 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 1 130 29.041 T 14-10-2018 IPR023006 Uncharacterised protein family UPF0225 YP_1971 36fafdf9d1ab30541e5d0e0d34a785e0 154 SUPERFAMILY SSF103642 134 153 1.24E-6 T 14-10-2018 YP_1971 36fafdf9d1ab30541e5d0e0d34a785e0 154 Pfam PF02810 SEC-C motif 3 19 2.9E-6 T 14-10-2018 IPR004027 SEC-C motif YP_1971 36fafdf9d1ab30541e5d0e0d34a785e0 154 Pfam PF02810 SEC-C motif 136 154 4.8E-8 T 14-10-2018 IPR004027 SEC-C motif YP_1650 a5a207873243aed0db6eba4ea3176e91 525 Gene3D G3DSA:2.30.38.10 341 416 6.3E-29 T 14-10-2018 YP_1650 a5a207873243aed0db6eba4ea3176e91 525 Gene3D G3DSA:3.30.300.310 418 520 4.8E-26 T 14-10-2018 YP_1650 a5a207873243aed0db6eba4ea3176e91 525 Gene3D G3DSA:3.40.50.980 168 340 2.4E-53 T 14-10-2018 YP_1650 a5a207873243aed0db6eba4ea3176e91 525 SUPERFAMILY SSF56801 10 518 6.67E-126 T 14-10-2018 YP_1650 a5a207873243aed0db6eba4ea3176e91 525 ProSitePatterns PS00455 Putative AMP-binding domain signature. 174 185 - T 14-10-2018 IPR020845 AMP-binding, conserved site YP_1650 a5a207873243aed0db6eba4ea3176e91 525 Pfam PF13193 AMP-binding enzyme C-terminal domain 431 506 8.6E-14 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain YP_1650 a5a207873243aed0db6eba4ea3176e91 525 Pfam PF00501 AMP-binding enzyme 21 422 7.3E-79 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YP_1650 a5a207873243aed0db6eba4ea3176e91 525 Gene3D G3DSA:3.40.50.980 15 165 2.9E-35 T 14-10-2018 YP_3429 cb9a69db0a20078cb64b171e8b2047f6 448 Pfam PF07690 Major Facilitator Superfamily 37 356 6.0E-10 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_3429 cb9a69db0a20078cb64b171e8b2047f6 448 SUPERFAMILY SSF103473 25 432 4.45E-26 T 14-10-2018 IPR036259 MFS transporter superfamily YP_3429 cb9a69db0a20078cb64b171e8b2047f6 448 Gene3D G3DSA:1.20.1250.20 105 427 4.0E-16 T 14-10-2018 YP_0195 45380dc076f602c4d083132ba0aafc2e 244 Pfam PF08348 YheO-like PAS domain 33 141 6.5E-36 T 14-10-2018 IPR013559 YheO-like YP_0195 45380dc076f602c4d083132ba0aafc2e 244 Pfam PF13309 HTH domain 175 232 3.3E-19 T 14-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain YP_0195 45380dc076f602c4d083132ba0aafc2e 244 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 30 145 5.0E-63 T 14-10-2018 IPR013559 YheO-like YP_0197 699318a71524e7a6b04f82d0da248795 121 SUPERFAMILY SSF75169 4 121 9.94E-38 T 14-10-2018 IPR027396 DsrEFH-like YP_0197 699318a71524e7a6b04f82d0da248795 121 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 5 121 2.6E-48 T 14-10-2018 IPR017462 Sulphur relay, TusC/DsrF YP_0197 699318a71524e7a6b04f82d0da248795 121 Pfam PF02635 DsrE/DsrF-like family 4 121 1.7E-24 T 14-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein YP_0197 699318a71524e7a6b04f82d0da248795 121 Hamap MF_00389 Protein TusC [tusC]. 3 121 37.128 T 14-10-2018 IPR037450 Sulphur relay, TusC YP_0197 699318a71524e7a6b04f82d0da248795 121 Gene3D G3DSA:3.40.1260.10 3 121 3.6E-39 T 14-10-2018 IPR027396 DsrEFH-like YP_0138 321cb0423ded7f4770d7ff721f665962 450 SUPERFAMILY SSF47384 232 289 2.16E-11 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_0138 321cb0423ded7f4770d7ff721f665962 450 Gene3D G3DSA:1.10.287.130 178 288 2.8E-22 T 14-10-2018 YP_0138 321cb0423ded7f4770d7ff721f665962 450 Gene3D G3DSA:3.30.565.10 294 443 5.2E-38 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0138 321cb0423ded7f4770d7ff721f665962 450 SMART SM00388 233 293 1.7E-11 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0138 321cb0423ded7f4770d7ff721f665962 450 Pfam PF00672 HAMP domain 182 225 7.0E-9 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_0138 321cb0423ded7f4770d7ff721f665962 450 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 289 2.7E-10 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0138 321cb0423ded7f4770d7ff721f665962 450 SUPERFAMILY SSF55874 292 442 6.68E-32 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0138 321cb0423ded7f4770d7ff721f665962 450 SMART SM00387 332 440 2.5E-28 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0138 321cb0423ded7f4770d7ff721f665962 450 SMART SM00304 180 232 1.7E-5 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_0138 321cb0423ded7f4770d7ff721f665962 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 418 3.8E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0138 321cb0423ded7f4770d7ff721f665962 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 395 3.8E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0138 321cb0423ded7f4770d7ff721f665962 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 381 3.8E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0138 321cb0423ded7f4770d7ff721f665962 450 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 439 1.4E-18 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_3930 1b36f089fd512cd2b0db4879954e2bf6 299 SUPERFAMILY SSF51658 8 289 8.15E-37 T 14-10-2018 IPR036237 Xylose isomerase-like superfamily YP_3930 1b36f089fd512cd2b0db4879954e2bf6 299 Pfam PF01261 Xylose isomerase-like TIM barrel 20 228 2.3E-27 T 14-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain YP_3930 1b36f089fd512cd2b0db4879954e2bf6 299 Gene3D G3DSA:3.20.20.150 6 296 5.1E-44 T 14-10-2018 YP_3379 be6c634f64d90b53f0f2797f821a280f 510 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 3 504 43.674 T 14-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YP_3379 be6c634f64d90b53f0f2797f821a280f 510 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 4 508 3.5E-217 T 14-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YP_3379 be6c634f64d90b53f0f2797f821a280f 510 Gene3D G3DSA:1.10.275.10 2 197 9.1E-70 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal YP_3379 be6c634f64d90b53f0f2797f821a280f 510 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 155 - T 14-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 YP_3379 be6c634f64d90b53f0f2797f821a280f 510 SUPERFAMILY SSF48557 3 506 1.41E-190 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 YP_3379 be6c634f64d90b53f0f2797f821a280f 510 Pfam PF00221 Aromatic amino acid lyase 11 470 6.0E-184 T 14-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 YP_3379 be6c634f64d90b53f0f2797f821a280f 510 Gene3D G3DSA:1.20.200.10 198 509 4.2E-124 T 14-10-2018 YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 581 3.5E-243 T 14-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 Pfam PF00890 FAD binding domain 7 397 3.0E-114 T 14-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 PIRSF PIRSF000171 1 579 1.9E-41 T 14-10-2018 YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 14-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 SUPERFAMILY SSF51905 3 416 1.89E-70 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 375 382 2.1E-5 T 14-10-2018 YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.1E-5 T 14-10-2018 YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 Gene3D G3DSA:3.90.700.10 237 363 2.3E-163 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 360 382 1.5E-9 T 14-10-2018 YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.5E-9 T 14-10-2018 YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 SUPERFAMILY SSF46977 444 583 7.46E-45 T 14-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 Gene3D G3DSA:4.10.80.40 543 577 7.5E-19 T 14-10-2018 YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 581 7.5E-38 T 14-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 SUPERFAMILY SSF56425 227 358 1.79E-43 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 Gene3D G3DSA:3.50.50.60 7 409 2.3E-163 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 TIGRFAM TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit 3 582 0.0 T 14-10-2018 IPR005884 Fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 YP_0515 05efe9b64a4d520c4a5000b218d96d7d 607 Gene3D G3DSA:1.20.58.100 424 538 4.0E-35 T 14-10-2018 YP_3985 91e625928693d942438060520003742a 151 Pfam PF13673 Acetyltransferase (GNAT) domain 58 133 5.2E-15 T 14-10-2018 IPR000182 GNAT domain YP_3985 91e625928693d942438060520003742a 151 SUPERFAMILY SSF55729 1 134 4.36E-24 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_3985 91e625928693d942438060520003742a 151 Gene3D G3DSA:3.40.630.30 1 147 6.4E-33 T 14-10-2018 YP_1738 432951570d7c285e4ee4f5e7e166b2f1 388 Gene3D G3DSA:2.130.10.10 1 388 9.4E-168 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 YP_1738 432951570d7c285e4ee4f5e7e166b2f1 388 Pfam PF14583 Oligogalacturonate lyase 1 386 1.2E-259 T 14-10-2018 IPR027946 Oligogalacturonate lyase domain GO:0045490|GO:0047487 KEGG: 00040+4.2.2.6 YP_1738 432951570d7c285e4ee4f5e7e166b2f1 388 SUPERFAMILY SSF82171 15 382 2.75E-30 T 14-10-2018 YP_2507 11bfb9b211ffe1da490d9e92bcd15652 215 Gene3D G3DSA:3.40.630.20 1 215 2.4E-83 T 14-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 YP_2507 11bfb9b211ffe1da490d9e92bcd15652 215 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 2 201 42.116 T 14-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 YP_2507 11bfb9b211ffe1da490d9e92bcd15652 215 Pfam PF01470 Pyroglutamyl peptidase 3 202 5.0E-83 T 14-10-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like MetaCyc: PWY-7942 YP_2507 11bfb9b211ffe1da490d9e92bcd15652 215 SUPERFAMILY SSF53182 1 214 1.57E-76 T 14-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 YP_2507 11bfb9b211ffe1da490d9e92bcd15652 215 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 130 144 - T 14-10-2018 IPR033694 Pyroglutamyl peptidase I, Cys active site MetaCyc: PWY-7942 YP_2507 11bfb9b211ffe1da490d9e92bcd15652 215 ProSitePatterns PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site. 69 85 - T 14-10-2018 IPR033693 Pyroglutamyl peptidase I, Glu active site MetaCyc: PWY-7942 YP_2507 11bfb9b211ffe1da490d9e92bcd15652 215 PIRSF PIRSF015592 1 213 9.1E-90 T 14-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 YP_2507 11bfb9b211ffe1da490d9e92bcd15652 215 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 3 214 1.1E-89 T 14-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 YP_2507 11bfb9b211ffe1da490d9e92bcd15652 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 132 148 5.1E-48 T 14-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 YP_2507 11bfb9b211ffe1da490d9e92bcd15652 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 62 74 5.1E-48 T 14-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 YP_2507 11bfb9b211ffe1da490d9e92bcd15652 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 80 100 5.1E-48 T 14-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 YP_2507 11bfb9b211ffe1da490d9e92bcd15652 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 4 27 5.1E-48 T 14-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 YP_2507 11bfb9b211ffe1da490d9e92bcd15652 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 162 174 5.1E-48 T 14-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 YP_2122 728be1ea40d362499d02ae98fba3ccec 311 SUPERFAMILY SSF53474 45 297 4.93E-49 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_2122 728be1ea40d362499d02ae98fba3ccec 311 Pfam PF07859 alpha/beta hydrolase fold 66 285 1.9E-21 T 14-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 YP_2122 728be1ea40d362499d02ae98fba3ccec 311 Gene3D G3DSA:3.40.50.1820 24 296 1.8E-55 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_3130 e04923a7ce3a5af69ca6ae0ec8165c8a 267 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 186 264 5.9E-19 T 14-10-2018 IPR037682 TonB, C-terminal GO:0055085 YP_3130 e04923a7ce3a5af69ca6ae0ec8165c8a 267 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 186 265 1.9E-22 T 14-10-2018 IPR006260 TonB/TolA, C-terminal YP_3130 e04923a7ce3a5af69ca6ae0ec8165c8a 267 SUPERFAMILY SSF74653 165 265 1.96E-22 T 14-10-2018 YP_3130 e04923a7ce3a5af69ca6ae0ec8165c8a 267 Gene3D G3DSA:3.30.1150.10 111 265 7.1E-31 T 14-10-2018 YP_3511 4f7249d6fb25c7d9b5efb7275a219e62 187 Pfam PF17283 SprT-like zinc ribbon domain 142 182 7.3E-11 T 14-10-2018 IPR035240 SprT-like, zinc ribbon domain YP_3511 4f7249d6fb25c7d9b5efb7275a219e62 187 Hamap MF_00746 Protein SprT [sprT]. 29 182 41.919 T 14-10-2018 IPR023483 Uncharacterised protein family SprT YP_3511 4f7249d6fb25c7d9b5efb7275a219e62 187 Pfam PF10263 SprT-like family 38 136 8.8E-17 T 14-10-2018 IPR006640 SprT-like YP_3511 4f7249d6fb25c7d9b5efb7275a219e62 187 SMART SM00731 33 182 2.5E-68 T 14-10-2018 IPR006640 SprT-like YP_0468 94ecd47e54965a12dfa91ec9e4fb865f 868 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 54 841 0.0 T 14-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 YP_0468 94ecd47e54965a12dfa91ec9e4fb865f 868 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 56 849 32.578 T 14-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 YP_0468 94ecd47e54965a12dfa91ec9e4fb865f 868 PIRSF PIRSF500064 44 858 0.0 T 14-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 YP_0468 94ecd47e54965a12dfa91ec9e4fb865f 868 SMART SM00563 342 469 7.4E-28 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 YP_0468 94ecd47e54965a12dfa91ec9e4fb865f 868 SUPERFAMILY SSF69593 289 530 1.01E-24 T 14-10-2018 YP_0468 94ecd47e54965a12dfa91ec9e4fb865f 868 PIRSF PIRSF000437 62 855 0.0 T 14-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 YP_0468 94ecd47e54965a12dfa91ec9e4fb865f 868 Pfam PF01553 Acyltransferase 324 466 3.9E-26 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 YP_3117 6722da5c5b244a10848ad71305d92091 394 SUPERFAMILY SSF50447 205 301 1.75E-30 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YP_3117 6722da5c5b244a10848ad71305d92091 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 1.4E-14 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YP_3117 6722da5c5b244a10848ad71305d92091 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 2.7E-59 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_3117 6722da5c5b244a10848ad71305d92091 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.5E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_3117 6722da5c5b244a10848ad71305d92091 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.5E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_3117 6722da5c5b244a10848ad71305d92091 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.5E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_3117 6722da5c5b244a10848ad71305d92091 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.5E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_3117 6722da5c5b244a10848ad71305d92091 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.5E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YP_3117 6722da5c5b244a10848ad71305d92091 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 8.0E-17 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 YP_3117 6722da5c5b244a10848ad71305d92091 394 Gene3D G3DSA:2.40.30.10 206 334 5.6E-52 T 14-10-2018 YP_3117 6722da5c5b244a10848ad71305d92091 394 Gene3D G3DSA:2.40.30.10 338 393 8.9E-29 T 14-10-2018 YP_3117 6722da5c5b244a10848ad71305d92091 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 1.4E-33 T 14-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YP_3117 6722da5c5b244a10848ad71305d92091 394 SUPERFAMILY SSF50465 298 393 1.78E-35 T 14-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YP_3117 6722da5c5b244a10848ad71305d92091 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site YP_3117 6722da5c5b244a10848ad71305d92091 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 61.224 T 14-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YP_3117 6722da5c5b244a10848ad71305d92091 394 SUPERFAMILY SSF52540 6 219 8.65E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3117 6722da5c5b244a10848ad71305d92091 394 Gene3D G3DSA:3.40.50.300 1 203 1.6E-71 T 14-10-2018 YP_3117 6722da5c5b244a10848ad71305d92091 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 394 1.2E-237 T 14-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YP_0694 7a614f4d224b88413122774aa74336d2 413 TIGRFAM TIGR01937 nqrB: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit 3 408 6.5E-195 T 14-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 YP_0694 7a614f4d224b88413122774aa74336d2 413 Hamap MF_00426 Na(+)-translocating NADH-quinone reductase subunit B [nqrB]. 2 412 36.684 T 14-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 YP_0694 7a614f4d224b88413122774aa74336d2 413 PIRSF PIRSF016055 1 413 2.8E-198 T 14-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 YP_0694 7a614f4d224b88413122774aa74336d2 413 Pfam PF03116 NQR2, RnfD, RnfE family 43 405 4.4E-107 T 14-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 YP_pCD92 553b3eb02cf554729ab4566099209155 211 ProSitePatterns PS00398 Site-specific recombinases signature 2. 86 98 - T 14-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 YP_pCD92 553b3eb02cf554729ab4566099209155 211 ProSitePatterns PS00397 Site-specific recombinases active site. 34 42 - T 14-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 YP_pCD92 553b3eb02cf554729ab4566099209155 211 SMART SM00857 31 167 1.2E-49 T 14-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 YP_pCD92 553b3eb02cf554729ab4566099209155 211 Gene3D G3DSA:1.10.10.60 167 211 6.8E-20 T 14-10-2018 YP_pCD92 553b3eb02cf554729ab4566099209155 211 SUPERFAMILY SSF46689 169 209 1.02E-9 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_pCD92 553b3eb02cf554729ab4566099209155 211 Pfam PF00239 Resolvase, N terminal domain 32 166 3.9E-40 T 14-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 YP_pCD92 553b3eb02cf554729ab4566099209155 211 Pfam PF02796 Helix-turn-helix domain of resolvase 169 209 3.4E-12 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_pCD92 553b3eb02cf554729ab4566099209155 211 Gene3D G3DSA:3.40.50.1390 29 150 3.9E-48 T 14-10-2018 YP_pCD92 553b3eb02cf554729ab4566099209155 211 SUPERFAMILY SSF53041 29 166 4.71E-42 T 14-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 YP_3158 022a30a1b4a2f66d0a8afe0249ccc00d 492 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 22 486 39.259 T 14-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 YP_3158 022a30a1b4a2f66d0a8afe0249ccc00d 492 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 35 368 3.3E-134 T 14-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 YP_3158 022a30a1b4a2f66d0a8afe0249ccc00d 492 Gene3D G3DSA:1.10.1040.10 209 492 3.7E-126 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YP_3158 022a30a1b4a2f66d0a8afe0249ccc00d 492 Gene3D G3DSA:3.40.50.720 1 208 1.0E-86 T 14-10-2018 YP_3158 022a30a1b4a2f66d0a8afe0249ccc00d 492 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 210 342 7.7E-26 T 14-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 YP_3158 022a30a1b4a2f66d0a8afe0249ccc00d 492 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 355 483 1.2E-21 T 14-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 YP_3158 022a30a1b4a2f66d0a8afe0249ccc00d 492 SUPERFAMILY SSF48179 210 343 2.04E-39 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_3158 022a30a1b4a2f66d0a8afe0249ccc00d 492 SUPERFAMILY SSF51735 30 207 1.45E-57 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3158 022a30a1b4a2f66d0a8afe0249ccc00d 492 SUPERFAMILY SSF48179 348 485 2.72E-41 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_3158 022a30a1b4a2f66d0a8afe0249ccc00d 492 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 35 204 4.2E-59 T 14-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 YP_2901 a1b2a6d61f6de121cdaeef765ae90442 496 Pfam PF08666 SAF domain 11 80 1.3E-11 T 14-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 YP_2901 a1b2a6d61f6de121cdaeef765ae90442 496 SMART SM00858 11 82 1.0E-11 T 14-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 YP_2901 a1b2a6d61f6de121cdaeef765ae90442 496 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 109 495 2.1E-155 T 14-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 YP_2901 a1b2a6d61f6de121cdaeef765ae90442 496 Gene3D G3DSA:3.90.1210.30 3 85 1.7E-24 T 14-10-2018 YP_1691 773001f960131172e6b9b43bf6412ea8 176 Gene3D G3DSA:3.40.30.10 29 176 2.7E-36 T 14-10-2018 YP_1691 773001f960131172e6b9b43bf6412ea8 176 Pfam PF00578 AhpC/TSA family 39 152 2.1E-19 T 14-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 YP_1691 773001f960131172e6b9b43bf6412ea8 176 SUPERFAMILY SSF52833 36 172 2.14E-34 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_0974 dd9d1762d2ed0fa08fa7419d2971ea4b 236 Pfam PF09209 Domain of unknown function (DUF1956) 104 230 8.0E-35 T 14-10-2018 IPR015292 Transcription regulator YbiH, C-terminal YP_0974 dd9d1762d2ed0fa08fa7419d2971ea4b 236 ProSitePatterns PS01081 TetR-type HTH domain signature. 38 68 - T 14-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YP_0974 dd9d1762d2ed0fa08fa7419d2971ea4b 236 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 72 7.5E-14 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YP_0974 dd9d1762d2ed0fa08fa7419d2971ea4b 236 Gene3D G3DSA:1.10.357.10 73 235 1.1E-51 T 14-10-2018 YP_0974 dd9d1762d2ed0fa08fa7419d2971ea4b 236 SUPERFAMILY SSF46689 13 94 3.75E-21 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0974 dd9d1762d2ed0fa08fa7419d2971ea4b 236 SUPERFAMILY SSF48498 101 231 9.56E-37 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YP_0974 dd9d1762d2ed0fa08fa7419d2971ea4b 236 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 39 1.7E-7 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YP_0974 dd9d1762d2ed0fa08fa7419d2971ea4b 236 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 47 70 1.7E-7 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YP_0974 dd9d1762d2ed0fa08fa7419d2971ea4b 236 Gene3D G3DSA:1.10.10.60 12 72 8.8E-26 T 14-10-2018 YP_0932 ec7da767724ddf9212f152177bbe8d1b 726 Gene3D G3DSA:3.40.50.300 503 689 6.5E-20 T 14-10-2018 YP_0932 ec7da767724ddf9212f152177bbe8d1b 726 Pfam PF06733 DEAD_2 199 263 2.9E-7 T 14-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 YP_0932 ec7da767724ddf9212f152177bbe8d1b 726 Pfam PF13307 Helicase C-terminal domain 534 688 5.1E-24 T 14-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 YP_0932 ec7da767724ddf9212f152177bbe8d1b 726 SUPERFAMILY SSF52540 15 672 6.14E-16 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0932 ec7da767724ddf9212f152177bbe8d1b 726 SMART SM00487 23 307 0.0016 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_0932 ec7da767724ddf9212f152177bbe8d1b 726 SMART SM00488 18 294 0.0035 T 14-10-2018 IPR006554 Helicase-like, DEXD box c2 type GO:0004003|GO:0016818 YP_0932 ec7da767724ddf9212f152177bbe8d1b 726 SMART SM00491 545 677 2.9E-32 T 14-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 YP_0932 ec7da767724ddf9212f152177bbe8d1b 726 Hamap MF_02205 ATP-dependent DNA helicase DinG [dinG]. 34 696 34.545 T 14-10-2018 IPR039000 ATP-dependent DNA helicase DinG GO:0004003 YP_0932 ec7da767724ddf9212f152177bbe8d1b 726 Gene3D G3DSA:3.40.50.300 26 287 1.8E-39 T 14-10-2018 YP_pMT047 ca26c786613f2a3b07879523193a60df 771 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 140 220 1.2E-9 T 14-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_pMT047 ca26c786613f2a3b07879523193a60df 771 SUPERFAMILY SSF51998 223 741 1.1E-157 T 14-10-2018 YP_pMT047 ca26c786613f2a3b07879523193a60df 771 SUPERFAMILY SSF48168 7 222 1.83E-60 T 14-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_pMT047 ca26c786613f2a3b07879523193a60df 771 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 142 738 6.3E-166 T 14-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_pMT047 ca26c786613f2a3b07879523193a60df 771 Pfam PF03477 ATP cone domain 2 88 2.6E-9 T 14-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 YP_pMT047 ca26c786613f2a3b07879523193a60df 771 Pfam PF02867 Ribonucleotide reductase, barrel domain 224 734 5.1E-113 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_pMT047 ca26c786613f2a3b07879523193a60df 771 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 602 624 - T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_pMT047 ca26c786613f2a3b07879523193a60df 771 PRINTS PR01183 Ribonucleotide reductase large chain signature 434 445 2.5E-34 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_pMT047 ca26c786613f2a3b07879523193a60df 771 PRINTS PR01183 Ribonucleotide reductase large chain signature 474 497 2.5E-34 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_pMT047 ca26c786613f2a3b07879523193a60df 771 PRINTS PR01183 Ribonucleotide reductase large chain signature 540 563 2.5E-34 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_pMT047 ca26c786613f2a3b07879523193a60df 771 PRINTS PR01183 Ribonucleotide reductase large chain signature 512 534 2.5E-34 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_pMT047 ca26c786613f2a3b07879523193a60df 771 PRINTS PR01183 Ribonucleotide reductase large chain signature 613 640 2.5E-34 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_pMT047 ca26c786613f2a3b07879523193a60df 771 PRINTS PR01183 Ribonucleotide reductase large chain signature 299 318 2.5E-34 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_pMT047 ca26c786613f2a3b07879523193a60df 771 Gene3D G3DSA:3.20.70.20 76 744 8.0E-147 T 14-10-2018 YP_1504 a2d60c45eb8361b23d609e3fe6a42adb 265 Gene3D G3DSA:1.10.10.10 25 98 1.6E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1504 a2d60c45eb8361b23d609e3fe6a42adb 265 SMART SM00345 32 95 2.9E-13 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_1504 a2d60c45eb8361b23d609e3fe6a42adb 265 Gene3D G3DSA:3.40.1410.10 99 260 1.9E-45 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YP_1504 a2d60c45eb8361b23d609e3fe6a42adb 265 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 69 85 4.1E-8 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_1504 a2d60c45eb8361b23d609e3fe6a42adb 265 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 69 4.1E-8 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_1504 a2d60c45eb8361b23d609e3fe6a42adb 265 SMART SM00866 115 251 7.9E-38 T 14-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 YP_1504 a2d60c45eb8361b23d609e3fe6a42adb 265 Pfam PF07702 UTRA domain 115 251 2.1E-38 T 14-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 YP_1504 a2d60c45eb8361b23d609e3fe6a42adb 265 SUPERFAMILY SSF64288 102 256 1.52E-42 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YP_1504 a2d60c45eb8361b23d609e3fe6a42adb 265 Pfam PF00392 Bacterial regulatory proteins, gntR family 32 93 2.1E-13 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_1504 a2d60c45eb8361b23d609e3fe6a42adb 265 SUPERFAMILY SSF46785 28 98 3.42E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3370 e401ef15b3f73838f8fe0c6207374513 509 Pfam PF07730 Histidine kinase 310 373 8.1E-10 T 14-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 YP_3370 e401ef15b3f73838f8fe0c6207374513 509 SMART SM00387 413 503 6.3E-8 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_3370 e401ef15b3f73838f8fe0c6207374513 509 Gene3D G3DSA:3.30.565.10 388 502 4.2E-26 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3370 e401ef15b3f73838f8fe0c6207374513 509 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 416 500 1.4E-6 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_3370 e401ef15b3f73838f8fe0c6207374513 509 Pfam PF05231 MASE1 7 282 7.1E-17 T 14-10-2018 IPR007895 MASE1 YP_3370 e401ef15b3f73838f8fe0c6207374513 509 SUPERFAMILY SSF55874 384 500 8.25E-17 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_1412 c6b3b6a9c828649bcdc889729b416134 370 Hamap MF_02040 Iron-sulfur cluster carrier protein. 102 351 36.658 T 14-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein YP_1412 c6b3b6a9c828649bcdc889729b416134 370 SUPERFAMILY SSF117916 14 85 8.83E-5 T 14-10-2018 IPR034904 Fe-S cluster assembly domain superfamily YP_1412 c6b3b6a9c828649bcdc889729b416134 370 Gene3D G3DSA:3.40.50.300 96 349 3.7E-79 T 14-10-2018 YP_1412 c6b3b6a9c828649bcdc889729b416134 370 ProSitePatterns PS01215 Mrp family signature. 214 230 - T 14-10-2018 IPR000808 Mrp, conserved site GO:0005524 YP_1412 c6b3b6a9c828649bcdc889729b416134 370 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 107 350 3.9E-99 T 14-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 YP_1412 c6b3b6a9c828649bcdc889729b416134 370 SUPERFAMILY SSF52540 109 356 3.35E-55 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3024 f85ca7c750d5413b93de79caa77adfa5 342 Pfam PF00158 Sigma-54 interaction domain 19 183 8.5E-66 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 YP_3024 f85ca7c750d5413b93de79caa77adfa5 342 SUPERFAMILY SSF46689 228 330 5.38E-9 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3024 f85ca7c750d5413b93de79caa77adfa5 342 SUPERFAMILY SSF52540 26 254 1.56E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3024 f85ca7c750d5413b93de79caa77adfa5 342 Gene3D G3DSA:1.10.10.60 271 337 1.9E-8 T 14-10-2018 YP_3024 f85ca7c750d5413b93de79caa77adfa5 342 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 228 237 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site YP_3024 f85ca7c750d5413b93de79caa77adfa5 342 Pfam PF02954 Bacterial regulatory protein, Fis family 296 329 3.8E-10 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YP_3024 f85ca7c750d5413b93de79caa77adfa5 342 Gene3D G3DSA:1.10.8.60 187 252 6.8E-21 T 14-10-2018 YP_3024 f85ca7c750d5413b93de79caa77adfa5 342 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 297 314 1.7E-5 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YP_3024 f85ca7c750d5413b93de79caa77adfa5 342 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 314 334 1.7E-5 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YP_3024 f85ca7c750d5413b93de79caa77adfa5 342 Gene3D G3DSA:3.40.50.300 6 186 8.0E-59 T 14-10-2018 YP_3024 f85ca7c750d5413b93de79caa77adfa5 342 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 40 53 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YP_3024 f85ca7c750d5413b93de79caa77adfa5 342 SMART SM00382 36 179 9.4E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3024 f85ca7c750d5413b93de79caa77adfa5 342 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 102 117 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YP_2138 ba832b7e4258813a7a771d75fb96373a 75 TIGRFAM TIGR02976 phageshock_pspB: phage shock protein B 1 74 2.2E-35 T 14-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 YP_2138 ba832b7e4258813a7a771d75fb96373a 75 Pfam PF06667 Phage shock protein B 4 74 1.2E-32 T 14-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 YP_2319 17acfc09e1255a46e2b399361cf703dc 180 Pfam PF16809 NleF caspase inhibitor 37 179 2.8E-59 T 14-10-2018 IPR031829 Effector protein NleF YP_2319 17acfc09e1255a46e2b399361cf703dc 180 Gene3D G3DSA:1.20.1260.90 33 177 3.9E-18 T 14-10-2018 IPR038334 NleF superfamily YP_0696 043eaf2f0ecbf755feb087b9261c125a 209 PIRSF PIRSF006102 3 209 1.8E-70 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YP_0696 043eaf2f0ecbf755feb087b9261c125a 209 Pfam PF02508 Rnf-Nqr subunit, membrane protein 9 195 1.0E-62 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YP_0696 043eaf2f0ecbf755feb087b9261c125a 209 TIGRFAM TIGR01939 nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit 4 206 1.2E-104 T 14-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 YP_0696 043eaf2f0ecbf755feb087b9261c125a 209 Hamap MF_00428 Na(+)-translocating NADH-quinone reductase subunit D [nqrD]. 2 207 36.87 T 14-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 YP_1308 2c4effdd0345f936adb3b536d21125b4 397 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 397 225.455 T 14-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 YP_1308 2c4effdd0345f936adb3b536d21125b4 397 SUPERFAMILY SSF51658 1 383 2.02E-78 T 14-10-2018 IPR036237 Xylose isomerase-like superfamily YP_1308 2c4effdd0345f936adb3b536d21125b4 397 PIRSF PIRSF016049 1 392 8.2E-178 T 14-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 YP_1308 2c4effdd0345f936adb3b536d21125b4 397 Gene3D G3DSA:3.20.20.150 1 391 1.0E-144 T 14-10-2018 YP_1308 2c4effdd0345f936adb3b536d21125b4 397 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 1 392 2.3E-211 T 14-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 YP_1308 2c4effdd0345f936adb3b536d21125b4 397 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 388 1.3E-155 T 14-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 YP_2282 4f2eb75c46d89f1bb322ee26d10dd611 334 Pfam PF09615 CRISPR-associated protein (Cas_Csy3) 8 330 2.4E-150 T 14-10-2018 IPR013399 CRISPR-associated protein Csy3 YP_2282 4f2eb75c46d89f1bb322ee26d10dd611 334 TIGRFAM TIGR02566 cas_Csy3: CRISPR type I-F/YPEST-associated protein Csy3 7 333 7.3E-153 T 14-10-2018 IPR013399 CRISPR-associated protein Csy3 YP_1992 9d7264bc3ea2bbdc747d9328def3e045 252 Gene3D G3DSA:3.30.2420.10 164 252 2.0E-28 T 14-10-2018 YP_1992 9d7264bc3ea2bbdc747d9328def3e045 252 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 175 245 3.6E-18 T 14-10-2018 IPR006260 TonB/TolA, C-terminal YP_1992 9d7264bc3ea2bbdc747d9328def3e045 252 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 174 235 5.8E-16 T 14-10-2018 IPR037682 TonB, C-terminal GO:0055085 YP_1992 9d7264bc3ea2bbdc747d9328def3e045 252 Pfam PF16031 TonB N-terminal region 36 171 6.1E-27 T 14-10-2018 YP_1992 9d7264bc3ea2bbdc747d9328def3e045 252 PRINTS PR01374 Gram-negative bacterial tonB protein signature 190 208 7.7E-30 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 YP_1992 9d7264bc3ea2bbdc747d9328def3e045 252 PRINTS PR01374 Gram-negative bacterial tonB protein signature 169 190 7.7E-30 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 YP_1992 9d7264bc3ea2bbdc747d9328def3e045 252 PRINTS PR01374 Gram-negative bacterial tonB protein signature 109 119 7.7E-30 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 YP_1992 9d7264bc3ea2bbdc747d9328def3e045 252 PRINTS PR01374 Gram-negative bacterial tonB protein signature 209 226 7.7E-30 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 YP_1992 9d7264bc3ea2bbdc747d9328def3e045 252 SUPERFAMILY SSF74653 170 237 1.26E-18 T 14-10-2018 YP_0306 937f9571f7b751e668add8b6ea7f9dab 744 Gene3D G3DSA:3.10.20.30 399 472 3.1E-33 T 14-10-2018 IPR012675 Beta-grasp domain superfamily YP_0306 937f9571f7b751e668add8b6ea7f9dab 744 Pfam PF13328 HD domain 46 191 2.6E-41 T 14-10-2018 IPR003607 HD/PDEase domain YP_0306 937f9571f7b751e668add8b6ea7f9dab 744 Gene3D G3DSA:1.10.3210.10 27 207 7.1E-39 T 14-10-2018 YP_0306 937f9571f7b751e668add8b6ea7f9dab 744 Pfam PF04607 Region found in RelA / SpoT proteins 251 360 2.3E-36 T 14-10-2018 IPR007685 RelA/SpoT GO:0015969 YP_0306 937f9571f7b751e668add8b6ea7f9dab 744 Gene3D G3DSA:3.30.460.10 209 341 6.4E-50 T 14-10-2018 YP_0306 937f9571f7b751e668add8b6ea7f9dab 744 Pfam PF13291 ACT domain 664 740 1.7E-17 T 14-10-2018 IPR002912 ACT domain YP_0306 937f9571f7b751e668add8b6ea7f9dab 744 SUPERFAMILY SSF81301 196 409 2.62E-64 T 14-10-2018 YP_0306 937f9571f7b751e668add8b6ea7f9dab 744 SUPERFAMILY SSF55021 665 741 1.49E-13 T 14-10-2018 YP_0306 937f9571f7b751e668add8b6ea7f9dab 744 SMART SM00954 251 361 3.5E-66 T 14-10-2018 IPR007685 RelA/SpoT GO:0015969 YP_0306 937f9571f7b751e668add8b6ea7f9dab 744 Gene3D G3DSA:3.30.70.260 663 743 4.9E-18 T 14-10-2018 YP_0306 937f9571f7b751e668add8b6ea7f9dab 744 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 64 739 2.5E-187 T 14-10-2018 IPR004811 RelA/SpoT family GO:0015969 YP_0306 937f9571f7b751e668add8b6ea7f9dab 744 SUPERFAMILY SSF109604 25 207 7.22E-46 T 14-10-2018 YP_0306 937f9571f7b751e668add8b6ea7f9dab 744 Pfam PF02824 TGS domain 405 464 2.1E-21 T 14-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 YP_0306 937f9571f7b751e668add8b6ea7f9dab 744 SUPERFAMILY SSF81271 398 464 2.62E-22 T 14-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 YP_0731 d633441193f1d0fc6ac9864c5ddf353e 463 Pfam PF00324 Amino acid permease 17 455 7.4E-108 T 14-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 YP_0731 d633441193f1d0fc6ac9864c5ddf353e 463 ProSitePatterns PS00218 Amino acid permeases signature. 42 72 - T 14-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 YP_0731 d633441193f1d0fc6ac9864c5ddf353e 463 Gene3D G3DSA:1.20.1740.10 7 462 1.0E-61 T 14-10-2018 YP_0731 d633441193f1d0fc6ac9864c5ddf353e 463 PIRSF PIRSF006060 4 463 7.3E-72 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_0654 c0955edf2da0b8fc74111682a0a21c77 325 SUPERFAMILY SSF55174 17 69 1.48E-11 T 14-10-2018 YP_0654 c0955edf2da0b8fc74111682a0a21c77 325 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 14-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_0654 c0955edf2da0b8fc74111682a0a21c77 325 Pfam PF00849 RNA pseudouridylate synthase 92 242 4.5E-32 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_0654 c0955edf2da0b8fc74111682a0a21c77 325 SMART SM00363 18 83 1.5E-12 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0654 c0955edf2da0b8fc74111682a0a21c77 325 SUPERFAMILY SSF55120 77 321 2.67E-79 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_0654 c0955edf2da0b8fc74111682a0a21c77 325 Pfam PF01479 S4 domain 18 65 1.0E-11 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0654 c0955edf2da0b8fc74111682a0a21c77 325 Gene3D G3DSA:3.10.290.10 2 76 9.6E-26 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YP_0654 c0955edf2da0b8fc74111682a0a21c77 325 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 14 313 3.1E-107 T 14-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_0654 c0955edf2da0b8fc74111682a0a21c77 325 Gene3D G3DSA:3.30.2350.10 85 316 3.3E-71 T 14-10-2018 YP_1614 cb26653d1499685d410abb400cc1e960 141 Pfam PF13995 YebF-like protein 32 119 1.4E-39 T 14-10-2018 IPR025603 YebF/Colicin-M immunity protein YP_1614 cb26653d1499685d410abb400cc1e960 141 Hamap MF_01435 Protein YebF [yebF]. 6 122 38.535 T 14-10-2018 IPR020236 Uncharacterised protein family YebF YP_1614 cb26653d1499685d410abb400cc1e960 141 ProDom PD077599 YEBF LIPOPROTEIN EXPORTED PERIPLASMIC PRECURSOR SIGNAL SIMILAR PALMITATE MEMBRANE ESCHERICHIA 30 119 2.0E-47 T 14-10-2018 IPR025603 YebF/Colicin-M immunity protein YP_1614 cb26653d1499685d410abb400cc1e960 141 Gene3D G3DSA:3.10.450.300 26 127 1.0E-38 T 14-10-2018 IPR038703 YebF/Cmi superfamily YP_1363 4cdb7ecb5886d04c638c2f5bb69cf7ac 782 Gene3D G3DSA:3.55.50.10 112 208 5.8E-56 T 14-10-2018 YP_1363 4cdb7ecb5886d04c638c2f5bb69cf7ac 782 Pfam PF05954 Phage late control gene D protein (GPD) 34 355 3.0E-63 T 14-10-2018 YP_1363 4cdb7ecb5886d04c638c2f5bb69cf7ac 782 SUPERFAMILY SSF69255 382 471 9.94E-26 T 14-10-2018 YP_1363 4cdb7ecb5886d04c638c2f5bb69cf7ac 782 SUPERFAMILY SSF69279 204 383 5.1E-51 T 14-10-2018 YP_1363 4cdb7ecb5886d04c638c2f5bb69cf7ac 782 Gene3D G3DSA:3.30.1920.30 241 312 5.8E-56 T 14-10-2018 YP_1363 4cdb7ecb5886d04c638c2f5bb69cf7ac 782 Gene3D G3DSA:2.40.50.230 388 471 6.0E-34 T 14-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YP_1363 4cdb7ecb5886d04c638c2f5bb69cf7ac 782 Gene3D G3DSA:2.30.110.50 28 352 5.8E-56 T 14-10-2018 YP_1363 4cdb7ecb5886d04c638c2f5bb69cf7ac 782 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 611 751 9.5E-51 T 14-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal YP_1363 4cdb7ecb5886d04c638c2f5bb69cf7ac 782 SUPERFAMILY SSF69279 22 203 1.3E-46 T 14-10-2018 YP_1363 4cdb7ecb5886d04c638c2f5bb69cf7ac 782 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 26 516 1.3E-189 T 14-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YP_1363 4cdb7ecb5886d04c638c2f5bb69cf7ac 782 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 22 515 2.4E-73 T 14-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YP_1363 4cdb7ecb5886d04c638c2f5bb69cf7ac 782 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 490 592 2.6E-35 T 14-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain YP_2438 4b8553c81c95a952ba43ebf3e3dc8186 268 SUPERFAMILY SSF144059 5 265 6.8E-86 T 14-10-2018 YP_2438 4b8553c81c95a952ba43ebf3e3dc8186 268 PIRSF PIRSF029288 1 267 1.4E-99 T 14-10-2018 IPR009211 Predicted virulence protein, SciE type YP_2438 4b8553c81c95a952ba43ebf3e3dc8186 268 Pfam PF07024 ImpE protein 145 261 1.3E-41 T 14-10-2018 IPR009211 Predicted virulence protein, SciE type YP_2438 4b8553c81c95a952ba43ebf3e3dc8186 268 Gene3D G3DSA:1.25.40.10 7 89 3.8E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_0008 9a27d5dc2a90871a627151e29ae36f09 308 SUPERFAMILY SSF53613 5 306 6.08E-86 T 14-10-2018 IPR029056 Ribokinase-like YP_0008 9a27d5dc2a90871a627151e29ae36f09 308 Hamap MF_01987 Ribokinase [rbsK]. 4 303 26.435 T 14-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 YP_0008 9a27d5dc2a90871a627151e29ae36f09 308 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 7 301 9.0E-113 T 14-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 YP_0008 9a27d5dc2a90871a627151e29ae36f09 308 PRINTS PR00990 Ribokinase signature 35 54 2.0E-37 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YP_0008 9a27d5dc2a90871a627151e29ae36f09 308 PRINTS PR00990 Ribokinase signature 175 190 2.0E-37 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YP_0008 9a27d5dc2a90871a627151e29ae36f09 308 PRINTS PR00990 Ribokinase signature 219 230 2.0E-37 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YP_0008 9a27d5dc2a90871a627151e29ae36f09 308 PRINTS PR00990 Ribokinase signature 8 29 2.0E-37 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YP_0008 9a27d5dc2a90871a627151e29ae36f09 308 PRINTS PR00990 Ribokinase signature 107 120 2.0E-37 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YP_0008 9a27d5dc2a90871a627151e29ae36f09 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 YP_0008 9a27d5dc2a90871a627151e29ae36f09 308 Pfam PF00294 pfkB family carbohydrate kinase 5 296 1.2E-77 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB YP_0008 9a27d5dc2a90871a627151e29ae36f09 308 Gene3D G3DSA:3.40.1190.20 3 302 4.4E-104 T 14-10-2018 IPR029056 Ribokinase-like YP_0711 2bba4a88aae9bf859fc4d706999c715f 367 PRINTS PR00474 Glutamate 5-kinase family signature 148 175 9.4E-57 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 YP_0711 2bba4a88aae9bf859fc4d706999c715f 367 PRINTS PR00474 Glutamate 5-kinase family signature 116 137 9.4E-57 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 YP_0711 2bba4a88aae9bf859fc4d706999c715f 367 PRINTS PR00474 Glutamate 5-kinase family signature 209 229 9.4E-57 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 YP_0711 2bba4a88aae9bf859fc4d706999c715f 367 PRINTS PR00474 Glutamate 5-kinase family signature 42 56 9.4E-57 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 YP_0711 2bba4a88aae9bf859fc4d706999c715f 367 PRINTS PR00474 Glutamate 5-kinase family signature 76 104 9.4E-57 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 YP_0711 2bba4a88aae9bf859fc4d706999c715f 367 SUPERFAMILY SSF53633 6 256 3.14E-65 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YP_0711 2bba4a88aae9bf859fc4d706999c715f 367 Gene3D G3DSA:3.40.1160.10 2 258 6.5E-87 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YP_0711 2bba4a88aae9bf859fc4d706999c715f 367 Pfam PF00696 Amino acid kinase family 6 234 8.1E-44 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 YP_0711 2bba4a88aae9bf859fc4d706999c715f 367 Pfam PF01472 PUA domain 276 350 8.4E-21 T 14-10-2018 IPR002478 PUA domain GO:0003723 YP_0711 2bba4a88aae9bf859fc4d706999c715f 367 SUPERFAMILY SSF88697 276 366 5.36E-23 T 14-10-2018 IPR015947 PUA-like superfamily YP_0711 2bba4a88aae9bf859fc4d706999c715f 367 ProSitePatterns PS00902 Glutamate 5-kinase signature. 207 224 - T 14-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 YP_0711 2bba4a88aae9bf859fc4d706999c715f 367 Hamap MF_00456 Glutamate 5-kinase [proB]. 5 263 35.94 T 14-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 YP_0711 2bba4a88aae9bf859fc4d706999c715f 367 TIGRFAM TIGR01027 proB: glutamate 5-kinase 5 365 2.5E-151 T 14-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 YP_0711 2bba4a88aae9bf859fc4d706999c715f 367 Gene3D G3DSA:2.30.130.10 266 367 1.0E-28 T 14-10-2018 IPR036974 PUA domain superfamily GO:0003723 YP_0711 2bba4a88aae9bf859fc4d706999c715f 367 PIRSF PIRSF000729 1 367 3.4E-141 T 14-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 YP_0711 2bba4a88aae9bf859fc4d706999c715f 367 SMART SM00359 276 359 1.7E-21 T 14-10-2018 IPR002478 PUA domain GO:0003723 YP_2571 b3149ccf4c081df629fb023cd618459b 259 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 177 240 4.7E-16 T 14-10-2018 IPR016148 Pili assembly chaperone, C-terminal YP_2571 b3149ccf4c081df629fb023cd618459b 259 PRINTS PR00969 Pili chaperone signature 78 99 2.8E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_2571 b3149ccf4c081df629fb023cd618459b 259 PRINTS PR00969 Pili chaperone signature 29 38 2.8E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_2571 b3149ccf4c081df629fb023cd618459b 259 PRINTS PR00969 Pili chaperone signature 106 123 2.8E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_2571 b3149ccf4c081df629fb023cd618459b 259 PRINTS PR00969 Pili chaperone signature 132 147 2.8E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_2571 b3149ccf4c081df629fb023cd618459b 259 PRINTS PR00969 Pili chaperone signature 172 187 2.8E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_2571 b3149ccf4c081df629fb023cd618459b 259 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 105 122 - T 14-10-2018 IPR018046 Pili assembly chaperone, conserved site YP_2571 b3149ccf4c081df629fb023cd618459b 259 SUPERFAMILY SSF49354 24 150 8.29E-42 T 14-10-2018 IPR008962 PapD-like superfamily YP_2571 b3149ccf4c081df629fb023cd618459b 259 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 29 150 7.4E-44 T 14-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YP_2571 b3149ccf4c081df629fb023cd618459b 259 Gene3D G3DSA:2.60.40.10 30 151 1.2E-43 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_2571 b3149ccf4c081df629fb023cd618459b 259 SUPERFAMILY SSF49584 158 249 5.23E-16 T 14-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_2571 b3149ccf4c081df629fb023cd618459b 259 Gene3D G3DSA:2.60.40.10 155 251 5.1E-20 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_0391 dbd4d14c4f862596aa706247fcd02bea 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 1.1E-28 T 14-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0391 dbd4d14c4f862596aa706247fcd02bea 82 Pfam PF00886 Ribosomal protein S16 8 68 4.2E-24 T 14-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0391 dbd4d14c4f862596aa706247fcd02bea 82 SUPERFAMILY SSF54565 1 76 1.96E-28 T 14-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0391 dbd4d14c4f862596aa706247fcd02bea 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 23.752 T 14-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0391 dbd4d14c4f862596aa706247fcd02bea 82 Gene3D G3DSA:3.30.1320.10 1 81 1.7E-30 T 14-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0391 dbd4d14c4f862596aa706247fcd02bea 82 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 14-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_1843 1c7e7e34f45d54709f046cda2751cde8 301 Pfam PF13646 HEAT repeats 222 292 2.3E-9 T 14-10-2018 YP_1843 1c7e7e34f45d54709f046cda2751cde8 301 Gene3D G3DSA:1.25.10.10 201 300 2.1E-5 T 14-10-2018 IPR011989 Armadillo-like helical YP_1843 1c7e7e34f45d54709f046cda2751cde8 301 SUPERFAMILY SSF48371 201 291 4.41E-6 T 14-10-2018 IPR016024 Armadillo-type fold YP_1314 801372c40aedc0625d4c23b0b6f9ea94 194 SUPERFAMILY SSF54001 70 189 1.24E-39 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily YP_1314 801372c40aedc0625d4c23b0b6f9ea94 194 Pfam PF00877 NlpC/P60 family 82 185 1.6E-31 T 14-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain YP_1314 801372c40aedc0625d4c23b0b6f9ea94 194 Gene3D G3DSA:3.90.1720.10 65 193 2.8E-45 T 14-10-2018 YP_3765 8577e778336919ab04172e51e9066e4f 397 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 122 360 1.0E-46 T 14-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 YP_3765 8577e778336919ab04172e51e9066e4f 397 SUPERFAMILY SSF53756 49 391 1.54E-78 T 14-10-2018 YP_3765 8577e778336919ab04172e51e9066e4f 397 TIGRFAM TIGR02201 heptsyl_trn_III: putative lipopolysaccharide heptosyltransferase III 49 389 1.8E-118 T 14-10-2018 IPR011916 Lipopolysaccharide heptosyltransferase III, putative YP_3765 8577e778336919ab04172e51e9066e4f 397 Gene3D G3DSA:3.40.50.2000 214 392 5.4E-42 T 14-10-2018 YP_3765 8577e778336919ab04172e51e9066e4f 397 Gene3D G3DSA:3.40.50.2000 42 208 2.6E-36 T 14-10-2018 YP_2664 7f1bf2618a09dd971c6c6c5e06074e0f 220 Pfam PF00072 Response regulator receiver domain 18 129 3.8E-30 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_2664 7f1bf2618a09dd971c6c6c5e06074e0f 220 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 190 202 5.9E-15 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2664 7f1bf2618a09dd971c6c6c5e06074e0f 220 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 190 5.9E-15 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2664 7f1bf2618a09dd971c6c6c5e06074e0f 220 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 174 5.9E-15 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2664 7f1bf2618a09dd971c6c6c5e06074e0f 220 ProSitePatterns PS00622 LuxR-type HTH domain signature. 174 201 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2664 7f1bf2618a09dd971c6c6c5e06074e0f 220 SMART SM00421 157 214 1.3E-24 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2664 7f1bf2618a09dd971c6c6c5e06074e0f 220 SMART SM00448 16 129 4.0E-34 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_2664 7f1bf2618a09dd971c6c6c5e06074e0f 220 Pfam PF00196 Bacterial regulatory proteins, luxR family 159 213 2.1E-22 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2664 7f1bf2618a09dd971c6c6c5e06074e0f 220 SUPERFAMILY SSF46894 140 217 4.76E-22 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_2664 7f1bf2618a09dd971c6c6c5e06074e0f 220 SUPERFAMILY SSF52172 15 147 2.28E-35 T 14-10-2018 IPR011006 CheY-like superfamily YP_2664 7f1bf2618a09dd971c6c6c5e06074e0f 220 Gene3D G3DSA:3.40.50.12740 17 218 5.7E-68 T 14-10-2018 YP_0199 3fda9daf32cf0360a89b79e758bae6a6 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.507 T 14-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0199 3fda9daf32cf0360a89b79e758bae6a6 124 Gene3D G3DSA:2.40.50.140 1 124 1.2E-63 T 14-10-2018 YP_0199 3fda9daf32cf0360a89b79e758bae6a6 124 SUPERFAMILY SSF50249 3 123 2.23E-52 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_0199 3fda9daf32cf0360a89b79e758bae6a6 124 PIRSF PIRSF002133 1 124 1.9E-54 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0199 3fda9daf32cf0360a89b79e758bae6a6 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0199 3fda9daf32cf0360a89b79e758bae6a6 124 Pfam PF00164 Ribosomal protein S12/S23 13 123 7.5E-43 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0199 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 3.1E-60 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0199 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 3.1E-60 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0199 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 3.1E-60 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0199 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 3.1E-60 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0199 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 3.1E-60 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0199 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 3.1E-60 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0199 3fda9daf32cf0360a89b79e758bae6a6 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 9.8E-71 T 14-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_3928 8e39710391f531f3b43312754b90805d 313 SUPERFAMILY SSF46689 254 305 2.28E-12 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3928 8e39710391f531f3b43312754b90805d 313 SUPERFAMILY SSF46689 202 252 1.7E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3928 8e39710391f531f3b43312754b90805d 313 Pfam PF12833 Helix-turn-helix domain 229 303 1.6E-22 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_3928 8e39710391f531f3b43312754b90805d 313 Gene3D G3DSA:2.60.120.10 21 137 5.5E-7 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_3928 8e39710391f531f3b43312754b90805d 313 SMART SM00342 218 301 1.0E-24 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_3928 8e39710391f531f3b43312754b90805d 313 Pfam PF02311 AraC-like ligand binding domain 55 182 2.1E-12 T 14-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 YP_3928 8e39710391f531f3b43312754b90805d 313 Gene3D G3DSA:1.10.10.60 199 307 5.2E-28 T 14-10-2018 YP_3928 8e39710391f531f3b43312754b90805d 313 SUPERFAMILY SSF51215 40 187 8.37E-22 T 14-10-2018 IPR037923 Transcription regulator HTH-like YP_1014 58ee3916fa5a67972363b3f011f7593f 231 SUPERFAMILY SSF161098 5 219 5.76E-52 T 14-10-2018 IPR035906 MetI-like superfamily YP_1014 58ee3916fa5a67972363b3f011f7593f 231 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 12 220 5.8E-75 T 14-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 YP_1014 58ee3916fa5a67972363b3f011f7593f 231 Gene3D G3DSA:1.10.3720.10 2 225 2.0E-64 T 14-10-2018 IPR035906 MetI-like superfamily YP_1014 58ee3916fa5a67972363b3f011f7593f 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 26 227 3.6E-24 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1978 716b1d30738b3e2399bab674bbe47108 214 Pfam PF01914 MarC family integral membrane protein 10 210 5.4E-73 T 14-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 YP_1978 716b1d30738b3e2399bab674bbe47108 214 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 8 206 2.5E-79 T 14-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 YP_4027 d3e43d909f353a6ae466c95f4e0b3af9 140 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 134 1.1E-44 T 14-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4027 d3e43d909f353a6ae466c95f4e0b3af9 140 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 11 88 1.0E-38 T 14-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4027 d3e43d909f353a6ae466c95f4e0b3af9 140 Gene3D G3DSA:2.60.15.10 4 91 2.7E-31 T 14-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4027 d3e43d909f353a6ae466c95f4e0b3af9 140 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 7 85 1.7E-28 T 14-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4027 d3e43d909f353a6ae466c95f4e0b3af9 140 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 90 134 1.6E-12 T 14-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain YP_4027 d3e43d909f353a6ae466c95f4e0b3af9 140 SUPERFAMILY SSF46604 90 138 1.83E-14 T 14-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4027 d3e43d909f353a6ae466c95f4e0b3af9 140 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 4 132 21.0 T 14-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4027 d3e43d909f353a6ae466c95f4e0b3af9 140 Gene3D G3DSA:1.20.5.440 92 135 4.3E-19 T 14-10-2018 YP_4027 d3e43d909f353a6ae466c95f4e0b3af9 140 SUPERFAMILY SSF51344 4 87 6.93E-24 T 14-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_1470 9f068cf6292487a03b264f016e6b820a 435 Gene3D G3DSA:1.20.1250.20 209 410 1.8E-61 T 14-10-2018 YP_1470 9f068cf6292487a03b264f016e6b820a 435 TIGRFAM TIGR00882 2A0105: oligosaccharide:H+ symporter 13 408 4.5E-191 T 14-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YP_1470 9f068cf6292487a03b264f016e6b820a 435 Gene3D G3DSA:1.20.1250.20 9 208 2.5E-55 T 14-10-2018 YP_1470 9f068cf6292487a03b264f016e6b820a 435 PRINTS PR00174 LacY proton/sugar symporter family signature 110 132 3.8E-106 T 14-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YP_1470 9f068cf6292487a03b264f016e6b820a 435 PRINTS PR00174 LacY proton/sugar symporter family signature 353 373 3.8E-106 T 14-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YP_1470 9f068cf6292487a03b264f016e6b820a 435 PRINTS PR00174 LacY proton/sugar symporter family signature 152 170 3.8E-106 T 14-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YP_1470 9f068cf6292487a03b264f016e6b820a 435 PRINTS PR00174 LacY proton/sugar symporter family signature 291 317 3.8E-106 T 14-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YP_1470 9f068cf6292487a03b264f016e6b820a 435 PRINTS PR00174 LacY proton/sugar symporter family signature 267 288 3.8E-106 T 14-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YP_1470 9f068cf6292487a03b264f016e6b820a 435 PRINTS PR00174 LacY proton/sugar symporter family signature 75 104 3.8E-106 T 14-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YP_1470 9f068cf6292487a03b264f016e6b820a 435 PRINTS PR00174 LacY proton/sugar symporter family signature 221 249 3.8E-106 T 14-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YP_1470 9f068cf6292487a03b264f016e6b820a 435 PRINTS PR00174 LacY proton/sugar symporter family signature 322 341 3.8E-106 T 14-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YP_1470 9f068cf6292487a03b264f016e6b820a 435 Pfam PF01306 LacY proton/sugar symporter 9 412 3.2E-191 T 14-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YP_1470 9f068cf6292487a03b264f016e6b820a 435 SUPERFAMILY SSF103473 12 407 1.96E-48 T 14-10-2018 IPR036259 MFS transporter superfamily YP_2987 4c196a703a4c15fd4fdaece72a1ac489 757 SMART SM00434 12 462 2.1E-235 T 14-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YP_2987 4c196a703a4c15fd4fdaece72a1ac489 757 SUPERFAMILY SSF56719 32 483 4.84E-153 T 14-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 YP_2987 4c196a703a4c15fd4fdaece72a1ac489 757 Gene3D G3DSA:1.10.268.10 345 484 2.2E-45 T 14-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 YP_2987 4c196a703a4c15fd4fdaece72a1ac489 757 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 9 742 0.0 T 14-10-2018 YP_2987 4c196a703a4c15fd4fdaece72a1ac489 757 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 5 743 33.855 T 14-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_2987 4c196a703a4c15fd4fdaece72a1ac489 757 Gene3D G3DSA:2.120.10.90 501 726 6.9E-10 T 14-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YP_2987 4c196a703a4c15fd4fdaece72a1ac489 757 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 696 2.0E-5 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 YP_2987 4c196a703a4c15fd4fdaece72a1ac489 757 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 597 634 5.6E-5 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 YP_2987 4c196a703a4c15fd4fdaece72a1ac489 757 Gene3D G3DSA:3.90.199.10 31 162 7.0E-59 T 14-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 YP_2987 4c196a703a4c15fd4fdaece72a1ac489 757 SUPERFAMILY SSF101904 498 741 6.02E-51 T 14-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YP_2987 4c196a703a4c15fd4fdaece72a1ac489 757 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 469 9.0E-133 T 14-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YP_2987 4c196a703a4c15fd4fdaece72a1ac489 757 Gene3D G3DSA:3.30.1360.40 163 344 5.5E-71 T 14-10-2018 YP_0452 fd8515cdf75d9ee4b4568c0aa3798bbe 208 Gene3D G3DSA:2.60.60.30 29 196 1.7E-48 T 14-10-2018 YP_0452 fd8515cdf75d9ee4b4568c0aa3798bbe 208 Pfam PF02342 TerD domain 13 196 6.2E-47 T 14-10-2018 IPR003325 TerD domain YP_1126 90241b120da54819515b91f49296cb16 95 Gene3D G3DSA:3.30.70.100 2 95 3.5E-32 T 14-10-2018 YP_1126 90241b120da54819515b91f49296cb16 95 SUPERFAMILY SSF54909 1 90 9.08E-25 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel YP_1126 90241b120da54819515b91f49296cb16 95 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 74 1.0E-10 T 14-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain YP_1809 5d62cdd0f078c03834b3c297e4451faa 350 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 5 343 41.328 T 14-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 YP_1809 5d62cdd0f078c03834b3c297e4451faa 350 PIRSF PIRSF000876 2 347 1.3E-137 T 14-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 YP_1809 5d62cdd0f078c03834b3c297e4451faa 350 SUPERFAMILY SSF52738 157 344 2.22E-75 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal YP_1809 5d62cdd0f078c03834b3c297e4451faa 350 Gene3D G3DSA:3.40.50.180 149 350 2.5E-84 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal YP_1809 5d62cdd0f078c03834b3c297e4451faa 350 SMART SM00448 5 120 2.6E-21 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1809 5d62cdd0f078c03834b3c297e4451faa 350 Gene3D G3DSA:3.40.50.2300 2 134 9.8E-31 T 14-10-2018 YP_1809 5d62cdd0f078c03834b3c297e4451faa 350 SUPERFAMILY SSF52172 2 109 1.99E-27 T 14-10-2018 IPR011006 CheY-like superfamily YP_1809 5d62cdd0f078c03834b3c297e4451faa 350 Pfam PF00072 Response regulator receiver domain 7 110 2.2E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1809 5d62cdd0f078c03834b3c297e4451faa 350 Pfam PF01339 CheB methylesterase 160 337 1.4E-62 T 14-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 YP_0617 021fb8e4bf623bd8a980fd8a3c6b16d3 212 Gene3D G3DSA:3.40.50.720 1 210 2.8E-49 T 14-10-2018 YP_0617 021fb8e4bf623bd8a980fd8a3c6b16d3 212 SMART SM00859 3 101 0.0054 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 YP_0617 021fb8e4bf623bd8a980fd8a3c6b16d3 212 SUPERFAMILY SSF51735 1 199 5.96E-37 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1464 2170942f84359f8a1cae061c5e24ee8f 209 Pfam PF00072 Response regulator receiver domain 4 115 1.9E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1464 2170942f84359f8a1cae061c5e24ee8f 209 SMART SM00448 2 115 4.0E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1464 2170942f84359f8a1cae061c5e24ee8f 209 SUPERFAMILY SSF46894 130 206 4.08E-20 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_1464 2170942f84359f8a1cae061c5e24ee8f 209 SUPERFAMILY SSF52172 1 125 6.97E-28 T 14-10-2018 IPR011006 CheY-like superfamily YP_1464 2170942f84359f8a1cae061c5e24ee8f 209 SMART SM00421 143 200 1.8E-18 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1464 2170942f84359f8a1cae061c5e24ee8f 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 3.0E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1464 2170942f84359f8a1cae061c5e24ee8f 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 3.0E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1464 2170942f84359f8a1cae061c5e24ee8f 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 3.0E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1464 2170942f84359f8a1cae061c5e24ee8f 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 200 5.0E-18 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1464 2170942f84359f8a1cae061c5e24ee8f 209 Gene3D G3DSA:3.40.50.12740 2 206 3.1E-55 T 14-10-2018 YP_0778 2c02dc23f046703af0ff57fe70a89f48 628 Gene3D G3DSA:1.10.4030.30 39 195 2.6E-15 T 14-10-2018 YP_0778 2c02dc23f046703af0ff57fe70a89f48 628 Pfam PF13145 PPIC-type PPIASE domain 249 370 1.2E-23 T 14-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 YP_0778 2c02dc23f046703af0ff57fe70a89f48 628 SUPERFAMILY SSF54534 225 357 3.47E-22 T 14-10-2018 YP_0778 2c02dc23f046703af0ff57fe70a89f48 628 Pfam PF13624 SurA N-terminal domain 1 166 3.8E-50 T 14-10-2018 YP_0778 2c02dc23f046703af0ff57fe70a89f48 628 SUPERFAMILY SSF109998 39 240 1.44E-33 T 14-10-2018 IPR027304 Trigger factor/SurA domain superfamily YP_0778 2c02dc23f046703af0ff57fe70a89f48 628 Gene3D G3DSA:3.10.50.40 266 364 2.6E-30 T 14-10-2018 YP_3779 cfb5d4f485b48926bf72bc239a17e9ac 135 Gene3D G3DSA:3.40.50.2300 23 135 4.6E-39 T 14-10-2018 YP_3779 cfb5d4f485b48926bf72bc239a17e9ac 135 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 27 107 6.8E-25 T 14-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 YP_3779 cfb5d4f485b48926bf72bc239a17e9ac 135 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 28 118 5.9E-16 T 14-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 YP_3779 cfb5d4f485b48926bf72bc239a17e9ac 135 SUPERFAMILY SSF52794 25 119 3.49E-28 T 14-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 YP_0258 de6e885e1e2764a228d9a33c000b2ce3 518 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 334 348 - T 14-10-2018 IPR001482 Type II/IV secretion system protein YP_0258 de6e885e1e2764a228d9a33c000b2ce3 518 Pfam PF00437 Type II/IV secretion system protein 145 406 1.3E-83 T 14-10-2018 IPR001482 Type II/IV secretion system protein YP_0258 de6e885e1e2764a228d9a33c000b2ce3 518 Gene3D G3DSA:3.40.50.300 241 512 5.8E-101 T 14-10-2018 YP_0258 de6e885e1e2764a228d9a33c000b2ce3 518 Gene3D G3DSA:3.30.450.90 108 240 2.5E-43 T 14-10-2018 YP_0258 de6e885e1e2764a228d9a33c000b2ce3 518 SUPERFAMILY SSF52540 116 508 2.46E-90 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1529 72fd037fea58b3d2916bce6e7fbdfdbb 74 Pfam PF10769 Protein of unknown function (DUF2594) 1 74 8.3E-38 T 14-10-2018 YP_0181 551f18c3921940fe25f967c1e55c4df6 352 Gene3D G3DSA:3.40.190.10 121 215 5.7E-46 T 14-10-2018 YP_0181 551f18c3921940fe25f967c1e55c4df6 352 SUPERFAMILY SSF53850 53 324 8.1E-44 T 14-10-2018 YP_0181 551f18c3921940fe25f967c1e55c4df6 352 Gene3D G3DSA:3.40.190.10 46 323 5.7E-46 T 14-10-2018 YP_0181 551f18c3921940fe25f967c1e55c4df6 352 SMART SM00062 43 257 1.2E-19 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_0181 551f18c3921940fe25f967c1e55c4df6 352 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 44 338 2.8E-131 T 14-10-2018 IPR010068 Taurine ABC transporter, substrate-binding protein TauA GO:0015734|GO:0042597 YP_0181 551f18c3921940fe25f967c1e55c4df6 352 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 43 247 1.4E-19 T 14-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 YP_0181 551f18c3921940fe25f967c1e55c4df6 352 Gene3D G3DSA:1.10.8.450 251 294 5.7E-46 T 14-10-2018 YP_1584 764d07677dd794baaab0a626a1327593 337 SUPERFAMILY SSF64518 13 335 2.75E-59 T 14-10-2018 YP_1584 764d07677dd794baaab0a626a1327593 337 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 13 209 1.2E-72 T 14-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 YP_1584 764d07677dd794baaab0a626a1327593 337 Gene3D G3DSA:1.20.1330.10 51 283 4.6E-67 T 14-10-2018 YP_1584 764d07677dd794baaab0a626a1327593 337 Pfam PF00669 Bacterial flagellin N-terminal helical region 15 150 6.3E-24 T 14-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 YP_3365 e076d1b72ef9031601a32234600dd6b5 535 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 73 453 2.6E-106 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain YP_3365 e076d1b72ef9031601a32234600dd6b5 535 Gene3D G3DSA:3.40.190.10 211 525 2.0E-196 T 14-10-2018 YP_3365 e076d1b72ef9031601a32234600dd6b5 535 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 79 101 - T 14-10-2018 IPR023765 Solute-binding protein family 5, conserved site YP_3365 e076d1b72ef9031601a32234600dd6b5 535 Gene3D G3DSA:3.90.76.10 42 210 2.0E-196 T 14-10-2018 YP_3365 e076d1b72ef9031601a32234600dd6b5 535 Gene3D G3DSA:3.10.105.10 292 510 2.0E-196 T 14-10-2018 YP_3365 e076d1b72ef9031601a32234600dd6b5 535 SUPERFAMILY SSF53850 29 534 6.52E-161 T 14-10-2018 YP_3365 e076d1b72ef9031601a32234600dd6b5 535 PIRSF PIRSF002741 23 535 2.1E-118 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 YP_0081 2b30024bdcfb8561bb78446ce0a1607a 340 Gene3D G3DSA:3.40.190.10 38 306 1.8E-138 T 14-10-2018 YP_0081 2b30024bdcfb8561bb78446ce0a1607a 340 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 25 337 7.9E-176 T 14-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 YP_0081 2b30024bdcfb8561bb78446ce0a1607a 340 Pfam PF13531 Bacterial extracellular solute-binding protein 52 291 4.6E-44 T 14-10-2018 YP_0081 2b30024bdcfb8561bb78446ce0a1607a 340 Gene3D G3DSA:3.40.190.10 125 336 1.8E-138 T 14-10-2018 YP_0081 2b30024bdcfb8561bb78446ce0a1607a 340 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 156 164 - T 14-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 YP_0081 2b30024bdcfb8561bb78446ce0a1607a 340 SUPERFAMILY SSF53850 32 337 2.21E-90 T 14-10-2018 YP_0472 3276faaca33f809025ba333c788c6f42 345 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 21 335 3.0E-162 T 14-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 YP_0472 3276faaca33f809025ba333c788c6f42 345 Gene3D G3DSA:1.20.120.1460 267 341 7.3E-22 T 14-10-2018 YP_0472 3276faaca33f809025ba333c788c6f42 345 PIRSF PIRSF006621 10 332 1.1E-71 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 YP_0472 3276faaca33f809025ba333c788c6f42 345 Pfam PF01207 Dihydrouridine synthase (Dus) 24 323 1.4E-95 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 YP_0472 3276faaca33f809025ba333c788c6f42 345 SUPERFAMILY SSF51395 21 333 8.55E-72 T 14-10-2018 YP_0472 3276faaca33f809025ba333c788c6f42 345 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 102 120 - T 14-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 YP_0472 3276faaca33f809025ba333c788c6f42 345 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 12 337 52.896 T 14-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 YP_0472 3276faaca33f809025ba333c788c6f42 345 Gene3D G3DSA:3.20.20.70 19 260 1.7E-72 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3925 c17d97aa4068eac2f9cb1c3f82556048 233 Gene3D G3DSA:3.20.20.70 1 231 6.4E-55 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3925 c17d97aa4068eac2f9cb1c3f82556048 233 SMART SM01133 9 225 7.0E-52 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YP_3925 c17d97aa4068eac2f9cb1c3f82556048 233 SUPERFAMILY SSF51569 6 226 5.76E-52 T 14-10-2018 YP_3925 c17d97aa4068eac2f9cb1c3f82556048 233 PIRSF PIRSF001357 3 229 1.4E-61 T 14-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YP_3925 c17d97aa4068eac2f9cb1c3f82556048 233 Pfam PF01791 DeoC/LacD family aldolase 47 205 4.0E-7 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YP_3925 c17d97aa4068eac2f9cb1c3f82556048 233 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 10 221 2.6E-45 T 14-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YP_1916 954e6506df7cccfd80fa026984519116 201 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 27 196 3.6E-61 T 14-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 YP_1916 954e6506df7cccfd80fa026984519116 201 Pfam PF03843 Outer membrane lipoprotein Slp family 30 174 2.4E-47 T 14-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 YP_1916 954e6506df7cccfd80fa026984519116 201 PIRSF PIRSF004982 17 197 3.9E-47 T 14-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 YP_2476 9d7f341193a4191b94b6c3e516ecd649 391 SUPERFAMILY SSF81324 114 262 1.11E-18 T 14-10-2018 YP_2476 9d7f341193a4191b94b6c3e516ecd649 391 SUPERFAMILY SSF51735 239 376 4.88E-21 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2476 9d7f341193a4191b94b6c3e516ecd649 391 Gene3D G3DSA:1.10.287.70 135 228 4.0E-13 T 14-10-2018 YP_2476 9d7f341193a4191b94b6c3e516ecd649 391 Pfam PF07885 Ion channel 141 218 7.0E-11 T 14-10-2018 IPR013099 Potassium channel domain YP_2476 9d7f341193a4191b94b6c3e516ecd649 391 Pfam PF02254 TrkA-N domain 243 356 6.2E-16 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 YP_2476 9d7f341193a4191b94b6c3e516ecd649 391 Gene3D G3DSA:3.40.50.720 238 385 2.5E-27 T 14-10-2018 YP_0292 96e383700824f095e107a6abf451aa04 831 Pfam PF00912 Transglycosylase 219 390 5.1E-55 T 14-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_0292 96e383700824f095e107a6abf451aa04 831 Gene3D G3DSA:3.40.710.10 113 771 2.7E-263 T 14-10-2018 YP_0292 96e383700824f095e107a6abf451aa04 831 Pfam PF00905 Penicillin binding protein transpeptidase domain 483 722 2.0E-20 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 YP_0292 96e383700824f095e107a6abf451aa04 831 Gene3D G3DSA:1.10.3810.10 211 414 2.7E-263 T 14-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_0292 96e383700824f095e107a6abf451aa04 831 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 78 805 0.0 T 14-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_0292 96e383700824f095e107a6abf451aa04 831 SUPERFAMILY SSF56601 372 787 1.16E-105 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YP_0292 96e383700824f095e107a6abf451aa04 831 Gene3D G3DSA:1.20.5.100 65 106 2.7E-19 T 14-10-2018 YP_0292 96e383700824f095e107a6abf451aa04 831 Gene3D G3DSA:3.30.2060.10 121 210 2.7E-263 T 14-10-2018 YP_0292 96e383700824f095e107a6abf451aa04 831 PIRSF PIRSF002799 47 831 0.0 T 14-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_0292 96e383700824f095e107a6abf451aa04 831 SUPERFAMILY SSF53955 206 413 1.63E-65 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_0292 96e383700824f095e107a6abf451aa04 831 Pfam PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal 8 88 7.8E-31 T 14-10-2018 IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain YP_0292 96e383700824f095e107a6abf451aa04 831 Pfam PF14814 Bifunctional transglycosylase second domain 123 207 1.9E-29 T 14-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_0585 e5aab86d58293b8adb51f7440fc0346c 154 SUPERFAMILY SSF75420 6 86 1.29E-24 T 14-10-2018 IPR035956 RimP, N-terminal domain superfamily YP_0585 e5aab86d58293b8adb51f7440fc0346c 154 SUPERFAMILY SSF74942 87 154 1.29E-16 T 14-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily YP_0585 e5aab86d58293b8adb51f7440fc0346c 154 Pfam PF02576 RimP N-terminal domain 15 86 2.1E-28 T 14-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal YP_0585 e5aab86d58293b8adb51f7440fc0346c 154 Pfam PF17384 RimP C-terminal SH3 domain 89 154 1.7E-22 T 14-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal YP_0585 e5aab86d58293b8adb51f7440fc0346c 154 Gene3D G3DSA:3.30.300.70 4 83 5.1E-25 T 14-10-2018 IPR035956 RimP, N-terminal domain superfamily YP_0585 e5aab86d58293b8adb51f7440fc0346c 154 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 10 154 24.064 T 14-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 YP_2372 44a16ef3b5936f6aad5033878ab89dbe 630 Pfam PF03600 Citrate transporter 450 627 1.5E-20 T 14-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 YP_2372 44a16ef3b5936f6aad5033878ab89dbe 630 SUPERFAMILY SSF116726 252 309 1.03E-9 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YP_2372 44a16ef3b5936f6aad5033878ab89dbe 630 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 578 594 - T 14-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 YP_2372 44a16ef3b5936f6aad5033878ab89dbe 630 Pfam PF02080 TrkA-C domain 251 317 1.7E-15 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YP_2372 44a16ef3b5936f6aad5033878ab89dbe 630 Pfam PF02080 TrkA-C domain 346 412 2.5E-12 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YP_2372 44a16ef3b5936f6aad5033878ab89dbe 630 Gene3D G3DSA:3.30.70.1450 343 416 1.3E-16 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YP_2372 44a16ef3b5936f6aad5033878ab89dbe 630 Gene3D G3DSA:3.30.70.1450 249 326 6.1E-13 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YP_2372 44a16ef3b5936f6aad5033878ab89dbe 630 Pfam PF03600 Citrate transporter 36 217 5.8E-37 T 14-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 YP_2372 44a16ef3b5936f6aad5033878ab89dbe 630 SUPERFAMILY SSF116726 340 412 8.5E-18 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YP_3205 8cf016f7358d53e53cf1c080e5419296 238 SUPERFAMILY SSF56784 10 238 6.59E-40 T 14-10-2018 IPR036412 HAD-like superfamily YP_3205 8cf016f7358d53e53cf1c080e5419296 238 Pfam PF00702 haloacid dehalogenase-like hydrolase 10 196 5.2E-9 T 14-10-2018 YP_3205 8cf016f7358d53e53cf1c080e5419296 238 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 119 201 5.9E-13 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_3205 8cf016f7358d53e53cf1c080e5419296 238 Gene3D G3DSA:1.20.120.1600 24 110 7.6E-61 T 14-10-2018 YP_3205 8cf016f7358d53e53cf1c080e5419296 238 Gene3D G3DSA:3.40.50.1000 12 231 7.6E-61 T 14-10-2018 IPR023214 HAD superfamily YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 Gene3D G3DSA:3.30.390.30 351 474 4.2E-43 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 PIRSF PIRSF000350 2 472 1.6E-57 T 14-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 Gene3D G3DSA:3.50.50.60 152 273 9.3E-95 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 354 463 3.2E-18 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 282 1.8E-19 T 14-10-2018 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 179 197 1.8E-19 T 14-10-2018 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 140 158 1.8E-19 T 14-10-2018 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 296 318 1.8E-19 T 14-10-2018 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.8E-19 T 14-10-2018 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 Gene3D G3DSA:3.50.50.60 7 334 9.3E-95 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 267 281 2.1E-40 T 14-10-2018 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 348 369 2.1E-40 T 14-10-2018 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 438 458 2.1E-40 T 14-10-2018 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 179 204 2.1E-40 T 14-10-2018 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 311 318 2.1E-40 T 14-10-2018 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 416 431 2.1E-40 T 14-10-2018 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.1E-40 T 14-10-2018 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 2.1E-40 T 14-10-2018 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 152 2.1E-40 T 14-10-2018 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 SUPERFAMILY SSF51905 1 370 2.26E-41 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 SUPERFAMILY SSF55424 353 471 1.72E-25 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 Gene3D G3DSA:1.10.287.990 37 107 9.3E-95 T 14-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YP_3131 41ad63b10d7cba3fa520aa67b68ff14a 487 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 331 1.1E-37 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YP_3807 b118e05bf0ab8cbbd1633aa939a231e9 217 PIRSF PIRSF006320 1 216 1.4E-99 T 14-10-2018 IPR026041 Glyoxalase ElbB YP_3807 b118e05bf0ab8cbbd1633aa939a231e9 217 Gene3D G3DSA:3.40.50.880 1 217 3.2E-90 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_3807 b118e05bf0ab8cbbd1633aa939a231e9 217 SUPERFAMILY SSF52317 1 215 5.73E-60 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_2745 cab8f99a68acec2aca27ffcdb67ded08 375 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 7 359 34.01 T 14-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 YP_2745 cab8f99a68acec2aca27ffcdb67ded08 375 SUPERFAMILY SSF56014 266 332 1.6E-10 T 14-10-2018 YP_2745 cab8f99a68acec2aca27ffcdb67ded08 375 SUPERFAMILY SSF51604 23 139 7.42E-10 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YP_2745 cab8f99a68acec2aca27ffcdb67ded08 375 Gene3D G3DSA:3.30.413.10 262 360 7.7E-22 T 14-10-2018 YP_2745 cab8f99a68acec2aca27ffcdb67ded08 375 PIRSF PIRSF004640 1 364 2.5E-145 T 14-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 YP_2745 cab8f99a68acec2aca27ffcdb67ded08 375 Pfam PF04551 GcpE protein 14 354 3.6E-129 T 14-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 YP_2745 cab8f99a68acec2aca27ffcdb67ded08 375 Gene3D G3DSA:3.20.20.20 1 261 1.4E-103 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_2745 cab8f99a68acec2aca27ffcdb67ded08 375 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 9 351 7.4E-123 T 14-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 YP_2944 4b308344c0613b413ff714e6eb49d342 126 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 102 120 - T 14-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 YP_2944 4b308344c0613b413ff714e6eb49d342 126 Pfam PF01042 Endoribonuclease L-PSP 7 124 1.7E-44 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 YP_2944 4b308344c0613b413ff714e6eb49d342 126 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 124 4.5E-50 T 14-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 YP_2944 4b308344c0613b413ff714e6eb49d342 126 SUPERFAMILY SSF55298 2 125 1.37E-44 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YP_2944 4b308344c0613b413ff714e6eb49d342 126 Gene3D G3DSA:3.30.1330.40 1 126 5.9E-50 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YP_1405 72502283a690d3213c9657be2b51a228 393 Gene3D G3DSA:1.20.1250.20 5 387 3.8E-46 T 14-10-2018 YP_1405 72502283a690d3213c9657be2b51a228 393 Pfam PF07690 Major Facilitator Superfamily 11 352 1.0E-38 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_1405 72502283a690d3213c9657be2b51a228 393 SUPERFAMILY SSF103473 11 389 1.57E-51 T 14-10-2018 IPR036259 MFS transporter superfamily YP_1440 9d0483260b9d4aa2d301f4b125d34352 275 Pfam PF01370 NAD dependent epimerase/dehydratase family 10 213 4.1E-6 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YP_1440 9d0483260b9d4aa2d301f4b125d34352 275 SUPERFAMILY SSF51735 2 267 1.94E-28 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1440 9d0483260b9d4aa2d301f4b125d34352 275 Gene3D G3DSA:3.40.50.720 1 271 4.4E-60 T 14-10-2018 YP_0703 068264c18743bf51aeb26bc7dc3f6305 486 Pfam PF01546 Peptidase family M20/M25/M40 72 480 2.1E-20 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 YP_0703 068264c18743bf51aeb26bc7dc3f6305 486 PIRSF PIRSF016599 1 485 1.1E-211 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YP_0703 068264c18743bf51aeb26bc7dc3f6305 486 Gene3D G3DSA:3.40.630.10 340 486 4.5E-24 T 14-10-2018 YP_0703 068264c18743bf51aeb26bc7dc3f6305 486 SUPERFAMILY SSF53187 10 482 2.04E-66 T 14-10-2018 YP_0703 068264c18743bf51aeb26bc7dc3f6305 486 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 8 482 3.9E-183 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YP_0703 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 159 177 9.4E-98 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YP_0703 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 80 99 9.4E-98 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YP_0703 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 251 270 9.4E-98 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YP_0703 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 135 152 9.4E-98 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YP_0703 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 206 223 9.4E-98 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YP_0703 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 450 472 9.4E-98 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YP_0703 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 363 381 9.4E-98 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YP_0703 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 428 444 9.4E-98 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YP_0703 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 101 119 9.4E-98 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YP_0703 068264c18743bf51aeb26bc7dc3f6305 486 Pfam PF07687 Peptidase dimerisation domain 200 291 1.9E-5 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain YP_0703 068264c18743bf51aeb26bc7dc3f6305 486 Gene3D G3DSA:3.40.630.10 1 235 9.7E-65 T 14-10-2018 YP_3527 a470ebf96bb16239c575091472721c65 258 SMART SM01134 74 235 4.0E-67 T 14-10-2018 YP_3527 a470ebf96bb16239c575091472721c65 258 SMART SM00420 7 59 3.4E-14 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_3527 a470ebf96bb16239c575091472721c65 258 Pfam PF00455 DeoR C terminal sensor domain 77 234 1.8E-51 T 14-10-2018 IPR014036 DeoR C-terminal sensor domain YP_3527 a470ebf96bb16239c575091472721c65 258 Gene3D G3DSA:1.10.10.10 2 58 3.3E-7 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3527 a470ebf96bb16239c575091472721c65 258 SUPERFAMILY SSF46785 6 59 1.63E-14 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3527 a470ebf96bb16239c575091472721c65 258 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 25 39 2.1E-5 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_3527 a470ebf96bb16239c575091472721c65 258 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 39 57 2.1E-5 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_3527 a470ebf96bb16239c575091472721c65 258 SUPERFAMILY SSF100950 76 237 3.63E-31 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_3527 a470ebf96bb16239c575091472721c65 258 Pfam PF08220 DeoR-like helix-turn-helix domain 7 58 8.4E-15 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_pCD66 06d689526bee780e44a4f0cf7581c1c8 132 Gene3D G3DSA:3.30.1460.10 1 132 6.1E-59 T 14-10-2018 YP_pCD66 06d689526bee780e44a4f0cf7581c1c8 132 SUPERFAMILY SSF69635 4 128 6.28E-38 T 14-10-2018 YP_pCD66 06d689526bee780e44a4f0cf7581c1c8 132 Pfam PF05932 Tir chaperone protein (CesT) family 8 112 1.5E-8 T 14-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 YP_1195 40a9b0c44340d065039fb502af281b75 77 PRINTS PR00050 Cold shock protein signature 14 29 5.8E-12 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1195 40a9b0c44340d065039fb502af281b75 77 PRINTS PR00050 Cold shock protein signature 50 68 5.8E-12 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1195 40a9b0c44340d065039fb502af281b75 77 PRINTS PR00050 Cold shock protein signature 35 44 5.8E-12 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1195 40a9b0c44340d065039fb502af281b75 77 Pfam PF00313 'Cold-shock' DNA-binding domain 14 75 4.8E-20 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1195 40a9b0c44340d065039fb502af281b75 77 PIRSF PIRSF002599 8 77 5.3E-18 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 YP_1195 40a9b0c44340d065039fb502af281b75 77 SUPERFAMILY SSF50249 7 75 8.14E-19 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_1195 40a9b0c44340d065039fb502af281b75 77 Gene3D G3DSA:2.40.50.140 13 76 8.5E-21 T 14-10-2018 YP_1195 40a9b0c44340d065039fb502af281b75 77 SMART SM00357 13 77 1.1E-12 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 YP_1234 f7ce7ff0a084511abc7051a4400a7ad2 298 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 137 296 8.0E-68 T 14-10-2018 IPR005642 Lysine exporter LysO YP_1234 f7ce7ff0a084511abc7051a4400a7ad2 298 Pfam PF03956 Lysine exporter LysO 113 297 4.1E-56 T 14-10-2018 IPR005642 Lysine exporter LysO YP_3382 91a2b4db175d6348f29b431b93a671d8 188 Pfam PF00156 Phosphoribosyl transferase domain 35 152 5.5E-9 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 YP_3382 91a2b4db175d6348f29b431b93a671d8 188 SUPERFAMILY SSF53271 34 176 2.62E-24 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like YP_3382 91a2b4db175d6348f29b431b93a671d8 188 Gene3D G3DSA:3.40.50.2020 3 181 1.2E-30 T 14-10-2018 YP_1050 6574c11a96fda49b184af57141908999 255 Gene3D G3DSA:3.40.50.10330 1 250 2.6E-95 T 14-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 YP_1050 6574c11a96fda49b184af57141908999 255 Hamap MF_00361 NAD kinase [nadK]. 4 250 31.103 T 14-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 YP_1050 6574c11a96fda49b184af57141908999 255 Gene3D G3DSA:2.60.200.30 91 227 2.6E-95 T 14-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 YP_1050 6574c11a96fda49b184af57141908999 255 SUPERFAMILY SSF111331 15 252 2.62E-87 T 14-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily YP_1050 6574c11a96fda49b184af57141908999 255 Pfam PF01513 ATP-NAD kinase 19 234 1.8E-71 T 14-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 YP_3116 61a6a4e390449c487ec4aa7bb44edf15 132 Hamap MF_00422 Protein translocase subunit SecE [secE]. 72 126 13.188 T 14-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YP_3116 61a6a4e390449c487ec4aa7bb44edf15 132 PRINTS PR01650 Bacterial translocase SecE signature 94 114 2.0E-38 T 14-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 YP_3116 61a6a4e390449c487ec4aa7bb44edf15 132 PRINTS PR01650 Bacterial translocase SecE signature 114 130 2.0E-38 T 14-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 YP_3116 61a6a4e390449c487ec4aa7bb44edf15 132 PRINTS PR01650 Bacterial translocase SecE signature 70 90 2.0E-38 T 14-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 YP_3116 61a6a4e390449c487ec4aa7bb44edf15 132 PRINTS PR01650 Bacterial translocase SecE signature 49 70 2.0E-38 T 14-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 YP_3116 61a6a4e390449c487ec4aa7bb44edf15 132 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 74 128 4.5E-17 T 14-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 YP_3116 61a6a4e390449c487ec4aa7bb44edf15 132 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 75 127 4.3E-20 T 14-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YP_3116 61a6a4e390449c487ec4aa7bb44edf15 132 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 76 104 - T 14-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YP_3116 61a6a4e390449c487ec4aa7bb44edf15 132 Gene3D G3DSA:1.20.5.1030 71 128 5.4E-16 T 14-10-2018 IPR038379 SecE superfamily YP_1962 7cbd91104e126ee2c7660a69ae5bdde4 616 PIRSF PIRSF001217 8 616 7.7E-214 T 14-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 YP_1962 7cbd91104e126ee2c7660a69ae5bdde4 616 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 16 607 7.3E-221 T 14-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 YP_1962 7cbd91104e126ee2c7660a69ae5bdde4 616 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 326 539 9.6E-51 T 14-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 YP_1962 7cbd91104e126ee2c7660a69ae5bdde4 616 Gene3D G3DSA:3.90.226.10 95 316 4.0E-163 T 14-10-2018 YP_1962 7cbd91104e126ee2c7660a69ae5bdde4 616 SUPERFAMILY SSF52096 316 528 1.3E-40 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YP_1962 7cbd91104e126ee2c7660a69ae5bdde4 616 Gene3D G3DSA:3.40.1750.10 187 496 4.0E-163 T 14-10-2018 YP_1962 7cbd91104e126ee2c7660a69ae5bdde4 616 Pfam PF01343 Peptidase family S49 390 541 1.5E-47 T 14-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 YP_1962 7cbd91104e126ee2c7660a69ae5bdde4 616 Pfam PF01343 Peptidase family S49 139 287 3.7E-35 T 14-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 YP_1962 7cbd91104e126ee2c7660a69ae5bdde4 616 SUPERFAMILY SSF52096 34 284 1.03E-26 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YP_1962 7cbd91104e126ee2c7660a69ae5bdde4 616 Gene3D G3DSA:3.90.226.10 317 539 4.0E-163 T 14-10-2018 YP_0712 a7401cccbbb77a35766ee78b54dc42ad 419 Gene3D G3DSA:3.40.309.10 224 376 8.1E-160 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YP_0712 a7401cccbbb77a35766ee78b54dc42ad 419 PIRSF PIRSF000151 1 419 2.0E-170 T 14-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 YP_0712 a7401cccbbb77a35766ee78b54dc42ad 419 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 3 418 40.686 T 14-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 YP_0712 a7401cccbbb77a35766ee78b54dc42ad 419 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 11 408 2.4E-184 T 14-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 YP_0712 a7401cccbbb77a35766ee78b54dc42ad 419 Gene3D G3DSA:3.40.605.10 16 413 8.1E-160 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YP_0712 a7401cccbbb77a35766ee78b54dc42ad 419 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 325 346 - T 14-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 YP_0712 a7401cccbbb77a35766ee78b54dc42ad 419 Pfam PF00171 Aldehyde dehydrogenase family 6 282 2.6E-13 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YP_0712 a7401cccbbb77a35766ee78b54dc42ad 419 SUPERFAMILY SSF53720 4 414 7.33E-111 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YP_1230 16029a88e514091d4bb802b63972e1bd 342 Gene3D G3DSA:2.40.50.100 32 194 3.6E-87 T 14-10-2018 YP_1230 16029a88e514091d4bb802b63972e1bd 342 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 10 335 6.7E-60 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YP_1230 16029a88e514091d4bb802b63972e1bd 342 Gene3D G3DSA:1.10.287.470 66 157 3.6E-87 T 14-10-2018 YP_1230 16029a88e514091d4bb802b63972e1bd 342 Gene3D G3DSA:2.40.30.170 21 273 3.6E-87 T 14-10-2018 YP_1230 16029a88e514091d4bb802b63972e1bd 342 Gene3D G3DSA:2.40.420.20 17 334 3.6E-87 T 14-10-2018 YP_1230 16029a88e514091d4bb802b63972e1bd 342 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 21 266 2.0E-22 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_1230 16029a88e514091d4bb802b63972e1bd 342 SUPERFAMILY SSF111369 24 270 1.09E-29 T 14-10-2018 YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 253 265 - T 14-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 Gene3D G3DSA:1.20.5.320 436 469 4.0E-22 T 14-10-2018 YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 PIRSF PIRSF000109 1 469 2.7E-241 T 14-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 468 4.3E-228 T 14-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 174 5.9E-51 T 14-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 179 467 2.6E-134 T 14-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 Gene3D G3DSA:1.10.1040.10 181 435 9.3E-112 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 357 379 3.4E-89 T 14-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 3.4E-89 T 14-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 249 276 3.4E-89 T 14-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 3.4E-89 T 14-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 168 196 3.4E-89 T 14-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 3.4E-89 T 14-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 Gene3D G3DSA:3.40.50.720 1 180 5.4E-56 T 14-10-2018 YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 SMART SM01350 179 468 1.7E-224 T 14-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 SUPERFAMILY SSF51735 4 172 2.31E-50 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1430 aeebc581dcf9da9115a9a53c5f14e743 469 SUPERFAMILY SSF48179 177 468 9.78E-133 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 Pfam PF04539 Sigma-70 region 3 176 250 2.5E-20 T 14-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 Gene3D G3DSA:1.10.601.10 85 168 3.5E-46 T 14-10-2018 YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 Pfam PF00140 Sigma-70 factor, region 1.2 58 89 4.1E-11 T 14-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 Pfam PF04545 Sigma-70, region 4 264 317 2.7E-15 T 14-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 12 330 39.966 T 14-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 289 315 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 Gene3D G3DSA:1.10.10.10 169 244 5.7E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 SUPERFAMILY SSF88659 169 243 8.72E-15 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 Gene3D G3DSA:1.10.10.10 246 322 1.0E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 SUPERFAMILY SSF88946 58 166 1.02E-45 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 PRINTS PR00046 Major sigma-70 factor signature 268 280 2.5E-27 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 PRINTS PR00046 Major sigma-70 factor signature 304 315 2.5E-27 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 PRINTS PR00046 Major sigma-70 factor signature 289 304 2.5E-27 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 PRINTS PR00046 Major sigma-70 factor signature 120 133 2.5E-27 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 PRINTS PR00046 Major sigma-70 factor signature 144 152 2.5E-27 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 50 330 2.5E-144 T 14-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 120 133 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 Pfam PF04542 Sigma-70 region 2 96 165 3.2E-21 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 SUPERFAMILY SSF88659 227 324 1.68E-23 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_0332 3e56cced982c8eef3f2c214c3f11d5ce 332 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 92 319 2.7E-35 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 YP_0055 313f5f33950eb94c233d28f942ee6ed8 260 SUPERFAMILY SSF53448 3 150 1.59E-27 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_0055 313f5f33950eb94c233d28f942ee6ed8 260 Gene3D G3DSA:3.90.550.10 2 200 2.5E-26 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_0055 313f5f33950eb94c233d28f942ee6ed8 260 Pfam PF00535 Glycosyl transferase family 2 8 132 5.6E-19 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 YP_pCD46 ba3e267cf040bcaa072c10bd2f9a3f74 123 TIGRFAM TIGR02503 type_III_SycN: type III secretion chaperone SycN 4 122 1.9E-48 T 14-10-2018 IPR012673 Type III secretion system chaperone SycN GO:0009306 YP_pCD46 ba3e267cf040bcaa072c10bd2f9a3f74 123 SUPERFAMILY SSF69635 2 122 7.22E-44 T 14-10-2018 YP_pCD46 ba3e267cf040bcaa072c10bd2f9a3f74 123 Gene3D G3DSA:3.30.1460.10 1 123 9.0E-55 T 14-10-2018 YP_pPCP09 36987d3d383a56e1cd2f5b38d343a272 99 Pfam PF13744 Helix-turn-helix domain 12 88 3.6E-15 T 14-10-2018 IPR039554 HigA2-like, helix-turn-helix domain YP_pPCP09 36987d3d383a56e1cd2f5b38d343a272 99 Gene3D G3DSA:1.10.260.40 5 88 5.5E-13 T 14-10-2018 YP_pPCP09 36987d3d383a56e1cd2f5b38d343a272 99 SUPERFAMILY SSF47413 19 92 1.37E-16 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_pPCP09 36987d3d383a56e1cd2f5b38d343a272 99 SMART SM00530 31 86 1.1E-8 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_2035 fa5a58e530ad11ab0004f1af96dd2435 436 Pfam PF07690 Major Facilitator Superfamily 33 395 1.3E-47 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_2035 fa5a58e530ad11ab0004f1af96dd2435 436 SUPERFAMILY SSF103473 16 430 9.68E-89 T 14-10-2018 IPR036259 MFS transporter superfamily YP_2035 fa5a58e530ad11ab0004f1af96dd2435 436 Gene3D G3DSA:1.20.1250.20 10 434 2.6E-87 T 14-10-2018 YP_2837 1e4a882dc734941665e657ee718f0417 251 SUPERFAMILY SSF53056 42 250 2.09E-53 T 14-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 YP_2837 1e4a882dc734941665e657ee718f0417 251 Gene3D G3DSA:3.40.1050.10 47 251 4.4E-55 T 14-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 YP_2837 1e4a882dc734941665e657ee718f0417 251 SMART SM00947 91 251 7.5E-43 T 14-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 YP_2837 1e4a882dc734941665e657ee718f0417 251 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 16 44 7.5E-4 T 14-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YP_2837 1e4a882dc734941665e657ee718f0417 251 Pfam PF00484 Carbonic anhydrase 98 247 2.0E-35 T 14-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 YP_0380 d08a5374d6263e7d0df7e51e83c9c83b 187 Pfam PF02631 RecX family 72 183 1.1E-31 T 14-10-2018 IPR003783 Regulatory protein RecX GO:0006282 YP_0380 d08a5374d6263e7d0df7e51e83c9c83b 187 Gene3D G3DSA:1.10.10.10 2 90 5.8E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0380 d08a5374d6263e7d0df7e51e83c9c83b 187 Hamap MF_01114 Regulatory protein RecX [recX]. 2 187 15.055 T 14-10-2018 IPR003783 Regulatory protein RecX GO:0006282 YP_0380 d08a5374d6263e7d0df7e51e83c9c83b 187 Gene3D G3DSA:1.10.10.10 137 186 1.0E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0380 d08a5374d6263e7d0df7e51e83c9c83b 187 Gene3D G3DSA:1.10.10.10 91 135 2.2E-16 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_pCD72 c91b7cc657cbc9ff5b582e2315abaeb2 152 SUPERFAMILY SSF53098 95 152 6.07E-10 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_pCD72 c91b7cc657cbc9ff5b582e2315abaeb2 152 Pfam PF13276 HTH-like domain 28 78 1.1E-6 T 14-10-2018 IPR025948 HTH-like domain YP_2713 5c68747981761483e63ad64957866ace 364 Pfam PF08402 TOBE domain 283 359 2.7E-16 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YP_2713 5c68747981761483e63ad64957866ace 364 Gene3D G3DSA:3.40.50.300 7 226 4.8E-66 T 14-10-2018 YP_2713 5c68747981761483e63ad64957866ace 364 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2713 5c68747981761483e63ad64957866ace 364 Gene3D G3DSA:2.40.50.140 290 351 2.5E-10 T 14-10-2018 YP_2713 5c68747981761483e63ad64957866ace 364 SUPERFAMILY SSF50331 241 358 3.34E-13 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YP_2713 5c68747981761483e63ad64957866ace 364 SUPERFAMILY SSF52540 8 245 2.59E-85 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2713 5c68747981761483e63ad64957866ace 364 SMART SM00382 33 215 1.2E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2713 5c68747981761483e63ad64957866ace 364 Pfam PF00005 ABC transporter 24 166 9.0E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2713 5c68747981761483e63ad64957866ace 364 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 39 356 1.7E-110 T 14-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 YP_2713 5c68747981761483e63ad64957866ace 364 Gene3D G3DSA:2.40.50.940 227 354 2.5E-10 T 14-10-2018 YP_3723 2cc4df40728fd4cf6b07802170f663be 817 SUPERFAMILY SSF55347 612 795 2.55E-53 T 14-10-2018 YP_3723 2cc4df40728fd4cf6b07802170f663be 817 Gene3D G3DSA:3.30.360.10 623 793 2.1E-121 T 14-10-2018 YP_3723 2cc4df40728fd4cf6b07802170f663be 817 Gene3D G3DSA:3.30.2130.10 299 462 1.9E-48 T 14-10-2018 YP_3723 2cc4df40728fd4cf6b07802170f663be 817 SUPERFAMILY SSF55021 381 474 3.45E-22 T 14-10-2018 YP_3723 2cc4df40728fd4cf6b07802170f663be 817 Pfam PF13840 ACT domain 393 451 6.7E-8 T 14-10-2018 IPR027795 CASTOR, ACT domain YP_3723 2cc4df40728fd4cf6b07802170f663be 817 SUPERFAMILY SSF55021 301 379 5.88E-23 T 14-10-2018 YP_3723 2cc4df40728fd4cf6b07802170f663be 817 Pfam PF00696 Amino acid kinase family 1 282 3.4E-46 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 YP_3723 2cc4df40728fd4cf6b07802170f663be 817 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 1 458 3.0E-143 T 14-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YP_3723 2cc4df40728fd4cf6b07802170f663be 817 SUPERFAMILY SSF53633 1 295 4.89E-72 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YP_3723 2cc4df40728fd4cf6b07802170f663be 817 PIRSF PIRSF000727 1 815 0.0 T 14-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YP_3723 2cc4df40728fd4cf6b07802170f663be 817 Pfam PF01842 ACT domain 322 373 4.1E-8 T 14-10-2018 IPR002912 ACT domain YP_3723 2cc4df40728fd4cf6b07802170f663be 817 Gene3D G3DSA:3.40.1160.10 1 295 1.5E-84 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YP_3723 2cc4df40728fd4cf6b07802170f663be 817 ProSitePatterns PS00324 Aspartokinase signature. 1 9 - T 14-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YP_3723 2cc4df40728fd4cf6b07802170f663be 817 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 658 680 - T 14-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 YP_3723 2cc4df40728fd4cf6b07802170f663be 817 Gene3D G3DSA:3.40.50.720 464 809 2.1E-121 T 14-10-2018 YP_3723 2cc4df40728fd4cf6b07802170f663be 817 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 470 603 4.0E-28 T 14-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 YP_3723 2cc4df40728fd4cf6b07802170f663be 817 SUPERFAMILY SSF51735 462 634 1.89E-38 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3723 2cc4df40728fd4cf6b07802170f663be 817 Pfam PF00742 Homoserine dehydrogenase 612 808 2.2E-50 T 14-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 YP_0447 e604c346a7af70b73720e9813384127d 319 Gene3D G3DSA:3.20.20.60 3 300 5.3E-18 T 14-10-2018 YP_0447 e604c346a7af70b73720e9813384127d 319 SUPERFAMILY SSF51621 8 250 4.6E-29 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YP_0447 e604c346a7af70b73720e9813384127d 319 PIRSF PIRSF015582 1 310 3.6E-66 T 14-10-2018 IPR011206 Citrate lyase beta subunit-like YP_0447 e604c346a7af70b73720e9813384127d 319 Pfam PF15617 C-C_Bond_Lyase of the TIM-Barrel fold 6 300 4.5E-107 T 14-10-2018 IPR039480 C-C bond lyase-like YP_0921 b7cb8836cfdf7c16023c3a0534bb4508 891 SMART SM00434 11 499 1.2E-300 T 14-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YP_0921 b7cb8836cfdf7c16023c3a0534bb4508 891 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 840 0.0 T 14-10-2018 YP_0921 b7cb8836cfdf7c16023c3a0534bb4508 891 SUPERFAMILY SSF56719 30 521 8.89E-183 T 14-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 YP_0921 b7cb8836cfdf7c16023c3a0534bb4508 891 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 841 24.685 T 14-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YP_0921 b7cb8836cfdf7c16023c3a0534bb4508 891 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 743 789 9.0E-15 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 YP_0921 b7cb8836cfdf7c16023c3a0534bb4508 891 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 693 737 1.0E-14 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 YP_0921 b7cb8836cfdf7c16023c3a0534bb4508 891 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 793 839 3.7E-13 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 YP_0921 b7cb8836cfdf7c16023c3a0534bb4508 891 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 688 1.9E-8 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 YP_0921 b7cb8836cfdf7c16023c3a0534bb4508 891 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 588 637 5.8E-11 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 YP_0921 b7cb8836cfdf7c16023c3a0534bb4508 891 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 538 584 2.4E-10 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 YP_0921 b7cb8836cfdf7c16023c3a0534bb4508 891 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 506 2.8E-152 T 14-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YP_0921 b7cb8836cfdf7c16023c3a0534bb4508 891 Gene3D G3DSA:2.120.10.90 535 841 2.8E-131 T 14-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YP_0921 b7cb8836cfdf7c16023c3a0534bb4508 891 SUPERFAMILY SSF101904 533 848 3.66E-114 T 14-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YP_0921 b7cb8836cfdf7c16023c3a0534bb4508 891 Gene3D G3DSA:3.90.199.10 33 521 9.7E-235 T 14-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 YP_0921 b7cb8836cfdf7c16023c3a0534bb4508 891 Gene3D G3DSA:3.30.1360.40 236 333 9.7E-235 T 14-10-2018 YP_0921 b7cb8836cfdf7c16023c3a0534bb4508 891 Gene3D G3DSA:1.10.268.10 370 493 9.7E-235 T 14-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 YP_pMT015 60d9277e47aa55fb9483995c23a6e7c9 248 Gene3D G3DSA:2.60.40.1080 162 246 1.1E-21 T 14-10-2018 YP_pMT015 60d9277e47aa55fb9483995c23a6e7c9 248 SMART SM00635 164 241 6.5E-23 T 14-10-2018 IPR003343 Bacterial Ig-like, group 2 YP_pMT015 60d9277e47aa55fb9483995c23a6e7c9 248 Pfam PF02368 Bacterial Ig-like domain (group 2) 164 242 1.7E-25 T 14-10-2018 IPR003343 Bacterial Ig-like, group 2 YP_pMT015 60d9277e47aa55fb9483995c23a6e7c9 248 SUPERFAMILY SSF49373 164 244 3.84E-14 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_pCD74 bc80aefdcb47cff7a19b946e6b756542 372 Gene3D G3DSA:3.40.50.300 89 368 9.1E-51 T 14-10-2018 YP_pCD74 bc80aefdcb47cff7a19b946e6b756542 372 Pfam PF13614 AAA domain 92 269 1.8E-27 T 14-10-2018 IPR025669 AAA domain YP_pCD74 bc80aefdcb47cff7a19b946e6b756542 372 Gene3D G3DSA:1.10.1660.10 15 81 4.5E-7 T 14-10-2018 YP_pCD74 bc80aefdcb47cff7a19b946e6b756542 372 SUPERFAMILY SSF52540 87 334 1.12E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pCD74 bc80aefdcb47cff7a19b946e6b756542 372 Pfam PF00376 MerR family regulatory protein 25 53 5.4E-9 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YP_pCD74 bc80aefdcb47cff7a19b946e6b756542 372 SUPERFAMILY SSF46955 24 77 1.92E-7 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily YP_2768 7450947fe154a02532eb73441684f18f 154 SUPERFAMILY SSF53098 3 143 2.02E-58 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_2768 7450947fe154a02532eb73441684f18f 154 Hamap MF_00042 Ribonuclease H [rnhA]. 2 149 38.32 T 14-10-2018 IPR022892 Ribonuclease HI GO:0004523 YP_2768 7450947fe154a02532eb73441684f18f 154 Pfam PF00075 RNase H 3 141 2.6E-53 T 14-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 YP_2768 7450947fe154a02532eb73441684f18f 154 Gene3D G3DSA:3.30.420.10 1 154 1.8E-60 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_0021 f8a5ce43d61b02896d15f83becd20f93 188 Hamap MF_01058 Der GTPase-activating protein YihI [yihI]. 1 182 17.434 T 14-10-2018 IPR007336 Der GTPase activator GO:0005096 YP_0021 f8a5ce43d61b02896d15f83becd20f93 188 Pfam PF04220 Der GTPase activator (YihI) 20 179 1.1E-56 T 14-10-2018 IPR007336 Der GTPase activator GO:0005096 YP_3094 be09dc7492f443309dfbef4f621ad7b5 91 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 14-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 YP_3094 be09dc7492f443309dfbef4f621ad7b5 91 Gene3D G3DSA:4.10.520.10 1 90 6.7E-37 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YP_3094 be09dc7492f443309dfbef4f621ad7b5 91 Pfam PF00216 Bacterial DNA-binding protein 1 90 2.3E-32 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_3094 be09dc7492f443309dfbef4f621ad7b5 91 SMART SM00411 1 90 6.3E-44 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_3094 be09dc7492f443309dfbef4f621ad7b5 91 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.6E-19 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_3094 be09dc7492f443309dfbef4f621ad7b5 91 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.6E-19 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_3094 be09dc7492f443309dfbef4f621ad7b5 91 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.6E-19 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_3094 be09dc7492f443309dfbef4f621ad7b5 91 SUPERFAMILY SSF47729 1 90 1.15E-32 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YP_2635 c3a051e65a0d1fbc2af5afe7d594b5d6 292 Gene3D G3DSA:3.40.50.1100 35 140 8.3E-114 T 14-10-2018 YP_2635 c3a051e65a0d1fbc2af5afe7d594b5d6 292 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 6 281 4.2E-66 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YP_2635 c3a051e65a0d1fbc2af5afe7d594b5d6 292 Gene3D G3DSA:3.40.50.1100 8 288 8.3E-114 T 14-10-2018 YP_2635 c3a051e65a0d1fbc2af5afe7d594b5d6 292 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 30 48 - T 14-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 YP_2635 c3a051e65a0d1fbc2af5afe7d594b5d6 292 TIGRFAM TIGR01136 cysKM: cysteine synthase 5 292 4.5E-123 T 14-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 YP_2635 c3a051e65a0d1fbc2af5afe7d594b5d6 292 SUPERFAMILY SSF53686 4 289 3.8E-92 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_2635 c3a051e65a0d1fbc2af5afe7d594b5d6 292 TIGRFAM TIGR01138 cysM: cysteine synthase B 3 292 4.7E-150 T 14-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 YP_1790 5664c37b2c71f0fa8f24eff136f95a34 236 Gene3D G3DSA:3.30.70.260 144 234 2.3E-13 T 14-10-2018 YP_1790 5664c37b2c71f0fa8f24eff136f95a34 236 Pfam PF02308 MgtC family 14 133 7.0E-38 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YP_1790 5664c37b2c71f0fa8f24eff136f95a34 236 PRINTS PR01837 MgtC/SapB protein signature 61 83 5.0E-47 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YP_1790 5664c37b2c71f0fa8f24eff136f95a34 236 PRINTS PR01837 MgtC/SapB protein signature 36 54 5.0E-47 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YP_1790 5664c37b2c71f0fa8f24eff136f95a34 236 PRINTS PR01837 MgtC/SapB protein signature 88 112 5.0E-47 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YP_1790 5664c37b2c71f0fa8f24eff136f95a34 236 PRINTS PR01837 MgtC/SapB protein signature 17 36 5.0E-47 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YP_1860 6ea173bd679e4c8409a08dfc97cd0ebe 90 Pfam PF10762 Protein of unknown function (DUF2583) 1 87 2.1E-45 T 14-10-2018 IPR019698 Protein of unknown function DUF2583 YP_2279 1d8d40d614e3488fb09fdc70cb24f0af 167 SUPERFAMILY SSF54211 1 164 4.02E-56 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_2279 1d8d40d614e3488fb09fdc70cb24f0af 167 TIGRFAM TIGR03126 one_C_fae: formaldehyde-activating enzyme 3 156 3.6E-42 T 14-10-2018 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|MetaCyc: PWY-7796 YP_2279 1d8d40d614e3488fb09fdc70cb24f0af 167 Gene3D G3DSA:3.30.230.60 1 165 1.2E-56 T 14-10-2018 IPR037075 Formaldehyde-activating enzyme superfamily GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|MetaCyc: PWY-7796 YP_2279 1d8d40d614e3488fb09fdc70cb24f0af 167 Pfam PF08714 Formaldehyde-activating enzyme (Fae) 5 162 3.6E-55 T 14-10-2018 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|MetaCyc: PWY-7796 YP_pCRY09 58309b03867ec1980b852837880ac10a 894 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 2 61 2.2E-5 T 14-10-2018 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB YP_pCRY09 58309b03867ec1980b852837880ac10a 894 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 251 452 2.2E-43 T 14-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 YP_pCRY09 58309b03867ec1980b852837880ac10a 894 SUPERFAMILY SSF52540 459 816 1.24E-29 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1669 f2bb51f82500d5861a75abc9eb3341cc 216 Gene3D G3DSA:3.10.129.10 55 206 5.2E-49 T 14-10-2018 YP_1669 f2bb51f82500d5861a75abc9eb3341cc 216 SUPERFAMILY SSF54637 57 208 6.36E-46 T 14-10-2018 IPR029069 HotDog domain superfamily YP_1669 f2bb51f82500d5861a75abc9eb3341cc 216 Pfam PF01575 MaoC like domain 69 181 3.2E-18 T 14-10-2018 IPR002539 MaoC-like dehydratase domain YP_3340 7de66441b9bc3ea470856875955af8a6 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 16 38 2.0E-66 T 14-10-2018 YP_3340 7de66441b9bc3ea470856875955af8a6 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 345 366 2.0E-66 T 14-10-2018 YP_3340 7de66441b9bc3ea470856875955af8a6 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 2.0E-66 T 14-10-2018 YP_3340 7de66441b9bc3ea470856875955af8a6 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 434 454 2.0E-66 T 14-10-2018 YP_3340 7de66441b9bc3ea470856875955af8a6 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 48 63 2.0E-66 T 14-10-2018 YP_3340 7de66441b9bc3ea470856875955af8a6 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 179 204 2.0E-66 T 14-10-2018 YP_3340 7de66441b9bc3ea470856875955af8a6 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 145 154 2.0E-66 T 14-10-2018 YP_3340 7de66441b9bc3ea470856875955af8a6 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 265 279 2.0E-66 T 14-10-2018 YP_3340 7de66441b9bc3ea470856875955af8a6 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 412 427 2.0E-66 T 14-10-2018 YP_3340 7de66441b9bc3ea470856875955af8a6 460 Gene3D G3DSA:3.30.390.30 348 460 2.0E-48 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YP_3340 7de66441b9bc3ea470856875955af8a6 460 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 49 59 - T 14-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 YP_3340 7de66441b9bc3ea470856875955af8a6 460 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 349 459 1.9E-34 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 YP_3340 7de66441b9bc3ea470856875955af8a6 460 Gene3D G3DSA:3.50.50.60 154 271 2.6E-125 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3340 7de66441b9bc3ea470856875955af8a6 460 SUPERFAMILY SSF51905 9 375 3.5E-60 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3340 7de66441b9bc3ea470856875955af8a6 460 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 16 328 3.7E-69 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YP_3340 7de66441b9bc3ea470856875955af8a6 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 280 5.2E-29 T 14-10-2018 YP_3340 7de66441b9bc3ea470856875955af8a6 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 179 197 5.2E-29 T 14-10-2018 YP_3340 7de66441b9bc3ea470856875955af8a6 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 17 36 5.2E-29 T 14-10-2018 YP_3340 7de66441b9bc3ea470856875955af8a6 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 5.2E-29 T 14-10-2018 YP_3340 7de66441b9bc3ea470856875955af8a6 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 142 160 5.2E-29 T 14-10-2018 YP_3340 7de66441b9bc3ea470856875955af8a6 460 Gene3D G3DSA:3.50.50.60 15 328 2.6E-125 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3340 7de66441b9bc3ea470856875955af8a6 460 PIRSF PIRSF000350 4 457 8.7E-86 T 14-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 YP_3340 7de66441b9bc3ea470856875955af8a6 460 SUPERFAMILY SSF55424 346 460 5.33E-36 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YP_3340 7de66441b9bc3ea470856875955af8a6 460 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 13 460 5.4E-218 T 14-10-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 YP_0377 c8d644c7373993f66c8ee56778a62243 446 Gene3D G3DSA:1.20.1250.20 5 184 8.3E-11 T 14-10-2018 YP_0377 c8d644c7373993f66c8ee56778a62243 446 Pfam PF07690 Major Facilitator Superfamily 12 286 8.5E-18 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_0377 c8d644c7373993f66c8ee56778a62243 446 SUPERFAMILY SSF103473 6 370 5.62E-39 T 14-10-2018 IPR036259 MFS transporter superfamily YP_0377 c8d644c7373993f66c8ee56778a62243 446 Gene3D G3DSA:1.20.1250.20 200 380 7.8E-19 T 14-10-2018 YP_1917 4119df2440fa941f9e69157dadbce73e 579 Pfam PF00501 AMP-binding enzyme 46 477 5.8E-107 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YP_1917 4119df2440fa941f9e69157dadbce73e 579 Gene3D G3DSA:3.30.300.310 473 575 1.3E-31 T 14-10-2018 YP_1917 4119df2440fa941f9e69157dadbce73e 579 Gene3D G3DSA:3.40.50.12780 29 468 3.4E-115 T 14-10-2018 YP_1917 4119df2440fa941f9e69157dadbce73e 579 ProSitePatterns PS00455 Putative AMP-binding domain signature. 228 239 - T 14-10-2018 IPR020845 AMP-binding, conserved site YP_1917 4119df2440fa941f9e69157dadbce73e 579 Pfam PF13193 AMP-binding enzyme C-terminal domain 486 560 1.3E-17 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain YP_1917 4119df2440fa941f9e69157dadbce73e 579 SUPERFAMILY SSF56801 31 571 9.68E-148 T 14-10-2018 YP_3885 d2e3807b2d845f4eafc88e5824f400b3 206 Pfam PF01794 Ferric reductase like transmembrane component 48 161 1.6E-16 T 14-10-2018 IPR013130 Ferric reductase transmembrane component-like domain YP_3885 d2e3807b2d845f4eafc88e5824f400b3 206 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 5 204 21.654 T 14-10-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 YP_1900 8cf08b48e697d0a927c43fcfc5467907 226 SUPERFAMILY SSF50249 24 85 1.14E-17 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_1900 8cf08b48e697d0a927c43fcfc5467907 226 Gene3D G3DSA:1.10.150.20 89 164 3.3E-30 T 14-10-2018 YP_1900 8cf08b48e697d0a927c43fcfc5467907 226 SUPERFAMILY SSF46929 181 224 6.41E-10 T 14-10-2018 IPR036267 RuvA, C-terminal domain superfamily YP_1900 8cf08b48e697d0a927c43fcfc5467907 226 Pfam PF07499 RuvA, C-terminal domain 183 224 1.1E-13 T 14-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 YP_1900 8cf08b48e697d0a927c43fcfc5467907 226 Pfam PF01330 RuvA N terminal domain 24 84 5.4E-18 T 14-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 YP_1900 8cf08b48e697d0a927c43fcfc5467907 226 Pfam PF14520 Helix-hairpin-helix domain 94 152 1.9E-17 T 14-10-2018 YP_1900 8cf08b48e697d0a927c43fcfc5467907 226 SUPERFAMILY SSF47781 88 158 8.62E-23 T 14-10-2018 IPR010994 RuvA domain 2-like YP_1900 8cf08b48e697d0a927c43fcfc5467907 226 Gene3D G3DSA:2.40.50.140 23 88 7.9E-26 T 14-10-2018 YP_1900 8cf08b48e697d0a927c43fcfc5467907 226 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 23 226 4.4E-67 T 14-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 YP_1900 8cf08b48e697d0a927c43fcfc5467907 226 SMART SM00278 95 114 0.054 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 YP_1900 8cf08b48e697d0a927c43fcfc5467907 226 SMART SM00278 130 149 0.15 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 YP_1900 8cf08b48e697d0a927c43fcfc5467907 226 Gene3D G3DSA:1.10.8.10 179 226 8.9E-23 T 14-10-2018 YP_1900 8cf08b48e697d0a927c43fcfc5467907 226 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 23 226 32.583 T 14-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 YP_3401 179954e783818e4ca9b32eccfc02f2e1 484 SUPERFAMILY SSF53067 242 482 1.02E-63 T 14-10-2018 YP_3401 179954e783818e4ca9b32eccfc02f2e1 484 TIGRFAM TIGR01312 XylB: xylulokinase 3 477 2.0E-184 T 14-10-2018 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 YP_3401 179954e783818e4ca9b32eccfc02f2e1 484 PIRSF PIRSF000538 1 484 7.4E-137 T 14-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YP_3401 179954e783818e4ca9b32eccfc02f2e1 484 Gene3D G3DSA:3.30.420.40 242 483 4.5E-91 T 14-10-2018 YP_3401 179954e783818e4ca9b32eccfc02f2e1 484 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 249 436 5.0E-30 T 14-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YP_3401 179954e783818e4ca9b32eccfc02f2e1 484 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 1 240 1.5E-83 T 14-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YP_3401 179954e783818e4ca9b32eccfc02f2e1 484 Gene3D G3DSA:3.30.420.40 1 241 1.9E-92 T 14-10-2018 YP_3401 179954e783818e4ca9b32eccfc02f2e1 484 SUPERFAMILY SSF53067 2 242 2.68E-73 T 14-10-2018 YP_3401 179954e783818e4ca9b32eccfc02f2e1 484 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 126 138 - T 14-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YP_1630 cb26528e7c217c38bb893fda80403228 465 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 243 250 - T 14-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 YP_1630 cb26528e7c217c38bb893fda80403228 465 Gene3D G3DSA:3.40.309.10 249 400 2.8E-140 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YP_1630 cb26528e7c217c38bb893fda80403228 465 Gene3D G3DSA:3.40.309.10 401 422 1.4E-13 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YP_1630 cb26528e7c217c38bb893fda80403228 465 SUPERFAMILY SSF53720 3 457 9.42E-151 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YP_1630 cb26528e7c217c38bb893fda80403228 465 Gene3D G3DSA:3.40.605.10 19 248 2.8E-140 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YP_1630 cb26528e7c217c38bb893fda80403228 465 Gene3D G3DSA:3.40.605.10 423 451 1.4E-13 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YP_1630 cb26528e7c217c38bb893fda80403228 465 Pfam PF00171 Aldehyde dehydrogenase family 17 403 1.3E-136 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YP_1630 cb26528e7c217c38bb893fda80403228 465 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 271 282 - T 14-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 YP_3278 f98ebf5cd19b3e85e78731c56ef3101d 162 Pfam PF02357 Transcription termination factor nusG 2 95 1.2E-15 T 14-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YP_3278 f98ebf5cd19b3e85e78731c56ef3101d 162 SMART SM00739 109 136 4.4E-4 T 14-10-2018 IPR005824 KOW YP_3278 f98ebf5cd19b3e85e78731c56ef3101d 162 TIGRFAM TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH 4 159 7.0E-57 T 14-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 YP_3278 f98ebf5cd19b3e85e78731c56ef3101d 162 SMART SM00738 1 100 2.5E-30 T 14-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YP_3278 f98ebf5cd19b3e85e78731c56ef3101d 162 Gene3D G3DSA:3.30.70.940 1 162 2.1E-53 T 14-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YP_3278 f98ebf5cd19b3e85e78731c56ef3101d 162 SUPERFAMILY SSF82679 1 98 1.31E-24 T 14-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YP_3278 f98ebf5cd19b3e85e78731c56ef3101d 162 Hamap MF_00951 Transcription antitermination protein RfaH [rfaH]. 1 162 47.842 T 14-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 YP_pCD48 4663d409d770ff8f6b8b876637656c2e 114 SUPERFAMILY SSF48452 9 111 1.59E-14 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_pCD48 4663d409d770ff8f6b8b876637656c2e 114 Gene3D G3DSA:1.25.40.10 2 114 1.2E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_pCD48 4663d409d770ff8f6b8b876637656c2e 114 PIRSF PIRSF017117 3 112 4.5E-45 T 14-10-2018 IPR016684 Type III secretion system chaperone, YscY YP_1793 20143e8e59d75d8b1cd81d6aa424b719 194 Pfam PF05280 Flagellar transcriptional activator (FlhC) 2 174 8.6E-83 T 14-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 YP_1793 20143e8e59d75d8b1cd81d6aa424b719 194 PIRSF PIRSF003159 2 183 1.5E-89 T 14-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 YP_1793 20143e8e59d75d8b1cd81d6aa424b719 194 ProDom PD016592 ACTIVATOR TRANSCRIPTIONAL FLAGELLUM FLAGELLAR TRANSCRIPTION FLHC RNA DNA-BINDING REGULATION DNA-DIRECTED 2 194 4.0E-112 T 14-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 YP_1793 20143e8e59d75d8b1cd81d6aa424b719 194 Hamap MF_01891 Flagellar transcriptional regulator FlhC [flhC]. 2 188 46.077 T 14-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 YP_1793 20143e8e59d75d8b1cd81d6aa424b719 194 SUPERFAMILY SSF160930 6 162 8.24E-65 T 14-10-2018 YP_2658 85b5712bd4f4b6a1a43165f53390bba6 198 SUPERFAMILY SSF55811 10 188 4.6E-50 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YP_2658 85b5712bd4f4b6a1a43165f53390bba6 198 Pfam PF00293 NUDIX domain 45 169 1.8E-12 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YP_2658 85b5712bd4f4b6a1a43165f53390bba6 198 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 11 185 5.0E-54 T 14-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 YP_2658 85b5712bd4f4b6a1a43165f53390bba6 198 Gene3D G3DSA:3.90.79.10 2 188 3.7E-57 T 14-10-2018 YP_1859 552765105bd5dbfeaefc65bebfc1a863 206 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 14 193 35.339 T 14-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 YP_1859 552765105bd5dbfeaefc65bebfc1a863 206 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 27 40 - T 14-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 YP_1859 552765105bd5dbfeaefc65bebfc1a863 206 SUPERFAMILY SSF53178 14 203 3.79E-68 T 14-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 YP_1859 552765105bd5dbfeaefc65bebfc1a863 206 Gene3D G3DSA:3.40.50.1470 7 205 3.0E-72 T 14-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 YP_1859 552765105bd5dbfeaefc65bebfc1a863 206 Pfam PF01195 Peptidyl-tRNA hydrolase 16 199 4.3E-52 T 14-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 YP_1859 552765105bd5dbfeaefc65bebfc1a863 206 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 121 131 - T 14-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 YP_1859 552765105bd5dbfeaefc65bebfc1a863 206 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 14 200 1.7E-68 T 14-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 YP_3633 d0743e8d7b865c0d989508cb6c9c7fc7 458 SUPERFAMILY SSF53244 319 452 3.66E-36 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YP_3633 d0743e8d7b865c0d989508cb6c9c7fc7 458 Pfam PF02875 Mur ligase family, glutamate ligase domain 319 397 7.1E-14 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 YP_3633 d0743e8d7b865c0d989508cb6c9c7fc7 458 Gene3D G3DSA:3.40.1190.10 86 317 1.6E-85 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YP_3633 d0743e8d7b865c0d989508cb6c9c7fc7 458 Gene3D G3DSA:3.40.1390.10 1 85 2.5E-25 T 14-10-2018 YP_3633 d0743e8d7b865c0d989508cb6c9c7fc7 458 Pfam PF08245 Mur ligase middle domain 111 299 3.9E-48 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 YP_3633 d0743e8d7b865c0d989508cb6c9c7fc7 458 Pfam PF01225 Mur ligase family, catalytic domain 28 96 9.4E-13 T 14-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 YP_3633 d0743e8d7b865c0d989508cb6c9c7fc7 458 SUPERFAMILY SSF63418 1 102 1.24E-27 T 14-10-2018 IPR035911 MurE/MurF, N-terminal YP_3633 d0743e8d7b865c0d989508cb6c9c7fc7 458 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 453 34.188 T 14-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3633 d0743e8d7b865c0d989508cb6c9c7fc7 458 Gene3D G3DSA:3.90.190.20 318 458 2.4E-45 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YP_3633 d0743e8d7b865c0d989508cb6c9c7fc7 458 SUPERFAMILY SSF53623 105 316 3.92E-58 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YP_3633 d0743e8d7b865c0d989508cb6c9c7fc7 458 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 34 452 2.0E-139 T 14-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3602 547a8be9b36feee1f8d87c42c71af5b6 959 Gene3D G3DSA:3.90.1150.10 767 902 5.9E-42 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_3602 547a8be9b36feee1f8d87c42c71af5b6 959 Pfam PF02347 Glycine cleavage system P-protein 16 440 6.1E-179 T 14-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 YP_3602 547a8be9b36feee1f8d87c42c71af5b6 959 Pfam PF02347 Glycine cleavage system P-protein 477 739 1.2E-8 T 14-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 YP_3602 547a8be9b36feee1f8d87c42c71af5b6 959 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 8 958 25.392 T 14-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 YP_3602 547a8be9b36feee1f8d87c42c71af5b6 959 SUPERFAMILY SSF53383 479 953 3.25E-97 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_3602 547a8be9b36feee1f8d87c42c71af5b6 959 Gene3D G3DSA:3.40.640.10 525 756 2.2E-60 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_3602 547a8be9b36feee1f8d87c42c71af5b6 959 Gene3D G3DSA:3.40.640.10 96 355 1.6E-96 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_3602 547a8be9b36feee1f8d87c42c71af5b6 959 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 17 952 0.0 T 14-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 YP_3602 547a8be9b36feee1f8d87c42c71af5b6 959 SUPERFAMILY SSF53383 17 440 8.77E-98 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_0421 9baa826b24a68eb07b2891fb6c1b8705 446 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 151 360 1.5E-73 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_0421 9baa826b24a68eb07b2891fb6c1b8705 446 Gene3D G3DSA:3.40.50.12240 26 444 3.2E-139 T 14-10-2018 YP_0421 9baa826b24a68eb07b2891fb6c1b8705 446 SUPERFAMILY SSF52540 98 366 6.75E-92 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0421 9baa826b24a68eb07b2891fb6c1b8705 446 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 351 360 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_0421 9baa826b24a68eb07b2891fb6c1b8705 446 SMART SM00382 163 344 2.8E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0421 9baa826b24a68eb07b2891fb6c1b8705 446 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 32 95 3.0E-4 T 14-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_0421 9baa826b24a68eb07b2891fb6c1b8705 446 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 24 426 9.8E-156 T 14-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_3047 632b0d27ea53e34a56296a0980fc585d 348 SUPERFAMILY SSF46894 15 109 1.76E-15 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_3047 632b0d27ea53e34a56296a0980fc585d 348 Gene3D G3DSA:1.10.10.10 3 114 1.5E-17 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3047 632b0d27ea53e34a56296a0980fc585d 348 Pfam PF00486 Transcriptional regulatory protein, C terminal 37 109 2.2E-14 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_3047 632b0d27ea53e34a56296a0980fc585d 348 SMART SM00862 34 109 1.3E-8 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_3640 70270a9c734e0d2e1afcd92fcc665982 336 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 50 1.3E-18 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_3640 70270a9c734e0d2e1afcd92fcc665982 336 Gene3D G3DSA:1.10.260.40 1 61 3.1E-28 T 14-10-2018 YP_3640 70270a9c734e0d2e1afcd92fcc665982 336 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 2 328 1.0E-148 T 14-10-2018 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 YP_3640 70270a9c734e0d2e1afcd92fcc665982 336 SMART SM00354 1 73 2.9E-31 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_3640 70270a9c734e0d2e1afcd92fcc665982 336 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 62 304 5.4E-14 T 14-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain YP_3640 70270a9c734e0d2e1afcd92fcc665982 336 Gene3D G3DSA:3.40.50.2300 62 154 6.8E-25 T 14-10-2018 YP_3640 70270a9c734e0d2e1afcd92fcc665982 336 SUPERFAMILY SSF53822 60 314 9.23E-40 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_3640 70270a9c734e0d2e1afcd92fcc665982 336 Gene3D G3DSA:3.40.50.2300 155 333 1.5E-27 T 14-10-2018 YP_3640 70270a9c734e0d2e1afcd92fcc665982 336 SUPERFAMILY SSF47413 2 58 2.38E-15 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_0325 1251447bf4ef911a32b51277abc58921 106 Gene3D G3DSA:1.20.5.400 21 63 2.3E-13 T 14-10-2018 YP_0325 1251447bf4ef911a32b51277abc58921 106 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 35.701 T 14-10-2018 IPR023081 Cell division protein FtsB YP_0325 1251447bf4ef911a32b51277abc58921 106 Pfam PF04977 Septum formation initiator 11 89 6.1E-30 T 14-10-2018 IPR007060 Septum formation initiator FtsL/DivIC YP_1353 37b0720718cdaa32fa807c0deefd4b4d 162 Pfam PF13924 Lipocalin-like domain 27 160 2.8E-32 T 14-10-2018 IPR024311 Lipocalin-like domain YP_0826 2305238ee3e9421127685e41d8d8360a 321 Gene3D G3DSA:3.40.50.720 6 303 1.8E-112 T 14-10-2018 YP_0826 2305238ee3e9421127685e41d8d8360a 321 Gene3D G3DSA:3.90.25.10 168 312 1.8E-112 T 14-10-2018 YP_0826 2305238ee3e9421127685e41d8d8360a 321 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 3 314 48.5 T 14-10-2018 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00051+1.1.1.271|KEGG: 00520+1.1.1.271|MetaCyc: PWY-66|Reactome: R-HSA-6787639 YP_0826 2305238ee3e9421127685e41d8d8360a 321 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 233 2.7E-75 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YP_0826 2305238ee3e9421127685e41d8d8360a 321 SUPERFAMILY SSF51735 1 318 4.83E-74 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2380 216b551e4880331adcc390331b09576f 147 SUPERFAMILY SSF55804 1 145 3.27E-40 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YP_2380 216b551e4880331adcc390331b09576f 147 Gene3D G3DSA:3.40.930.10 1 147 6.0E-60 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YP_2380 216b551e4880331adcc390331b09576f 147 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 145 1.1E-36 T 14-10-2018 IPR002178 PTS EIIA type-2 domain YP_2721 e89217c58943926e06888eb9d6521559 464 Pfam PF16325 Peptidase family U32 C-terminal domain 369 450 5.0E-22 T 14-10-2018 IPR032525 Peptidase family U32, C-terminal YP_2721 e89217c58943926e06888eb9d6521559 464 ProSitePatterns PS01276 Peptidase family U32 signature. 172 190 - T 14-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 YP_2721 e89217c58943926e06888eb9d6521559 464 Gene3D G3DSA:2.40.30.10 365 451 3.1E-11 T 14-10-2018 YP_2721 e89217c58943926e06888eb9d6521559 464 Pfam PF01136 Peptidase family U32 86 353 4.0E-95 T 14-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 YP_3434 6136ebcd92185518179bdcd6c5b525b3 447 PIRSF PIRSF002746 1 447 1.7E-141 T 14-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 YP_3434 6136ebcd92185518179bdcd6c5b525b3 447 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 5 447 6.0E-171 T 14-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 YP_3434 6136ebcd92185518179bdcd6c5b525b3 447 Pfam PF02447 GntP family permease 4 445 5.0E-158 T 14-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 YP_1621 bb12d50d4f3aeba30d1bf2096b86c522 199 Gene3D G3DSA:3.90.79.10 23 198 5.1E-47 T 14-10-2018 YP_1621 bb12d50d4f3aeba30d1bf2096b86c522 199 ProSitePatterns PS01293 Nudix CoA signature. 56 76 - T 14-10-2018 IPR000059 NUDIX hydrolase, NudL, conserved site GO:0000287|GO:0009132|GO:0016818|GO:0030145 Reactome: R-HSA-390918|Reactome: R-HSA-9033241 YP_1621 bb12d50d4f3aeba30d1bf2096b86c522 199 Hamap MF_01592 Uncharacterized Nudix hydrolase NudL [nudL]. 4 199 53.074 T 14-10-2018 IPR023735 Uncharacterised nudix hydrolase NudL GO:0016818 YP_1621 bb12d50d4f3aeba30d1bf2096b86c522 199 SUPERFAMILY SSF55811 27 194 6.91E-34 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YP_1621 bb12d50d4f3aeba30d1bf2096b86c522 199 Pfam PF00293 NUDIX domain 39 152 1.3E-13 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YP_0603 143ecc053f08aec272d358cbee11d76b 299 Pfam PF01136 Peptidase family U32 99 216 1.2E-11 T 14-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 YP_2528 b041527537b65fcf9efd7e82da948961 86 Pfam PF12838 4Fe-4S dicluster domain 8 56 1.1E-6 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2528 b041527537b65fcf9efd7e82da948961 86 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2528 b041527537b65fcf9efd7e82da948961 86 Gene3D G3DSA:3.30.70.20 2 86 1.3E-35 T 14-10-2018 YP_2528 b041527537b65fcf9efd7e82da948961 86 SUPERFAMILY SSF54862 5 63 3.87E-17 T 14-10-2018 YP_2464 ed8cf35b822f79f4696178affd4da200 268 SUPERFAMILY SSF52540 23 236 5.02E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2464 ed8cf35b822f79f4696178affd4da200 268 Pfam PF00005 ABC transporter 26 175 1.9E-18 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2464 ed8cf35b822f79f4696178affd4da200 268 Gene3D G3DSA:3.40.50.300 10 263 7.3E-51 T 14-10-2018 YP_2464 ed8cf35b822f79f4696178affd4da200 268 SMART SM00382 35 223 4.5E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3500 587c99ae403fa52b4a6f4ec0d96754a6 273 SUPERFAMILY SSF51735 4 162 1.54E-37 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3500 587c99ae403fa52b4a6f4ec0d96754a6 273 Gene3D G3DSA:1.10.3730.10 166 273 4.4E-33 T 14-10-2018 YP_3500 587c99ae403fa52b4a6f4ec0d96754a6 273 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 269 24.72 T 14-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 YP_3500 587c99ae403fa52b4a6f4ec0d96754a6 273 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 224 247 - T 14-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 YP_3500 587c99ae403fa52b4a6f4ec0d96754a6 273 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 6 100 1.4E-18 T 14-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal YP_3500 587c99ae403fa52b4a6f4ec0d96754a6 273 SUPERFAMILY SSF48179 163 271 3.74E-28 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_3500 587c99ae403fa52b4a6f4ec0d96754a6 273 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 164 269 4.4E-29 T 14-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 YP_3500 587c99ae403fa52b4a6f4ec0d96754a6 273 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 269 2.0E-70 T 14-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 YP_3500 587c99ae403fa52b4a6f4ec0d96754a6 273 Gene3D G3DSA:3.40.50.720 2 165 4.8E-49 T 14-10-2018 YP_3500 587c99ae403fa52b4a6f4ec0d96754a6 273 PIRSF PIRSF000193 3 271 5.7E-76 T 14-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 YP_2140 ea353123980501e6f301b57e2784e58e 347 Gene3D G3DSA:3.40.50.300 3 184 1.1E-56 T 14-10-2018 YP_2140 ea353123980501e6f301b57e2784e58e 347 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 227 236 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site YP_2140 ea353123980501e6f301b57e2784e58e 347 Gene3D G3DSA:1.10.8.60 185 268 5.2E-27 T 14-10-2018 YP_2140 ea353123980501e6f301b57e2784e58e 347 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 298 315 5.2E-7 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YP_2140 ea353123980501e6f301b57e2784e58e 347 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 315 335 5.2E-7 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YP_2140 ea353123980501e6f301b57e2784e58e 347 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 99 114 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YP_2140 ea353123980501e6f301b57e2784e58e 347 TIGRFAM TIGR02974 phageshock_pspF: psp operon transcriptional activator 13 332 3.5E-163 T 14-10-2018 IPR014317 Transcription activator PspF YP_2140 ea353123980501e6f301b57e2784e58e 347 SUPERFAMILY SSF46689 227 334 1.66E-8 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2140 ea353123980501e6f301b57e2784e58e 347 Pfam PF00158 Sigma-54 interaction domain 14 175 5.6E-60 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 YP_2140 ea353123980501e6f301b57e2784e58e 347 SMART SM00382 33 176 1.1E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2140 ea353123980501e6f301b57e2784e58e 347 Pfam PF02954 Bacterial regulatory protein, Fis family 295 331 2.3E-7 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YP_2140 ea353123980501e6f301b57e2784e58e 347 SUPERFAMILY SSF52540 13 250 2.3E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2140 ea353123980501e6f301b57e2784e58e 347 Gene3D G3DSA:1.10.10.60 269 335 6.1E-8 T 14-10-2018 YP_2067 56c015148e9b6013aa89e6db15c8f610 338 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 14-10-2018 YP_2067 56c015148e9b6013aa89e6db15c8f610 338 Gene3D G3DSA:1.10.260.40 3 58 6.6E-22 T 14-10-2018 YP_2067 56c015148e9b6013aa89e6db15c8f610 338 Gene3D G3DSA:3.40.50.2300 160 289 3.1E-69 T 14-10-2018 YP_2067 56c015148e9b6013aa89e6db15c8f610 338 Pfam PF13377 Periplasmic binding protein-like domain 169 329 3.4E-33 T 14-10-2018 YP_2067 56c015148e9b6013aa89e6db15c8f610 338 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 6.3E-6 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2067 56c015148e9b6013aa89e6db15c8f610 338 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 6.3E-6 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2067 56c015148e9b6013aa89e6db15c8f610 338 SUPERFAMILY SSF53822 61 331 3.26E-79 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_2067 56c015148e9b6013aa89e6db15c8f610 338 Gene3D G3DSA:3.40.50.2300 63 304 3.1E-69 T 14-10-2018 YP_2067 56c015148e9b6013aa89e6db15c8f610 338 SUPERFAMILY SSF47413 2 56 5.23E-17 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_2067 56c015148e9b6013aa89e6db15c8f610 338 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.9E-21 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2067 56c015148e9b6013aa89e6db15c8f610 338 SMART SM00354 1 71 1.1E-27 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_3371 925430699ecc5f14756fd90678981890 257 Pfam PF00196 Bacterial regulatory proteins, luxR family 199 252 1.3E-18 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_3371 925430699ecc5f14756fd90678981890 257 Pfam PF00072 Response regulator receiver domain 66 175 3.4E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_3371 925430699ecc5f14756fd90678981890 257 SUPERFAMILY SSF52172 63 190 3.42E-24 T 14-10-2018 IPR011006 CheY-like superfamily YP_3371 925430699ecc5f14756fd90678981890 257 SMART SM00421 197 254 2.2E-22 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_3371 925430699ecc5f14756fd90678981890 257 SUPERFAMILY SSF46894 184 255 8.16E-20 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_3371 925430699ecc5f14756fd90678981890 257 ProSitePatterns PS00622 LuxR-type HTH domain signature. 214 241 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_3371 925430699ecc5f14756fd90678981890 257 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 230 242 1.0E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_3371 925430699ecc5f14756fd90678981890 257 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 200 214 1.0E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_3371 925430699ecc5f14756fd90678981890 257 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 214 230 1.0E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_3371 925430699ecc5f14756fd90678981890 257 Gene3D G3DSA:3.40.50.12740 65 256 9.9E-51 T 14-10-2018 YP_3371 925430699ecc5f14756fd90678981890 257 SMART SM00448 64 174 2.1E-22 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0664 ea17c52629cc6141603a5c2ee203aa7c 394 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 293 3.5E-13 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_0664 ea17c52629cc6141603a5c2ee203aa7c 394 Gene3D G3DSA:1.10.287.470 99 190 1.6E-13 T 14-10-2018 YP_0664 ea17c52629cc6141603a5c2ee203aa7c 394 Pfam PF00529 HlyD membrane-fusion protein of T1SS 40 350 4.5E-15 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YP_0664 ea17c52629cc6141603a5c2ee203aa7c 394 Gene3D G3DSA:2.40.50.100 64 98 1.6E-13 T 14-10-2018 YP_0664 ea17c52629cc6141603a5c2ee203aa7c 394 SUPERFAMILY SSF111369 173 273 1.7E-10 T 14-10-2018 YP_0664 ea17c52629cc6141603a5c2ee203aa7c 394 SUPERFAMILY SSF111369 63 117 1.57E-6 T 14-10-2018 YP_0664 ea17c52629cc6141603a5c2ee203aa7c 394 Gene3D G3DSA:2.40.30.170 236 359 8.4E-35 T 14-10-2018 YP_0664 ea17c52629cc6141603a5c2ee203aa7c 394 TIGRFAM TIGR00998 8a0101: efflux pump membrane protein 24 349 1.2E-135 T 14-10-2018 IPR005694 Efflux pump membrane protein Emr GO:0006855|GO:0015238 YP_0228 4d06cdcbdaa96a508fb6a347610bdc61 38 SUPERFAMILY SSF57840 1 38 5.49E-17 T 14-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0228 4d06cdcbdaa96a508fb6a347610bdc61 38 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 17.971 T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0228 4d06cdcbdaa96a508fb6a347610bdc61 38 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 4.7E-22 T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0228 4d06cdcbdaa96a508fb6a347610bdc61 38 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 38 4.0E-10 T 14-10-2018 YP_0228 4d06cdcbdaa96a508fb6a347610bdc61 38 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 37 - T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0228 4d06cdcbdaa96a508fb6a347610bdc61 38 Pfam PF00444 Ribosomal protein L36 1 38 1.7E-20 T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_3171 83bd21ed62aa88999916d69fee8f2804 263 Pfam PF05096 Glutamine cyclotransferase 27 259 2.7E-89 T 14-10-2018 IPR007788 Glutaminyl-peptide cyclotransferase GO:0016603|GO:0017186 MetaCyc: PWY-7942 YP_3171 83bd21ed62aa88999916d69fee8f2804 263 Gene3D G3DSA:2.130.10.10 30 254 3.2E-8 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 YP_3171 83bd21ed62aa88999916d69fee8f2804 263 SUPERFAMILY SSF50969 27 255 1.37E-22 T 14-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like YP_2896 ab85a3bddd04ead8da072d5bfed7424d 292 Pfam PF07729 FCD domain 123 246 9.9E-17 T 14-10-2018 IPR011711 GntR, C-terminal YP_2896 ab85a3bddd04ead8da072d5bfed7424d 292 SUPERFAMILY SSF46785 29 104 2.47E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_2896 ab85a3bddd04ead8da072d5bfed7424d 292 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 60 74 1.7E-8 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_2896 ab85a3bddd04ead8da072d5bfed7424d 292 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 74 90 1.7E-8 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_2896 ab85a3bddd04ead8da072d5bfed7424d 292 Pfam PF00392 Bacterial regulatory proteins, gntR family 37 100 3.8E-22 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_2896 ab85a3bddd04ead8da072d5bfed7424d 292 SUPERFAMILY SSF48008 121 254 1.33E-19 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_2896 ab85a3bddd04ead8da072d5bfed7424d 292 SMART SM00345 41 100 1.1E-24 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YP_2896 ab85a3bddd04ead8da072d5bfed7424d 292 Gene3D G3DSA:1.20.120.530 110 256 1.7E-19 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YP_2896 ab85a3bddd04ead8da072d5bfed7424d 292 Gene3D G3DSA:1.10.10.10 31 109 4.3E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2896 ab85a3bddd04ead8da072d5bfed7424d 292 SMART SM00895 123 247 2.1E-14 T 14-10-2018 IPR011711 GntR, C-terminal YP_1434 a2fa9a1ce4429c35711945859813a95f 196 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 3 196 8.6E-70 T 14-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 YP_1434 a2fa9a1ce4429c35711945859813a95f 196 SUPERFAMILY SSF52317 3 195 4.28E-53 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_1434 a2fa9a1ce4429c35711945859813a95f 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 72 83 9.7E-5 T 14-10-2018 YP_1434 a2fa9a1ce4429c35711945859813a95f 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 174 187 9.7E-5 T 14-10-2018 YP_1434 a2fa9a1ce4429c35711945859813a95f 196 PIRSF PIRSF000495 1 196 2.1E-63 T 14-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 YP_1434 a2fa9a1ce4429c35711945859813a95f 196 Pfam PF00117 Glutamine amidotransferase class-I 40 194 6.0E-19 T 14-10-2018 IPR017926 Glutamine amidotransferase YP_1434 a2fa9a1ce4429c35711945859813a95f 196 Gene3D G3DSA:3.40.50.880 1 196 1.2E-67 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_1434 a2fa9a1ce4429c35711945859813a95f 196 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 2 196 33.404 T 14-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 YP_3718 b20ee0d1834d8f3494943c91fb642e50 330 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 27 326 1.4E-101 T 14-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 YP_3718 b20ee0d1834d8f3494943c91fb642e50 330 SUPERFAMILY SSF51569 14 329 7.12E-116 T 14-10-2018 YP_3718 b20ee0d1834d8f3494943c91fb642e50 330 TIGRFAM TIGR00874 talAB: transaldolase 17 329 1.4E-162 T 14-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 YP_3718 b20ee0d1834d8f3494943c91fb642e50 330 ProSitePatterns PS00958 Transaldolase active site. 142 159 - T 14-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 YP_3718 b20ee0d1834d8f3494943c91fb642e50 330 Gene3D G3DSA:3.20.20.70 15 330 1.6E-148 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3718 b20ee0d1834d8f3494943c91fb642e50 330 ProSitePatterns PS01054 Transaldolase signature 1. 44 52 - T 14-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 YP_3718 b20ee0d1834d8f3494943c91fb642e50 330 Hamap MF_00492 Transaldolase [tal]. 15 330 51.772 T 14-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 YP_1617 eb43e41fba8fd40d38b465648765d0ca 460 Hamap MF_00965 ATP-dependent RNA helicase DbpA [dbpA]. 6 460 73.482 T 14-10-2018 IPR028619 ATP-dependent RNA helicase DbpA GO:0000027|GO:0003724 YP_1617 eb43e41fba8fd40d38b465648765d0ca 460 Gene3D G3DSA:3.40.50.300 216 387 3.0E-47 T 14-10-2018 YP_1617 eb43e41fba8fd40d38b465648765d0ca 460 SUPERFAMILY SSF52540 74 354 7.29E-71 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1617 eb43e41fba8fd40d38b465648765d0ca 460 SMART SM00490 256 337 2.5E-30 T 14-10-2018 IPR001650 Helicase, C-terminal YP_1617 eb43e41fba8fd40d38b465648765d0ca 460 Gene3D G3DSA:3.30.70.330 388 459 2.2E-20 T 14-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YP_1617 eb43e41fba8fd40d38b465648765d0ca 460 SMART SM00487 23 220 4.4E-55 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_1617 eb43e41fba8fd40d38b465648765d0ca 460 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YP_1617 eb43e41fba8fd40d38b465648765d0ca 460 Pfam PF00270 DEAD/DEAH box helicase 28 194 2.4E-44 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YP_1617 eb43e41fba8fd40d38b465648765d0ca 460 Pfam PF03880 DbpA RNA binding domain 387 457 8.1E-23 T 14-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain YP_1617 eb43e41fba8fd40d38b465648765d0ca 460 Pfam PF00271 Helicase conserved C-terminal domain 237 337 1.1E-28 T 14-10-2018 IPR001650 Helicase, C-terminal YP_1617 eb43e41fba8fd40d38b465648765d0ca 460 Gene3D G3DSA:3.40.50.300 4 210 1.4E-68 T 14-10-2018 YP_3603 e43667fc284c08e165691a2d2cefeed5 128 SUPERFAMILY SSF51230 4 127 5.8E-43 T 14-10-2018 IPR011053 Single hybrid motif YP_3603 e43667fc284c08e165691a2d2cefeed5 128 Gene3D G3DSA:2.40.50.100 2 128 6.6E-50 T 14-10-2018 YP_3603 e43667fc284c08e165691a2d2cefeed5 128 Pfam PF01597 Glycine cleavage H-protein 8 127 1.1E-45 T 14-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate YP_3603 e43667fc284c08e165691a2d2cefeed5 128 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 127 2.8E-53 T 14-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 YP_3603 e43667fc284c08e165691a2d2cefeed5 128 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 127 39.155 T 14-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 YP_3603 e43667fc284c08e165691a2d2cefeed5 128 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 14-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 YP_0440 dac91b2b712cd37355d2a46f50e668a2 216 Gene3D G3DSA:3.40.50.720 1 209 2.4E-37 T 14-10-2018 YP_0440 dac91b2b712cd37355d2a46f50e668a2 216 Pfam PF13460 NAD(P)H-binding 8 195 5.1E-36 T 14-10-2018 IPR016040 NAD(P)-binding domain YP_0440 dac91b2b712cd37355d2a46f50e668a2 216 SUPERFAMILY SSF51735 4 206 5.89E-28 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1249 3ea9fd3391875e66d24d0d5f31d641d6 466 PIRSF PIRSF029692 12 466 2.1E-205 T 14-10-2018 IPR016935 Staphylopine dehydrogenase YP_1249 3ea9fd3391875e66d24d0d5f31d641d6 466 Gene3D G3DSA:3.40.50.720 14 208 5.4E-10 T 14-10-2018 YP_1249 3ea9fd3391875e66d24d0d5f31d641d6 466 Pfam PF10100 Staphylopine dehydrogenase 17 462 9.2E-181 T 14-10-2018 IPR016935 Staphylopine dehydrogenase YP_1249 3ea9fd3391875e66d24d0d5f31d641d6 466 SUPERFAMILY SSF51735 18 154 6.3E-5 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3461 88f388c578b37cea90e281e2df655046 167 PIRSF PIRSF028301 1 166 1.1E-55 T 14-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YP_3461 88f388c578b37cea90e281e2df655046 167 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 6 160 4.7E-53 T 14-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YP_3461 88f388c578b37cea90e281e2df655046 167 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 9 159 3.5E-56 T 14-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YP_2231 ace24be9af9f6a516bc461176d46ad44 291 Gene3D G3DSA:3.30.200.20 1 92 1.7E-20 T 14-10-2018 YP_2231 ace24be9af9f6a516bc461176d46ad44 291 Pfam PF03881 Fructosamine kinase 1 285 6.5E-117 T 14-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 YP_2231 ace24be9af9f6a516bc461176d46ad44 291 Gene3D G3DSA:3.90.1200.10 98 286 8.5E-57 T 14-10-2018 YP_2231 ace24be9af9f6a516bc461176d46ad44 291 SUPERFAMILY SSF56112 4 279 2.13E-38 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily YP_2231 ace24be9af9f6a516bc461176d46ad44 291 PIRSF PIRSF006221 1 287 1.5E-91 T 14-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 YP_3415 667db64e7eac9317bcbf3d57c165a6b2 3710 Gene3D G3DSA:2.160.20.20 3216 3388 1.3E-42 T 14-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YP_3415 667db64e7eac9317bcbf3d57c165a6b2 3710 SUPERFAMILY SSF51126 2935 3386 3.45E-46 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor YP_3415 667db64e7eac9317bcbf3d57c165a6b2 3710 Gene3D G3DSA:2.40.128.130 3391 3710 1.3E-95 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_3415 667db64e7eac9317bcbf3d57c165a6b2 3710 SMART SM00869 3432 3699 1.1E-45 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_3415 667db64e7eac9317bcbf3d57c165a6b2 3710 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 3278 3710 1.8E-127 T 14-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YP_3415 667db64e7eac9317bcbf3d57c165a6b2 3710 SUPERFAMILY SSF103515 3399 3710 4.97E-53 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_3415 667db64e7eac9317bcbf3d57c165a6b2 3710 Pfam PF13018 Extended Signal Peptide of Type V secretion system 6 29 5.1E-9 T 14-10-2018 IPR024973 ESPR domain YP_0488 e59a1ce00dacc60c9e4c78568c4301fa 290 SMART SM00342 192 275 9.8E-24 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_0488 e59a1ce00dacc60c9e4c78568c4301fa 290 Gene3D G3DSA:1.10.10.60 174 279 5.7E-26 T 14-10-2018 YP_0488 e59a1ce00dacc60c9e4c78568c4301fa 290 Hamap MF_01533 HTH-type transcriptional activator RhaR [rhaR]. 1 282 54.367 T 14-10-2018 IPR023699 Transcription activator HTH, RhaR GO:0003700|GO:0005737|GO:0019299|GO:0045893 YP_0488 e59a1ce00dacc60c9e4c78568c4301fa 290 SUPERFAMILY SSF51182 16 91 3.2E-11 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily YP_0488 e59a1ce00dacc60c9e4c78568c4301fa 290 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 244 259 6.7E-7 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_0488 e59a1ce00dacc60c9e4c78568c4301fa 290 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 259 275 6.7E-7 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_0488 e59a1ce00dacc60c9e4c78568c4301fa 290 Gene3D G3DSA:2.60.120.10 8 97 1.6E-8 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_0488 e59a1ce00dacc60c9e4c78568c4301fa 290 SUPERFAMILY SSF46689 228 280 5.82E-14 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0488 e59a1ce00dacc60c9e4c78568c4301fa 290 Pfam PF12833 Helix-turn-helix domain 206 277 1.6E-22 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_0488 e59a1ce00dacc60c9e4c78568c4301fa 290 Pfam PF02311 AraC-like ligand binding domain 23 141 1.5E-15 T 14-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 YP_0488 e59a1ce00dacc60c9e4c78568c4301fa 290 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 229 271 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YP_0116 abec03b1827b136ce102bd26deb0d38a 105 Hamap MF_00744 Met repressor [metJ]. 1 105 39.926 T 14-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 YP_0116 abec03b1827b136ce102bd26deb0d38a 105 Pfam PF01340 Met Apo-repressor, MetJ 3 99 1.3E-57 T 14-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 YP_0116 abec03b1827b136ce102bd26deb0d38a 105 SUPERFAMILY SSF47598 2 105 5.56E-57 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 YP_0116 abec03b1827b136ce102bd26deb0d38a 105 Gene3D G3DSA:1.10.140.10 2 105 1.7E-62 T 14-10-2018 IPR023453 Methionine repressor MetJ domain superfamily YP_0116 abec03b1827b136ce102bd26deb0d38a 105 ProDom PD020365 REPRESSOR MET BIOSYNTHESIS TRANSCRIPTION METJ METHIONINE REGULON DNA-BINDING REGULATORY AMINO-ACID 10 101 8.0E-49 T 14-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 YP_2855 8ffdd5d0cced57bb2c6dbd923671834d 566 SMART SM00304 239 293 8.9E-7 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_2855 8ffdd5d0cced57bb2c6dbd923671834d 566 SMART SM00319 69 204 3.2E-5 T 14-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 YP_2855 8ffdd5d0cced57bb2c6dbd923671834d 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 315 344 5.3E-50 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_2855 8ffdd5d0cced57bb2c6dbd923671834d 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 421 450 5.3E-50 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_2855 8ffdd5d0cced57bb2c6dbd923671834d 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 214 234 5.3E-50 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_2855 8ffdd5d0cced57bb2c6dbd923671834d 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 392 419 5.3E-50 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_2855 8ffdd5d0cced57bb2c6dbd923671834d 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 30 55 5.3E-50 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_2855 8ffdd5d0cced57bb2c6dbd923671834d 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 85 100 5.3E-50 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_2855 8ffdd5d0cced57bb2c6dbd923671834d 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 469 498 5.3E-50 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_2855 8ffdd5d0cced57bb2c6dbd923671834d 566 SUPERFAMILY SSF58104 260 546 2.62E-60 T 14-10-2018 YP_2855 8ffdd5d0cced57bb2c6dbd923671834d 566 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 353 507 4.3E-44 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YP_2855 8ffdd5d0cced57bb2c6dbd923671834d 566 Pfam PF02203 Tar ligand binding domain homologue 28 196 9.7E-38 T 14-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 YP_2855 8ffdd5d0cced57bb2c6dbd923671834d 566 Gene3D G3DSA:1.20.120.30 47 214 2.6E-40 T 14-10-2018 YP_2855 8ffdd5d0cced57bb2c6dbd923671834d 566 Gene3D G3DSA:1.10.287.950 239 543 8.9E-79 T 14-10-2018 YP_2855 8ffdd5d0cced57bb2c6dbd923671834d 566 SUPERFAMILY SSF47170 50 200 2.49E-40 T 14-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YP_2855 8ffdd5d0cced57bb2c6dbd923671834d 566 SMART SM00283 294 541 3.0E-66 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YP_1322 1c513d8c9cb06bb9788b2b8eb9631e57 235 SUPERFAMILY SSF55174 1 55 2.21E-11 T 14-10-2018 YP_1322 1c513d8c9cb06bb9788b2b8eb9631e57 235 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 223 2.1E-57 T 14-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 YP_1322 1c513d8c9cb06bb9788b2b8eb9631e57 235 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 14-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 YP_1322 1c513d8c9cb06bb9788b2b8eb9631e57 235 Gene3D G3DSA:3.30.70.1560 128 209 8.3E-61 T 14-10-2018 YP_1322 1c513d8c9cb06bb9788b2b8eb9631e57 235 SMART SM00363 1 69 3.0E-7 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_1322 1c513d8c9cb06bb9788b2b8eb9631e57 235 Pfam PF01479 S4 domain 1 46 6.0E-8 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_1322 1c513d8c9cb06bb9788b2b8eb9631e57 235 Gene3D G3DSA:3.10.290.10 1 62 8.1E-21 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YP_1322 1c513d8c9cb06bb9788b2b8eb9631e57 235 Pfam PF00849 RNA pseudouridylate synthase 62 192 2.1E-18 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_1322 1c513d8c9cb06bb9788b2b8eb9631e57 235 Gene3D G3DSA:3.30.70.580 63 227 8.3E-61 T 14-10-2018 YP_1322 1c513d8c9cb06bb9788b2b8eb9631e57 235 SUPERFAMILY SSF55120 61 227 5.6E-47 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_1512 fd8b8aab9509e7a95b7bf4cd36ac734b 99 SUPERFAMILY SSF160719 16 81 9.55E-25 T 14-10-2018 YP_1512 fd8b8aab9509e7a95b7bf4cd36ac734b 99 Gene3D G3DSA:3.10.450.40 6 95 4.6E-18 T 14-10-2018 YP_1512 fd8b8aab9509e7a95b7bf4cd36ac734b 99 Pfam PF04965 Gene 25-like lysozyme 20 81 1.6E-13 T 14-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD YP_2074 9d4189cdd4fa514433c59d3c9f1bfe15 502 Gene3D G3DSA:3.30.1730.10 10 176 5.3E-58 T 14-10-2018 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 YP_2074 9d4189cdd4fa514433c59d3c9f1bfe15 502 Gene3D G3DSA:3.40.50.1580 191 502 1.9E-113 T 14-10-2018 YP_2074 9d4189cdd4fa514433c59d3c9f1bfe15 502 Hamap MF_01932 AMP nucleosidase [amn]. 11 502 57.622 T 14-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 YP_2074 9d4189cdd4fa514433c59d3c9f1bfe15 502 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 20 171 1.4E-49 T 14-10-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 YP_2074 9d4189cdd4fa514433c59d3c9f1bfe15 502 Pfam PF01048 Phosphorylase superfamily 286 449 7.3E-18 T 14-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 YP_2074 9d4189cdd4fa514433c59d3c9f1bfe15 502 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 20 502 4.8E-222 T 14-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 YP_2074 9d4189cdd4fa514433c59d3c9f1bfe15 502 SUPERFAMILY SSF53167 18 502 4.22E-152 T 14-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 YP_2719 71c77f0147c09c4265c17bf85764363c 239 Gene3D G3DSA:1.10.10.10 141 238 2.2E-33 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2719 71c77f0147c09c4265c17bf85764363c 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 230 6.8E-23 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_2719 71c77f0147c09c4265c17bf85764363c 239 Pfam PF00072 Response regulator receiver domain 14 122 7.0E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_2719 71c77f0147c09c4265c17bf85764363c 239 SMART SM00448 12 122 3.7E-40 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_2719 71c77f0147c09c4265c17bf85764363c 239 SUPERFAMILY SSF52172 12 189 3.84E-40 T 14-10-2018 IPR011006 CheY-like superfamily YP_2719 71c77f0147c09c4265c17bf85764363c 239 Gene3D G3DSA:3.40.50.2300 2 139 1.8E-36 T 14-10-2018 YP_2719 71c77f0147c09c4265c17bf85764363c 239 SMART SM00862 155 231 6.9E-26 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_pMT068 3ebd7da77540b3555cb596764b5216ae 314 SUPERFAMILY SSF88723 3 170 1.77E-26 T 14-10-2018 IPR029060 PIN-like domain superfamily YP_pMT068 3ebd7da77540b3555cb596764b5216ae 314 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 163 9.3E-25 T 14-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 YP_pMT068 3ebd7da77540b3555cb596764b5216ae 314 SUPERFAMILY SSF47807 174 305 2.69E-14 T 14-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YP_pMT068 3ebd7da77540b3555cb596764b5216ae 314 SMART SM00475 2 281 1.7E-85 T 14-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 YP_pMT068 3ebd7da77540b3555cb596764b5216ae 314 SMART SM00279 175 210 7.4E-11 T 14-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 YP_pMT068 3ebd7da77540b3555cb596764b5216ae 314 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 174 256 7.6E-14 T 14-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 YP_pMT068 3ebd7da77540b3555cb596764b5216ae 314 Gene3D G3DSA:3.40.50.1010 1 168 2.4E-46 T 14-10-2018 YP_pMT068 3ebd7da77540b3555cb596764b5216ae 314 Gene3D G3DSA:1.10.150.20 169 247 2.1E-13 T 14-10-2018 YP_2505 770e65b99a96b0442c8998b6fdf2dee8 243 Pfam PF06149 Protein of unknown function (DUF969) 7 224 2.2E-88 T 14-10-2018 IPR010374 Protein of unknown function DUF969 YP_2097 b01eb133949cd332fc0114e2224084c5 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 335 354 3.8E-39 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YP_2097 b01eb133949cd332fc0114e2224084c5 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 295 311 3.8E-39 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YP_2097 b01eb133949cd332fc0114e2224084c5 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 405 426 3.8E-39 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YP_2097 b01eb133949cd332fc0114e2224084c5 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 248 267 3.8E-39 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YP_2097 b01eb133949cd332fc0114e2224084c5 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 268 287 3.8E-39 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YP_2097 b01eb133949cd332fc0114e2224084c5 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 151 171 3.8E-39 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YP_2097 b01eb133949cd332fc0114e2224084c5 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 450 468 3.8E-39 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YP_2097 b01eb133949cd332fc0114e2224084c5 499 PIRSF PIRSF006615 1 499 9.9E-203 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YP_2097 b01eb133949cd332fc0114e2224084c5 499 SUPERFAMILY SSF55486 3 499 8.79E-124 T 14-10-2018 YP_2097 b01eb133949cd332fc0114e2224084c5 499 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 12 498 1.2E-94 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YP_2097 b01eb133949cd332fc0114e2224084c5 499 Gene3D G3DSA:1.10.1370.30 1 499 4.1E-201 T 14-10-2018 YP_1694 0f7ea8e4d581d0bdf63db23cd661cf97 405 SUPERFAMILY SSF53092 8 176 2.09E-13 T 14-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YP_1694 0f7ea8e4d581d0bdf63db23cd661cf97 405 Gene3D G3DSA:3.90.230.10 177 403 5.3E-46 T 14-10-2018 YP_1694 0f7ea8e4d581d0bdf63db23cd661cf97 405 SUPERFAMILY SSF55920 174 402 1.96E-47 T 14-10-2018 IPR036005 Creatinase/aminopeptidase-like YP_1694 0f7ea8e4d581d0bdf63db23cd661cf97 405 Pfam PF01321 Creatinase/Prolidase N-terminal domain 15 177 1.3E-27 T 14-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 YP_1694 0f7ea8e4d581d0bdf63db23cd661cf97 405 Gene3D G3DSA:3.40.350.10 13 176 2.4E-14 T 14-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YP_1694 0f7ea8e4d581d0bdf63db23cd661cf97 405 Pfam PF00557 Metallopeptidase family M24 184 388 1.3E-34 T 14-10-2018 IPR000994 Peptidase M24 YP_0287 be40c73324580fd62d5bf17b7486f236 384 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 88 312 8.6E-44 T 14-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 YP_0287 be40c73324580fd62d5bf17b7486f236 384 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 85 342 2.9E-111 T 14-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 YP_0287 be40c73324580fd62d5bf17b7486f236 384 SUPERFAMILY SSF52374 85 361 7.88E-85 T 14-10-2018 YP_0287 be40c73324580fd62d5bf17b7486f236 384 Gene3D G3DSA:3.40.50.620 85 363 3.6E-110 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0287 be40c73324580fd62d5bf17b7486f236 384 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 85 369 40.946 T 14-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 YP_0287 be40c73324580fd62d5bf17b7486f236 384 Gene3D G3DSA:3.40.50.620 160 297 3.6E-110 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0287 be40c73324580fd62d5bf17b7486f236 384 PRINTS PR00987 Glutamyl-tRNA synthetase signature 88 100 3.2E-14 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YP_0287 be40c73324580fd62d5bf17b7486f236 384 PRINTS PR00987 Glutamyl-tRNA synthetase signature 265 273 3.2E-14 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YP_0287 be40c73324580fd62d5bf17b7486f236 384 PRINTS PR00987 Glutamyl-tRNA synthetase signature 102 113 3.2E-14 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YP_0287 be40c73324580fd62d5bf17b7486f236 384 PRINTS PR00987 Glutamyl-tRNA synthetase signature 117 130 3.2E-14 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YP_0287 be40c73324580fd62d5bf17b7486f236 384 PRINTS PR00987 Glutamyl-tRNA synthetase signature 249 259 3.2E-14 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YP_2582 ed96920654971d575a07372a7a9dc509 200 ProSitePatterns PS00622 LuxR-type HTH domain signature. 144 171 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2582 ed96920654971d575a07372a7a9dc509 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 144 160 2.1E-7 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2582 ed96920654971d575a07372a7a9dc509 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 130 144 2.1E-7 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2582 ed96920654971d575a07372a7a9dc509 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 172 2.1E-7 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2582 ed96920654971d575a07372a7a9dc509 200 SUPERFAMILY SSF46894 115 185 2.41E-13 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_2582 ed96920654971d575a07372a7a9dc509 200 Gene3D G3DSA:1.10.10.10 104 189 2.2E-13 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2582 ed96920654971d575a07372a7a9dc509 200 Pfam PF00196 Bacterial regulatory proteins, luxR family 129 184 2.9E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2582 ed96920654971d575a07372a7a9dc509 200 SMART SM00421 127 184 6.3E-11 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1226 133e1570fd1e3e05e6402820997ef677 106 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 24 102 8.9E-34 T 14-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 YP_1226 133e1570fd1e3e05e6402820997ef677 106 Gene3D G3DSA:3.30.1390.10 1 106 3.8E-47 T 14-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YP_1226 133e1570fd1e3e05e6402820997ef677 106 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 21 101 28.223 T 14-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS YP_1226 133e1570fd1e3e05e6402820997ef677 106 SUPERFAMILY SSF54736 21 105 5.23E-33 T 14-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YP_3674 316e0fb31e417b71cd397af7c467a25c 340 Pfam PF06996 Type VI secretion, TssG 32 325 6.3E-59 T 14-10-2018 IPR010732 Type VI secretion, TssG-like YP_3674 316e0fb31e417b71cd397af7c467a25c 340 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 32 325 1.3E-52 T 14-10-2018 IPR010732 Type VI secretion, TssG-like YP_3581 9e9f0f1b84e8635ff6d6d7c08f12f3a1 120 SMART SM00530 63 118 1.6E-4 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_3581 9e9f0f1b84e8635ff6d6d7c08f12f3a1 120 Gene3D G3DSA:1.10.260.40 64 119 6.4E-11 T 14-10-2018 YP_3581 9e9f0f1b84e8635ff6d6d7c08f12f3a1 120 SUPERFAMILY SSF47413 63 115 8.16E-10 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_3581 9e9f0f1b84e8635ff6d6d7c08f12f3a1 120 Pfam PF01381 Helix-turn-helix 65 114 3.7E-7 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_0786 91f114eb51bb42054e57f77fa3c32816 588 Pfam PF00005 ABC transporter 352 500 1.5E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0786 91f114eb51bb42054e57f77fa3c32816 588 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0786 91f114eb51bb42054e57f77fa3c32816 588 Gene3D G3DSA:3.40.50.300 328 585 2.1E-77 T 14-10-2018 YP_0786 91f114eb51bb42054e57f77fa3c32816 588 SUPERFAMILY SSF52540 324 572 7.17E-79 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0786 91f114eb51bb42054e57f77fa3c32816 588 Gene3D G3DSA:1.20.1560.10 2 319 7.1E-77 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_0786 91f114eb51bb42054e57f77fa3c32816 588 SUPERFAMILY SSF90123 7 319 2.75E-72 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_0786 91f114eb51bb42054e57f77fa3c32816 588 Pfam PF00664 ABC transporter transmembrane region 21 291 1.3E-39 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YP_0786 91f114eb51bb42054e57f77fa3c32816 588 SMART SM00382 361 547 2.4E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3626 7638cfeac1176a6e08d21caf861d7f82 275 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 26 252 24.321 T 14-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 YP_3626 7638cfeac1176a6e08d21caf861d7f82 275 Pfam PF03799 Cell division protein FtsQ 130 244 1.1E-24 T 14-10-2018 IPR005548 Cell division protein FtsQ/DivIB YP_3626 7638cfeac1176a6e08d21caf861d7f82 275 Gene3D G3DSA:3.10.20.310 58 126 2.4E-33 T 14-10-2018 YP_3626 7638cfeac1176a6e08d21caf861d7f82 275 Pfam PF08478 POTRA domain, FtsQ-type 57 126 2.7E-22 T 14-10-2018 IPR013685 POTRA domain, FtsQ-type YP_3626 7638cfeac1176a6e08d21caf861d7f82 275 Gene3D G3DSA:3.40.50.11690 127 259 1.7E-48 T 14-10-2018 YP_1122 ff2129f2737067172cab60b6b7402b5f 205 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 201 2.3E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1122 ff2129f2737067172cab60b6b7402b5f 205 SMART SM00421 145 202 4.0E-9 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1122 ff2129f2737067172cab60b6b7402b5f 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 2.0E-5 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1122 ff2129f2737067172cab60b6b7402b5f 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 2.0E-5 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1122 ff2129f2737067172cab60b6b7402b5f 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 2.0E-5 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1122 ff2129f2737067172cab60b6b7402b5f 205 Gene3D G3DSA:1.10.10.10 110 204 9.1E-14 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1122 ff2129f2737067172cab60b6b7402b5f 205 SUPERFAMILY SSF46894 141 202 2.86E-13 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_1895 303f811d33ec73c64679f2ec646866c6 271 Pfam PF01904 Protein of unknown function DUF72 20 248 2.7E-51 T 14-10-2018 IPR002763 Protein of unknown function DUF72 YP_1895 303f811d33ec73c64679f2ec646866c6 271 SUPERFAMILY SSF117396 2 251 4.45E-66 T 14-10-2018 IPR036520 UPF0759 superfamily YP_1895 303f811d33ec73c64679f2ec646866c6 271 Gene3D G3DSA:3.20.20.410 1 258 2.6E-39 T 14-10-2018 IPR036520 UPF0759 superfamily YP_1438 b24ddaf28bca15f0bd5ab6147a42608c 299 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 156 177 - T 14-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 YP_1438 b24ddaf28bca15f0bd5ab6147a42608c 299 Gene3D G3DSA:3.40.190.10 103 192 1.8E-73 T 14-10-2018 YP_1438 b24ddaf28bca15f0bd5ab6147a42608c 299 SUPERFAMILY SSF53850 6 224 1.78E-70 T 14-10-2018 YP_1438 b24ddaf28bca15f0bd5ab6147a42608c 299 Pfam PF01634 ATP phosphoribosyltransferase 54 219 4.9E-48 T 14-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 YP_1438 b24ddaf28bca15f0bd5ab6147a42608c 299 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 205 298 9.5E-33 T 14-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 YP_1438 b24ddaf28bca15f0bd5ab6147a42608c 299 Gene3D G3DSA:3.40.190.10 7 221 1.8E-73 T 14-10-2018 YP_1438 b24ddaf28bca15f0bd5ab6147a42608c 299 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 6 299 35.725 T 14-10-2018 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 YP_1438 b24ddaf28bca15f0bd5ab6147a42608c 299 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 7 197 2.1E-56 T 14-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 YP_1438 b24ddaf28bca15f0bd5ab6147a42608c 299 SUPERFAMILY SSF54913 226 298 1.56E-21 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta YP_1438 b24ddaf28bca15f0bd5ab6147a42608c 299 Pfam PF08029 HisG, C-terminal domain 223 296 3.5E-24 T 14-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 YP_1438 b24ddaf28bca15f0bd5ab6147a42608c 299 Gene3D G3DSA:3.30.70.120 226 299 6.9E-35 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YP_3349 40157f58e7049353e9af4e1cadec677a 265 PIRSF PIRSF001273 11 263 7.4E-115 T 14-10-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 YP_3349 40157f58e7049353e9af4e1cadec677a 265 Pfam PF02611 CDP-diacylglycerol pyrophosphatase 41 258 1.3E-91 T 14-10-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 YP_3349 40157f58e7049353e9af4e1cadec677a 265 Hamap MF_00319 CDP-diacylglycerol pyrophosphatase [cdh]. 3 260 39.879 T 14-10-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 YP_3349 40157f58e7049353e9af4e1cadec677a 265 SUPERFAMILY SSF54197 41 258 1.33E-87 T 14-10-2018 IPR036265 HIT-like superfamily YP_3349 40157f58e7049353e9af4e1cadec677a 265 Gene3D G3DSA:3.30.428.30 35 259 7.0E-91 T 14-10-2018 IPR038433 CDP-diacylglycerol pyrophosphatase superfamily KEGG: 00564+3.6.1.26 YP_3004 15d7b812aa8ad28e02d5172a325bc220 291 Pfam PF00482 Type II secretion system (T2SS), protein F 127 247 2.9E-17 T 14-10-2018 IPR018076 Type II secretion system F domain YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 Gene3D G3DSA:3.20.20.60 398 737 1.1E-101 T 14-10-2018 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 Gene3D G3DSA:1.10.274.10 171 309 9.9E-38 T 14-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 Pfam PF00381 PTS HPr component phosphorylation site 39 118 6.7E-12 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 744 881 6.4E-30 T 14-10-2018 IPR002178 PTS EIIA type-2 domain YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 415 705 1.7E-100 T 14-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 Gene3D G3DSA:3.40.930.10 739 882 2.3E-30 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 SUPERFAMILY SSF52009 288 406 1.44E-21 T 14-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 SUPERFAMILY SSF47831 202 306 8.11E-15 T 14-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 SUPERFAMILY SSF51621 416 712 2.02E-94 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 SUPERFAMILY SSF55804 741 880 1.14E-28 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 47 54 - T 14-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 664 676 1.0E-20 T 14-10-2018 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 611 626 1.0E-20 T 14-10-2018 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 457 476 1.0E-20 T 14-10-2018 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 628 643 1.0E-20 T 14-10-2018 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 Pfam PF00391 PEP-utilising enzyme, mobile domain 317 389 8.5E-14 T 14-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 SUPERFAMILY SSF55594 37 121 3.93E-16 T 14-10-2018 IPR035895 HPr-like superfamily YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 Pfam PF05524 PEP-utilising enzyme, N-terminal 155 289 1.0E-11 T 14-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 210 728 7.7E-137 T 14-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 348 359 - T 14-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 PRINTS PR00107 Phosphocarrier protein signature 47 63 8.7E-6 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 PRINTS PR00107 Phosphocarrier protein signature 74 89 8.7E-6 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 PRINTS PR00107 Phosphocarrier protein signature 89 106 8.7E-6 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 Gene3D G3DSA:3.30.1340.10 37 121 3.7E-12 T 14-10-2018 IPR035895 HPr-like superfamily YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 Gene3D G3DSA:3.50.30.10 157 392 9.9E-38 T 14-10-2018 YP_3776 e8d829f8fe1bfa39896d364ff7f1152b 885 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 611 629 - T 14-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 YP_3793 b2dee2a004ce34e19ba46657513afb42 438 Pfam PF10117 McrBC 5-methylcytosine restriction system component 65 388 1.2E-101 T 14-10-2018 IPR019292 5-methylcytosine restriction system component YP_1486 2455053a6906736a69ca40bce64bc56b 69 SUPERFAMILY SSF50249 3 68 2.06E-26 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_1486 2455053a6906736a69ca40bce64bc56b 69 PIRSF PIRSF002599 1 69 6.3E-26 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 YP_1486 2455053a6906736a69ca40bce64bc56b 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 1.8E-33 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1486 2455053a6906736a69ca40bce64bc56b 69 Gene3D G3DSA:2.40.50.140 1 69 1.8E-32 T 14-10-2018 YP_1486 2455053a6906736a69ca40bce64bc56b 69 SMART SM00357 5 69 8.3E-32 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 YP_1486 2455053a6906736a69ca40bce64bc56b 69 PRINTS PR00050 Cold shock protein signature 42 60 1.1E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1486 2455053a6906736a69ca40bce64bc56b 69 PRINTS PR00050 Cold shock protein signature 27 36 1.1E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1486 2455053a6906736a69ca40bce64bc56b 69 PRINTS PR00050 Cold shock protein signature 6 21 1.1E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1486 2455053a6906736a69ca40bce64bc56b 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 14-10-2018 IPR019844 Cold-shock conserved site YP_2386 971a4c7606447613a6e846e75eee1033 304 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 5 295 1.2E-114 T 14-10-2018 IPR010099 Epimerase family protein SDR39U1 YP_2386 971a4c7606447613a6e846e75eee1033 304 Pfam PF08338 Domain of unknown function (DUF1731) 252 298 1.7E-19 T 14-10-2018 IPR013549 Domain of unknown function DUF1731 YP_2386 971a4c7606447613a6e846e75eee1033 304 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 217 9.5E-19 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YP_2386 971a4c7606447613a6e846e75eee1033 304 SUPERFAMILY SSF51735 3 300 8.34E-42 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2386 971a4c7606447613a6e846e75eee1033 304 Gene3D G3DSA:3.40.50.720 4 302 2.6E-75 T 14-10-2018 YP_3827 5f5ddb2b6235c3518023b5c37c15cf47 207 Gene3D G3DSA:3.10.450.710 21 201 7.7E-41 T 14-10-2018 YP_3827 5f5ddb2b6235c3518023b5c37c15cf47 207 Pfam PF05494 MlaC protein 31 195 8.5E-52 T 14-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC YP_3827 5f5ddb2b6235c3518023b5c37c15cf47 207 PIRSF PIRSF004649 1 207 2.6E-58 T 14-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC YP_2150 7b7fff568397093237595fdb2e8b559b 517 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 168 180 - T 14-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 YP_2150 7b7fff568397093237595fdb2e8b559b 517 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 33 502 1.2E-137 T 14-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 YP_2150 7b7fff568397093237595fdb2e8b559b 517 Gene3D G3DSA:1.20.1250.20 27 503 4.3E-111 T 14-10-2018 YP_2150 7b7fff568397093237595fdb2e8b559b 517 Hamap MF_01878 Dipeptide and tripeptide permease A [dtpA]. 17 506 51.957 T 14-10-2018 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A GO:0006857|GO:0016020|GO:1904680 YP_2150 7b7fff568397093237595fdb2e8b559b 517 Pfam PF00854 POT family 105 461 7.5E-88 T 14-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 YP_2150 7b7fff568397093237595fdb2e8b559b 517 SUPERFAMILY SSF103473 34 506 4.36E-28 T 14-10-2018 IPR036259 MFS transporter superfamily YP_3395 53fcd0990cf6b363573118d02e137823 397 Gene3D G3DSA:3.30.160.390 1 88 2.3E-32 T 14-10-2018 IPR038488 Integrase, DNA-binding domain superfamily YP_3395 53fcd0990cf6b363573118d02e137823 397 Pfam PF00589 Phage integrase family 206 370 8.3E-25 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YP_3395 53fcd0990cf6b363573118d02e137823 397 Gene3D G3DSA:1.10.150.130 89 202 7.4E-34 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal YP_3395 53fcd0990cf6b363573118d02e137823 397 Gene3D G3DSA:1.10.443.10 203 385 4.1E-18 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YP_3395 53fcd0990cf6b363573118d02e137823 397 SUPERFAMILY SSF56349 99 380 5.0E-64 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YP_3395 53fcd0990cf6b363573118d02e137823 397 Pfam PF13356 Arm DNA-binding domain 3 88 2.6E-19 T 14-10-2018 IPR025166 Integrase, DNA-binding domain YP_2937 415e3db1690142a5a3f81ac19dfcd479 349 SUPERFAMILY SSF111369 125 263 1.05E-8 T 14-10-2018 YP_2937 415e3db1690142a5a3f81ac19dfcd479 349 Gene3D G3DSA:2.40.30.170 228 347 3.6E-27 T 14-10-2018 YP_2937 415e3db1690142a5a3f81ac19dfcd479 349 Pfam PF13437 HlyD family secretion protein 214 329 5.5E-10 T 14-10-2018 YP_2937 415e3db1690142a5a3f81ac19dfcd479 349 Gene3D G3DSA:1.10.287.470 120 187 3.7E-6 T 14-10-2018 YP_2937 415e3db1690142a5a3f81ac19dfcd479 349 SUPERFAMILY SSF111369 50 111 4.97E-10 T 14-10-2018 YP_2937 415e3db1690142a5a3f81ac19dfcd479 349 Gene3D G3DSA:1.10.287.470 85 111 9.1E-12 T 14-10-2018 YP_2937 415e3db1690142a5a3f81ac19dfcd479 349 Pfam PF13533 Biotin-lipoyl like 51 99 6.7E-14 T 14-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YP_2937 415e3db1690142a5a3f81ac19dfcd479 349 Gene3D G3DSA:2.40.50.100 50 84 9.1E-12 T 14-10-2018 YP_3853 529104ba77f8c1a00b255a32b7a43f59 182 SUPERFAMILY SSF158710 36 179 1.44E-52 T 14-10-2018 IPR023153 PSPTO4464-like domain superfamily YP_3853 529104ba77f8c1a00b255a32b7a43f59 182 Pfam PF04751 Protein of unknown function (DUF615) 25 175 9.2E-57 T 14-10-2018 IPR006839 Ribosome-associated, YjgA YP_3853 529104ba77f8c1a00b255a32b7a43f59 182 Gene3D G3DSA:1.10.60.30 111 182 2.4E-29 T 14-10-2018 YP_3853 529104ba77f8c1a00b255a32b7a43f59 182 PIRSF PIRSF016183 9 182 3.8E-73 T 14-10-2018 IPR006839 Ribosome-associated, YjgA YP_3853 529104ba77f8c1a00b255a32b7a43f59 182 Gene3D G3DSA:1.10.60.30 35 109 2.0E-21 T 14-10-2018 YP_3853 529104ba77f8c1a00b255a32b7a43f59 182 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 15 179 24.021 T 14-10-2018 IPR006839 Ribosome-associated, YjgA YP_2308 d89bfa2aee5edcf5be9a01ab2f38e069 402 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 212 400 4.9E-21 T 14-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 YP_2308 d89bfa2aee5edcf5be9a01ab2f38e069 402 SUPERFAMILY SSF50022 46 188 7.46E-46 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 YP_2308 d89bfa2aee5edcf5be9a01ab2f38e069 402 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 59 84 1.6E-23 T 14-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 YP_2308 d89bfa2aee5edcf5be9a01ab2f38e069 402 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 110 130 1.6E-23 T 14-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 YP_2308 d89bfa2aee5edcf5be9a01ab2f38e069 402 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 89 104 1.6E-23 T 14-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 YP_2308 d89bfa2aee5edcf5be9a01ab2f38e069 402 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 172 198 1.6E-23 T 14-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 YP_2308 d89bfa2aee5edcf5be9a01ab2f38e069 402 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 131 151 1.6E-23 T 14-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 YP_2308 d89bfa2aee5edcf5be9a01ab2f38e069 402 Gene3D G3DSA:3.90.380.10 188 271 2.5E-12 T 14-10-2018 YP_2308 d89bfa2aee5edcf5be9a01ab2f38e069 402 Gene3D G3DSA:3.90.380.10 272 402 3.5E-6 T 14-10-2018 YP_2308 d89bfa2aee5edcf5be9a01ab2f38e069 402 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 117 140 - T 14-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 YP_2308 d89bfa2aee5edcf5be9a01ab2f38e069 402 Gene3D G3DSA:2.102.10.10 72 187 7.3E-37 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 YP_2308 d89bfa2aee5edcf5be9a01ab2f38e069 402 Pfam PF00355 Rieske [2Fe-2S] domain 74 162 2.1E-19 T 14-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 YP_2308 d89bfa2aee5edcf5be9a01ab2f38e069 402 Hamap MF_02097 Carnitine monooxygenase oxygenase subunit. 29 401 75.728 T 14-10-2018 IPR039004 Carnitine monooxygenase oxygenase subunit GO:0009437|GO:0051537 YP_2308 d89bfa2aee5edcf5be9a01ab2f38e069 402 SUPERFAMILY SSF55961 188 399 1.02E-34 T 14-10-2018 YP_1265 b36cbd6ee036dff2759a3de2cd9d447d 87 PRINTS PR00160 Glutaredoxin signature 66 79 4.5E-12 T 14-10-2018 IPR014025 Glutaredoxin subgroup YP_1265 b36cbd6ee036dff2759a3de2cd9d447d 87 PRINTS PR00160 Glutaredoxin signature 52 65 4.5E-12 T 14-10-2018 IPR014025 Glutaredoxin subgroup YP_1265 b36cbd6ee036dff2759a3de2cd9d447d 87 PRINTS PR00160 Glutaredoxin signature 3 21 4.5E-12 T 14-10-2018 IPR014025 Glutaredoxin subgroup YP_1265 b36cbd6ee036dff2759a3de2cd9d447d 87 Pfam PF00462 Glutaredoxin 4 69 1.6E-16 T 14-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 YP_1265 b36cbd6ee036dff2759a3de2cd9d447d 87 ProSitePatterns PS00195 Glutaredoxin active site. 5 20 - T 14-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 YP_1265 b36cbd6ee036dff2759a3de2cd9d447d 87 SUPERFAMILY SSF52833 4 81 6.26E-20 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_1265 b36cbd6ee036dff2759a3de2cd9d447d 87 TIGRFAM TIGR02183 GRXA: glutaredoxin, GrxA family 2 85 5.1E-50 T 14-10-2018 IPR011902 Glutaredoxin, GrxA GO:0009055|GO:0015035|GO:0045454 YP_1265 b36cbd6ee036dff2759a3de2cd9d447d 87 Gene3D G3DSA:3.40.30.10 3 85 4.4E-25 T 14-10-2018 YP_1840 5471ff4497bf34d72f896090120eaf0f 226 SUPERFAMILY SSF51735 7 213 5.46E-49 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1840 5471ff4497bf34d72f896090120eaf0f 226 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YP_1840 5471ff4497bf34d72f896090120eaf0f 226 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 4.2E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1840 5471ff4497bf34d72f896090120eaf0f 226 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 4.2E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1840 5471ff4497bf34d72f896090120eaf0f 226 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 4.2E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1840 5471ff4497bf34d72f896090120eaf0f 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 5.7E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1840 5471ff4497bf34d72f896090120eaf0f 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 5.7E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1840 5471ff4497bf34d72f896090120eaf0f 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 5.7E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1840 5471ff4497bf34d72f896090120eaf0f 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 5.7E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1840 5471ff4497bf34d72f896090120eaf0f 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 214 5.7E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1840 5471ff4497bf34d72f896090120eaf0f 226 Pfam PF00106 short chain dehydrogenase 7 189 2.7E-44 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1840 5471ff4497bf34d72f896090120eaf0f 226 Gene3D G3DSA:3.40.50.720 6 224 2.3E-52 T 14-10-2018 YP_0671 90b6e687ed1182c0eca44b9f4dce847f 465 Pfam PF01425 Amidase 28 445 1.1E-95 T 14-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 YP_0671 90b6e687ed1182c0eca44b9f4dce847f 465 Gene3D G3DSA:3.90.1300.10 4 460 1.6E-125 T 14-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 YP_0671 90b6e687ed1182c0eca44b9f4dce847f 465 SUPERFAMILY SSF75304 5 454 4.45E-128 T 14-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 YP_0671 90b6e687ed1182c0eca44b9f4dce847f 465 TIGRFAM TIGR02715 amido_AtzE: amidohydrolase, AtzE family 9 459 8.2E-239 T 14-10-2018 IPR014087 Amidohydrolase, AtzE type KEGG: 00791+3.5.1.84|MetaCyc: PWY-5169 YP_3784 d29d554336843d5cec0dca06fe8bf1ab 384 Pfam PF11795 Uncharacterized protein conserved in bacteria N-term (DUF3322) 4 186 1.5E-44 T 14-10-2018 IPR024537 Domain of unknown function DUF3322 YP_3784 d29d554336843d5cec0dca06fe8bf1ab 384 PIRSF PIRSF028408 1 384 8.7E-153 T 14-10-2018 IPR014544 Uncharacterised conserved protein UCP028408 YP_3784 d29d554336843d5cec0dca06fe8bf1ab 384 Pfam PF09983 Uncharacterized protein conserved in bacteria C-term(DUF2220) 206 375 1.0E-45 T 14-10-2018 IPR024534 Domain of unknown function DUF2220 YP_3081 3c86b118f14d153989f9bb2c67c91cff 461 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 16 461 2.7E-139 T 14-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YP_3081 3c86b118f14d153989f9bb2c67c91cff 461 SUPERFAMILY SSF55021 308 369 7.44E-14 T 14-10-2018 YP_3081 3c86b118f14d153989f9bb2c67c91cff 461 PIRSF PIRSF000726 14 461 2.1E-150 T 14-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YP_3081 3c86b118f14d153989f9bb2c67c91cff 461 Gene3D G3DSA:3.40.1160.10 18 301 1.3E-100 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YP_3081 3c86b118f14d153989f9bb2c67c91cff 461 SUPERFAMILY SSF53633 16 304 1.23E-73 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YP_3081 3c86b118f14d153989f9bb2c67c91cff 461 ProSitePatterns PS00324 Aspartokinase signature. 18 26 - T 14-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YP_3081 3c86b118f14d153989f9bb2c67c91cff 461 SUPERFAMILY SSF55021 389 460 1.72E-14 T 14-10-2018 YP_3081 3c86b118f14d153989f9bb2c67c91cff 461 Gene3D G3DSA:3.30.70.260 321 395 1.3E-49 T 14-10-2018 YP_3081 3c86b118f14d153989f9bb2c67c91cff 461 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 15 460 3.0E-131 T 14-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YP_3081 3c86b118f14d153989f9bb2c67c91cff 461 Gene3D G3DSA:1.20.120.1320 54 146 1.3E-100 T 14-10-2018 YP_3081 3c86b118f14d153989f9bb2c67c91cff 461 Gene3D G3DSA:3.30.70.260 315 458 1.3E-49 T 14-10-2018 YP_3081 3c86b118f14d153989f9bb2c67c91cff 461 Pfam PF00696 Amino acid kinase family 16 289 1.4E-45 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 YP_2679 e0b70fbbe533d889cbf2d152e56dff6f 150 ProDom PD021096 MEMBRANE YEAL PRECURSOR SIGNAL PROTEIN TRANSMEMBRANE YTWI HI1074 INTEGRAL SPANNING 21 132 1.0E-39 T 14-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame YP_2679 e0b70fbbe533d889cbf2d152e56dff6f 150 Hamap MF_01874 UPF0756 membrane protein YeaL [yeaL]. 5 150 18.832 T 14-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame YP_2679 e0b70fbbe533d889cbf2d152e56dff6f 150 Pfam PF04284 Protein of unknown function (DUF441) 9 147 2.1E-47 T 14-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame YP_0209 ca36d1e45dec6dd380e0b0a233ad91d0 100 Pfam PF00276 Ribosomal protein L23 9 95 2.3E-32 T 14-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 YP_0209 ca36d1e45dec6dd380e0b0a233ad91d0 100 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 23.063 T 14-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 YP_0209 ca36d1e45dec6dd380e0b0a233ad91d0 100 Gene3D G3DSA:3.30.70.330 1 100 1.7E-39 T 14-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YP_0209 ca36d1e45dec6dd380e0b0a233ad91d0 100 ProSitePatterns PS00050 Ribosomal protein L23 signature. 81 96 - T 14-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0209 ca36d1e45dec6dd380e0b0a233ad91d0 100 SUPERFAMILY SSF54189 3 92 5.76E-31 T 14-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_1733 3fa354fd56715eaab85e4eb816e1a089 259 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 182 251 3.8E-16 T 14-10-2018 IPR016148 Pili assembly chaperone, C-terminal YP_1733 3fa354fd56715eaab85e4eb816e1a089 259 SUPERFAMILY SSF49584 154 254 2.09E-18 T 14-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_1733 3fa354fd56715eaab85e4eb816e1a089 259 PRINTS PR00969 Pili chaperone signature 177 192 1.8E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1733 3fa354fd56715eaab85e4eb816e1a089 259 PRINTS PR00969 Pili chaperone signature 86 107 1.8E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1733 3fa354fd56715eaab85e4eb816e1a089 259 PRINTS PR00969 Pili chaperone signature 114 131 1.8E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1733 3fa354fd56715eaab85e4eb816e1a089 259 PRINTS PR00969 Pili chaperone signature 142 157 1.8E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1733 3fa354fd56715eaab85e4eb816e1a089 259 PRINTS PR00969 Pili chaperone signature 37 46 1.8E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1733 3fa354fd56715eaab85e4eb816e1a089 259 SUPERFAMILY SSF49354 32 160 4.97E-41 T 14-10-2018 IPR008962 PapD-like superfamily YP_1733 3fa354fd56715eaab85e4eb816e1a089 259 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 37 160 2.8E-44 T 14-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YP_1733 3fa354fd56715eaab85e4eb816e1a089 259 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 113 130 - T 14-10-2018 IPR018046 Pili assembly chaperone, conserved site YP_1733 3fa354fd56715eaab85e4eb816e1a089 259 Gene3D G3DSA:2.60.40.10 38 161 1.6E-42 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_1733 3fa354fd56715eaab85e4eb816e1a089 259 Gene3D G3DSA:2.60.40.10 165 259 6.6E-20 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3272 502143d9bba060312c92054fac12ce10 220 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 140 19.365 T 14-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 YP_3272 502143d9bba060312c92054fac12ce10 220 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 80 2.6E-32 T 14-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 YP_3272 502143d9bba060312c92054fac12ce10 220 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 2.2E-32 T 14-10-2018 YP_3272 502143d9bba060312c92054fac12ce10 220 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 2.2E-32 T 14-10-2018 YP_3272 502143d9bba060312c92054fac12ce10 220 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 2.2E-32 T 14-10-2018 YP_1784 ece6b82ad4856a09faefd01f62b5bc32 348 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 23 347 6.8E-150 T 14-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 YP_1784 ece6b82ad4856a09faefd01f62b5bc32 348 Gene3D G3DSA:3.40.50.720 142 285 1.6E-105 T 14-10-2018 YP_1784 ece6b82ad4856a09faefd01f62b5bc32 348 SUPERFAMILY SSF50129 23 161 1.67E-38 T 14-10-2018 IPR011032 GroES-like superfamily YP_1784 ece6b82ad4856a09faefd01f62b5bc32 348 SUPERFAMILY SSF51735 133 311 1.11E-50 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1784 ece6b82ad4856a09faefd01f62b5bc32 348 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 50 126 1.1E-9 T 14-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 YP_1784 ece6b82ad4856a09faefd01f62b5bc32 348 SMART SM00829 32 346 5.0E-57 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 YP_1784 ece6b82ad4856a09faefd01f62b5bc32 348 Gene3D G3DSA:3.90.180.10 36 346 1.6E-105 T 14-10-2018 YP_1784 ece6b82ad4856a09faefd01f62b5bc32 348 Pfam PF00107 Zinc-binding dehydrogenase 173 297 2.1E-26 T 14-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 YP_2612 6a4dd16d8a47720ed46cc0a1a28b4765 64 Pfam PF14282 FlxA-like protein 2 56 1.9E-12 T 14-10-2018 IPR025577 FlxA-like protein YP_0372 4a05d7cf0c8b7dcd334a309a99083b72 276 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 26 267 1.8E-36 T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YP_0372 4a05d7cf0c8b7dcd334a309a99083b72 276 SUPERFAMILY SSF52518 3 273 1.59E-72 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_0372 4a05d7cf0c8b7dcd334a309a99083b72 276 Gene3D G3DSA:3.40.50.970 3 276 1.2E-83 T 14-10-2018 YP_3683 acc43bccb901043231e2a9cd26919191 277 Pfam PF00226 DnaJ domain 214 273 2.1E-9 T 14-10-2018 IPR001623 DnaJ domain YP_3683 acc43bccb901043231e2a9cd26919191 277 Gene3D G3DSA:1.10.287.110 189 275 2.7E-13 T 14-10-2018 IPR036869 Chaperone J-domain superfamily YP_3683 acc43bccb901043231e2a9cd26919191 277 SUPERFAMILY SSF46565 132 273 5.75E-28 T 14-10-2018 IPR036869 Chaperone J-domain superfamily YP_3683 acc43bccb901043231e2a9cd26919191 277 Pfam PF05099 Tellurite resistance protein TerB 44 171 5.7E-12 T 14-10-2018 IPR007791 Co-chaperone DjlA, N-terminal YP_3683 acc43bccb901043231e2a9cd26919191 277 Gene3D G3DSA:1.10.3680.10 35 183 1.7E-20 T 14-10-2018 IPR029024 TerB-like YP_3683 acc43bccb901043231e2a9cd26919191 277 Hamap MF_01153 Co-chaperone protein DjlA [djlA]. 3 276 40.411 T 14-10-2018 IPR023749 Co-chaperone DjlA GO:0051087 YP_3683 acc43bccb901043231e2a9cd26919191 277 SMART SM00271 210 275 3.4E-15 T 14-10-2018 IPR001623 DnaJ domain YP_3683 acc43bccb901043231e2a9cd26919191 277 PRINTS PR00625 DnaJ domain signature 213 231 2.8E-6 T 14-10-2018 IPR001623 DnaJ domain YP_3683 acc43bccb901043231e2a9cd26919191 277 PRINTS PR00625 DnaJ domain signature 231 246 2.8E-6 T 14-10-2018 IPR001623 DnaJ domain YP_3683 acc43bccb901043231e2a9cd26919191 277 PRINTS PR00625 DnaJ domain signature 255 275 2.8E-6 T 14-10-2018 IPR001623 DnaJ domain YP_3259 3d6af388913c1889b443a69e3daefe5a 310 SUPERFAMILY SSF103481 208 287 8.24E-9 T 14-10-2018 YP_3259 3d6af388913c1889b443a69e3daefe5a 310 Pfam PF00892 EamA-like transporter family 11 140 2.6E-8 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_3259 3d6af388913c1889b443a69e3daefe5a 310 Pfam PF00892 EamA-like transporter family 149 285 1.1E-10 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_3259 3d6af388913c1889b443a69e3daefe5a 310 SUPERFAMILY SSF103481 46 142 9.94E-8 T 14-10-2018 YP_3259 3d6af388913c1889b443a69e3daefe5a 310 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 22 284 2.4E-83 T 14-10-2018 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 YP_1540 b0f919a79b9194d96f18494584bcadee 494 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 6 490 8.8E-229 T 14-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 YP_1540 b0f919a79b9194d96f18494584bcadee 494 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 419 439 - T 14-10-2018 IPR018212 Sodium/solute symporter, conserved site YP_1540 b0f919a79b9194d96f18494584bcadee 494 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 437 3.1E-123 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 YP_1540 b0f919a79b9194d96f18494584bcadee 494 Pfam PF00474 Sodium:solute symporter family 35 437 3.1E-139 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 YP_1540 b0f919a79b9194d96f18494584bcadee 494 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 14-10-2018 IPR018212 Sodium/solute symporter, conserved site YP_1540 b0f919a79b9194d96f18494584bcadee 494 Gene3D G3DSA:1.20.1730.10 23 493 3.9E-93 T 14-10-2018 IPR038377 Sodium/glucose symporter superfamily YP_3383 540025bc7d27be19070c427e6b506077 309 Pfam PF00892 EamA-like transporter family 162 293 2.9E-9 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_2738 c502c305122f16dfd032f2a63cc0960d 459 Pfam PF13742 OB-fold nucleic acid binding domain 10 103 1.1E-32 T 14-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 YP_2738 c502c305122f16dfd032f2a63cc0960d 459 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 11 359 7.4E-137 T 14-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 YP_2738 c502c305122f16dfd032f2a63cc0960d 459 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 7 443 30.293 T 14-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 YP_2738 c502c305122f16dfd032f2a63cc0960d 459 Pfam PF02601 Exonuclease VII, large subunit 126 440 1.4E-100 T 14-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 YP_3465 020e3f3f3f7905833a7503a2759efcf2 578 Pfam PF00691 OmpA family 447 543 6.5E-15 T 14-10-2018 IPR006665 OmpA-like domain YP_3465 020e3f3f3f7905833a7503a2759efcf2 578 Gene3D G3DSA:3.30.1330.60 436 557 2.2E-28 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_3465 020e3f3f3f7905833a7503a2759efcf2 578 SUPERFAMILY SSF103088 427 548 2.22E-29 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_0524 61e713807e3248faa9b5f160d6405d58 504 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 20 219 8.1E-49 T 14-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 YP_0524 61e713807e3248faa9b5f160d6405d58 504 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 234 503 23.404 T 14-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 YP_0524 61e713807e3248faa9b5f160d6405d58 504 Gene3D G3DSA:3.40.50.10260 15 224 2.8E-54 T 14-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 YP_0524 61e713807e3248faa9b5f160d6405d58 504 PIRSF PIRSF017184 15 504 5.7E-142 T 14-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 YP_0524 61e713807e3248faa9b5f160d6405d58 504 SUPERFAMILY SSF53613 232 499 1.08E-76 T 14-10-2018 IPR029056 Ribokinase-like YP_0524 61e713807e3248faa9b5f160d6405d58 504 Pfam PF01256 Carbohydrate kinase 258 495 1.2E-68 T 14-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 YP_0524 61e713807e3248faa9b5f160d6405d58 504 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 19 220 21.456 T 14-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 YP_0524 61e713807e3248faa9b5f160d6405d58 504 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 232 499 1.2E-81 T 14-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 YP_0524 61e713807e3248faa9b5f160d6405d58 504 SUPERFAMILY SSF64153 16 256 3.53E-60 T 14-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 YP_0524 61e713807e3248faa9b5f160d6405d58 504 Gene3D G3DSA:3.40.1190.20 226 500 2.1E-87 T 14-10-2018 IPR029056 Ribokinase-like YP_0524 61e713807e3248faa9b5f160d6405d58 504 Pfam PF03853 YjeF-related protein N-terminus 40 199 6.2E-39 T 14-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 YP_0218 befa1f16cd3678b4fd32cb80030666d8 104 SMART SM00739 4 31 9.8E-4 T 14-10-2018 IPR005824 KOW YP_0218 befa1f16cd3678b4fd32cb80030666d8 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 14-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0218 befa1f16cd3678b4fd32cb80030666d8 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 97 19.948 T 14-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0218 befa1f16cd3678b4fd32cb80030666d8 104 Pfam PF00467 KOW motif 8 37 7.7E-5 T 14-10-2018 IPR005824 KOW YP_0218 befa1f16cd3678b4fd32cb80030666d8 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 103 2.3E-39 T 14-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0218 befa1f16cd3678b4fd32cb80030666d8 104 SUPERFAMILY SSF50104 4 101 5.54E-33 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily YP_0218 befa1f16cd3678b4fd32cb80030666d8 104 Gene3D G3DSA:2.30.30.30 2 104 1.9E-40 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 YP_0218 befa1f16cd3678b4fd32cb80030666d8 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 103 3.7E-23 T 14-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2269 3566956dfd0fd14cac8d4fc620fddd92 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 202 6.9E-13 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2269 3566956dfd0fd14cac8d4fc620fddd92 213 SMART SM00421 149 206 1.1E-7 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2269 3566956dfd0fd14cac8d4fc620fddd92 213 Gene3D G3DSA:1.10.10.10 121 209 3.0E-12 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2269 3566956dfd0fd14cac8d4fc620fddd92 213 SUPERFAMILY SSF46894 143 207 3.13E-14 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_2558 016289aea7b84733f52b32c0e428a3c0 409 PIRSF PIRSF005572 7 389 6.1E-137 T 14-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 YP_2558 016289aea7b84733f52b32c0e428a3c0 409 Pfam PF00266 Aminotransferase class-V 10 373 4.0E-88 T 14-10-2018 IPR000192 Aminotransferase class V domain YP_2558 016289aea7b84733f52b32c0e428a3c0 409 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 6 400 54.501 T 14-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 YP_2558 016289aea7b84733f52b32c0e428a3c0 409 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 6 409 4.3E-230 T 14-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 YP_2558 016289aea7b84733f52b32c0e428a3c0 409 Gene3D G3DSA:3.90.1150.10 10 381 8.4E-167 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_2558 016289aea7b84733f52b32c0e428a3c0 409 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 202 221 - T 14-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YP_2558 016289aea7b84733f52b32c0e428a3c0 409 Gene3D G3DSA:3.40.640.10 21 267 8.4E-167 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_2558 016289aea7b84733f52b32c0e428a3c0 409 SUPERFAMILY SSF53383 8 395 1.32E-114 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_1577 3e50fce6692f5ccf2d3d616ccafd6d1f 319 SUPERFAMILY SSF53613 1 302 7.33E-69 T 14-10-2018 IPR029056 Ribokinase-like YP_1577 3e50fce6692f5ccf2d3d616ccafd6d1f 319 Pfam PF00294 pfkB family carbohydrate kinase 1 294 3.7E-52 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB YP_1577 3e50fce6692f5ccf2d3d616ccafd6d1f 319 Gene3D G3DSA:3.40.1190.20 2 312 7.8E-70 T 14-10-2018 IPR029056 Ribokinase-like YP_1164 5bbb97cd3ece4421e16b2bf68a66603b 297 Gene3D G3DSA:1.10.10.10 2 87 7.3E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1164 5bbb97cd3ece4421e16b2bf68a66603b 297 Gene3D G3DSA:3.40.190.10 93 293 4.2E-49 T 14-10-2018 YP_1164 5bbb97cd3ece4421e16b2bf68a66603b 297 SUPERFAMILY SSF46785 5 89 1.57E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1164 5bbb97cd3ece4421e16b2bf68a66603b 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 3.2E-21 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_1164 5bbb97cd3ece4421e16b2bf68a66603b 297 Gene3D G3DSA:3.40.190.10 166 268 4.2E-49 T 14-10-2018 YP_1164 5bbb97cd3ece4421e16b2bf68a66603b 297 Pfam PF03466 LysR substrate binding domain 91 294 2.2E-37 T 14-10-2018 IPR005119 LysR, substrate-binding YP_1164 5bbb97cd3ece4421e16b2bf68a66603b 297 SUPERFAMILY SSF53850 92 294 2.17E-39 T 14-10-2018 YP_1164 5bbb97cd3ece4421e16b2bf68a66603b 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.4E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_1164 5bbb97cd3ece4421e16b2bf68a66603b 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.4E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_1164 5bbb97cd3ece4421e16b2bf68a66603b 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.4E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2900 396857136766410271ce534276ab9330 483 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 203 458 5.1E-70 T 14-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 YP_2900 396857136766410271ce534276ab9330 483 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 17 172 6.5E-28 T 14-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 YP_2900 396857136766410271ce534276ab9330 483 Gene3D G3DSA:3.40.50.720 3 265 2.6E-48 T 14-10-2018 YP_2900 396857136766410271ce534276ab9330 483 SUPERFAMILY SSF48179 273 482 5.78E-51 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_2900 396857136766410271ce534276ab9330 483 SUPERFAMILY SSF51735 2 263 2.09E-65 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2900 396857136766410271ce534276ab9330 483 Hamap MF_00670 Altronate oxidoreductase [uxaB]. 1 483 53.368 T 14-10-2018 IPR023668 Altronate oxidoreductase GO:0009026|GO:0055114 KEGG: 00040+1.1.1.58 YP_2900 396857136766410271ce534276ab9330 483 Gene3D G3DSA:1.10.1040.10 272 483 1.2E-61 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YP_0926 4c15ee05ff015a65a21f1ceb0b17f6bb 169 Hamap MF_00706 Ecotin [eco]. 4 169 41.115 T 14-10-2018 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria YP_0926 4c15ee05ff015a65a21f1ceb0b17f6bb 169 Pfam PF03974 Ecotin 36 159 2.0E-49 T 14-10-2018 IPR005658 Proteinase inhibitor I11, ecotin YP_0926 4c15ee05ff015a65a21f1ceb0b17f6bb 169 SUPERFAMILY SSF49772 32 167 4.45E-53 T 14-10-2018 IPR036198 Ecotin superfamily YP_0926 4c15ee05ff015a65a21f1ceb0b17f6bb 169 PIRSF PIRSF006865 1 169 6.0E-67 T 14-10-2018 IPR005658 Proteinase inhibitor I11, ecotin YP_0926 4c15ee05ff015a65a21f1ceb0b17f6bb 169 Gene3D G3DSA:2.60.40.550 22 169 4.6E-65 T 14-10-2018 YP_0418 77c160fff0bd6dc59de0c19fd9825f21 198 Pfam PF13327 Type III secretion system subunit 11 172 1.9E-64 T 14-10-2018 IPR025292 Type III secretion system protein YP_1002 7f49cc6200c1de1e495a8d5ae32bc862 81 Pfam PF09905 DNA-binding protein VF530 7 68 7.9E-35 T 14-10-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 YP_1002 7f49cc6200c1de1e495a8d5ae32bc862 81 Gene3D G3DSA:1.10.720.30 14 73 3.2E-31 T 14-10-2018 IPR036361 SAP domain superfamily YP_3580 1cb1afc3a976bd9cb74d6e378a11db15 98 Pfam PF15723 Motility quorum-sensing regulator, toxin of MqsA 5 97 1.4E-30 T 14-10-2018 IPR031451 mRNA interferase toxin MqsR GO:0009372|GO:0017148|GO:0044010 YP_3580 1cb1afc3a976bd9cb74d6e378a11db15 98 Gene3D G3DSA:3.30.2310.40 1 98 2.2E-37 T 14-10-2018 IPR038493 Toxin MqsR superfamily YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 Gene3D G3DSA:3.30.2090.10 188 278 1.0E-293 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 Pfam PF00873 AcrB/AcrD/AcrF family 13 1022 0.0 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 PRINTS PR00702 Acriflavin resistance protein family signature 47 65 3.1E-81 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 3.1E-81 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 PRINTS PR00702 Acriflavin resistance protein family signature 19 43 3.1E-81 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 3.1E-81 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 3.1E-81 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 3.1E-81 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 3.1E-81 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 3.1E-81 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 3.1E-81 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 Gene3D G3DSA:3.30.70.1430 567 662 1.0E-293 T 14-10-2018 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 SUPERFAMILY SSF82693 49 142 4.71E-23 T 14-10-2018 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 Gene3D G3DSA:1.20.1640.10 513 1019 1.0E-293 T 14-10-2018 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 Gene3D G3DSA:3.30.70.1320 144 335 1.0E-293 T 14-10-2018 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 Gene3D G3DSA:3.30.2090.10 715 803 1.0E-293 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 SUPERFAMILY SSF82714 719 802 1.31E-15 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 Hamap MF_01423 Multidrug resistance protein MdtB [mdtB]. 1 1037 34.887 T 14-10-2018 IPR022831 Multidrug resistance protein MdtB YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 Gene3D G3DSA:3.30.70.1430 49 811 1.0E-293 T 14-10-2018 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 SUPERFAMILY SSF82866 299 498 3.14E-46 T 14-10-2018 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 SUPERFAMILY SSF82693 146 333 1.1E-19 T 14-10-2018 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 SUPERFAMILY SSF82693 565 662 1.92E-16 T 14-10-2018 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 SUPERFAMILY SSF82866 799 1025 9.55E-47 T 14-10-2018 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 Gene3D G3DSA:3.30.70.1440 663 861 1.0E-293 T 14-10-2018 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 Gene3D G3DSA:1.20.1640.10 19 512 1.0E-293 T 14-10-2018 YP_2715 afef9c4f1ac62d2db1407c7a3bf4616a 1052 SUPERFAMILY SSF82714 192 275 3.27E-16 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_0916 2f9d1c314bdccb2b07d8097a911f1f3a 374 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 326 342 - T 14-10-2018 IPR013793 Porin, Gram-negative type, conserved site YP_0916 2f9d1c314bdccb2b07d8097a911f1f3a 374 Pfam PF00267 Gram-negative porin 30 374 2.8E-139 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_0916 2f9d1c314bdccb2b07d8097a911f1f3a 374 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 238 250 3.3E-15 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_0916 2f9d1c314bdccb2b07d8097a911f1f3a 374 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 100 110 3.3E-15 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_0916 2f9d1c314bdccb2b07d8097a911f1f3a 374 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 156 167 3.3E-15 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_0916 2f9d1c314bdccb2b07d8097a911f1f3a 374 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 326 343 3.3E-15 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_0916 2f9d1c314bdccb2b07d8097a911f1f3a 374 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 55 66 3.3E-15 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_0916 2f9d1c314bdccb2b07d8097a911f1f3a 374 SUPERFAMILY SSF56935 25 374 1.65E-85 T 14-10-2018 YP_0916 2f9d1c314bdccb2b07d8097a911f1f3a 374 PRINTS PR00183 E.coli/Salmonella-type porin signature 54 72 3.5E-68 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_0916 2f9d1c314bdccb2b07d8097a911f1f3a 374 PRINTS PR00183 E.coli/Salmonella-type porin signature 244 261 3.5E-68 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_0916 2f9d1c314bdccb2b07d8097a911f1f3a 374 PRINTS PR00183 E.coli/Salmonella-type porin signature 282 301 3.5E-68 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_0916 2f9d1c314bdccb2b07d8097a911f1f3a 374 PRINTS PR00183 E.coli/Salmonella-type porin signature 25 41 3.5E-68 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_0916 2f9d1c314bdccb2b07d8097a911f1f3a 374 PRINTS PR00183 E.coli/Salmonella-type porin signature 100 122 3.5E-68 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_0916 2f9d1c314bdccb2b07d8097a911f1f3a 374 PRINTS PR00183 E.coli/Salmonella-type porin signature 154 176 3.5E-68 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_0916 2f9d1c314bdccb2b07d8097a911f1f3a 374 Gene3D G3DSA:2.40.160.10 25 374 9.3E-154 T 14-10-2018 IPR023614 Porin domain superfamily YP_0161 b7aef51668276be5b57b6362177e07fc 268 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 20 250 6.9E-80 T 14-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 YP_0161 b7aef51668276be5b57b6362177e07fc 268 Pfam PF01226 Formate/nitrite transporter 18 247 1.3E-56 T 14-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 YP_0161 b7aef51668276be5b57b6362177e07fc 268 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 157 167 - T 14-10-2018 IPR024002 Formate/nitrite transporter, conserved site YP_0161 b7aef51668276be5b57b6362177e07fc 268 Gene3D G3DSA:1.20.1080.10 1 258 9.8E-92 T 14-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 YP_0161 b7aef51668276be5b57b6362177e07fc 268 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 73 82 - T 14-10-2018 IPR024002 Formate/nitrite transporter, conserved site YP_2650 7c0a799586661845d41f86f6a7d1ede5 137 SUPERFAMILY SSF101756 40 135 1.96E-35 T 14-10-2018 IPR036700 Bacterial OB-fold superfamily YP_2650 7c0a799586661845d41f86f6a7d1ede5 137 TIGRFAM TIGR00156 TIGR00156: TIGR00156 family protein 2 136 3.3E-40 T 14-10-2018 IPR016052 Bacteriophage 933W, L0136 YP_2650 7c0a799586661845d41f86f6a7d1ede5 137 Pfam PF04076 Bacterial OB fold (BOF) protein 30 135 2.0E-35 T 14-10-2018 IPR005220 Bacterial OB-fold YP_2650 7c0a799586661845d41f86f6a7d1ede5 137 Gene3D G3DSA:2.40.50.200 27 137 1.2E-42 T 14-10-2018 IPR036700 Bacterial OB-fold superfamily YP_0545 4f15fa63384c41e4a50f109311453b3f 150 Gene3D G3DSA:3.40.5.10 1 50 5.1E-25 T 14-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0545 4f15fa63384c41e4a50f109311453b3f 150 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 149 25.329 T 14-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0545 4f15fa63384c41e4a50f109311453b3f 150 SUPERFAMILY SSF55658 1 57 4.01E-19 T 14-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal YP_0545 4f15fa63384c41e4a50f109311453b3f 150 Gene3D G3DSA:3.10.430.100 61 149 3.4E-30 T 14-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily YP_0545 4f15fa63384c41e4a50f109311453b3f 150 SUPERFAMILY SSF55653 60 149 1.83E-25 T 14-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily YP_0545 4f15fa63384c41e4a50f109311453b3f 150 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 45 5.5E-22 T 14-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0545 4f15fa63384c41e4a50f109311453b3f 150 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 149 5.5E-58 T 14-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0545 4f15fa63384c41e4a50f109311453b3f 150 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 14-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0545 4f15fa63384c41e4a50f109311453b3f 150 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 147 4.4E-25 T 14-10-2018 IPR020069 Ribosomal protein L9, C-terminal YP_3387 489483fdc0b9a76f108411230afb8a53 341 Gene3D G3DSA:1.10.3470.10 24 340 1.2E-42 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_3387 489483fdc0b9a76f108411230afb8a53 341 SUPERFAMILY SSF81345 32 337 1.57E-43 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_3387 489483fdc0b9a76f108411230afb8a53 341 Pfam PF01032 FecCD transport family 55 337 1.4E-42 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YP_2993 af9d6c7644445b29d75af4559d1832ac 385 Gene3D G3DSA:1.20.1090.10 183 385 6.7E-48 T 14-10-2018 YP_2993 af9d6c7644445b29d75af4559d1832ac 385 SUPERFAMILY SSF56796 1 384 1.22E-107 T 14-10-2018 YP_2993 af9d6c7644445b29d75af4559d1832ac 385 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 171 199 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 YP_2993 af9d6c7644445b29d75af4559d1832ac 385 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 262 282 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 YP_2993 af9d6c7644445b29d75af4559d1832ac 385 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 358 8.0E-90 T 14-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 YP_2993 af9d6c7644445b29d75af4559d1832ac 385 Gene3D G3DSA:3.40.50.1970 1 182 1.1E-48 T 14-10-2018 YP_1570 1647020aaf1d0ca65b78922adaf55f9e 138 Gene3D G3DSA:2.30.330.10 48 138 3.7E-34 T 14-10-2018 IPR036429 SpoA-like superfamily YP_1570 1647020aaf1d0ca65b78922adaf55f9e 138 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 57 127 1.1E-25 T 14-10-2018 IPR001543 Surface presentation of antigen (SpoA) YP_1570 1647020aaf1d0ca65b78922adaf55f9e 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 90 103 3.7E-30 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YP_1570 1647020aaf1d0ca65b78922adaf55f9e 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 103 118 3.7E-30 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YP_1570 1647020aaf1d0ca65b78922adaf55f9e 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 57 73 3.7E-30 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YP_1570 1647020aaf1d0ca65b78922adaf55f9e 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 74 90 3.7E-30 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YP_1570 1647020aaf1d0ca65b78922adaf55f9e 138 Pfam PF16973 Flagellar motor switch protein FliN N-terminal 1 50 3.2E-24 T 14-10-2018 IPR031576 Flagellar motor switch protein FliN, N-terminal YP_1570 1647020aaf1d0ca65b78922adaf55f9e 138 SUPERFAMILY SSF101801 55 136 1.83E-26 T 14-10-2018 IPR036429 SpoA-like superfamily YP_1570 1647020aaf1d0ca65b78922adaf55f9e 138 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 54 129 2.7E-33 T 14-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 YP_3810 de95ee927aa1453fe4de57ffa219c340 329 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 28 321 2.8E-133 T 14-10-2018 IPR005911 Protein YhcC-like GO:0051536 YP_3810 de95ee927aa1453fe4de57ffa219c340 329 Pfam PF16199 Radical_SAM C-terminal domain 230 303 4.3E-18 T 14-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 YP_3810 de95ee927aa1453fe4de57ffa219c340 329 SUPERFAMILY SSF102114 35 276 7.46E-45 T 14-10-2018 YP_3810 de95ee927aa1453fe4de57ffa219c340 329 SMART SM00729 45 269 1.5E-39 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 YP_3810 de95ee927aa1453fe4de57ffa219c340 329 Gene3D G3DSA:3.80.30.20 64 292 5.1E-17 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe YP_3810 de95ee927aa1453fe4de57ffa219c340 329 Pfam PF04055 Radical SAM superfamily 65 224 9.0E-16 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YP_3628 742736e1c497b5b9cc5c8bea43cbb97a 507 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 37 491 2.3E-182 T 14-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3628 742736e1c497b5b9cc5c8bea43cbb97a 507 SUPERFAMILY SSF51984 36 122 9.42E-29 T 14-10-2018 YP_3628 742736e1c497b5b9cc5c8bea43cbb97a 507 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 35 497 43.638 T 14-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YP_3628 742736e1c497b5b9cc5c8bea43cbb97a 507 SUPERFAMILY SSF53244 339 493 2.56E-46 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YP_3628 742736e1c497b5b9cc5c8bea43cbb97a 507 Pfam PF08245 Mur ligase middle domain 140 320 3.5E-27 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 YP_3628 742736e1c497b5b9cc5c8bea43cbb97a 507 Gene3D G3DSA:3.40.50.720 36 123 3.8E-34 T 14-10-2018 YP_3628 742736e1c497b5b9cc5c8bea43cbb97a 507 Pfam PF01225 Mur ligase family, catalytic domain 37 135 8.3E-30 T 14-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 YP_3628 742736e1c497b5b9cc5c8bea43cbb97a 507 SUPERFAMILY SSF53623 121 338 1.7E-74 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YP_3628 742736e1c497b5b9cc5c8bea43cbb97a 507 Gene3D G3DSA:3.40.1190.10 124 338 7.7E-88 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YP_3628 742736e1c497b5b9cc5c8bea43cbb97a 507 Pfam PF02875 Mur ligase family, glutamate ligase domain 349 434 1.8E-20 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 YP_3628 742736e1c497b5b9cc5c8bea43cbb97a 507 Gene3D G3DSA:3.90.190.20 339 507 4.0E-52 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YP_pMT066 0e9afac955ab37e6e03146f1b6479559 358 Pfam PF00154 recA bacterial DNA recombination protein 15 281 3.7E-43 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YP_pMT066 0e9afac955ab37e6e03146f1b6479559 358 Gene3D G3DSA:3.40.50.300 25 340 1.0E-69 T 14-10-2018 YP_pMT066 0e9afac955ab37e6e03146f1b6479559 358 PRINTS PR00142 RecA protein signature 133 162 5.0E-8 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YP_pMT066 0e9afac955ab37e6e03146f1b6479559 358 PRINTS PR00142 RecA protein signature 261 290 5.0E-8 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YP_pMT066 0e9afac955ab37e6e03146f1b6479559 358 PRINTS PR00142 RecA protein signature 229 257 5.0E-8 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YP_pMT066 0e9afac955ab37e6e03146f1b6479559 358 SUPERFAMILY SSF52540 22 273 1.93E-24 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pMT012 2b3f731da8339aeaabc8a286cdeb3093 1413 Pfam PF09718 Lambda phage tail tape-measure protein (Tape_meas_lam_C) 1042 1107 5.8E-15 T 14-10-2018 IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal YP_pMT012 2b3f731da8339aeaabc8a286cdeb3093 1413 TIGRFAM TIGR02675 tape_meas_nterm: tape measure domain 227 301 7.4E-21 T 14-10-2018 IPR013491 Caudovirus, tape measure, N-terminal YP_1967 20b52da652f96112cd05929ed2250354 128 PRINTS PR00502 NUDIX hydrolase family signature 44 59 3.4E-8 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YP_1967 20b52da652f96112cd05929ed2250354 128 PRINTS PR00502 NUDIX hydrolase family signature 30 44 3.4E-8 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YP_1967 20b52da652f96112cd05929ed2250354 128 Gene3D G3DSA:3.90.79.10 1 128 4.3E-36 T 14-10-2018 YP_1967 20b52da652f96112cd05929ed2250354 128 Pfam PF00293 NUDIX domain 4 120 4.2E-17 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YP_1967 20b52da652f96112cd05929ed2250354 128 ProSitePatterns PS00893 Nudix box signature. 35 56 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YP_1967 20b52da652f96112cd05929ed2250354 128 SUPERFAMILY SSF55811 3 124 3.38E-32 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YP_pCD81 32d1cd5f7845cb4f6fdd8640547b9baf 219 SUPERFAMILY SSF69635 22 78 2.98E-32 T 14-10-2018 YP_pCD81 32d1cd5f7845cb4f6fdd8640547b9baf 219 Pfam PF03545 Yersinia virulence determinant (YopE) 127 195 6.9E-35 T 14-10-2018 IPR014773 Virulence factor YopE, GAP domain YP_pCD81 32d1cd5f7845cb4f6fdd8640547b9baf 219 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 22 35 2.5E-63 T 14-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 YP_pCD81 32d1cd5f7845cb4f6fdd8640547b9baf 219 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 85 102 2.5E-63 T 14-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 YP_pCD81 32d1cd5f7845cb4f6fdd8640547b9baf 219 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 127 144 2.5E-63 T 14-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 YP_pCD81 32d1cd5f7845cb4f6fdd8640547b9baf 219 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 200 217 2.5E-63 T 14-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 YP_pCD81 32d1cd5f7845cb4f6fdd8640547b9baf 219 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 41 58 2.5E-63 T 14-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 YP_pCD81 32d1cd5f7845cb4f6fdd8640547b9baf 219 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 175 193 2.5E-63 T 14-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 YP_pCD81 32d1cd5f7845cb4f6fdd8640547b9baf 219 Gene3D G3DSA:1.20.120.260 90 219 4.9E-59 T 14-10-2018 IPR037168 Virulence factor YopE, GAP domain superfamily YP_pCD81 32d1cd5f7845cb4f6fdd8640547b9baf 219 Pfam PF09020 YopE, N terminal 1 126 9.4E-85 T 14-10-2018 IPR015110 YopE, N-terminal domain GO:0050765 YP_pCD81 32d1cd5f7845cb4f6fdd8640547b9baf 219 SUPERFAMILY SSF47233 101 219 1.57E-49 T 14-10-2018 IPR037168 Virulence factor YopE, GAP domain superfamily YP_1713 6b592a6eddf829db93316fb328c81508 297 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 35 294 3.9E-128 T 14-10-2018 IPR010247 N-formylglutamate deformylase YP_1713 6b592a6eddf829db93316fb328c81508 297 Gene3D G3DSA:3.40.630.40 27 294 3.5E-68 T 14-10-2018 YP_1713 6b592a6eddf829db93316fb328c81508 297 Pfam PF05013 N-formylglutamate amidohydrolase 44 261 3.3E-63 T 14-10-2018 IPR007709 N-formylglutamate amidohydrolase YP_1713 6b592a6eddf829db93316fb328c81508 297 SUPERFAMILY SSF53187 34 293 1.17E-75 T 14-10-2018 YP_1205 18c957a55b1940538ef9527dc39726a7 622 Gene3D G3DSA:2.150.10.10 272 428 3.6E-7 T 14-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YP_1205 18c957a55b1940538ef9527dc39726a7 622 Gene3D G3DSA:3.30.1300.30 521 621 1.5E-13 T 14-10-2018 YP_1205 18c957a55b1940538ef9527dc39726a7 622 Pfam PF03895 YadA-like membrane anchor domain 568 620 1.8E-7 T 14-10-2018 IPR005594 YadA-like, C-terminal YP_1205 18c957a55b1940538ef9527dc39726a7 622 SUPERFAMILY SSF54523 533 620 3.14E-13 T 14-10-2018 YP_1904 354dd2ca3e9a889d232e83164216275f 318 Gene3D G3DSA:3.40.50.1980 29 205 7.9E-56 T 14-10-2018 YP_1904 354dd2ca3e9a889d232e83164216275f 318 Pfam PF01297 Zinc-uptake complex component A periplasmic 30 314 1.3E-56 T 14-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 YP_1904 354dd2ca3e9a889d232e83164216275f 318 Gene3D G3DSA:3.40.50.1980 207 318 2.0E-41 T 14-10-2018 YP_1904 354dd2ca3e9a889d232e83164216275f 318 SUPERFAMILY SSF53807 29 318 7.36E-78 T 14-10-2018 YP_1118 ff5f87032f00c4881ec1a4ce431210df 129 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 8 118 9.8E-25 T 14-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 YP_1118 ff5f87032f00c4881ec1a4ce431210df 129 TIGRFAM TIGR00494 crcB: protein CrcB 8 122 2.1E-38 T 14-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 YP_1118 ff5f87032f00c4881ec1a4ce431210df 129 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 7 124 19.106 T 14-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 YP_0112 20b23a19f8ee5acc41d588eb597a09de 71 SUPERFAMILY SSF143800 1 66 3.65E-26 T 14-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0112 20b23a19f8ee5acc41d588eb597a09de 71 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.3E-22 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0112 20b23a19f8ee5acc41d588eb597a09de 71 PRINTS PR01249 Ribosomal protein L31 signature 31 46 2.3E-22 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0112 20b23a19f8ee5acc41d588eb597a09de 71 PRINTS PR01249 Ribosomal protein L31 signature 46 64 2.3E-22 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0112 20b23a19f8ee5acc41d588eb597a09de 71 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 8.2E-33 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0112 20b23a19f8ee5acc41d588eb597a09de 71 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0112 20b23a19f8ee5acc41d588eb597a09de 71 Gene3D G3DSA:2.30.170.50 1 70 1.9E-32 T 14-10-2018 YP_0112 20b23a19f8ee5acc41d588eb597a09de 71 Pfam PF01197 Ribosomal protein L31 1 64 4.4E-29 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0112 20b23a19f8ee5acc41d588eb597a09de 71 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 30.069 T 14-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0453 1c4831979e7475713221c07618be7099 391 PIRSF PIRSF037118 1 391 9.6E-179 T 14-10-2018 IPR017115 Tellurite resistance, TerA YP_0453 1c4831979e7475713221c07618be7099 391 Gene3D G3DSA:2.60.60.30 12 155 3.5E-34 T 14-10-2018 YP_0453 1c4831979e7475713221c07618be7099 391 Pfam PF02342 TerD domain 22 156 2.4E-29 T 14-10-2018 IPR003325 TerD domain YP_2177 6b1b5770bffe93761951315ac498032d 218 Pfam PF00677 Lumazine binding domain 100 185 2.1E-21 T 14-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YP_2177 6b1b5770bffe93761951315ac498032d 218 Pfam PF00677 Lumazine binding domain 3 87 7.2E-22 T 14-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YP_2177 6b1b5770bffe93761951315ac498032d 218 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 202 3.9E-83 T 14-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YP_2177 6b1b5770bffe93761951315ac498032d 218 Gene3D G3DSA:2.40.30.20 1 89 2.2E-32 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_2177 6b1b5770bffe93761951315ac498032d 218 SUPERFAMILY SSF63380 93 199 3.83E-32 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YP_2177 6b1b5770bffe93761951315ac498032d 218 Gene3D G3DSA:2.40.30.20 94 191 1.2E-28 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_2177 6b1b5770bffe93761951315ac498032d 218 SUPERFAMILY SSF63380 1 93 2.21E-28 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YP_2177 6b1b5770bffe93761951315ac498032d 218 PIRSF PIRSF000498 1 212 1.1E-74 T 14-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YP_2506 c90a015eb503e7a8070a07af354d1e85 339 Pfam PF06166 Protein of unknown function (DUF979) 6 338 4.8E-130 T 14-10-2018 IPR009323 Protein of unknown function DUF979 YP_0907 c92f6cd5e3fa12f16bdbd2a0f462533e 159 Pfam PF06530 Phage antitermination protein Q 20 140 8.3E-41 T 14-10-2018 IPR010534 Bacteriophage 933W, GpQ GO:0003677|GO:0060567 YP_pCD32 537b6001f7dc2f94e91ddaff05ec7376 137 Pfam PF05932 Tir chaperone protein (CesT) family 4 121 7.5E-30 T 14-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 YP_pCD32 537b6001f7dc2f94e91ddaff05ec7376 137 Gene3D G3DSA:3.30.1460.10 1 127 2.0E-59 T 14-10-2018 YP_pCD32 537b6001f7dc2f94e91ddaff05ec7376 137 TIGRFAM TIGR02513 type_III_yscB: type III secretion system chaperone, YscB family 2 137 2.4E-60 T 14-10-2018 IPR013353 Type III secretion system chaperone YscB YP_pCD32 537b6001f7dc2f94e91ddaff05ec7376 137 SUPERFAMILY SSF69635 2 127 2.83E-46 T 14-10-2018 YP_0385 5768144724a11dff6d17c561ac837855 532 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 532 230.04 T 14-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 YP_0385 5768144724a11dff6d17c561ac837855 532 Gene3D G3DSA:3.30.590.20 30 530 8.7E-189 T 14-10-2018 YP_0385 5768144724a11dff6d17c561ac837855 532 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 19 527 5.6E-256 T 14-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 YP_0385 5768144724a11dff6d17c561ac837855 532 Pfam PF04262 Glutamate-cysteine ligase 23 393 2.4E-172 T 14-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 YP_0385 5768144724a11dff6d17c561ac837855 532 SUPERFAMILY SSF55931 17 527 9.81E-202 T 14-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 YP_0288 44b0d6114987c4d6c3fb6d4f0473db41 182 Gene3D G3DSA:1.20.120.910 51 181 3.1E-35 T 14-10-2018 YP_0288 44b0d6114987c4d6c3fb6d4f0473db41 182 SUPERFAMILY SSF109635 40 141 1.44E-36 T 14-10-2018 IPR037187 DksA, N-terminal domain superfamily YP_0288 44b0d6114987c4d6c3fb6d4f0473db41 182 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 142 174 4.3E-10 T 14-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 YP_0288 44b0d6114987c4d6c3fb6d4f0473db41 182 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 59 181 29.578 T 14-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 YP_0288 44b0d6114987c4d6c3fb6d4f0473db41 182 SUPERFAMILY SSF57716 142 180 8.13E-10 T 14-10-2018 YP_0288 44b0d6114987c4d6c3fb6d4f0473db41 182 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 145 169 - T 14-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site YP_0288 44b0d6114987c4d6c3fb6d4f0473db41 182 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 63 171 1.1E-50 T 14-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 YP_1722 6337442f81d7147f80128714089469d2 250 Gene3D G3DSA:2.60.40.10 35 151 1.8E-11 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_1722 6337442f81d7147f80128714089469d2 250 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 36 151 4.7E-19 T 14-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YP_1722 6337442f81d7147f80128714089469d2 250 SUPERFAMILY SSF49354 23 154 7.85E-27 T 14-10-2018 IPR008962 PapD-like superfamily YP_0259 a5fcdf846efa77e019f9562c4638bcf0 154 Pfam PF07963 Prokaryotic N-terminal methylation motif 10 31 2.0E-8 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site YP_0259 a5fcdf846efa77e019f9562c4638bcf0 154 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site YP_0259 a5fcdf846efa77e019f9562c4638bcf0 154 Gene3D G3DSA:3.30.700.10 13 150 1.3E-23 T 14-10-2018 YP_0259 a5fcdf846efa77e019f9562c4638bcf0 154 SUPERFAMILY SSF54523 34 144 9.94E-23 T 14-10-2018 YP_0259 a5fcdf846efa77e019f9562c4638bcf0 154 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 32 9.1E-10 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site YP_3651 af35ceab27951c2064d1d99188be7e75 499 ProSitePatterns PS00450 Aconitase family signature 1. 368 384 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 YP_3651 af35ceab27951c2064d1d99188be7e75 499 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 30 495 61.757 T 14-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 YP_3651 af35ceab27951c2064d1d99188be7e75 499 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 31 494 1.9E-266 T 14-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 YP_3651 af35ceab27951c2064d1d99188be7e75 499 SUPERFAMILY SSF53732 27 495 5.1E-169 T 14-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 YP_3651 af35ceab27951c2064d1d99188be7e75 499 Gene3D G3DSA:3.30.499.20 33 315 3.2E-100 T 14-10-2018 YP_3651 af35ceab27951c2064d1d99188be7e75 499 Pfam PF00330 Aconitase family (aconitate hydratase) 37 486 1.7E-161 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_3651 af35ceab27951c2064d1d99188be7e75 499 PRINTS PR00415 Aconitase family signature 111 124 4.7E-50 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_3651 af35ceab27951c2064d1d99188be7e75 499 PRINTS PR00415 Aconitase family signature 224 237 4.7E-50 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_3651 af35ceab27951c2064d1d99188be7e75 499 PRINTS PR00415 Aconitase family signature 372 383 4.7E-50 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_3651 af35ceab27951c2064d1d99188be7e75 499 PRINTS PR00415 Aconitase family signature 428 441 4.7E-50 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_3651 af35ceab27951c2064d1d99188be7e75 499 PRINTS PR00415 Aconitase family signature 148 161 4.7E-50 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_3651 af35ceab27951c2064d1d99188be7e75 499 PRINTS PR00415 Aconitase family signature 162 177 4.7E-50 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_3651 af35ceab27951c2064d1d99188be7e75 499 PRINTS PR00415 Aconitase family signature 315 329 4.7E-50 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_3651 af35ceab27951c2064d1d99188be7e75 499 PRINTS PR00415 Aconitase family signature 238 251 4.7E-50 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_3651 af35ceab27951c2064d1d99188be7e75 499 PRINTS PR00415 Aconitase family signature 137 145 4.7E-50 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_3651 af35ceab27951c2064d1d99188be7e75 499 Gene3D G3DSA:3.30.499.10 354 499 2.2E-51 T 14-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 YP_3651 af35ceab27951c2064d1d99188be7e75 499 ProSitePatterns PS01244 Aconitase family signature 2. 428 441 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 YP_1525 a4087fe5db72a6e4a1c05ad22fb2c7e9 192 SUPERFAMILY SSF56349 1 185 8.83E-33 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YP_1525 a4087fe5db72a6e4a1c05ad22fb2c7e9 192 Gene3D G3DSA:1.10.443.10 74 192 1.9E-13 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YP_1525 a4087fe5db72a6e4a1c05ad22fb2c7e9 192 Gene3D G3DSA:1.10.150.130 1 73 3.3E-9 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal YP_0624 70479a91ceed14c4c2e2ce9fea86bc3c 293 Pfam PF06007 Phosphonate metabolism protein PhnJ 7 278 2.2E-145 T 14-10-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YP_0624 70479a91ceed14c4c2e2ce9fea86bc3c 293 PIRSF PIRSF011468 1 288 3.0E-164 T 14-10-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YP_0072 0abe7111de3977959f985ca46013b38f 354 SUPERFAMILY SSF57884 6 88 1.16E-32 T 14-10-2018 IPR035451 Ada-like domain superfamily YP_0072 0abe7111de3977959f985ca46013b38f 354 SUPERFAMILY SSF46689 81 129 2.96E-8 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0072 0abe7111de3977959f985ca46013b38f 354 SUPERFAMILY SSF46767 265 347 1.07E-30 T 14-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 YP_0072 0abe7111de3977959f985ca46013b38f 354 Gene3D G3DSA:1.10.10.10 265 351 5.0E-34 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0072 0abe7111de3977959f985ca46013b38f 354 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 267 347 1.2E-31 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 YP_0072 0abe7111de3977959f985ca46013b38f 354 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 316 322 - T 14-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 YP_0072 0abe7111de3977959f985ca46013b38f 354 SUPERFAMILY SSF53155 186 264 9.42E-20 T 14-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 YP_0072 0abe7111de3977959f985ca46013b38f 354 Gene3D G3DSA:1.10.10.60 75 131 2.1E-22 T 14-10-2018 YP_0072 0abe7111de3977959f985ca46013b38f 354 Gene3D G3DSA:3.40.10.10 4 74 2.5E-32 T 14-10-2018 IPR035451 Ada-like domain superfamily YP_0072 0abe7111de3977959f985ca46013b38f 354 Pfam PF12833 Helix-turn-helix domain 102 179 1.3E-19 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_0072 0abe7111de3977959f985ca46013b38f 354 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 187 263 1.9E-5 T 14-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 YP_0072 0abe7111de3977959f985ca46013b38f 354 SMART SM00342 96 178 2.6E-22 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_0072 0abe7111de3977959f985ca46013b38f 354 Pfam PF02805 Metal binding domain of Ada 8 70 1.9E-32 T 14-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 YP_0072 0abe7111de3977959f985ca46013b38f 354 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 266 345 3.2E-35 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 YP_0072 0abe7111de3977959f985ca46013b38f 354 PIRSF PIRSF000409 1 354 4.3E-145 T 14-10-2018 IPR016221 Bifunctional regulatory protein Ada YP_0072 0abe7111de3977959f985ca46013b38f 354 Gene3D G3DSA:3.30.160.70 177 264 7.3E-32 T 14-10-2018 YP_0072 0abe7111de3977959f985ca46013b38f 354 Gene3D G3DSA:1.10.10.60 132 176 9.0E-7 T 14-10-2018 YP_3329 f96146007e5ebb7894cc6e2d9e6b7dcb 460 Gene3D G3DSA:1.10.8.260 324 384 2.0E-127 T 14-10-2018 IPR023166 HI0933-like insert domain superfamily YP_3329 f96146007e5ebb7894cc6e2d9e6b7dcb 460 Gene3D G3DSA:3.50.50.60 69 450 2.0E-127 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3329 f96146007e5ebb7894cc6e2d9e6b7dcb 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 67 89 5.4E-8 T 14-10-2018 YP_3329 f96146007e5ebb7894cc6e2d9e6b7dcb 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 217 226 5.4E-8 T 14-10-2018 YP_3329 f96146007e5ebb7894cc6e2d9e6b7dcb 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 424 431 5.4E-8 T 14-10-2018 YP_3329 f96146007e5ebb7894cc6e2d9e6b7dcb 460 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 68 454 3.3E-128 T 14-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like YP_3329 f96146007e5ebb7894cc6e2d9e6b7dcb 460 Pfam PF03486 HI0933-like protein 66 454 1.2E-156 T 14-10-2018 YP_3329 f96146007e5ebb7894cc6e2d9e6b7dcb 460 Gene3D G3DSA:2.40.30.10 250 401 2.0E-127 T 14-10-2018 YP_3329 f96146007e5ebb7894cc6e2d9e6b7dcb 460 SUPERFAMILY SSF51905 65 457 4.02E-58 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3329 f96146007e5ebb7894cc6e2d9e6b7dcb 460 SUPERFAMILY SSF160996 252 400 4.71E-43 T 14-10-2018 YP_3329 f96146007e5ebb7894cc6e2d9e6b7dcb 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 409 431 7.5E-5 T 14-10-2018 YP_3329 f96146007e5ebb7894cc6e2d9e6b7dcb 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 68 87 7.5E-5 T 14-10-2018 YP_0164 9e9d7a0391421067e1ca9fb395d5fcfd 436 SUPERFAMILY SSF51338 15 71 3.21E-6 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YP_0164 9e9d7a0391421067e1ca9fb395d5fcfd 436 Pfam PF07969 Amidohydrolase family 55 414 2.1E-53 T 14-10-2018 IPR013108 Amidohydrolase 3 YP_0164 9e9d7a0391421067e1ca9fb395d5fcfd 436 Gene3D G3DSA:2.30.40.10 22 420 5.0E-180 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YP_0164 9e9d7a0391421067e1ca9fb395d5fcfd 436 Gene3D G3DSA:3.20.20.140 67 374 5.0E-180 T 14-10-2018 YP_0164 9e9d7a0391421067e1ca9fb395d5fcfd 436 SUPERFAMILY SSF51556 66 385 2.92E-106 T 14-10-2018 IPR032466 Metal-dependent hydrolase YP_2833 aff30fb7fba6f986fddd08f8d1894e59 733 Gene3D G3DSA:2.40.128.130 425 733 1.2E-51 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_2833 aff30fb7fba6f986fddd08f8d1894e59 733 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 360 718 3.4E-14 T 14-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YP_2833 aff30fb7fba6f986fddd08f8d1894e59 733 SUPERFAMILY SSF103515 425 733 2.88E-41 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_2833 aff30fb7fba6f986fddd08f8d1894e59 733 Pfam PF03797 Autotransporter beta-domain 455 712 1.4E-46 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_2833 aff30fb7fba6f986fddd08f8d1894e59 733 SMART SM00869 452 723 1.1E-38 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_0831 7e6a1fcc893783cdb8f7ace4dcdde07d 434 SUPERFAMILY SSF53613 36 416 2.96E-45 T 14-10-2018 IPR029056 Ribokinase-like YP_0831 7e6a1fcc893783cdb8f7ace4dcdde07d 434 Pfam PF00294 pfkB family carbohydrate kinase 138 297 6.2E-9 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB YP_0959 c1a6b9b3c5c944f23121d91f496bf76a 179 TIGRFAM TIGR00318 cyaB: putative adenylyl cyclase CyaB 10 178 7.9E-17 T 14-10-2018 IPR008173 Adenylyl cyclase CyaB KEGG: 00230+4.6.1.1 YP_0959 c1a6b9b3c5c944f23121d91f496bf76a 179 ProDom PD009560 CYCLASE ADENYLATE CYCLASE ADENYLYL CYAB LYASE CLASS CYAB-TYPE THERMOPHILIC MJ0240 9 149 1.0E-8 T 14-10-2018 YP_0959 c1a6b9b3c5c944f23121d91f496bf76a 179 Pfam PF01928 CYTH domain 9 173 9.0E-23 T 14-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 YP_0959 c1a6b9b3c5c944f23121d91f496bf76a 179 SUPERFAMILY SSF55154 8 177 2.29E-38 T 14-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 YP_0959 c1a6b9b3c5c944f23121d91f496bf76a 179 SMART SM01118 8 179 7.2E-15 T 14-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 YP_0959 c1a6b9b3c5c944f23121d91f496bf76a 179 Gene3D G3DSA:2.40.320.10 1 179 6.0E-48 T 14-10-2018 YP_3176 dde0888154d14f12921e76554a1b3b4e 422 Gene3D G3DSA:3.40.50.300 227 393 1.5E-44 T 14-10-2018 YP_3176 dde0888154d14f12921e76554a1b3b4e 422 SUPERFAMILY SSF52540 84 363 9.34E-69 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3176 dde0888154d14f12921e76554a1b3b4e 422 SMART SM00490 270 351 4.5E-30 T 14-10-2018 IPR001650 Helicase, C-terminal YP_3176 dde0888154d14f12921e76554a1b3b4e 422 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 389 50.548 T 14-10-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 YP_3176 dde0888154d14f12921e76554a1b3b4e 422 Pfam PF00271 Helicase conserved C-terminal domain 243 351 2.4E-28 T 14-10-2018 IPR001650 Helicase, C-terminal YP_3176 dde0888154d14f12921e76554a1b3b4e 422 Pfam PF00270 DEAD/DEAH box helicase 33 206 5.7E-45 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YP_3176 dde0888154d14f12921e76554a1b3b4e 422 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YP_3176 dde0888154d14f12921e76554a1b3b4e 422 Gene3D G3DSA:3.40.50.300 2 222 6.3E-68 T 14-10-2018 YP_3176 dde0888154d14f12921e76554a1b3b4e 422 SMART SM00487 28 234 1.1E-50 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_0485 960b445f79adaadae6e37ae9fd9f8cb5 485 SUPERFAMILY SSF53067 2 240 1.1E-51 T 14-10-2018 YP_0485 960b445f79adaadae6e37ae9fd9f8cb5 485 PIRSF PIRSF000538 1 456 2.5E-46 T 14-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YP_0485 960b445f79adaadae6e37ae9fd9f8cb5 485 Hamap MF_01535 Rhamnulokinase [rhaB]. 1 478 54.744 T 14-10-2018 IPR013449 Rhamnulokinase GO:0008993|GO:0019301 KEGG: 00040+2.7.1.5|KEGG: 00051+2.7.1.5 YP_0485 960b445f79adaadae6e37ae9fd9f8cb5 485 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 248 430 4.3E-26 T 14-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YP_0485 960b445f79adaadae6e37ae9fd9f8cb5 485 Gene3D G3DSA:3.30.420.40 232 485 3.8E-96 T 14-10-2018 YP_0485 960b445f79adaadae6e37ae9fd9f8cb5 485 TIGRFAM TIGR02627 rhamnulo_kin: rhamnulokinase 2 455 6.6E-243 T 14-10-2018 IPR013449 Rhamnulokinase GO:0008993|GO:0019301 KEGG: 00040+2.7.1.5|KEGG: 00051+2.7.1.5 YP_0485 960b445f79adaadae6e37ae9fd9f8cb5 485 Gene3D G3DSA:3.30.420.40 1 231 3.0E-92 T 14-10-2018 YP_0485 960b445f79adaadae6e37ae9fd9f8cb5 485 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 1 238 5.3E-36 T 14-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YP_0485 960b445f79adaadae6e37ae9fd9f8cb5 485 SUPERFAMILY SSF53067 243 461 5.67E-34 T 14-10-2018 YP_0487 c5c3925fc76e26db44d9d549c924febe 273 Hamap MF_01534 HTH-type transcriptional activator RhaS [rhaS]. 1 273 56.976 T 14-10-2018 IPR023609 Transcription regulator HTH, RhaS GO:0003700|GO:0006355|GO:0019299 YP_0487 c5c3925fc76e26db44d9d549c924febe 273 SUPERFAMILY SSF46689 223 272 1.43E-12 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0487 c5c3925fc76e26db44d9d549c924febe 273 Gene3D G3DSA:1.10.10.60 166 273 3.6E-27 T 14-10-2018 YP_0487 c5c3925fc76e26db44d9d549c924febe 273 SMART SM00342 187 270 7.5E-28 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_0487 c5c3925fc76e26db44d9d549c924febe 273 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 224 266 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YP_0487 c5c3925fc76e26db44d9d549c924febe 273 SUPERFAMILY SSF46689 171 221 6.0E-7 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0487 c5c3925fc76e26db44d9d549c924febe 273 SUPERFAMILY SSF51215 17 157 7.06E-14 T 14-10-2018 IPR037923 Transcription regulator HTH-like YP_0487 c5c3925fc76e26db44d9d549c924febe 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 239 254 1.8E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_0487 c5c3925fc76e26db44d9d549c924febe 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 254 270 1.8E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_0487 c5c3925fc76e26db44d9d549c924febe 273 Pfam PF02311 AraC-like ligand binding domain 18 154 2.5E-25 T 14-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 YP_0487 c5c3925fc76e26db44d9d549c924febe 273 Pfam PF12833 Helix-turn-helix domain 193 271 6.7E-24 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_0487 c5c3925fc76e26db44d9d549c924febe 273 Gene3D G3DSA:2.60.120.10 3 85 8.0E-9 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_2429 a0b548a0c7567bb7cb6110f12dbddc21 228 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 14 224 1.9E-96 T 14-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria YP_2429 a0b548a0c7567bb7cb6110f12dbddc21 228 Pfam PF03379 CcmB protein 12 225 5.4E-93 T 14-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2429 a0b548a0c7567bb7cb6110f12dbddc21 228 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 84 107 8.7E-73 T 14-10-2018 YP_2429 a0b548a0c7567bb7cb6110f12dbddc21 228 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 109 127 8.7E-73 T 14-10-2018 YP_2429 a0b548a0c7567bb7cb6110f12dbddc21 228 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 164 183 8.7E-73 T 14-10-2018 YP_2429 a0b548a0c7567bb7cb6110f12dbddc21 228 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 201 224 8.7E-73 T 14-10-2018 YP_2429 a0b548a0c7567bb7cb6110f12dbddc21 228 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 35 56 8.7E-73 T 14-10-2018 YP_2429 a0b548a0c7567bb7cb6110f12dbddc21 228 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 61 78 8.7E-73 T 14-10-2018 YP_2429 a0b548a0c7567bb7cb6110f12dbddc21 228 PIRSF PIRSF002764 5 228 3.4E-87 T 14-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria YP_2963 de110ebfca0a4ad079cb4d7503c72fc6 91 Gene3D G3DSA:3.30.1130.10 1 91 4.3E-32 T 14-10-2018 YP_2963 de110ebfca0a4ad079cb4d7503c72fc6 91 SUPERFAMILY SSF55620 1 87 4.28E-24 T 14-10-2018 YP_2963 de110ebfca0a4ad079cb4d7503c72fc6 91 Pfam PF02152 Dihydroneopterin aldolase 1 85 9.1E-21 T 14-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 YP_2963 de110ebfca0a4ad079cb4d7503c72fc6 91 SMART SM00905 1 86 1.8E-22 T 14-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 YP_2963 de110ebfca0a4ad079cb4d7503c72fc6 91 TIGRFAM TIGR00526 folB_dom: FolB domain 1 89 3.4E-26 T 14-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 YP_1084 a3f7ce3d45810d2718f34b234a6f5e65 585 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 31 579 53.715 T 14-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 YP_1084 a3f7ce3d45810d2718f34b234a6f5e65 585 PRINTS PR00987 Glutamyl-tRNA synthetase signature 240 250 4.5E-8 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YP_1084 a3f7ce3d45810d2718f34b234a6f5e65 585 PRINTS PR00987 Glutamyl-tRNA synthetase signature 61 73 4.5E-8 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YP_1084 a3f7ce3d45810d2718f34b234a6f5e65 585 PRINTS PR00987 Glutamyl-tRNA synthetase signature 90 103 4.5E-8 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YP_1084 a3f7ce3d45810d2718f34b234a6f5e65 585 Gene3D G3DSA:2.40.240.10 378 492 2.4E-47 T 14-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YP_1084 a3f7ce3d45810d2718f34b234a6f5e65 585 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 64 75 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1084 a3f7ce3d45810d2718f34b234a6f5e65 585 Gene3D G3DSA:3.40.50.620 60 277 1.3E-106 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_1084 a3f7ce3d45810d2718f34b234a6f5e65 585 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 370 558 1.8E-62 T 14-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YP_1084 a3f7ce3d45810d2718f34b234a6f5e65 585 Gene3D G3DSA:2.40.240.10 493 577 3.1E-34 T 14-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YP_1084 a3f7ce3d45810d2718f34b234a6f5e65 585 Gene3D G3DSA:1.10.1160.10 291 369 8.7E-36 T 14-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 YP_1084 a3f7ce3d45810d2718f34b234a6f5e65 585 SUPERFAMILY SSF52374 58 376 1.21E-101 T 14-10-2018 YP_1084 a3f7ce3d45810d2718f34b234a6f5e65 585 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 58 580 0.0 T 14-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YP_1084 a3f7ce3d45810d2718f34b234a6f5e65 585 Gene3D G3DSA:3.90.800.10 131 239 1.3E-106 T 14-10-2018 YP_1084 a3f7ce3d45810d2718f34b234a6f5e65 585 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 58 367 1.4E-126 T 14-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 YP_1084 a3f7ce3d45810d2718f34b234a6f5e65 585 SUPERFAMILY SSF50715 370 577 1.05E-79 T 14-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YP_1960 3de3e9f7e6bc071032c4a935e9bc8869 215 SUPERFAMILY SSF52499 2 211 1.16E-53 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 YP_1960 3de3e9f7e6bc071032c4a935e9bc8869 215 Gene3D G3DSA:3.40.50.850 1 210 1.1E-63 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 YP_1960 3de3e9f7e6bc071032c4a935e9bc8869 215 Pfam PF00857 Isochorismatase family 4 205 3.1E-36 T 14-10-2018 IPR000868 Isochorismatase-like GO:0003824 YP_1712 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 314 331 6.5E-14 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_1712 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 94 104 6.5E-14 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_1712 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 151 162 6.5E-14 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_1712 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 50 61 6.5E-14 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_1712 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 236 248 6.5E-14 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_1712 e53a864c0071ed615503cb587279f13c 360 Gene3D G3DSA:2.40.160.10 22 360 1.4E-137 T 14-10-2018 IPR023614 Porin domain superfamily YP_1712 e53a864c0071ed615503cb587279f13c 360 Pfam PF00267 Gram-negative porin 27 360 5.7E-130 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YP_1712 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 149 171 1.5E-52 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_1712 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 94 116 1.5E-52 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_1712 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 242 259 1.5E-52 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_1712 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 270 289 1.5E-52 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_1712 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 1.5E-52 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YP_1712 e53a864c0071ed615503cb587279f13c 360 SUPERFAMILY SSF56935 22 360 1.6E-71 T 14-10-2018 YP_2106 2f37e24cd5ea10b380aa41002f350201 278 Gene3D G3DSA:2.40.10.10 38 241 4.0E-30 T 14-10-2018 YP_2106 2f37e24cd5ea10b380aa41002f350201 278 SUPERFAMILY SSF50494 33 269 1.16E-31 T 14-10-2018 IPR009003 Peptidase S1, PA clan YP_2106 2f37e24cd5ea10b380aa41002f350201 278 Pfam PF00089 Trypsin 47 243 9.6E-13 T 14-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 YP_2106 2f37e24cd5ea10b380aa41002f350201 278 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 216 227 - T 14-10-2018 IPR033116 Serine proteases, trypsin family, serine active site YP_2106 2f37e24cd5ea10b380aa41002f350201 278 SMART SM00020 43 273 0.0043 T 14-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 YP_2106 2f37e24cd5ea10b380aa41002f350201 278 Gene3D G3DSA:2.40.10.10 53 160 4.0E-30 T 14-10-2018 YP_2106 2f37e24cd5ea10b380aa41002f350201 278 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 79 84 - T 14-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 YP_2106 2f37e24cd5ea10b380aa41002f350201 278 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 215 227 1.1E-6 T 14-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 YP_2106 2f37e24cd5ea10b380aa41002f350201 278 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 139 153 1.1E-6 T 14-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 YP_2106 2f37e24cd5ea10b380aa41002f350201 278 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 69 84 1.1E-6 T 14-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 YP_3694 03946a470afce94987e1065fb13462da 153 Pfam PF12821 Threonine/Serine exporter, ThrE 12 143 1.6E-33 T 14-10-2018 IPR024528 Threonine/Serine exporter, ThrE YP_1539 3033a27f2a842c33a380650898a72217 285 TIGRFAM TIGR00145 TIGR00145: FTR1 family protein 2 266 1.1E-91 T 14-10-2018 IPR005217 Iron permease FTR1-like GO:0005381|GO:0005886|GO:0033573|GO:0034755 YP_1539 3033a27f2a842c33a380650898a72217 285 Pfam PF03239 Iron permease FTR1 family 4 262 1.4E-67 T 14-10-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0016020|GO:0033573|GO:0034755 YP_0266 b62e8e9f921339017fffd2fa6ee61b32 509 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 183 509 4.1E-178 T 14-10-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 YP_0266 b62e8e9f921339017fffd2fa6ee61b32 509 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 14-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 YP_0266 b62e8e9f921339017fffd2fa6ee61b32 509 Gene3D G3DSA:4.10.320.10 206 251 6.4E-22 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 YP_0266 b62e8e9f921339017fffd2fa6ee61b32 509 SUPERFAMILY SSF52777 267 508 2.0E-80 T 14-10-2018 YP_0266 b62e8e9f921339017fffd2fa6ee61b32 509 SUPERFAMILY SSF51230 1 93 4.19E-23 T 14-10-2018 IPR011053 Single hybrid motif YP_0266 b62e8e9f921339017fffd2fa6ee61b32 509 Pfam PF00364 Biotin-requiring enzyme 106 175 2.6E-21 T 14-10-2018 IPR000089 Biotin/lipoyl attachment YP_0266 b62e8e9f921339017fffd2fa6ee61b32 509 Pfam PF00364 Biotin-requiring enzyme 4 73 1.3E-21 T 14-10-2018 IPR000089 Biotin/lipoyl attachment YP_0266 b62e8e9f921339017fffd2fa6ee61b32 509 SUPERFAMILY SSF51230 105 195 4.32E-23 T 14-10-2018 IPR011053 Single hybrid motif YP_0266 b62e8e9f921339017fffd2fa6ee61b32 509 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 127 156 - T 14-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 YP_0266 b62e8e9f921339017fffd2fa6ee61b32 509 Gene3D G3DSA:2.40.50.100 103 182 5.4E-21 T 14-10-2018 YP_0266 b62e8e9f921339017fffd2fa6ee61b32 509 Gene3D G3DSA:2.40.50.100 1 79 1.9E-21 T 14-10-2018 YP_0266 b62e8e9f921339017fffd2fa6ee61b32 509 Pfam PF02817 e3 binding domain 206 241 1.0E-14 T 14-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 YP_0266 b62e8e9f921339017fffd2fa6ee61b32 509 SUPERFAMILY SSF47005 200 245 4.19E-13 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 YP_0266 b62e8e9f921339017fffd2fa6ee61b32 509 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 278 508 2.5E-80 T 14-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 YP_0266 b62e8e9f921339017fffd2fa6ee61b32 509 Gene3D G3DSA:3.30.559.10 261 509 1.5E-100 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 YP_2246 8e2aa5e8efd7dd488af9cf9abebd2f79 477 Pfam PF00367 phosphotransferase system, EIIB 404 436 2.4E-14 T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 YP_2246 8e2aa5e8efd7dd488af9cf9abebd2f79 477 Gene3D G3DSA:3.30.1360.60 397 477 2.9E-31 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 YP_2246 8e2aa5e8efd7dd488af9cf9abebd2f79 477 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 475 2.4E-226 T 14-10-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0016021|GO:1904659 YP_2246 8e2aa5e8efd7dd488af9cf9abebd2f79 477 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 414 431 - T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 YP_2246 8e2aa5e8efd7dd488af9cf9abebd2f79 477 Pfam PF02378 Phosphotransferase system, EIIC 13 320 7.3E-83 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 YP_2246 8e2aa5e8efd7dd488af9cf9abebd2f79 477 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 377 460 2.1E-26 T 14-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 YP_2246 8e2aa5e8efd7dd488af9cf9abebd2f79 477 SUPERFAMILY SSF55604 401 474 1.14E-20 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 YP_2210 270254559403219dd1bbc7438a44390e 253 SUPERFAMILY SSF52540 15 229 3.8E-45 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2210 270254559403219dd1bbc7438a44390e 253 SMART SM00382 24 220 4.0E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2210 270254559403219dd1bbc7438a44390e 253 Gene3D G3DSA:3.40.50.300 3 252 2.7E-54 T 14-10-2018 YP_2210 270254559403219dd1bbc7438a44390e 253 Pfam PF00005 ABC transporter 18 164 9.7E-21 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2210 270254559403219dd1bbc7438a44390e 253 Hamap MF_01005 Vitamin B12 import ATP-binding protein BtuD [btuD]. 3 251 45.222 T 14-10-2018 IPR023693 ABC transporter, vitamin B12, BtuD GO:0005524|GO:0015889|GO:0016887 YP_2210 270254559403219dd1bbc7438a44390e 253 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3549 a692814ac45ff6bcfaf6acbbd6a62232 686 Gene3D G3DSA:3.20.20.80 2 399 1.8E-142 T 14-10-2018 YP_3549 a692814ac45ff6bcfaf6acbbd6a62232 686 Pfam PF08533 Beta-galactosidase C-terminal domain 626 682 1.2E-15 T 14-10-2018 IPR013739 Beta-galactosidase C-terminal GO:0004565|GO:0006012 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YP_3549 a692814ac45ff6bcfaf6acbbd6a62232 686 Gene3D G3DSA:2.60.40.1180 624 686 9.4E-19 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta YP_3549 a692814ac45ff6bcfaf6acbbd6a62232 686 Pfam PF08532 Beta-galactosidase trimerisation domain 403 615 5.7E-79 T 14-10-2018 IPR013738 Beta-galactosidase trimerisation GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YP_3549 a692814ac45ff6bcfaf6acbbd6a62232 686 Pfam PF02449 Beta-galactosidase 19 392 3.6E-159 T 14-10-2018 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YP_3549 a692814ac45ff6bcfaf6acbbd6a62232 686 PIRSF PIRSF001084 6 684 5.9E-249 T 14-10-2018 IPR003476 Glycoside hydrolase, family 42 GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YP_3549 a692814ac45ff6bcfaf6acbbd6a62232 686 Gene3D G3DSA:3.40.50.880 400 623 5.3E-69 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_3549 a692814ac45ff6bcfaf6acbbd6a62232 686 SUPERFAMILY SSF51445 13 372 6.02E-119 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_3549 a692814ac45ff6bcfaf6acbbd6a62232 686 SUPERFAMILY SSF52317 400 615 5.04E-62 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_2451 bef513f4fdcdc8233f599821cf49ff11 716 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 105 698 1.8E-159 T 14-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_2451 bef513f4fdcdc8233f599821cf49ff11 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 253 272 1.8E-32 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_2451 bef513f4fdcdc8233f599821cf49ff11 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 428 451 1.8E-32 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_2451 bef513f4fdcdc8233f599821cf49ff11 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 579 606 1.8E-32 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_2451 bef513f4fdcdc8233f599821cf49ff11 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 384 395 1.8E-32 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_2451 bef513f4fdcdc8233f599821cf49ff11 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 495 518 1.8E-32 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_2451 bef513f4fdcdc8233f599821cf49ff11 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 467 489 1.8E-32 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_2451 bef513f4fdcdc8233f599821cf49ff11 716 TIGRFAM TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit 17 716 0.0 T 14-10-2018 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YP_2451 bef513f4fdcdc8233f599821cf49ff11 716 Pfam PF02867 Ribonucleotide reductase, barrel domain 178 695 5.9E-141 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_2451 bef513f4fdcdc8233f599821cf49ff11 716 SUPERFAMILY SSF51998 177 700 2.84E-185 T 14-10-2018 YP_2451 bef513f4fdcdc8233f599821cf49ff11 716 Gene3D G3DSA:1.10.1650.20 296 347 1.8E-28 T 14-10-2018 YP_2451 bef513f4fdcdc8233f599821cf49ff11 716 SUPERFAMILY SSF48168 17 176 2.49E-61 T 14-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_2451 bef513f4fdcdc8233f599821cf49ff11 716 Pfam PF08343 Ribonucleotide reductase N-terminal 18 99 7.8E-34 T 14-10-2018 IPR013554 Ribonucleotide reductase N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YP_2451 bef513f4fdcdc8233f599821cf49ff11 716 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 568 590 - T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_2451 bef513f4fdcdc8233f599821cf49ff11 716 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 101 173 1.1E-11 T 14-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_0070 fe73da6d6a5d415f63384da3c295cf9f 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 194 227 6.2E-10 T 14-10-2018 IPR001451 Hexapeptide repeat YP_0070 fe73da6d6a5d415f63384da3c295cf9f 274 Pfam PF06426 Serine acetyltransferase, N-terminal 10 114 3.4E-37 T 14-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 YP_0070 fe73da6d6a5d415f63384da3c295cf9f 274 PIRSF PIRSF000441 76 265 1.8E-59 T 14-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 YP_0070 fe73da6d6a5d415f63384da3c295cf9f 274 Gene3D G3DSA:1.10.3130.10 1 143 2.4E-52 T 14-10-2018 YP_0070 fe73da6d6a5d415f63384da3c295cf9f 274 SUPERFAMILY SSF51161 9 261 8.46E-67 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily YP_0070 fe73da6d6a5d415f63384da3c295cf9f 274 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 203 231 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YP_0070 fe73da6d6a5d415f63384da3c295cf9f 274 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 84 243 1.6E-73 T 14-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 YP_0070 fe73da6d6a5d415f63384da3c295cf9f 274 Gene3D G3DSA:2.160.10.10 144 274 2.8E-38 T 14-10-2018 YP_0070 fe73da6d6a5d415f63384da3c295cf9f 274 SMART SM00971 10 114 1.4E-59 T 14-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 YP_0020 b858999102eff2e0dcf3d3eb962f8031 216 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 16 199 27.446 T 14-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 YP_0020 b858999102eff2e0dcf3d3eb962f8031 216 Pfam PF01926 50S ribosome-binding GTPase 30 148 6.4E-20 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_0020 b858999102eff2e0dcf3d3eb962f8031 216 SUPERFAMILY SSF52540 19 201 1.4E-36 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0020 b858999102eff2e0dcf3d3eb962f8031 216 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 12 195 6.8E-73 T 14-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 YP_0020 b858999102eff2e0dcf3d3eb962f8031 216 Gene3D G3DSA:3.40.50.300 4 205 9.4E-58 T 14-10-2018 YP_3688 cde8bdf112d6f6bdb272743f7269632b 125 Gene3D G3DSA:2.60.40.1470 1 125 7.3E-45 T 14-10-2018 IPR036767 ApaG domain superfamily YP_3688 cde8bdf112d6f6bdb272743f7269632b 125 Pfam PF04379 ApaG domain 18 102 7.8E-33 T 14-10-2018 IPR007474 ApaG domain YP_3688 cde8bdf112d6f6bdb272743f7269632b 125 SUPERFAMILY SSF110069 5 125 1.96E-46 T 14-10-2018 IPR036767 ApaG domain superfamily YP_3688 cde8bdf112d6f6bdb272743f7269632b 125 Hamap MF_00791 Protein ApaG [apaG]. 1 125 31.387 T 14-10-2018 IPR023065 Uncharacterised protein family ApaG YP_3665 bde6b3c82a401761b0ffa9c4a7975368 545 Gene3D G3DSA:1.25.40.590 149 301 1.1E-33 T 14-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily YP_3665 bde6b3c82a401761b0ffa9c4a7975368 545 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 151 352 1.8E-49 T 14-10-2018 IPR017732 Type IV / VI secretion system, DotU YP_3665 bde6b3c82a401761b0ffa9c4a7975368 545 Pfam PF09850 Type VI secretion system protein DotU 154 345 3.8E-42 T 14-10-2018 IPR017732 Type IV / VI secretion system, DotU YP_3665 bde6b3c82a401761b0ffa9c4a7975368 545 SUPERFAMILY SSF103088 394 516 1.05E-20 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_3665 bde6b3c82a401761b0ffa9c4a7975368 545 Gene3D G3DSA:3.30.1330.60 364 519 2.6E-33 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_3665 bde6b3c82a401761b0ffa9c4a7975368 545 Pfam PF00691 OmpA family 407 510 8.8E-11 T 14-10-2018 IPR006665 OmpA-like domain YP_2020 220f3d21da8d782c43e67a936e8480aa 200 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 9 198 2.3E-92 T 14-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 YP_2020 220f3d21da8d782c43e67a936e8480aa 200 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 5 200 47.897 T 14-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 YP_2020 220f3d21da8d782c43e67a936e8480aa 200 SUPERFAMILY SSF142695 7 177 3.92E-65 T 14-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 YP_2020 220f3d21da8d782c43e67a936e8480aa 200 Gene3D G3DSA:3.40.50.10990 5 178 1.6E-75 T 14-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 YP_2020 220f3d21da8d782c43e67a936e8480aa 200 Pfam PF00925 GTP cyclohydrolase II 9 174 8.1E-66 T 14-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 YP_4034 e339b83b8cbf52b62b3cb4651fe72520 274 PRINTS PR00123 ATP synthase A subunit signature 107 123 1.8E-15 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4034 e339b83b8cbf52b62b3cb4651fe72520 274 PRINTS PR00123 ATP synthase A subunit signature 254 269 1.8E-15 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4034 e339b83b8cbf52b62b3cb4651fe72520 274 PRINTS PR00123 ATP synthase A subunit signature 206 228 1.8E-15 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4034 e339b83b8cbf52b62b3cb4651fe72520 274 Pfam PF00119 ATP synthase A chain 50 268 1.9E-54 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4034 e339b83b8cbf52b62b3cb4651fe72520 274 SUPERFAMILY SSF81336 98 268 9.55E-49 T 14-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4034 e339b83b8cbf52b62b3cb4651fe72520 274 Hamap MF_01393 ATP synthase subunit a [atpB]. 14 274 15.972 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4034 e339b83b8cbf52b62b3cb4651fe72520 274 Gene3D G3DSA:1.20.120.220 98 274 2.0E-69 T 14-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4034 e339b83b8cbf52b62b3cb4651fe72520 274 ProSitePatterns PS00449 ATP synthase a subunit signature. 209 218 - T 14-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4034 e339b83b8cbf52b62b3cb4651fe72520 274 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 42 269 1.6E-43 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_0427 0f93344a4102c3fc00050eab92f96928 264 TIGRFAM TIGR01401 fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT 4 248 3.1E-72 T 14-10-2018 IPR006304 Type III secretion protein SpaR/YscT GO:0016021 YP_0427 0f93344a4102c3fc00050eab92f96928 264 Pfam PF01311 Bacterial export proteins, family 1 9 243 1.0E-52 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_0427 0f93344a4102c3fc00050eab92f96928 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 179 201 6.1E-28 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_0427 0f93344a4102c3fc00050eab92f96928 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 78 97 6.1E-28 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_0427 0f93344a4102c3fc00050eab92f96928 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 17 38 6.1E-28 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_0427 0f93344a4102c3fc00050eab92f96928 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 201 220 6.1E-28 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_1276 0c512fdb1df6b54e44e1d419e6d0b5ce 355 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 25 148 7.5E-36 T 14-10-2018 IPR026992 Non-haem dioxygenase N-terminal domain YP_1276 0c512fdb1df6b54e44e1d419e6d0b5ce 355 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 197 293 9.9E-17 T 14-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 YP_1276 0c512fdb1df6b54e44e1d419e6d0b5ce 355 SUPERFAMILY SSF51197 16 305 1.24E-81 T 14-10-2018 YP_1276 0c512fdb1df6b54e44e1d419e6d0b5ce 355 Gene3D G3DSA:2.60.120.330 13 337 1.4E-84 T 14-10-2018 IPR027443 Isopenicillin N synthase-like YP_1276 0c512fdb1df6b54e44e1d419e6d0b5ce 355 PRINTS PR00682 Isopenicillin N synthase signature 47 64 3.8E-11 T 14-10-2018 YP_1276 0c512fdb1df6b54e44e1d419e6d0b5ce 355 PRINTS PR00682 Isopenicillin N synthase signature 254 280 3.8E-11 T 14-10-2018 YP_1276 0c512fdb1df6b54e44e1d419e6d0b5ce 355 PRINTS PR00682 Isopenicillin N synthase signature 218 239 3.8E-11 T 14-10-2018 YP_0308 c87970fe9fc8b6c798e0226ef8038478 280 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 38 111 2.8E-28 T 14-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core YP_0308 c87970fe9fc8b6c798e0226ef8038478 280 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 185 246 9.6E-7 T 14-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core YP_0308 c87970fe9fc8b6c798e0226ef8038478 280 TIGRFAM TIGR00444 mazG: MazG family protein 21 274 1.4E-106 T 14-10-2018 IPR011551 NTP pyrophosphohydrolase MazG YP_0308 c87970fe9fc8b6c798e0226ef8038478 280 SUPERFAMILY SSF101386 14 116 2.24E-25 T 14-10-2018 YP_0308 c87970fe9fc8b6c798e0226ef8038478 280 Gene3D G3DSA:1.10.287.1080 146 279 3.3E-47 T 14-10-2018 YP_0308 c87970fe9fc8b6c798e0226ef8038478 280 SUPERFAMILY SSF101386 153 253 7.29E-23 T 14-10-2018 YP_0308 c87970fe9fc8b6c798e0226ef8038478 280 Gene3D G3DSA:1.10.287.1080 12 142 1.2E-45 T 14-10-2018 YP_3874 85e4c91e9c79fd07ac744a9d439caaa1 481 Gene3D G3DSA:3.30.2290.10 11 240 1.3E-18 T 14-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal YP_3874 85e4c91e9c79fd07ac744a9d439caaa1 481 SUPERFAMILY SSF111283 22 480 6.28E-131 T 14-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 YP_3874 85e4c91e9c79fd07ac744a9d439caaa1 481 PIRSF PIRSF004919 14 481 1.8E-145 T 14-10-2018 IPR025502 TldD YP_3874 85e4c91e9c79fd07ac744a9d439caaa1 481 Pfam PF01523 Putative modulator of DNA gyrase 35 332 7.0E-68 T 14-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 YP_1682 aca552d52bdc358b38f21ff2e4c9720a 340 TIGRFAM TIGR03814 Gln_ase: glutaminase A 32 331 1.4E-100 T 14-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 YP_1682 aca552d52bdc358b38f21ff2e4c9720a 340 SUPERFAMILY SSF56601 29 331 2.91E-100 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YP_1682 aca552d52bdc358b38f21ff2e4c9720a 340 Pfam PF04960 Glutaminase 47 331 2.0E-95 T 14-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 YP_1682 aca552d52bdc358b38f21ff2e4c9720a 340 Gene3D G3DSA:3.40.710.10 26 333 1.5E-101 T 14-10-2018 YP_1682 aca552d52bdc358b38f21ff2e4c9720a 340 Hamap MF_00313 Glutaminase [glsA]. 29 331 40.831 T 14-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 YP_2339 4675ea1dfbefdcf1eea337bbe04e256b 457 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 122 446 1.1E-102 T 14-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 YP_2339 4675ea1dfbefdcf1eea337bbe04e256b 457 Pfam PF00425 chorismate binding enzyme 191 440 4.2E-65 T 14-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal YP_2339 4675ea1dfbefdcf1eea337bbe04e256b 457 SUPERFAMILY SSF56322 25 448 1.2E-97 T 14-10-2018 IPR005801 ADC synthase GO:0009058 YP_2339 4675ea1dfbefdcf1eea337bbe04e256b 457 Hamap MF_01935 Isochorismate synthase MenF [menF]. 5 450 29.785 T 14-10-2018 IPR034681 Isochorismate synthase MenF GO:0008909|GO:0009234 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 YP_2339 4675ea1dfbefdcf1eea337bbe04e256b 457 Gene3D G3DSA:3.60.120.10 1 457 2.9E-173 T 14-10-2018 IPR005801 ADC synthase GO:0009058 YP_2918 c5743148befe7f6083cf828aee6838be 562 Pfam PF08479 POTRA domain, ShlB-type 77 153 3.8E-24 T 14-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type YP_2918 c5743148befe7f6083cf828aee6838be 562 Gene3D G3DSA:3.10.20.310 71 153 5.3E-8 T 14-10-2018 YP_2918 c5743148befe7f6083cf828aee6838be 562 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 213 526 2.0E-108 T 14-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal YP_2918 c5743148befe7f6083cf828aee6838be 562 Pfam PF17287 POTRA domain 154 208 1.5E-19 T 14-10-2018 IPR035251 ShlB, POTRA domain YP_2918 c5743148befe7f6083cf828aee6838be 562 PIRSF PIRSF029745 11 562 2.5E-157 T 14-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 YP_2918 c5743148befe7f6083cf828aee6838be 562 Gene3D G3DSA:2.40.160.50 186 561 5.7E-100 T 14-10-2018 YP_2596 c12a61c4aba62af834d5190029c06917 133 PIRSF PIRSF020555 12 133 1.6E-57 T 14-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats YP_2596 c12a61c4aba62af834d5190029c06917 133 Pfam PF16068 Domain of unknown function (DUF4810) 41 124 3.0E-34 T 14-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats YP_2860 ea332d134cded9c91c208853a3331d18 328 SUPERFAMILY SSF46785 16 99 1.03E-15 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_2860 ea332d134cded9c91c208853a3331d18 328 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 21 79 3.4E-14 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2860 ea332d134cded9c91c208853a3331d18 328 SUPERFAMILY SSF53850 110 313 1.35E-37 T 14-10-2018 YP_2860 ea332d134cded9c91c208853a3331d18 328 Gene3D G3DSA:1.10.10.10 19 110 7.4E-15 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2860 ea332d134cded9c91c208853a3331d18 328 Gene3D G3DSA:3.40.190.290 111 319 2.2E-34 T 14-10-2018 YP_2860 ea332d134cded9c91c208853a3331d18 328 Pfam PF03466 LysR substrate binding domain 108 312 2.4E-36 T 14-10-2018 IPR005119 LysR, substrate-binding YP_2048 80be217d29689e1aca6aad8aeffcbd3c 712 TIGRFAM TIGR01846 type_I_sec_HlyB: type I secretion system ATPase 18 712 0.0 T 14-10-2018 IPR010132 ATPase, type I secretion system, HlyB GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 YP_2048 80be217d29689e1aca6aad8aeffcbd3c 712 SMART SM00382 500 684 2.7E-19 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2048 80be217d29689e1aca6aad8aeffcbd3c 712 Gene3D G3DSA:1.20.1560.10 146 459 4.0E-71 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_2048 80be217d29689e1aca6aad8aeffcbd3c 712 SUPERFAMILY SSF52540 468 710 1.23E-85 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2048 80be217d29689e1aca6aad8aeffcbd3c 712 SUPERFAMILY SSF90123 147 459 6.8E-65 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_2048 80be217d29689e1aca6aad8aeffcbd3c 712 Gene3D G3DSA:3.40.50.300 465 712 5.2E-87 T 14-10-2018 YP_2048 80be217d29689e1aca6aad8aeffcbd3c 712 Pfam PF00005 ABC transporter 491 640 3.8E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2048 80be217d29689e1aca6aad8aeffcbd3c 712 Pfam PF03412 Peptidase C39 family 21 133 7.7E-7 T 14-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 YP_2048 80be217d29689e1aca6aad8aeffcbd3c 712 ProSitePatterns PS00211 ABC transporters family signature. 612 626 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2048 80be217d29689e1aca6aad8aeffcbd3c 712 Pfam PF00664 ABC transporter transmembrane region 162 428 1.2E-44 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YP_2048 80be217d29689e1aca6aad8aeffcbd3c 712 Gene3D G3DSA:3.90.70.10 17 133 3.0E-14 T 14-10-2018 YP_3438 0bba6577c173c43736a401697d03b421 446 SUPERFAMILY SSF48452 267 414 3.21E-7 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_3438 0bba6577c173c43736a401697d03b421 446 Gene3D G3DSA:1.25.40.10 240 425 1.2E-7 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_1191 3845339e0a773103043f7a435fcfdd4b 261 SUPERFAMILY SSF53335 4 255 1.37E-38 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1191 3845339e0a773103043f7a435fcfdd4b 261 Gene3D G3DSA:3.40.50.150 8 261 4.8E-71 T 14-10-2018 YP_1191 3845339e0a773103043f7a435fcfdd4b 261 Hamap MF_02057 tRNA 5-carboxymethoxyuridine methyltransferase [cmoM]. 2 255 42.087 T 14-10-2018 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 YP_1191 3845339e0a773103043f7a435fcfdd4b 261 Pfam PF13847 Methyltransferase domain 46 147 7.0E-19 T 14-10-2018 IPR025714 Methyltransferase domain YP_3354 1c44f2f1110680de2520978ea46b8363 499 SUPERFAMILY SSF63411 29 240 2.62E-27 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 YP_3354 1c44f2f1110680de2520978ea46b8363 499 Gene3D G3DSA:3.30.830.10 8 256 8.0E-53 T 14-10-2018 YP_3354 1c44f2f1110680de2520978ea46b8363 499 Pfam PF05193 Peptidase M16 inactive domain 201 378 7.0E-17 T 14-10-2018 IPR007863 Peptidase M16, C-terminal YP_3354 1c44f2f1110680de2520978ea46b8363 499 Gene3D G3DSA:3.30.830.10 257 472 4.3E-104 T 14-10-2018 YP_3354 1c44f2f1110680de2520978ea46b8363 499 Pfam PF00675 Insulinase (Peptidase family M16) 51 173 5.8E-11 T 14-10-2018 IPR011765 Peptidase M16, N-terminal YP_3354 1c44f2f1110680de2520978ea46b8363 499 SUPERFAMILY SSF63411 342 458 8.56E-7 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 YP_2521 70cbb5e5da4813458dc09c7fbdf6399f 332 Pfam PF10502 Signal peptidase, peptidase S26 270 310 4.0E-6 T 14-10-2018 IPR019533 Peptidase S26 YP_2521 70cbb5e5da4813458dc09c7fbdf6399f 332 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 151 163 2.7E-26 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 YP_2521 70cbb5e5da4813458dc09c7fbdf6399f 332 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 272 291 2.7E-26 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 YP_2521 70cbb5e5da4813458dc09c7fbdf6399f 332 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 87 103 2.7E-26 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 YP_2521 70cbb5e5da4813458dc09c7fbdf6399f 332 ProSitePatterns PS00761 Signal peptidases I signature 3. 277 290 - T 14-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 YP_2521 70cbb5e5da4813458dc09c7fbdf6399f 332 Gene3D G3DSA:2.170.230.10 162 271 3.6E-72 T 14-10-2018 YP_2521 70cbb5e5da4813458dc09c7fbdf6399f 332 SUPERFAMILY SSF51306 85 331 5.23E-77 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily YP_2521 70cbb5e5da4813458dc09c7fbdf6399f 332 Gene3D G3DSA:2.10.109.10 87 312 3.6E-72 T 14-10-2018 YP_2521 70cbb5e5da4813458dc09c7fbdf6399f 332 ProSitePatterns PS00760 Signal peptidases I lysine active site. 153 165 - T 14-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 YP_2521 70cbb5e5da4813458dc09c7fbdf6399f 332 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 72 166 4.6E-25 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 YP_2521 70cbb5e5da4813458dc09c7fbdf6399f 332 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 268 312 3.9E-17 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 YP_2521 70cbb5e5da4813458dc09c7fbdf6399f 332 Pfam PF00717 Peptidase S24-like 93 166 3.3E-20 T 14-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C YP_2521 70cbb5e5da4813458dc09c7fbdf6399f 332 ProSitePatterns PS00501 Signal peptidases I serine active site. 96 103 - T 14-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 YP_0169 0b8d28860bd97dd35ef14dab6cfb2784 199 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 40 197 2.5E-48 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 YP_0169 0b8d28860bd97dd35ef14dab6cfb2784 199 Gene3D G3DSA:2.40.100.10 34 199 1.9E-70 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily YP_0169 0b8d28860bd97dd35ef14dab6cfb2784 199 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 79 91 7.8E-11 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 YP_0169 0b8d28860bd97dd35ef14dab6cfb2784 199 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 153 168 7.8E-11 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 YP_0169 0b8d28860bd97dd35ef14dab6cfb2784 199 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 53 68 7.8E-11 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 YP_0169 0b8d28860bd97dd35ef14dab6cfb2784 199 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 74 91 - T 14-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 YP_0169 0b8d28860bd97dd35ef14dab6cfb2784 199 SUPERFAMILY SSF50891 36 198 1.46E-57 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily YP_0169 0b8d28860bd97dd35ef14dab6cfb2784 199 PIRSF PIRSF001467 22 197 1.2E-28 T 14-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 YP_0294 4d030113fab512b081bfb4dde89cbb1c 303 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 61 79 2.8E-47 T 14-10-2018 YP_0294 4d030113fab512b081bfb4dde89cbb1c 303 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 92 107 2.8E-47 T 14-10-2018 YP_0294 4d030113fab512b081bfb4dde89cbb1c 303 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 215 233 2.8E-47 T 14-10-2018 YP_0294 4d030113fab512b081bfb4dde89cbb1c 303 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 243 260 2.8E-47 T 14-10-2018 YP_0294 4d030113fab512b081bfb4dde89cbb1c 303 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 280 293 2.8E-47 T 14-10-2018 YP_0294 4d030113fab512b081bfb4dde89cbb1c 303 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 191 206 2.8E-47 T 14-10-2018 YP_0294 4d030113fab512b081bfb4dde89cbb1c 303 SUPERFAMILY SSF53807 41 297 2.0E-54 T 14-10-2018 YP_0294 4d030113fab512b081bfb4dde89cbb1c 303 Pfam PF01497 Periplasmic binding protein 44 278 1.6E-44 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain YP_0294 4d030113fab512b081bfb4dde89cbb1c 303 Gene3D G3DSA:3.40.50.1980 131 302 2.6E-55 T 14-10-2018 YP_0294 4d030113fab512b081bfb4dde89cbb1c 303 Gene3D G3DSA:3.40.50.1980 39 128 1.7E-22 T 14-10-2018 YP_0393 ee81949cf867675a7e5e16a24558d4e6 265 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 42 240 6.1E-70 T 14-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 YP_0393 ee81949cf867675a7e5e16a24558d4e6 265 Gene3D G3DSA:3.40.1280.10 14 179 4.4E-68 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YP_0393 ee81949cf867675a7e5e16a24558d4e6 265 PIRSF PIRSF000386 20 264 1.2E-101 T 14-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 YP_0393 ee81949cf867675a7e5e16a24558d4e6 265 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 20 252 2.6E-110 T 14-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 YP_0393 ee81949cf867675a7e5e16a24558d4e6 265 SUPERFAMILY SSF75217 19 263 1.83E-102 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases YP_0393 ee81949cf867675a7e5e16a24558d4e6 265 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 265 119.209 T 14-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 YP_0393 ee81949cf867675a7e5e16a24558d4e6 265 Gene3D G3DSA:1.10.1270.20 180 265 1.3E-35 T 14-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 YP_0139 c3ae84ebf659e3ff0f7ba3c7718306ef 539 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 7 539 1.4E-285 T 14-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 YP_0139 c3ae84ebf659e3ff0f7ba3c7718306ef 539 Gene3D G3DSA:3.90.228.20 234 524 1.4E-237 T 14-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 YP_0139 c3ae84ebf659e3ff0f7ba3c7718306ef 539 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 15 537 55.346 T 14-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 YP_0139 c3ae84ebf659e3ff0f7ba3c7718306ef 539 SUPERFAMILY SSF53795 228 539 8.47E-129 T 14-10-2018 YP_0139 c3ae84ebf659e3ff0f7ba3c7718306ef 539 Gene3D G3DSA:3.40.449.10 22 233 1.4E-237 T 14-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 YP_0139 c3ae84ebf659e3ff0f7ba3c7718306ef 539 Gene3D G3DSA:2.170.8.10 46 349 1.4E-237 T 14-10-2018 YP_0139 c3ae84ebf659e3ff0f7ba3c7718306ef 539 PIRSF PIRSF006294 3 539 8.9E-231 T 14-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 YP_0139 c3ae84ebf659e3ff0f7ba3c7718306ef 539 Pfam PF01293 Phosphoenolpyruvate carboxykinase 21 489 6.3E-211 T 14-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 YP_0139 c3ae84ebf659e3ff0f7ba3c7718306ef 539 SUPERFAMILY SSF68923 8 226 2.09E-91 T 14-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 YP_0139 c3ae84ebf659e3ff0f7ba3c7718306ef 539 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 264 279 - T 14-10-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 YP_1045 c9d089ca7f028fda207b61052653c369 588 Gene3D G3DSA:3.50.50.60 9 416 8.9E-172 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_1045 c9d089ca7f028fda207b61052653c369 588 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 588 4.3E-242 T 14-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_1045 c9d089ca7f028fda207b61052653c369 588 SUPERFAMILY SSF56425 236 356 6.58E-42 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_1045 c9d089ca7f028fda207b61052653c369 588 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 14-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_1045 c9d089ca7f028fda207b61052653c369 588 Pfam PF00890 FAD binding domain 9 405 4.0E-117 T 14-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_1045 c9d089ca7f028fda207b61052653c369 588 Gene3D G3DSA:1.20.58.100 431 547 1.6E-39 T 14-10-2018 YP_1045 c9d089ca7f028fda207b61052653c369 588 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 588 1.2E-34 T 14-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_1045 c9d089ca7f028fda207b61052653c369 588 SUPERFAMILY SSF46977 452 588 9.29E-45 T 14-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_1045 c9d089ca7f028fda207b61052653c369 588 Gene3D G3DSA:4.10.80.40 548 588 8.2E-25 T 14-10-2018 YP_1045 c9d089ca7f028fda207b61052653c369 588 Gene3D G3DSA:3.90.700.10 246 350 8.9E-172 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_1045 c9d089ca7f028fda207b61052653c369 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 7.0E-5 T 14-10-2018 YP_1045 c9d089ca7f028fda207b61052653c369 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 368 390 7.0E-5 T 14-10-2018 YP_1045 c9d089ca7f028fda207b61052653c369 588 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 6 588 5.8E-276 T 14-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_1045 c9d089ca7f028fda207b61052653c369 588 SUPERFAMILY SSF51905 5 438 1.87E-77 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_1045 c9d089ca7f028fda207b61052653c369 588 PIRSF PIRSF000171 1 580 1.9E-46 T 14-10-2018 YP_pCRY04 7ffe7a597cd0baeaf1b6ea94ea5331a9 151 Pfam PF02357 Transcription termination factor nusG 3 98 8.0E-15 T 14-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YP_pCRY04 7ffe7a597cd0baeaf1b6ea94ea5331a9 151 SMART SM00738 1 102 3.3E-8 T 14-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YP_pCRY04 7ffe7a597cd0baeaf1b6ea94ea5331a9 151 SUPERFAMILY SSF82679 1 98 4.45E-21 T 14-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YP_pCRY04 7ffe7a597cd0baeaf1b6ea94ea5331a9 151 Gene3D G3DSA:3.30.70.940 1 148 3.4E-27 T 14-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YP_2703 bfde272f0a5483ed197e401b17dcb1d9 716 Hamap MF_00347 Polyphosphate kinase [ppk]. 33 710 27.235 T 14-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 YP_2703 bfde272f0a5483ed197e401b17dcb1d9 716 PIRSF PIRSF015589 16 716 3.3E-242 T 14-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 YP_2703 bfde272f0a5483ed197e401b17dcb1d9 716 Gene3D G3DSA:3.30.870.10 346 528 5.6E-74 T 14-10-2018 YP_2703 bfde272f0a5483ed197e401b17dcb1d9 716 Gene3D G3DSA:1.20.58.310 38 138 6.6E-38 T 14-10-2018 YP_2703 bfde272f0a5483ed197e401b17dcb1d9 716 SUPERFAMILY SSF56024 344 526 1.1E-55 T 14-10-2018 YP_2703 bfde272f0a5483ed197e401b17dcb1d9 716 SUPERFAMILY SSF140356 32 134 2.35E-34 T 14-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 YP_2703 bfde272f0a5483ed197e401b17dcb1d9 716 Gene3D G3DSA:3.30.870.10 529 715 1.2E-71 T 14-10-2018 YP_2703 bfde272f0a5483ed197e401b17dcb1d9 716 Pfam PF02503 Polyphosphate kinase middle domain 148 349 3.8E-43 T 14-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 YP_2703 bfde272f0a5483ed197e401b17dcb1d9 716 Pfam PF13089 Polyphosphate kinase N-terminal domain 36 138 2.3E-31 T 14-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 YP_2703 bfde272f0a5483ed197e401b17dcb1d9 716 SUPERFAMILY SSF143724 136 341 2.55E-60 T 14-10-2018 YP_2703 bfde272f0a5483ed197e401b17dcb1d9 716 Pfam PF13090 Polyphosphate kinase C-terminal domain 360 705 1.9E-143 T 14-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 YP_2703 bfde272f0a5483ed197e401b17dcb1d9 716 SUPERFAMILY SSF56024 529 711 1.39E-68 T 14-10-2018 YP_2703 bfde272f0a5483ed197e401b17dcb1d9 716 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 36 706 2.1E-257 T 14-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 YP_2703 bfde272f0a5483ed197e401b17dcb1d9 716 Gene3D G3DSA:3.30.1840.10 139 336 1.7E-75 T 14-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 YP_0136 80b197407cc1e66acf3b9c8dc2551033 171 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 120 136 - T 14-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 YP_0136 80b197407cc1e66acf3b9c8dc2551033 171 Gene3D G3DSA:1.10.287.180 2 77 1.1E-28 T 14-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 YP_0136 80b197407cc1e66acf3b9c8dc2551033 171 SUPERFAMILY SSF46557 4 79 5.36E-26 T 14-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 YP_0136 80b197407cc1e66acf3b9c8dc2551033 171 PIRSF PIRSF006092 1 158 3.4E-62 T 14-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 YP_0136 80b197407cc1e66acf3b9c8dc2551033 171 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 4 157 2.2E-71 T 14-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 YP_0136 80b197407cc1e66acf3b9c8dc2551033 171 Gene3D G3DSA:3.10.50.30 79 158 1.4E-32 T 14-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 YP_0136 80b197407cc1e66acf3b9c8dc2551033 171 Hamap MF_00930 Transcription elongation factor GreB [greB]. 2 157 52.892 T 14-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 YP_0136 80b197407cc1e66acf3b9c8dc2551033 171 SUPERFAMILY SSF54534 81 156 5.1E-24 T 14-10-2018 YP_0136 80b197407cc1e66acf3b9c8dc2551033 171 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 18 49 - T 14-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 YP_0136 80b197407cc1e66acf3b9c8dc2551033 171 Hamap MF_00105 Transcription elongation factor GreA [greA]. 3 155 28.74 T 14-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 YP_0136 80b197407cc1e66acf3b9c8dc2551033 171 Pfam PF03449 Transcription elongation factor, N-terminal 5 75 1.3E-23 T 14-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 YP_0136 80b197407cc1e66acf3b9c8dc2551033 171 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 156 2.9E-27 T 14-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 YP_3327 2a6168dc9fcc9072061318edd1d46421 507 SUPERFAMILY SSF52540 5 224 5.74E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3327 2a6168dc9fcc9072061318edd1d46421 507 Gene3D G3DSA:3.40.50.300 1 241 8.2E-59 T 14-10-2018 YP_3327 2a6168dc9fcc9072061318edd1d46421 507 SUPERFAMILY SSF52540 271 486 1.23E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3327 2a6168dc9fcc9072061318edd1d46421 507 Gene3D G3DSA:3.40.50.300 261 506 3.9E-44 T 14-10-2018 YP_3327 2a6168dc9fcc9072061318edd1d46421 507 SMART SM00382 280 485 4.4E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3327 2a6168dc9fcc9072061318edd1d46421 507 SMART SM00382 31 218 6.0E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3327 2a6168dc9fcc9072061318edd1d46421 507 Pfam PF00005 ABC transporter 22 171 6.6E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3327 2a6168dc9fcc9072061318edd1d46421 507 ProSitePatterns PS00211 ABC transporters family signature. 398 412 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3327 2a6168dc9fcc9072061318edd1d46421 507 Pfam PF00005 ABC transporter 272 425 3.5E-21 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1515 f9e53b56085d3ca17852c8d9471e1081 101 Pfam PF10908 Protein of unknown function (DUF2778) 11 82 8.1E-22 T 14-10-2018 IPR021225 Protein of unknown function DUF2778 YP_1223 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 3.1E-27 T 14-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 YP_1223 25ddc8d907d8c6cdf9a50a3e27ba432a 72 SMART SM00316 4 72 4.3E-7 T 14-10-2018 IPR022967 RNA-binding domain, S1 YP_1223 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Gene3D G3DSA:2.40.50.140 1 72 9.2E-36 T 14-10-2018 YP_1223 25ddc8d907d8c6cdf9a50a3e27ba432a 72 SUPERFAMILY SSF50249 1 70 1.18E-28 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_1223 25ddc8d907d8c6cdf9a50a3e27ba432a 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 1.3E-38 T 14-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 YP_1223 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.17 T 14-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 YP_1668 36d6e8bc06628e75e5c039b635b85562 440 Gene3D G3DSA:3.30.750.70 200 298 8.1E-35 T 14-10-2018 YP_1668 36d6e8bc06628e75e5c039b635b85562 440 Gene3D G3DSA:3.40.1080.20 301 440 3.1E-56 T 14-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily YP_1668 36d6e8bc06628e75e5c039b635b85562 440 Gene3D G3DSA:3.40.1080.10 1 195 4.4E-57 T 14-10-2018 YP_1668 36d6e8bc06628e75e5c039b635b85562 440 SUPERFAMILY SSF100950 4 232 1.53E-32 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_1668 36d6e8bc06628e75e5c039b635b85562 440 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 283 434 6.2E-60 T 14-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain YP_1668 36d6e8bc06628e75e5c039b635b85562 440 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 6 195 4.9E-14 T 14-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 YP_1668 36d6e8bc06628e75e5c039b635b85562 440 SUPERFAMILY SSF100950 209 438 1.0E-59 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_2934 159c0cee92e10c85d218cbfa382f3bbb 727 SUPERFAMILY SSF52279 381 607 4.84E-48 T 14-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 YP_2934 159c0cee92e10c85d218cbfa382f3bbb 727 Gene3D G3DSA:3.20.20.300 12 364 6.6E-120 T 14-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 YP_2934 159c0cee92e10c85d218cbfa382f3bbb 727 Gene3D G3DSA:2.60.40.10 607 720 6.0E-31 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_2934 159c0cee92e10c85d218cbfa382f3bbb 727 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 381 604 4.6E-44 T 14-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 YP_2934 159c0cee92e10c85d218cbfa382f3bbb 727 SUPERFAMILY SSF51445 3 380 4.42E-110 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_2934 159c0cee92e10c85d218cbfa382f3bbb 727 PRINTS PR00133 Glycosyl hydrolase family 3 signature 194 210 2.1E-20 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YP_2934 159c0cee92e10c85d218cbfa382f3bbb 727 PRINTS PR00133 Glycosyl hydrolase family 3 signature 92 108 2.1E-20 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YP_2934 159c0cee92e10c85d218cbfa382f3bbb 727 PRINTS PR00133 Glycosyl hydrolase family 3 signature 111 130 2.1E-20 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YP_2934 159c0cee92e10c85d218cbfa382f3bbb 727 PRINTS PR00133 Glycosyl hydrolase family 3 signature 264 282 2.1E-20 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YP_2934 159c0cee92e10c85d218cbfa382f3bbb 727 PRINTS PR00133 Glycosyl hydrolase family 3 signature 157 173 2.1E-20 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YP_2934 159c0cee92e10c85d218cbfa382f3bbb 727 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 24 342 5.7E-76 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YP_2934 159c0cee92e10c85d218cbfa382f3bbb 727 SMART SM01217 641 710 5.3E-24 T 14-10-2018 IPR026891 Fibronectin type III-like domain YP_2934 159c0cee92e10c85d218cbfa382f3bbb 727 Gene3D G3DSA:3.40.50.1700 367 606 1.2E-66 T 14-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 YP_2934 159c0cee92e10c85d218cbfa382f3bbb 727 Pfam PF14310 Fibronectin type III-like domain 641 710 8.1E-16 T 14-10-2018 IPR026891 Fibronectin type III-like domain YP_pCD50 e756db9424a49a0e7677a4893299e6c8 146 Pfam PF09621 Type III secretion system regulator (LcrR) 3 142 1.3E-70 T 14-10-2018 IPR022797 Type III secretion system regulator LcrR/Chaperone CesD2 YP_pCD50 e756db9424a49a0e7677a4893299e6c8 146 TIGRFAM TIGR02572 LcrR: type III secretion system regulator LcrR 2 142 4.5E-72 T 14-10-2018 IPR013405 Type III secretion system regulator, LcrR YP_0850 b12d8bb58a1905cb5d5d3107cdb1d9b4 240 Pfam PF00149 Calcineurin-like phosphoesterase 1 199 6.8E-10 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 YP_0850 b12d8bb58a1905cb5d5d3107cdb1d9b4 240 Gene3D G3DSA:3.60.21.10 1 235 1.1E-19 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like YP_0850 b12d8bb58a1905cb5d5d3107cdb1d9b4 240 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 240 127.354 T 14-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 YP_0850 b12d8bb58a1905cb5d5d3107cdb1d9b4 240 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 3 232 7.7E-104 T 14-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 YP_0850 b12d8bb58a1905cb5d5d3107cdb1d9b4 240 SUPERFAMILY SSF56300 3 238 2.71E-36 T 14-10-2018 YP_3774 8b614dba4836f115e6eddde871dadc0c 96 Gene3D G3DSA:3.30.70.100 1 96 4.8E-37 T 14-10-2018 YP_3774 8b614dba4836f115e6eddde871dadc0c 96 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 5.0E-15 T 14-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain YP_3774 8b614dba4836f115e6eddde871dadc0c 96 Hamap MF_02051 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [lsrG]. 1 96 36.112 T 14-10-2018 IPR033672 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase GO:0016853 YP_3774 8b614dba4836f115e6eddde871dadc0c 96 SUPERFAMILY SSF54909 1 91 8.26E-24 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel YP_3175 a4772f218516db3cc768517d26206a80 498 Hamap MF_01550 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [gppA]. 3 495 54.25 T 14-10-2018 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GO:0008894|GO:0015974 KEGG: 00230+3.6.1.40 YP_3175 a4772f218516db3cc768517d26206a80 498 SUPERFAMILY SSF53067 8 129 2.53E-38 T 14-10-2018 YP_3175 a4772f218516db3cc768517d26206a80 498 PIRSF PIRSF001267 1 497 1.0E-180 T 14-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 YP_3175 a4772f218516db3cc768517d26206a80 498 Gene3D G3DSA:3.30.420.150 113 290 1.9E-87 T 14-10-2018 YP_3175 a4772f218516db3cc768517d26206a80 498 Gene3D G3DSA:3.30.420.40 10 298 1.9E-87 T 14-10-2018 YP_3175 a4772f218516db3cc768517d26206a80 498 Gene3D G3DSA:1.10.3210.10 306 498 2.6E-49 T 14-10-2018 YP_3175 a4772f218516db3cc768517d26206a80 498 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 9 301 2.6E-93 T 14-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 YP_3175 a4772f218516db3cc768517d26206a80 498 SUPERFAMILY SSF53067 133 301 4.21E-42 T 14-10-2018 YP_3175 a4772f218516db3cc768517d26206a80 498 SUPERFAMILY SSF109604 308 495 1.48E-44 T 14-10-2018 YP_3175 a4772f218516db3cc768517d26206a80 498 Pfam PF02541 Ppx/GppA phosphatase family 22 302 1.7E-96 T 14-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 YP_pMT113 3b48d18cdaa7cb389c679123fe90992b 424 Gene3D G3DSA:3.40.50.300 131 423 1.5E-82 T 14-10-2018 YP_pMT113 3b48d18cdaa7cb389c679123fe90992b 424 Pfam PF13614 AAA domain 134 315 1.5E-24 T 14-10-2018 IPR025669 AAA domain YP_pMT113 3b48d18cdaa7cb389c679123fe90992b 424 Gene3D G3DSA:1.10.1660.30 61 130 6.4E-38 T 14-10-2018 YP_pMT113 3b48d18cdaa7cb389c679123fe90992b 424 SUPERFAMILY SSF52540 132 414 4.43E-31 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1786 9ada91f7eb5af6e6a8aa0dfe417ef213 70 Gene3D G3DSA:2.40.50.140 2 70 6.4E-31 T 14-10-2018 YP_1786 9ada91f7eb5af6e6a8aa0dfe417ef213 70 PRINTS PR00050 Cold shock protein signature 43 61 1.9E-17 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1786 9ada91f7eb5af6e6a8aa0dfe417ef213 70 PRINTS PR00050 Cold shock protein signature 7 22 1.9E-17 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1786 9ada91f7eb5af6e6a8aa0dfe417ef213 70 PRINTS PR00050 Cold shock protein signature 28 37 1.9E-17 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_1786 9ada91f7eb5af6e6a8aa0dfe417ef213 70 SUPERFAMILY SSF50249 2 69 1.43E-25 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_1786 9ada91f7eb5af6e6a8aa0dfe417ef213 70 SMART SM00357 6 70 1.1E-30 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 YP_1786 9ada91f7eb5af6e6a8aa0dfe417ef213 70 PIRSF PIRSF002599 1 70 1.5E-26 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 YP_1786 9ada91f7eb5af6e6a8aa0dfe417ef213 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 14-10-2018 IPR019844 Cold-shock conserved site YP_1786 9ada91f7eb5af6e6a8aa0dfe417ef213 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 3.4E-33 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YP_0117 e84c7dbd4d0c47ac33826cb216709828 413 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 217 231 - T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YP_0117 e84c7dbd4d0c47ac33826cb216709828 413 PIRSF PIRSF001434 21 410 6.9E-134 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YP_0117 e84c7dbd4d0c47ac33826cb216709828 413 Gene3D G3DSA:3.90.1150.10 275 412 2.8E-54 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_0117 e84c7dbd4d0c47ac33826cb216709828 413 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 30 408 5.7E-206 T 14-10-2018 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48|MetaCyc: PWY-801 YP_0117 e84c7dbd4d0c47ac33826cb216709828 413 SUPERFAMILY SSF53383 32 408 1.2E-120 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_0117 e84c7dbd4d0c47ac33826cb216709828 413 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 33 408 5.6E-141 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YP_0117 e84c7dbd4d0c47ac33826cb216709828 413 Gene3D G3DSA:3.40.640.10 28 274 1.4E-85 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_4033 56b533cc370c1e28d908debdcf79489b 79 Pfam PF00137 ATP synthase subunit C 11 69 1.5E-9 T 14-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 YP_4033 56b533cc370c1e28d908debdcf79489b 79 Gene3D G3DSA:1.20.20.10 1 79 3.9E-34 T 14-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4033 56b533cc370c1e28d908debdcf79489b 79 SUPERFAMILY SSF81333 3 77 4.58E-18 T 14-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily YP_4033 56b533cc370c1e28d908debdcf79489b 79 Hamap MF_01396 ATP synthase subunit c [atpH]. 10 75 14.323 T 14-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4033 56b533cc370c1e28d908debdcf79489b 79 PRINTS PR00124 ATP synthase C subunit signature 12 31 1.6E-8 T 14-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4033 56b533cc370c1e28d908debdcf79489b 79 PRINTS PR00124 ATP synthase C subunit signature 50 75 1.6E-8 T 14-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4033 56b533cc370c1e28d908debdcf79489b 79 PRINTS PR00124 ATP synthase C subunit signature 33 48 1.6E-8 T 14-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4033 56b533cc370c1e28d908debdcf79489b 79 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 77 1.9E-31 T 14-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 YP_4033 56b533cc370c1e28d908debdcf79489b 79 ProSitePatterns PS00605 ATP synthase c subunit signature. 40 61 - T 14-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_1730 396432e0b3dd7be27d2113e651990ef2 706 SMART SM00245 341 546 3.0E-81 T 14-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 YP_1730 396432e0b3dd7be27d2113e651990ef2 706 SUPERFAMILY SSF52096 181 555 7.29E-70 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YP_1730 396432e0b3dd7be27d2113e651990ef2 706 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 255 335 1.9E-14 T 14-10-2018 IPR001478 PDZ domain GO:0005515 YP_1730 396432e0b3dd7be27d2113e651990ef2 706 SMART SM00228 261 338 1.3E-9 T 14-10-2018 IPR001478 PDZ domain GO:0005515 YP_1730 396432e0b3dd7be27d2113e651990ef2 706 Gene3D G3DSA:3.90.226.10 354 560 1.7E-51 T 14-10-2018 YP_1730 396432e0b3dd7be27d2113e651990ef2 706 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 213 566 2.1E-126 T 14-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 YP_1730 396432e0b3dd7be27d2113e651990ef2 706 Gene3D G3DSA:2.30.42.10 261 353 4.3E-16 T 14-10-2018 YP_1730 396432e0b3dd7be27d2113e651990ef2 706 SUPERFAMILY SSF50156 231 362 1.54E-16 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 YP_1730 396432e0b3dd7be27d2113e651990ef2 706 Pfam PF03572 Peptidase family S41 371 544 5.9E-53 T 14-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 YP_1730 396432e0b3dd7be27d2113e651990ef2 706 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 549 682 7.9E-41 T 14-10-2018 IPR020992 Tail specific protease, C-terminal YP_3722 11329fc322d9040803b144f603640988 316 Pfam PF00288 GHMP kinases N terminal domain 92 157 9.5E-14 T 14-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 YP_3722 11329fc322d9040803b144f603640988 316 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 97 108 - T 14-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 YP_3722 11329fc322d9040803b144f603640988 316 SUPERFAMILY SSF55060 180 296 5.76E-33 T 14-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily YP_3722 11329fc322d9040803b144f603640988 316 Gene3D G3DSA:3.30.230.10 11 174 5.5E-102 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_3722 11329fc322d9040803b144f603640988 316 Gene3D G3DSA:3.30.70.890 175 284 5.5E-102 T 14-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily YP_3722 11329fc322d9040803b144f603640988 316 Pfam PF08544 GHMP kinases C terminal 222 287 2.9E-8 T 14-10-2018 IPR013750 GHMP kinase, C-terminal domain YP_3722 11329fc322d9040803b144f603640988 316 SUPERFAMILY SSF54211 7 185 1.52E-31 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_3722 11329fc322d9040803b144f603640988 316 Hamap MF_00384 Homoserine kinase [thrB]. 11 315 28.232 T 14-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 YP_3722 11329fc322d9040803b144f603640988 316 PRINTS PR00958 Homoserine kinase signature 144 157 1.8E-32 T 14-10-2018 YP_3722 11329fc322d9040803b144f603640988 316 PRINTS PR00958 Homoserine kinase signature 104 119 1.8E-32 T 14-10-2018 YP_3722 11329fc322d9040803b144f603640988 316 PRINTS PR00958 Homoserine kinase signature 182 199 1.8E-32 T 14-10-2018 YP_3722 11329fc322d9040803b144f603640988 316 PRINTS PR00958 Homoserine kinase signature 16 31 1.8E-32 T 14-10-2018 YP_3722 11329fc322d9040803b144f603640988 316 PRINTS PR00958 Homoserine kinase signature 261 276 1.8E-32 T 14-10-2018 YP_3722 11329fc322d9040803b144f603640988 316 TIGRFAM TIGR00191 thrB: homoserine kinase 9 314 6.7E-113 T 14-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 YP_3722 11329fc322d9040803b144f603640988 316 PIRSF PIRSF000676 5 315 4.2E-83 T 14-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 YP_2975 c4e505da6ab02c448d744fe5eb04929d 386 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 384 1.1E-163 T 14-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain YP_2975 c4e505da6ab02c448d744fe5eb04929d 386 SUPERFAMILY SSF56059 1 383 6.99E-93 T 14-10-2018 YP_2975 c4e505da6ab02c448d744fe5eb04929d 386 SUPERFAMILY SSF52440 174 279 1.06E-41 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YP_2975 c4e505da6ab02c448d744fe5eb04929d 386 Gene3D G3DSA:3.30.1490.330 263 343 2.4E-28 T 14-10-2018 YP_1896 ecce4d7b973bd0889acd1a324e03c085 598 Gene3D G3DSA:3.30.1360.30 271 420 1.7E-197 T 14-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 YP_1896 ecce4d7b973bd0889acd1a324e03c085 598 Gene3D G3DSA:2.40.50.140 1 106 1.3E-34 T 14-10-2018 YP_1896 ecce4d7b973bd0889acd1a324e03c085 598 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 584 33.602 T 14-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 YP_1896 ecce4d7b973bd0889acd1a324e03c085 598 Pfam PF02938 GAD domain 307 406 3.0E-30 T 14-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 YP_1896 ecce4d7b973bd0889acd1a324e03c085 598 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 8.6E-18 T 14-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 YP_1896 ecce4d7b973bd0889acd1a324e03c085 598 SUPERFAMILY SSF55681 108 583 2.4E-103 T 14-10-2018 YP_1896 ecce4d7b973bd0889acd1a324e03c085 598 SUPERFAMILY SSF50249 1 105 2.1E-33 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_1896 ecce4d7b973bd0889acd1a324e03c085 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 207 220 3.2E-26 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1896 ecce4d7b973bd0889acd1a324e03c085 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 3.2E-26 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1896 ecce4d7b973bd0889acd1a324e03c085 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 3.2E-26 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1896 ecce4d7b973bd0889acd1a324e03c085 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 190 202 3.2E-26 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1896 ecce4d7b973bd0889acd1a324e03c085 598 Gene3D G3DSA:3.30.930.10 118 578 1.7E-197 T 14-10-2018 YP_1896 ecce4d7b973bd0889acd1a324e03c085 598 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 584 3.6E-272 T 14-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 YP_1896 ecce4d7b973bd0889acd1a324e03c085 598 SUPERFAMILY SSF55261 288 419 2.4E-45 T 14-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 YP_1896 ecce4d7b973bd0889acd1a324e03c085 598 Pfam PF00152 tRNA synthetases class II (D, K and N) 117 558 1.2E-107 T 14-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_2474 47cc99b6332337250f58a1868758fc94 360 TIGRFAM TIGR00802 nico: transition metal uptake transporter, Ni2+-Co2+ transporter (NiCoT) family 60 341 4.1E-126 T 14-10-2018 IPR004688 Transition metal uptake transporter nickel/cobalt GO:0015099|GO:0016021|GO:0035444|GO:0046872 YP_2474 47cc99b6332337250f58a1868758fc94 360 Pfam PF03824 High-affinity nickel-transport protein 56 345 9.4E-91 T 14-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 YP_0683 2955c42571b251bcf4b54deddce69425 434 SUPERFAMILY SSF55031 221 335 1.05E-24 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain YP_0683 2955c42571b251bcf4b54deddce69425 434 Gene3D G3DSA:3.30.70.360 221 335 2.8E-134 T 14-10-2018 YP_0683 2955c42571b251bcf4b54deddce69425 434 Gene3D G3DSA:3.40.630.10 32 410 2.8E-134 T 14-10-2018 YP_0683 2955c42571b251bcf4b54deddce69425 434 PIRSF PIRSF001235 10 419 3.2E-130 T 14-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 YP_0683 2955c42571b251bcf4b54deddce69425 434 Pfam PF01546 Peptidase family M20/M25/M40 85 413 2.0E-26 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 YP_0683 2955c42571b251bcf4b54deddce69425 434 SUPERFAMILY SSF53187 19 414 1.06E-80 T 14-10-2018 YP_0683 2955c42571b251bcf4b54deddce69425 434 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 32 414 3.3E-115 T 14-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 YP_0683 2955c42571b251bcf4b54deddce69425 434 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 84 93 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 YP_2789 1d66b92fb90f5ffd35c987a7998a6f8c 132 Gene3D G3DSA:3.10.180.10 9 128 1.5E-31 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YP_2789 1d66b92fb90f5ffd35c987a7998a6f8c 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 126 5.1E-21 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YP_2789 1d66b92fb90f5ffd35c987a7998a6f8c 132 SUPERFAMILY SSF54593 4 129 1.17E-31 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YP_1546 1d649e1d3eb5614295de3ab05108c382 220 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 5.6E-33 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YP_1546 1d649e1d3eb5614295de3ab05108c382 220 Gene3D G3DSA:1.10.3720.10 4 219 4.4E-61 T 14-10-2018 IPR035906 MetI-like superfamily YP_1546 1d649e1d3eb5614295de3ab05108c382 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 214 4.5E-24 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1546 1d649e1d3eb5614295de3ab05108c382 220 SUPERFAMILY SSF161098 13 206 5.49E-49 T 14-10-2018 IPR035906 MetI-like superfamily YP_2352 c30b1dfab3c434c887134943e35e1911 155 Gene3D G3DSA:2.60.120.370 1 155 2.0E-39 T 14-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily YP_2352 c30b1dfab3c434c887134943e35e1911 155 SUPERFAMILY SSF51197 1 154 3.84E-41 T 14-10-2018 YP_2352 c30b1dfab3c434c887134943e35e1911 155 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 154 6.8E-36 T 14-10-2018 IPR004375 YhcH/YjgK/YiaL family YP_2352 c30b1dfab3c434c887134943e35e1911 155 Pfam PF04074 Domain of unknown function (DUF386) 1 150 1.5E-38 T 14-10-2018 IPR004375 YhcH/YjgK/YiaL family YP_3766 0f035ca5ed578ae8a9cc9e3aecda2687 543 PIRSF PIRSF000538 24 531 1.5E-113 T 14-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YP_3766 0f035ca5ed578ae8a9cc9e3aecda2687 543 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 304 480 9.6E-20 T 14-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YP_3766 0f035ca5ed578ae8a9cc9e3aecda2687 543 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 26 273 7.5E-47 T 14-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YP_3766 0f035ca5ed578ae8a9cc9e3aecda2687 543 Hamap MF_02053 Autoinducer-2 kinase [lsrK]. 28 543 91.316 T 14-10-2018 IPR033676 Autoinducer-2 kinase GO:0009372|GO:0071518 YP_3766 0f035ca5ed578ae8a9cc9e3aecda2687 543 Gene3D G3DSA:3.30.420.40 266 530 1.7E-51 T 14-10-2018 YP_3766 0f035ca5ed578ae8a9cc9e3aecda2687 543 SUPERFAMILY SSF53067 26 276 1.42E-57 T 14-10-2018 YP_3766 0f035ca5ed578ae8a9cc9e3aecda2687 543 Gene3D G3DSA:3.30.420.40 20 264 9.8E-61 T 14-10-2018 YP_3766 0f035ca5ed578ae8a9cc9e3aecda2687 543 SUPERFAMILY SSF53067 275 525 3.3E-48 T 14-10-2018 YP_3960 9a6cf7f920fb4442b48f508c237e1c06 409 SUPERFAMILY SSF103473 7 401 3.14E-50 T 14-10-2018 IPR036259 MFS transporter superfamily YP_3960 9a6cf7f920fb4442b48f508c237e1c06 409 Gene3D G3DSA:1.20.1720.10 19 400 2.6E-64 T 14-10-2018 YP_3960 9a6cf7f920fb4442b48f508c237e1c06 409 Pfam PF07690 Major Facilitator Superfamily 25 364 1.9E-31 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_0100 8e4a42c117e27f03d86867f6a2e608c0 704 Gene3D G3DSA:3.90.70.10 10 158 2.6E-40 T 14-10-2018 YP_0100 8e4a42c117e27f03d86867f6a2e608c0 704 Gene3D G3DSA:1.20.1560.10 163 478 6.0E-64 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_0100 8e4a42c117e27f03d86867f6a2e608c0 704 ProSitePatterns PS00211 ABC transporters family signature. 630 644 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0100 8e4a42c117e27f03d86867f6a2e608c0 704 SUPERFAMILY SSF90123 166 473 5.1E-58 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_0100 8e4a42c117e27f03d86867f6a2e608c0 704 Pfam PF00664 ABC transporter transmembrane region 178 443 5.7E-46 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YP_0100 8e4a42c117e27f03d86867f6a2e608c0 704 Pfam PF03412 Peptidase C39 family 21 149 9.5E-36 T 14-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 YP_0100 8e4a42c117e27f03d86867f6a2e608c0 704 Gene3D G3DSA:3.40.50.300 487 704 2.2E-68 T 14-10-2018 YP_0100 8e4a42c117e27f03d86867f6a2e608c0 704 Pfam PF00005 ABC transporter 510 658 8.2E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0100 8e4a42c117e27f03d86867f6a2e608c0 704 SUPERFAMILY SSF52540 489 700 1.14E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0100 8e4a42c117e27f03d86867f6a2e608c0 704 SMART SM00382 518 702 2.2E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0670 92ae38458b8dcf3e37aaf80d3369ac73 155 Gene3D G3DSA:3.10.450.50 27 155 1.1E-49 T 14-10-2018 YP_0670 92ae38458b8dcf3e37aaf80d3369ac73 155 Pfam PF11533 Protein of unknown function (DUF3225) 32 154 1.2E-61 T 14-10-2018 IPR024507 Protein of unknown function DUF3225 YP_0670 92ae38458b8dcf3e37aaf80d3369ac73 155 SUPERFAMILY SSF54427 31 153 4.5E-40 T 14-10-2018 IPR032710 NTF2-like domain superfamily YP_4007 9240acf8a3d6a0bb107ba66b40cbdf89 46 Pfam PF00468 Ribosomal protein L34 1 44 3.9E-23 T 14-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_4007 9240acf8a3d6a0bb107ba66b40cbdf89 46 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 30 1.0E-10 T 14-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_4007 9240acf8a3d6a0bb107ba66b40cbdf89 46 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 3.9E-26 T 14-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_4007 9240acf8a3d6a0bb107ba66b40cbdf89 46 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 14-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_4007 9240acf8a3d6a0bb107ba66b40cbdf89 46 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.553 T 14-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_3940 e06328a164b7441e685ac5b9119011b0 161 SUPERFAMILY SSF160631 12 158 1.7E-17 T 14-10-2018 YP_3940 e06328a164b7441e685ac5b9119011b0 161 Pfam PF09346 SMI1 / KNR4 family (SUKH-1) 13 152 2.6E-16 T 14-10-2018 IPR018958 Knr4/Smi1-like domain YP_3940 e06328a164b7441e685ac5b9119011b0 161 Gene3D G3DSA:3.40.1580.10 2 161 5.6E-19 T 14-10-2018 IPR037883 Knr4/Smi1-like domain superfamily YP_3940 e06328a164b7441e685ac5b9119011b0 161 SMART SM00860 11 153 9.9E-10 T 14-10-2018 IPR018958 Knr4/Smi1-like domain YP_2237 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 SUPERFAMILY SSF51905 4 338 1.97E-32 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2237 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 317 1.2E-14 T 14-10-2018 YP_2237 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 1.2E-14 T 14-10-2018 YP_2237 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.2E-14 T 14-10-2018 YP_2237 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 115 133 1.2E-14 T 14-10-2018 YP_2237 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 2.5E-7 T 14-10-2018 YP_2237 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.5E-7 T 14-10-2018 YP_2237 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 310 317 2.5E-7 T 14-10-2018 YP_2237 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 338 4.7E-64 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YP_2237 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 Gene3D G3DSA:3.50.50.100 2 409 5.1E-117 T 14-10-2018 YP_0748 7c90c704fe1e6282b6ae3cba310918a2 369 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 51 89 - T 14-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 YP_0748 7c90c704fe1e6282b6ae3cba310918a2 369 SUPERFAMILY SSF53927 4 146 2.3E-47 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 YP_0748 7c90c704fe1e6282b6ae3cba310918a2 369 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 147 366 1.2E-70 T 14-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 YP_0748 7c90c704fe1e6282b6ae3cba310918a2 369 SUPERFAMILY SSF53597 145 363 8.83E-59 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 YP_0748 7c90c704fe1e6282b6ae3cba310918a2 369 Gene3D G3DSA:3.40.430.10 137 368 1.2E-74 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 YP_0748 7c90c704fe1e6282b6ae3cba310918a2 369 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 1 100 1.5E-19 T 14-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain YP_0748 7c90c704fe1e6282b6ae3cba310918a2 369 Gene3D G3DSA:3.40.140.10 1 136 7.7E-45 T 14-10-2018 YP_0748 7c90c704fe1e6282b6ae3cba310918a2 369 Pfam PF01872 RibD C-terminal domain 148 360 1.6E-57 T 14-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 YP_0748 7c90c704fe1e6282b6ae3cba310918a2 369 PIRSF PIRSF006769 1 368 3.6E-127 T 14-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 YP_0748 7c90c704fe1e6282b6ae3cba310918a2 369 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 8 362 2.3E-141 T 14-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 YP_3140 20f71592d740fcfec8aa1e57053d6745 318 Gene3D G3DSA:3.40.50.2300 128 269 5.4E-109 T 14-10-2018 YP_3140 20f71592d740fcfec8aa1e57053d6745 318 Gene3D G3DSA:3.40.50.2300 27 287 5.4E-109 T 14-10-2018 YP_3140 20f71592d740fcfec8aa1e57053d6745 318 Pfam PF13407 Periplasmic binding protein domain 28 275 3.4E-45 T 14-10-2018 IPR025997 Periplasmic binding protein YP_3140 20f71592d740fcfec8aa1e57053d6745 318 SUPERFAMILY SSF53822 23 309 1.85E-72 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_3129 ed73d126e999fffff854995037708c26 442 Gene3D G3DSA:1.10.287.470 216 297 6.6E-18 T 14-10-2018 YP_3129 ed73d126e999fffff854995037708c26 442 Gene3D G3DSA:1.10.287.470 99 191 2.7E-8 T 14-10-2018 YP_3129 ed73d126e999fffff854995037708c26 442 Pfam PF13437 HlyD family secretion protein 298 409 9.5E-14 T 14-10-2018 YP_3129 ed73d126e999fffff854995037708c26 442 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 28 442 1.6E-109 T 14-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 YP_3129 ed73d126e999fffff854995037708c26 442 SUPERFAMILY SSF111369 232 344 2.62E-6 T 14-10-2018 YP_3129 ed73d126e999fffff854995037708c26 442 Gene3D G3DSA:2.40.30.170 335 419 6.6E-18 T 14-10-2018 YP_3129 ed73d126e999fffff854995037708c26 442 Gene3D G3DSA:2.40.30.170 54 64 2.7E-8 T 14-10-2018 YP_3129 ed73d126e999fffff854995037708c26 442 ProSitePatterns PS00543 HlyD family secretion proteins signature. 406 428 - T 14-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 YP_3129 ed73d126e999fffff854995037708c26 442 Gene3D G3DSA:2.40.50.100 298 334 6.6E-18 T 14-10-2018 YP_3129 ed73d126e999fffff854995037708c26 442 Gene3D G3DSA:2.40.50.100 65 98 2.7E-8 T 14-10-2018 YP_3129 ed73d126e999fffff854995037708c26 442 SUPERFAMILY SSF111369 65 124 8.76E-5 T 14-10-2018 YP_3129 ed73d126e999fffff854995037708c26 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 406 421 3.3E-51 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YP_3129 ed73d126e999fffff854995037708c26 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 421 441 3.3E-51 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YP_3129 ed73d126e999fffff854995037708c26 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 35 58 3.3E-51 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YP_3129 ed73d126e999fffff854995037708c26 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 310 331 3.3E-51 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YP_3129 ed73d126e999fffff854995037708c26 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 77 97 3.3E-51 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YP_3129 ed73d126e999fffff854995037708c26 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 343 367 3.3E-51 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YP_3129 ed73d126e999fffff854995037708c26 442 Pfam PF13533 Biotin-lipoyl like 69 112 7.4E-8 T 14-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YP_2757 410fc208b71d7600e69cf70a7c4c8c84 181 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 15 172 3.0E-59 T 14-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YP_2757 410fc208b71d7600e69cf70a7c4c8c84 181 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 19 169 2.4E-57 T 14-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YP_2757 410fc208b71d7600e69cf70a7c4c8c84 181 PIRSF PIRSF028301 9 181 8.5E-61 T 14-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YP_1288 75b2f67f489a700656698a647969b436 273 PRINTS PR00969 Pili chaperone signature 155 170 1.3E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1288 75b2f67f489a700656698a647969b436 273 PRINTS PR00969 Pili chaperone signature 45 54 1.3E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1288 75b2f67f489a700656698a647969b436 273 PRINTS PR00969 Pili chaperone signature 118 135 1.3E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1288 75b2f67f489a700656698a647969b436 273 PRINTS PR00969 Pili chaperone signature 90 111 1.3E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1288 75b2f67f489a700656698a647969b436 273 PRINTS PR00969 Pili chaperone signature 190 205 1.3E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1288 75b2f67f489a700656698a647969b436 273 Gene3D G3DSA:2.60.40.10 175 269 2.6E-29 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_1288 75b2f67f489a700656698a647969b436 273 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 117 134 - T 14-10-2018 IPR018046 Pili assembly chaperone, conserved site YP_1288 75b2f67f489a700656698a647969b436 273 SUPERFAMILY SSF49354 41 172 5.79E-36 T 14-10-2018 IPR008962 PapD-like superfamily YP_1288 75b2f67f489a700656698a647969b436 273 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 45 173 1.1E-36 T 14-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YP_1288 75b2f67f489a700656698a647969b436 273 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 195 265 5.0E-17 T 14-10-2018 IPR016148 Pili assembly chaperone, C-terminal YP_1288 75b2f67f489a700656698a647969b436 273 SUPERFAMILY SSF49584 167 269 2.35E-19 T 14-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_1288 75b2f67f489a700656698a647969b436 273 Gene3D G3DSA:2.60.40.10 45 171 8.8E-42 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_0809 7c8908940156382c6f6bf42dbb322abd 201 TIGRFAM TIGR00615 recR: recombination protein RecR 2 197 2.0E-79 T 14-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 YP_0809 7c8908940156382c6f6bf42dbb322abd 201 Pfam PF02132 RecR protein 41 77 2.1E-14 T 14-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger YP_0809 7c8908940156382c6f6bf42dbb322abd 201 Gene3D G3DSA:1.10.8.420 1 53 6.7E-19 T 14-10-2018 YP_0809 7c8908940156382c6f6bf42dbb322abd 201 Pfam PF13662 Toprim domain 82 172 9.8E-21 T 14-10-2018 IPR006171 TOPRIM domain YP_0809 7c8908940156382c6f6bf42dbb322abd 201 Gene3D G3DSA:3.40.1360.10 77 199 6.8E-38 T 14-10-2018 YP_0809 7c8908940156382c6f6bf42dbb322abd 201 SMART SM00493 81 166 1.1E-17 T 14-10-2018 IPR006171 TOPRIM domain YP_0809 7c8908940156382c6f6bf42dbb322abd 201 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 14-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 YP_0809 7c8908940156382c6f6bf42dbb322abd 201 Hamap MF_00017 Recombination protein RecR [recR]. 1 199 101.192 T 14-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 YP_0809 7c8908940156382c6f6bf42dbb322abd 201 SUPERFAMILY SSF111304 2 199 4.58E-70 T 14-10-2018 IPR023627 Recombination protein RecR YP_0573 87933ac9b489c0a4c758a509db6351d7 328 SUPERFAMILY SSF103481 43 147 1.26E-14 T 14-10-2018 YP_0573 87933ac9b489c0a4c758a509db6351d7 328 Pfam PF00892 EamA-like transporter family 161 273 2.3E-15 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_0573 87933ac9b489c0a4c758a509db6351d7 328 Pfam PF00892 EamA-like transporter family 9 144 1.4E-28 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_3169 6976622be8ba9e18b7411adcfe80511a 176 Gene3D G3DSA:2.60.40.1090 24 175 2.2E-24 T 14-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YP_3169 6976622be8ba9e18b7411adcfe80511a 176 Pfam PF16970 Type-1 fimbrial protein, A 52 175 4.2E-8 T 14-10-2018 IPR039458 Type-1 fimbrial protein, A YP_3169 6976622be8ba9e18b7411adcfe80511a 176 SUPERFAMILY SSF49401 25 175 1.29E-21 T 14-10-2018 IPR008966 Adhesion domain superfamily YP_2493 44d86bdb4d4d937091a3ba6dea487f7a 216 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 20 203 4.8E-69 T 14-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 YP_2493 44d86bdb4d4d937091a3ba6dea487f7a 216 PIRSF PIRSF001296 16 208 8.2E-75 T 14-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 YP_2493 44d86bdb4d4d937091a3ba6dea487f7a 216 Pfam PF02669 K+-transporting ATPase, c chain 21 202 4.9E-67 T 14-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 YP_2493 44d86bdb4d4d937091a3ba6dea487f7a 216 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 17 204 33.922 T 14-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 YP_1830 1432100deb0f7c77aebeda28089410b9 428 TIGRFAM TIGR02304 aden_form_hyp: putative adenylate-forming enzyme 3 424 6.3E-177 T 14-10-2018 IPR012685 Conserved hypothetical protein CHP02304, F390 synthetase-related YP_1830 1432100deb0f7c77aebeda28089410b9 428 Gene3D G3DSA:3.40.50.12780 9 325 4.3E-38 T 14-10-2018 YP_3815 6f828bb966a65b33441b6dba57f40701 213 Pfam PF00043 Glutathione S-transferase, C-terminal domain 105 194 4.6E-11 T 14-10-2018 IPR004046 Glutathione S-transferase, C-terminal YP_3815 6f828bb966a65b33441b6dba57f40701 213 SUPERFAMILY SSF47616 82 208 1.08E-28 T 14-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YP_3815 6f828bb966a65b33441b6dba57f40701 213 Pfam PF02798 Glutathione S-transferase, N-terminal domain 10 81 1.4E-17 T 14-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 YP_3815 6f828bb966a65b33441b6dba57f40701 213 SUPERFAMILY SSF52833 11 110 1.39E-22 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_3815 6f828bb966a65b33441b6dba57f40701 213 Gene3D G3DSA:3.40.30.10 12 200 1.0E-81 T 14-10-2018 YP_3815 6f828bb966a65b33441b6dba57f40701 213 Gene3D G3DSA:1.20.1050.10 89 193 1.0E-81 T 14-10-2018 YP_4022 89affb6eef1f9bf8686cfa0e48def073 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 289 1.3E-29 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_4022 89affb6eef1f9bf8686cfa0e48def073 295 SUPERFAMILY SSF161098 31 286 7.85E-34 T 14-10-2018 IPR035906 MetI-like superfamily YP_4022 89affb6eef1f9bf8686cfa0e48def073 295 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 28 294 1.5E-84 T 14-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 YP_4022 89affb6eef1f9bf8686cfa0e48def073 295 Gene3D G3DSA:1.10.3720.10 14 287 8.8E-29 T 14-10-2018 IPR035906 MetI-like superfamily YP_pMT044 11a8460122d82979ef1854062023b5f0 103 Gene3D G3DSA:1.10.3420.10 1 63 2.1E-5 T 14-10-2018 IPR023292 NTP pyrophosphohydrolase-like domain superfamily YP_0206 45d53e98b9ae88d2567b52bea3a6f87c 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.0E-46 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0206 45d53e98b9ae88d2567b52bea3a6f87c 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.353 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0206 45d53e98b9ae88d2567b52bea3a6f87c 103 SUPERFAMILY SSF54999 5 101 1.26E-36 T 14-10-2018 IPR036838 Ribosomal protein S10 domain superfamily YP_0206 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.2E-18 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0206 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.2E-18 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0206 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.2E-18 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0206 45d53e98b9ae88d2567b52bea3a6f87c 103 Gene3D G3DSA:3.30.70.600 1 103 3.9E-38 T 14-10-2018 IPR036838 Ribosomal protein S10 domain superfamily YP_0206 45d53e98b9ae88d2567b52bea3a6f87c 103 SMART SM01403 7 101 1.0E-56 T 14-10-2018 IPR027486 Ribosomal protein S10 domain YP_0206 45d53e98b9ae88d2567b52bea3a6f87c 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 14-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0206 45d53e98b9ae88d2567b52bea3a6f87c 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 2.1E-35 T 14-10-2018 IPR027486 Ribosomal protein S10 domain YP_0540 52766badbcf14ebc5f572b778ed77f50 251 Pfam PF00326 Prolyl oligopeptidase family 91 236 3.6E-13 T 14-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 YP_0540 52766badbcf14ebc5f572b778ed77f50 251 Gene3D G3DSA:3.40.50.1820 3 251 2.4E-58 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_0540 52766badbcf14ebc5f572b778ed77f50 251 SUPERFAMILY SSF53474 14 251 2.75E-38 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_0318 312328de8eb35b71dc240f5dbabd8b2f 66 SUPERFAMILY SSF54786 1 64 1.88E-11 T 14-10-2018 YP_0318 312328de8eb35b71dc240f5dbabd8b2f 66 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 5 63 9.7E-13 T 14-10-2018 IPR012933 HicA mRNA interferase family GO:0003729 YP_0318 312328de8eb35b71dc240f5dbabd8b2f 66 Gene3D G3DSA:3.30.920.30 1 66 8.9E-20 T 14-10-2018 IPR038570 HicA superfamily YP_0521 0b1cc1b11c4d50058b9d17f65fa89e30 230 SMART SM00479 56 229 1.1E-20 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III YP_0521 0b1cc1b11c4d50058b9d17f65fa89e30 230 Pfam PF00929 Exonuclease 58 219 3.2E-34 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III YP_0521 0b1cc1b11c4d50058b9d17f65fa89e30 230 SUPERFAMILY SSF53098 53 228 5.7E-47 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_0521 0b1cc1b11c4d50058b9d17f65fa89e30 230 Gene3D G3DSA:3.30.420.10 46 230 2.0E-70 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_0521 0b1cc1b11c4d50058b9d17f65fa89e30 230 Hamap MF_00045 Oligoribonuclease [orn]. 52 230 44.517 T 14-10-2018 IPR022894 Oligoribonuclease GO:0000175 YP_0141 45ce53a4442fb25d1dfc86181590990f 135 Pfam PF01479 S4 domain 11 57 1.1E-11 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0141 45ce53a4442fb25d1dfc86181590990f 135 Gene3D G3DSA:3.10.290.10 3 110 3.7E-39 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YP_0141 45ce53a4442fb25d1dfc86181590990f 135 PIRSF PIRSF016821 8 135 1.3E-42 T 14-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 YP_0141 45ce53a4442fb25d1dfc86181590990f 135 SUPERFAMILY SSF55174 10 106 7.59E-31 T 14-10-2018 YP_0141 45ce53a4442fb25d1dfc86181590990f 135 SMART SM00363 11 72 9.8E-8 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_2811 b989c9d2c8daa1939c9314eed8647913 129 Pfam PF11944 Protein of unknown function (DUF3461) 1 125 3.7E-55 T 14-10-2018 IPR020911 Uncharacterised protein family UPF0325 YP_2811 b989c9d2c8daa1939c9314eed8647913 129 ProDom PD080106 UPF0325 YAEH STRUCTURAL ECA1027 VV11856 YPTB3007 PBPRA2971 VV2560 VF1965 VC2264 1 125 2.0E-67 T 14-10-2018 IPR020911 Uncharacterised protein family UPF0325 YP_2811 b989c9d2c8daa1939c9314eed8647913 129 Hamap MF_01519 UPF0325 protein YaeH [yaeH]. 1 126 32.444 T 14-10-2018 IPR020911 Uncharacterised protein family UPF0325 YP_1347 751e77b8d133561edc0edbc5d0444e6a 427 SMART SM00825 Beta-ketoacyl synthase 6 427 1.4E-10 T 14-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YP_1347 751e77b8d133561edc0edbc5d0444e6a 427 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 261 1.4E-24 T 14-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal YP_1347 751e77b8d133561edc0edbc5d0444e6a 427 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 270 382 5.4E-30 T 14-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal YP_1347 751e77b8d133561edc0edbc5d0444e6a 427 Gene3D G3DSA:3.40.47.10 272 414 5.9E-40 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_1347 751e77b8d133561edc0edbc5d0444e6a 427 SUPERFAMILY SSF53901 4 267 1.65E-39 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_1347 751e77b8d133561edc0edbc5d0444e6a 427 Gene3D G3DSA:3.40.47.10 1 270 3.5E-47 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_1347 751e77b8d133561edc0edbc5d0444e6a 427 SUPERFAMILY SSF53901 230 425 9.42E-56 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_0191 ccf9840013c052426342c25d4e070414 204 SUPERFAMILY SSF54534 13 151 2.75E-32 T 14-10-2018 YP_0191 ccf9840013c052426342c25d4e070414 204 Gene3D G3DSA:3.10.50.40 14 165 2.2E-60 T 14-10-2018 YP_0191 ccf9840013c052426342c25d4e070414 204 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 15 147 8.8E-9 T 14-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YP_0191 ccf9840013c052426342c25d4e070414 204 Gene3D G3DSA:2.40.10.330 82 132 2.2E-60 T 14-10-2018 YP_2453 af45e980ff3a1632573fc7a9fed53953 78 TIGRFAM TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH 3 73 6.4E-35 T 14-10-2018 IPR011909 Glutaredoxin-like protein NrdH GO:0045454 YP_2453 af45e980ff3a1632573fc7a9fed53953 78 Gene3D G3DSA:3.40.30.10 1 77 1.0E-27 T 14-10-2018 YP_2453 af45e980ff3a1632573fc7a9fed53953 78 Pfam PF00462 Glutaredoxin 3 61 7.3E-15 T 14-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 YP_2453 af45e980ff3a1632573fc7a9fed53953 78 SUPERFAMILY SSF52833 1 72 3.43E-19 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_1237 16541e3513d00e7b1a944d8529938840 573 Gene3D G3DSA:3.40.50.970 348 573 2.4E-73 T 14-10-2018 YP_1237 16541e3513d00e7b1a944d8529938840 573 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 194 319 1.2E-32 T 14-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 YP_1237 16541e3513d00e7b1a944d8529938840 573 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 171 4.0E-43 T 14-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 YP_1237 16541e3513d00e7b1a944d8529938840 573 Gene3D G3DSA:3.40.50.970 1 178 1.9E-61 T 14-10-2018 YP_1237 16541e3513d00e7b1a944d8529938840 573 Gene3D G3DSA:3.40.50.1220 179 333 7.8E-50 T 14-10-2018 YP_1237 16541e3513d00e7b1a944d8529938840 573 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 380 526 3.9E-40 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 YP_1237 16541e3513d00e7b1a944d8529938840 573 SUPERFAMILY SSF52518 357 558 3.93E-61 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_1237 16541e3513d00e7b1a944d8529938840 573 SUPERFAMILY SSF52518 2 179 4.21E-45 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_1237 16541e3513d00e7b1a944d8529938840 573 SUPERFAMILY SSF52467 182 351 1.42E-45 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily YP_1237 16541e3513d00e7b1a944d8529938840 573 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 14-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 YP_0256 6e8aaaefb5aacf41f9412dd8ea577aea 347 SMART SM01240 7 344 5.1E-139 T 14-10-2018 YP_0256 6e8aaaefb5aacf41f9412dd8ea577aea 347 TIGRFAM TIGR01305 GMP_reduct_1: guanosine monophosphate reductase 2 344 9.7E-198 T 14-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 YP_0256 6e8aaaefb5aacf41f9412dd8ea577aea 347 SUPERFAMILY SSF51412 7 335 3.53E-100 T 14-10-2018 YP_0256 6e8aaaefb5aacf41f9412dd8ea577aea 347 PIRSF PIRSF000235 1 347 2.4E-200 T 14-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 YP_0256 6e8aaaefb5aacf41f9412dd8ea577aea 347 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 176 188 - T 14-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 YP_0256 6e8aaaefb5aacf41f9412dd8ea577aea 347 Hamap MF_00596 GMP reductase [guaC]. 1 345 50.526 T 14-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 YP_0256 6e8aaaefb5aacf41f9412dd8ea577aea 347 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 338 9.4E-79 T 14-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 YP_0256 6e8aaaefb5aacf41f9412dd8ea577aea 347 Gene3D G3DSA:3.20.20.70 1 345 9.5E-116 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_2788 dc621f7c827793c2e9f9147a260f02c3 460 SMART SM00977 381 453 2.4E-26 T 14-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 YP_2788 dc621f7c827793c2e9f9147a260f02c3 460 SUPERFAMILY SSF56037 346 454 5.49E-31 T 14-10-2018 YP_2788 dc621f7c827793c2e9f9147a260f02c3 460 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 24 207 4.2E-53 T 14-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 YP_2788 dc621f7c827793c2e9f9147a260f02c3 460 Pfam PF01171 PP-loop family 24 202 4.6E-58 T 14-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 YP_2788 dc621f7c827793c2e9f9147a260f02c3 460 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 381 425 7.5E-13 T 14-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 YP_2788 dc621f7c827793c2e9f9147a260f02c3 460 Gene3D G3DSA:3.40.50.620 17 237 7.1E-70 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_2788 dc621f7c827793c2e9f9147a260f02c3 460 Gene3D G3DSA:1.20.59.20 238 322 7.6E-29 T 14-10-2018 YP_2788 dc621f7c827793c2e9f9147a260f02c3 460 SUPERFAMILY SSF82829 238 321 3.92E-25 T 14-10-2018 YP_2788 dc621f7c827793c2e9f9147a260f02c3 460 Pfam PF11734 TilS substrate C-terminal domain 381 453 2.4E-26 T 14-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 YP_2788 dc621f7c827793c2e9f9147a260f02c3 460 SUPERFAMILY SSF52402 16 237 8.82E-61 T 14-10-2018 YP_2788 dc621f7c827793c2e9f9147a260f02c3 460 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 12 311 23.358 T 14-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 YP_2788 dc621f7c827793c2e9f9147a260f02c3 460 Pfam PF09179 TilS substrate binding domain 252 319 2.7E-20 T 14-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 YP_0751 540b3025366b7d9155cc2d6f7fe35297 329 SUPERFAMILY SSF55326 4 138 7.15E-34 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YP_0751 540b3025366b7d9155cc2d6f7fe35297 329 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 3 322 29.126 T 14-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 YP_0751 540b3025366b7d9155cc2d6f7fe35297 329 PIRSF PIRSF005303 1 322 2.6E-90 T 14-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 YP_0751 540b3025366b7d9155cc2d6f7fe35297 329 Pfam PF00586 AIR synthase related protein, N-terminal domain 29 138 1.5E-21 T 14-10-2018 IPR016188 PurM-like, N-terminal domain YP_0751 540b3025366b7d9155cc2d6f7fe35297 329 SUPERFAMILY SSF56042 143 303 4.78E-39 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YP_0751 540b3025366b7d9155cc2d6f7fe35297 329 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 4 322 6.4E-116 T 14-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 YP_0751 540b3025366b7d9155cc2d6f7fe35297 329 Gene3D G3DSA:3.90.650.10 145 323 8.4E-58 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YP_0751 540b3025366b7d9155cc2d6f7fe35297 329 Gene3D G3DSA:3.30.1330.10 2 144 8.0E-45 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YP_0751 540b3025366b7d9155cc2d6f7fe35297 329 Pfam PF02769 AIR synthase related protein, C-terminal domain 151 297 2.4E-9 T 14-10-2018 IPR010918 PurM-like, C-terminal domain YP_1184 fb364fc3591f8a1024add451e0cacff3 215 Gene3D G3DSA:3.60.15.10 1 210 2.4E-86 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_1184 fb364fc3591f8a1024add451e0cacff3 215 Pfam PF00753 Metallo-beta-lactamase superfamily 10 192 1.2E-32 T 14-10-2018 IPR001279 Metallo-beta-lactamase YP_1184 fb364fc3591f8a1024add451e0cacff3 215 SUPERFAMILY SSF56281 2 209 4.19E-61 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_1184 fb364fc3591f8a1024add451e0cacff3 215 SMART SM00849 12 192 5.6E-44 T 14-10-2018 IPR001279 Metallo-beta-lactamase YP_2790 fb10a07c09c06985ba1994be1ca44e6a 319 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 151 8.1E-64 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YP_2790 fb10a07c09c06985ba1994be1ca44e6a 319 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 319 1.5E-171 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YP_2790 fb10a07c09c06985ba1994be1ca44e6a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 91 102 3.2E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YP_2790 fb10a07c09c06985ba1994be1ca44e6a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 200 209 3.2E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YP_2790 fb10a07c09c06985ba1994be1ca44e6a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 156 169 3.2E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YP_2790 fb10a07c09c06985ba1994be1ca44e6a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 116 134 3.2E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YP_2790 fb10a07c09c06985ba1994be1ca44e6a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 172 185 3.2E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YP_2790 fb10a07c09c06985ba1994be1ca44e6a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 137 153 3.2E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YP_2790 fb10a07c09c06985ba1994be1ca44e6a 319 Gene3D G3DSA:3.90.226.10 4 319 4.6E-123 T 14-10-2018 YP_2790 fb10a07c09c06985ba1994be1ca44e6a 319 SUPERFAMILY SSF52096 5 318 4.98E-105 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YP_2790 fb10a07c09c06985ba1994be1ca44e6a 319 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 319 51.026 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YP_3502 07f25f784ff714c6b67b5ee6d0554241 376 Gene3D G3DSA:3.30.450.90 36 143 2.9E-25 T 14-10-2018 YP_3502 07f25f784ff714c6b67b5ee6d0554241 376 Pfam PF00437 Type II/IV secretion system protein 98 314 1.0E-40 T 14-10-2018 IPR001482 Type II/IV secretion system protein YP_3502 07f25f784ff714c6b67b5ee6d0554241 376 SUPERFAMILY SSF52540 27 371 1.9E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3502 07f25f784ff714c6b67b5ee6d0554241 376 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 236 250 - T 14-10-2018 IPR001482 Type II/IV secretion system protein YP_3502 07f25f784ff714c6b67b5ee6d0554241 376 Gene3D G3DSA:3.40.50.300 146 376 5.4E-88 T 14-10-2018 YP_3502 07f25f784ff714c6b67b5ee6d0554241 376 SMART SM00382 165 290 0.0088 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3502 07f25f784ff714c6b67b5ee6d0554241 376 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 48 373 1.5E-130 T 14-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 YP_0277 80b258857c1231d3a903803ebe0388ea 181 SUPERFAMILY SSF53271 5 177 1.97E-55 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like YP_0277 80b258857c1231d3a903803ebe0388ea 181 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 10 176 6.8E-74 T 14-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 YP_0277 80b258857c1231d3a903803ebe0388ea 181 Pfam PF00156 Phosphoribosyl transferase domain 15 163 4.4E-25 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 YP_0277 80b258857c1231d3a903803ebe0388ea 181 Gene3D G3DSA:3.40.50.2020 2 180 4.8E-66 T 14-10-2018 YP_2050 49c31dcb2c07bd6e79d68e01fde98d6a 567 Hamap MF_00520 Ribulokinase [araB]. 10 567 52.242 T 14-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 YP_2050 49c31dcb2c07bd6e79d68e01fde98d6a 567 SUPERFAMILY SSF53067 294 557 2.1E-44 T 14-10-2018 YP_2050 49c31dcb2c07bd6e79d68e01fde98d6a 567 Gene3D G3DSA:3.30.420.40 14 535 3.3E-119 T 14-10-2018 YP_2050 49c31dcb2c07bd6e79d68e01fde98d6a 567 Gene3D G3DSA:3.30.420.460 345 546 3.3E-119 T 14-10-2018 YP_2050 49c31dcb2c07bd6e79d68e01fde98d6a 567 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 13 150 2.2E-6 T 14-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YP_2050 49c31dcb2c07bd6e79d68e01fde98d6a 567 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 300 510 1.2E-36 T 14-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YP_2050 49c31dcb2c07bd6e79d68e01fde98d6a 567 SUPERFAMILY SSF53067 13 293 1.14E-21 T 14-10-2018 YP_2050 49c31dcb2c07bd6e79d68e01fde98d6a 567 TIGRFAM TIGR01234 L-ribulokinase: ribulokinase 11 557 1.7E-224 T 14-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 YP_0535 be288a35ebb0ea470c29ff08a4487c36 158 Pfam PF02082 Transcriptional regulator 19 99 2.3E-23 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type YP_0535 be288a35ebb0ea470c29ff08a4487c36 158 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 19 146 1.5E-36 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type YP_0535 be288a35ebb0ea470c29ff08a4487c36 158 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 66 84 - T 14-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site YP_0535 be288a35ebb0ea470c29ff08a4487c36 158 Hamap MF_01177 HTH-type transcriptional repressor NsrR [nsrR]. 18 158 47.127 T 14-10-2018 IPR023761 Transcriptional repressor HTH, NsrR GO:0045892 YP_0535 be288a35ebb0ea470c29ff08a4487c36 158 SUPERFAMILY SSF46785 19 148 4.07E-34 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0535 be288a35ebb0ea470c29ff08a4487c36 158 Gene3D G3DSA:1.10.10.10 15 153 1.2E-33 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1583 57864eac10a658b5cf1804d151869770 333 SUPERFAMILY SSF100950 76 327 2.56E-66 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_1583 57864eac10a658b5cf1804d151869770 333 Gene3D G3DSA:1.10.10.60 22 68 5.6E-16 T 14-10-2018 YP_1583 57864eac10a658b5cf1804d151869770 333 Pfam PF04198 Putative sugar-binding domain 78 327 4.7E-68 T 14-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 YP_1583 57864eac10a658b5cf1804d151869770 333 SUPERFAMILY SSF88659 32 63 1.57E-5 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YP_1583 57864eac10a658b5cf1804d151869770 333 Gene3D G3DSA:3.40.50.1360 69 327 8.4E-73 T 14-10-2018 YP_0445 3dd3bf506c475b3de7ee269a88761137 266 SUPERFAMILY SSF51730 4 265 5.49E-50 T 14-10-2018 IPR029041 FAD-linked oxidoreductase-like YP_0445 3dd3bf506c475b3de7ee269a88761137 266 Pfam PF02219 Methylenetetrahydrofolate reductase 4 265 2.8E-34 T 14-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 YP_0445 3dd3bf506c475b3de7ee269a88761137 266 Gene3D G3DSA:3.20.20.220 1 266 9.3E-44 T 14-10-2018 YP_3890 471e2d3b62443952bfe8d6c5978317a1 486 Gene3D G3DSA:1.20.1730.10 27 483 3.0E-83 T 14-10-2018 IPR038377 Sodium/glucose symporter superfamily YP_3890 471e2d3b62443952bfe8d6c5978317a1 486 Pfam PF00474 Sodium:solute symporter family 38 434 7.0E-131 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 YP_3890 471e2d3b62443952bfe8d6c5978317a1 486 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 416 436 - T 14-10-2018 IPR018212 Sodium/solute symporter, conserved site YP_3890 471e2d3b62443952bfe8d6c5978317a1 486 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 14-10-2018 IPR018212 Sodium/solute symporter, conserved site YP_3890 471e2d3b62443952bfe8d6c5978317a1 486 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 38 434 4.0E-107 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 YP_3890 471e2d3b62443952bfe8d6c5978317a1 486 TIGRFAM TIGR02119 panF: sodium/pantothenate symporter 6 474 7.7E-242 T 14-10-2018 IPR011849 Sodium/pantothenate symporter GO:0015081|GO:0015233|GO:0015887|GO:0016021|GO:0036376 YP_2060 959ecda24e00551adce1a62f9ec836b5 391 Gene3D G3DSA:2.60.120.10 6 275 7.8E-143 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_2060 959ecda24e00551adce1a62f9ec836b5 391 PIRSF PIRSF001480 1 391 5.3E-107 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YP_2060 959ecda24e00551adce1a62f9ec836b5 391 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 3 382 5.4E-119 T 14-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YP_2060 959ecda24e00551adce1a62f9ec836b5 391 ProSitePatterns PS00965 Phosphomannose isomerase type I signature 1. 126 134 - T 14-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YP_2060 959ecda24e00551adce1a62f9ec836b5 391 Gene3D G3DSA:2.60.120.10 301 382 7.8E-143 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_2060 959ecda24e00551adce1a62f9ec836b5 391 SUPERFAMILY SSF51182 1 374 2.0E-102 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily YP_2060 959ecda24e00551adce1a62f9ec836b5 391 Pfam PF01238 Phosphomannose isomerase type I 1 355 7.1E-100 T 14-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YP_2060 959ecda24e00551adce1a62f9ec836b5 391 PRINTS PR00714 Phosphomannose isomerase type I signature 274 293 4.6E-72 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YP_2060 959ecda24e00551adce1a62f9ec836b5 391 PRINTS PR00714 Phosphomannose isomerase type I signature 255 274 4.6E-72 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YP_2060 959ecda24e00551adce1a62f9ec836b5 391 PRINTS PR00714 Phosphomannose isomerase type I signature 4 22 4.6E-72 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YP_2060 959ecda24e00551adce1a62f9ec836b5 391 PRINTS PR00714 Phosphomannose isomerase type I signature 236 255 4.6E-72 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YP_2060 959ecda24e00551adce1a62f9ec836b5 391 PRINTS PR00714 Phosphomannose isomerase type I signature 32 47 4.6E-72 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YP_2060 959ecda24e00551adce1a62f9ec836b5 391 PRINTS PR00714 Phosphomannose isomerase type I signature 81 102 4.6E-72 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YP_2060 959ecda24e00551adce1a62f9ec836b5 391 PRINTS PR00714 Phosphomannose isomerase type I signature 126 149 4.6E-72 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YP_2060 959ecda24e00551adce1a62f9ec836b5 391 PRINTS PR00714 Phosphomannose isomerase type I signature 220 235 4.6E-72 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YP_2060 959ecda24e00551adce1a62f9ec836b5 391 Gene3D G3DSA:1.10.441.10 150 300 7.8E-143 T 14-10-2018 YP_2060 959ecda24e00551adce1a62f9ec836b5 391 ProSitePatterns PS00966 Phosphomannose isomerase type I signature 2. 255 280 - T 14-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YP_3497 3c10dd0306bbc91465f6b1f42b38688e 223 SUPERFAMILY SSF52972 24 221 4.71E-75 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like YP_3497 3c10dd0306bbc91465f6b1f42b38688e 223 Hamap MF_01405 dITP/XTP pyrophosphatase. 28 222 50.278 T 14-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 YP_3497 3c10dd0306bbc91465f6b1f42b38688e 223 Pfam PF01725 Ham1 family 30 218 3.1E-57 T 14-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 YP_3497 3c10dd0306bbc91465f6b1f42b38688e 223 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 29 220 4.5E-67 T 14-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 YP_3497 3c10dd0306bbc91465f6b1f42b38688e 223 Gene3D G3DSA:3.90.950.10 14 223 4.9E-84 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like YP_3256 bb172f88716d37773df4154454900a00 357 Gene3D G3DSA:2.40.50.940 223 348 6.9E-26 T 14-10-2018 YP_3256 bb172f88716d37773df4154454900a00 357 SMART SM00382 29 212 3.5E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3256 bb172f88716d37773df4154454900a00 357 SUPERFAMILY SSF52540 4 243 4.38E-85 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3256 bb172f88716d37773df4154454900a00 357 Pfam PF08402 TOBE domain 278 347 6.4E-5 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YP_3256 bb172f88716d37773df4154454900a00 357 SUPERFAMILY SSF50331 237 355 4.62E-26 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YP_3256 bb172f88716d37773df4154454900a00 357 Pfam PF00005 ABC transporter 21 162 2.0E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3256 bb172f88716d37773df4154454900a00 357 Gene3D G3DSA:2.40.50.140 285 339 6.9E-26 T 14-10-2018 YP_3256 bb172f88716d37773df4154454900a00 357 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3256 bb172f88716d37773df4154454900a00 357 Gene3D G3DSA:3.40.50.300 3 222 6.5E-63 T 14-10-2018 YP_0763 dd10ab48f62baf67560081fc97f025bc 302 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 8 290 18.338 T 14-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 YP_0763 dd10ab48f62baf67560081fc97f025bc 302 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 10 288 2.5E-91 T 14-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 YP_0763 dd10ab48f62baf67560081fc97f025bc 302 Pfam PF01040 UbiA prenyltransferase family 25 273 2.3E-59 T 14-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 YP_0763 dd10ab48f62baf67560081fc97f025bc 302 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 63 85 - T 14-10-2018 IPR030470 UbiA prenyltransferase conserved site YP_0763 dd10ab48f62baf67560081fc97f025bc 302 Gene3D G3DSA:1.10.357.140 20 187 1.6E-18 T 14-10-2018 YP_2759 96182e21f02306810c4d66bf3cb9c242 189 Pfam PF05638 Type VI secretion system effector, Hcp 34 164 3.3E-40 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_2759 96182e21f02306810c4d66bf3cb9c242 189 Gene3D G3DSA:2.30.110.20 32 189 1.3E-65 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_2759 96182e21f02306810c4d66bf3cb9c242 189 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 29 173 4.9E-20 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_2759 96182e21f02306810c4d66bf3cb9c242 189 SUPERFAMILY SSF141452 30 187 1.7E-51 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_3849 19e4733791a7e5190cb5047a5d1557de 136 Hamap MF_00954 Regulator of nucleoside diphosphate kinase [rnk]. 1 136 43.104 T 14-10-2018 IPR028625 Regulator of nucleoside diphosphate kinase GO:0070063 YP_3849 19e4733791a7e5190cb5047a5d1557de 136 SUPERFAMILY SSF54534 49 126 6.15E-18 T 14-10-2018 YP_3849 19e4733791a7e5190cb5047a5d1557de 136 Pfam PF14760 Rnk N-terminus 4 43 2.0E-12 T 14-10-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain YP_3849 19e4733791a7e5190cb5047a5d1557de 136 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 50 124 9.6E-18 T 14-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 YP_3849 19e4733791a7e5190cb5047a5d1557de 136 Gene3D G3DSA:1.10.286.20 1 44 1.0E-25 T 14-10-2018 YP_3849 19e4733791a7e5190cb5047a5d1557de 136 PIRSF PIRSF006092 28 128 7.2E-23 T 14-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 YP_3849 19e4733791a7e5190cb5047a5d1557de 136 Gene3D G3DSA:3.10.50.30 45 136 3.0E-30 T 14-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 YP_3841 61dd9be5242ae58664770b4e9256ac00 90 Pfam PF00381 PTS HPr component phosphorylation site 4 84 5.7E-22 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_3841 61dd9be5242ae58664770b4e9256ac00 90 Gene3D G3DSA:3.30.1340.10 1 85 5.1E-31 T 14-10-2018 IPR035895 HPr-like superfamily YP_3841 61dd9be5242ae58664770b4e9256ac00 90 SUPERFAMILY SSF55594 4 90 1.02E-23 T 14-10-2018 IPR035895 HPr-like superfamily YP_3841 61dd9be5242ae58664770b4e9256ac00 90 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 4 84 5.2E-21 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_3841 61dd9be5242ae58664770b4e9256ac00 90 PRINTS PR00107 Phosphocarrier protein signature 55 72 5.9E-10 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_3841 61dd9be5242ae58664770b4e9256ac00 90 PRINTS PR00107 Phosphocarrier protein signature 40 55 5.9E-10 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_3841 61dd9be5242ae58664770b4e9256ac00 90 PRINTS PR00107 Phosphocarrier protein signature 14 30 5.9E-10 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like YP_3841 61dd9be5242ae58664770b4e9256ac00 90 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 14 21 - T 14-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YP_2691 f1370dce67e3d6b8788de54e8b06179d 525 Gene3D G3DSA:3.30.2010.10 110 188 1.2E-6 T 14-10-2018 YP_2691 f1370dce67e3d6b8788de54e8b06179d 525 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 35 522 40.519 T 14-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 YP_2691 f1370dce67e3d6b8788de54e8b06179d 525 Pfam PF01435 Peptidase family M48 109 296 1.3E-27 T 14-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 YP_2691 f1370dce67e3d6b8788de54e8b06179d 525 Pfam PF07720 Tetratricopeptide repeat 353 370 0.026 T 14-10-2018 IPR011716 Tetratricopeptide TPR-3 YP_2691 f1370dce67e3d6b8788de54e8b06179d 525 Gene3D G3DSA:1.25.40.10 228 522 1.8E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2691 f1370dce67e3d6b8788de54e8b06179d 525 Pfam PF14559 Tetratricopeptide repeat 391 456 7.2E-8 T 14-10-2018 YP_2691 f1370dce67e3d6b8788de54e8b06179d 525 SUPERFAMILY SSF48452 346 471 2.43E-11 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2348 b49a532f865cb1655ca9fb0b0136bb04 330 Gene3D G3DSA:3.40.50.2300 161 292 1.7E-57 T 14-10-2018 YP_2348 b49a532f865cb1655ca9fb0b0136bb04 330 SMART SM00354 5 75 6.0E-17 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2348 b49a532f865cb1655ca9fb0b0136bb04 330 SUPERFAMILY SSF47413 4 53 7.31E-11 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_2348 b49a532f865cb1655ca9fb0b0136bb04 330 Gene3D G3DSA:3.40.50.2300 67 309 1.7E-57 T 14-10-2018 YP_2348 b49a532f865cb1655ca9fb0b0136bb04 330 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 311 3.6E-23 T 14-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain YP_2348 b49a532f865cb1655ca9fb0b0136bb04 330 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 50 3.2E-17 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2348 b49a532f865cb1655ca9fb0b0136bb04 330 Gene3D G3DSA:1.10.260.40 1 61 4.5E-15 T 14-10-2018 YP_2348 b49a532f865cb1655ca9fb0b0136bb04 330 SUPERFAMILY SSF53822 62 317 3.81E-51 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_2348 b49a532f865cb1655ca9fb0b0136bb04 330 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 14-10-2018 YP_0851 a48298f45699905d85ede1289c3be480 164 SUPERFAMILY SSF50891 1 162 2.48E-59 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily YP_0851 a48298f45699905d85ede1289c3be480 164 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 161 8.2E-48 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 YP_0851 a48298f45699905d85ede1289c3be480 164 PIRSF PIRSF001467 1 164 3.3E-29 T 14-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 YP_0851 a48298f45699905d85ede1289c3be480 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 2.1E-11 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 YP_0851 a48298f45699905d85ede1289c3be480 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 2.1E-11 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 YP_0851 a48298f45699905d85ede1289c3be480 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 2.1E-11 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 YP_0851 a48298f45699905d85ede1289c3be480 164 Gene3D G3DSA:2.40.100.10 1 164 8.0E-72 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily YP_0851 a48298f45699905d85ede1289c3be480 164 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 14-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 YP_2297 9c3b30dad388d79d1b45b0dad1a8fe3e 346 Gene3D G3DSA:3.40.50.2300 59 326 1.7E-51 T 14-10-2018 YP_2297 9c3b30dad388d79d1b45b0dad1a8fe3e 346 SMART SM00354 7 78 7.1E-8 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2297 9c3b30dad388d79d1b45b0dad1a8fe3e 346 Pfam PF13377 Periplasmic binding protein-like domain 175 328 1.1E-21 T 14-10-2018 YP_2297 9c3b30dad388d79d1b45b0dad1a8fe3e 346 Gene3D G3DSA:1.10.260.40 1 51 1.1E-13 T 14-10-2018 YP_2297 9c3b30dad388d79d1b45b0dad1a8fe3e 346 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 52 1.0E-9 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2297 9c3b30dad388d79d1b45b0dad1a8fe3e 346 Gene3D G3DSA:3.40.50.2300 166 311 1.7E-51 T 14-10-2018 YP_2297 9c3b30dad388d79d1b45b0dad1a8fe3e 346 SUPERFAMILY SSF53822 67 327 4.71E-41 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_2297 9c3b30dad388d79d1b45b0dad1a8fe3e 346 SUPERFAMILY SSF47413 6 58 1.03E-10 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_pCD51 c24f304239fb2fe7b62abf318be5be46 95 TIGRFAM TIGR02573 LcrG_PcrG: type III secretion protein LcrG 7 95 6.9E-46 T 14-10-2018 IPR009863 Type III secretion protein, LcrG YP_pCD51 c24f304239fb2fe7b62abf318be5be46 95 ProDom PD020116 PLASMID ACRG TYPE III G SECRETION REGULATOR LCRG LOCUS RESPONSE 11 95 2.0E-43 T 14-10-2018 IPR009863 Type III secretion protein, LcrG YP_pCD51 c24f304239fb2fe7b62abf318be5be46 95 Pfam PF07216 LcrG protein 5 95 9.3E-46 T 14-10-2018 IPR009863 Type III secretion protein, LcrG YP_0007 4d111f438c7fc1cfc812338d3e7a6872 139 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 139 32.831 T 14-10-2018 IPR023064 D-ribose pyranase GO:0016872 YP_0007 4d111f438c7fc1cfc812338d3e7a6872 139 SUPERFAMILY SSF102546 1 139 3.14E-44 T 14-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 YP_0007 4d111f438c7fc1cfc812338d3e7a6872 139 Pfam PF05025 RbsD / FucU transport protein family 1 138 3.2E-49 T 14-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 YP_0007 4d111f438c7fc1cfc812338d3e7a6872 139 Gene3D G3DSA:3.40.1650.10 8 136 2.1E-36 T 14-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 YP_3135 e1de6f8b864938d0f314aecb320e1efa 215 Gene3D G3DSA:1.10.357.10 57 214 1.8E-42 T 14-10-2018 YP_3135 e1de6f8b864938d0f314aecb320e1efa 215 SUPERFAMILY SSF46689 5 81 1.65E-12 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3135 e1de6f8b864938d0f314aecb320e1efa 215 Gene3D G3DSA:1.10.10.60 5 56 1.2E-22 T 14-10-2018 YP_3135 e1de6f8b864938d0f314aecb320e1efa 215 Hamap MF_01190 HTH-type transcriptional repressor FabR [fabR]. 5 213 52.821 T 14-10-2018 IPR023764 Transcriptional repressor HTH, FabR YP_3135 e1de6f8b864938d0f314aecb320e1efa 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 62 2.5E-7 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YP_3269 d60c092c4751d3d72abdb6a607389594 233 Pfam PF02036 SCP-2 sterol transfer family 51 145 1.2E-19 T 14-10-2018 IPR003033 SCP2 sterol-binding domain YP_3269 d60c092c4751d3d72abdb6a607389594 233 SUPERFAMILY SSF55718 54 150 2.44E-7 T 14-10-2018 IPR036527 SCP2 sterol-binding domain superfamily YP_1724 44221c641250e0044c535f0f170e464c 180 SMART SM00972 122 177 2.9E-19 T 14-10-2018 IPR007893 Spore coat protein U YP_1724 44221c641250e0044c535f0f170e464c 180 Pfam PF05229 Spore Coat Protein U domain 35 177 1.1E-34 T 14-10-2018 IPR007893 Spore coat protein U YP_0576 c02094da221709d9151e961bfd9fac8a 220 Gene3D G3DSA:1.10.10.10 122 218 1.8E-28 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0576 c02094da221709d9151e961bfd9fac8a 220 SMART SM00862 145 216 2.7E-23 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_0576 c02094da221709d9151e961bfd9fac8a 220 Pfam PF00072 Response regulator receiver domain 4 113 2.6E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0576 c02094da221709d9151e961bfd9fac8a 220 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 5.9E-21 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_0576 c02094da221709d9151e961bfd9fac8a 220 SMART SM00448 1 112 5.2E-39 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0576 c02094da221709d9151e961bfd9fac8a 220 SUPERFAMILY SSF52172 1 175 2.2E-39 T 14-10-2018 IPR011006 CheY-like superfamily YP_0576 c02094da221709d9151e961bfd9fac8a 220 Gene3D G3DSA:3.40.50.2300 1 121 5.4E-40 T 14-10-2018 YP_2906 f2e69ba2d1b39804de49bf43176175ae 169 Gene3D G3DSA:3.30.2010.10 55 161 1.1E-7 T 14-10-2018 YP_2906 f2e69ba2d1b39804de49bf43176175ae 169 Pfam PF01863 Protein of unknown function DUF45 46 149 1.9E-11 T 14-10-2018 IPR002725 Protein of unknown function DUF45 YP_2948 0a683b50ba381f78349217e67d6553bb 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 2.3E-18 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2948 0a683b50ba381f78349217e67d6553bb 310 Gene3D G3DSA:3.40.190.290 92 293 1.7E-55 T 14-10-2018 YP_2948 0a683b50ba381f78349217e67d6553bb 310 Pfam PF03466 LysR substrate binding domain 89 293 9.3E-39 T 14-10-2018 IPR005119 LysR, substrate-binding YP_2948 0a683b50ba381f78349217e67d6553bb 310 SUPERFAMILY SSF46785 4 84 1.8E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_2948 0a683b50ba381f78349217e67d6553bb 310 Gene3D G3DSA:1.10.10.10 3 87 7.6E-28 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2948 0a683b50ba381f78349217e67d6553bb 310 SUPERFAMILY SSF53850 89 295 5.07E-41 T 14-10-2018 YP_1453 72d1924587f5db8d45dd9e04be969e07 246 Gene3D G3DSA:3.40.50.720 1 245 4.7E-72 T 14-10-2018 YP_1453 72d1924587f5db8d45dd9e04be969e07 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 130 158 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YP_1453 72d1924587f5db8d45dd9e04be969e07 246 SUPERFAMILY SSF51735 4 245 3.95E-72 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1453 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 2.7E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1453 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 2.7E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1453 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 116 132 2.7E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1453 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 181 2.7E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1453 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 162 2.7E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1453 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.7E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1453 72d1924587f5db8d45dd9e04be969e07 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 245 6.5E-57 T 14-10-2018 YP_1453 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 69 80 5.8E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1453 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 130 5.8E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1453 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 162 5.8E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1676 aed13abf9056a07fa860f5501295086e 320 SUPERFAMILY SSF46785 1 83 3.93E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1676 aed13abf9056a07fa860f5501295086e 320 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 6.0E-17 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_1676 aed13abf9056a07fa860f5501295086e 320 Pfam PF03466 LysR substrate binding domain 86 283 5.6E-41 T 14-10-2018 IPR005119 LysR, substrate-binding YP_1676 aed13abf9056a07fa860f5501295086e 320 Gene3D G3DSA:3.40.190.10 95 276 4.8E-20 T 14-10-2018 YP_1676 aed13abf9056a07fa860f5501295086e 320 Gene3D G3DSA:3.40.190.10 163 265 4.8E-20 T 14-10-2018 YP_1676 aed13abf9056a07fa860f5501295086e 320 Gene3D G3DSA:1.10.10.10 1 84 9.9E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1676 aed13abf9056a07fa860f5501295086e 320 SUPERFAMILY SSF53850 86 287 5.25E-31 T 14-10-2018 YP_pCRY28 c02b2c3f15a8a4bc35e20ce17062fee9 286 Pfam PF10263 SprT-like family 42 141 7.7E-6 T 14-10-2018 IPR006640 SprT-like YP_0506 c31487beecc4cf7dbb48bd96810885fd 548 Gene3D G3DSA:3.50.7.10 192 372 1.9E-239 T 14-10-2018 IPR027409 GroEL-like apical domain superfamily YP_0506 c31487beecc4cf7dbb48bd96810885fd 548 SUPERFAMILY SSF54849 137 203 4.81E-24 T 14-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily YP_0506 c31487beecc4cf7dbb48bd96810885fd 548 PRINTS PR00298 60kDa chaperonin signature 350 375 2.5E-74 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 YP_0506 c31487beecc4cf7dbb48bd96810885fd 548 PRINTS PR00298 60kDa chaperonin signature 83 110 2.5E-74 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 YP_0506 c31487beecc4cf7dbb48bd96810885fd 548 PRINTS PR00298 60kDa chaperonin signature 27 53 2.5E-74 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 YP_0506 c31487beecc4cf7dbb48bd96810885fd 548 PRINTS PR00298 60kDa chaperonin signature 398 419 2.5E-74 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 YP_0506 c31487beecc4cf7dbb48bd96810885fd 548 PRINTS PR00298 60kDa chaperonin signature 268 291 2.5E-74 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 YP_0506 c31487beecc4cf7dbb48bd96810885fd 548 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 5.0E-255 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 YP_0506 c31487beecc4cf7dbb48bd96810885fd 548 SUPERFAMILY SSF48592 7 521 1.91E-77 T 14-10-2018 IPR027413 GroEL-like equatorial domain superfamily YP_0506 c31487beecc4cf7dbb48bd96810885fd 548 Gene3D G3DSA:3.30.260.10 136 410 1.9E-239 T 14-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily YP_0506 c31487beecc4cf7dbb48bd96810885fd 548 SUPERFAMILY SSF52029 185 376 8.02E-82 T 14-10-2018 IPR027409 GroEL-like apical domain superfamily YP_0506 c31487beecc4cf7dbb48bd96810885fd 548 Gene3D G3DSA:1.10.560.10 8 521 1.9E-239 T 14-10-2018 IPR027413 GroEL-like equatorial domain superfamily YP_0506 c31487beecc4cf7dbb48bd96810885fd 548 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 6.7E-93 T 14-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 YP_0506 c31487beecc4cf7dbb48bd96810885fd 548 Hamap MF_00600 60 kDa chaperonin [groL]. 2 547 41.403 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 YP_0506 c31487beecc4cf7dbb48bd96810885fd 548 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 14-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 YP_1633 f3fd627f6538eaebb1471f7e30787f3c 522 SMART SM01091 436 517 6.0E-21 T 14-10-2018 IPR005170 Transporter-associated domain YP_1633 f3fd627f6538eaebb1471f7e30787f3c 522 Gene3D G3DSA:3.30.465.10 442 517 1.8E-16 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YP_1633 f3fd627f6538eaebb1471f7e30787f3c 522 SUPERFAMILY SSF56176 438 520 1.06E-17 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YP_1633 f3fd627f6538eaebb1471f7e30787f3c 522 Pfam PF00571 CBS domain 373 424 1.4E-5 T 14-10-2018 IPR000644 CBS domain YP_1633 f3fd627f6538eaebb1471f7e30787f3c 522 Pfam PF03741 Integral membrane protein TerC family 22 211 1.1E-48 T 14-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 YP_1633 f3fd627f6538eaebb1471f7e30787f3c 522 Gene3D G3DSA:3.10.580.10 286 441 2.8E-44 T 14-10-2018 YP_1633 f3fd627f6538eaebb1471f7e30787f3c 522 Pfam PF03471 Transporter associated domain 439 516 4.9E-17 T 14-10-2018 IPR005170 Transporter-associated domain YP_1633 f3fd627f6538eaebb1471f7e30787f3c 522 SUPERFAMILY SSF54631 293 427 3.92E-24 T 14-10-2018 YP_1261 68ff700802ade253dec780e778cbeeba 377 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 50 375 1.1E-146 T 14-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 YP_1261 68ff700802ade253dec780e778cbeeba 377 SMART SM00382 44 227 1.5E-18 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1261 68ff700802ade253dec780e778cbeeba 377 SUPERFAMILY SSF50331 252 375 2.28E-17 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YP_1261 68ff700802ade253dec780e778cbeeba 377 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1261 68ff700802ade253dec780e778cbeeba 377 Gene3D G3DSA:2.40.50.940 239 301 7.1E-11 T 14-10-2018 YP_1261 68ff700802ade253dec780e778cbeeba 377 Pfam PF00005 ABC transporter 36 177 2.3E-39 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1261 68ff700802ade253dec780e778cbeeba 377 Gene3D G3DSA:2.40.50.140 302 356 7.1E-11 T 14-10-2018 YP_1261 68ff700802ade253dec780e778cbeeba 377 SUPERFAMILY SSF52540 19 257 1.02E-88 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1261 68ff700802ade253dec780e778cbeeba 377 Gene3D G3DSA:3.40.50.300 19 238 4.1E-71 T 14-10-2018 YP_1261 68ff700802ade253dec780e778cbeeba 377 Pfam PF08402 TOBE domain 295 375 3.5E-20 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 Gene3D G3DSA:3.30.450.40 1 163 1.3E-44 T 14-10-2018 IPR029016 GAF-like domain superfamily YP_2873 e7d096438b66f103211ed128b9a01ef7 748 SMART SM00065 17 164 2.6E-26 T 14-10-2018 IPR003018 GAF domain GO:0005515 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 630 645 7.6E-25 T 14-10-2018 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 666 678 7.6E-25 T 14-10-2018 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 613 628 7.6E-25 T 14-10-2018 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 459 478 7.6E-25 T 14-10-2018 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 SUPERFAMILY SSF52009 293 413 3.66E-26 T 14-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 Pfam PF05524 PEP-utilising enzyme, N-terminal 174 294 1.1E-22 T 14-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 351 362 - T 14-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 Gene3D G3DSA:3.20.20.60 400 741 4.4E-101 T 14-10-2018 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 Gene3D G3DSA:3.50.30.10 175 399 1.1E-55 T 14-10-2018 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 613 631 - T 14-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 419 707 6.1E-103 T 14-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 Pfam PF01590 GAF domain 18 151 1.7E-15 T 14-10-2018 IPR003018 GAF domain GO:0005515 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 SUPERFAMILY SSF55781 4 159 1.74E-30 T 14-10-2018 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 175 730 1.3E-130 T 14-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 SUPERFAMILY SSF51621 420 714 6.54E-95 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 SUPERFAMILY SSF47831 202 309 8.24E-26 T 14-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 Pfam PF00391 PEP-utilising enzyme, mobile domain 320 391 7.2E-16 T 14-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 YP_2873 e7d096438b66f103211ed128b9a01ef7 748 Gene3D G3DSA:1.10.274.10 190 313 1.1E-55 T 14-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 YP_2238 6be613777a2c2558c790c84c287d8c3e 180 Hamap MF_01047 UPF0227 protein YcfP [ycfP]. 1 178 50.987 T 14-10-2018 IPR022987 Uncharacterised protein family UPF0227 YP_2238 6be613777a2c2558c790c84c287d8c3e 180 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 177 1.7E-71 T 14-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YP_2238 6be613777a2c2558c790c84c287d8c3e 180 SUPERFAMILY SSF53474 1 176 4.39E-8 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_2238 6be613777a2c2558c790c84c287d8c3e 180 Gene3D G3DSA:3.40.50.1820 1 179 1.2E-18 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1181 578d5548b3219df4688d269372e5ba47 466 Pfam PF01336 OB-fold nucleic acid binding domain 20 99 1.7E-11 T 14-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 YP_1181 578d5548b3219df4688d269372e5ba47 466 SUPERFAMILY SSF55681 104 464 3.98E-96 T 14-10-2018 YP_1181 578d5548b3219df4688d269372e5ba47 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 220 3.2E-14 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1181 578d5548b3219df4688d269372e5ba47 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 381 397 3.2E-14 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1181 578d5548b3219df4688d269372e5ba47 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 224 237 3.2E-14 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1181 578d5548b3219df4688d269372e5ba47 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 421 435 3.2E-14 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1181 578d5548b3219df4688d269372e5ba47 466 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 6 466 46.548 T 14-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 YP_1181 578d5548b3219df4688d269372e5ba47 466 SUPERFAMILY SSF50249 14 102 4.07E-18 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_1181 578d5548b3219df4688d269372e5ba47 466 Gene3D G3DSA:2.40.50.140 2 104 1.4E-21 T 14-10-2018 YP_1181 578d5548b3219df4688d269372e5ba47 466 Gene3D G3DSA:3.30.930.10 109 465 1.6E-109 T 14-10-2018 YP_1181 578d5548b3219df4688d269372e5ba47 466 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 460 6.5E-83 T 14-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_1181 578d5548b3219df4688d269372e5ba47 466 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 5 466 7.2E-209 T 14-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 YP_3385 4609d0777af0ed097d9903b1346a4eac 329 SUPERFAMILY SSF53807 42 308 2.59E-65 T 14-10-2018 YP_3385 4609d0777af0ed097d9903b1346a4eac 329 Gene3D G3DSA:3.40.50.1980 57 316 6.0E-91 T 14-10-2018 YP_3385 4609d0777af0ed097d9903b1346a4eac 329 Gene3D G3DSA:3.40.50.12260 194 299 6.0E-91 T 14-10-2018 YP_3385 4609d0777af0ed097d9903b1346a4eac 329 Pfam PF01497 Periplasmic binding protein 64 299 4.5E-31 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain YP_3166 b09ce7dd2970dd1d9f8636616b13281b 455 Pfam PF00419 Fimbrial protein 276 455 3.0E-29 T 14-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YP_3166 b09ce7dd2970dd1d9f8636616b13281b 455 PIRSF PIRSF029766 30 455 8.5E-186 T 14-10-2018 IPR011228 Uncharacterised conserved protein UCP029766 YP_3166 b09ce7dd2970dd1d9f8636616b13281b 455 SUPERFAMILY SSF49401 285 453 5.97E-11 T 14-10-2018 IPR008966 Adhesion domain superfamily YP_3166 b09ce7dd2970dd1d9f8636616b13281b 455 Gene3D G3DSA:2.60.40.1090 283 453 8.0E-10 T 14-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YP_2862 ac57ce22cdad5dd322dbb7427f60c60e 394 SUPERFAMILY SSF47413 54 113 1.77E-17 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_2862 ac57ce22cdad5dd322dbb7427f60c60e 394 SUPERFAMILY SSF53822 114 387 5.5E-85 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_2862 ac57ce22cdad5dd322dbb7427f60c60e 394 SMART SM00354 55 125 6.2E-36 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2862 ac57ce22cdad5dd322dbb7427f60c60e 394 Gene3D G3DSA:3.40.50.2300 214 343 6.3E-70 T 14-10-2018 YP_2862 ac57ce22cdad5dd322dbb7427f60c60e 394 Pfam PF00356 Bacterial regulatory proteins, lacI family 57 102 3.0E-20 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2862 ac57ce22cdad5dd322dbb7427f60c60e 394 Gene3D G3DSA:1.10.260.40 57 113 3.9E-22 T 14-10-2018 YP_2862 ac57ce22cdad5dd322dbb7427f60c60e 394 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 67 77 4.1E-7 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2862 ac57ce22cdad5dd322dbb7427f60c60e 394 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 57 67 4.1E-7 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2862 ac57ce22cdad5dd322dbb7427f60c60e 394 Pfam PF13377 Periplasmic binding protein-like domain 222 383 4.6E-33 T 14-10-2018 YP_2862 ac57ce22cdad5dd322dbb7427f60c60e 394 ProSitePatterns PS00356 LacI-type HTH domain signature. 58 76 - T 14-10-2018 YP_2862 ac57ce22cdad5dd322dbb7427f60c60e 394 Gene3D G3DSA:3.40.50.2300 115 359 6.3E-70 T 14-10-2018 YP_2006 8ebb21760318a9c97ac35ecdd077c17c 521 PIRSF PIRSF001373 1 521 5.9E-250 T 14-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YP_2006 8ebb21760318a9c97ac35ecdd077c17c 521 Gene3D G3DSA:3.60.120.10 2 521 3.3E-197 T 14-10-2018 IPR005801 ADC synthase GO:0009058 YP_2006 8ebb21760318a9c97ac35ecdd077c17c 521 Pfam PF04715 Anthranilate synthase component I, N terminal region 20 192 8.1E-16 T 14-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YP_2006 8ebb21760318a9c97ac35ecdd077c17c 521 PRINTS PR00095 Anthranilate synthase component I signature 365 378 1.3E-24 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YP_2006 8ebb21760318a9c97ac35ecdd077c17c 521 PRINTS PR00095 Anthranilate synthase component I signature 460 474 1.3E-24 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YP_2006 8ebb21760318a9c97ac35ecdd077c17c 521 PRINTS PR00095 Anthranilate synthase component I signature 351 364 1.3E-24 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YP_2006 8ebb21760318a9c97ac35ecdd077c17c 521 PRINTS PR00095 Anthranilate synthase component I signature 445 459 1.3E-24 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YP_2006 8ebb21760318a9c97ac35ecdd077c17c 521 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 18 516 1.4E-241 T 14-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YP_2006 8ebb21760318a9c97ac35ecdd077c17c 521 SUPERFAMILY SSF56322 9 516 2.75E-165 T 14-10-2018 IPR005801 ADC synthase GO:0009058 YP_2006 8ebb21760318a9c97ac35ecdd077c17c 521 Pfam PF00425 chorismate binding enzyme 243 503 6.3E-85 T 14-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal YP_1030 e105e31110324de7f23db9bd07a7766c 269 Pfam PF13174 Tetratricopeptide repeat 224 256 1.8E-7 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YP_1030 e105e31110324de7f23db9bd07a7766c 269 Gene3D G3DSA:1.25.40.10 149 269 1.6E-32 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_1030 e105e31110324de7f23db9bd07a7766c 269 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 149 266 3.7E-44 T 14-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal YP_1030 e105e31110324de7f23db9bd07a7766c 269 Pfam PF16331 TolA binding protein trimerisation 37 110 3.4E-23 T 14-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 YP_1030 e105e31110324de7f23db9bd07a7766c 269 Gene3D G3DSA:1.20.5.110 35 114 3.1E-32 T 14-10-2018 YP_1030 e105e31110324de7f23db9bd07a7766c 269 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 6 269 20.217 T 14-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 YP_1030 e105e31110324de7f23db9bd07a7766c 269 Pfam PF13432 Tetratricopeptide repeat 158 220 3.6E-10 T 14-10-2018 YP_1030 e105e31110324de7f23db9bd07a7766c 269 SUPERFAMILY SSF48452 158 262 7.59E-16 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_3147 cf067df5fecf3b92205c87340045d4b1 548 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 164 4.3E-58 T 14-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 YP_3147 cf067df5fecf3b92205c87340045d4b1 548 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 1 545 8.1E-214 T 14-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 YP_3147 cf067df5fecf3b92205c87340045d4b1 548 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 321 3.7E-41 T 14-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 YP_3147 cf067df5fecf3b92205c87340045d4b1 548 SUPERFAMILY SSF52467 184 342 4.48E-57 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily YP_3147 cf067df5fecf3b92205c87340045d4b1 548 Gene3D G3DSA:3.40.50.970 344 522 6.4E-119 T 14-10-2018 YP_3147 cf067df5fecf3b92205c87340045d4b1 548 Gene3D G3DSA:3.40.50.970 1 175 9.8E-70 T 14-10-2018 YP_3147 cf067df5fecf3b92205c87340045d4b1 548 SUPERFAMILY SSF52518 357 546 4.47E-64 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_3147 cf067df5fecf3b92205c87340045d4b1 548 Gene3D G3DSA:3.40.50.1220 187 343 6.4E-119 T 14-10-2018 YP_3147 cf067df5fecf3b92205c87340045d4b1 548 SUPERFAMILY SSF52518 1 174 2.31E-64 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_3147 cf067df5fecf3b92205c87340045d4b1 548 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 374 522 1.7E-48 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 YP_3147 cf067df5fecf3b92205c87340045d4b1 548 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 411 430 - T 14-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 PRINTS PR00394 RHS protein signature 1263 1283 3.9E-14 T 14-10-2018 IPR001826 RHS protein YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 PRINTS PR00394 RHS protein signature 1317 1337 3.9E-14 T 14-10-2018 IPR001826 RHS protein YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 PRINTS PR00394 RHS protein signature 1340 1359 3.9E-14 T 14-10-2018 IPR001826 RHS protein YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1297 1372 4.1E-25 T 14-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 Pfam PF03527 RHS protein 1269 1302 1.0E-10 T 14-10-2018 IPR001826 RHS protein YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 Gene3D G3DSA:2.180.10.10 1241 1372 1.4E-29 T 14-10-2018 YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 857 894 4.2E-8 T 14-10-2018 IPR006530 YD repeat YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 495 535 3.4E-8 T 14-10-2018 IPR006530 YD repeat YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 689 729 1.4E-10 T 14-10-2018 IPR006530 YD repeat YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 647 688 1.8E-10 T 14-10-2018 IPR006530 YD repeat YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 605 646 3.7E-11 T 14-10-2018 IPR006530 YD repeat YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 735 771 0.0014 T 14-10-2018 IPR006530 YD repeat YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 815 855 1.6E-10 T 14-10-2018 IPR006530 YD repeat YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 773 813 2.5E-9 T 14-10-2018 IPR006530 YD repeat YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1134 1170 6.5E-8 T 14-10-2018 IPR006530 YD repeat YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1064 1089 0.0022 T 14-10-2018 IPR006530 YD repeat YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 Pfam PF05593 RHS Repeat 689 725 1.3E-6 T 14-10-2018 IPR031325 RHS repeat YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 Pfam PF05593 RHS Repeat 837 872 7.5E-5 T 14-10-2018 IPR031325 RHS repeat YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 Pfam PF05593 RHS Repeat 1043 1079 9.9E-6 T 14-10-2018 IPR031325 RHS repeat YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 Gene3D G3DSA:3.90.930.1 874 1023 2.0E-8 T 14-10-2018 YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 Gene3D G3DSA:3.90.930.1 597 735 7.9E-11 T 14-10-2018 YP_3439 92ed4f1e39df7055bd9591bf0506d99f 1438 Gene3D G3DSA:3.90.930.1 736 873 3.7E-10 T 14-10-2018 YP_1197 f985fc74f2c0c6cea852a04715774e7e 328 SUPERFAMILY SSF52540 46 177 3.04E-13 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1197 f985fc74f2c0c6cea852a04715774e7e 328 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 13 317 1.2E-114 T 14-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 YP_1197 f985fc74f2c0c6cea852a04715774e7e 328 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 1 321 40.666 T 14-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 YP_1197 f985fc74f2c0c6cea852a04715774e7e 328 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 19 320 3.8E-106 T 14-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 YP_2191 239cdbab49c52d24fc70681f81a22448 132 SUPERFAMILY SSF89360 28 121 1.73E-27 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 YP_2191 239cdbab49c52d24fc70681f81a22448 132 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 113 130 - T 14-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 YP_2191 239cdbab49c52d24fc70681f81a22448 132 Gene3D G3DSA:2.60.300.12 27 132 1.4E-35 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 YP_2191 239cdbab49c52d24fc70681f81a22448 132 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 28 131 5.6E-34 T 14-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 YP_2191 239cdbab49c52d24fc70681f81a22448 132 Pfam PF01521 Iron-sulphur cluster biosynthesis 28 128 2.5E-19 T 14-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 YP_0360 60d8a6672b484ce59250baf4ae1d39fc 256 TIGRFAM TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase 26 256 5.5E-127 T 14-10-2018 IPR004661 L-ribulose-5-phosphate 4-epimerase GO:0008270|GO:0008742|GO:0019572 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 YP_0360 60d8a6672b484ce59250baf4ae1d39fc 256 SUPERFAMILY SSF53639 26 248 2.94E-68 T 14-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YP_0360 60d8a6672b484ce59250baf4ae1d39fc 256 Gene3D G3DSA:3.40.225.10 26 256 4.2E-61 T 14-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YP_0360 60d8a6672b484ce59250baf4ae1d39fc 256 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 33 221 7.8E-45 T 14-10-2018 IPR001303 Class II aldolase/adducin N-terminal YP_0360 60d8a6672b484ce59250baf4ae1d39fc 256 SMART SM01007 32 223 4.7E-65 T 14-10-2018 IPR001303 Class II aldolase/adducin N-terminal YP_0544 3f4b75464bdfc56f443a4f9c474a954f 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 14-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0544 3f4b75464bdfc56f443a4f9c474a954f 75 Gene3D G3DSA:4.10.640.10 20 75 1.9E-28 T 14-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0544 3f4b75464bdfc56f443a4f9c474a954f 75 Pfam PF01084 Ribosomal protein S18 19 68 4.8E-24 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0544 3f4b75464bdfc56f443a4f9c474a954f 75 SUPERFAMILY SSF46911 3 74 1.07E-28 T 14-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0544 3f4b75464bdfc56f443a4f9c474a954f 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 1.0E-22 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0544 3f4b75464bdfc56f443a4f9c474a954f 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 2.3E-36 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0544 3f4b75464bdfc56f443a4f9c474a954f 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 20.759 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0544 3f4b75464bdfc56f443a4f9c474a954f 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 1.3E-17 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0544 3f4b75464bdfc56f443a4f9c474a954f 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 1.3E-17 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0544 3f4b75464bdfc56f443a4f9c474a954f 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 1.3E-17 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0544 3f4b75464bdfc56f443a4f9c474a954f 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 1.3E-17 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_3966 fb10fa3906e6bd3069d50f1357db1c33 464 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 11 461 1.3E-185 T 14-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 YP_3966 fb10fa3906e6bd3069d50f1357db1c33 464 SUPERFAMILY SSF53383 74 349 1.1E-43 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_3966 fb10fa3906e6bd3069d50f1357db1c33 464 Gene3D G3DSA:3.90.1150.110 13 454 3.6E-154 T 14-10-2018 YP_3966 fb10fa3906e6bd3069d50f1357db1c33 464 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 464 246.164 T 14-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 YP_3966 fb10fa3906e6bd3069d50f1357db1c33 464 Pfam PF12390 Selenocysteine synthase N terminal 11 50 2.6E-9 T 14-10-2018 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 YP_3966 fb10fa3906e6bd3069d50f1357db1c33 464 Pfam PF03841 L-seryl-tRNA selenium transferase 84 452 1.8E-170 T 14-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 YP_3966 fb10fa3906e6bd3069d50f1357db1c33 464 Gene3D G3DSA:3.40.640.10 96 360 3.6E-154 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_3882 5dfa1518d064688f1a4c4a1fa69e6571 638 SUPERFAMILY SSF141868 399 631 1.83E-34 T 14-10-2018 IPR035919 EAL domain superfamily YP_3882 5dfa1518d064688f1a4c4a1fa69e6571 638 Pfam PF00990 Diguanylate cyclase, GGDEF domain 224 375 3.0E-22 T 14-10-2018 IPR000160 GGDEF domain YP_3882 5dfa1518d064688f1a4c4a1fa69e6571 638 Gene3D G3DSA:3.20.20.450 392 630 6.7E-33 T 14-10-2018 IPR035919 EAL domain superfamily YP_3882 5dfa1518d064688f1a4c4a1fa69e6571 638 SMART SM00052 392 632 2.9E-24 T 14-10-2018 IPR001633 EAL domain YP_3882 5dfa1518d064688f1a4c4a1fa69e6571 638 SUPERFAMILY SSF55073 230 383 3.92E-19 T 14-10-2018 IPR029787 Nucleotide cyclase YP_3882 5dfa1518d064688f1a4c4a1fa69e6571 638 Pfam PF00563 EAL domain 400 627 1.3E-37 T 14-10-2018 IPR001633 EAL domain YP_3882 5dfa1518d064688f1a4c4a1fa69e6571 638 Pfam PF17157 Gammaproteobacterial periplasmic sensor domain 33 130 9.7E-34 T 14-10-2018 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 YP_3882 5dfa1518d064688f1a4c4a1fa69e6571 638 SMART SM00267 213 382 5.6E-17 T 14-10-2018 IPR000160 GGDEF domain YP_3882 5dfa1518d064688f1a4c4a1fa69e6571 638 Gene3D G3DSA:3.30.70.270 207 383 9.9E-22 T 14-10-2018 YP_2477 62b0053046094cc4a15e79586c3cc54d 134 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 117 3.4E-19 T 14-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 YP_2477 62b0053046094cc4a15e79586c3cc54d 134 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 17.344 T 14-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 YP_1710 fea619f32eb39a6118233ac203cfb6eb 456 SUPERFAMILY SSF55909 13 455 1.67E-201 T 14-10-2018 YP_1710 fea619f32eb39a6118233ac203cfb6eb 456 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 10 455 59.674 T 14-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 YP_1710 fea619f32eb39a6118233ac203cfb6eb 456 Gene3D G3DSA:3.75.10.20 4 456 3.6E-207 T 14-10-2018 IPR037031 Succinylarginine dihydrolase superfamily GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 YP_1710 fea619f32eb39a6118233ac203cfb6eb 456 Pfam PF04996 Succinylarginine dihydrolase 13 454 1.5E-216 T 14-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 YP_1710 fea619f32eb39a6118233ac203cfb6eb 456 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 12 454 1.3E-252 T 14-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 YP_1474 53d0676c93c743ffef02e18ba0dedf10 283 Gene3D G3DSA:1.10.510.10 135 229 1.2E-18 T 14-10-2018 YP_1474 53d0676c93c743ffef02e18ba0dedf10 283 Gene3D G3DSA:3.30.200.20 16 126 7.5E-5 T 14-10-2018 YP_1474 53d0676c93c743ffef02e18ba0dedf10 283 Pfam PF01163 RIO1 family 31 219 9.7E-44 T 14-10-2018 YP_1474 53d0676c93c743ffef02e18ba0dedf10 283 SUPERFAMILY SSF56112 18 226 4.87E-21 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily YP_1474 53d0676c93c743ffef02e18ba0dedf10 283 ProSitePatterns PS01245 RIO1/ZK632.3/MJ0444 family signature. 164 175 - T 14-10-2018 IPR018935 RIO kinase, conserved site GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 YP_1474 53d0676c93c743ffef02e18ba0dedf10 283 SMART SM00090 5 228 2.5E-15 T 14-10-2018 IPR000687 RIO kinase GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 YP_2391 3320ea20ca90194501ab34bbd67da485 195 Pfam PF02441 Flavoprotein 7 170 6.4E-25 T 14-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 YP_2391 3320ea20ca90194501ab34bbd67da485 195 SUPERFAMILY SSF52507 7 192 5.23E-59 T 14-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 YP_2391 3320ea20ca90194501ab34bbd67da485 195 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 7 193 36.467 T 14-10-2018 IPR004507 Flavin prenyltransferase UbiX-like YP_2391 3320ea20ca90194501ab34bbd67da485 195 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 8 191 1.4E-71 T 14-10-2018 IPR004507 Flavin prenyltransferase UbiX-like YP_2391 3320ea20ca90194501ab34bbd67da485 195 Gene3D G3DSA:3.40.50.1950 7 195 1.2E-77 T 14-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 YP_1847 3c6f8b12f509750cae2c1e8ae64900d1 463 SUPERFAMILY SSF158472 188 232 6.02E-5 T 14-10-2018 YP_1847 3c6f8b12f509750cae2c1e8ae64900d1 463 Pfam PF00512 His Kinase A (phospho-acceptor) domain 241 306 2.0E-15 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_1847 3c6f8b12f509750cae2c1e8ae64900d1 463 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 350 451 8.8E-14 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_1847 3c6f8b12f509750cae2c1e8ae64900d1 463 Pfam PF00672 HAMP domain 187 233 3.6E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_1847 3c6f8b12f509750cae2c1e8ae64900d1 463 SMART SM00388 240 306 1.4E-16 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_1847 3c6f8b12f509750cae2c1e8ae64900d1 463 Gene3D G3DSA:3.30.565.10 312 461 8.6E-27 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_1847 3c6f8b12f509750cae2c1e8ae64900d1 463 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 6 456 9.8E-121 T 14-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 YP_1847 3c6f8b12f509750cae2c1e8ae64900d1 463 SMART SM00387 349 460 5.8E-21 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_1847 3c6f8b12f509750cae2c1e8ae64900d1 463 SUPERFAMILY SSF47384 223 307 4.71E-17 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_1847 3c6f8b12f509750cae2c1e8ae64900d1 463 SMART SM00304 186 239 1.5E-4 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_1847 3c6f8b12f509750cae2c1e8ae64900d1 463 SUPERFAMILY SSF55874 295 451 1.11E-29 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_1847 3c6f8b12f509750cae2c1e8ae64900d1 463 Gene3D G3DSA:1.10.287.130 190 306 3.7E-23 T 14-10-2018 YP_3403 6660d66e4098392f995e03850f0bf132 275 SUPERFAMILY SSF49354 56 173 4.19E-38 T 14-10-2018 IPR008962 PapD-like superfamily YP_3403 6660d66e4098392f995e03850f0bf132 275 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 56 173 7.5E-39 T 14-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YP_3403 6660d66e4098392f995e03850f0bf132 275 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 196 255 2.5E-14 T 14-10-2018 IPR016148 Pili assembly chaperone, C-terminal YP_3403 6660d66e4098392f995e03850f0bf132 275 PRINTS PR00969 Pili chaperone signature 102 123 3.8E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3403 6660d66e4098392f995e03850f0bf132 275 PRINTS PR00969 Pili chaperone signature 191 206 3.8E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3403 6660d66e4098392f995e03850f0bf132 275 PRINTS PR00969 Pili chaperone signature 155 170 3.8E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3403 6660d66e4098392f995e03850f0bf132 275 PRINTS PR00969 Pili chaperone signature 132 149 3.8E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3403 6660d66e4098392f995e03850f0bf132 275 PRINTS PR00969 Pili chaperone signature 56 65 3.8E-33 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3403 6660d66e4098392f995e03850f0bf132 275 Gene3D G3DSA:2.60.40.10 55 174 7.7E-41 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3403 6660d66e4098392f995e03850f0bf132 275 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 131 148 - T 14-10-2018 IPR018046 Pili assembly chaperone, conserved site YP_3403 6660d66e4098392f995e03850f0bf132 275 SUPERFAMILY SSF49584 180 267 5.1E-20 T 14-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_3403 6660d66e4098392f995e03850f0bf132 275 Gene3D G3DSA:2.60.40.10 176 267 2.3E-19 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3728 66ceb75f8fd65fc058d46a72ec56d96a 215 SUPERFAMILY SSF53254 1 209 4.06E-58 T 14-10-2018 IPR029033 Histidine phosphatase superfamily YP_3728 66ceb75f8fd65fc058d46a72ec56d96a 215 SMART SM00855 3 157 2.4E-23 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 YP_3728 66ceb75f8fd65fc058d46a72ec56d96a 215 PIRSF PIRSF000709 2 175 3.9E-11 T 14-10-2018 YP_3728 66ceb75f8fd65fc058d46a72ec56d96a 215 Gene3D G3DSA:3.40.50.1240 1 212 3.3E-58 T 14-10-2018 IPR029033 Histidine phosphatase superfamily YP_3728 66ceb75f8fd65fc058d46a72ec56d96a 215 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 194 9.3E-59 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 YP_3728 66ceb75f8fd65fc058d46a72ec56d96a 215 Hamap MF_01040 Probable phosphoglycerate mutase GpmB [gpmB]. 1 215 51.058 T 14-10-2018 IPR023086 Phosphoglycerate mutase, GpmB, probable GO:0004619|GO:0006096 YP_3728 66ceb75f8fd65fc058d46a72ec56d96a 215 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 14-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 YP_0232 80c7012d85026492b38fec236787e651 329 SMART SM00662 23 234 8.0E-106 T 14-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_0232 80c7012d85026492b38fec236787e651 329 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 308 7.5E-24 T 14-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_0232 80c7012d85026492b38fec236787e651 329 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 316 3.9E-113 T 14-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_0232 80c7012d85026492b38fec236787e651 329 SUPERFAMILY SSF55257 6 231 1.57E-30 T 14-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_0232 80c7012d85026492b38fec236787e651 329 SUPERFAMILY SSF47789 251 325 1.27E-25 T 14-10-2018 YP_0232 80c7012d85026492b38fec236787e651 329 Gene3D G3DSA:3.30.1360.10 17 228 2.8E-86 T 14-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_0232 80c7012d85026492b38fec236787e651 329 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 256 329 2.0E-36 T 14-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_0232 80c7012d85026492b38fec236787e651 329 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 156 1.3E-23 T 14-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_0232 80c7012d85026492b38fec236787e651 329 Gene3D G3DSA:2.170.120.12 53 177 2.8E-86 T 14-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_0232 80c7012d85026492b38fec236787e651 329 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 228 3.9E-24 T 14-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_0232 80c7012d85026492b38fec236787e651 329 Gene3D G3DSA:1.10.150.20 244 329 9.7E-39 T 14-10-2018 YP_0232 80c7012d85026492b38fec236787e651 329 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 317 34.661 T 14-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_0232 80c7012d85026492b38fec236787e651 329 SUPERFAMILY SSF56553 53 178 1.17E-41 T 14-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YP_3206 012c6648d242d461d2d9135507a4947f 722 Gene3D G3DSA:1.10.486.10 384 540 1.9E-137 T 14-10-2018 YP_3206 012c6648d242d461d2d9135507a4947f 722 Gene3D G3DSA:1.10.10.160 116 189 5.1E-105 T 14-10-2018 IPR013986 DExx box DNA helicase domain superfamily YP_3206 012c6648d242d461d2d9135507a4947f 722 Gene3D G3DSA:3.40.50.300 283 638 1.9E-137 T 14-10-2018 YP_3206 012c6648d242d461d2d9135507a4947f 722 Gene3D G3DSA:3.40.50.300 12 276 5.1E-105 T 14-10-2018 YP_3206 012c6648d242d461d2d9135507a4947f 722 TIGRFAM TIGR01075 uvrD: DNA helicase II 8 720 0.0 T 14-10-2018 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 YP_3206 012c6648d242d461d2d9135507a4947f 722 SUPERFAMILY SSF52540 5 644 2.08E-181 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3206 012c6648d242d461d2d9135507a4947f 722 Pfam PF13361 UvrD-like helicase C-terminal domain 279 618 1.4E-73 T 14-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 YP_3206 012c6648d242d461d2d9135507a4947f 722 Pfam PF00580 UvrD/REP helicase N-terminal domain 12 273 2.1E-75 T 14-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 YP_2198 3f3a61ff3f715a199264822f7b2e7120 348 Pfam PF00793 DAHP synthetase I family 41 337 2.2E-101 T 14-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 YP_2198 3f3a61ff3f715a199264822f7b2e7120 348 SUPERFAMILY SSF51569 7 347 3.57E-131 T 14-10-2018 YP_2198 3f3a61ff3f715a199264822f7b2e7120 348 PIRSF PIRSF001361 1 348 4.2E-155 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 YP_2198 3f3a61ff3f715a199264822f7b2e7120 348 Gene3D G3DSA:3.20.20.70 1 348 5.4E-153 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_2198 3f3a61ff3f715a199264822f7b2e7120 348 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 5 348 2.1E-168 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 YP_2927 571f236d36fb6ca2a7cccda37e74c2fd 372 Pfam PF08402 TOBE domain 290 361 3.1E-9 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YP_2927 571f236d36fb6ca2a7cccda37e74c2fd 372 SUPERFAMILY SSF52540 6 249 6.6E-78 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2927 571f236d36fb6ca2a7cccda37e74c2fd 372 SMART SM00382 30 218 8.5E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2927 571f236d36fb6ca2a7cccda37e74c2fd 372 Pfam PF00005 ABC transporter 21 163 4.7E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2927 571f236d36fb6ca2a7cccda37e74c2fd 372 Gene3D G3DSA:2.40.50.940 229 362 2.1E-30 T 14-10-2018 YP_2927 571f236d36fb6ca2a7cccda37e74c2fd 372 Gene3D G3DSA:2.40.50.140 296 353 2.1E-30 T 14-10-2018 YP_2927 571f236d36fb6ca2a7cccda37e74c2fd 372 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2927 571f236d36fb6ca2a7cccda37e74c2fd 372 Gene3D G3DSA:3.40.50.300 5 228 1.9E-59 T 14-10-2018 YP_2927 571f236d36fb6ca2a7cccda37e74c2fd 372 SUPERFAMILY SSF50331 243 369 4.86E-26 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YP_3682 808a6acd1a87a26b5436001cb1d24e59 206 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 47 61 - T 14-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_3682 808a6acd1a87a26b5436001cb1d24e59 206 Pfam PF00849 RNA pseudouridylate synthase 9 156 1.6E-28 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_3682 808a6acd1a87a26b5436001cb1d24e59 206 Gene3D G3DSA:3.30.2350.10 1 206 6.1E-72 T 14-10-2018 YP_3682 808a6acd1a87a26b5436001cb1d24e59 206 SUPERFAMILY SSF55120 3 203 6.08E-62 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_0234 dbdf06e7b5d84d57e9f872beeaec5528 144 SUPERFAMILY SSF46955 5 124 5.13E-35 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily YP_0234 dbdf06e7b5d84d57e9f872beeaec5528 144 ProSitePatterns PS00552 MerR-type HTH domain signature. 8 30 - T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YP_0234 dbdf06e7b5d84d57e9f872beeaec5528 144 Pfam PF13411 MerR HTH family regulatory protein 6 72 3.6E-21 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YP_0234 dbdf06e7b5d84d57e9f872beeaec5528 144 TIGRFAM TIGR02043 ZntR: Zn(II)-responsive transcriptional regulator 4 134 2.9E-72 T 14-10-2018 IPR011788 Zn(II)-responsive transcriptional regulator GO:0003677|GO:0006351|GO:0008270 YP_0234 dbdf06e7b5d84d57e9f872beeaec5528 144 Gene3D G3DSA:1.10.1660.10 1 132 5.2E-38 T 14-10-2018 YP_0234 dbdf06e7b5d84d57e9f872beeaec5528 144 SMART SM00422 5 74 1.9E-31 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YP_0234 dbdf06e7b5d84d57e9f872beeaec5528 144 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 17 30 3.5E-13 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YP_0234 dbdf06e7b5d84d57e9f872beeaec5528 144 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 6 17 3.5E-13 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YP_0234 dbdf06e7b5d84d57e9f872beeaec5528 144 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 41 61 3.5E-13 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YP_1054 56692f475e2f1546d88d2fda30df3a43 178 Gene3D G3DSA:3.30.530.20 36 178 3.0E-39 T 14-10-2018 IPR023393 START-like domain superfamily YP_1054 56692f475e2f1546d88d2fda30df3a43 178 SUPERFAMILY SSF55961 35 177 6.98E-35 T 14-10-2018 YP_1054 56692f475e2f1546d88d2fda30df3a43 178 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 44 169 4.6E-33 T 14-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 YP_0738 41e2ac9e359b60fca92104b7a3bcc33d 202 Pfam PF04336 Acyl carrier protein phosphodiesterase 90 194 4.1E-31 T 14-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 YP_0738 41e2ac9e359b60fca92104b7a3bcc33d 202 Hamap MF_01950 Acyl carrier protein phosphodiesterase [acpH]. 10 202 58.179 T 14-10-2018 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 YP_0738 41e2ac9e359b60fca92104b7a3bcc33d 202 PIRSF PIRSF011489 10 202 3.7E-78 T 14-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 YP_2942 1970bea133a42aeb846621b5f0b7848c 148 SUPERFAMILY SSF55961 5 144 3.96E-24 T 14-10-2018 YP_2942 1970bea133a42aeb846621b5f0b7848c 148 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 5 118 1.8E-13 T 14-10-2018 IPR019587 Polyketide cyclase/dehydrase YP_2942 1970bea133a42aeb846621b5f0b7848c 148 Gene3D G3DSA:3.30.530.20 7 147 1.3E-31 T 14-10-2018 IPR023393 START-like domain superfamily YP_2125 5cdaa6353253144fa55cb5ca2ffb0724 337 Gene3D G3DSA:1.20.58.340 280 337 1.4E-11 T 14-10-2018 YP_2125 5cdaa6353253144fa55cb5ca2ffb0724 337 Pfam PF01544 CorA-like Mg2+ transporter protein 49 333 1.5E-63 T 14-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 YP_2125 5cdaa6353253144fa55cb5ca2ffb0724 337 Gene3D G3DSA:1.20.58.340 150 272 2.1E-41 T 14-10-2018 YP_2125 5cdaa6353253144fa55cb5ca2ffb0724 337 SUPERFAMILY SSF143865 21 269 2.22E-52 T 14-10-2018 YP_2125 5cdaa6353253144fa55cb5ca2ffb0724 337 SUPERFAMILY SSF144083 273 334 2.75E-13 T 14-10-2018 YP_2125 5cdaa6353253144fa55cb5ca2ffb0724 337 Gene3D G3DSA:3.30.460.20 9 149 2.5E-43 T 14-10-2018 YP_3731 eac092adc7b1f730a2e5013a06d9fc82 649 SUPERFAMILY SSF53955 483 645 2.03E-50 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_3731 eac092adc7b1f730a2e5013a06d9fc82 649 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 505 533 - T 14-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 YP_3731 eac092adc7b1f730a2e5013a06d9fc82 649 Gene3D G3DSA:1.10.530.10 477 649 7.3E-53 T 14-10-2018 YP_3731 eac092adc7b1f730a2e5013a06d9fc82 649 Pfam PF01464 Transglycosylase SLT domain 490 600 1.2E-33 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 YP_3731 eac092adc7b1f730a2e5013a06d9fc82 649 SUPERFAMILY SSF48435 33 481 1.44E-139 T 14-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 YP_3731 eac092adc7b1f730a2e5013a06d9fc82 649 Gene3D G3DSA:1.25.20.10 33 393 2.8E-120 T 14-10-2018 YP_3731 eac092adc7b1f730a2e5013a06d9fc82 649 Gene3D G3DSA:1.10.1240.20 407 476 2.1E-28 T 14-10-2018 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily GO:0004553|GO:0042597 YP_3731 eac092adc7b1f730a2e5013a06d9fc82 649 Pfam PF14718 Soluble lytic murein transglycosylase L domain 410 476 1.4E-25 T 14-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 YP_3532 ee9d56fd5dd9420fbc91abd59445dc26 296 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 36 295 3.1E-80 T 14-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 YP_3322 0e7effc6ca06b031c06b8561abe2d295 335 SUPERFAMILY SSF53613 6 328 4.99E-52 T 14-10-2018 IPR029056 Ribokinase-like YP_3322 0e7effc6ca06b031c06b8561abe2d295 335 Pfam PF00294 pfkB family carbohydrate kinase 29 319 9.0E-34 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB YP_3322 0e7effc6ca06b031c06b8561abe2d295 335 Gene3D G3DSA:3.40.1190.20 2 334 8.9E-53 T 14-10-2018 IPR029056 Ribokinase-like YP_3889 090875b31b9f68ca704d3d79328ba8dc 80 ProDom PD745092 MEMBRANE YHDT SODIUM/PANTOTHENATE TRANSMEMBRANE INNER SYMPORTER Y0210 INTEGRAL PROTEIN-LIKE PM1090 1 79 2.0E-39 T 14-10-2018 IPR010398 Protein of unknown function DUF997 YP_3889 090875b31b9f68ca704d3d79328ba8dc 80 Pfam PF06196 Protein of unknown function (DUF997) 7 77 5.8E-30 T 14-10-2018 IPR010398 Protein of unknown function DUF997 YP_2562 90f17fa00f448eff8db1b5044a88a88b 166 Pfam PF07743 HSCB C-terminal oligomerisation domain 80 155 4.5E-16 T 14-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YP_2562 90f17fa00f448eff8db1b5044a88a88b 166 Gene3D G3DSA:1.20.1280.20 72 163 1.7E-24 T 14-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YP_2562 90f17fa00f448eff8db1b5044a88a88b 166 SUPERFAMILY SSF47144 70 163 9.81E-25 T 14-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YP_2562 90f17fa00f448eff8db1b5044a88a88b 166 SUPERFAMILY SSF46565 5 66 1.19E-14 T 14-10-2018 IPR036869 Chaperone J-domain superfamily YP_2562 90f17fa00f448eff8db1b5044a88a88b 166 Gene3D G3DSA:1.10.287.110 1 71 5.6E-20 T 14-10-2018 IPR036869 Chaperone J-domain superfamily YP_2562 90f17fa00f448eff8db1b5044a88a88b 166 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 5 161 3.5E-52 T 14-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YP_2562 90f17fa00f448eff8db1b5044a88a88b 166 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 162 21.527 T 14-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YP_3812 69b0dc5bece62592cd93dc3d9d2d2ea5 472 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 6 472 1.0E-261 T 14-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 YP_3812 69b0dc5bece62592cd93dc3d9d2d2ea5 472 SUPERFAMILY SSF46548 7 157 1.1E-41 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YP_3812 69b0dc5bece62592cd93dc3d9d2d2ea5 472 Gene3D G3DSA:3.50.50.60 248 400 1.0E-43 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3812 69b0dc5bece62592cd93dc3d9d2d2ea5 472 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 147 459 4.1E-25 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YP_3812 69b0dc5bece62592cd93dc3d9d2d2ea5 472 SUPERFAMILY SSF51971 145 401 1.06E-68 T 14-10-2018 YP_3812 69b0dc5bece62592cd93dc3d9d2d2ea5 472 PRINTS PR00419 Adrenodoxin reductase family signature 324 337 1.5E-37 T 14-10-2018 YP_3812 69b0dc5bece62592cd93dc3d9d2d2ea5 472 PRINTS PR00419 Adrenodoxin reductase family signature 213 223 1.5E-37 T 14-10-2018 YP_3812 69b0dc5bece62592cd93dc3d9d2d2ea5 472 PRINTS PR00419 Adrenodoxin reductase family signature 148 170 1.5E-37 T 14-10-2018 YP_3812 69b0dc5bece62592cd93dc3d9d2d2ea5 472 PRINTS PR00419 Adrenodoxin reductase family signature 171 184 1.5E-37 T 14-10-2018 YP_3812 69b0dc5bece62592cd93dc3d9d2d2ea5 472 PRINTS PR00419 Adrenodoxin reductase family signature 290 304 1.5E-37 T 14-10-2018 YP_3812 69b0dc5bece62592cd93dc3d9d2d2ea5 472 Gene3D G3DSA:3.50.50.60 147 205 2.1E-10 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3812 69b0dc5bece62592cd93dc3d9d2d2ea5 472 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 134 5.3E-38 T 14-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 YP_3812 69b0dc5bece62592cd93dc3d9d2d2ea5 472 Gene3D G3DSA:1.10.1060.10 13 146 6.8E-35 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YP_0785 24ca6b4e34def4dc71620dabe055675a 153 SMART SM00344 2 111 4.8E-38 T 14-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 YP_0785 24ca6b4e34def4dc71620dabe055675a 153 Gene3D G3DSA:1.10.10.10 3 54 5.2E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0785 24ca6b4e34def4dc71620dabe055675a 153 SUPERFAMILY SSF46785 1 61 1.63E-15 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0785 24ca6b4e34def4dc71620dabe055675a 153 Gene3D G3DSA:3.30.70.920 55 139 1.3E-24 T 14-10-2018 YP_0785 24ca6b4e34def4dc71620dabe055675a 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 49 6.1E-16 T 14-10-2018 YP_0785 24ca6b4e34def4dc71620dabe055675a 153 Pfam PF01037 Lrp/AsnC ligand binding domain 68 141 1.0E-21 T 14-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YP_0785 24ca6b4e34def4dc71620dabe055675a 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 8.3E-10 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YP_0785 24ca6b4e34def4dc71620dabe055675a 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 8.3E-10 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YP_0785 24ca6b4e34def4dc71620dabe055675a 153 SUPERFAMILY SSF54909 62 151 1.27E-21 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel YP_1664 c691ed63132617db2a1b2ad897ed3cb2 214 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 144 207 1.3E-12 T 14-10-2018 IPR016148 Pili assembly chaperone, C-terminal YP_1664 c691ed63132617db2a1b2ad897ed3cb2 214 Gene3D G3DSA:2.60.40.10 27 148 2.2E-33 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_1664 c691ed63132617db2a1b2ad897ed3cb2 214 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 27 144 7.0E-32 T 14-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YP_1664 c691ed63132617db2a1b2ad897ed3cb2 214 SUPERFAMILY SSF49584 137 211 3.14E-13 T 14-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_1664 c691ed63132617db2a1b2ad897ed3cb2 214 SUPERFAMILY SSF49354 21 133 4.45E-32 T 14-10-2018 IPR008962 PapD-like superfamily YP_1664 c691ed63132617db2a1b2ad897ed3cb2 214 PRINTS PR00969 Pili chaperone signature 104 121 2.7E-14 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1664 c691ed63132617db2a1b2ad897ed3cb2 214 PRINTS PR00969 Pili chaperone signature 76 97 2.7E-14 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1664 c691ed63132617db2a1b2ad897ed3cb2 214 PRINTS PR00969 Pili chaperone signature 27 36 2.7E-14 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_1092 749882214483930664ba991f98bfc0e5 393 SUPERFAMILY SSF51905 7 384 5.28E-62 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_1092 749882214483930664ba991f98bfc0e5 393 Gene3D G3DSA:3.30.9.50 84 271 3.8E-104 T 14-10-2018 YP_1092 749882214483930664ba991f98bfc0e5 393 Pfam PF01494 FAD binding domain 8 341 4.1E-26 T 14-10-2018 IPR002938 FAD-binding domain GO:0071949 YP_1092 749882214483930664ba991f98bfc0e5 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 313 5.4E-18 T 14-10-2018 YP_1092 749882214483930664ba991f98bfc0e5 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 297 5.4E-18 T 14-10-2018 YP_1092 749882214483930664ba991f98bfc0e5 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 5.4E-18 T 14-10-2018 YP_1092 749882214483930664ba991f98bfc0e5 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 159 174 5.4E-18 T 14-10-2018 YP_1092 749882214483930664ba991f98bfc0e5 393 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 9 392 9.1E-125 T 14-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 YP_1092 749882214483930664ba991f98bfc0e5 393 Gene3D G3DSA:3.50.50.60 9 340 3.8E-104 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0252 f2ed23e8ed18bc2d47cc3826de5af644 68 Pfam PF03884 DNA gyrase inhibitor YacG 8 58 1.2E-24 T 14-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 YP_0252 f2ed23e8ed18bc2d47cc3826de5af644 68 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 4 60 18.968 T 14-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 YP_0252 f2ed23e8ed18bc2d47cc3826de5af644 68 Gene3D G3DSA:3.30.50.10 2 65 6.0E-26 T 14-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 YP_0252 f2ed23e8ed18bc2d47cc3826de5af644 68 SUPERFAMILY SSF57716 5 63 1.71E-21 T 14-10-2018 YP_0464 bade5a997e7d70a85a280f08fbec097f 685 SUPERFAMILY SSF51055 634 678 4.71E-8 T 14-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 YP_0464 bade5a997e7d70a85a280f08fbec097f 685 Gene3D G3DSA:3.30.465.40 10 525 6.5E-120 T 14-10-2018 YP_0464 bade5a997e7d70a85a280f08fbec097f 685 Gene3D G3DSA:3.40.462.20 226 508 6.5E-120 T 14-10-2018 YP_0464 bade5a997e7d70a85a280f08fbec097f 685 Pfam PF01565 FAD binding domain 33 181 1.1E-11 T 14-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 YP_0464 bade5a997e7d70a85a280f08fbec097f 685 SUPERFAMILY SSF56176 5 221 5.14E-22 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YP_0464 bade5a997e7d70a85a280f08fbec097f 685 SUPERFAMILY SSF49265 536 637 1.23E-16 T 14-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 YP_0464 bade5a997e7d70a85a280f08fbec097f 685 Gene3D G3DSA:2.60.40.10 541 628 4.3E-16 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_0464 bade5a997e7d70a85a280f08fbec097f 685 Pfam PF08031 Berberine and berberine like 480 536 5.5E-12 T 14-10-2018 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 YP_0464 bade5a997e7d70a85a280f08fbec097f 685 Gene3D G3DSA:2.10.10.20 632 680 1.8E-7 T 14-10-2018 YP_0464 bade5a997e7d70a85a280f08fbec097f 685 SMART SM00060 542 617 3.3E-4 T 14-10-2018 IPR003961 Fibronectin type III GO:0005515 YP_0207 c59cc932dc0db3057b44a97bb65e01eb 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 204 1.4E-92 T 14-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0207 c59cc932dc0db3057b44a97bb65e01eb 209 SUPERFAMILY SSF50447 1 208 2.38E-80 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YP_0207 c59cc932dc0db3057b44a97bb65e01eb 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 207 41.005 T 14-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0207 c59cc932dc0db3057b44a97bb65e01eb 209 Gene3D G3DSA:2.40.30.10 128 209 5.5E-19 T 14-10-2018 YP_0207 c59cc932dc0db3057b44a97bb65e01eb 209 Pfam PF00297 Ribosomal protein L3 94 182 1.2E-12 T 14-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0207 c59cc932dc0db3057b44a97bb65e01eb 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 101 124 - T 14-10-2018 IPR019926 Ribosomal protein L3, conserved site YP_0207 c59cc932dc0db3057b44a97bb65e01eb 209 Gene3D G3DSA:2.40.50.620 32 94 6.1E-15 T 14-10-2018 YP_0295 c10d0addd4de96080e1056cf35dfecef 665 Gene3D G3DSA:1.10.3470.10 10 335 4.7E-70 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_0295 c10d0addd4de96080e1056cf35dfecef 665 Pfam PF01032 FecCD transport family 366 662 6.8E-72 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YP_0295 c10d0addd4de96080e1056cf35dfecef 665 Pfam PF01032 FecCD transport family 19 328 1.1E-66 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YP_0295 c10d0addd4de96080e1056cf35dfecef 665 Gene3D G3DSA:1.10.3470.10 345 665 1.0E-76 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_0295 c10d0addd4de96080e1056cf35dfecef 665 SUPERFAMILY SSF81345 10 330 1.22E-59 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_0295 c10d0addd4de96080e1056cf35dfecef 665 SUPERFAMILY SSF81345 349 662 1.7E-69 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_2338 cdd11a7513535a5e1fd49ce26e8e4806 567 Gene3D G3DSA:3.40.50.1220 217 342 1.2E-46 T 14-10-2018 YP_2338 cdd11a7513535a5e1fd49ce26e8e4806 567 Gene3D G3DSA:3.40.50.970 1 196 2.1E-62 T 14-10-2018 YP_2338 cdd11a7513535a5e1fd49ce26e8e4806 567 SUPERFAMILY SSF52518 372 559 8.3E-34 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_2338 cdd11a7513535a5e1fd49ce26e8e4806 567 Pfam PF16582 Middle domain of thiamine pyrophosphate 184 394 1.6E-87 T 14-10-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 YP_2338 cdd11a7513535a5e1fd49ce26e8e4806 567 PIRSF PIRSF004983 1 564 2.3E-178 T 14-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 YP_2338 cdd11a7513535a5e1fd49ce26e8e4806 567 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 425 541 8.5E-8 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 YP_2338 cdd11a7513535a5e1fd49ce26e8e4806 567 SUPERFAMILY SSF52518 7 176 5.35E-31 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_2338 cdd11a7513535a5e1fd49ce26e8e4806 567 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 4 559 32.611 T 14-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 YP_2338 cdd11a7513535a5e1fd49ce26e8e4806 567 Gene3D G3DSA:3.40.50.970 357 562 2.1E-61 T 14-10-2018 YP_2338 cdd11a7513535a5e1fd49ce26e8e4806 567 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 169 2.2E-27 T 14-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 YP_2338 cdd11a7513535a5e1fd49ce26e8e4806 567 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 10 436 1.5E-142 T 14-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 YP_0147 6421b05056ab692669e7901b7988d91e 313 Pfam PF11104 Type IV pilus assembly protein PilM; 24 182 1.0E-17 T 14-10-2018 IPR005883 Type IV pilus assembly protein PilM YP_0147 6421b05056ab692669e7901b7988d91e 313 SUPERFAMILY SSF53067 78 180 3.3E-6 T 14-10-2018 YP_0147 6421b05056ab692669e7901b7988d91e 313 Gene3D G3DSA:3.30.420.40 23 183 3.5E-12 T 14-10-2018 YP_0147 6421b05056ab692669e7901b7988d91e 313 Gene3D G3DSA:3.30.1490.300 97 152 3.5E-12 T 14-10-2018 YP_1745 9586d16f2670f5f0167c685012297ac2 375 Pfam PF00005 ABC transporter 21 162 3.5E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1745 9586d16f2670f5f0167c685012297ac2 375 SMART SM00382 29 217 2.1E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1745 9586d16f2670f5f0167c685012297ac2 375 SUPERFAMILY SSF52540 6 247 1.25E-78 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1745 9586d16f2670f5f0167c685012297ac2 375 Gene3D G3DSA:2.40.50.140 295 357 7.5E-24 T 14-10-2018 YP_1745 9586d16f2670f5f0167c685012297ac2 375 Gene3D G3DSA:2.40.50.940 228 366 7.5E-24 T 14-10-2018 YP_1745 9586d16f2670f5f0167c685012297ac2 375 Gene3D G3DSA:3.40.50.300 4 227 3.0E-60 T 14-10-2018 YP_1745 9586d16f2670f5f0167c685012297ac2 375 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1745 9586d16f2670f5f0167c685012297ac2 375 SUPERFAMILY SSF50331 243 373 8.02E-21 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YP_pCD60 761cb837c8e8ce0086e82520390a8177 367 Gene3D G3DSA:3.80.10.10 34 205 1.5E-49 T 14-10-2018 IPR032675 Leucine-rich repeat domain superfamily YP_pCD60 761cb837c8e8ce0086e82520390a8177 367 Pfam PF12468 Type III secretion system leucine rich repeat protein 8 63 4.5E-17 T 14-10-2018 IPR032674 LRR-containing bacterial E3 ligase, N-terminal MetaCyc: PWY-7511 YP_pCD60 761cb837c8e8ce0086e82520390a8177 367 Gene3D G3DSA:3.80.10.10 211 353 4.9E-32 T 14-10-2018 IPR032675 Leucine-rich repeat domain superfamily YP_pCD60 761cb837c8e8ce0086e82520390a8177 367 SMART SM00364 194 213 0.023 T 14-10-2018 YP_pCD60 761cb837c8e8ce0086e82520390a8177 367 SMART SM00364 294 313 0.0022 T 14-10-2018 YP_pCD60 761cb837c8e8ce0086e82520390a8177 367 SMART SM00364 90 109 2.0E-5 T 14-10-2018 YP_pCD60 761cb837c8e8ce0086e82520390a8177 367 SMART SM00364 254 273 0.0017 T 14-10-2018 YP_pCD60 761cb837c8e8ce0086e82520390a8177 367 SMART SM00364 214 233 2.3E-5 T 14-10-2018 YP_pCD60 761cb837c8e8ce0086e82520390a8177 367 SMART SM00364 274 293 1.8E-5 T 14-10-2018 YP_pCD60 761cb837c8e8ce0086e82520390a8177 367 SMART SM00364 234 253 0.023 T 14-10-2018 YP_pCD60 761cb837c8e8ce0086e82520390a8177 367 SMART SM00364 110 129 0.0025 T 14-10-2018 YP_pCD60 761cb837c8e8ce0086e82520390a8177 367 SMART SM00364 314 333 0.0018 T 14-10-2018 YP_pCD60 761cb837c8e8ce0086e82520390a8177 367 SMART SM00364 152 171 0.011 T 14-10-2018 YP_pCD60 761cb837c8e8ce0086e82520390a8177 367 SMART SM00364 172 191 6.2E-5 T 14-10-2018 YP_pCD60 761cb837c8e8ce0086e82520390a8177 367 SMART SM00364 130 149 2.1E-5 T 14-10-2018 YP_pCD60 761cb837c8e8ce0086e82520390a8177 367 SUPERFAMILY SSF52058 71 335 5.78E-53 T 14-10-2018 YP_3520 1890b72a315aa42297ab43aec0f2dcee 359 Pfam PF01116 Fructose-bisphosphate aldolase class-II 17 355 4.3E-89 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YP_3520 1890b72a315aa42297ab43aec0f2dcee 359 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 14 357 8.8E-115 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YP_3520 1890b72a315aa42297ab43aec0f2dcee 359 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 101 112 - T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YP_3520 1890b72a315aa42297ab43aec0f2dcee 359 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 4 358 4.0E-190 T 14-10-2018 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 YP_3520 1890b72a315aa42297ab43aec0f2dcee 359 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 172 183 - T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YP_3520 1890b72a315aa42297ab43aec0f2dcee 359 SUPERFAMILY SSF51569 4 357 4.98E-132 T 14-10-2018 YP_3520 1890b72a315aa42297ab43aec0f2dcee 359 Gene3D G3DSA:3.20.20.70 2 359 6.1E-154 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3520 1890b72a315aa42297ab43aec0f2dcee 359 PIRSF PIRSF001359 13 359 6.0E-103 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YP_3381 b188aff74931ffd6e4c6371504aab202 335 Gene3D G3DSA:3.40.50.1100 60 161 7.8E-73 T 14-10-2018 YP_3381 b188aff74931ffd6e4c6371504aab202 335 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 26 312 1.1E-58 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YP_3381 b188aff74931ffd6e4c6371504aab202 335 SUPERFAMILY SSF53686 14 323 1.57E-66 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_3381 b188aff74931ffd6e4c6371504aab202 335 Gene3D G3DSA:3.40.50.1100 27 320 7.8E-73 T 14-10-2018 YP_2850 e1b8fe6e1b3da795d561a693aa8761f3 304 Pfam PF01478 Type IV leader peptidase family 153 260 1.1E-23 T 14-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 YP_2850 e1b8fe6e1b3da795d561a693aa8761f3 304 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 219 229 1.9E-20 T 14-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial YP_2850 e1b8fe6e1b3da795d561a693aa8761f3 304 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 230 241 1.9E-20 T 14-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial YP_2850 e1b8fe6e1b3da795d561a693aa8761f3 304 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 242 257 1.9E-20 T 14-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial YP_2850 e1b8fe6e1b3da795d561a693aa8761f3 304 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 162 179 1.9E-20 T 14-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial YP_2850 e1b8fe6e1b3da795d561a693aa8761f3 304 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 37 142 6.3E-26 T 14-10-2018 IPR010627 Peptidase A24A, N-terminal YP_1299 5f18217d2488794f2839c61664a82fc7 250 SUPERFAMILY SSF75445 145 229 1.7E-20 T 14-10-2018 YP_1299 5f18217d2488794f2839c61664a82fc7 250 Gene3D G3DSA:3.30.70.260 149 227 1.3E-27 T 14-10-2018 YP_1299 5f18217d2488794f2839c61664a82fc7 250 SUPERFAMILY SSF100950 18 165 5.44E-42 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_1299 5f18217d2488794f2839c61664a82fc7 250 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 24 244 4.0E-82 T 14-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 YP_1299 5f18217d2488794f2839c61664a82fc7 250 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 19 247 30.125 T 14-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 YP_1299 5f18217d2488794f2839c61664a82fc7 250 Gene3D G3DSA:3.40.50.1360 12 148 9.1E-44 T 14-10-2018 YP_1299 5f18217d2488794f2839c61664a82fc7 250 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 68 243 1.3E-58 T 14-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 YP_0773 2a4e7e7a4452dd643fdf525ec2a51a89 434 Gene3D G3DSA:1.10.3120.10 116 417 1.2E-111 T 14-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 YP_0773 2a4e7e7a4452dd643fdf525ec2a51a89 434 TIGRFAM TIGR00115 tig: trigger factor 13 412 4.8E-144 T 14-10-2018 IPR005215 Trigger factor GO:0015031 YP_0773 2a4e7e7a4452dd643fdf525ec2a51a89 434 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 157 230 6.0E-14 T 14-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YP_0773 2a4e7e7a4452dd643fdf525ec2a51a89 434 Gene3D G3DSA:3.30.70.1050 1 115 1.9E-43 T 14-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 YP_0773 2a4e7e7a4452dd643fdf525ec2a51a89 434 SUPERFAMILY SSF109998 248 429 4.32E-48 T 14-10-2018 IPR027304 Trigger factor/SurA domain superfamily YP_0773 2a4e7e7a4452dd643fdf525ec2a51a89 434 PIRSF PIRSF003095 1 434 3.6E-130 T 14-10-2018 IPR005215 Trigger factor GO:0015031 YP_0773 2a4e7e7a4452dd643fdf525ec2a51a89 434 Hamap MF_00303 Trigger factor [tig]. 1 418 21.948 T 14-10-2018 IPR005215 Trigger factor GO:0015031 YP_0773 2a4e7e7a4452dd643fdf525ec2a51a89 434 SUPERFAMILY SSF102735 1 131 1.7E-41 T 14-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 YP_0773 2a4e7e7a4452dd643fdf525ec2a51a89 434 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 3.3E-44 T 14-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 YP_0773 2a4e7e7a4452dd643fdf525ec2a51a89 434 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 262 412 1.1E-40 T 14-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 YP_0773 2a4e7e7a4452dd643fdf525ec2a51a89 434 Gene3D G3DSA:3.10.50.40 150 246 1.2E-111 T 14-10-2018 YP_0773 2a4e7e7a4452dd643fdf525ec2a51a89 434 SUPERFAMILY SSF54534 96 240 9.82E-37 T 14-10-2018 YP_pMT031 f187bd030066731ac766f5e792a226d1 233 SUPERFAMILY SSF110849 22 152 7.67E-24 T 14-10-2018 IPR036086 ParB/Sulfiredoxin superfamily YP_pMT031 f187bd030066731ac766f5e792a226d1 233 Pfam PF02195 ParB-like nuclease domain 23 103 4.3E-18 T 14-10-2018 IPR003115 ParB/Sulfiredoxin YP_pMT031 f187bd030066731ac766f5e792a226d1 233 SMART SM00470 19 104 1.9E-21 T 14-10-2018 IPR003115 ParB/Sulfiredoxin YP_pMT031 f187bd030066731ac766f5e792a226d1 233 Gene3D G3DSA:3.90.1530.30 33 89 1.9E-11 T 14-10-2018 YP_3677 0c51a47b01dc1c081e72b35f42036938 172 Pfam PF05638 Type VI secretion system effector, Hcp 8 147 3.5E-39 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_3677 0c51a47b01dc1c081e72b35f42036938 172 SUPERFAMILY SSF141452 5 169 5.23E-40 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_3677 0c51a47b01dc1c081e72b35f42036938 172 Gene3D G3DSA:2.30.110.20 5 171 1.3E-54 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_3194 e76c4370525707090cc4422892add58a 406 Pfam PF07219 HemY protein N-terminus 26 132 6.1E-32 T 14-10-2018 IPR010817 HemY, N-terminal YP_3194 e76c4370525707090cc4422892add58a 406 Gene3D G3DSA:1.25.40.10 154 404 7.3E-11 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_3194 e76c4370525707090cc4422892add58a 406 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 3 386 5.1E-133 T 14-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 YP_3194 e76c4370525707090cc4422892add58a 406 SUPERFAMILY SSF48452 157 388 5.51E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_0517 53ccdaf13b1003d691aae5f34d970a6c 325 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 17 320 1.5E-129 T 14-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 YP_0517 53ccdaf13b1003d691aae5f34d970a6c 325 Pfam PF00152 tRNA synthetases class II (D, K and N) 14 322 1.8E-45 T 14-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_0517 53ccdaf13b1003d691aae5f34d970a6c 325 SUPERFAMILY SSF55681 13 322 5.36E-82 T 14-10-2018 YP_0517 53ccdaf13b1003d691aae5f34d970a6c 325 Gene3D G3DSA:3.30.930.10 1 325 8.7E-122 T 14-10-2018 YP_0517 53ccdaf13b1003d691aae5f34d970a6c 325 Hamap MF_00174 Elongation factor P--(R)-beta-lysine ligase [epmA]. 2 325 56.575 T 14-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 YP_0517 53ccdaf13b1003d691aae5f34d970a6c 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 99 116 5.9E-6 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YP_0517 53ccdaf13b1003d691aae5f34d970a6c 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 31 41 5.9E-6 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YP_2881 d790adfeda3d66030255c6cd36ca059f 1123 PIRSF PIRSF000980 1 1123 0.0 T 14-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 YP_2881 d790adfeda3d66030255c6cd36ca059f 1123 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1088 0.0 T 14-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 YP_2881 d790adfeda3d66030255c6cd36ca059f 1123 Gene3D G3DSA:3.40.50.300 334 809 1.3E-203 T 14-10-2018 YP_2881 d790adfeda3d66030255c6cd36ca059f 1123 SUPERFAMILY SSF52540 370 811 1.38E-104 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2881 d790adfeda3d66030255c6cd36ca059f 1123 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 1 807 5.6E-302 T 14-10-2018 YP_2881 d790adfeda3d66030255c6cd36ca059f 1123 SUPERFAMILY SSF52980 819 1121 4.83E-98 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 YP_2881 d790adfeda3d66030255c6cd36ca059f 1123 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1123 21.055 T 14-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 YP_2881 d790adfeda3d66030255c6cd36ca059f 1123 Gene3D G3DSA:3.40.50.10930 4 315 1.6E-128 T 14-10-2018 YP_2881 d790adfeda3d66030255c6cd36ca059f 1123 Gene3D G3DSA:1.10.10.990 865 936 5.2E-27 T 14-10-2018 YP_2881 d790adfeda3d66030255c6cd36ca059f 1123 SUPERFAMILY SSF52540 1 347 1.43E-124 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2881 d790adfeda3d66030255c6cd36ca059f 1123 Gene3D G3DSA:1.10.10.160 79 187 1.6E-128 T 14-10-2018 IPR013986 DExx box DNA helicase domain superfamily YP_2881 d790adfeda3d66030255c6cd36ca059f 1123 Gene3D G3DSA:1.10.486.10 456 664 1.3E-203 T 14-10-2018 YP_2711 dfb6cf41957b6c8512d57f730b6006e5 437 SUPERFAMILY SSF53383 31 435 2.02E-122 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_2711 dfb6cf41957b6c8512d57f730b6006e5 437 Pfam PF00202 Aminotransferase class-III 33 434 5.2E-120 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_2711 dfb6cf41957b6c8512d57f730b6006e5 437 PIRSF PIRSF000521 6 142 9.2E-4 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_2711 dfb6cf41957b6c8512d57f730b6006e5 437 PIRSF PIRSF000521 137 437 1.2E-36 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_2711 dfb6cf41957b6c8512d57f730b6006e5 437 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 16 436 1.4E-174 T 14-10-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 YP_2711 dfb6cf41957b6c8512d57f730b6006e5 437 Gene3D G3DSA:3.90.1150.10 15 431 1.4E-145 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_2711 dfb6cf41957b6c8512d57f730b6006e5 437 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 250 288 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_2711 dfb6cf41957b6c8512d57f730b6006e5 437 Gene3D G3DSA:3.40.640.10 66 333 1.4E-145 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_1781 8be59577c7436779124a35e753f33fa4 149 SUPERFAMILY SSF46785 1 61 5.96E-14 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1781 8be59577c7436779124a35e753f33fa4 149 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 47 8.8E-13 T 14-10-2018 YP_1781 8be59577c7436779124a35e753f33fa4 149 Gene3D G3DSA:1.10.10.10 1 50 1.9E-16 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1781 8be59577c7436779124a35e753f33fa4 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 2.1E-11 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YP_1781 8be59577c7436779124a35e753f33fa4 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 2.1E-11 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YP_1781 8be59577c7436779124a35e753f33fa4 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 2.1E-11 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YP_1781 8be59577c7436779124a35e753f33fa4 149 SMART SM00344 1 107 2.1E-25 T 14-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 YP_1781 8be59577c7436779124a35e753f33fa4 149 SUPERFAMILY SSF54909 62 136 8.4E-14 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel YP_1781 8be59577c7436779124a35e753f33fa4 149 Pfam PF01037 Lrp/AsnC ligand binding domain 67 131 1.6E-10 T 14-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YP_1781 8be59577c7436779124a35e753f33fa4 149 Gene3D G3DSA:3.30.70.920 51 136 1.4E-16 T 14-10-2018 YP_1718 663f1ef6d044793a039eac39b1f3afb2 129 SMART SM01022 14 127 7.9E-38 T 14-10-2018 IPR007374 ASCH domain YP_1718 663f1ef6d044793a039eac39b1f3afb2 129 PIRSF PIRSF021320 1 129 3.3E-41 T 14-10-2018 IPR009326 Protein of unknown function DUF984 YP_1718 663f1ef6d044793a039eac39b1f3afb2 129 SUPERFAMILY SSF88697 3 127 2.73E-43 T 14-10-2018 IPR015947 PUA-like superfamily YP_1718 663f1ef6d044793a039eac39b1f3afb2 129 Pfam PF04266 ASCH domain 23 126 3.6E-22 T 14-10-2018 IPR007374 ASCH domain YP_1718 663f1ef6d044793a039eac39b1f3afb2 129 Gene3D G3DSA:3.10.400.10 1 129 3.7E-42 T 14-10-2018 YP_3222 8fe06e2e7d7fdb25e62a22bd8237154c 551 Gene3D G3DSA:3.50.50.60 11 367 6.3E-80 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3222 8fe06e2e7d7fdb25e62a22bd8237154c 551 SUPERFAMILY SSF51905 10 323 6.12E-45 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3222 8fe06e2e7d7fdb25e62a22bd8237154c 551 Pfam PF04324 BFD-like [2Fe-2S] binding domain 433 484 1.7E-9 T 14-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain YP_3222 8fe06e2e7d7fdb25e62a22bd8237154c 551 Pfam PF01266 FAD dependent oxidoreductase 11 360 6.1E-55 T 14-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 YP_3222 8fe06e2e7d7fdb25e62a22bd8237154c 551 Gene3D G3DSA:1.10.10.1100 423 493 3.7E-17 T 14-10-2018 YP_3222 8fe06e2e7d7fdb25e62a22bd8237154c 551 Gene3D G3DSA:3.30.9.10 87 319 6.3E-80 T 14-10-2018 YP_3222 8fe06e2e7d7fdb25e62a22bd8237154c 551 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 353 363 - T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_3222 8fe06e2e7d7fdb25e62a22bd8237154c 551 TIGRFAM TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit 11 540 4.6E-268 T 14-10-2018 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit GO:0004368|GO:0005886|GO:0010181|GO:0046174|GO:0050660|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 YP_3222 8fe06e2e7d7fdb25e62a22bd8237154c 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 23 33 7.3E-22 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_3222 8fe06e2e7d7fdb25e62a22bd8237154c 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 348 360 7.3E-22 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_3222 8fe06e2e7d7fdb25e62a22bd8237154c 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 10 22 7.3E-22 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_3222 8fe06e2e7d7fdb25e62a22bd8237154c 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 312 318 7.3E-22 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_3222 8fe06e2e7d7fdb25e62a22bd8237154c 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 39 51 7.3E-22 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_3222 8fe06e2e7d7fdb25e62a22bd8237154c 551 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 15 32 - T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YP_2654 e6301cecabd54f763475bc38ad36d8db 141 Hamap MF_01127 Acetyltransferase YpeA [ypeA]. 1 141 56.391 T 14-10-2018 IPR023072 Acetyltransferase, YpeA GO:0016747 YP_2654 e6301cecabd54f763475bc38ad36d8db 141 SUPERFAMILY SSF55729 1 130 8.1E-30 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_2654 e6301cecabd54f763475bc38ad36d8db 141 Gene3D G3DSA:3.40.630.30 1 141 2.5E-43 T 14-10-2018 YP_2654 e6301cecabd54f763475bc38ad36d8db 141 Pfam PF00583 Acetyltransferase (GNAT) family 22 123 7.8E-19 T 14-10-2018 IPR000182 GNAT domain YP_2219 3900421b7bba8c1069ad460262660cfa 65 Gene3D G3DSA:2.40.50.530 1 65 2.1E-19 T 14-10-2018 YP_2219 3900421b7bba8c1069ad460262660cfa 65 Pfam PF01632 Ribosomal protein L35 2 60 2.7E-23 T 14-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2219 3900421b7bba8c1069ad460262660cfa 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 14-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_2219 3900421b7bba8c1069ad460262660cfa 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 1.5E-26 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 YP_2219 3900421b7bba8c1069ad460262660cfa 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 5.2E-22 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 YP_2219 3900421b7bba8c1069ad460262660cfa 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 5.2E-22 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 YP_2219 3900421b7bba8c1069ad460262660cfa 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 5.2E-22 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 YP_2219 3900421b7bba8c1069ad460262660cfa 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 18.039 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 YP_2219 3900421b7bba8c1069ad460262660cfa 65 SUPERFAMILY SSF143034 2 64 1.44E-22 T 14-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2249 56bffd59c619bba6e5d8a3e2257added 212 ProSitePatterns PS01331 Thymidylate kinase signature. 95 107 - T 14-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 YP_2249 56bffd59c619bba6e5d8a3e2257added 212 Gene3D G3DSA:3.40.50.300 1 210 1.7E-63 T 14-10-2018 YP_2249 56bffd59c619bba6e5d8a3e2257added 212 Hamap MF_00165 Thymidylate kinase [tmk]. 4 206 28.222 T 14-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 YP_2249 56bffd59c619bba6e5d8a3e2257added 212 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 198 2.2E-63 T 14-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 YP_2249 56bffd59c619bba6e5d8a3e2257added 212 SUPERFAMILY SSF52540 1 208 1.71E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2249 56bffd59c619bba6e5d8a3e2257added 212 Pfam PF02223 Thymidylate kinase 8 198 3.2E-61 T 14-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 YP_3945 65b8da353ce4d797e408c0406d96cde7 177 Pfam PF12486 Type VI secretion system, EvfB, or VasL 24 170 7.2E-56 T 14-10-2018 IPR021069 ImpA, C-terminal YP_1020 6a2a39e2839df237f424b1713e3e6a60 338 Gene3D G3DSA:3.90.25.10 182 328 1.8E-140 T 14-10-2018 YP_1020 6a2a39e2839df237f424b1713e3e6a60 338 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 335 8.5E-143 T 14-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 YP_1020 6a2a39e2839df237f424b1713e3e6a60 338 SUPERFAMILY SSF51735 1 336 1.03E-98 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1020 6a2a39e2839df237f424b1713e3e6a60 338 Gene3D G3DSA:3.40.50.720 3 262 1.8E-140 T 14-10-2018 YP_1020 6a2a39e2839df237f424b1713e3e6a60 338 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 1.7E-63 T 14-10-2018 IPR016040 NAD(P)-binding domain YP_3802 5ec4415105fe0730cf23e7cac1dad8fb 689 Pfam PF04348 LppC putative lipoprotein 361 683 3.1E-91 T 14-10-2018 IPR007443 Penicillin-binding protein activator LpoA YP_3802 5ec4415105fe0730cf23e7cac1dad8fb 689 Pfam PF04348 LppC putative lipoprotein 72 318 2.7E-53 T 14-10-2018 IPR007443 Penicillin-binding protein activator LpoA YP_3802 5ec4415105fe0730cf23e7cac1dad8fb 689 Gene3D G3DSA:1.25.40.650 180 287 2.6E-41 T 14-10-2018 YP_3802 5ec4415105fe0730cf23e7cac1dad8fb 689 Hamap MF_01890 Penicillin-binding protein activator LpoA [lpoA]. 38 683 37.355 T 14-10-2018 IPR007443 Penicillin-binding protein activator LpoA YP_3802 5ec4415105fe0730cf23e7cac1dad8fb 689 Gene3D G3DSA:3.40.50.2300 492 676 9.8E-25 T 14-10-2018 YP_3802 5ec4415105fe0730cf23e7cac1dad8fb 689 Gene3D G3DSA:1.25.40.10 56 179 1.2E-43 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_3802 5ec4415105fe0730cf23e7cac1dad8fb 689 SUPERFAMILY SSF53822 290 688 2.88E-79 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_1332 e473a9e575f6fb3d87bfb9bc6308449d 154 SMART SM00851 25 118 1.3E-26 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain YP_1332 e473a9e575f6fb3d87bfb9bc6308449d 154 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 12 131 32.559 T 14-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 YP_1332 e473a9e575f6fb3d87bfb9bc6308449d 154 SUPERFAMILY SSF52335 6 150 7.59E-57 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily YP_1332 e473a9e575f6fb3d87bfb9bc6308449d 154 Pfam PF02142 MGS-like domain 27 118 2.0E-18 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain YP_1332 e473a9e575f6fb3d87bfb9bc6308449d 154 ProSitePatterns PS01335 Methylglyoxal synthase active site. 65 72 - T 14-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 YP_1332 e473a9e575f6fb3d87bfb9bc6308449d 154 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 11 151 1.0E-64 T 14-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 YP_1332 e473a9e575f6fb3d87bfb9bc6308449d 154 Gene3D G3DSA:3.40.50.1380 1 152 4.5E-67 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily YP_1332 e473a9e575f6fb3d87bfb9bc6308449d 154 PIRSF PIRSF006614 8 151 1.4E-64 T 14-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 YP_3545 03927c34ec72bc78150b59216212fc5c 792 SUPERFAMILY SSF51011 598 679 4.75E-19 T 14-10-2018 YP_3545 03927c34ec72bc78150b59216212fc5c 792 Pfam PF17137 Domain of unknown function (DUF5110) 701 768 1.0E-8 T 14-10-2018 IPR033403 Domain of unknown function DUF5110 YP_3545 03927c34ec72bc78150b59216212fc5c 792 Pfam PF13802 Galactose mutarotase-like 147 214 3.1E-22 T 14-10-2018 IPR025887 Glycoside hydrolase family 31, N-terminal domain YP_3545 03927c34ec72bc78150b59216212fc5c 792 Pfam PF01055 Glycosyl hydrolases family 31 239 683 1.5E-115 T 14-10-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 YP_3545 03927c34ec72bc78150b59216212fc5c 792 Gene3D G3DSA:2.60.40.1180 681 791 1.2E-11 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta YP_3545 03927c34ec72bc78150b59216212fc5c 792 Gene3D G3DSA:2.60.40.1180 631 680 1.1E-13 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta YP_3545 03927c34ec72bc78150b59216212fc5c 792 Gene3D G3DSA:2.60.40.1760 20 243 6.5E-36 T 14-10-2018 YP_3545 03927c34ec72bc78150b59216212fc5c 792 SUPERFAMILY SSF51445 248 595 2.83E-66 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_3545 03927c34ec72bc78150b59216212fc5c 792 Gene3D G3DSA:3.20.20.80 245 628 5.0E-111 T 14-10-2018 YP_3545 03927c34ec72bc78150b59216212fc5c 792 SUPERFAMILY SSF74650 2 244 6.28E-47 T 14-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 YP_3508 69487175222925c1e6fd2538458f23a8 243 SUPERFAMILY SSF88697 2 70 1.71E-17 T 14-10-2018 IPR015947 PUA-like superfamily YP_3508 69487175222925c1e6fd2538458f23a8 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 2 242 6.7E-87 T 14-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 YP_3508 69487175222925c1e6fd2538458f23a8 243 SUPERFAMILY SSF75217 75 242 1.62E-50 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases YP_3508 69487175222925c1e6fd2538458f23a8 243 Gene3D G3DSA:2.40.240.20 1 73 2.1E-21 T 14-10-2018 YP_3508 69487175222925c1e6fd2538458f23a8 243 PIRSF PIRSF015601 2 242 1.2E-53 T 14-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 YP_3508 69487175222925c1e6fd2538458f23a8 243 Gene3D G3DSA:3.40.1280.10 74 243 2.9E-63 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YP_3508 69487175222925c1e6fd2538458f23a8 243 Pfam PF04452 RNA methyltransferase 19 236 4.0E-73 T 14-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 YP_3444 103cc06a85b6ee18c0045e7e10d4c941 361 SUPERFAMILY SSF51445 10 338 6.92E-52 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_3444 103cc06a85b6ee18c0045e7e10d4c941 361 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 34 299 6.3E-12 T 14-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 YP_3444 103cc06a85b6ee18c0045e7e10d4c941 361 Gene3D G3DSA:3.20.20.80 24 317 5.2E-31 T 14-10-2018 YP_1571 2815693313dbaa9e1279d9c5f714c531 178 Pfam PF04347 Flagellar biosynthesis protein, FliO 82 172 1.2E-21 T 14-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 YP_1571 2815693313dbaa9e1279d9c5f714c531 178 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 70 138 2.4E-22 T 14-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 YP_3737 25516b393c83b68b390c7b59f12faa95 389 Gene3D G3DSA:1.10.10.10 293 386 4.1E-5 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3737 25516b393c83b68b390c7b59f12faa95 389 Pfam PF02661 Fic/DOC family 130 240 1.0E-16 T 14-10-2018 IPR003812 Fido domain YP_3737 25516b393c83b68b390c7b59f12faa95 389 Pfam PF13776 Domain of unknown function (DUF4172) 19 100 2.1E-26 T 14-10-2018 IPR025230 Domain of unknown function DUF4172 YP_3737 25516b393c83b68b390c7b59f12faa95 389 Gene3D G3DSA:1.10.3290.10 53 292 5.4E-38 T 14-10-2018 IPR036597 Fido-like domain superfamily YP_3737 25516b393c83b68b390c7b59f12faa95 389 SUPERFAMILY SSF140931 116 311 1.03E-38 T 14-10-2018 IPR036597 Fido-like domain superfamily YP_1106 0d8d6127ace7abffe340b76b8684d167 230 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 23 228 2.1E-58 T 14-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 YP_1106 0d8d6127ace7abffe340b76b8684d167 230 Pfam PF01467 Cytidylyltransferase-like 23 203 2.8E-34 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 YP_1106 0d8d6127ace7abffe340b76b8684d167 230 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 22 84 1.9E-13 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 YP_1106 0d8d6127ace7abffe340b76b8684d167 230 SUPERFAMILY SSF52374 21 229 2.82E-58 T 14-10-2018 YP_1106 0d8d6127ace7abffe340b76b8684d167 230 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 19 229 31.591 T 14-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 YP_1106 0d8d6127ace7abffe340b76b8684d167 230 Gene3D G3DSA:3.40.50.620 18 229 1.3E-66 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_1117 cbc4f6f64d86c39c8ec90cb00addf3da 85 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 82 18.54 T 14-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 YP_1117 cbc4f6f64d86c39c8ec90cb00addf3da 85 Hamap MF_00903 Probable Sec-independent protein translocase protein TatE [tatE]. 1 85 31.381 T 14-10-2018 IPR024905 Sec-independent protein translocase protein TatE YP_1117 cbc4f6f64d86c39c8ec90cb00addf3da 85 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 1.1E-18 T 14-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 YP_1117 cbc4f6f64d86c39c8ec90cb00addf3da 85 Pfam PF02416 mttA/Hcf106 family 4 61 1.2E-12 T 14-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 YP_2389 ddab0767949494ef2d41ef0a9fcb44fd 228 Gene3D G3DSA:1.10.3720.10 1 223 7.3E-49 T 14-10-2018 IPR035906 MetI-like superfamily YP_2389 ddab0767949494ef2d41ef0a9fcb44fd 228 SUPERFAMILY SSF161098 8 205 4.71E-38 T 14-10-2018 IPR035906 MetI-like superfamily YP_2389 ddab0767949494ef2d41ef0a9fcb44fd 228 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 7 114 3.5E-20 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YP_2389 ddab0767949494ef2d41ef0a9fcb44fd 228 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 28 220 3.3E-21 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_3506 a794a698283de7e0a9d467513ea5de85 221 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 35 221 38.942 T 14-10-2018 IPR003774 Protein of unknown function UPF0301 YP_3506 a794a698283de7e0a9d467513ea5de85 221 Gene3D G3DSA:3.40.1740.10 33 221 1.8E-62 T 14-10-2018 YP_3506 a794a698283de7e0a9d467513ea5de85 221 SUPERFAMILY SSF143456 35 221 4.06E-64 T 14-10-2018 YP_3506 a794a698283de7e0a9d467513ea5de85 221 Pfam PF02622 Uncharacterized ACR, COG1678 46 208 1.4E-46 T 14-10-2018 IPR003774 Protein of unknown function UPF0301 YP_2842 9e637de76cf286f152e398effdd241f1 402 Gene3D G3DSA:1.20.81.30 55 172 7.8E-28 T 14-10-2018 YP_2842 9e637de76cf286f152e398effdd241f1 402 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 163 191 - T 14-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 YP_2842 9e637de76cf286f152e398effdd241f1 402 Pfam PF00482 Type II secretion system (T2SS), protein F 271 391 1.6E-21 T 14-10-2018 IPR018076 Type II secretion system F domain YP_2842 9e637de76cf286f152e398effdd241f1 402 Pfam PF00482 Type II secretion system (T2SS), protein F 69 191 2.3E-29 T 14-10-2018 IPR018076 Type II secretion system F domain YP_2842 9e637de76cf286f152e398effdd241f1 402 Gene3D G3DSA:1.20.81.30 255 366 6.5E-22 T 14-10-2018 YP_2842 9e637de76cf286f152e398effdd241f1 402 PRINTS PR00812 Bacterial general secretion pathway protein F signature 64 76 2.6E-34 T 14-10-2018 IPR003004 GspF/PilC family YP_2842 9e637de76cf286f152e398effdd241f1 402 PRINTS PR00812 Bacterial general secretion pathway protein F signature 366 380 2.6E-34 T 14-10-2018 IPR003004 GspF/PilC family YP_2842 9e637de76cf286f152e398effdd241f1 402 PRINTS PR00812 Bacterial general secretion pathway protein F signature 163 191 2.6E-34 T 14-10-2018 IPR003004 GspF/PilC family YP_2842 9e637de76cf286f152e398effdd241f1 402 PRINTS PR00812 Bacterial general secretion pathway protein F signature 382 401 2.6E-34 T 14-10-2018 IPR003004 GspF/PilC family YP_0477 abf716f81bccde1b5128bc8f5dd45e1f 397 PRINTS PR00799 Aspartate aminotransferase signature 176 195 1.8E-36 T 14-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 YP_0477 abf716f81bccde1b5128bc8f5dd45e1f 397 PRINTS PR00799 Aspartate aminotransferase signature 274 299 1.8E-36 T 14-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 YP_0477 abf716f81bccde1b5128bc8f5dd45e1f 397 PRINTS PR00799 Aspartate aminotransferase signature 207 219 1.8E-36 T 14-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 YP_0477 abf716f81bccde1b5128bc8f5dd45e1f 397 PRINTS PR00799 Aspartate aminotransferase signature 342 360 1.8E-36 T 14-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 YP_0477 abf716f81bccde1b5128bc8f5dd45e1f 397 Gene3D G3DSA:3.90.1150.10 11 391 4.8E-155 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_0477 abf716f81bccde1b5128bc8f5dd45e1f 397 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 244 257 - T 14-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 YP_0477 abf716f81bccde1b5128bc8f5dd45e1f 397 Pfam PF00155 Aminotransferase class I and II 27 392 1.2E-78 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YP_0477 abf716f81bccde1b5128bc8f5dd45e1f 397 Gene3D G3DSA:3.40.640.10 60 301 4.8E-155 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_0477 abf716f81bccde1b5128bc8f5dd45e1f 397 SUPERFAMILY SSF53383 1 389 3.81E-115 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_3655 a9581d009134dbf72a0cbb3d472ed37e 553 Gene3D G3DSA:3.40.190.10 113 314 8.0E-31 T 14-10-2018 YP_3655 a9581d009134dbf72a0cbb3d472ed37e 553 Hamap MF_01449 HTH-type transcriptional regulator SgrR [sgrR]. 1 553 69.312 T 14-10-2018 IPR023767 Transcriptional regulator SgrR YP_3655 a9581d009134dbf72a0cbb3d472ed37e 553 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 164 307 1.6E-17 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain YP_3655 a9581d009134dbf72a0cbb3d472ed37e 553 SUPERFAMILY SSF46785 4 56 4.71E-5 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3655 a9581d009134dbf72a0cbb3d472ed37e 553 SUPERFAMILY SSF53850 117 550 1.99E-65 T 14-10-2018 YP_3655 a9581d009134dbf72a0cbb3d472ed37e 553 Pfam PF12793 Sugar transport-related sRNA regulator N-term 5 118 4.6E-42 T 14-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YP_0284 6ace0c790ba7124e0a36ccbbc20cabae 265 SUPERFAMILY SSF51621 4 264 4.13E-105 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YP_0284 6ace0c790ba7124e0a36ccbbc20cabae 265 Gene3D G3DSA:3.20.20.60 1 264 6.9E-105 T 14-10-2018 YP_0284 6ace0c790ba7124e0a36ccbbc20cabae 265 PIRSF PIRSF000388 1 265 3.0E-99 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 YP_0284 6ace0c790ba7124e0a36ccbbc20cabae 265 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 4 264 42.161 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 YP_0284 6ace0c790ba7124e0a36ccbbc20cabae 265 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1 265 4.9E-118 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 YP_0284 6ace0c790ba7124e0a36ccbbc20cabae 265 Pfam PF02548 Ketopantoate hydroxymethyltransferase 4 259 6.4E-106 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 YP_3005 e407655cbc59e0736e16039815a8418a 428 Pfam PF00437 Type II/IV secretion system protein 74 349 2.8E-80 T 14-10-2018 IPR001482 Type II/IV secretion system protein YP_3005 e407655cbc59e0736e16039815a8418a 428 SUPERFAMILY SSF52540 55 358 2.7E-57 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3005 e407655cbc59e0736e16039815a8418a 428 Gene3D G3DSA:3.30.450.380 5 168 6.5E-37 T 14-10-2018 YP_3005 e407655cbc59e0736e16039815a8418a 428 Gene3D G3DSA:3.40.50.300 171 425 5.3E-72 T 14-10-2018 YP_0048 6c2556302d22d5730a666ae7e0cabe70 156 TIGRFAM TIGR00576 dut: dUTP diphosphatase 15 155 1.2E-49 T 14-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 YP_0048 6c2556302d22d5730a666ae7e0cabe70 156 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 11 155 34.47 T 14-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 YP_0048 6c2556302d22d5730a666ae7e0cabe70 156 Gene3D G3DSA:2.70.40.10 2 155 3.8E-55 T 14-10-2018 IPR036157 dUTPase-like superfamily YP_0048 6c2556302d22d5730a666ae7e0cabe70 156 Pfam PF00692 dUTPase 21 154 2.7E-43 T 14-10-2018 IPR029054 dUTPase-like YP_0048 6c2556302d22d5730a666ae7e0cabe70 156 SUPERFAMILY SSF51283 5 155 1.44E-56 T 14-10-2018 IPR036157 dUTPase-like superfamily YP_2434 3600f3ec8a2a6fa39255db0247b76ed3 113 Gene3D G3DSA:2.20.25.10 1 42 3.5E-15 T 14-10-2018 YP_2434 3600f3ec8a2a6fa39255db0247b76ed3 113 SUPERFAMILY SSF57783 3 36 2.55E-12 T 14-10-2018 YP_2434 3600f3ec8a2a6fa39255db0247b76ed3 113 SUPERFAMILY SSF82057 41 112 9.61E-29 T 14-10-2018 YP_2434 3600f3ec8a2a6fa39255db0247b76ed3 113 Pfam PF03831 PhnA domain 47 112 4.3E-34 T 14-10-2018 IPR013988 PhnA protein, C-terminal YP_2434 3600f3ec8a2a6fa39255db0247b76ed3 113 Pfam PF08274 PhnA Zinc-Ribbon 3 32 1.7E-12 T 14-10-2018 IPR013987 PhnA protein, N-terminal YP_2434 3600f3ec8a2a6fa39255db0247b76ed3 113 Gene3D G3DSA:2.30.30.40 43 113 4.4E-35 T 14-10-2018 YP_2434 3600f3ec8a2a6fa39255db0247b76ed3 113 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 4 112 2.9E-49 T 14-10-2018 IPR004624 PhnA protein YP_1035 ae7e45946dbc6ca4f186dcc7e90f104b 228 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 4 224 43.381 T 14-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 YP_1035 ae7e45946dbc6ca4f186dcc7e90f104b 228 Pfam PF01618 MotA/TolQ/ExbB proton channel family 78 207 7.6E-42 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel YP_1035 ae7e45946dbc6ca4f186dcc7e90f104b 228 TIGRFAM TIGR02796 tolQ: protein TolQ 5 219 6.2E-94 T 14-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 YP_2916 256f536e59d5ec09e81c7ed34c7c6fff 213 Gene3D G3DSA:2.60.60.30 19 204 3.5E-53 T 14-10-2018 YP_2916 256f536e59d5ec09e81c7ed34c7c6fff 213 Pfam PF02342 TerD domain 1 203 2.8E-53 T 14-10-2018 IPR003325 TerD domain YP_1875 1d0a7cd665114783f19a2ee797cb47c9 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 279 1.4E-12 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1875 1d0a7cd665114783f19a2ee797cb47c9 288 Gene3D G3DSA:1.10.3720.10 48 279 1.3E-36 T 14-10-2018 IPR035906 MetI-like superfamily YP_1875 1d0a7cd665114783f19a2ee797cb47c9 288 SUPERFAMILY SSF161098 50 272 2.75E-41 T 14-10-2018 IPR035906 MetI-like superfamily YP_2076 599a11cfc90d1588995ca4e601ae3abb 1029 PIRSF PIRSF034585 7 1029 0.0 T 14-10-2018 IPR009216 Virulence factor SrfB YP_2076 599a11cfc90d1588995ca4e601ae3abb 1029 Pfam PF07520 Virulence factor SrfB 7 1026 0.0 T 14-10-2018 IPR009216 Virulence factor SrfB YP_0404 2aaebfcb2fdc766e819efd2491f21fe0 551 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 64 468 2.7E-63 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 YP_0404 2aaebfcb2fdc766e819efd2491f21fe0 551 Pfam PF00474 Sodium:solute symporter family 64 470 3.7E-128 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 YP_0404 2aaebfcb2fdc766e819efd2491f21fe0 551 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 179 204 - T 14-10-2018 IPR018212 Sodium/solute symporter, conserved site YP_0404 2aaebfcb2fdc766e819efd2491f21fe0 551 TIGRFAM TIGR02711 symport_actP: cation/acetate symporter ActP 4 551 0.0 T 14-10-2018 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 YP_0404 2aaebfcb2fdc766e819efd2491f21fe0 551 Gene3D G3DSA:1.20.1730.10 34 548 4.2E-62 T 14-10-2018 IPR038377 Sodium/glucose symporter superfamily YP_0404 2aaebfcb2fdc766e819efd2491f21fe0 551 Hamap MF_01426 Cation/acetate symporter ActP [actP]. 2 551 50.966 T 14-10-2018 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 YP_2316 4bc1aeb6043c1e9602449d88abcbaabd 305 Gene3D G3DSA:3.40.50.2300 128 299 6.2E-75 T 14-10-2018 YP_2316 4bc1aeb6043c1e9602449d88abcbaabd 305 Gene3D G3DSA:3.40.50.2300 36 288 6.2E-75 T 14-10-2018 YP_2316 4bc1aeb6043c1e9602449d88abcbaabd 305 Pfam PF13407 Periplasmic binding protein domain 31 276 2.2E-54 T 14-10-2018 IPR025997 Periplasmic binding protein YP_2316 4bc1aeb6043c1e9602449d88abcbaabd 305 SUPERFAMILY SSF53822 16 300 7.74E-72 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_0609 92197327365c6e978ebb5eabf98fc44e 672 Gene3D G3DSA:2.70.98.70 366 669 3.7E-41 T 14-10-2018 YP_0609 92197327365c6e978ebb5eabf98fc44e 672 Pfam PF07940 Heparinase II/III-like protein 368 515 2.9E-19 T 14-10-2018 IPR012480 Heparinase II/III-like GO:0016829 YP_0609 92197327365c6e978ebb5eabf98fc44e 672 Gene3D G3DSA:1.50.10.100 59 352 1.5E-68 T 14-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 YP_0609 92197327365c6e978ebb5eabf98fc44e 672 SUPERFAMILY SSF48230 13 328 3.2E-35 T 14-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 YP_0609 92197327365c6e978ebb5eabf98fc44e 672 Pfam PF05426 Alginate lyase 101 267 1.1E-4 T 14-10-2018 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 YP_3263 f62d7f0cfd0ea064d612e68051a5e039 268 Gene3D G3DSA:3.40.50.1580 16 268 6.7E-81 T 14-10-2018 YP_3263 f62d7f0cfd0ea064d612e68051a5e039 268 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 81 96 - T 14-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_3263 f62d7f0cfd0ea064d612e68051a5e039 268 SUPERFAMILY SSF53167 21 265 1.83E-73 T 14-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 YP_3263 f62d7f0cfd0ea064d612e68051a5e039 268 Pfam PF01048 Phosphorylase superfamily 36 256 1.7E-38 T 14-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 YP_3263 f62d7f0cfd0ea064d612e68051a5e039 268 TIGRFAM TIGR01718 Uridine-psphlse: uridine phosphorylase 21 268 8.4E-128 T 14-10-2018 IPR010058 Uridine phosphorylase GO:0004850|GO:0005737|GO:0009166 KEGG: 00240+2.4.2.3|KEGG: 00983+2.4.2.3|MetaCyc: PWY-5532 YP_1031 480ea2b02e1f62da38df950aa5781c6f 168 SUPERFAMILY SSF103088 56 167 2.35E-33 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_1031 480ea2b02e1f62da38df950aa5781c6f 168 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 66 168 3.5E-45 T 14-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 YP_1031 480ea2b02e1f62da38df950aa5781c6f 168 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 5 168 31.482 T 14-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 YP_1031 480ea2b02e1f62da38df950aa5781c6f 168 Gene3D G3DSA:3.30.1330.60 39 168 9.5E-48 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_1031 480ea2b02e1f62da38df950aa5781c6f 168 Pfam PF00691 OmpA family 67 162 9.0E-21 T 14-10-2018 IPR006665 OmpA-like domain YP_1031 480ea2b02e1f62da38df950aa5781c6f 168 ProSitePatterns PS01068 OmpA-like domain. 100 144 - T 14-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 YP_1031 480ea2b02e1f62da38df950aa5781c6f 168 PRINTS PR01021 OMPA domain signature 113 129 4.1E-17 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YP_1031 480ea2b02e1f62da38df950aa5781c6f 168 PRINTS PR01021 OMPA domain signature 68 90 4.1E-17 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YP_1031 480ea2b02e1f62da38df950aa5781c6f 168 PRINTS PR01021 OMPA domain signature 98 113 4.1E-17 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YP_0041 f8c9725c5164bdd779e2b848a3f2c202 207 Gene3D G3DSA:3.30.63.10 37 96 7.0E-74 T 14-10-2018 YP_0041 f8c9725c5164bdd779e2b848a3f2c202 207 SMART SM00072 3 187 4.6E-80 T 14-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YP_0041 f8c9725c5164bdd779e2b848a3f2c202 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 4 184 1.6E-74 T 14-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 YP_0041 f8c9725c5164bdd779e2b848a3f2c202 207 ProSitePatterns PS00856 Guanylate kinase-like signature. 40 57 - T 14-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 YP_0041 f8c9725c5164bdd779e2b848a3f2c202 207 Hamap MF_00328 Guanylate kinase [gmk]. 2 187 37.052 T 14-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 YP_0041 f8c9725c5164bdd779e2b848a3f2c202 207 SUPERFAMILY SSF52540 3 189 1.58E-68 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0041 f8c9725c5164bdd779e2b848a3f2c202 207 Gene3D G3DSA:3.40.50.300 8 183 7.0E-74 T 14-10-2018 YP_0041 f8c9725c5164bdd779e2b848a3f2c202 207 Pfam PF00625 Guanylate kinase 5 186 1.4E-66 T 14-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YP_1088 85677b6710450b2d7e3392260fdfc63f 421 Gene3D G3DSA:3.30.420.40 106 399 7.0E-90 T 14-10-2018 YP_1088 85677b6710450b2d7e3392260fdfc63f 421 ProSitePatterns PS01125 ROK family signature. 233 260 - T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YP_1088 85677b6710450b2d7e3392260fdfc63f 421 SUPERFAMILY SSF53067 101 407 1.97E-55 T 14-10-2018 YP_1088 85677b6710450b2d7e3392260fdfc63f 421 Pfam PF01047 MarR family 38 76 1.4E-6 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YP_1088 85677b6710450b2d7e3392260fdfc63f 421 SUPERFAMILY SSF46785 27 92 2.13E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1088 85677b6710450b2d7e3392260fdfc63f 421 Gene3D G3DSA:3.30.420.40 223 391 7.0E-90 T 14-10-2018 YP_1088 85677b6710450b2d7e3392260fdfc63f 421 Gene3D G3DSA:1.10.10.10 18 94 2.2E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1088 85677b6710450b2d7e3392260fdfc63f 421 Pfam PF00480 ROK family 102 405 5.8E-89 T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YP_3714 790dcba2d205d13fcd4a5a41c0edc7b0 815 Gene3D G3DSA:2.60.20.10 9 111 1.3E-17 T 14-10-2018 YP_3714 790dcba2d205d13fcd4a5a41c0edc7b0 815 Gene3D G3DSA:2.60.20.10 112 209 3.6E-22 T 14-10-2018 YP_3714 790dcba2d205d13fcd4a5a41c0edc7b0 815 Gene3D G3DSA:3.40.630.30 658 815 3.4E-6 T 14-10-2018 YP_3714 790dcba2d205d13fcd4a5a41c0edc7b0 815 SUPERFAMILY SSF55729 713 813 6.16E-7 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_3714 790dcba2d205d13fcd4a5a41c0edc7b0 815 SUPERFAMILY SSF49695 27 207 3.89E-16 T 14-10-2018 IPR011024 Gamma-crystallin-like YP_0543 0f49e6ba185b34b9493e5ef78b90b2d4 106 Pfam PF00436 Single-strand binding protein family 5 88 5.3E-14 T 14-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 YP_0543 0f49e6ba185b34b9493e5ef78b90b2d4 106 SUPERFAMILY SSF50249 3 105 4.46E-32 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_0543 0f49e6ba185b34b9493e5ef78b90b2d4 106 Hamap MF_00720 Primosomal replication protein N [priB]. 4 102 24.221 T 14-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 YP_0543 0f49e6ba185b34b9493e5ef78b90b2d4 106 TIGRFAM TIGR04418 PriB_gamma: primosomal replication protein PriB 5 102 1.0E-37 T 14-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 YP_0543 0f49e6ba185b34b9493e5ef78b90b2d4 106 Gene3D G3DSA:2.40.50.140 1 106 3.1E-41 T 14-10-2018 YP_0543 0f49e6ba185b34b9493e5ef78b90b2d4 106 PIRSF PIRSF003135 1 103 3.2E-51 T 14-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 YP_2000 7bd7da05052cb8fde01c837fcdaa7e3e 104 SMART SM00749 42 104 6.4E-8 T 14-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria YP_2000 7bd7da05052cb8fde01c837fcdaa7e3e 104 Pfam PF04972 BON domain 37 103 4.7E-21 T 14-10-2018 IPR007055 BON domain YP_0833 d6b78048ebd45c0a2ff25f37e40522fb 404 SUPERFAMILY SSF103473 17 398 7.59E-56 T 14-10-2018 IPR036259 MFS transporter superfamily YP_0833 d6b78048ebd45c0a2ff25f37e40522fb 404 Pfam PF07690 Major Facilitator Superfamily 30 252 4.8E-21 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_0833 d6b78048ebd45c0a2ff25f37e40522fb 404 Gene3D G3DSA:1.20.1250.20 216 401 1.0E-18 T 14-10-2018 YP_0833 d6b78048ebd45c0a2ff25f37e40522fb 404 Gene3D G3DSA:1.20.1250.20 14 199 4.3E-21 T 14-10-2018 YP_3593 a262ac5c67daeb0ba9887e853d2e124d 141 PIRSF PIRSF020653 1 139 3.0E-76 T 14-10-2018 IPR009883 Inner membrane protein YgfX YP_3593 a262ac5c67daeb0ba9887e853d2e124d 141 Pfam PF07254 Membrane-bound toxin component of toxin-antitoxin system 2 130 1.1E-56 T 14-10-2018 IPR009883 Inner membrane protein YgfX YP_3593 a262ac5c67daeb0ba9887e853d2e124d 141 ProDom PD083358 MEMBRANE YGFX INNER SIMILAR ECS3768 Y3281 ESCHERICHIA TRANSMEMBRANE YPO0896A STY3202 19 130 8.0E-53 T 14-10-2018 IPR009883 Inner membrane protein YgfX YP_1970 e5455b8be4ed0f9803db52d2e21daf98 282 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 10 282 1.2E-128 T 14-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 YP_1970 e5455b8be4ed0f9803db52d2e21daf98 282 Pfam PF00551 Formyl transferase 88 264 4.0E-53 T 14-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YP_1970 e5455b8be4ed0f9803db52d2e21daf98 282 SUPERFAMILY SSF53328 88 281 1.2E-60 T 14-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YP_1970 e5455b8be4ed0f9803db52d2e21daf98 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 110 137 4.1E-67 T 14-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 YP_1970 e5455b8be4ed0f9803db52d2e21daf98 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 234 256 4.1E-67 T 14-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 YP_1970 e5455b8be4ed0f9803db52d2e21daf98 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 256 281 4.1E-67 T 14-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 YP_1970 e5455b8be4ed0f9803db52d2e21daf98 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 11 37 4.1E-67 T 14-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 YP_1970 e5455b8be4ed0f9803db52d2e21daf98 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 43 55 4.1E-67 T 14-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 YP_1970 e5455b8be4ed0f9803db52d2e21daf98 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 88 110 4.1E-67 T 14-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 YP_1970 e5455b8be4ed0f9803db52d2e21daf98 282 Pfam PF01842 ACT domain 10 70 5.3E-7 T 14-10-2018 IPR002912 ACT domain YP_1970 e5455b8be4ed0f9803db52d2e21daf98 282 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 6 282 45.55 T 14-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 YP_1970 e5455b8be4ed0f9803db52d2e21daf98 282 PIRSF PIRSF036480 6 282 4.7E-115 T 14-10-2018 YP_1970 e5455b8be4ed0f9803db52d2e21daf98 282 SUPERFAMILY SSF55021 9 58 2.42E-8 T 14-10-2018 YP_1970 e5455b8be4ed0f9803db52d2e21daf98 282 Gene3D G3DSA:3.40.50.170 87 282 7.8E-67 T 14-10-2018 YP_1970 e5455b8be4ed0f9803db52d2e21daf98 282 Gene3D G3DSA:3.30.70.260 3 85 1.3E-15 T 14-10-2018 YP_1244 46bfab8c9a4c087cf9bdf9e6c85abb17 242 Gene3D G3DSA:3.40.50.300 1 241 2.1E-69 T 14-10-2018 YP_1244 46bfab8c9a4c087cf9bdf9e6c85abb17 242 Pfam PF00005 ABC transporter 20 170 9.8E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1244 46bfab8c9a4c087cf9bdf9e6c85abb17 242 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1244 46bfab8c9a4c087cf9bdf9e6c85abb17 242 SMART SM00382 27 218 1.3E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1244 46bfab8c9a4c087cf9bdf9e6c85abb17 242 SUPERFAMILY SSF52540 3 234 2.66E-68 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1244 46bfab8c9a4c087cf9bdf9e6c85abb17 242 PIRSF PIRSF039085 1 242 5.7E-83 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 YP_1637 eca189c194d2d1dbdafd73a1e618fedb 153 PIRSF PIRSF020687 1 152 2.2E-73 T 14-10-2018 IPR009328 Protein of unknown function DUF986 YP_1637 eca189c194d2d1dbdafd73a1e618fedb 153 Pfam PF06173 Protein of unknown function (DUF986) 4 151 4.4E-66 T 14-10-2018 IPR009328 Protein of unknown function DUF986 YP_1637 eca189c194d2d1dbdafd73a1e618fedb 153 ProDom PD091196 MEMBRANE UPF0266 TRANSMEMBRANE INNER YOBD PLU2700 LMO0779 PM0830 YPO1755/Y2554/YP1637 LIN0773 22 144 2.0E-57 T 14-10-2018 IPR009328 Protein of unknown function DUF986 YP_1637 eca189c194d2d1dbdafd73a1e618fedb 153 Hamap MF_01071 UPF0266 membrane protein YobD [yobD]. 1 152 33.576 T 14-10-2018 IPR009328 Protein of unknown function DUF986 YP_2483 1d169b9ef9d54f419c1bcf6511fda731 280 Gene3D G3DSA:1.10.10.60 168 271 5.5E-19 T 14-10-2018 YP_2483 1d169b9ef9d54f419c1bcf6511fda731 280 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 222 264 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YP_2483 1d169b9ef9d54f419c1bcf6511fda731 280 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 237 252 3.7E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_2483 1d169b9ef9d54f419c1bcf6511fda731 280 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 252 268 3.7E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_2483 1d169b9ef9d54f419c1bcf6511fda731 280 SUPERFAMILY SSF51182 8 88 2.85E-10 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily YP_2483 1d169b9ef9d54f419c1bcf6511fda731 280 Pfam PF02311 AraC-like ligand binding domain 28 71 1.1E-4 T 14-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 YP_2483 1d169b9ef9d54f419c1bcf6511fda731 280 SUPERFAMILY SSF46689 221 272 1.3E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2483 1d169b9ef9d54f419c1bcf6511fda731 280 Pfam PF12833 Helix-turn-helix domain 196 269 9.5E-16 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_2483 1d169b9ef9d54f419c1bcf6511fda731 280 Gene3D G3DSA:2.60.120.10 8 94 1.3E-7 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_2483 1d169b9ef9d54f419c1bcf6511fda731 280 SMART SM00342 185 268 5.6E-18 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_3848 5b39ca157dae606654a1865590905ddc 555 Pfam PF00128 Alpha amylase, catalytic domain 30 374 4.0E-122 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YP_3848 5b39ca157dae606654a1865590905ddc 555 Gene3D G3DSA:3.20.20.80 174 477 6.5E-108 T 14-10-2018 YP_3848 5b39ca157dae606654a1865590905ddc 555 SUPERFAMILY SSF51011 477 553 1.5E-17 T 14-10-2018 YP_3848 5b39ca157dae606654a1865590905ddc 555 SUPERFAMILY SSF51445 5 474 4.37E-151 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_3848 5b39ca157dae606654a1865590905ddc 555 SMART SM00642 15 416 7.3E-154 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YP_3848 5b39ca157dae606654a1865590905ddc 555 Gene3D G3DSA:3.20.20.80 2 110 2.4E-48 T 14-10-2018 YP_3848 5b39ca157dae606654a1865590905ddc 555 Gene3D G3DSA:3.90.400.10 111 173 6.7E-27 T 14-10-2018 YP_3848 5b39ca157dae606654a1865590905ddc 555 Pfam PF11941 Domain of unknown function (DUF3459) 461 536 1.0E-4 T 14-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) YP_3848 5b39ca157dae606654a1865590905ddc 555 TIGRFAM TIGR02403 trehalose_treC: alpha,alpha-phosphotrehalase 7 552 2.9E-248 T 14-10-2018 IPR012769 Trehalose-6-phosphate hydrolase GO:0005737|GO:0005993|GO:0008788 KEGG: 00500+3.2.1.93 YP_3848 5b39ca157dae606654a1865590905ddc 555 Gene3D G3DSA:2.60.40.1180 478 552 1.7E-15 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta YP_0087 d9f4c4df99e0657b1325bc916a233504 273 Gene3D G3DSA:3.40.50.10320 34 273 6.2E-96 T 14-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 YP_0087 d9f4c4df99e0657b1325bc916a233504 273 SUPERFAMILY SSF102588 34 272 1.57E-50 T 14-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 YP_0087 d9f4c4df99e0657b1325bc916a233504 273 Pfam PF02585 GlcNAc-PI de-N-acetylase 38 166 5.2E-22 T 14-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 YP_2029 c4610969150a8bda3f68286e2481f785 267 TIGRFAM TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase 37 267 3.3E-125 T 14-10-2018 IPR004661 L-ribulose-5-phosphate 4-epimerase GO:0008270|GO:0008742|GO:0019572 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 YP_2029 c4610969150a8bda3f68286e2481f785 267 SUPERFAMILY SSF53639 37 259 5.69E-67 T 14-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YP_2029 c4610969150a8bda3f68286e2481f785 267 SMART SM01007 43 234 8.8E-66 T 14-10-2018 IPR001303 Class II aldolase/adducin N-terminal YP_2029 c4610969150a8bda3f68286e2481f785 267 Gene3D G3DSA:3.40.225.10 37 267 5.9E-59 T 14-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YP_2029 c4610969150a8bda3f68286e2481f785 267 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 44 232 7.1E-45 T 14-10-2018 IPR001303 Class II aldolase/adducin N-terminal YP_3536 416246d98281be2c7ca2092d6cf2cdaa 352 SUPERFAMILY SSF48208 36 351 2.04E-52 T 14-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 YP_3536 416246d98281be2c7ca2092d6cf2cdaa 352 Gene3D G3DSA:1.50.10.10 7 352 1.7E-105 T 14-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 YP_3536 416246d98281be2c7ca2092d6cf2cdaa 352 Pfam PF07470 Glycosyl Hydrolase Family 88 41 351 6.4E-72 T 14-10-2018 IPR010905 Glycosyl hydrolase, family 88 YP_1909 eed9659ee05493354a3937b721c5a20f 529 Gene3D G3DSA:3.40.50.720 50 475 1.5E-167 T 14-10-2018 YP_1909 eed9659ee05493354a3937b721c5a20f 529 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 47 527 91.102 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YP_1909 eed9659ee05493354a3937b721c5a20f 529 SUPERFAMILY SSF51735 34 227 5.31E-58 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1909 eed9659ee05493354a3937b721c5a20f 529 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 226 526 1.3E-115 T 14-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YP_1909 eed9659ee05493354a3937b721c5a20f 529 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 365 391 9.1E-47 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YP_1909 eed9659ee05493354a3937b721c5a20f 529 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 256 273 9.1E-47 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YP_1909 eed9659ee05493354a3937b721c5a20f 529 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 274 290 9.1E-47 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YP_1909 eed9659ee05493354a3937b721c5a20f 529 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 180 193 9.1E-47 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YP_1909 eed9659ee05493354a3937b721c5a20f 529 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 204 232 9.1E-47 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YP_1909 eed9659ee05493354a3937b721c5a20f 529 PIRSF PIRSF000110 35 529 6.4E-182 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YP_1909 eed9659ee05493354a3937b721c5a20f 529 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 214 220 - T 14-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YP_1909 eed9659ee05493354a3937b721c5a20f 529 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 47 527 4.9E-199 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YP_1909 eed9659ee05493354a3937b721c5a20f 529 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 51 224 6.7E-58 T 14-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YP_1909 eed9659ee05493354a3937b721c5a20f 529 SUPERFAMILY SSF55347 214 526 6.87E-113 T 14-10-2018 YP_1909 eed9659ee05493354a3937b721c5a20f 529 Gene3D G3DSA:3.30.360.10 214 514 1.5E-167 T 14-10-2018 YP_3386 43cb7935d2986aeb08063727aa03783a 319 SUPERFAMILY SSF81345 5 313 1.57E-67 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_3386 43cb7935d2986aeb08063727aa03783a 319 Pfam PF01032 FecCD transport family 13 313 4.1E-65 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YP_3386 43cb7935d2986aeb08063727aa03783a 319 Gene3D G3DSA:1.10.3470.10 1 318 8.9E-65 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_3738 6b99e2a74f1f2aa67e04f6984419dcf1 423 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 66 136 1.8E-19 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 YP_3738 6b99e2a74f1f2aa67e04f6984419dcf1 423 SUPERFAMILY SSF47413 5 59 1.19E-9 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_3738 6b99e2a74f1f2aa67e04f6984419dcf1 423 Gene3D G3DSA:1.10.260.40 5 64 2.9E-7 T 14-10-2018 YP_3738 6b99e2a74f1f2aa67e04f6984419dcf1 423 SMART SM00530 6 62 5.0E-9 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_3738 6b99e2a74f1f2aa67e04f6984419dcf1 423 Pfam PF13521 AAA domain 234 394 2.4E-33 T 14-10-2018 IPR038727 NadR/Ttd14, AAA domain YP_3738 6b99e2a74f1f2aa67e04f6984419dcf1 423 SUPERFAMILY SSF52540 232 404 1.52E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3738 6b99e2a74f1f2aa67e04f6984419dcf1 423 Pfam PF01381 Helix-turn-helix 7 58 2.9E-9 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_3738 6b99e2a74f1f2aa67e04f6984419dcf1 423 SUPERFAMILY SSF52374 65 229 5.09E-20 T 14-10-2018 YP_3738 6b99e2a74f1f2aa67e04f6984419dcf1 423 Gene3D G3DSA:3.40.50.620 65 230 3.1E-45 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_3738 6b99e2a74f1f2aa67e04f6984419dcf1 423 Gene3D G3DSA:3.40.50.300 231 399 1.2E-57 T 14-10-2018 YP_3738 6b99e2a74f1f2aa67e04f6984419dcf1 423 PIRSF PIRSF004776 2 415 7.9E-221 T 14-10-2018 IPR016429 Bifunctional transcriptional regulator NadR GO:0045892 KEGG: 00760+2.7.7.1+2.7.1.22 YP_3738 6b99e2a74f1f2aa67e04f6984419dcf1 423 TIGRFAM TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase 64 395 3.8E-154 T 14-10-2018 IPR006417 Nicotinamide-nucleotide adenylyltransferase GO:0000309|GO:0009435 KEGG: 00760+2.7.7.1+2.7.1.22 YP_2317 ced3903fddf815a5728275fd4c54263a 395 SUPERFAMILY SSF50129 44 228 1.23E-43 T 14-10-2018 IPR011032 GroES-like superfamily YP_2317 ced3903fddf815a5728275fd4c54263a 395 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 72 186 3.4E-25 T 14-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 YP_2317 ced3903fddf815a5728275fd4c54263a 395 SMART SM00829 55 393 0.0018 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 YP_2317 ced3903fddf815a5728275fd4c54263a 395 SUPERFAMILY SSF51735 196 350 5.11E-36 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2317 ced3903fddf815a5728275fd4c54263a 395 Pfam PF00107 Zinc-binding dehydrogenase 229 344 2.6E-23 T 14-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 YP_2317 ced3903fddf815a5728275fd4c54263a 395 Gene3D G3DSA:3.90.180.10 55 383 1.9E-94 T 14-10-2018 YP_2317 ced3903fddf815a5728275fd4c54263a 395 Gene3D G3DSA:3.40.50.720 206 343 1.9E-94 T 14-10-2018 YP_1974 7e182e411284c5073c201b70d493c287 135 Gene3D G3DSA:1.10.287.1050 1 83 9.1E-37 T 14-10-2018 IPR027454 Histone-like protein H-NS, N-terminal GO:0046983 YP_1974 7e182e411284c5073c201b70d493c287 135 SMART SM00528 87 135 5.0E-23 T 14-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 YP_1974 7e182e411284c5073c201b70d493c287 135 SUPERFAMILY SSF81273 93 135 1.14E-11 T 14-10-2018 YP_1974 7e182e411284c5073c201b70d493c287 135 SUPERFAMILY SSF81273 2 58 2.94E-18 T 14-10-2018 YP_1974 7e182e411284c5073c201b70d493c287 135 Gene3D G3DSA:4.10.430.10 91 135 5.1E-25 T 14-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 YP_1974 7e182e411284c5073c201b70d493c287 135 Pfam PF00816 H-NS histone family 32 127 4.3E-19 T 14-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 YP_1974 7e182e411284c5073c201b70d493c287 135 PIRSF PIRSF002096 1 135 1.5E-56 T 14-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 YP_1395 70e9f5f46b991fa4175c8b0fd70bd1d9 220 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 38 218 9.4E-85 T 14-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 YP_1395 70e9f5f46b991fa4175c8b0fd70bd1d9 220 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 96 112 - T 14-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 YP_1395 70e9f5f46b991fa4175c8b0fd70bd1d9 220 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 144 154 - T 14-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 YP_1395 70e9f5f46b991fa4175c8b0fd70bd1d9 220 Gene3D G3DSA:1.10.286.10 1 84 1.0E-39 T 14-10-2018 YP_1395 70e9f5f46b991fa4175c8b0fd70bd1d9 220 Gene3D G3DSA:3.30.1130.10 85 220 3.2E-54 T 14-10-2018 YP_1395 70e9f5f46b991fa4175c8b0fd70bd1d9 220 SUPERFAMILY SSF55620 5 219 1.85E-74 T 14-10-2018 YP_1395 70e9f5f46b991fa4175c8b0fd70bd1d9 220 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 34 217 33.834 T 14-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 YP_1395 70e9f5f46b991fa4175c8b0fd70bd1d9 220 Pfam PF01227 GTP cyclohydrolase I 38 216 3.7E-63 T 14-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 YP_2887 666ca31f3b58eb2e5adf47124eedc379 136 Pfam PF07681 DoxX 13 93 2.6E-16 T 14-10-2018 IPR032808 DoxX family YP_2627 72d727b4639428e294474d724d5e85e0 486 Gene3D G3DSA:1.20.1730.10 22 485 9.4E-26 T 14-10-2018 IPR038377 Sodium/glucose symporter superfamily YP_1629 8ee323a14de53a14359114e8a709b81e 285 Gene3D G3DSA:3.40.830.10 1 284 4.7E-81 T 14-10-2018 YP_1629 8ee323a14de53a14359114e8a709b81e 285 TIGRFAM TIGR02298 HpaD_Fe: 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1 281 1.1E-155 T 14-10-2018 IPR011984 3,4-dihydroxyphenylacetate 2,3-dioxygenase GO:0008687 KEGG: 00350+1.13.11.15 YP_1629 8ee323a14de53a14359114e8a709b81e 285 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 7 279 2.8E-80 T 14-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 YP_1629 8ee323a14de53a14359114e8a709b81e 285 SUPERFAMILY SSF53213 12 279 4.05E-46 T 14-10-2018 YP_0992 783b078d8f915a32f38eaa1f2eff7c5b 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 67 5.1E-13 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YP_0992 783b078d8f915a32f38eaa1f2eff7c5b 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 2.0E-5 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YP_0992 783b078d8f915a32f38eaa1f2eff7c5b 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 2.0E-5 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YP_0992 783b078d8f915a32f38eaa1f2eff7c5b 206 Gene3D G3DSA:1.10.357.10 14 204 4.7E-46 T 14-10-2018 YP_0992 783b078d8f915a32f38eaa1f2eff7c5b 206 SUPERFAMILY SSF46689 10 86 1.49E-16 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0992 783b078d8f915a32f38eaa1f2eff7c5b 206 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 92 200 4.4E-34 T 14-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal YP_0992 783b078d8f915a32f38eaa1f2eff7c5b 206 Hamap MF_00768 HTH-type transcriptional regulator BetI [betI]. 1 206 101.502 T 14-10-2018 IPR017757 Transcriptional repressor BetI YP_0992 783b078d8f915a32f38eaa1f2eff7c5b 206 TIGRFAM TIGR03384 betaine_BetI: transcriptional repressor BetI 10 200 1.1E-79 T 14-10-2018 IPR017757 Transcriptional repressor BetI YP_0992 783b078d8f915a32f38eaa1f2eff7c5b 206 ProSitePatterns PS01081 TetR-type HTH domain signature. 34 65 - T 14-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YP_0992 783b078d8f915a32f38eaa1f2eff7c5b 206 SUPERFAMILY SSF48498 91 202 3.38E-21 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YP_3009 3cc86ba348f89d2191fe86cb7db8d86e 140 Gene3D G3DSA:1.20.120.1220 3 139 3.5E-6 T 14-10-2018 YP_3009 3cc86ba348f89d2191fe86cb7db8d86e 140 Pfam PF01478 Type IV leader peptidase family 12 108 2.0E-12 T 14-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 YP_3612 39e4491dab8dbdcaafabf48cef276706 218 Gene3D G3DSA:3.40.50.1360 7 207 3.6E-75 T 14-10-2018 YP_3612 39e4491dab8dbdcaafabf48cef276706 218 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 215 4.0E-69 T 14-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 YP_3612 39e4491dab8dbdcaafabf48cef276706 218 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 217 34.577 T 14-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 YP_3612 39e4491dab8dbdcaafabf48cef276706 218 SUPERFAMILY SSF75445 127 198 2.49E-23 T 14-10-2018 YP_3612 39e4491dab8dbdcaafabf48cef276706 218 Gene3D G3DSA:3.30.70.260 125 196 3.6E-75 T 14-10-2018 YP_3612 39e4491dab8dbdcaafabf48cef276706 218 SUPERFAMILY SSF100950 1 146 2.56E-48 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_3612 39e4491dab8dbdcaafabf48cef276706 218 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 49 213 1.1E-57 T 14-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 YP_3556 589c07aca832cbb11a7a1415a32532f3 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 56 328 3.4E-50 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_3127 5f64aa8fdcd0a6e5504cc02a9e1c279e 205 Pfam PF06438 Heme-binding protein A (HasA) 1 205 2.4E-88 T 14-10-2018 IPR010495 Haem-binding HasA YP_3127 5f64aa8fdcd0a6e5504cc02a9e1c279e 205 SUPERFAMILY SSF54621 2 176 1.14E-67 T 14-10-2018 IPR036912 Haem-binding HasA superfamily YP_3127 5f64aa8fdcd0a6e5504cc02a9e1c279e 205 PIRSF PIRSF019876 1 205 2.3E-84 T 14-10-2018 IPR010495 Haem-binding HasA YP_3127 5f64aa8fdcd0a6e5504cc02a9e1c279e 205 Gene3D G3DSA:3.30.1500.10 1 180 3.7E-81 T 14-10-2018 IPR036912 Haem-binding HasA superfamily YP_2672 89db6e576a8111fea0b3fa81b4b60ec4 369 Gene3D G3DSA:3.40.190.10 52 351 1.4E-113 T 14-10-2018 YP_2672 89db6e576a8111fea0b3fa81b4b60ec4 369 Pfam PF13416 Bacterial extracellular solute-binding protein 66 326 6.8E-22 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein YP_2672 89db6e576a8111fea0b3fa81b4b60ec4 369 Gene3D G3DSA:3.40.190.10 149 364 1.4E-113 T 14-10-2018 YP_2672 89db6e576a8111fea0b3fa81b4b60ec4 369 SUPERFAMILY SSF53850 47 346 5.02E-52 T 14-10-2018 YP_0792 a17bbf5f4af18ee5e3aea8c688b10060 181 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 84 163 5.7E-25 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 YP_0792 a17bbf5f4af18ee5e3aea8c688b10060 181 SUPERFAMILY SSF46767 82 164 4.84E-25 T 14-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 YP_0792 a17bbf5f4af18ee5e3aea8c688b10060 181 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 83 146 3.8E-15 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 YP_0792 a17bbf5f4af18ee5e3aea8c688b10060 181 Gene3D G3DSA:1.10.10.10 81 181 1.4E-34 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2411 c56b0eee221c24495d7e0c72c09d6a87 289 SUPERFAMILY SSF55166 35 285 4.87E-100 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YP_2411 c56b0eee221c24495d7e0c72c09d6a87 289 Pfam PF03411 Penicillin-insensitive murein endopeptidase 50 283 8.2E-95 T 14-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 YP_2411 c56b0eee221c24495d7e0c72c09d6a87 289 Hamap MF_01623 Penicillin-insensitive murein endopeptidase [mepA]. 15 287 62.629 T 14-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 YP_2411 c56b0eee221c24495d7e0c72c09d6a87 289 Gene3D G3DSA:3.30.1380.10 34 287 9.3E-100 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YP_2411 c56b0eee221c24495d7e0c72c09d6a87 289 PIRSF PIRSF018455 7 289 7.0E-119 T 14-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 YP_0157 76eb1d68a32d203942fcd91869ba86c6 229 PIRSF PIRSF001461 4 229 1.8E-107 T 14-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 YP_0157 76eb1d68a32d203942fcd91869ba86c6 229 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 140 162 - T 14-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 YP_0157 76eb1d68a32d203942fcd91869ba86c6 229 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 9 220 6.3E-99 T 14-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 YP_0157 76eb1d68a32d203942fcd91869ba86c6 229 SUPERFAMILY SSF51366 7 222 1.67E-77 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 YP_0157 76eb1d68a32d203942fcd91869ba86c6 229 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 37 51 - T 14-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 YP_0157 76eb1d68a32d203942fcd91869ba86c6 229 Gene3D G3DSA:3.20.20.70 9 225 1.4E-84 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_0157 76eb1d68a32d203942fcd91869ba86c6 229 Pfam PF00834 Ribulose-phosphate 3 epimerase family 10 207 2.5E-93 T 14-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 YP_3505 655dcbcc50e88327b28b430fee53516a 140 SMART SM00732 4 104 5.6E-43 T 14-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 YP_3505 655dcbcc50e88327b28b430fee53516a 140 Gene3D G3DSA:3.30.420.140 2 139 4.8E-47 T 14-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 YP_3505 655dcbcc50e88327b28b430fee53516a 140 SUPERFAMILY SSF53098 4 137 2.58E-43 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_3505 655dcbcc50e88327b28b430fee53516a 140 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 7 136 3.0E-59 T 14-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 YP_3505 655dcbcc50e88327b28b430fee53516a 140 Pfam PF03652 Holliday junction resolvase 5 137 3.5E-43 T 14-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 YP_3505 655dcbcc50e88327b28b430fee53516a 140 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 4 139 26.091 T 14-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 YP_1585 c7141f3595d76a469f142283c0bf1a6b 554 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 4 354 2.9E-72 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_1585 c7141f3595d76a469f142283c0bf1a6b 554 Pfam PF00460 Flagella basal body rod protein 6 35 1.4E-5 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YP_1585 c7141f3595d76a469f142283c0bf1a6b 554 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 493 551 1.1E-5 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_1585 c7141f3595d76a469f142283c0bf1a6b 554 PRINTS PR01005 Flagellar hook-associated protein signature 12 35 1.1E-83 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_1585 c7141f3595d76a469f142283c0bf1a6b 554 PRINTS PR01005 Flagellar hook-associated protein signature 124 144 1.1E-83 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_1585 c7141f3595d76a469f142283c0bf1a6b 554 PRINTS PR01005 Flagellar hook-associated protein signature 157 181 1.1E-83 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_1585 c7141f3595d76a469f142283c0bf1a6b 554 PRINTS PR01005 Flagellar hook-associated protein signature 360 382 1.1E-83 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_1585 c7141f3595d76a469f142283c0bf1a6b 554 PRINTS PR01005 Flagellar hook-associated protein signature 472 493 1.1E-83 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_1585 c7141f3595d76a469f142283c0bf1a6b 554 PRINTS PR01005 Flagellar hook-associated protein signature 519 543 1.1E-83 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_1585 c7141f3595d76a469f142283c0bf1a6b 554 PRINTS PR01005 Flagellar hook-associated protein signature 50 72 1.1E-83 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_1585 c7141f3595d76a469f142283c0bf1a6b 554 PRINTS PR01005 Flagellar hook-associated protein signature 216 234 1.1E-83 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_1585 c7141f3595d76a469f142283c0bf1a6b 554 PRINTS PR01005 Flagellar hook-associated protein signature 447 466 1.1E-83 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_1585 c7141f3595d76a469f142283c0bf1a6b 554 PRINTS PR01005 Flagellar hook-associated protein signature 260 282 1.1E-83 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_1585 c7141f3595d76a469f142283c0bf1a6b 554 SUPERFAMILY SSF64518 100 551 4.84E-47 T 14-10-2018 YP_0387 f5e5c430ae5bfaca3836e18be0bcd3ed 427 SMART SM01091 343 420 3.4E-23 T 14-10-2018 IPR005170 Transporter-associated domain YP_0387 f5e5c430ae5bfaca3836e18be0bcd3ed 427 Gene3D G3DSA:3.10.580.10 202 331 3.9E-43 T 14-10-2018 YP_0387 f5e5c430ae5bfaca3836e18be0bcd3ed 427 SUPERFAMILY SSF56176 341 424 8.45E-19 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YP_0387 f5e5c430ae5bfaca3836e18be0bcd3ed 427 Gene3D G3DSA:3.30.465.10 341 419 9.7E-25 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YP_0387 f5e5c430ae5bfaca3836e18be0bcd3ed 427 SUPERFAMILY SSF54631 193 330 1.01E-22 T 14-10-2018 YP_0387 f5e5c430ae5bfaca3836e18be0bcd3ed 427 Pfam PF03471 Transporter associated domain 345 418 3.0E-17 T 14-10-2018 IPR005170 Transporter-associated domain YP_0387 f5e5c430ae5bfaca3836e18be0bcd3ed 427 Pfam PF00571 CBS domain 279 327 0.0024 T 14-10-2018 IPR000644 CBS domain YP_0387 f5e5c430ae5bfaca3836e18be0bcd3ed 427 Pfam PF01595 Domain of unknown function DUF21 12 185 5.2E-51 T 14-10-2018 IPR002550 CNNM, transmembrane domain YP_2329 ec6f27a4fa83100d8e7792bba6f57c29 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2329 ec6f27a4fa83100d8e7792bba6f57c29 240 SUPERFAMILY SSF52540 1 235 1.73E-80 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2329 ec6f27a4fa83100d8e7792bba6f57c29 240 Pfam PF00005 ABC transporter 17 165 8.2E-37 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2329 ec6f27a4fa83100d8e7792bba6f57c29 240 PIRSF PIRSF039085 1 240 1.2E-109 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 YP_2329 ec6f27a4fa83100d8e7792bba6f57c29 240 Gene3D G3DSA:3.40.50.300 1 240 1.2E-79 T 14-10-2018 YP_2329 ec6f27a4fa83100d8e7792bba6f57c29 240 SMART SM00382 26 213 8.2E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2481 db1047a61ae4d80e1e84d1aec7a5a17a 453 PIRSF PIRSF006351 1 446 1.9E-126 T 14-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 YP_2481 db1047a61ae4d80e1e84d1aec7a5a17a 453 Pfam PF02378 Phosphotransferase system, EIIC 30 363 2.9E-44 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 YP_2481 db1047a61ae4d80e1e84d1aec7a5a17a 453 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 12 438 4.6E-155 T 14-10-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 YP_2481 db1047a61ae4d80e1e84d1aec7a5a17a 453 TIGRFAM TIGR00359 cello_pts_IIC: PTS system, cellobiose-specific IIC component 12 438 4.6E-155 T 14-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 YP_0956 17672127f17ae460973859d3e1255c11 367 Pfam PF05076 Suppressor of fused protein (SUFU) 201 363 3.7E-22 T 14-10-2018 IPR020941 Suppressor of fused-like domain Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5610787|Reactome: R-HSA-5632684 YP_2312 f376752b6a692701924850681399598d 313 Gene3D G3DSA:3.40.190.10 166 266 4.0E-56 T 14-10-2018 YP_2312 f376752b6a692701924850681399598d 313 Pfam PF03466 LysR substrate binding domain 90 294 2.8E-34 T 14-10-2018 IPR005119 LysR, substrate-binding YP_2312 f376752b6a692701924850681399598d 313 SUPERFAMILY SSF46785 8 114 4.99E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_2312 f376752b6a692701924850681399598d 313 Gene3D G3DSA:1.10.10.10 6 94 1.1E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2312 f376752b6a692701924850681399598d 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 6.7E-15 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2312 f376752b6a692701924850681399598d 313 Gene3D G3DSA:3.40.190.10 95 291 4.0E-56 T 14-10-2018 YP_2312 f376752b6a692701924850681399598d 313 SUPERFAMILY SSF53850 91 298 1.79E-38 T 14-10-2018 YP_3397 47a45151ba7d080ca86b78255cc28f6a 394 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 384 1.0E-48 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_3173 0205cc2d1e093047e36e5cff2c5adb20 691 Gene3D G3DSA:1.10.10.160 126 199 1.4E-99 T 14-10-2018 IPR013986 DExx box DNA helicase domain superfamily YP_3173 0205cc2d1e093047e36e5cff2c5adb20 691 SUPERFAMILY SSF52540 16 657 1.25E-161 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3173 0205cc2d1e093047e36e5cff2c5adb20 691 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 20 684 0.0 T 14-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 YP_3173 0205cc2d1e093047e36e5cff2c5adb20 691 Gene3D G3DSA:3.40.50.300 292 650 2.3E-133 T 14-10-2018 YP_3173 0205cc2d1e093047e36e5cff2c5adb20 691 Gene3D G3DSA:3.40.50.300 22 284 1.4E-99 T 14-10-2018 YP_3173 0205cc2d1e093047e36e5cff2c5adb20 691 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 19 686 40.681 T 14-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 YP_3173 0205cc2d1e093047e36e5cff2c5adb20 691 Gene3D G3DSA:1.10.486.10 395 562 2.3E-133 T 14-10-2018 YP_3173 0205cc2d1e093047e36e5cff2c5adb20 691 Pfam PF00580 UvrD/REP helicase N-terminal domain 21 283 1.5E-74 T 14-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 YP_3173 0205cc2d1e093047e36e5cff2c5adb20 691 Pfam PF13361 UvrD-like helicase C-terminal domain 289 631 1.4E-70 T 14-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 YP_3570 1e5f417f8c925ec0a8a2705b0971ad8f 64 Pfam PF14206 Cysteine-rich CPCC 5 59 2.1E-21 T 14-10-2018 IPR025983 Cysteine-rich CPCC domain YP_2535 58d6fba5dd2af73f33e584d4b4bb2591 486 Gene3D G3DSA:3.40.190.10 129 224 1.2E-64 T 14-10-2018 YP_2535 58d6fba5dd2af73f33e584d4b4bb2591 486 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 5 475 49.47 T 14-10-2018 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 YP_2535 58d6fba5dd2af73f33e584d4b4bb2591 486 Gene3D G3DSA:1.10.530.10 285 468 1.3E-33 T 14-10-2018 YP_2535 58d6fba5dd2af73f33e584d4b4bb2591 486 Pfam PF01464 Transglycosylase SLT domain 298 402 2.7E-23 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 YP_2535 58d6fba5dd2af73f33e584d4b4bb2591 486 SMART SM00062 44 268 1.6E-37 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_2535 58d6fba5dd2af73f33e584d4b4bb2591 486 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 51 267 5.9E-35 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_2535 58d6fba5dd2af73f33e584d4b4bb2591 486 Gene3D G3DSA:3.40.190.10 38 263 1.2E-64 T 14-10-2018 YP_2535 58d6fba5dd2af73f33e584d4b4bb2591 486 SUPERFAMILY SSF53850 45 267 4.35E-40 T 14-10-2018 YP_2535 58d6fba5dd2af73f33e584d4b4bb2591 486 SUPERFAMILY SSF53955 290 451 2.15E-35 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_2535 58d6fba5dd2af73f33e584d4b4bb2591 486 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 309 337 - T 14-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 Gene3D G3DSA:1.20.990.10 307 411 8.5E-75 T 14-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 SUPERFAMILY SSF63380 254 473 1.54E-63 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 PRINTS PR00369 Flavodoxin signature 159 169 4.5E-14 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 PRINTS PR00369 Flavodoxin signature 183 202 4.5E-14 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 PRINTS PR00369 Flavodoxin signature 79 92 4.5E-14 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 PRINTS PR00369 Flavodoxin signature 127 138 4.5E-14 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 Gene3D G3DSA:3.40.50.80 472 626 8.2E-59 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 413 420 4.6E-29 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 483 502 4.6E-29 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 552 568 4.6E-29 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 575 583 4.6E-29 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 297 307 4.6E-29 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 508 517 4.6E-29 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 521 532 4.6E-29 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 446 455 4.6E-29 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 Pfam PF00258 Flavodoxin 81 209 2.2E-31 T 14-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 24 626 2.2E-269 T 14-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 Gene3D G3DSA:2.40.30.10 259 466 8.5E-75 T 14-10-2018 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 Pfam PF00667 FAD binding domain 257 451 1.1E-26 T 14-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 Gene3D G3DSA:3.40.50.360 73 232 5.6E-46 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 SUPERFAMILY SSF52218 77 223 1.88E-42 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 SUPERFAMILY SSF52343 471 626 7.46E-52 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 Hamap MF_01541 Sulfite reductase [NADPH] flavoprotein alpha-component [cysJ]. 16 626 51.672 T 14-10-2018 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 PIRSF PIRSF000207 15 626 7.7E-273 T 14-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YP_0314 9c86fd5646f135db1628d4b28ba93cac 626 Pfam PF00175 Oxidoreductase NAD-binding domain 484 590 7.0E-20 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 YP_0798 d3feee73d064470cea55564f2ba10150 1050 SUPERFAMILY SSF82693 566 670 8.37E-32 T 14-10-2018 YP_0798 d3feee73d064470cea55564f2ba10150 1050 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1043 0.0 T 14-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 YP_0798 d3feee73d064470cea55564f2ba10150 1050 Gene3D G3DSA:3.30.70.1430 570 674 0.0 T 14-10-2018 YP_0798 d3feee73d064470cea55564f2ba10150 1050 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_0798 d3feee73d064470cea55564f2ba10150 1050 Gene3D G3DSA:1.20.1640.10 8 515 0.0 T 14-10-2018 YP_0798 d3feee73d064470cea55564f2ba10150 1050 Gene3D G3DSA:3.30.70.1440 675 865 0.0 T 14-10-2018 YP_0798 d3feee73d064470cea55564f2ba10150 1050 SUPERFAMILY SSF82866 296 497 4.97E-49 T 14-10-2018 YP_0798 d3feee73d064470cea55564f2ba10150 1050 Gene3D G3DSA:1.20.1640.10 516 1026 0.0 T 14-10-2018 YP_0798 d3feee73d064470cea55564f2ba10150 1050 Gene3D G3DSA:3.30.2090.10 725 813 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_0798 d3feee73d064470cea55564f2ba10150 1050 SUPERFAMILY SSF82866 807 1032 2.09E-44 T 14-10-2018 YP_0798 d3feee73d064470cea55564f2ba10150 1050 Pfam PF00873 AcrB/AcrD/AcrF family 1 1029 0.0 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0798 d3feee73d064470cea55564f2ba10150 1050 Gene3D G3DSA:3.30.70.1430 38 821 0.0 T 14-10-2018 YP_0798 d3feee73d064470cea55564f2ba10150 1050 SUPERFAMILY SSF82693 38 132 8.11E-27 T 14-10-2018 YP_0798 d3feee73d064470cea55564f2ba10150 1050 SUPERFAMILY SSF82714 724 811 1.31E-20 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_0798 d3feee73d064470cea55564f2ba10150 1050 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 6.1E-115 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0798 d3feee73d064470cea55564f2ba10150 1050 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 6.1E-115 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0798 d3feee73d064470cea55564f2ba10150 1050 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 6.1E-115 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0798 d3feee73d064470cea55564f2ba10150 1050 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 6.1E-115 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0798 d3feee73d064470cea55564f2ba10150 1050 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 6.1E-115 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0798 d3feee73d064470cea55564f2ba10150 1050 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 6.1E-115 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0798 d3feee73d064470cea55564f2ba10150 1050 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 6.1E-115 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0798 d3feee73d064470cea55564f2ba10150 1050 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 6.1E-115 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0798 d3feee73d064470cea55564f2ba10150 1050 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 6.1E-115 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YP_0798 d3feee73d064470cea55564f2ba10150 1050 SUPERFAMILY SSF82693 135 330 1.74E-28 T 14-10-2018 YP_0798 d3feee73d064470cea55564f2ba10150 1050 Gene3D G3DSA:3.30.70.1320 133 330 0.0 T 14-10-2018 YP_0798 d3feee73d064470cea55564f2ba10150 1050 SUPERFAMILY SSF82714 182 272 2.09E-20 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YP_1247 b156399faa7b0f7802c2feee3147d610 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 39 214 1.0E-12 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1247 b156399faa7b0f7802c2feee3147d610 222 SUPERFAMILY SSF161098 6 200 1.83E-28 T 14-10-2018 IPR035906 MetI-like superfamily YP_1247 b156399faa7b0f7802c2feee3147d610 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 5 110 2.9E-15 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YP_1247 b156399faa7b0f7802c2feee3147d610 222 Gene3D G3DSA:1.10.3720.10 1 216 1.1E-38 T 14-10-2018 IPR035906 MetI-like superfamily YP_3481 7ca6109478a83add97dc476438aa055b 720 Gene3D G3DSA:3.40.640.10 109 420 2.4E-86 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_3481 7ca6109478a83add97dc476438aa055b 720 TIGRFAM TIGR04301 ODC_inducible: ornithine decarboxylase SpeF 1 718 0.0 T 14-10-2018 IPR027568 Ornithine decarboxylase SpeF GO:0004586 KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 YP_3481 7ca6109478a83add97dc476438aa055b 720 Gene3D G3DSA:3.40.50.220 2 108 3.2E-23 T 14-10-2018 IPR027464 Ornithine decarboxylase, N-terminal KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 YP_3481 7ca6109478a83add97dc476438aa055b 720 SUPERFAMILY SSF53383 109 566 1.54E-119 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_3481 7ca6109478a83add97dc476438aa055b 720 SUPERFAMILY SSF52172 1 108 2.44E-31 T 14-10-2018 IPR011006 CheY-like superfamily YP_3481 7ca6109478a83add97dc476438aa055b 720 Gene3D G3DSA:3.90.1150.10 421 600 1.6E-71 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_3481 7ca6109478a83add97dc476438aa055b 720 SUPERFAMILY SSF55904 571 719 9.68E-47 T 14-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 YP_3481 7ca6109478a83add97dc476438aa055b 720 PIRSF PIRSF009393 2 720 3.0E-292 T 14-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 YP_3481 7ca6109478a83add97dc476438aa055b 720 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 576 705 1.8E-48 T 14-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 YP_3481 7ca6109478a83add97dc476438aa055b 720 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 109 550 8.8E-196 T 14-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 YP_3481 7ca6109478a83add97dc476438aa055b 720 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 350 364 - T 14-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 YP_3481 7ca6109478a83add97dc476438aa055b 720 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 4 103 9.5E-22 T 14-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 YP_3481 7ca6109478a83add97dc476438aa055b 720 Gene3D G3DSA:3.90.100.10 601 720 2.6E-41 T 14-10-2018 YP_3670 af74e2decb98b6b1a002a5ae5f90b07b 367 SUPERFAMILY SSF141571 16 169 5.76E-21 T 14-10-2018 YP_3670 af74e2decb98b6b1a002a5ae5f90b07b 367 Pfam PF13599 Pentapeptide repeats (9 copies) 21 85 7.0E-8 T 14-10-2018 IPR001646 Pentapeptide repeat YP_3670 af74e2decb98b6b1a002a5ae5f90b07b 367 Pfam PF13599 Pentapeptide repeats (9 copies) 210 276 2.2E-11 T 14-10-2018 IPR001646 Pentapeptide repeat YP_3670 af74e2decb98b6b1a002a5ae5f90b07b 367 Pfam PF00805 Pentapeptide repeats (8 copies) 291 321 0.0029 T 14-10-2018 IPR001646 Pentapeptide repeat YP_3670 af74e2decb98b6b1a002a5ae5f90b07b 367 Gene3D G3DSA:2.160.20.100 13 175 5.7E-23 T 14-10-2018 YP_3670 af74e2decb98b6b1a002a5ae5f90b07b 367 SUPERFAMILY SSF141571 157 325 7.26E-35 T 14-10-2018 YP_3670 af74e2decb98b6b1a002a5ae5f90b07b 367 Gene3D G3DSA:2.160.20.100 176 330 2.5E-29 T 14-10-2018 YP_0997 8c1b1bf29277f35f3e9a50de14373f28 152 Gene3D G3DSA:3.90.1170.40 3 152 2.4E-54 T 14-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 YP_0997 8c1b1bf29277f35f3e9a50de14373f28 152 SUPERFAMILY SSF54690 7 152 1.7E-53 T 14-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 YP_0997 8c1b1bf29277f35f3e9a50de14373f28 152 Pfam PF02391 MoaE protein 14 123 1.1E-35 T 14-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 YP_1382 1ad067832b1a2c4b7f84793fc5c73836 214 Pfam PF16809 NleF caspase inhibitor 56 207 1.7E-59 T 14-10-2018 IPR031829 Effector protein NleF YP_0458 6c206ac874ce80773d91066e37e8f137 212 Pfam PF06551 Protein of unknown function (DUF1120) 30 98 6.8E-8 T 14-10-2018 IPR010546 Protein of unknown function DUF1120 YP_pMT085 d448efe7848c23b029cdbe6a3c8a05ca 307 Pfam PF06445 GyrI-like small molecule binding domain 133 275 2.7E-10 T 14-10-2018 IPR029442 GyrI-like small molecule binding domain YP_pMT085 d448efe7848c23b029cdbe6a3c8a05ca 307 Gene3D G3DSA:1.10.10.60 8 64 4.4E-17 T 14-10-2018 YP_pMT085 d448efe7848c23b029cdbe6a3c8a05ca 307 Gene3D G3DSA:1.10.10.60 65 126 8.0E-16 T 14-10-2018 YP_pMT085 d448efe7848c23b029cdbe6a3c8a05ca 307 SMART SM00342 28 111 2.0E-26 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_pMT085 d448efe7848c23b029cdbe6a3c8a05ca 307 SUPERFAMILY SSF55136 210 275 3.66E-12 T 14-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily YP_pMT085 d448efe7848c23b029cdbe6a3c8a05ca 307 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 62 107 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YP_pMT085 d448efe7848c23b029cdbe6a3c8a05ca 307 Pfam PF12833 Helix-turn-helix domain 38 111 2.0E-18 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_pMT085 d448efe7848c23b029cdbe6a3c8a05ca 307 Gene3D G3DSA:3.20.80.10 132 277 8.6E-14 T 14-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily YP_pMT085 d448efe7848c23b029cdbe6a3c8a05ca 307 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 95 111 1.8E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_pMT085 d448efe7848c23b029cdbe6a3c8a05ca 307 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 80 95 1.8E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_pMT085 d448efe7848c23b029cdbe6a3c8a05ca 307 SUPERFAMILY SSF46689 64 111 9.41E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_1940 19874cec2b421cda76b315b8f201b09d 390 Gene3D G3DSA:1.20.1250.20 1 378 1.3E-25 T 14-10-2018 YP_1940 19874cec2b421cda76b315b8f201b09d 390 Pfam PF07690 Major Facilitator Superfamily 10 287 1.3E-9 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_1940 19874cec2b421cda76b315b8f201b09d 390 SUPERFAMILY SSF103473 7 388 1.22E-30 T 14-10-2018 IPR036259 MFS transporter superfamily YP_3503 b7602887d5e61b5569c51013b92a5d08 371 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 24 369 4.4E-121 T 14-10-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 YP_3503 b7602887d5e61b5569c51013b92a5d08 371 SUPERFAMILY SSF55909 13 370 3.03E-139 T 14-10-2018 YP_3503 b7602887d5e61b5569c51013b92a5d08 371 Hamap MF_01841 Agmatine deiminase [aguA]. 15 370 59.51 T 14-10-2018 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 YP_3503 b7602887d5e61b5569c51013b92a5d08 371 Gene3D G3DSA:3.75.10.10 12 371 5.3E-139 T 14-10-2018 YP_3503 b7602887d5e61b5569c51013b92a5d08 371 TIGRFAM TIGR03380 agmatine_aguA: agmatine deiminase 16 370 1.1E-175 T 14-10-2018 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 YP_3684 14967588ee9a29525a7fe229e3b6046f 780 Gene3D G3DSA:2.60.450.10 44 146 1.4E-6 T 14-10-2018 YP_3684 14967588ee9a29525a7fe229e3b6046f 780 Pfam PF03968 OstA-like protein 53 193 3.0E-30 T 14-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal YP_3684 14967588ee9a29525a7fe229e3b6046f 780 Pfam PF04453 Organic solvent tolerance protein 307 693 6.3E-107 T 14-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 YP_3684 14967588ee9a29525a7fe229e3b6046f 780 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 3 759 19.914 T 14-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 YP_2928 fafc531d0987bb80f9130703a1dfe61b 1117 Gene3D G3DSA:1.50.10.10 602 1026 1.3E-71 T 14-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 YP_2928 fafc531d0987bb80f9130703a1dfe61b 1117 SUPERFAMILY SSF48208 567 1091 1.11E-36 T 14-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 YP_2384 6e37a4456e585b1563fd48cc5b8d84c8 195 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 1 179 6.6E-37 T 14-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 YP_2384 6e37a4456e585b1563fd48cc5b8d84c8 195 Gene3D G3DSA:3.60.21.10 1 195 3.2E-64 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like YP_2384 6e37a4456e585b1563fd48cc5b8d84c8 195 SUPERFAMILY SSF56300 1 186 9.18E-36 T 14-10-2018 YP_2384 6e37a4456e585b1563fd48cc5b8d84c8 195 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 173 1.0E-21 T 14-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 YP_2384 6e37a4456e585b1563fd48cc5b8d84c8 195 ProSitePatterns PS01269 Uncharacterized protein family UPF0025 signature. 132 156 - T 14-10-2018 IPR020935 Phosphodiesterase YfcE, conserved site YP_2780 8a1ef0ba2ced73fdcb9d2ca4f5b61bd9 235 Pfam PF01980 Uncharacterised protein family UPF0066 21 142 4.1E-39 T 14-10-2018 IPR023370 YaeB-like, N-terminal domain YP_2780 8a1ef0ba2ced73fdcb9d2ca4f5b61bd9 235 ProSitePatterns PS01318 TsaA-like domain signature. 87 98 - T 14-10-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site YP_2780 8a1ef0ba2ced73fdcb9d2ca4f5b61bd9 235 Gene3D G3DSA:2.40.30.70 24 147 1.2E-48 T 14-10-2018 IPR036414 YaeB, N-terminal domain superfamily YP_2780 8a1ef0ba2ced73fdcb9d2ca4f5b61bd9 235 Gene3D G3DSA:3.30.2310.10 148 231 1.2E-22 T 14-10-2018 YP_2780 8a1ef0ba2ced73fdcb9d2ca4f5b61bd9 235 SUPERFAMILY SSF118196 1 230 4.58E-86 T 14-10-2018 IPR036413 YaeB-like superfamily YP_2780 8a1ef0ba2ced73fdcb9d2ca4f5b61bd9 235 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 2 149 2.5E-57 T 14-10-2018 IPR023370 YaeB-like, N-terminal domain YP_1535 61ae347a80600f80494e91c7776f6469 392 Gene3D G3DSA:2.120.10.80 197 385 2.7E-6 T 14-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 YP_1535 61ae347a80600f80494e91c7776f6469 392 Hamap MF_01195 N-acetylneuraminate epimerase [nanM]. 17 392 46.604 T 14-10-2018 IPR019936 Mutatrotase, YjhT-like YP_1535 61ae347a80600f80494e91c7776f6469 392 SUPERFAMILY SSF117281 55 381 4.84E-30 T 14-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 YP_1535 61ae347a80600f80494e91c7776f6469 392 TIGRFAM TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family 38 385 1.6E-153 T 14-10-2018 IPR019936 Mutatrotase, YjhT-like YP_1535 61ae347a80600f80494e91c7776f6469 392 Gene3D G3DSA:2.120.10.80 23 183 1.5E-15 T 14-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 YP_1535 61ae347a80600f80494e91c7776f6469 392 Pfam PF01344 Kelch motif 91 140 1.5E-9 T 14-10-2018 IPR006652 Kelch repeat type 1 GO:0005515 YP_1141 9bf7f27b649b1424f95d75168b6029db 2004 SUPERFAMILY SSF48239 1509 1766 1.35E-15 T 14-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid YP_1141 9bf7f27b649b1424f95d75168b6029db 2004 Pfam PF00207 Alpha-2-macroglobulin family 1307 1385 3.8E-11 T 14-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 YP_1141 9bf7f27b649b1424f95d75168b6029db 2004 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 1101 1239 1.9E-11 T 14-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 YP_1141 9bf7f27b649b1424f95d75168b6029db 2004 Gene3D G3DSA:2.60.40.3710 129 210 1.5E-5 T 14-10-2018 YP_1141 9bf7f27b649b1424f95d75168b6029db 2004 Gene3D G3DSA:1.50.10.20 1505 1775 1.8E-9 T 14-10-2018 YP_1141 9bf7f27b649b1424f95d75168b6029db 2004 SMART SM01360 1306 1398 2.6E-22 T 14-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 YP_1141 9bf7f27b649b1424f95d75168b6029db 2004 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 623 726 8.1E-24 T 14-10-2018 YP_1141 9bf7f27b649b1424f95d75168b6029db 2004 Pfam PF01835 MG2 domain 737 833 1.7E-15 T 14-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 YP_1141 9bf7f27b649b1424f95d75168b6029db 2004 SMART SM01359 1101 1240 8.2E-33 T 14-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 YP_3165 0ea6360e5d9f6f89ec23d049d02e6b83 272 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 58 181 8.7E-40 T 14-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YP_3165 0ea6360e5d9f6f89ec23d049d02e6b83 272 Gene3D G3DSA:2.60.40.10 188 272 2.1E-18 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3165 0ea6360e5d9f6f89ec23d049d02e6b83 272 SUPERFAMILY SSF49354 52 181 4.45E-37 T 14-10-2018 IPR008962 PapD-like superfamily YP_3165 0ea6360e5d9f6f89ec23d049d02e6b83 272 Gene3D G3DSA:2.60.40.10 59 181 2.1E-36 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_3165 0ea6360e5d9f6f89ec23d049d02e6b83 272 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 207 265 1.5E-14 T 14-10-2018 IPR016148 Pili assembly chaperone, C-terminal YP_3165 0ea6360e5d9f6f89ec23d049d02e6b83 272 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 135 152 - T 14-10-2018 IPR018046 Pili assembly chaperone, conserved site YP_3165 0ea6360e5d9f6f89ec23d049d02e6b83 272 PRINTS PR00969 Pili chaperone signature 163 178 1.1E-28 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3165 0ea6360e5d9f6f89ec23d049d02e6b83 272 PRINTS PR00969 Pili chaperone signature 107 128 1.1E-28 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3165 0ea6360e5d9f6f89ec23d049d02e6b83 272 PRINTS PR00969 Pili chaperone signature 136 153 1.1E-28 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3165 0ea6360e5d9f6f89ec23d049d02e6b83 272 PRINTS PR00969 Pili chaperone signature 58 67 1.1E-28 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3165 0ea6360e5d9f6f89ec23d049d02e6b83 272 PRINTS PR00969 Pili chaperone signature 202 217 1.1E-28 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YP_3165 0ea6360e5d9f6f89ec23d049d02e6b83 272 SUPERFAMILY SSF49584 175 267 9.03E-19 T 14-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_0286 2bc5c6c155d6bd0af526712a9fddc44e 473 Gene3D G3DSA:1.10.3090.10 199 450 9.7E-104 T 14-10-2018 YP_0286 2bc5c6c155d6bd0af526712a9fddc44e 473 SUPERFAMILY SSF81891 199 437 1.83E-50 T 14-10-2018 YP_0286 2bc5c6c155d6bd0af526712a9fddc44e 473 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 11 464 38.457 T 14-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 YP_0286 2bc5c6c155d6bd0af526712a9fddc44e 473 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 36 465 2.5E-159 T 14-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 YP_0286 2bc5c6c155d6bd0af526712a9fddc44e 473 SUPERFAMILY SSF81301 38 197 3.81E-40 T 14-10-2018 YP_0286 2bc5c6c155d6bd0af526712a9fddc44e 473 Gene3D G3DSA:3.30.460.10 33 198 3.0E-65 T 14-10-2018 YP_0286 2bc5c6c155d6bd0af526712a9fddc44e 473 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 228 288 1.1E-19 T 14-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 YP_0286 2bc5c6c155d6bd0af526712a9fddc44e 473 Pfam PF01743 Poly A polymerase head domain 67 201 1.1E-39 T 14-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 YP_0286 2bc5c6c155d6bd0af526712a9fddc44e 473 Pfam PF12626 Polymerase A arginine-rich C-terminus 346 465 5.3E-44 T 14-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain YP_3667 360cd848fd1693e7b036b1d5a8362ea9 163 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 10 139 3.7E-11 T 14-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN YP_3667 360cd848fd1693e7b036b1d5a8362ea9 163 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 17 152 2.3E-19 T 14-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN YP_3667 360cd848fd1693e7b036b1d5a8362ea9 163 Gene3D G3DSA:2.60.40.4150 34 163 2.8E-5 T 14-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily YP_0359 81610202801b8cee76855ec06eb6b8a6 269 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 5.9E-15 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_0359 81610202801b8cee76855ec06eb6b8a6 269 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 14-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 YP_0359 81610202801b8cee76855ec06eb6b8a6 269 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 5.6E-6 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_0359 81610202801b8cee76855ec06eb6b8a6 269 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 5.6E-6 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_0359 81610202801b8cee76855ec06eb6b8a6 269 SUPERFAMILY SSF46785 5 60 2.6E-7 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0359 81610202801b8cee76855ec06eb6b8a6 269 SMART SM00420 6 58 7.4E-14 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_0359 81610202801b8cee76855ec06eb6b8a6 269 SMART SM01134 90 250 3.0E-63 T 14-10-2018 YP_0359 81610202801b8cee76855ec06eb6b8a6 269 SUPERFAMILY SSF100950 93 249 1.99E-29 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_0359 81610202801b8cee76855ec06eb6b8a6 269 Pfam PF00455 DeoR C terminal sensor domain 92 248 1.5E-50 T 14-10-2018 IPR014036 DeoR C-terminal sensor domain YP_2905 4350ecf0f5c0870fcf3276d3782b7c22 331 SUPERFAMILY SSF51735 2 152 4.57E-40 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2905 4350ecf0f5c0870fcf3276d3782b7c22 331 Gene3D G3DSA:3.30.360.10 135 325 1.2E-51 T 14-10-2018 YP_2905 4350ecf0f5c0870fcf3276d3782b7c22 331 Gene3D G3DSA:3.40.50.720 1 134 5.0E-33 T 14-10-2018 YP_2905 4350ecf0f5c0870fcf3276d3782b7c22 331 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 118 2.5E-23 T 14-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 YP_2905 4350ecf0f5c0870fcf3276d3782b7c22 331 SUPERFAMILY SSF55347 127 292 5.07E-23 T 14-10-2018 YP_2557 a8c5e2761f279270251d4f62cc4d65bf 185 Gene3D G3DSA:1.10.10.10 22 165 6.7E-56 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2557 a8c5e2761f279270251d4f62cc4d65bf 185 Hamap MF_01176 HTH-type transcriptional regulator IscR [iscR]. 22 185 52.305 T 14-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 YP_2557 a8c5e2761f279270251d4f62cc4d65bf 185 Pfam PF02082 Transcriptional regulator 22 104 3.3E-27 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type YP_2557 a8c5e2761f279270251d4f62cc4d65bf 185 SUPERFAMILY SSF46785 23 154 1.57E-36 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_2557 a8c5e2761f279270251d4f62cc4d65bf 185 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 22 155 5.3E-67 T 14-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 YP_2557 a8c5e2761f279270251d4f62cc4d65bf 185 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 70 88 - T 14-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site YP_2557 a8c5e2761f279270251d4f62cc4d65bf 185 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 22 152 2.8E-47 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type YP_1596 d0d9e829897fb299a527342a81fd3e31 100 SUPERFAMILY SSF101498 3 92 4.97E-13 T 14-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily YP_1596 d0d9e829897fb299a527342a81fd3e31 100 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 3 93 7.4E-19 T 14-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 YP_1596 d0d9e829897fb299a527342a81fd3e31 100 Pfam PF04316 Anti-sigma-28 factor, FlgM 43 91 3.0E-10 T 14-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal YP_3372 0e041f7ec115a276fdf49e49795b286c 563 Pfam PF08019 Domain of unknown function (DUF1705) 56 221 1.5E-19 T 14-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 YP_3372 0e041f7ec115a276fdf49e49795b286c 563 Pfam PF00884 Sulfatase 250 538 1.1E-39 T 14-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 YP_3372 0e041f7ec115a276fdf49e49795b286c 563 Gene3D G3DSA:3.40.720.10 244 554 1.1E-55 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YP_3372 0e041f7ec115a276fdf49e49795b286c 563 SUPERFAMILY SSF53649 250 546 3.74E-15 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YP_1431 a1c88ee338198b93c5f31b8d874eba09 204 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 105 3.6E-31 T 14-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 YP_1431 a1c88ee338198b93c5f31b8d874eba09 204 Gene3D G3DSA:1.10.287.1080 112 204 6.0E-28 T 14-10-2018 YP_1431 a1c88ee338198b93c5f31b8d874eba09 204 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 8 203 37.667 T 14-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 YP_1431 a1c88ee338198b93c5f31b8d874eba09 204 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 116 201 8.0E-16 T 14-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 YP_1431 a1c88ee338198b93c5f31b8d874eba09 204 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 115 197 9.3E-30 T 14-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 YP_1431 a1c88ee338198b93c5f31b8d874eba09 204 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 112 198 18.275 T 14-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 YP_1431 a1c88ee338198b93c5f31b8d874eba09 204 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 105 3.0E-26 T 14-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 YP_1431 a1c88ee338198b93c5f31b8d874eba09 204 SUPERFAMILY SSF101386 114 202 2.4E-23 T 14-10-2018 YP_1431 a1c88ee338198b93c5f31b8d874eba09 204 SUPERFAMILY SSF141734 5 122 1.11E-46 T 14-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 YP_1431 a1c88ee338198b93c5f31b8d874eba09 204 Gene3D G3DSA:3.10.20.400 3 97 1.0E-34 T 14-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 YP_0688 e99ac255caeec44f1e448ab39ffb6451 815 Gene3D G3DSA:1.20.140.10 360 507 1.2E-100 T 14-10-2018 YP_0688 e99ac255caeec44f1e448ab39ffb6451 815 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 147 233 5.1E-17 T 14-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 YP_0688 e99ac255caeec44f1e448ab39ffb6451 815 Pfam PF09317 Domain of unknown function (DUF1974) 514 792 1.3E-117 T 14-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 YP_0688 e99ac255caeec44f1e448ab39ffb6451 815 SUPERFAMILY SSF56645 119 355 7.72E-46 T 14-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 YP_0688 e99ac255caeec44f1e448ab39ffb6451 815 SUPERFAMILY SSF47203 360 507 5.15E-20 T 14-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 YP_0688 e99ac255caeec44f1e448ab39ffb6451 815 Gene3D G3DSA:1.10.540.10 122 235 1.2E-100 T 14-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 YP_0688 e99ac255caeec44f1e448ab39ffb6451 815 Gene3D G3DSA:2.40.110.10 236 359 1.2E-100 T 14-10-2018 YP_0688 e99ac255caeec44f1e448ab39ffb6451 815 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 360 507 1.1E-10 T 14-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 YP_0556 6f93087d885c75848feda0e9636a1f3f 70 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 1 65 6.0E-32 T 14-10-2018 IPR009491 Protein of unknown function DUF1107 YP_0556 6f93087d885c75848feda0e9636a1f3f 70 Pfam PF06526 Protein of unknown function (DUF1107) 1 63 2.8E-29 T 14-10-2018 IPR009491 Protein of unknown function DUF1107 YP_0556 6f93087d885c75848feda0e9636a1f3f 70 Gene3D G3DSA:3.30.1910.10 1 64 1.2E-26 T 14-10-2018 YP_3218 350529f8a5506de69cd3b476989d0e1f 337 Gene3D G3DSA:3.40.50.1820 27 335 3.8E-44 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_3218 350529f8a5506de69cd3b476989d0e1f 337 SUPERFAMILY SSF53474 36 329 5.65E-36 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_3218 350529f8a5506de69cd3b476989d0e1f 337 Pfam PF12146 Serine aminopeptidase, S33 54 314 1.1E-54 T 14-10-2018 IPR022742 Serine aminopeptidase, S33 YP_3027 645e3fffa9cae717d72aac203fd0f4df 347 Gene3D G3DSA:1.10.220.30 106 208 9.6E-22 T 14-10-2018 YP_3027 645e3fffa9cae717d72aac203fd0f4df 347 SUPERFAMILY SSF48029 23 123 1.01E-15 T 14-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical YP_3027 645e3fffa9cae717d72aac203fd0f4df 347 Pfam PF14842 FliG N-terminal domain 23 117 4.5E-20 T 14-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain YP_3027 645e3fffa9cae717d72aac203fd0f4df 347 PRINTS PR00954 Flagellar motor switch protein FliG signature 262 282 2.1E-18 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YP_3027 645e3fffa9cae717d72aac203fd0f4df 347 PRINTS PR00954 Flagellar motor switch protein FliG signature 50 76 2.1E-18 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YP_3027 645e3fffa9cae717d72aac203fd0f4df 347 PRINTS PR00954 Flagellar motor switch protein FliG signature 21 37 2.1E-18 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YP_3027 645e3fffa9cae717d72aac203fd0f4df 347 PRINTS PR00954 Flagellar motor switch protein FliG signature 130 153 2.1E-18 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YP_3027 645e3fffa9cae717d72aac203fd0f4df 347 PRINTS PR00954 Flagellar motor switch protein FliG signature 286 312 2.1E-18 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YP_3027 645e3fffa9cae717d72aac203fd0f4df 347 PRINTS PR00954 Flagellar motor switch protein FliG signature 240 260 2.1E-18 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YP_3027 645e3fffa9cae717d72aac203fd0f4df 347 Gene3D G3DSA:1.10.220.30 211 344 3.9E-25 T 14-10-2018 YP_3027 645e3fffa9cae717d72aac203fd0f4df 347 SUPERFAMILY SSF48029 131 338 5.23E-50 T 14-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical YP_3027 645e3fffa9cae717d72aac203fd0f4df 347 Pfam PF01706 FliG C-terminal domain 232 337 3.3E-25 T 14-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal YP_3027 645e3fffa9cae717d72aac203fd0f4df 347 Gene3D G3DSA:1.10.220.30 15 102 3.0E-14 T 14-10-2018 YP_3027 645e3fffa9cae717d72aac203fd0f4df 347 Pfam PF14841 FliG middle domain 133 199 1.2E-20 T 14-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain YP_2817 7c7f860f56c3d256c61f8b4c2a65ef67 281 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 281 164.901 T 14-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 YP_2817 7c7f860f56c3d256c61f8b4c2a65ef67 281 SUPERFAMILY SSF55620 185 266 6.52E-10 T 14-10-2018 YP_2817 7c7f860f56c3d256c61f8b4c2a65ef67 281 Pfam PF14489 QueF-like protein 195 269 1.1E-27 T 14-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 YP_2817 7c7f860f56c3d256c61f8b4c2a65ef67 281 PIRSF PIRSF004750 6 281 1.2E-124 T 14-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 YP_2817 7c7f860f56c3d256c61f8b4c2a65ef67 281 Gene3D G3DSA:3.30.1130.10 21 139 9.7E-43 T 14-10-2018 YP_2817 7c7f860f56c3d256c61f8b4c2a65ef67 281 TIGRFAM TIGR03138 QueF: queuine synthase 10 281 2.4E-126 T 14-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 YP_2817 7c7f860f56c3d256c61f8b4c2a65ef67 281 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 21 131 8.4E-47 T 14-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 YP_2817 7c7f860f56c3d256c61f8b4c2a65ef67 281 Gene3D G3DSA:3.30.1130.10 144 281 2.9E-60 T 14-10-2018 YP_2148 26fc107a0fedc0f5116b765514bcf27b 271 SMART SM00382 39 228 2.6E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2148 26fc107a0fedc0f5116b765514bcf27b 271 SUPERFAMILY SSF52540 5 249 9.82E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2148 26fc107a0fedc0f5116b765514bcf27b 271 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2148 26fc107a0fedc0f5116b765514bcf27b 271 Pfam PF00005 ABC transporter 31 178 3.7E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2148 26fc107a0fedc0f5116b765514bcf27b 271 Gene3D G3DSA:3.40.50.300 3 268 3.9E-74 T 14-10-2018 YP_0137 1aca0782781533b1021503070b6aedf5 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 2.2E-22 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_0137 1aca0782781533b1021503070b6aedf5 239 SUPERFAMILY SSF52172 3 126 1.17E-41 T 14-10-2018 IPR011006 CheY-like superfamily YP_0137 1aca0782781533b1021503070b6aedf5 239 SUPERFAMILY SSF46894 132 234 2.3E-26 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_0137 1aca0782781533b1021503070b6aedf5 239 Gene3D G3DSA:1.10.10.10 130 239 1.5E-39 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0137 1aca0782781533b1021503070b6aedf5 239 SMART SM00862 156 232 1.7E-23 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_0137 1aca0782781533b1021503070b6aedf5 239 Gene3D G3DSA:3.40.50.2300 1 126 3.2E-40 T 14-10-2018 YP_0137 1aca0782781533b1021503070b6aedf5 239 SMART SM00448 5 116 1.2E-44 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0137 1aca0782781533b1021503070b6aedf5 239 Pfam PF00072 Response regulator receiver domain 7 117 1.3E-29 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0175 3f487635ead1106145cce64aa8b7d947 135 SUPERFAMILY SSF82784 1 131 4.06E-42 T 14-10-2018 IPR036102 OsmC/Ohr superfamily YP_0175 3f487635ead1106145cce64aa8b7d947 135 Gene3D G3DSA:3.30.300.20 35 133 1.3E-30 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta YP_0175 3f487635ead1106145cce64aa8b7d947 135 Pfam PF02566 OsmC-like protein 30 127 6.6E-19 T 14-10-2018 IPR003718 OsmC/Ohr family YP_0175 3f487635ead1106145cce64aa8b7d947 135 Gene3D G3DSA:2.20.25.10 1 34 4.4E-22 T 14-10-2018 YP_1810 e302f63f31ce415d7c3795bc9570173a 131 Pfam PF00072 Response regulator receiver domain 11 122 1.0E-31 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1810 e302f63f31ce415d7c3795bc9570173a 131 Gene3D G3DSA:3.40.50.2300 4 131 1.6E-38 T 14-10-2018 YP_1810 e302f63f31ce415d7c3795bc9570173a 131 SMART SM00448 8 122 7.7E-35 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1810 e302f63f31ce415d7c3795bc9570173a 131 SUPERFAMILY SSF52172 7 127 1.99E-36 T 14-10-2018 IPR011006 CheY-like superfamily YP_1741 7e2db0f75c082e1bd5fc8273a705a9f1 465 PRINTS PR00173 Glutamate-aspartate symporter signature 29 49 1.4E-26 T 14-10-2018 YP_1741 7e2db0f75c082e1bd5fc8273a705a9f1 465 PRINTS PR00173 Glutamate-aspartate symporter signature 399 419 1.4E-26 T 14-10-2018 YP_1741 7e2db0f75c082e1bd5fc8273a705a9f1 465 PRINTS PR00173 Glutamate-aspartate symporter signature 107 132 1.4E-26 T 14-10-2018 YP_1741 7e2db0f75c082e1bd5fc8273a705a9f1 465 PRINTS PR00173 Glutamate-aspartate symporter signature 77 97 1.4E-26 T 14-10-2018 YP_1741 7e2db0f75c082e1bd5fc8273a705a9f1 465 PRINTS PR00173 Glutamate-aspartate symporter signature 372 391 1.4E-26 T 14-10-2018 YP_1741 7e2db0f75c082e1bd5fc8273a705a9f1 465 PRINTS PR00173 Glutamate-aspartate symporter signature 184 206 1.4E-26 T 14-10-2018 YP_1741 7e2db0f75c082e1bd5fc8273a705a9f1 465 Gene3D G3DSA:1.10.3860.10 21 461 5.4E-109 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 YP_1741 7e2db0f75c082e1bd5fc8273a705a9f1 465 SUPERFAMILY SSF118215 31 444 1.96E-98 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 YP_1741 7e2db0f75c082e1bd5fc8273a705a9f1 465 Pfam PF00375 Sodium:dicarboxylate symporter family 31 444 3.2E-105 T 14-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 YP_0590 fc8b78415808bf4c0d8dc16b979cc7e6 89 Pfam PF00312 Ribosomal protein S15 8 88 3.3E-37 T 14-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0590 fc8b78415808bf4c0d8dc16b979cc7e6 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.924 T 14-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0590 fc8b78415808bf4c0d8dc16b979cc7e6 89 SUPERFAMILY SSF47060 3 89 2.71E-34 T 14-10-2018 IPR009068 S15/NS1, RNA-binding YP_0590 fc8b78415808bf4c0d8dc16b979cc7e6 89 Gene3D G3DSA:1.10.287.10 2 89 3.7E-37 T 14-10-2018 YP_0590 fc8b78415808bf4c0d8dc16b979cc7e6 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 3.1E-39 T 14-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0590 fc8b78415808bf4c0d8dc16b979cc7e6 89 SMART SM01387 8 88 1.2E-50 T 14-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0590 fc8b78415808bf4c0d8dc16b979cc7e6 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 9.0E-40 T 14-10-2018 YP_0590 fc8b78415808bf4c0d8dc16b979cc7e6 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 14-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_pPCP03 55e98d17143400559b9f0352493a3f47 64 Pfam PF01815 Rop protein 1 57 5.4E-33 T 14-10-2018 IPR000769 Regulatory protein Rop YP_pPCP03 55e98d17143400559b9f0352493a3f47 64 PRINTS PR00835 Regulatory protein Rop signature 42 54 7.2E-18 T 14-10-2018 IPR000769 Regulatory protein Rop YP_pPCP03 55e98d17143400559b9f0352493a3f47 64 PRINTS PR00835 Regulatory protein Rop signature 2 14 7.2E-18 T 14-10-2018 IPR000769 Regulatory protein Rop YP_pPCP03 55e98d17143400559b9f0352493a3f47 64 PRINTS PR00835 Regulatory protein Rop signature 30 42 7.2E-18 T 14-10-2018 IPR000769 Regulatory protein Rop YP_pPCP03 55e98d17143400559b9f0352493a3f47 64 PRINTS PR00835 Regulatory protein Rop signature 14 29 7.2E-18 T 14-10-2018 IPR000769 Regulatory protein Rop YP_pPCP03 55e98d17143400559b9f0352493a3f47 64 Gene3D G3DSA:1.10.287.230 1 62 8.3E-33 T 14-10-2018 YP_pPCP03 55e98d17143400559b9f0352493a3f47 64 SUPERFAMILY SSF47380 2 61 7.32E-27 T 14-10-2018 IPR035962 Rop-like superfamily YP_pPCP03 55e98d17143400559b9f0352493a3f47 64 PIRSF PIRSF003229 1 64 2.2E-31 T 14-10-2018 IPR000769 Regulatory protein Rop YP_pPCP03 55e98d17143400559b9f0352493a3f47 64 ProDom PD012167 PLASMID ROM MODULATOR RNA RNAI INHIBITION I ONE TRANSCRIPTION REGULATORY 1 46 4.0E-9 T 14-10-2018 IPR000769 Regulatory protein Rop YP_pCD15 f4043a9b1c27fd089a0716881c283f79 178 Gene3D G3DSA:3.30.420.10 8 162 1.2E-19 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_pCD15 f4043a9b1c27fd089a0716881c283f79 178 Pfam PF13683 Integrase core domain 100 165 8.8E-30 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_pCD15 f4043a9b1c27fd089a0716881c283f79 178 SUPERFAMILY SSF53098 9 172 9.99E-39 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1306 58774cf9ab7f002db0eb4c47bed7e082 414 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 16 395 6.0E-148 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_1306 58774cf9ab7f002db0eb4c47bed7e082 414 PIRSF PIRSF006060 13 306 2.8E-11 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_1306 58774cf9ab7f002db0eb4c47bed7e082 414 PIRSF PIRSF006060 307 413 7.5 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_1306 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 46 65 3.2E-98 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_1306 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 293 312 3.2E-98 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_1306 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 327 345 3.2E-98 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_1306 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 155 175 3.2E-98 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_1306 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 19 42 3.2E-98 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_1306 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 193 215 3.2E-98 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_1306 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 232 251 3.2E-98 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_1306 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 91 111 3.2E-98 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_1306 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 348 367 3.2E-98 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YP_1306 58774cf9ab7f002db0eb4c47bed7e082 414 Gene3D G3DSA:1.20.1740.10 11 414 2.5E-6 T 14-10-2018 YP_1306 58774cf9ab7f002db0eb4c47bed7e082 414 Pfam PF03222 Tryptophan/tyrosine permease family 11 402 1.0E-144 T 14-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 YP_0741 de47de6702c758ff4cb0e98670f836db 133 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 43 125 4.1E-32 T 14-10-2018 IPR003849 Preprotein translocase YajC YP_0741 de47de6702c758ff4cb0e98670f836db 133 PRINTS PR01853 Bacterial YajC preprotein translocase signature 44 64 2.1E-16 T 14-10-2018 IPR003849 Preprotein translocase YajC YP_0741 de47de6702c758ff4cb0e98670f836db 133 PRINTS PR01853 Bacterial YajC preprotein translocase signature 82 100 2.1E-16 T 14-10-2018 IPR003849 Preprotein translocase YajC YP_0741 de47de6702c758ff4cb0e98670f836db 133 Pfam PF02699 Preprotein translocase subunit 46 122 3.2E-26 T 14-10-2018 IPR003849 Preprotein translocase YajC YP_0741 de47de6702c758ff4cb0e98670f836db 133 SMART SM01323 42 125 1.7E-37 T 14-10-2018 IPR003849 Preprotein translocase YajC YP_2295 6d1ce2fb5143cba8ab871caf1172f722 291 Gene3D G3DSA:1.10.3720.10 49 289 3.8E-49 T 14-10-2018 IPR035906 MetI-like superfamily YP_2295 6d1ce2fb5143cba8ab871caf1172f722 291 SUPERFAMILY SSF161098 53 277 2.73E-44 T 14-10-2018 IPR035906 MetI-like superfamily YP_2295 6d1ce2fb5143cba8ab871caf1172f722 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 70 278 2.8E-10 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_0283 a05082bb1bcf5b20a72ace6931e4f4f6 284 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 39.814 T 14-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 YP_0283 a05082bb1bcf5b20a72ace6931e4f4f6 284 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 281 5.1E-110 T 14-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 YP_0283 a05082bb1bcf5b20a72ace6931e4f4f6 284 Gene3D G3DSA:3.40.50.620 1 179 1.0E-79 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0283 a05082bb1bcf5b20a72ace6931e4f4f6 284 Gene3D G3DSA:3.30.1300.10 180 283 1.2E-30 T 14-10-2018 YP_0283 a05082bb1bcf5b20a72ace6931e4f4f6 284 SUPERFAMILY SSF52374 1 281 1.66E-105 T 14-10-2018 YP_0283 a05082bb1bcf5b20a72ace6931e4f4f6 284 Pfam PF02569 Pantoate-beta-alanine ligase 3 278 5.1E-101 T 14-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 YP_2278 f6167df548c648db4610eaaed207de1e 452 Pfam PF00083 Sugar (and other) transporter 57 435 8.5E-56 T 14-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 YP_2278 f6167df548c648db4610eaaed207de1e 452 Gene3D G3DSA:1.10.286.90 201 235 1.9E-6 T 14-10-2018 YP_2278 f6167df548c648db4610eaaed207de1e 452 ProSitePatterns PS00217 Sugar transport proteins signature 2. 119 144 - T 14-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 YP_2278 f6167df548c648db4610eaaed207de1e 452 SUPERFAMILY SSF103473 12 433 9.68E-68 T 14-10-2018 IPR036259 MFS transporter superfamily YP_3427 53db80e47d6aebcbeb3ab1d9138c4754 375 TIGRFAM TIGR01761 thiaz-red: thiazolinyl imide reductase 3 355 8.0E-171 T 14-10-2018 IPR010091 Thiazolinyl imide reductase YP_3427 53db80e47d6aebcbeb3ab1d9138c4754 375 Gene3D G3DSA:3.30.360.10 126 300 1.6E-121 T 14-10-2018 YP_3427 53db80e47d6aebcbeb3ab1d9138c4754 375 Gene3D G3DSA:3.40.50.720 6 346 1.6E-121 T 14-10-2018 YP_3427 53db80e47d6aebcbeb3ab1d9138c4754 375 SUPERFAMILY SSF51735 6 140 5.15E-15 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3427 53db80e47d6aebcbeb3ab1d9138c4754 375 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 122 6.6E-21 T 14-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 YP_3427 53db80e47d6aebcbeb3ab1d9138c4754 375 PIRSF PIRSF017494 1 369 7.1E-144 T 14-10-2018 IPR010091 Thiazolinyl imide reductase YP_0433 3f67f7a79117e38d1d31d05ff6d70eca 393 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 200 214 - T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YP_0433 3f67f7a79117e38d1d31d05ff6d70eca 393 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 13 386 2.9E-94 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YP_0433 3f67f7a79117e38d1d31d05ff6d70eca 393 SUPERFAMILY SSF53383 45 386 4.34E-82 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_0433 3f67f7a79117e38d1d31d05ff6d70eca 393 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 13 388 2.4E-134 T 14-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 YP_0433 3f67f7a79117e38d1d31d05ff6d70eca 393 Gene3D G3DSA:3.40.640.10 8 256 6.2E-62 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_0433 3f67f7a79117e38d1d31d05ff6d70eca 393 PIRSF PIRSF001434 1 390 2.9E-106 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YP_0433 3f67f7a79117e38d1d31d05ff6d70eca 393 Gene3D G3DSA:3.90.1150.10 257 390 3.7E-35 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_0015 a9b974e1e7afc839dc87cdf4f8cd8d10 89 Pfam PF06288 Protein of unknown function (DUF1040) 1 86 8.4E-46 T 14-10-2018 IPR009383 Protein of unknown function DUF1040 YP_0015 a9b974e1e7afc839dc87cdf4f8cd8d10 89 Gene3D G3DSA:1.10.1580.20 1 89 3.4E-46 T 14-10-2018 IPR038134 YihD-like superfamily YP_0015 a9b974e1e7afc839dc87cdf4f8cd8d10 89 ProDom PD029038 YIHD CYTOPLASMIC ENZYME Y3814 GLYCOGEN YPO0013A HI0845 DIRECT ORF1 UNCHARACTERIZED 1 87 6.0E-46 T 14-10-2018 IPR009383 Protein of unknown function DUF1040 YP_1841 337a682c39559e7759db4c7d6b9075c5 316 SUPERFAMILY SSF51182 27 204 6.52E-9 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily YP_2875 83eb5779d3616cffcfc04fa29914974e 264 Pfam PF00303 Thymidylate synthase 2 264 9.0E-126 T 14-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YP_2875 83eb5779d3616cffcfc04fa29914974e 264 SUPERFAMILY SSF55831 1 264 4.84E-130 T 14-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YP_2875 83eb5779d3616cffcfc04fa29914974e 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 39.711 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YP_2875 83eb5779d3616cffcfc04fa29914974e 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 4.5E-92 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YP_2875 83eb5779d3616cffcfc04fa29914974e 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 5.1E-42 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YP_2875 83eb5779d3616cffcfc04fa29914974e 264 Gene3D G3DSA:3.30.572.10 1 264 1.5E-134 T 14-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YP_2875 83eb5779d3616cffcfc04fa29914974e 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 14-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YP_2875 83eb5779d3616cffcfc04fa29914974e 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 1.7E-47 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YP_2875 83eb5779d3616cffcfc04fa29914974e 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 1.7E-47 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YP_2875 83eb5779d3616cffcfc04fa29914974e 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 1.7E-47 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YP_2875 83eb5779d3616cffcfc04fa29914974e 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 1.7E-47 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YP_2875 83eb5779d3616cffcfc04fa29914974e 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 1.7E-47 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YP_0235 8ffc9ae31aec777d1f366a4b667dbe23 66 Pfam PF03889 Domain of unknown function 9 45 1.2E-22 T 14-10-2018 IPR005589 Alternative ribosome-rescue factor A GO:0072344 YP_0226 59daddab34c70f927432b384a57d2e31 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 14-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0226 59daddab34c70f927432b384a57d2e31 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 6.4E-31 T 14-10-2018 IPR021131 Ribosomal protein L18e/L15P YP_0226 59daddab34c70f927432b384a57d2e31 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 9.0E-52 T 14-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0226 59daddab34c70f927432b384a57d2e31 144 Gene3D G3DSA:3.100.10.10 70 144 1.4E-11 T 14-10-2018 YP_0226 59daddab34c70f927432b384a57d2e31 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 144 19.307 T 14-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 YP_0226 59daddab34c70f927432b384a57d2e31 144 SUPERFAMILY SSF52080 4 143 7.72E-47 T 14-10-2018 IPR036227 Ribosomal L18e/L15P superfamily YP_3096 5f800380169d4a4d6c15ab301d5d2cb1 246 Gene3D G3DSA:3.30.2170.10 12 227 8.7E-81 T 14-10-2018 YP_3096 5f800380169d4a4d6c15ab301d5d2cb1 246 Hamap MF_00801 Endonuclease V [nfi]. 12 229 33.359 T 14-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 YP_3096 5f800380169d4a4d6c15ab301d5d2cb1 246 Pfam PF04493 Endonuclease V 27 219 1.3E-71 T 14-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 YP_1232 424828927a78b70b5d9706f068f6e46f 315 Pfam PF04393 Protein of unknown function (DUF535) 33 311 4.2E-103 T 14-10-2018 IPR007488 Protein of unknown function DUF535 YP_2796 864e447431bb390555f499253f282c31 340 Gene3D G3DSA:3.40.1390.10 1 99 4.0E-36 T 14-10-2018 YP_2796 864e447431bb390555f499253f282c31 340 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 9 326 35.357 T 14-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 YP_2796 864e447431bb390555f499253f282c31 340 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 88 1.7E-22 T 14-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 YP_2796 864e447431bb390555f499253f282c31 340 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 8 329 4.1E-124 T 14-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 YP_2796 864e447431bb390555f499253f282c31 340 Gene3D G3DSA:2.160.10.10 100 309 4.8E-67 T 14-10-2018 YP_2796 864e447431bb390555f499253f282c31 340 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 225 253 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YP_2796 864e447431bb390555f499253f282c31 340 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 130 158 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YP_2796 864e447431bb390555f499253f282c31 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 144 1.5E-8 T 14-10-2018 IPR001451 Hexapeptide repeat YP_2796 864e447431bb390555f499253f282c31 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 145 179 3.8E-8 T 14-10-2018 IPR001451 Hexapeptide repeat YP_2796 864e447431bb390555f499253f282c31 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 222 255 6.8E-7 T 14-10-2018 IPR001451 Hexapeptide repeat YP_2796 864e447431bb390555f499253f282c31 340 SUPERFAMILY SSF51161 33 316 1.11E-85 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily YP_2401 53850cfd20d64cfbee9f2281ab47a358 261 Gene3D G3DSA:2.60.120.10 9 92 5.6E-9 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_2401 53850cfd20d64cfbee9f2281ab47a358 261 Pfam PF12833 Helix-turn-helix domain 178 255 6.7E-22 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_2401 53850cfd20d64cfbee9f2281ab47a358 261 SMART SM00342 172 254 2.2E-21 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_2401 53850cfd20d64cfbee9f2281ab47a358 261 Gene3D G3DSA:1.10.10.60 152 258 1.5E-21 T 14-10-2018 YP_2401 53850cfd20d64cfbee9f2281ab47a358 261 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 223 238 3.5E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_2401 53850cfd20d64cfbee9f2281ab47a358 261 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 238 254 3.5E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_2401 53850cfd20d64cfbee9f2281ab47a358 261 Pfam PF02311 AraC-like ligand binding domain 25 134 8.5E-9 T 14-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 YP_2401 53850cfd20d64cfbee9f2281ab47a358 261 SUPERFAMILY SSF51182 16 154 6.23E-15 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily YP_2401 53850cfd20d64cfbee9f2281ab47a358 261 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 207 250 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YP_2401 53850cfd20d64cfbee9f2281ab47a358 261 SUPERFAMILY SSF46689 208 256 3.36E-9 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2813 07ed166dbc220093cd47280be381b8ae 257 Pfam PF00849 RNA pseudouridylate synthase 10 170 1.2E-32 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_2813 07ed166dbc220093cd47280be381b8ae 257 Gene3D G3DSA:3.30.2350.10 3 235 3.0E-61 T 14-10-2018 YP_2813 07ed166dbc220093cd47280be381b8ae 257 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 50 64 - T 14-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_2813 07ed166dbc220093cd47280be381b8ae 257 SUPERFAMILY SSF55120 2 237 2.56E-62 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YP_0257 31305419ed15083f48e5538189c5b4fa 399 Gene3D G3DSA:1.20.81.30 52 166 2.8E-28 T 14-10-2018 YP_0257 31305419ed15083f48e5538189c5b4fa 399 PRINTS PR00812 Bacterial general secretion pathway protein F signature 159 187 9.6E-19 T 14-10-2018 IPR003004 GspF/PilC family YP_0257 31305419ed15083f48e5538189c5b4fa 399 PRINTS PR00812 Bacterial general secretion pathway protein F signature 60 72 9.6E-19 T 14-10-2018 IPR003004 GspF/PilC family YP_0257 31305419ed15083f48e5538189c5b4fa 399 PRINTS PR00812 Bacterial general secretion pathway protein F signature 379 398 9.6E-19 T 14-10-2018 IPR003004 GspF/PilC family YP_0257 31305419ed15083f48e5538189c5b4fa 399 PRINTS PR00812 Bacterial general secretion pathway protein F signature 363 377 9.6E-19 T 14-10-2018 IPR003004 GspF/PilC family YP_0257 31305419ed15083f48e5538189c5b4fa 399 Gene3D G3DSA:1.20.81.30 252 362 6.8E-20 T 14-10-2018 YP_0257 31305419ed15083f48e5538189c5b4fa 399 Pfam PF00482 Type II secretion system (T2SS), protein F 270 390 2.6E-26 T 14-10-2018 IPR018076 Type II secretion system F domain YP_0257 31305419ed15083f48e5538189c5b4fa 399 Pfam PF00482 Type II secretion system (T2SS), protein F 65 187 1.5E-29 T 14-10-2018 IPR018076 Type II secretion system F domain YP_0257 31305419ed15083f48e5538189c5b4fa 399 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 159 187 - T 14-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 YP_0841 c742e17a8d0fdf4bde1691e6c777e3ca 304 Gene3D G3DSA:3.30.479.30 46 178 4.4E-42 T 14-10-2018 YP_0841 c742e17a8d0fdf4bde1691e6c777e3ca 304 ProSitePatterns PS01270 Band 7 protein family signature. 132 160 - T 14-10-2018 IPR018080 Band 7/stomatin-like, conserved site YP_0841 c742e17a8d0fdf4bde1691e6c777e3ca 304 SMART SM00244 18 176 8.0E-59 T 14-10-2018 IPR001107 Band 7 domain YP_0841 c742e17a8d0fdf4bde1691e6c777e3ca 304 SUPERFAMILY SSF117892 49 183 1.11E-40 T 14-10-2018 IPR036013 Band 7/SPFH domain superfamily YP_0841 c742e17a8d0fdf4bde1691e6c777e3ca 304 PRINTS PR00721 Stomatin signature 128 151 2.0E-27 T 14-10-2018 IPR001972 Stomatin family GO:0016020 YP_0841 c742e17a8d0fdf4bde1691e6c777e3ca 304 PRINTS PR00721 Stomatin signature 171 192 2.0E-27 T 14-10-2018 IPR001972 Stomatin family GO:0016020 YP_0841 c742e17a8d0fdf4bde1691e6c777e3ca 304 PRINTS PR00721 Stomatin signature 108 125 2.0E-27 T 14-10-2018 IPR001972 Stomatin family GO:0016020 YP_0841 c742e17a8d0fdf4bde1691e6c777e3ca 304 PRINTS PR00721 Stomatin signature 152 170 2.0E-27 T 14-10-2018 IPR001972 Stomatin family GO:0016020 YP_0841 c742e17a8d0fdf4bde1691e6c777e3ca 304 PRINTS PR00721 Stomatin signature 73 94 2.0E-27 T 14-10-2018 IPR001972 Stomatin family GO:0016020 YP_0841 c742e17a8d0fdf4bde1691e6c777e3ca 304 Pfam PF01145 SPFH domain / Band 7 family 22 200 2.5E-31 T 14-10-2018 IPR001107 Band 7 domain YP_0668 adb953fe1873822e20638bfedd265e8c 257 Pfam PF03591 AzlC protein 27 167 1.8E-38 T 14-10-2018 IPR011606 Branched-chain amino acid transport, permease YP_1046 6e0750c5470509e9b55745bc6fc86eab 115 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 113 1.6E-35 T 14-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 YP_1046 6e0750c5470509e9b55745bc6fc86eab 115 SUPERFAMILY SSF81343 5 114 1.24E-28 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_1046 6e0750c5470509e9b55745bc6fc86eab 115 PIRSF PIRSF000169 1 115 5.2E-41 T 14-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 YP_1046 6e0750c5470509e9b55745bc6fc86eab 115 Gene3D G3DSA:1.20.1300.10 1 115 3.9E-30 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_pMT032 3b0d4eba370f53620cb9bb83476d87d5 232 SUPERFAMILY SSF110849 11 145 1.19E-32 T 14-10-2018 IPR036086 ParB/Sulfiredoxin superfamily YP_pMT032 3b0d4eba370f53620cb9bb83476d87d5 232 Gene3D G3DSA:3.90.1530.30 29 87 1.3E-10 T 14-10-2018 YP_pMT032 3b0d4eba370f53620cb9bb83476d87d5 232 SMART SM00470 14 104 3.5E-22 T 14-10-2018 IPR003115 ParB/Sulfiredoxin YP_pMT032 3b0d4eba370f53620cb9bb83476d87d5 232 Pfam PF02195 ParB-like nuclease domain 15 103 9.8E-19 T 14-10-2018 IPR003115 ParB/Sulfiredoxin YP_2737 6d2aa3dd84319cebaf87bdc154b9a9db 515 SMART SM00116 124 172 7.2E-9 T 14-10-2018 IPR000644 CBS domain YP_2737 6d2aa3dd84319cebaf87bdc154b9a9db 515 SMART SM00116 186 234 4.2E-9 T 14-10-2018 IPR000644 CBS domain YP_2737 6d2aa3dd84319cebaf87bdc154b9a9db 515 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 36 501 1.5E-159 T 14-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 YP_2737 6d2aa3dd84319cebaf87bdc154b9a9db 515 SUPERFAMILY SSF51412 29 505 1.05E-123 T 14-10-2018 YP_2737 6d2aa3dd84319cebaf87bdc154b9a9db 515 Pfam PF00571 CBS domain 123 168 1.2E-7 T 14-10-2018 IPR000644 CBS domain YP_2737 6d2aa3dd84319cebaf87bdc154b9a9db 515 Pfam PF00571 CBS domain 177 230 3.4E-6 T 14-10-2018 IPR000644 CBS domain YP_2737 6d2aa3dd84319cebaf87bdc154b9a9db 515 SUPERFAMILY SSF54631 123 231 3.54E-25 T 14-10-2018 YP_2737 6d2aa3dd84319cebaf87bdc154b9a9db 515 SMART SM01240 35 501 0.0 T 14-10-2018 YP_2737 6d2aa3dd84319cebaf87bdc154b9a9db 515 Gene3D G3DSA:3.20.20.70 29 514 5.9E-206 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_2737 6d2aa3dd84319cebaf87bdc154b9a9db 515 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 36 482 2.9E-195 T 14-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 YP_2737 6d2aa3dd84319cebaf87bdc154b9a9db 515 PIRSF PIRSF000130 28 515 1.9E-195 T 14-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 YP_2737 6d2aa3dd84319cebaf87bdc154b9a9db 515 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 36 514 84.055 T 14-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 YP_2737 6d2aa3dd84319cebaf87bdc154b9a9db 515 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 323 335 - T 14-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 YP_3085 ce25650ab514050a9886fba0cb58b245 280 Gene3D G3DSA:3.30.450.40 99 278 3.2E-66 T 14-10-2018 IPR029016 GAF-like domain superfamily YP_3085 ce25650ab514050a9886fba0cb58b245 280 SUPERFAMILY SSF55781 98 274 3.99E-50 T 14-10-2018 YP_3085 ce25650ab514050a9886fba0cb58b245 280 Gene3D G3DSA:1.10.10.10 11 88 5.3E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3085 ce25650ab514050a9886fba0cb58b245 280 SUPERFAMILY SSF46785 27 100 6.83E-15 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3085 ce25650ab514050a9886fba0cb58b245 280 Pfam PF09339 IclR helix-turn-helix domain 29 79 4.2E-18 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 YP_3085 ce25650ab514050a9886fba0cb58b245 280 SMART SM00346 27 117 6.5E-34 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 YP_3085 ce25650ab514050a9886fba0cb58b245 280 Pfam PF01614 Bacterial transcriptional regulator 148 271 1.5E-39 T 14-10-2018 IPR014757 Transcription regulator IclR, C-terminal YP_1826 b4860953b2cacb2ff2cbbf8aa9eaf32e 658 SUPERFAMILY SSF56322 151 650 3.53E-47 T 14-10-2018 IPR005801 ADC synthase GO:0009058 YP_1826 b4860953b2cacb2ff2cbbf8aa9eaf32e 658 Gene3D G3DSA:3.60.120.10 160 347 9.0E-7 T 14-10-2018 IPR005801 ADC synthase GO:0009058 YP_1826 b4860953b2cacb2ff2cbbf8aa9eaf32e 658 Gene3D G3DSA:3.60.120.10 348 654 5.4E-47 T 14-10-2018 IPR005801 ADC synthase GO:0009058 YP_1826 b4860953b2cacb2ff2cbbf8aa9eaf32e 658 Pfam PF00425 chorismate binding enzyme 394 640 7.2E-42 T 14-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal YP_1007 ba592b4a440304ac04ac4fa1a673b420 267 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 20 266 29.225 T 14-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 YP_1007 ba592b4a440304ac04ac4fa1a673b420 267 Gene3D G3DSA:3.40.50.150 27 215 1.0E-34 T 14-10-2018 YP_1007 ba592b4a440304ac04ac4fa1a673b420 267 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 28 266 1.1E-65 T 14-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 YP_1007 ba592b4a440304ac04ac4fa1a673b420 267 SUPERFAMILY SSF53335 26 261 8.59E-38 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1007 ba592b4a440304ac04ac4fa1a673b420 267 Pfam PF08241 Methyltransferase domain 63 154 1.4E-24 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 YP_2194 2bdb8e07513917e7adda80d00cf9383b 1018 Pfam PF01565 FAD binding domain 52 192 1.0E-34 T 14-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 YP_2194 2bdb8e07513917e7adda80d00cf9383b 1018 Pfam PF13183 4Fe-4S dicluster domain 577 688 2.0E-12 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2194 2bdb8e07513917e7adda80d00cf9383b 1018 Pfam PF02913 FAD linked oxidases, C-terminal domain 281 539 1.2E-61 T 14-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 YP_2194 2bdb8e07513917e7adda80d00cf9383b 1018 Gene3D G3DSA:3.30.465.40 240 301 1.5E-5 T 14-10-2018 YP_2194 2bdb8e07513917e7adda80d00cf9383b 1018 Gene3D G3DSA:3.30.465.40 18 206 1.0E-43 T 14-10-2018 YP_2194 2bdb8e07513917e7adda80d00cf9383b 1018 SUPERFAMILY SSF55103 258 542 1.8E-53 T 14-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 YP_2194 2bdb8e07513917e7adda80d00cf9383b 1018 SUPERFAMILY SSF56176 18 282 3.43E-52 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YP_2194 2bdb8e07513917e7adda80d00cf9383b 1018 SUPERFAMILY SSF46548 516 691 1.92E-8 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YP_2194 2bdb8e07513917e7adda80d00cf9383b 1018 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 674 685 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_0176 a49dc447456fc4accdbb24c44f3291db 143 Pfam PF06836 Protein of unknown function (DUF1240) 50 143 2.7E-33 T 14-10-2018 IPR010665 Protein of unknown function DUF1240 YP_0647 6f58d250409d5780ccf53a04c313785d 670 Pfam PF07510 Protein of unknown function (DUF1524) 533 606 2.0E-7 T 14-10-2018 IPR011089 Domain of unknown function DUF1524 YP_0647 6f58d250409d5780ccf53a04c313785d 670 Pfam PF03235 Protein of unknown function DUF262 58 275 4.3E-32 T 14-10-2018 IPR004919 Domain of unknown function DUF262 YP_2644 a7e9bbed5997e73238cbce1ac29bcfcb 290 Hamap MF_01234 N-acetylmannosamine kinase [nanK]. 2 290 49.236 T 14-10-2018 IPR023945 N-acetylmannosamine kinase, bacterial GO:0005524|GO:0008270|GO:0009384|GO:0019262 KEGG: 00520+2.7.1.60|MetaCyc: PWY-6138 YP_2644 a7e9bbed5997e73238cbce1ac29bcfcb 290 Pfam PF00480 ROK family 5 288 3.9E-70 T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YP_2644 a7e9bbed5997e73238cbce1ac29bcfcb 290 Gene3D G3DSA:3.30.420.40 119 270 8.4E-79 T 14-10-2018 YP_2644 a7e9bbed5997e73238cbce1ac29bcfcb 290 ProSitePatterns PS01125 ROK family signature. 129 156 - T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YP_2644 a7e9bbed5997e73238cbce1ac29bcfcb 290 SUPERFAMILY SSF53067 3 288 6.72E-53 T 14-10-2018 YP_2644 a7e9bbed5997e73238cbce1ac29bcfcb 290 Gene3D G3DSA:3.30.420.40 6 283 8.4E-79 T 14-10-2018 YP_0213 e4854c3184f2f6bef7a38facf4b9e29c 232 SUPERFAMILY SSF54814 2 106 1.91E-37 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 YP_0213 e4854c3184f2f6bef7a38facf4b9e29c 232 Gene3D G3DSA:3.30.1140.32 108 208 3.9E-46 T 14-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0213 e4854c3184f2f6bef7a38facf4b9e29c 232 SMART SM00322 60 125 1.6E-6 T 14-10-2018 IPR004087 K Homology domain GO:0003676 YP_0213 e4854c3184f2f6bef7a38facf4b9e29c 232 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 14-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0213 e4854c3184f2f6bef7a38facf4b9e29c 232 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.264 T 14-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 YP_0213 e4854c3184f2f6bef7a38facf4b9e29c 232 SUPERFAMILY SSF54821 108 206 6.93E-41 T 14-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0213 e4854c3184f2f6bef7a38facf4b9e29c 232 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 2.0E-41 T 14-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0213 e4854c3184f2f6bef7a38facf4b9e29c 232 Gene3D G3DSA:3.30.300.20 17 107 1.3E-29 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta YP_0213 e4854c3184f2f6bef7a38facf4b9e29c 232 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 2.3E-100 T 14-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 YP_0213 e4854c3184f2f6bef7a38facf4b9e29c 232 Pfam PF07650 KH domain 38 111 8.9E-19 T 14-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_2424 9f046da5e9e1b7ae0ec532ecc7b033b1 188 Pfam PF08534 Redoxin 47 169 4.8E-24 T 14-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 YP_2424 9f046da5e9e1b7ae0ec532ecc7b033b1 188 SUPERFAMILY SSF52833 51 184 4.87E-38 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_2424 9f046da5e9e1b7ae0ec532ecc7b033b1 188 ProSitePatterns PS00194 Thioredoxin family active site. 77 95 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 YP_2424 9f046da5e9e1b7ae0ec532ecc7b033b1 188 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 11 183 6.1E-74 T 14-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 YP_2424 9f046da5e9e1b7ae0ec532ecc7b033b1 188 Gene3D G3DSA:3.40.30.10 26 186 9.1E-45 T 14-10-2018 YP_0975 b9b1fbd0d84556405d8c8d9169322a63 328 SUPERFAMILY SSF111369 179 325 2.48E-13 T 14-10-2018 YP_0975 b9b1fbd0d84556405d8c8d9169322a63 328 Gene3D G3DSA:1.10.287.470 179 206 1.3E-25 T 14-10-2018 YP_0975 b9b1fbd0d84556405d8c8d9169322a63 328 Hamap MF_01304 UPF0194 membrane protein YbhG [ybhG]. 2 328 52.752 T 14-10-2018 IPR022936 Uncharacterised protein family UPF0194, membrane protein YbhG YP_0975 b9b1fbd0d84556405d8c8d9169322a63 328 SUPERFAMILY SSF111369 41 102 7.19E-8 T 14-10-2018 YP_0975 b9b1fbd0d84556405d8c8d9169322a63 328 Gene3D G3DSA:2.40.50.100 43 77 8.4E-13 T 14-10-2018 YP_0975 b9b1fbd0d84556405d8c8d9169322a63 328 Gene3D G3DSA:2.40.50.100 207 241 1.3E-25 T 14-10-2018 YP_0975 b9b1fbd0d84556405d8c8d9169322a63 328 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 40 292 3.7E-17 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_0975 b9b1fbd0d84556405d8c8d9169322a63 328 Gene3D G3DSA:1.10.287.470 78 105 8.4E-13 T 14-10-2018 YP_0975 b9b1fbd0d84556405d8c8d9169322a63 328 Gene3D G3DSA:2.40.30.170 242 321 1.3E-25 T 14-10-2018 YP_0975 b9b1fbd0d84556405d8c8d9169322a63 328 Gene3D G3DSA:1.10.287.470 108 173 3.3E-9 T 14-10-2018 YP_0357 2618a8bc3739c9b619dc71dea4518318 504 SUPERFAMILY SSF52540 12 239 1.43E-55 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0357 2618a8bc3739c9b619dc71dea4518318 504 ProSitePatterns PS00211 ABC transporters family signature. 407 421 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0357 2618a8bc3739c9b619dc71dea4518318 504 SUPERFAMILY SSF52540 268 493 1.07E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0357 2618a8bc3739c9b619dc71dea4518318 504 Gene3D G3DSA:3.40.50.300 8 247 1.1E-56 T 14-10-2018 YP_0357 2618a8bc3739c9b619dc71dea4518318 504 Pfam PF00005 ABC transporter 29 180 7.0E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0357 2618a8bc3739c9b619dc71dea4518318 504 Gene3D G3DSA:3.40.50.300 251 503 2.0E-45 T 14-10-2018 YP_0357 2618a8bc3739c9b619dc71dea4518318 504 SMART SM00382 38 228 2.4E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0357 2618a8bc3739c9b619dc71dea4518318 504 SMART SM00382 288 483 0.072 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0357 2618a8bc3739c9b619dc71dea4518318 504 Pfam PF00005 ABC transporter 280 434 3.8E-23 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1795 b48e30d1c9413f8d9b789e25d221f952 433 Gene3D G3DSA:3.30.1330.60 106 293 2.8E-61 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_1795 b48e30d1c9413f8d9b789e25d221f952 433 SUPERFAMILY SSF103088 155 263 1.44E-18 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_1795 b48e30d1c9413f8d9b789e25d221f952 433 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 13 66 1.0E-18 T 14-10-2018 IPR025713 Motility protein B, N-terminal domain YP_1795 b48e30d1c9413f8d9b789e25d221f952 433 Pfam PF00691 OmpA family 159 253 3.6E-12 T 14-10-2018 IPR006665 OmpA-like domain YP_1424 8dbcade8dfeaf70d451bda3e212e61b0 346 SUPERFAMILY SSF81345 6 331 1.27E-69 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_1424 8dbcade8dfeaf70d451bda3e212e61b0 346 Gene3D G3DSA:1.10.3470.10 11 340 2.2E-82 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_1424 8dbcade8dfeaf70d451bda3e212e61b0 346 Pfam PF01032 FecCD transport family 23 334 5.9E-77 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YP_0750 1f1db598d4494f6f2a39094d59d20aa0 138 Pfam PF01029 NusB family 7 131 4.9E-37 T 14-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 YP_0750 1f1db598d4494f6f2a39094d59d20aa0 138 Gene3D G3DSA:1.10.940.10 1 138 2.6E-54 T 14-10-2018 IPR035926 NusB-like superfamily YP_0750 1f1db598d4494f6f2a39094d59d20aa0 138 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 6 132 4.7E-47 T 14-10-2018 IPR011605 NusB antitermination factor GO:0006353 YP_0750 1f1db598d4494f6f2a39094d59d20aa0 138 SUPERFAMILY SSF48013 3 135 2.49E-44 T 14-10-2018 IPR035926 NusB-like superfamily YP_0750 1f1db598d4494f6f2a39094d59d20aa0 138 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 4 135 24.287 T 14-10-2018 IPR011605 NusB antitermination factor GO:0006353 YP_3837 6d0a8219a363c0ca206e9aa9ca717a4c 477 PIRSF PIRSF000774 1 477 6.8E-147 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YP_3837 6d0a8219a363c0ca206e9aa9ca717a4c 477 Pfam PF04552 Sigma-54, DNA binding domain 317 475 3.4E-69 T 14-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding YP_3837 6d0a8219a363c0ca206e9aa9ca717a4c 477 PRINTS PR00045 Sigma-54 factor signature 186 203 7.3E-32 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YP_3837 6d0a8219a363c0ca206e9aa9ca717a4c 477 PRINTS PR00045 Sigma-54 factor signature 376 388 7.3E-32 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YP_3837 6d0a8219a363c0ca206e9aa9ca717a4c 477 PRINTS PR00045 Sigma-54 factor signature 450 468 7.3E-32 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YP_3837 6d0a8219a363c0ca206e9aa9ca717a4c 477 PRINTS PR00045 Sigma-54 factor signature 392 403 7.3E-32 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YP_3837 6d0a8219a363c0ca206e9aa9ca717a4c 477 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 4.0E-15 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YP_3837 6d0a8219a363c0ca206e9aa9ca717a4c 477 Gene3D G3DSA:1.10.10.60 417 474 1.9E-22 T 14-10-2018 YP_3837 6d0a8219a363c0ca206e9aa9ca717a4c 477 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 455 462 - T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YP_3837 6d0a8219a363c0ca206e9aa9ca717a4c 477 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 364 383 - T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YP_3837 6d0a8219a363c0ca206e9aa9ca717a4c 477 Gene3D G3DSA:1.10.10.1330 116 252 1.3E-24 T 14-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily YP_3837 6d0a8219a363c0ca206e9aa9ca717a4c 477 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 474 2.7E-156 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YP_3837 6d0a8219a363c0ca206e9aa9ca717a4c 477 Pfam PF04963 Sigma-54 factor, core binding domain 114 303 6.0E-60 T 14-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 YP_3553 dbe58b50454a40db1a1bf5a2f5b7864a 420 Gene3D G3DSA:3.40.190.10 58 371 4.7E-99 T 14-10-2018 YP_3553 dbe58b50454a40db1a1bf5a2f5b7864a 420 PRINTS PR00181 Maltose binding protein signature 78 96 2.1E-8 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YP_3553 dbe58b50454a40db1a1bf5a2f5b7864a 420 PRINTS PR00181 Maltose binding protein signature 138 157 2.1E-8 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YP_3553 dbe58b50454a40db1a1bf5a2f5b7864a 420 PRINTS PR00181 Maltose binding protein signature 371 390 2.1E-8 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YP_3553 dbe58b50454a40db1a1bf5a2f5b7864a 420 PRINTS PR00181 Maltose binding protein signature 159 178 2.1E-8 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YP_3553 dbe58b50454a40db1a1bf5a2f5b7864a 420 Pfam PF13416 Bacterial extracellular solute-binding protein 55 357 1.3E-52 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein YP_3553 dbe58b50454a40db1a1bf5a2f5b7864a 420 Gene3D G3DSA:3.40.190.10 147 404 4.7E-99 T 14-10-2018 YP_3553 dbe58b50454a40db1a1bf5a2f5b7864a 420 SUPERFAMILY SSF53850 40 409 1.13E-79 T 14-10-2018 YP_1026 5090e086e96ff52eeb5a715e29ae24d1 350 PIRSF PIRSF001361 1 350 4.2E-164 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 YP_1026 5090e086e96ff52eeb5a715e29ae24d1 350 Pfam PF00793 DAHP synthetase I family 41 338 4.5E-107 T 14-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 YP_1026 5090e086e96ff52eeb5a715e29ae24d1 350 Gene3D G3DSA:3.20.20.70 1 350 2.3E-170 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_1026 5090e086e96ff52eeb5a715e29ae24d1 350 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 349 3.6E-176 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 YP_1026 5090e086e96ff52eeb5a715e29ae24d1 350 SUPERFAMILY SSF51569 7 348 1.36E-137 T 14-10-2018 YP_1029 7b9a535719b03cc0b8e0b085c2314add 353 Gene3D G3DSA:3.40.50.10800 115 340 1.5E-94 T 14-10-2018 YP_1029 7b9a535719b03cc0b8e0b085c2314add 353 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 29 341 5.4E-121 T 14-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 YP_1029 7b9a535719b03cc0b8e0b085c2314add 353 Pfam PF02445 Quinolinate synthetase A protein 31 340 3.7E-103 T 14-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 YP_1029 7b9a535719b03cc0b8e0b085c2314add 353 Gene3D G3DSA:3.40.50.10800 200 295 1.5E-94 T 14-10-2018 YP_1029 7b9a535719b03cc0b8e0b085c2314add 353 Gene3D G3DSA:3.40.50.10800 31 322 1.5E-94 T 14-10-2018 YP_1029 7b9a535719b03cc0b8e0b085c2314add 353 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 347 71.082 T 14-10-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 YP_1029 7b9a535719b03cc0b8e0b085c2314add 353 SUPERFAMILY SSF142754 29 341 1.96E-106 T 14-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 YP_2005 ee1dcdc0482a4740359c80b115538d49 192 Pfam PF00117 Glutamine amidotransferase class-I 6 186 8.4E-44 T 14-10-2018 IPR017926 Glutamine amidotransferase YP_2005 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 49 63 7.6E-6 T 14-10-2018 YP_2005 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 79 95 7.6E-6 T 14-10-2018 YP_2005 ee1dcdc0482a4740359c80b115538d49 192 SUPERFAMILY SSF52317 3 190 4.01E-46 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_2005 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 7.0E-14 T 14-10-2018 YP_2005 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 7.0E-14 T 14-10-2018 YP_2005 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 7.0E-14 T 14-10-2018 YP_2005 ee1dcdc0482a4740359c80b115538d49 192 Gene3D G3DSA:3.40.50.880 1 192 5.1E-60 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_2005 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00097 Anthranilate synthase component II signature 52 61 2.1E-36 T 14-10-2018 YP_2005 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00097 Anthranilate synthase component II signature 79 90 2.1E-36 T 14-10-2018 YP_2005 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00097 Anthranilate synthase component II signature 104 112 2.1E-36 T 14-10-2018 YP_2005 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00097 Anthranilate synthase component II signature 166 179 2.1E-36 T 14-10-2018 YP_2005 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00097 Anthranilate synthase component II signature 4 18 2.1E-36 T 14-10-2018 YP_2005 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00097 Anthranilate synthase component II signature 124 136 2.1E-36 T 14-10-2018 YP_2005 ee1dcdc0482a4740359c80b115538d49 192 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 4 186 2.9E-55 T 14-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YP_0797 3b857e62a5d86f6197afb99825ec520d 107 Pfam PF01197 Ribosomal protein L31 22 99 4.7E-23 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0797 3b857e62a5d86f6197afb99825ec520d 107 Gene3D G3DSA:2.30.170.50 22 104 7.4E-21 T 14-10-2018 YP_0797 3b857e62a5d86f6197afb99825ec520d 107 SUPERFAMILY SSF143800 22 101 9.42E-21 T 14-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0797 3b857e62a5d86f6197afb99825ec520d 107 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 22 101 26.48 T 14-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0797 3b857e62a5d86f6197afb99825ec520d 107 PRINTS PR01249 Ribosomal protein L31 signature 65 80 2.8E-13 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0797 3b857e62a5d86f6197afb99825ec520d 107 PRINTS PR01249 Ribosomal protein L31 signature 80 98 2.8E-13 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0797 3b857e62a5d86f6197afb99825ec520d 107 PRINTS PR01249 Ribosomal protein L31 signature 23 40 2.8E-13 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0797 3b857e62a5d86f6197afb99825ec520d 107 TIGRFAM TIGR00105 L31: ribosomal protein bL31 22 100 5.4E-15 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_2633 b9e4bd23d207bf545c4da9084d6f1fe8 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 1.9E-24 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_2633 b9e4bd23d207bf545c4da9084d6f1fe8 235 SUPERFAMILY SSF52172 1 122 1.85E-42 T 14-10-2018 IPR011006 CheY-like superfamily YP_2633 b9e4bd23d207bf545c4da9084d6f1fe8 235 Gene3D G3DSA:3.40.50.2300 1 128 4.5E-39 T 14-10-2018 YP_2633 b9e4bd23d207bf545c4da9084d6f1fe8 235 SMART SM00448 1 112 7.3E-46 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_2633 b9e4bd23d207bf545c4da9084d6f1fe8 235 SUPERFAMILY SSF46894 128 226 2.47E-27 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_2633 b9e4bd23d207bf545c4da9084d6f1fe8 235 Gene3D G3DSA:1.10.10.10 129 231 3.2E-28 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2633 b9e4bd23d207bf545c4da9084d6f1fe8 235 SMART SM00862 150 226 3.3E-25 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_2633 b9e4bd23d207bf545c4da9084d6f1fe8 235 Pfam PF00072 Response regulator receiver domain 3 113 1.6E-31 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0434 a2ec89fb7ed0d44f251f7f94b59f2d5f 266 Gene3D G3DSA:3.40.50.300 1 266 5.8E-80 T 14-10-2018 YP_0434 a2ec89fb7ed0d44f251f7f94b59f2d5f 266 Pfam PF00005 ABC transporter 28 176 6.1E-25 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0434 a2ec89fb7ed0d44f251f7f94b59f2d5f 266 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0434 a2ec89fb7ed0d44f251f7f94b59f2d5f 266 SMART SM00382 36 225 5.1E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0434 a2ec89fb7ed0d44f251f7f94b59f2d5f 266 SUPERFAMILY SSF52540 11 241 7.21E-56 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0952 2a3e03edca5dd2fe89940657b7ff27bc 286 SUPERFAMILY SSF161098 88 274 3.92E-33 T 14-10-2018 IPR035906 MetI-like superfamily YP_0952 2a3e03edca5dd2fe89940657b7ff27bc 286 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 16 282 9.6E-85 T 14-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 YP_0952 2a3e03edca5dd2fe89940657b7ff27bc 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 271 2.3E-16 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_0952 2a3e03edca5dd2fe89940657b7ff27bc 286 Gene3D G3DSA:1.10.3720.10 87 284 1.5E-32 T 14-10-2018 IPR035906 MetI-like superfamily YP_1159 30d3c6f307a14dd085ad1f41ce6f4892 176 Pfam PF14345 GDYXXLXY protein 16 165 1.2E-34 T 14-10-2018 IPR025833 GDYXXLXY protein YP_1150 19092aec4dc203788ccceb4f2197cb15 190 Pfam PF05638 Type VI secretion system effector, Hcp 28 143 6.6E-23 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_1150 19092aec4dc203788ccceb4f2197cb15 190 SUPERFAMILY SSF141452 26 161 6.8E-35 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_1150 19092aec4dc203788ccceb4f2197cb15 190 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 156 2.1E-60 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_1150 19092aec4dc203788ccceb4f2197cb15 190 Gene3D G3DSA:2.30.110.20 3 160 3.9E-53 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_1976 b49b8ee4539c5f751d84c2f17dd11ace 891 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 720 740 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 YP_1976 b49b8ee4539c5f751d84c2f17dd11ace 891 Gene3D G3DSA:3.40.50.1970 450 643 4.2E-58 T 14-10-2018 YP_1976 b49b8ee4539c5f751d84c2f17dd11ace 891 Gene3D G3DSA:1.20.1090.10 645 865 1.8E-61 T 14-10-2018 YP_1976 b49b8ee4539c5f751d84c2f17dd11ace 891 Pfam PF00465 Iron-containing alcohol dehydrogenase 457 850 1.8E-114 T 14-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 YP_1976 b49b8ee4539c5f751d84c2f17dd11ace 891 Gene3D G3DSA:3.40.309.10 218 404 8.8E-181 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YP_1976 b49b8ee4539c5f751d84c2f17dd11ace 891 SUPERFAMILY SSF53720 6 453 2.62E-83 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YP_1976 b49b8ee4539c5f751d84c2f17dd11ace 891 Pfam PF00171 Aldehyde dehydrogenase family 5 399 1.1E-27 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YP_1976 b49b8ee4539c5f751d84c2f17dd11ace 891 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 632 660 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 YP_1976 b49b8ee4539c5f751d84c2f17dd11ace 891 PIRSF PIRSF000111 1 866 0.0 T 14-10-2018 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 YP_1976 b49b8ee4539c5f751d84c2f17dd11ace 891 SUPERFAMILY SSF56796 451 864 4.58E-119 T 14-10-2018 YP_1976 b49b8ee4539c5f751d84c2f17dd11ace 891 Gene3D G3DSA:3.40.605.10 10 444 8.8E-181 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YP_1016 5e69b7b4777c4a7fe9ce935630257dcb 50 Pfam PF10766 Multidrug efflux pump-associated protein AcrZ 1 46 5.3E-31 T 14-10-2018 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 YP_1016 5e69b7b4777c4a7fe9ce935630257dcb 50 Hamap MF_01484 Multidrug efflux pump accessory protein AcrZ [acrZ]. 1 47 19.556 T 14-10-2018 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 YP_0775 46c7895dfe6201db242cd9810500d63b 423 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 5 412 1.1E-212 T 14-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 YP_0775 46c7895dfe6201db242cd9810500d63b 423 SMART SM00994 12 51 1.0E-24 T 14-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 YP_0775 46c7895dfe6201db242cd9810500d63b 423 Gene3D G3DSA:3.30.50.30 2 52 9.3E-28 T 14-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily YP_0775 46c7895dfe6201db242cd9810500d63b 423 Gene3D G3DSA:3.40.50.300 62 315 3.4E-108 T 14-10-2018 YP_0775 46c7895dfe6201db242cd9810500d63b 423 SMART SM01086 317 412 4.5E-34 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_0775 46c7895dfe6201db242cd9810500d63b 423 SUPERFAMILY SSF52540 63 402 7.64E-71 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0775 46c7895dfe6201db242cd9810500d63b 423 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 4 415 53.371 T 14-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 YP_0775 46c7895dfe6201db242cd9810500d63b 423 SUPERFAMILY SSF57716 13 48 5.84E-12 T 14-10-2018 YP_0775 46c7895dfe6201db242cd9810500d63b 423 SMART SM00382 111 333 6.1E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0775 46c7895dfe6201db242cd9810500d63b 423 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 394 5.7E-17 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_0775 46c7895dfe6201db242cd9810500d63b 423 Pfam PF06689 ClpX C4-type zinc finger 13 50 1.2E-20 T 14-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 YP_0775 46c7895dfe6201db242cd9810500d63b 423 Pfam PF07724 AAA domain (Cdc48 subfamily) 112 310 2.2E-48 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_0775 46c7895dfe6201db242cd9810500d63b 423 Gene3D G3DSA:1.10.8.60 316 423 6.1E-42 T 14-10-2018 YP_3448 3517b7d754f922ba5b2dfcd05de99089 582 Gene3D G3DSA:1.10.510.40 364 564 7.8E-57 T 14-10-2018 YP_3448 3517b7d754f922ba5b2dfcd05de99089 582 Gene3D G3DSA:1.10.274.90 3 113 9.3E-14 T 14-10-2018 YP_3448 3517b7d754f922ba5b2dfcd05de99089 582 Pfam PF04183 IucA / IucC family 132 374 1.3E-67 T 14-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 YP_3448 3517b7d754f922ba5b2dfcd05de99089 582 Pfam PF06276 Ferric iron reductase FhuF-like transporter 396 551 1.0E-34 T 14-10-2018 IPR022770 Ferric iron reductase FhuF domain YP_1418 8e0aa327f4968c1d787a709605d1c928 515 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 99 438 1.1E-61 T 14-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 YP_1418 8e0aa327f4968c1d787a709605d1c928 515 Gene3D G3DSA:3.40.640.10 116 387 7.5E-84 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_1418 8e0aa327f4968c1d787a709605d1c928 515 Gene3D G3DSA:1.20.1650.10 26 101 4.9E-7 T 14-10-2018 YP_1418 8e0aa327f4968c1d787a709605d1c928 515 SUPERFAMILY SSF53383 56 505 2.25E-118 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_1418 8e0aa327f4968c1d787a709605d1c928 515 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 102 121 6.9E-6 T 14-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YP_1418 8e0aa327f4968c1d787a709605d1c928 515 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 420 439 6.9E-6 T 14-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YP_1418 8e0aa327f4968c1d787a709605d1c928 515 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 142 161 6.9E-6 T 14-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YP_1418 8e0aa327f4968c1d787a709605d1c928 515 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 377 392 6.9E-6 T 14-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YP_1418 8e0aa327f4968c1d787a709605d1c928 515 Gene3D G3DSA:3.90.1150.10 388 506 5.0E-34 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_1687 dbf84dd34f297f18e5a861390a745dfd 484 Pfam PF04945 YHS domain 423 469 2.8E-18 T 14-10-2018 IPR007029 YHS domain YP_1687 dbf84dd34f297f18e5a861390a745dfd 484 Pfam PF10080 Predicted membrane protein (DUF2318) 312 415 1.8E-28 T 14-10-2018 IPR018758 Domain of unknown function DUF2318, membrane YP_0615 241751e87d874da801f732ae29d67c6a 388 Pfam PF05426 Alginate lyase 56 335 1.1E-76 T 14-10-2018 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 YP_0615 241751e87d874da801f732ae29d67c6a 388 Gene3D G3DSA:1.50.10.100 11 388 1.1E-119 T 14-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 YP_0615 241751e87d874da801f732ae29d67c6a 388 SUPERFAMILY SSF48230 63 338 2.84E-56 T 14-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 YP_3114 1f1e2715f761021b0e104791c4b68765 142 SMART SM00649 9 141 1.3E-82 T 14-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 YP_3114 1f1e2715f761021b0e104791c4b68765 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 9.7E-24 T 14-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 YP_3114 1f1e2715f761021b0e104791c4b68765 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 9.5E-65 T 14-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_3114 1f1e2715f761021b0e104791c4b68765 142 SUPERFAMILY SSF46906 68 141 3.53E-25 T 14-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily YP_3114 1f1e2715f761021b0e104791c4b68765 142 SUPERFAMILY SSF54747 3 73 2.49E-30 T 14-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily YP_3114 1f1e2715f761021b0e104791c4b68765 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 1.0E-16 T 14-10-2018 YP_3114 1f1e2715f761021b0e104791c4b68765 142 Gene3D G3DSA:3.30.1550.10 2 72 2.1E-35 T 14-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily YP_3114 1f1e2715f761021b0e104791c4b68765 142 Gene3D G3DSA:1.10.10.250 73 141 2.3E-26 T 14-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily YP_3114 1f1e2715f761021b0e104791c4b68765 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 5.8E-30 T 14-10-2018 IPR020784 Ribosomal protein L11, N-terminal YP_3114 1f1e2715f761021b0e104791c4b68765 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 14-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_3114 1f1e2715f761021b0e104791c4b68765 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.272 T 14-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 YP_pMT090 c46fc44e20ffcf028c8402c6958b2634 440 SUPERFAMILY SSF50249 315 426 2.83E-24 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_pMT090 c46fc44e20ffcf028c8402c6958b2634 440 Pfam PF01068 ATP dependent DNA ligase domain 159 342 2.1E-11 T 14-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 YP_pMT090 c46fc44e20ffcf028c8402c6958b2634 440 SUPERFAMILY SSF56091 132 342 8.35E-26 T 14-10-2018 YP_pMT090 c46fc44e20ffcf028c8402c6958b2634 440 Gene3D G3DSA:2.40.50.140 360 435 3.8E-7 T 14-10-2018 YP_pMT090 c46fc44e20ffcf028c8402c6958b2634 440 Gene3D G3DSA:3.30.470.30 149 344 3.0E-12 T 14-10-2018 YP_2808 0960116e65a5a41372ac8347665c024c 263 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 168 186 - T 14-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 YP_2808 0960116e65a5a41372ac8347665c024c 263 SUPERFAMILY SSF55920 3 255 4.06E-90 T 14-10-2018 IPR036005 Creatinase/aminopeptidase-like YP_2808 0960116e65a5a41372ac8347665c024c 263 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 250 2.6E-108 T 14-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 YP_2808 0960116e65a5a41372ac8347665c024c 263 Hamap MF_01974 Methionine aminopeptidase [map]. 3 251 43.208 T 14-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 YP_2808 0960116e65a5a41372ac8347665c024c 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 1.2E-22 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YP_2808 0960116e65a5a41372ac8347665c024c 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 162 174 1.2E-22 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YP_2808 0960116e65a5a41372ac8347665c024c 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 92 108 1.2E-22 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YP_2808 0960116e65a5a41372ac8347665c024c 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 193 205 1.2E-22 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YP_2808 0960116e65a5a41372ac8347665c024c 263 Pfam PF00557 Metallopeptidase family M24 13 242 8.4E-52 T 14-10-2018 IPR000994 Peptidase M24 YP_2808 0960116e65a5a41372ac8347665c024c 263 Gene3D G3DSA:3.90.230.10 2 263 5.1E-117 T 14-10-2018 YP_3592 5f1418e722a1339403ca44df01a11363 233 SUPERFAMILY SSF46894 131 229 1.68E-24 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_3592 5f1418e722a1339403ca44df01a11363 233 SUPERFAMILY SSF52172 2 125 2.42E-36 T 14-10-2018 IPR011006 CheY-like superfamily YP_3592 5f1418e722a1339403ca44df01a11363 233 SMART SM00862 153 229 1.4E-20 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_3592 5f1418e722a1339403ca44df01a11363 233 SMART SM00448 4 115 2.0E-36 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_3592 5f1418e722a1339403ca44df01a11363 233 Gene3D G3DSA:1.10.10.10 133 231 5.2E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3592 5f1418e722a1339403ca44df01a11363 233 Gene3D G3DSA:3.40.50.2300 1 132 3.6E-32 T 14-10-2018 YP_3592 5f1418e722a1339403ca44df01a11363 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 229 1.1E-20 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_3592 5f1418e722a1339403ca44df01a11363 233 Pfam PF00072 Response regulator receiver domain 6 115 9.7E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_2441 553c120b51c578da1576af55dce2cec8 777 SUPERFAMILY SSF69279 17 203 3.66E-50 T 14-10-2018 YP_2441 553c120b51c578da1576af55dce2cec8 777 Gene3D G3DSA:2.40.50.230 373 474 4.1E-42 T 14-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YP_2441 553c120b51c578da1576af55dce2cec8 777 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 25 522 7.3E-119 T 14-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YP_2441 553c120b51c578da1576af55dce2cec8 777 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 17 539 2.2E-154 T 14-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YP_2441 553c120b51c578da1576af55dce2cec8 777 Gene3D G3DSA:3.55.50.10 117 207 1.7E-89 T 14-10-2018 YP_2441 553c120b51c578da1576af55dce2cec8 777 SUPERFAMILY SSF69279 211 382 1.58E-34 T 14-10-2018 YP_2441 553c120b51c578da1576af55dce2cec8 777 Gene3D G3DSA:3.30.1920.30 243 305 1.7E-89 T 14-10-2018 YP_2441 553c120b51c578da1576af55dce2cec8 777 Pfam PF05954 Phage late control gene D protein (GPD) 29 346 6.9E-87 T 14-10-2018 YP_2441 553c120b51c578da1576af55dce2cec8 777 SUPERFAMILY SSF69349 460 667 7.69E-44 T 14-10-2018 YP_2441 553c120b51c578da1576af55dce2cec8 777 SUPERFAMILY SSF69255 382 470 4.18E-32 T 14-10-2018 YP_2441 553c120b51c578da1576af55dce2cec8 777 Gene3D G3DSA:2.30.110.50 16 347 1.7E-89 T 14-10-2018 YP_1870 bfef616c97ec9d0bdc25d17637b95b2d 565 Pfam PF00916 Sulfate permease family 29 414 2.6E-81 T 14-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 YP_1870 bfef616c97ec9d0bdc25d17637b95b2d 565 TIGRFAM TIGR00815 sulP: sulfate permease 18 558 6.5E-131 T 14-10-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 YP_1870 bfef616c97ec9d0bdc25d17637b95b2d 565 ProSitePatterns PS01130 SLC26A transporters signature. 58 79 - T 14-10-2018 IPR018045 Sulphate anion transporter, conserved site GO:0008271|GO:0008272 Reactome: R-HSA-427601 YP_1870 bfef616c97ec9d0bdc25d17637b95b2d 565 SUPERFAMILY SSF52091 453 563 1.12E-12 T 14-10-2018 IPR036513 STAS domain superfamily YP_1870 bfef616c97ec9d0bdc25d17637b95b2d 565 Pfam PF01740 STAS domain 456 558 2.7E-8 T 14-10-2018 IPR002645 STAS domain YP_1870 bfef616c97ec9d0bdc25d17637b95b2d 565 Gene3D G3DSA:3.30.750.24 445 562 6.1E-22 T 14-10-2018 IPR036513 STAS domain superfamily YP_2314 63ed43e22b727223831b8f18a32585b9 330 Pfam PF02653 Branched-chain amino acid transport system / permease component 58 321 8.5E-52 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_3311 22b02cdb24a46709ac3182db1772debe 367 SUPERFAMILY SSF51735 1 147 2.76E-53 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3311 22b02cdb24a46709ac3182db1772debe 367 SUPERFAMILY SSF55347 134 354 4.05E-79 T 14-10-2018 YP_3311 22b02cdb24a46709ac3182db1772debe 367 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 2 367 6.9E-212 T 14-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YP_3311 22b02cdb24a46709ac3182db1772debe 367 SMART SM00859 3 122 2.9E-24 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 YP_3311 22b02cdb24a46709ac3182db1772debe 367 Gene3D G3DSA:3.30.360.10 135 350 7.7E-151 T 14-10-2018 YP_3311 22b02cdb24a46709ac3182db1772debe 367 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 261 275 - T 14-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YP_3311 22b02cdb24a46709ac3182db1772debe 367 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 144 353 6.9E-58 T 14-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YP_3311 22b02cdb24a46709ac3182db1772debe 367 PIRSF PIRSF000148 1 367 2.6E-69 T 14-10-2018 YP_3311 22b02cdb24a46709ac3182db1772debe 367 Gene3D G3DSA:3.40.50.720 4 356 7.7E-151 T 14-10-2018 YP_3311 22b02cdb24a46709ac3182db1772debe 367 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 367 33.846 T 14-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YP_3311 22b02cdb24a46709ac3182db1772debe 367 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 121 3.7E-23 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 YP_0845 d8c0f864bef792fd85657b6fc7eeff92 228 Pfam PF00005 ABC transporter 27 174 7.9E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0845 d8c0f864bef792fd85657b6fc7eeff92 228 Gene3D G3DSA:3.40.50.300 4 228 1.1E-61 T 14-10-2018 YP_0845 d8c0f864bef792fd85657b6fc7eeff92 228 SUPERFAMILY SSF52540 6 227 7.18E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0845 d8c0f864bef792fd85657b6fc7eeff92 228 SMART SM00382 35 223 1.3E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0845 d8c0f864bef792fd85657b6fc7eeff92 228 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0121 969728a9c6b5d98a43cbd07d72270146 214 Pfam PF13518 Helix-turn-helix domain 51 96 6.5E-9 T 14-10-2018 YP_0121 969728a9c6b5d98a43cbd07d72270146 214 Pfam PF13518 Helix-turn-helix domain 106 158 1.1E-11 T 14-10-2018 YP_0121 969728a9c6b5d98a43cbd07d72270146 214 SUPERFAMILY SSF46689 100 201 1.02E-13 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0121 969728a9c6b5d98a43cbd07d72270146 214 SUPERFAMILY SSF48295 33 96 4.08E-13 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 YP_3739 530293d5077ef74ecf579c674a791268 460 SUPERFAMILY SSF52540 71 290 4.59E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3739 530293d5077ef74ecf579c674a791268 460 Hamap MF_01498 DNA repair protein RadA [radA]. 22 458 42.847 T 14-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 YP_3739 530293d5077ef74ecf579c674a791268 460 Gene3D G3DSA:3.40.50.300 69 282 1.9E-38 T 14-10-2018 YP_3739 530293d5077ef74ecf579c674a791268 460 PRINTS PR01874 DNA repair protein radA signature 127 144 1.2E-93 T 14-10-2018 YP_3739 530293d5077ef74ecf579c674a791268 460 PRINTS PR01874 DNA repair protein radA signature 216 244 1.2E-93 T 14-10-2018 YP_3739 530293d5077ef74ecf579c674a791268 460 PRINTS PR01874 DNA repair protein radA signature 177 201 1.2E-93 T 14-10-2018 YP_3739 530293d5077ef74ecf579c674a791268 460 PRINTS PR01874 DNA repair protein radA signature 325 348 1.2E-93 T 14-10-2018 YP_3739 530293d5077ef74ecf579c674a791268 460 PRINTS PR01874 DNA repair protein radA signature 11 35 1.2E-93 T 14-10-2018 YP_3739 530293d5077ef74ecf579c674a791268 460 PRINTS PR01874 DNA repair protein radA signature 86 114 1.2E-93 T 14-10-2018 YP_3739 530293d5077ef74ecf579c674a791268 460 PRINTS PR01874 DNA repair protein radA signature 251 277 1.2E-93 T 14-10-2018 YP_3739 530293d5077ef74ecf579c674a791268 460 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 454 2.4E-232 T 14-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 YP_3739 530293d5077ef74ecf579c674a791268 460 SUPERFAMILY SSF54211 258 458 2.35E-42 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_3739 530293d5077ef74ecf579c674a791268 460 Pfam PF13541 Subunit ChlI of Mg-chelatase 348 433 3.7E-9 T 14-10-2018 YP_3739 530293d5077ef74ecf579c674a791268 460 Pfam PF13481 AAA domain 88 225 2.3E-13 T 14-10-2018 YP_3739 530293d5077ef74ecf579c674a791268 460 Gene3D G3DSA:3.30.230.10 306 460 2.2E-21 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_3739 530293d5077ef74ecf579c674a791268 460 SMART SM00382 94 248 1.9E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0196 d88428e496b37c12194a938287748596 131 Gene3D G3DSA:3.40.1260.10 1 131 3.6E-57 T 14-10-2018 IPR027396 DsrEFH-like YP_0196 d88428e496b37c12194a938287748596 131 Hamap MF_00390 Sulfurtransferase TusD [tusD]. 4 131 39.481 T 14-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 YP_0196 d88428e496b37c12194a938287748596 131 Pfam PF02635 DsrE/DsrF-like family 5 131 5.2E-28 T 14-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein YP_0196 d88428e496b37c12194a938287748596 131 SUPERFAMILY SSF75169 1 131 6.67E-37 T 14-10-2018 IPR027396 DsrEFH-like YP_0196 d88428e496b37c12194a938287748596 131 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 5 131 1.2E-54 T 14-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 YP_1021 681f8727fdec15b8108370597c5aaf32 350 SUPERFAMILY SSF54197 179 345 1.7E-54 T 14-10-2018 IPR036265 HIT-like superfamily YP_1021 681f8727fdec15b8108370597c5aaf32 350 Gene3D G3DSA:3.30.428.10 176 349 4.7E-69 T 14-10-2018 IPR036265 HIT-like superfamily YP_1021 681f8727fdec15b8108370597c5aaf32 350 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 1 346 5.3E-199 T 14-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 YP_1021 681f8727fdec15b8108370597c5aaf32 350 PIRSF PIRSF000808 1 341 7.4E-122 T 14-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 YP_1021 681f8727fdec15b8108370597c5aaf32 350 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 183 346 2.8E-68 T 14-10-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 YP_1021 681f8727fdec15b8108370597c5aaf32 350 Gene3D G3DSA:3.30.428.10 44 175 8.6E-58 T 14-10-2018 IPR036265 HIT-like superfamily YP_1021 681f8727fdec15b8108370597c5aaf32 350 SUPERFAMILY SSF54197 4 177 3.69E-72 T 14-10-2018 IPR036265 HIT-like superfamily YP_1021 681f8727fdec15b8108370597c5aaf32 350 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 4 176 6.4E-71 T 14-10-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 YP_1021 681f8727fdec15b8108370597c5aaf32 350 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 151 168 - T 14-10-2018 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 YP_3635 612b85499098e9a788e90cd4be9dd7c6 587 Gene3D G3DSA:3.30.450.330 236 549 6.3E-111 T 14-10-2018 YP_3635 612b85499098e9a788e90cd4be9dd7c6 587 Pfam PF00905 Penicillin binding protein transpeptidase domain 259 553 1.5E-80 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 YP_3635 612b85499098e9a788e90cd4be9dd7c6 587 Gene3D G3DSA:3.90.1310.30 58 234 5.5E-44 T 14-10-2018 YP_3635 612b85499098e9a788e90cd4be9dd7c6 587 Gene3D G3DSA:3.40.710.10 295 475 6.3E-111 T 14-10-2018 YP_3635 612b85499098e9a788e90cd4be9dd7c6 587 SUPERFAMILY SSF56519 62 233 9.42E-45 T 14-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 YP_3635 612b85499098e9a788e90cd4be9dd7c6 587 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 18 569 46.047 T 14-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YP_3635 612b85499098e9a788e90cd4be9dd7c6 587 Pfam PF03717 Penicillin-binding Protein dimerisation domain 67 219 2.7E-18 T 14-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 YP_3635 612b85499098e9a788e90cd4be9dd7c6 587 SUPERFAMILY SSF56601 234 562 1.18E-85 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YP_pCD67 edc47b6954dffc75cc612e6e016a99c7 322 Pfam PF03543 Yersinia/Haemophilus virulence surface antigen 103 319 3.2E-68 T 14-10-2018 IPR006473 Peptidase C58, YopT-type domain GO:0004197|GO:0009405 YP_pCD67 edc47b6954dffc75cc612e6e016a99c7 322 PRINTS PR01376 Yersinia/Haemophilus virulence surface antigen signature 216 231 4.8E-79 T 14-10-2018 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen GO:0004197 YP_pCD67 edc47b6954dffc75cc612e6e016a99c7 322 PRINTS PR01376 Yersinia/Haemophilus virulence surface antigen signature 20 36 4.8E-79 T 14-10-2018 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen GO:0004197 YP_pCD67 edc47b6954dffc75cc612e6e016a99c7 322 PRINTS PR01376 Yersinia/Haemophilus virulence surface antigen signature 103 126 4.8E-79 T 14-10-2018 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen GO:0004197 YP_pCD67 edc47b6954dffc75cc612e6e016a99c7 322 PRINTS PR01376 Yersinia/Haemophilus virulence surface antigen signature 268 288 4.8E-79 T 14-10-2018 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen GO:0004197 YP_pCD67 edc47b6954dffc75cc612e6e016a99c7 322 PRINTS PR01376 Yersinia/Haemophilus virulence surface antigen signature 157 183 4.8E-79 T 14-10-2018 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen GO:0004197 YP_pCD67 edc47b6954dffc75cc612e6e016a99c7 322 PRINTS PR01376 Yersinia/Haemophilus virulence surface antigen signature 130 146 4.8E-79 T 14-10-2018 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen GO:0004197 YP_pCD67 edc47b6954dffc75cc612e6e016a99c7 322 PRINTS PR01376 Yersinia/Haemophilus virulence surface antigen signature 52 71 4.8E-79 T 14-10-2018 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen GO:0004197 YP_pCD67 edc47b6954dffc75cc612e6e016a99c7 322 Gene3D G3DSA:3.90.70.20 245 294 9.7E-6 T 14-10-2018 YP_pCD67 edc47b6954dffc75cc612e6e016a99c7 322 TIGRFAM TIGR01586 yopT_cys_prot: cysteine protease domain, YopT-type 123 320 6.7E-56 T 14-10-2018 IPR006473 Peptidase C58, YopT-type domain GO:0004197|GO:0009405 YP_pCD67 edc47b6954dffc75cc612e6e016a99c7 322 SUPERFAMILY SSF54001 114 319 5.2E-45 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily YP_3729 4b6f2f1ea4c9dddc8ed64bdb40555b59 180 Gene3D G3DSA:3.90.950.10 1 175 5.1E-61 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like YP_3729 4b6f2f1ea4c9dddc8ed64bdb40555b59 180 SUPERFAMILY SSF52972 1 169 1.26E-56 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like YP_3729 4b6f2f1ea4c9dddc8ed64bdb40555b59 180 TIGRFAM TIGR00258 TIGR00258: inosine/xanthosine triphosphatase 7 170 3.1E-50 T 14-10-2018 IPR002786 Non-canonical purine NTP phosphatase YP_3729 4b6f2f1ea4c9dddc8ed64bdb40555b59 180 Hamap MF_00648 Non-canonical purine NTP phosphatase. 2 171 29.178 T 14-10-2018 IPR002786 Non-canonical purine NTP phosphatase YP_3729 4b6f2f1ea4c9dddc8ed64bdb40555b59 180 Pfam PF01931 Protein of unknown function DUF84 7 165 4.4E-52 T 14-10-2018 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 YP_3744 17a2445cade22234e81b07f539755204 472 Pfam PF02885 Glycosyl transferase family, helical bundle domain 38 99 9.0E-19 T 14-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_3744 17a2445cade22234e81b07f539755204 472 SUPERFAMILY SSF52418 107 366 6.93E-87 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_3744 17a2445cade22234e81b07f539755204 472 Pfam PF00591 Glycosyl transferase family, a/b domain 111 341 4.5E-50 T 14-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_3744 17a2445cade22234e81b07f539755204 472 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 145 160 - T 14-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_3744 17a2445cade22234e81b07f539755204 472 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 383 455 2.9E-24 T 14-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_3744 17a2445cade22234e81b07f539755204 472 Hamap MF_01628 Thymidine phosphorylase [deoA]. 34 470 47.05 T 14-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 YP_3744 17a2445cade22234e81b07f539755204 472 Gene3D G3DSA:3.40.1030.10 102 354 6.6E-129 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_3744 17a2445cade22234e81b07f539755204 472 SUPERFAMILY SSF47648 35 102 2.62E-21 T 14-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_3744 17a2445cade22234e81b07f539755204 472 SMART SM00941 382 456 7.3E-33 T 14-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_3744 17a2445cade22234e81b07f539755204 472 Gene3D G3DSA:3.90.1170.30 369 465 1.3E-32 T 14-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_3744 17a2445cade22234e81b07f539755204 472 Gene3D G3DSA:1.20.970.10 39 227 6.6E-129 T 14-10-2018 YP_3744 17a2445cade22234e81b07f539755204 472 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 37 455 7.0E-165 T 14-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_3744 17a2445cade22234e81b07f539755204 472 PIRSF PIRSF000478 33 471 1.7E-151 T 14-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_3744 17a2445cade22234e81b07f539755204 472 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 34 470 2.9E-228 T 14-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 YP_3744 17a2445cade22234e81b07f539755204 472 SUPERFAMILY SSF54680 369 471 1.12E-32 T 14-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_3818 a56e7c100433066dfeb775cc9e43b629 147 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 9 147 2.6E-67 T 14-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_3818 a56e7c100433066dfeb775cc9e43b629 147 SUPERFAMILY SSF52161 6 145 2.62E-60 T 14-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 YP_3818 a56e7c100433066dfeb775cc9e43b629 147 ProSitePatterns PS00783 Ribosomal protein L13 signature. 110 132 - T 14-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 YP_3818 a56e7c100433066dfeb775cc9e43b629 147 Pfam PF00572 Ribosomal protein L13 20 143 9.6E-57 T 14-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 YP_3818 a56e7c100433066dfeb775cc9e43b629 147 PIRSF PIRSF002181 3 147 8.3E-51 T 14-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 YP_3818 a56e7c100433066dfeb775cc9e43b629 147 Gene3D G3DSA:3.90.1180.10 6 147 1.5E-64 T 14-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 YP_3818 a56e7c100433066dfeb775cc9e43b629 147 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 20 146 28.544 T 14-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 YP_1338 f345a070c025c027d7eda26b5e1ab93c 109 Gene3D G3DSA:1.10.10.370 39 109 1.6E-32 T 14-10-2018 YP_1338 f345a070c025c027d7eda26b5e1ab93c 109 Pfam PF04358 DsrC like protein 3 109 1.1E-46 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE YP_1338 f345a070c025c027d7eda26b5e1ab93c 109 PIRSF PIRSF006223 2 109 1.5E-47 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE YP_1338 f345a070c025c027d7eda26b5e1ab93c 109 SUPERFAMILY SSF69721 2 109 2.88E-42 T 14-10-2018 IPR025526 DsrC-like domain superfamily YP_1338 f345a070c025c027d7eda26b5e1ab93c 109 Gene3D G3DSA:3.30.1420.10 1 37 2.3E-12 T 14-10-2018 YP_1338 f345a070c025c027d7eda26b5e1ab93c 109 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 2 109 4.5E-51 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE YP_4008 510914fba22b3ad18df9553c6e8ea155 119 Gene3D G3DSA:3.30.230.10 1 119 8.6E-45 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_4008 510914fba22b3ad18df9553c6e8ea155 119 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 115 17.542 T 14-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 YP_4008 510914fba22b3ad18df9553c6e8ea155 119 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 56 70 - T 14-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 YP_4008 510914fba22b3ad18df9553c6e8ea155 119 SUPERFAMILY SSF54211 5 114 9.36E-32 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_4008 510914fba22b3ad18df9553c6e8ea155 119 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 17 98 3.0E-42 T 14-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 YP_4008 510914fba22b3ad18df9553c6e8ea155 119 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 5 114 6.3E-36 T 14-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 YP_4008 510914fba22b3ad18df9553c6e8ea155 119 Pfam PF00825 Ribonuclease P 6 111 2.7E-32 T 14-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 YP_3411 2a1b630ddb7b8b6e6188eec2b42f270f 425 SUPERFAMILY SSF111369 81 329 3.66E-55 T 14-10-2018 YP_3411 2a1b630ddb7b8b6e6188eec2b42f270f 425 Pfam PF13533 Biotin-lipoyl like 93 139 1.0E-7 T 14-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YP_3411 2a1b630ddb7b8b6e6188eec2b42f270f 425 Gene3D G3DSA:2.40.420.20 317 407 7.8E-20 T 14-10-2018 YP_3411 2a1b630ddb7b8b6e6188eec2b42f270f 425 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 67 405 1.2E-72 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YP_3411 2a1b630ddb7b8b6e6188eec2b42f270f 425 Gene3D G3DSA:2.40.30.170 85 316 2.4E-66 T 14-10-2018 YP_3411 2a1b630ddb7b8b6e6188eec2b42f270f 425 Gene3D G3DSA:1.10.287.470 126 199 2.4E-66 T 14-10-2018 YP_3411 2a1b630ddb7b8b6e6188eec2b42f270f 425 Gene3D G3DSA:2.40.50.100 91 234 2.4E-66 T 14-10-2018 YP_0575 da4cd3168489fc3ee9c8ed1ea342a1cc 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 279 293 1.1E-7 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0575 da4cd3168489fc3ee9c8ed1ea342a1cc 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 328 1.1E-7 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YP_0575 da4cd3168489fc3ee9c8ed1ea342a1cc 355 Gene3D G3DSA:3.30.565.10 205 353 7.6E-28 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0575 da4cd3168489fc3ee9c8ed1ea342a1cc 355 Gene3D G3DSA:1.10.287.130 87 197 1.7E-17 T 14-10-2018 YP_0575 da4cd3168489fc3ee9c8ed1ea342a1cc 355 SMART SM00388 136 196 4.7E-10 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0575 da4cd3168489fc3ee9c8ed1ea342a1cc 355 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 242 350 1.5E-15 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0575 da4cd3168489fc3ee9c8ed1ea342a1cc 355 SMART SM00387 242 351 4.3E-24 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_0575 da4cd3168489fc3ee9c8ed1ea342a1cc 355 SUPERFAMILY SSF55874 186 349 1.7E-30 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_0575 da4cd3168489fc3ee9c8ed1ea342a1cc 355 SUPERFAMILY SSF47384 121 194 7.85E-12 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YP_0575 da4cd3168489fc3ee9c8ed1ea342a1cc 355 Pfam PF00512 His Kinase A (phospho-acceptor) domain 138 195 5.5E-9 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YP_0915 ca6618d5f9acc0ea151c5e93e3e44902 388 Pfam PF00144 Beta-lactamase 50 367 1.1E-61 T 14-10-2018 IPR001466 Beta-lactamase-related YP_0915 ca6618d5f9acc0ea151c5e93e3e44902 388 SUPERFAMILY SSF56601 43 367 1.23E-67 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YP_0915 ca6618d5f9acc0ea151c5e93e3e44902 388 Gene3D G3DSA:3.40.710.10 37 386 1.2E-138 T 14-10-2018 YP_1899 f7080578c14816d77898f28a8a81e08d 173 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 158 2.7E-80 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 YP_1899 f7080578c14816d77898f28a8a81e08d 173 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 46.828 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 YP_1899 f7080578c14816d77898f28a8a81e08d 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 6.6E-42 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 YP_1899 f7080578c14816d77898f28a8a81e08d 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 6.6E-42 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 YP_1899 f7080578c14816d77898f28a8a81e08d 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 6.6E-42 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 YP_1899 f7080578c14816d77898f28a8a81e08d 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 6.6E-42 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 YP_1899 f7080578c14816d77898f28a8a81e08d 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 6.6E-42 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 YP_1899 f7080578c14816d77898f28a8a81e08d 173 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 14-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 YP_1899 f7080578c14816d77898f28a8a81e08d 173 SUPERFAMILY SSF53098 3 156 4.55E-55 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1899 f7080578c14816d77898f28a8a81e08d 173 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 3.3E-65 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 YP_1899 f7080578c14816d77898f28a8a81e08d 173 Gene3D G3DSA:3.30.420.10 2 159 5.5E-54 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_3952 8eea7a8b32721e4f83c5efa965ef8488 255 Gene3D G3DSA:1.25.40.590 31 190 5.2E-51 T 14-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily YP_3952 8eea7a8b32721e4f83c5efa965ef8488 255 Pfam PF09850 Type VI secretion system protein DotU 36 238 4.5E-57 T 14-10-2018 IPR017732 Type IV / VI secretion system, DotU YP_3952 8eea7a8b32721e4f83c5efa965ef8488 255 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 34 243 1.4E-61 T 14-10-2018 IPR017732 Type IV / VI secretion system, DotU YP_1336 282365fc364266a1231ee08d4e682e51 396 Gene3D G3DSA:3.30.750.80 73 181 2.1E-37 T 14-10-2018 YP_1336 282365fc364266a1231ee08d4e682e51 396 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 174 370 4.2E-27 T 14-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 YP_1336 282365fc364266a1231ee08d4e682e51 396 SUPERFAMILY SSF88697 4 72 8.45E-16 T 14-10-2018 IPR015947 PUA-like superfamily YP_1336 282365fc364266a1231ee08d4e682e51 396 SUPERFAMILY SSF53335 79 392 2.39E-70 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1336 282365fc364266a1231ee08d4e682e51 396 Gene3D G3DSA:3.40.50.150 183 396 6.1E-69 T 14-10-2018 YP_1336 282365fc364266a1231ee08d4e682e51 396 SMART SM00359 3 88 5.9E-12 T 14-10-2018 IPR002478 PUA domain GO:0003723 YP_1336 282365fc364266a1231ee08d4e682e51 396 Hamap MF_01857 Ribosomal RNA large subunit methyltransferase I [rlmI]. 1 396 67.868 T 14-10-2018 IPR023542 rRNA large subunit methyltransferase I GO:0008649 YP_1336 282365fc364266a1231ee08d4e682e51 396 Gene3D G3DSA:2.30.130.10 1 72 3.3E-29 T 14-10-2018 IPR036974 PUA domain superfamily GO:0003723 YP_1484 39cbf2513d0e42891ec817b45656738d 503 Pfam PF00324 Amino acid permease 64 491 6.0E-118 T 14-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 YP_1484 39cbf2513d0e42891ec817b45656738d 503 PIRSF PIRSF006060 41 495 5.8E-78 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_1484 39cbf2513d0e42891ec817b45656738d 503 ProSitePatterns PS00218 Amino acid permeases signature. 89 119 - T 14-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 YP_1484 39cbf2513d0e42891ec817b45656738d 503 Gene3D G3DSA:1.20.1740.10 56 502 1.3E-58 T 14-10-2018 YP_pCD88 3ead22ef75d3a720bdeafdc38e99307b 269 SUPERFAMILY SSF53098 100 263 5.18E-38 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_pCD88 3ead22ef75d3a720bdeafdc38e99307b 269 Gene3D G3DSA:3.30.420.10 99 253 1.7E-19 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_pCD88 3ead22ef75d3a720bdeafdc38e99307b 269 Pfam PF13683 Integrase core domain 191 256 1.1E-28 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_pCD88 3ead22ef75d3a720bdeafdc38e99307b 269 Pfam PF13276 HTH-like domain 34 88 1.3E-11 T 14-10-2018 IPR025948 HTH-like domain YP_0186 e389ec1ebe26cda5ea1cdfc81ed5c529 329 Pfam PF00535 Glycosyl transferase family 2 7 134 7.8E-30 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 YP_0186 e389ec1ebe26cda5ea1cdfc81ed5c529 329 SUPERFAMILY SSF53448 6 232 4.36E-50 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_0186 e389ec1ebe26cda5ea1cdfc81ed5c529 329 Gene3D G3DSA:3.90.550.10 5 205 1.8E-44 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_2209 7e77339e8dfe124ab28bc3dc3556627e 384 Hamap MF_01167 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase [arnB]. 1 379 71.275 T 14-10-2018 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB GO:0008483 KEGG: 00520+2.6.1.87 YP_2209 7e77339e8dfe124ab28bc3dc3556627e 384 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 12 373 4.5E-128 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YP_2209 7e77339e8dfe124ab28bc3dc3556627e 384 Gene3D G3DSA:3.40.640.10 1 252 1.7E-94 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_2209 7e77339e8dfe124ab28bc3dc3556627e 384 PIRSF PIRSF000390 1 381 2.5E-111 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YP_2209 7e77339e8dfe124ab28bc3dc3556627e 384 Gene3D G3DSA:3.90.1150.10 253 382 2.6E-37 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_2209 7e77339e8dfe124ab28bc3dc3556627e 384 SUPERFAMILY SSF53383 4 376 1.8E-110 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_0190 d37417b7762adabd3ddffd605e045dc1 73 Pfam PF09526 Probable metal-binding protein (DUF2387) 10 59 8.1E-20 T 14-10-2018 IPR012658 Conserved hypothetical protein CHP02443 YP_0190 d37417b7762adabd3ddffd605e045dc1 73 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 10 67 5.8E-30 T 14-10-2018 IPR012658 Conserved hypothetical protein CHP02443 YP_0570 0f52e8618b3535b2e3ae528218afd421 323 SUPERFAMILY SSF48576 6 322 4.46E-97 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily YP_0570 0f52e8618b3535b2e3ae528218afd421 323 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 14-10-2018 IPR033749 Polyprenyl synthetase, conserved site YP_0570 0f52e8618b3535b2e3ae528218afd421 323 Pfam PF00348 Polyprenyl synthetase 32 263 3.2E-76 T 14-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 YP_0570 0f52e8618b3535b2e3ae528218afd421 323 Gene3D G3DSA:1.10.600.10 1 322 1.8E-120 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily YP_0570 0f52e8618b3535b2e3ae528218afd421 323 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 14-10-2018 IPR033749 Polyprenyl synthetase, conserved site YP_2240 bfb8db4e828ec1e83ddf7360a491653f 288 Hamap MF_01604 Thiamine kinase [thiK]. 9 284 41.969 T 14-10-2018 IPR014093 Thiamine kinase GO:0006772|GO:0016310|GO:0019165 KEGG: 00730+2.7.1.89|MetaCyc: PWY-6896 YP_2240 bfb8db4e828ec1e83ddf7360a491653f 288 Pfam PF01636 Phosphotransferase enzyme family 31 234 8.4E-16 T 14-10-2018 IPR002575 Aminoglycoside phosphotransferase YP_2240 bfb8db4e828ec1e83ddf7360a491653f 288 TIGRFAM TIGR02721 ycfN_thiK: thiamine kinase 27 284 2.1E-108 T 14-10-2018 IPR014093 Thiamine kinase GO:0006772|GO:0016310|GO:0019165 KEGG: 00730+2.7.1.89|MetaCyc: PWY-6896 YP_2240 bfb8db4e828ec1e83ddf7360a491653f 288 SUPERFAMILY SSF56112 10 285 1.28E-37 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily YP_2240 bfb8db4e828ec1e83ddf7360a491653f 288 Gene3D G3DSA:3.90.1200.10 108 285 3.9E-18 T 14-10-2018 YP_2084 f88873802ada7709f80305495755c25e 134 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 49 128 8.2E-38 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 YP_2084 f88873802ada7709f80305495755c25e 134 SUPERFAMILY SSF46767 48 131 1.96E-34 T 14-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 YP_2084 f88873802ada7709f80305495755c25e 134 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 99 105 - T 14-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 YP_2084 f88873802ada7709f80305495755c25e 134 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 50 129 1.8E-34 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 YP_2084 f88873802ada7709f80305495755c25e 134 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 9 129 37.81 T 14-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 YP_2084 f88873802ada7709f80305495755c25e 134 Gene3D G3DSA:1.10.10.10 48 131 4.2E-37 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2084 f88873802ada7709f80305495755c25e 134 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 3 45 1.4E-4 T 14-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 YP_0939 ebf882104f052e3ed4a639041a62afdd 312 Pfam PF00005 ABC transporter 17 163 4.3E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0939 ebf882104f052e3ed4a639041a62afdd 312 SUPERFAMILY SSF52540 1 240 1.41E-77 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0939 ebf882104f052e3ed4a639041a62afdd 312 Gene3D G3DSA:3.40.50.300 1 244 4.4E-77 T 14-10-2018 YP_0939 ebf882104f052e3ed4a639041a62afdd 312 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0939 ebf882104f052e3ed4a639041a62afdd 312 SUPERFAMILY SSF54631 269 306 1.7E-5 T 14-10-2018 YP_0939 ebf882104f052e3ed4a639041a62afdd 312 SMART SM00382 26 213 2.9E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0219 138f8966827b522aff2eefaac3f66634 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 6.0E-41 T 14-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0219 138f8966827b522aff2eefaac3f66634 179 Pfam PF00281 Ribosomal protein L5 24 80 1.4E-28 T 14-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0219 138f8966827b522aff2eefaac3f66634 179 Gene3D G3DSA:3.30.1440.10 1 179 3.7E-81 T 14-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0219 138f8966827b522aff2eefaac3f66634 179 SUPERFAMILY SSF55282 4 179 7.53E-79 T 14-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0219 138f8966827b522aff2eefaac3f66634 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.604 T 14-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0219 138f8966827b522aff2eefaac3f66634 179 PIRSF PIRSF002161 1 179 6.1E-66 T 14-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_1579 4c767caed248859f6fb0c084ed567435 547 SUPERFAMILY SSF52540 43 274 1.67E-50 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1579 4c767caed248859f6fb0c084ed567435 547 Gene3D G3DSA:3.40.50.300 283 542 3.1E-40 T 14-10-2018 YP_1579 4c767caed248859f6fb0c084ed567435 547 Pfam PF00005 ABC transporter 58 214 4.0E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1579 4c767caed248859f6fb0c084ed567435 547 Pfam PF00005 ABC transporter 315 469 9.3E-13 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1579 4c767caed248859f6fb0c084ed567435 547 ProSitePatterns PS00211 ABC transporters family signature. 442 456 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1579 4c767caed248859f6fb0c084ed567435 547 Gene3D G3DSA:3.40.50.300 38 280 1.1E-50 T 14-10-2018 YP_1579 4c767caed248859f6fb0c084ed567435 547 SUPERFAMILY SSF52540 309 528 1.9E-39 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1579 4c767caed248859f6fb0c084ed567435 547 SMART SM00382 67 263 3.0E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3211 ad671fa2967a624c859152fe1386879d 332 Pfam PF01544 CorA-like Mg2+ transporter protein 42 328 2.1E-53 T 14-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 YP_3211 ad671fa2967a624c859152fe1386879d 332 SUPERFAMILY SSF143865 15 271 2.88E-37 T 14-10-2018 YP_3211 ad671fa2967a624c859152fe1386879d 332 SUPERFAMILY SSF144083 267 330 1.44E-20 T 14-10-2018 YP_3211 ad671fa2967a624c859152fe1386879d 332 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 20 332 1.5E-106 T 14-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 YP_3211 ad671fa2967a624c859152fe1386879d 332 Gene3D G3DSA:1.20.58.340 256 332 8.1E-26 T 14-10-2018 YP_0518 d6de95fec3fa51227f838bdcc9980af9 1119 SUPERFAMILY SSF82689 999 1094 3.79E-14 T 14-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 YP_0518 d6de95fec3fa51227f838bdcc9980af9 1119 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 961 995 - T 14-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 YP_0518 d6de95fec3fa51227f838bdcc9980af9 1119 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 492 828 2.4E-115 T 14-10-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YP_0518 d6de95fec3fa51227f838bdcc9980af9 1119 SUPERFAMILY SSF50182 932 997 9.81E-17 T 14-10-2018 IPR010920 LSM domain superfamily YP_0518 d6de95fec3fa51227f838bdcc9980af9 1119 Gene3D G3DSA:2.30.30.60 947 996 1.1E-10 T 14-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily YP_0518 d6de95fec3fa51227f838bdcc9980af9 1119 SUPERFAMILY SSF82861 847 930 4.84E-8 T 14-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 YP_0518 d6de95fec3fa51227f838bdcc9980af9 1119 Pfam PF12795 Mechanosensitive ion channel porin domain 42 270 8.1E-62 T 14-10-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain YP_0518 d6de95fec3fa51227f838bdcc9980af9 1119 Gene3D G3DSA:3.30.70.100 1000 1092 8.2E-8 T 14-10-2018 YP_0518 d6de95fec3fa51227f838bdcc9980af9 1119 Pfam PF00924 Mechanosensitive ion channel 889 1087 1.1E-51 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 YP_0051 698270ae59188f8d755aff7ecd13ae45 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.332 T 14-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0051 698270ae59188f8d755aff7ecd13ae45 78 Pfam PF00830 Ribosomal L28 family 3 62 6.5E-26 T 14-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0051 698270ae59188f8d755aff7ecd13ae45 78 SUPERFAMILY SSF143800 1 77 2.94E-30 T 14-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0051 698270ae59188f8d755aff7ecd13ae45 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 57 4.1E-29 T 14-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0051 698270ae59188f8d755aff7ecd13ae45 78 Gene3D G3DSA:2.30.170.40 2 78 3.3E-33 T 14-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2359 4cae8759424fe3d9adb72cf71209af88 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2359 4cae8759424fe3d9adb72cf71209af88 180 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 7 147 27.161 T 14-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2359 4cae8759424fe3d9adb72cf71209af88 180 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 16 137 4.1E-52 T 14-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2359 4cae8759424fe3d9adb72cf71209af88 180 Gene3D G3DSA:3.30.70.3270 33 176 4.9E-43 T 14-10-2018 YP_2359 4cae8759424fe3d9adb72cf71209af88 180 SUPERFAMILY SSF54862 33 156 4.06E-29 T 14-10-2018 YP_2359 4cae8759424fe3d9adb72cf71209af88 180 Pfam PF12838 4Fe-4S dicluster domain 59 113 4.7E-12 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_3133 9dcfcf1a3706e467c0fc06fdaeb72a93 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.8E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3133 9dcfcf1a3706e467c0fc06fdaeb72a93 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.8E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3133 9dcfcf1a3706e467c0fc06fdaeb72a93 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.8E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3133 9dcfcf1a3706e467c0fc06fdaeb72a93 305 Gene3D G3DSA:1.10.10.10 1 84 1.2E-27 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3133 9dcfcf1a3706e467c0fc06fdaeb72a93 305 SUPERFAMILY SSF46785 1 110 5.14E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3133 9dcfcf1a3706e467c0fc06fdaeb72a93 305 Pfam PF03466 LysR substrate binding domain 88 293 2.9E-51 T 14-10-2018 IPR005119 LysR, substrate-binding YP_3133 9dcfcf1a3706e467c0fc06fdaeb72a93 305 Gene3D G3DSA:3.40.190.10 164 267 1.2E-75 T 14-10-2018 YP_3133 9dcfcf1a3706e467c0fc06fdaeb72a93 305 SUPERFAMILY SSF53850 89 297 2.33E-45 T 14-10-2018 YP_3133 9dcfcf1a3706e467c0fc06fdaeb72a93 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 6.0E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3133 9dcfcf1a3706e467c0fc06fdaeb72a93 305 Gene3D G3DSA:3.40.190.10 91 280 1.2E-75 T 14-10-2018 YP_0655 18e525c0c396ccaeaced5caa8156be4a 243 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 20 241 5.5E-76 T 14-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase YP_0655 18e525c0c396ccaeaced5caa8156be4a 243 Gene3D G3DSA:3.60.140.10 1 243 9.2E-94 T 14-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily YP_0655 18e525c0c396ccaeaced5caa8156be4a 243 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 25 242 1.5E-67 T 14-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase YP_0655 18e525c0c396ccaeaced5caa8156be4a 243 SUPERFAMILY SSF64438 3 242 1.72E-86 T 14-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic YP_3664 274c3a001e168e5dc8628bfa2d5ef314 1164 Gene3D G3DSA:3.40.50.300 124 324 7.6E-7 T 14-10-2018 YP_3664 274c3a001e168e5dc8628bfa2d5ef314 1164 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 7 1162 0.0 T 14-10-2018 IPR017731 Type VI secretion system, IcmF YP_3664 274c3a001e168e5dc8628bfa2d5ef314 1164 Pfam PF14331 ImcF-related N-terminal domain 197 377 4.0E-29 T 14-10-2018 IPR025743 ImcF-related, N-terminal domain YP_3664 274c3a001e168e5dc8628bfa2d5ef314 1164 SUPERFAMILY SSF52540 122 274 2.83E-10 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3664 274c3a001e168e5dc8628bfa2d5ef314 1164 Pfam PF06761 Intracellular multiplication and human macrophage-killing 513 792 9.0E-61 T 14-10-2018 IPR009612 ImcF-related YP_3664 274c3a001e168e5dc8628bfa2d5ef314 1164 Pfam PF06744 Type VI secretion protein IcmF C-terminal 916 1110 6.5E-54 T 14-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal YP_2189 35fbaf21556386d3918d40ee984f407e 257 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 11 253 4.1E-111 T 14-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 YP_2189 35fbaf21556386d3918d40ee984f407e 257 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2189 35fbaf21556386d3918d40ee984f407e 257 SUPERFAMILY SSF52540 10 240 7.06E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2189 35fbaf21556386d3918d40ee984f407e 257 SMART SM00382 35 232 2.0E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2189 35fbaf21556386d3918d40ee984f407e 257 Gene3D G3DSA:3.40.50.300 10 257 4.0E-65 T 14-10-2018 YP_2189 35fbaf21556386d3918d40ee984f407e 257 Pfam PF00005 ABC transporter 26 181 2.8E-20 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2197 3491a9fe4a1d6d827de8fbe40d9db6cf 273 Pfam PF03618 Kinase/pyrophosphorylase 5 263 2.2E-73 T 14-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 YP_2197 3491a9fe4a1d6d827de8fbe40d9db6cf 273 SUPERFAMILY SSF47454 173 230 6.28E-5 T 14-10-2018 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain superfamily GO:0003677|GO:0006355 YP_2197 3491a9fe4a1d6d827de8fbe40d9db6cf 273 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 2 272 73.599 T 14-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein YP_1797 15ac4a7cf7dffc1a67c706f026124ff7 165 SMART SM00260 14 151 4.8E-43 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 YP_1797 15ac4a7cf7dffc1a67c706f026124ff7 165 SUPERFAMILY SSF50341 17 158 2.09E-39 T 14-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 YP_1797 15ac4a7cf7dffc1a67c706f026124ff7 165 Gene3D G3DSA:2.30.30.40 20 145 1.1E-39 T 14-10-2018 YP_1797 15ac4a7cf7dffc1a67c706f026124ff7 165 Gene3D G3DSA:2.40.50.180 37 146 1.1E-39 T 14-10-2018 YP_1797 15ac4a7cf7dffc1a67c706f026124ff7 165 Pfam PF01584 CheW-like domain 18 154 2.2E-37 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 YP_3914 744faa37c194f49620be8071d5afa128 352 Gene3D G3DSA:3.40.50.2300 154 291 3.5E-92 T 14-10-2018 YP_3914 744faa37c194f49620be8071d5afa128 352 Gene3D G3DSA:3.40.50.2300 55 324 3.5E-92 T 14-10-2018 YP_3914 744faa37c194f49620be8071d5afa128 352 Pfam PF13407 Periplasmic binding protein domain 55 312 1.4E-53 T 14-10-2018 IPR025997 Periplasmic binding protein YP_3914 744faa37c194f49620be8071d5afa128 352 SUPERFAMILY SSF53822 51 350 5.8E-65 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_1394 873d416aad289cfbd167c68fca48d092 383 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 13 370 4.0E-88 T 14-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB YP_1394 873d416aad289cfbd167c68fca48d092 383 Gene3D G3DSA:1.20.1250.20 1 380 3.7E-14 T 14-10-2018 YP_1394 873d416aad289cfbd167c68fca48d092 383 SUPERFAMILY SSF103473 6 377 1.96E-23 T 14-10-2018 IPR036259 MFS transporter superfamily YP_3023 089ea2b829d1c1d0310b4a71edca5bea 299 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 225 284 1.7E-7 T 14-10-2018 IPR001543 Surface presentation of antigen (SpoA) YP_3023 089ea2b829d1c1d0310b4a71edca5bea 299 SUPERFAMILY SSF101801 222 284 1.57E-6 T 14-10-2018 IPR036429 SpoA-like superfamily YP_2587 d3deba8417b2e84d169a8e0502299c32 174 Pfam PF09900 Predicted membrane protein (DUF2127) 23 161 2.2E-29 T 14-10-2018 IPR021125 Protein of unknown function DUF2127 YP_2587 d3deba8417b2e84d169a8e0502299c32 174 PIRSF PIRSF034455 1 170 3.7E-45 T 14-10-2018 IPR014591 Uncharacterised conserved protein UCP034455 YP_0693 92b380b85ee61695a3bc01f582240f84 475 Hamap MF_00425 Na(+)-translocating NADH-quinone reductase subunit A [nqrA]. 29 475 47.513 T 14-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 YP_0693 92b380b85ee61695a3bc01f582240f84 475 TIGRFAM TIGR01936 nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit 30 475 3.2E-189 T 14-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 YP_0693 92b380b85ee61695a3bc01f582240f84 475 Pfam PF11973 NQRA C-terminal domain 290 338 5.8E-22 T 14-10-2018 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain GO:0016655|GO:0055114 YP_0693 92b380b85ee61695a3bc01f582240f84 475 Pfam PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) 29 285 5.1E-120 T 14-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 YP_3734 6dc82d3f0bc49bd7bd88e3e216462f04 425 Gene3D G3DSA:3.30.70.270 245 414 1.9E-54 T 14-10-2018 YP_3734 6dc82d3f0bc49bd7bd88e3e216462f04 425 SUPERFAMILY SSF55073 256 410 4.94E-47 T 14-10-2018 IPR029787 Nucleotide cyclase YP_3734 6dc82d3f0bc49bd7bd88e3e216462f04 425 Pfam PF17152 Periplasmic sensor domain 47 148 1.4E-30 T 14-10-2018 IPR033417 Periplasmic sensor domain CHASE8 YP_3734 6dc82d3f0bc49bd7bd88e3e216462f04 425 SMART SM00267 240 414 6.2E-65 T 14-10-2018 IPR000160 GGDEF domain YP_3734 6dc82d3f0bc49bd7bd88e3e216462f04 425 Pfam PF00990 Diguanylate cyclase, GGDEF domain 251 406 9.0E-49 T 14-10-2018 IPR000160 GGDEF domain YP_3734 6dc82d3f0bc49bd7bd88e3e216462f04 425 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 248 408 1.7E-45 T 14-10-2018 IPR000160 GGDEF domain YP_3107 95c195ceb4cdc6416a0cad2ae4d2f1d1 381 SMART SM00876 264 367 4.6E-32 T 14-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 YP_3107 95c195ceb4cdc6416a0cad2ae4d2f1d1 381 Gene3D G3DSA:3.20.20.70 19 371 4.4E-107 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3107 95c195ceb4cdc6416a0cad2ae4d2f1d1 381 TIGRFAM TIGR02351 thiH: thiazole biosynthesis protein ThiH 10 374 1.5E-165 T 14-10-2018 IPR012726 Thiazole biosynthesis ThiH GO:0005506|GO:0009228|GO:0051539 KEGG: 00730+4.1.99.19|MetaCyc: PWY-6892 YP_3107 95c195ceb4cdc6416a0cad2ae4d2f1d1 381 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 264 366 1.3E-23 T 14-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 YP_3107 95c195ceb4cdc6416a0cad2ae4d2f1d1 381 Pfam PF04055 Radical SAM superfamily 88 225 2.4E-9 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YP_3107 95c195ceb4cdc6416a0cad2ae4d2f1d1 381 SUPERFAMILY SSF102114 43 369 1.44E-54 T 14-10-2018 YP_2625 5fe737d90ec261dffd4bff4a70f786fe 678 SMART SM00382 39 226 2.1E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2625 5fe737d90ec261dffd4bff4a70f786fe 678 Pfam PF02687 FtsX-like permease family 583 671 4.8E-9 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 YP_2625 5fe737d90ec261dffd4bff4a70f786fe 678 Gene3D G3DSA:3.40.50.300 8 297 3.3E-70 T 14-10-2018 YP_2625 5fe737d90ec261dffd4bff4a70f786fe 678 Pfam PF00005 ABC transporter 30 178 3.7E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2625 5fe737d90ec261dffd4bff4a70f786fe 678 Pfam PF12704 MacB-like periplasmic core domain 302 519 2.0E-38 T 14-10-2018 IPR025857 MacB-like periplasmic core domain YP_2625 5fe737d90ec261dffd4bff4a70f786fe 678 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2625 5fe737d90ec261dffd4bff4a70f786fe 678 SUPERFAMILY SSF52540 10 241 2.13E-69 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3909 e2c171b5e7c81246b05cb9d523a75a09 201 SUPERFAMILY SSF53697 17 190 1.32E-34 T 14-10-2018 YP_3909 e2c171b5e7c81246b05cb9d523a75a09 201 Pfam PF01380 SIS domain 40 169 7.3E-19 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YP_3909 e2c171b5e7c81246b05cb9d523a75a09 201 Gene3D G3DSA:3.40.50.10490 9 199 1.0E-47 T 14-10-2018 YP_2572 9634110dbe866cc868e57fea80c6788f 184 Gene3D G3DSA:2.60.40.1090 27 184 4.6E-27 T 14-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YP_2572 9634110dbe866cc868e57fea80c6788f 184 Pfam PF16970 Type-1 fimbrial protein, A 55 184 2.4E-12 T 14-10-2018 IPR039458 Type-1 fimbrial protein, A YP_2572 9634110dbe866cc868e57fea80c6788f 184 SUPERFAMILY SSF49401 30 184 4.47E-24 T 14-10-2018 IPR008966 Adhesion domain superfamily YP_1485 d561716defb0595357049051c5481b76 217 ProDom PD103779 CRCA ANTIMICROBIAL RESISTANCE LIPOPROTEIN RCP A PEPTIDE ACYLATION LIPID EXPORTED 72 208 1.0E-71 T 14-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP YP_1485 d561716defb0595357049051c5481b76 217 Hamap MF_00837 Lipid A palmitoyltransferase PagP [pagP]. 21 217 40.142 T 14-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP YP_1485 d561716defb0595357049051c5481b76 217 SUPERFAMILY SSF56925 62 217 1.26E-78 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_1485 d561716defb0595357049051c5481b76 217 Pfam PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP 72 217 7.8E-69 T 14-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP YP_1485 d561716defb0595357049051c5481b76 217 Gene3D G3DSA:2.40.160.20 61 217 5.3E-69 T 14-10-2018 YP_2110 53a5da3e930347aa81dd6d80e69d9368 201 Gene3D G3DSA:3.40.50.360 1 201 3.8E-67 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_2110 53a5da3e930347aa81dd6d80e69d9368 201 Pfam PF02525 Flavodoxin-like fold 3 195 2.6E-47 T 14-10-2018 IPR003680 Flavodoxin-like fold YP_2110 53a5da3e930347aa81dd6d80e69d9368 201 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 199 33.026 T 14-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 YP_2110 53a5da3e930347aa81dd6d80e69d9368 201 SUPERFAMILY SSF52218 1 199 1.36E-58 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_3915 1c9f88a28b90a5e0cdca3a8014a082d1 333 PIRSF PIRSF026649 30 333 1.2E-92 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 YP_3915 1c9f88a28b90a5e0cdca3a8014a082d1 333 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 33 324 1.9E-101 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 YP_3915 1c9f88a28b90a5e0cdca3a8014a082d1 333 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 31 333 50.425 T 14-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 YP_3915 1c9f88a28b90a5e0cdca3a8014a082d1 333 Hamap MF_01943 Lipid A biosynthesis palmitoleoyltransferase [lpxP]. 30 333 68.758 T 14-10-2018 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP GO:0008951|GO:0009409|GO:0036104 YP_3915 1c9f88a28b90a5e0cdca3a8014a082d1 333 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 33 333 3.9E-136 T 14-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 YP_0482 c18d17044bf384fa56004b2706f5f0b9 382 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 172 200 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 YP_0482 c18d17044bf384fa56004b2706f5f0b9 382 TIGRFAM TIGR02638 lactal_redase: lactaldehyde reductase 2 378 1.4E-171 T 14-10-2018 IPR013460 Lactaldehyde reductase KEGG: 00630+1.1.1.77|KEGG: 00640+1.1.1.77 YP_0482 c18d17044bf384fa56004b2706f5f0b9 382 SUPERFAMILY SSF56796 3 380 3.4E-121 T 14-10-2018 YP_0482 c18d17044bf384fa56004b2706f5f0b9 382 Gene3D G3DSA:1.20.1090.10 184 382 7.3E-69 T 14-10-2018 YP_0482 c18d17044bf384fa56004b2706f5f0b9 382 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 259 279 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 YP_0482 c18d17044bf384fa56004b2706f5f0b9 382 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 374 2.0E-116 T 14-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 YP_0482 c18d17044bf384fa56004b2706f5f0b9 382 Gene3D G3DSA:3.40.50.1970 1 183 5.6E-52 T 14-10-2018 YP_1894 4f9a4da33a91045c362033b3a2b9f65b 131 Pfam PF01124 MAPEG family 4 120 2.8E-24 T 14-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein YP_1894 4f9a4da33a91045c362033b3a2b9f65b 131 Gene3D G3DSA:1.20.120.550 1 128 8.4E-25 T 14-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily YP_1894 4f9a4da33a91045c362033b3a2b9f65b 131 SUPERFAMILY SSF161084 4 125 8.11E-30 T 14-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily YP_0271 347486e69c2ebdd22498eedb5f303f15 119 ProDom PD020773 UPF0231 YACL UNCHARACTERISED UCP006287 VC0605 UNCHARACTERIZED 3'REGION VV2750 BCR OXIDASE 1 117 4.0E-63 T 14-10-2018 IPR008249 Uncharacterised protein family UPF0231 YP_0271 347486e69c2ebdd22498eedb5f303f15 119 Hamap MF_01053 UPF0231 protein YacL [yacL]. 1 119 29.976 T 14-10-2018 IPR008249 Uncharacterised protein family UPF0231 YP_0271 347486e69c2ebdd22498eedb5f303f15 119 Pfam PF06062 Uncharacterised protein family (UPF0231) 1 117 5.0E-44 T 14-10-2018 IPR008249 Uncharacterised protein family UPF0231 YP_0271 347486e69c2ebdd22498eedb5f303f15 119 PIRSF PIRSF006287 1 119 4.2E-50 T 14-10-2018 IPR008249 Uncharacterised protein family UPF0231 YP_3066 328851187847c7673e82c6aca08887de 146 SUPERFAMILY SSF160719 30 137 5.23E-17 T 14-10-2018 YP_3066 328851187847c7673e82c6aca08887de 146 Gene3D G3DSA:3.10.450.40 23 139 7.7E-7 T 14-10-2018 YP_3066 328851187847c7673e82c6aca08887de 146 Pfam PF04965 Gene 25-like lysozyme 34 120 1.6E-17 T 14-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD YP_3066 328851187847c7673e82c6aca08887de 146 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 13 141 2.6E-38 T 14-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein YP_0582 d6cc1da71c61caf14d8e664007af4c1d 277 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 16 271 3.0E-102 T 14-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 YP_0582 d6cc1da71c61caf14d8e664007af4c1d 277 Pfam PF00809 Pterin binding enzyme 18 257 3.5E-89 T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_0582 d6cc1da71c61caf14d8e664007af4c1d 277 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 17 32 - T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_0582 d6cc1da71c61caf14d8e664007af4c1d 277 SUPERFAMILY SSF51717 5 274 6.54E-106 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_0582 d6cc1da71c61caf14d8e664007af4c1d 277 Gene3D G3DSA:3.20.20.20 1 277 8.3E-113 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_0582 d6cc1da71c61caf14d8e664007af4c1d 277 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 51 64 - T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YP_2929 b92eba070075244a2a90631c49a7b8d1 328 SUPERFAMILY SSF47413 3 60 5.35E-17 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_2929 b92eba070075244a2a90631c49a7b8d1 328 Pfam PF13377 Periplasmic binding protein-like domain 167 327 8.8E-35 T 14-10-2018 YP_2929 b92eba070075244a2a90631c49a7b8d1 328 SUPERFAMILY SSF53822 63 327 5.65E-72 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_2929 b92eba070075244a2a90631c49a7b8d1 328 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 14-10-2018 YP_2929 b92eba070075244a2a90631c49a7b8d1 328 Gene3D G3DSA:3.40.50.2300 159 288 2.4E-73 T 14-10-2018 YP_2929 b92eba070075244a2a90631c49a7b8d1 328 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 1.2E-17 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2929 b92eba070075244a2a90631c49a7b8d1 328 Gene3D G3DSA:1.10.260.40 2 60 4.4E-21 T 14-10-2018 YP_2929 b92eba070075244a2a90631c49a7b8d1 328 SMART SM00354 2 72 1.0E-23 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2929 b92eba070075244a2a90631c49a7b8d1 328 Gene3D G3DSA:3.40.50.2300 62 307 2.4E-73 T 14-10-2018 YP_1923 237dadbe122640e0e1b2bca9c57ad6ee 90 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 1 83 1.0E-42 T 14-10-2018 IPR027354 YcgL domain YP_1923 237dadbe122640e0e1b2bca9c57ad6ee 90 SUPERFAMILY SSF160191 1 87 1.57E-38 T 14-10-2018 IPR038068 YcgL-like superfamily YP_1923 237dadbe122640e0e1b2bca9c57ad6ee 90 Pfam PF05166 YcgL domain 3 75 1.7E-33 T 14-10-2018 IPR027354 YcgL domain YP_1923 237dadbe122640e0e1b2bca9c57ad6ee 90 Hamap MF_01866 Protein YcgL [ycgL]. 1 88 27.625 T 14-10-2018 IPR027354 YcgL domain YP_1923 237dadbe122640e0e1b2bca9c57ad6ee 90 Gene3D G3DSA:3.10.510.20 1 74 1.4E-31 T 14-10-2018 IPR038068 YcgL-like superfamily YP_0274 a682b5c2e476adb834376cd0b0050cd7 324 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 34 312 39.327 T 14-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 YP_0274 a682b5c2e476adb834376cd0b0050cd7 324 Pfam PF17284 Spermidine synthase tetramerisation domain 34 85 1.1E-17 T 14-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 YP_0274 a682b5c2e476adb834376cd0b0050cd7 324 Gene3D G3DSA:2.30.140.10 25 82 3.9E-26 T 14-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 YP_0274 a682b5c2e476adb834376cd0b0050cd7 324 TIGRFAM TIGR00417 speE: spermidine synthase 35 306 5.8E-116 T 14-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 YP_0274 a682b5c2e476adb834376cd0b0050cd7 324 Gene3D G3DSA:3.40.50.150 83 315 2.1E-80 T 14-10-2018 YP_0274 a682b5c2e476adb834376cd0b0050cd7 324 SUPERFAMILY SSF53335 34 311 1.21E-88 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0274 a682b5c2e476adb834376cd0b0050cd7 324 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 109 122 - T 14-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 YP_0274 a682b5c2e476adb834376cd0b0050cd7 324 Pfam PF01564 Spermine/spermidine synthase domain 88 268 7.4E-67 T 14-10-2018 YP_2228 379838de1622bbfd1edf1f50031b71fd 296 SMART SM00382 36 222 9.5E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2228 379838de1622bbfd1edf1f50031b71fd 296 Pfam PF00005 ABC transporter 29 174 4.7E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2228 379838de1622bbfd1edf1f50031b71fd 296 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2228 379838de1622bbfd1edf1f50031b71fd 296 SUPERFAMILY SSF52540 5 237 6.25E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2228 379838de1622bbfd1edf1f50031b71fd 296 Gene3D G3DSA:3.40.50.300 9 249 2.7E-58 T 14-10-2018 YP_1879 518ed1a14091fbd39986650314a2f871 384 Gene3D G3DSA:3.30.420.40 105 219 2.9E-31 T 14-10-2018 YP_1879 518ed1a14091fbd39986650314a2f871 384 SUPERFAMILY SSF46785 26 90 1.85E-11 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1879 518ed1a14091fbd39986650314a2f871 384 Gene3D G3DSA:3.30.420.40 291 360 1.8E-5 T 14-10-2018 YP_1879 518ed1a14091fbd39986650314a2f871 384 Gene3D G3DSA:3.30.420.40 220 257 2.9E-31 T 14-10-2018 YP_1879 518ed1a14091fbd39986650314a2f871 384 Pfam PF00480 ROK family 108 256 7.5E-18 T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YP_1879 518ed1a14091fbd39986650314a2f871 384 Gene3D G3DSA:3.30.420.40 361 373 1.8E-5 T 14-10-2018 YP_1879 518ed1a14091fbd39986650314a2f871 384 Pfam PF13412 Winged helix-turn-helix DNA-binding 27 70 3.0E-5 T 14-10-2018 YP_1879 518ed1a14091fbd39986650314a2f871 384 SUPERFAMILY SSF53067 95 379 6.76E-32 T 14-10-2018 YP_1879 518ed1a14091fbd39986650314a2f871 384 Gene3D G3DSA:1.10.10.10 19 90 1.7E-14 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2442 b64b0c5a8a66a620be249c5b7f6e2cb6 1192 SUPERFAMILY SSF52540 101 275 2.5E-7 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2442 b64b0c5a8a66a620be249c5b7f6e2cb6 1192 Pfam PF06744 Type VI secretion protein IcmF C-terminal 941 1132 3.5E-45 T 14-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal YP_2442 b64b0c5a8a66a620be249c5b7f6e2cb6 1192 Pfam PF14331 ImcF-related N-terminal domain 170 452 5.9E-75 T 14-10-2018 IPR025743 ImcF-related, N-terminal domain YP_2442 b64b0c5a8a66a620be249c5b7f6e2cb6 1192 Pfam PF06761 Intracellular multiplication and human macrophage-killing 503 815 1.6E-68 T 14-10-2018 IPR009612 ImcF-related YP_2442 b64b0c5a8a66a620be249c5b7f6e2cb6 1192 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 1 1184 1.2E-238 T 14-10-2018 IPR017731 Type VI secretion system, IcmF YP_3475 00f0d392fcdf4e8e25f051fc09c965ca 765 SUPERFAMILY SSF53955 503 657 9.84E-10 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_3475 00f0d392fcdf4e8e25f051fc09c965ca 765 Gene3D G3DSA:2.70.70.10 22 164 6.4E-13 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_3475 00f0d392fcdf4e8e25f051fc09c965ca 765 Pfam PF01551 Peptidase family M23 42 155 4.2E-6 T 14-10-2018 IPR016047 Peptidase M23 YP_3475 00f0d392fcdf4e8e25f051fc09c965ca 765 SUPERFAMILY SSF51261 31 158 1.2E-6 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_2846 51918b87cc7df10333d212736aa5b8da 205 Pfam PF07963 Prokaryotic N-terminal methylation motif 11 36 8.7E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site YP_2846 51918b87cc7df10333d212736aa5b8da 205 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 15 203 5.6E-30 T 14-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 YP_2846 51918b87cc7df10333d212736aa5b8da 205 Gene3D G3DSA:3.10.610.10 46 156 5.5E-7 T 14-10-2018 YP_2846 51918b87cc7df10333d212736aa5b8da 205 Gene3D G3DSA:2.10.70.20 158 205 2.8E-7 T 14-10-2018 YP_2846 51918b87cc7df10333d212736aa5b8da 205 SUPERFAMILY SSF54523 54 204 4.92E-34 T 14-10-2018 YP_2846 51918b87cc7df10333d212736aa5b8da 205 Pfam PF11612 Type II secretion system (T2SS), protein J 66 200 2.6E-21 T 14-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 YP_2846 51918b87cc7df10333d212736aa5b8da 205 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 14 35 8.1E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site YP_1586 62de33f264b731dbbcd39968341644e9 314 Pfam PF10135 Rod binding protein 49 95 2.5E-16 T 14-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal YP_1586 62de33f264b731dbbcd39968341644e9 314 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 161 295 3.1E-20 T 14-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 YP_1586 62de33f264b731dbbcd39968341644e9 314 Gene3D G3DSA:2.10.70.40 186 238 5.5E-46 T 14-10-2018 YP_1586 62de33f264b731dbbcd39968341644e9 314 SMART SM00047 140 306 1.6E-42 T 14-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 YP_1586 62de33f264b731dbbcd39968341644e9 314 Gene3D G3DSA:1.10.530.10 152 291 5.5E-46 T 14-10-2018 YP_1586 62de33f264b731dbbcd39968341644e9 314 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 11 295 1.7E-107 T 14-10-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 YP_1586 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 213 234 5.8E-99 T 14-10-2018 YP_1586 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 257 276 5.8E-99 T 14-10-2018 YP_1586 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 235 256 5.8E-99 T 14-10-2018 YP_1586 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 147 170 5.8E-99 T 14-10-2018 YP_1586 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 27 50 5.8E-99 T 14-10-2018 YP_1586 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 52 72 5.8E-99 T 14-10-2018 YP_1586 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 171 189 5.8E-99 T 14-10-2018 YP_1586 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 5 25 5.8E-99 T 14-10-2018 YP_1586 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 191 212 5.8E-99 T 14-10-2018 YP_1586 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 110 135 5.8E-99 T 14-10-2018 YP_1586 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 277 295 5.8E-99 T 14-10-2018 YP_3693 794d6c880217e31ee86c274376a58450 160 PRINTS PR00070 Dihydrofolate reductase signature 41 52 1.1E-14 T 14-10-2018 YP_3693 794d6c880217e31ee86c274376a58450 160 PRINTS PR00070 Dihydrofolate reductase signature 14 24 1.1E-14 T 14-10-2018 YP_3693 794d6c880217e31ee86c274376a58450 160 PRINTS PR00070 Dihydrofolate reductase signature 28 36 1.1E-14 T 14-10-2018 YP_3693 794d6c880217e31ee86c274376a58450 160 PRINTS PR00070 Dihydrofolate reductase signature 91 105 1.1E-14 T 14-10-2018 YP_3693 794d6c880217e31ee86c274376a58450 160 Gene3D G3DSA:3.40.430.10 1 160 1.3E-59 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 YP_3693 794d6c880217e31ee86c274376a58450 160 PIRSF PIRSF000194 1 160 1.3E-58 T 14-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 YP_3693 794d6c880217e31ee86c274376a58450 160 SUPERFAMILY SSF53597 1 160 1.44E-57 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 YP_3693 794d6c880217e31ee86c274376a58450 160 Pfam PF00186 Dihydrofolate reductase 3 159 6.1E-59 T 14-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 YP_3693 794d6c880217e31ee86c274376a58450 160 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 14 36 - T 14-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 YP_3073 1976092441afb4873639607f0457f5df 434 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 42 429 0.0 T 14-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 YP_3073 1976092441afb4873639607f0457f5df 434 Pfam PF02264 LamB porin 38 434 5.0E-144 T 14-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 YP_3073 1976092441afb4873639607f0457f5df 434 SUPERFAMILY SSF56935 36 434 1.89E-147 T 14-10-2018 YP_3073 1976092441afb4873639607f0457f5df 434 Gene3D G3DSA:2.40.170.10 36 434 3.4E-170 T 14-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 YP_3073 1976092441afb4873639607f0457f5df 434 Hamap MF_01301 Maltoporin [lamB]. 14 434 42.99 T 14-10-2018 IPR023738 Maltoporin GO:0009279|GO:0015481|GO:0015768|GO:0042956|GO:0042958 YP_1216 ec534d7beadbcc60601904905e710319 189 Gene3D G3DSA:2.50.20.10 7 189 6.9E-54 T 14-10-2018 YP_1216 ec534d7beadbcc60601904905e710319 189 SUPERFAMILY SSF89392 10 189 7.06E-56 T 14-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX YP_1216 ec534d7beadbcc60601904905e710319 189 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 19 178 6.6E-58 T 14-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like YP_1216 ec534d7beadbcc60601904905e710319 189 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 2 189 3.1E-94 T 14-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 YP_1216 ec534d7beadbcc60601904905e710319 189 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 2 188 31.493 T 14-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 YP_3036 d23380d8e14f3b540dc2b31d765ef4e9 218 Gene3D G3DSA:2.60.40.4070 102 181 1.5E-18 T 14-10-2018 YP_3036 d23380d8e14f3b540dc2b31d765ef4e9 218 Gene3D G3DSA:2.30.30.910 91 213 1.5E-18 T 14-10-2018 YP_3036 d23380d8e14f3b540dc2b31d765ef4e9 218 Pfam PF03963 Flagellar hook capping protein - N-terminal region 21 76 3.4E-18 T 14-10-2018 IPR005648 Flagellar hook capping protein YP_3036 d23380d8e14f3b540dc2b31d765ef4e9 218 Pfam PF13861 FlgD Tudor-like domain 85 214 6.3E-12 T 14-10-2018 IPR025963 FlgD Tudor-like domain YP_3036 d23380d8e14f3b540dc2b31d765ef4e9 218 Pfam PF13860 FlgD Ig-like domain 108 172 8.3E-10 T 14-10-2018 IPR025965 FlgD Ig-like domain YP_1874 ac9ace51bea95333ab157c10f119dcb7 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 262 1.3E-14 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1874 ac9ace51bea95333ab157c10f119dcb7 278 SUPERFAMILY SSF161098 8 270 1.83E-53 T 14-10-2018 IPR035906 MetI-like superfamily YP_1874 ac9ace51bea95333ab157c10f119dcb7 278 Gene3D G3DSA:1.10.3720.10 3 264 7.1E-45 T 14-10-2018 IPR035906 MetI-like superfamily YP_1334 f44389c162cc3e13908046abf71ae7b4 138 SMART SM00881 10 104 7.1E-24 T 14-10-2018 IPR003781 CoA-binding GO:0048037 YP_1334 f44389c162cc3e13908046abf71ae7b4 138 SUPERFAMILY SSF51735 2 135 7.09E-42 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1334 f44389c162cc3e13908046abf71ae7b4 138 Pfam PF13380 CoA binding domain 14 130 5.1E-37 T 14-10-2018 IPR003781 CoA-binding GO:0048037 YP_1334 f44389c162cc3e13908046abf71ae7b4 138 Gene3D G3DSA:3.40.50.720 1 138 1.3E-39 T 14-10-2018 YP_3681 59c5d1d278d4da5a6f6e6a04169a79ea 247 Pfam PF10074 Uncharacterized conserved protein (DUF2285) 184 247 7.4E-11 T 14-10-2018 IPR018754 Protein of unknown function DUF2285 YP_0528 0f71988613898b52bcfef47594a34422 313 SUPERFAMILY SSF52540 13 155 1.19E-17 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0528 0f71988613898b52bcfef47594a34422 313 Pfam PF01715 IPP transferase 46 291 6.4E-84 T 14-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 YP_0528 0f71988613898b52bcfef47594a34422 313 Gene3D G3DSA:1.10.20.140 119 190 7.6E-104 T 14-10-2018 YP_0528 0f71988613898b52bcfef47594a34422 313 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 12 299 1.0E-119 T 14-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 YP_0528 0f71988613898b52bcfef47594a34422 313 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 12 312 29.522 T 14-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 YP_0528 0f71988613898b52bcfef47594a34422 313 Gene3D G3DSA:3.40.50.300 16 296 7.6E-104 T 14-10-2018 YP_2769 056469338fb23e76f5e42acc31aae2a3 239 Gene3D G3DSA:3.40.50.150 52 181 3.8E-12 T 14-10-2018 YP_2769 056469338fb23e76f5e42acc31aae2a3 239 Pfam PF08241 Methyltransferase domain 77 125 1.1E-8 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 YP_2769 056469338fb23e76f5e42acc31aae2a3 239 SUPERFAMILY SSF53335 77 182 2.87E-15 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1081 875cfb8ef04feab2a7e2ed402bed095e 148 Gene3D G3DSA:1.10.10.10 1 83 1.1E-32 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1081 875cfb8ef04feab2a7e2ed402bed095e 148 SUPERFAMILY SSF46785 5 134 4.6E-44 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1081 875cfb8ef04feab2a7e2ed402bed095e 148 Gene3D G3DSA:3.30.1490.190 85 143 3.1E-24 T 14-10-2018 YP_1081 875cfb8ef04feab2a7e2ed402bed095e 148 Pfam PF01475 Ferric uptake regulator family 11 130 1.4E-46 T 14-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 YP_3512 6093ff1ad56a9cf5b044827069cdcb18 384 SUPERFAMILY SSF55973 111 232 3.49E-52 T 14-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YP_3512 6093ff1ad56a9cf5b044827069cdcb18 384 SUPERFAMILY SSF55973 3 109 1.06E-47 T 14-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YP_3512 6093ff1ad56a9cf5b044827069cdcb18 384 Gene3D G3DSA:3.30.300.10 103 372 2.1E-180 T 14-10-2018 YP_3512 6093ff1ad56a9cf5b044827069cdcb18 384 Pfam PF02772 S-adenosylmethionine synthetase, central domain 114 231 1.2E-45 T 14-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YP_3512 6093ff1ad56a9cf5b044827069cdcb18 384 Gene3D G3DSA:3.30.300.10 11 270 2.1E-180 T 14-10-2018 YP_3512 6093ff1ad56a9cf5b044827069cdcb18 384 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 5 380 1.7E-199 T 14-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YP_3512 6093ff1ad56a9cf5b044827069cdcb18 384 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 259 267 - T 14-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YP_3512 6093ff1ad56a9cf5b044827069cdcb18 384 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 2 381 59.731 T 14-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YP_3512 6093ff1ad56a9cf5b044827069cdcb18 384 Gene3D G3DSA:3.30.300.10 5 233 2.1E-180 T 14-10-2018 YP_3512 6093ff1ad56a9cf5b044827069cdcb18 384 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 233 370 4.0E-69 T 14-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YP_3512 6093ff1ad56a9cf5b044827069cdcb18 384 SUPERFAMILY SSF55973 233 382 7.46E-71 T 14-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YP_3512 6093ff1ad56a9cf5b044827069cdcb18 384 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 101 4.6E-43 T 14-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YP_3512 6093ff1ad56a9cf5b044827069cdcb18 384 PIRSF PIRSF000497 1 381 3.4E-175 T 14-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YP_3512 6093ff1ad56a9cf5b044827069cdcb18 384 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 116 126 - T 14-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YP_0184 bd5ea121078ea065bab5c8c34251d46a 288 SUPERFAMILY SSF51197 13 287 4.35E-94 T 14-10-2018 YP_0184 bd5ea121078ea065bab5c8c34251d46a 288 Gene3D G3DSA:3.60.130.10 7 288 2.1E-97 T 14-10-2018 YP_0184 bd5ea121078ea065bab5c8c34251d46a 288 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 13 278 9.4E-65 T 14-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 YP_3769 c476941422126c2774cb6107a64d2f2f 550 ProSitePatterns PS00211 ABC transporters family signature. 430 444 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3769 c476941422126c2774cb6107a64d2f2f 550 Gene3D G3DSA:3.40.50.300 279 522 2.7E-41 T 14-10-2018 YP_3769 c476941422126c2774cb6107a64d2f2f 550 Pfam PF00005 ABC transporter 50 192 2.4E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3769 c476941422126c2774cb6107a64d2f2f 550 Gene3D G3DSA:3.40.50.300 31 261 1.8E-56 T 14-10-2018 YP_3769 c476941422126c2774cb6107a64d2f2f 550 SUPERFAMILY SSF52540 305 507 2.54E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3769 c476941422126c2774cb6107a64d2f2f 550 SMART SM00382 314 506 2.8E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3769 c476941422126c2774cb6107a64d2f2f 550 SMART SM00382 59 243 1.6E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3769 c476941422126c2774cb6107a64d2f2f 550 SUPERFAMILY SSF52540 33 251 1.17E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3769 c476941422126c2774cb6107a64d2f2f 550 Pfam PF00005 ABC transporter 307 457 8.4E-18 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2222 d5ce5a01af607ab6f54f1ace5673e1e4 70 Pfam PF13619 KTSC domain 7 64 5.1E-24 T 14-10-2018 IPR025309 KTSC domain YP_2678 02128e2cc8aed5eac292a39a289ec5ad 699 Gene3D G3DSA:1.20.120.890 544 682 3.9E-50 T 14-10-2018 IPR038321 TmcA, C-terminal domain superfamily YP_2678 02128e2cc8aed5eac292a39a289ec5ad 699 Gene3D G3DSA:3.40.50.11040 3 189 4.8E-66 T 14-10-2018 YP_2678 02128e2cc8aed5eac292a39a289ec5ad 699 SUPERFAMILY SSF55729 360 526 4.85E-13 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_2678 02128e2cc8aed5eac292a39a289ec5ad 699 SUPERFAMILY SSF52540 171 286 1.17E-7 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2678 02128e2cc8aed5eac292a39a289ec5ad 699 Pfam PF05127 Helicase 195 340 3.0E-38 T 14-10-2018 IPR007807 Helicase domain Reactome: R-HSA-6790901 YP_2678 02128e2cc8aed5eac292a39a289ec5ad 699 Pfam PF08351 Domain of unknown function (DUF1726) 64 147 2.3E-6 T 14-10-2018 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal Reactome: R-HSA-6790901 YP_2678 02128e2cc8aed5eac292a39a289ec5ad 699 Gene3D G3DSA:3.40.50.12320 191 331 1.0E-48 T 14-10-2018 YP_2678 02128e2cc8aed5eac292a39a289ec5ad 699 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 16 668 50.402 T 14-10-2018 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 YP_2678 02128e2cc8aed5eac292a39a289ec5ad 699 Pfam PF13718 GNAT acetyltransferase 2 380 488 1.1E-11 T 14-10-2018 IPR000182 GNAT domain YP_2678 02128e2cc8aed5eac292a39a289ec5ad 699 Pfam PF13718 GNAT acetyltransferase 2 490 545 3.7E-8 T 14-10-2018 IPR000182 GNAT domain YP_2678 02128e2cc8aed5eac292a39a289ec5ad 699 Gene3D G3DSA:3.40.630.30 334 543 2.3E-70 T 14-10-2018 YP_2678 02128e2cc8aed5eac292a39a289ec5ad 699 Pfam PF17176 tRNA-binding domain 549 669 1.3E-43 T 14-10-2018 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain YP_1417 d515a03222bda5c65b69c76f3487f162 259 TIGRFAM TIGR03951 Fe_III_red_FhuF: siderophore-iron reductase FhuF 77 251 4.0E-66 T 14-10-2018 IPR008090 Ferric iron reductase YP_1417 d515a03222bda5c65b69c76f3487f162 259 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 230 250 1.1E-6 T 14-10-2018 IPR024726 Ferric iron reductase, C-terminal GO:0051537 YP_1417 d515a03222bda5c65b69c76f3487f162 259 Pfam PF06276 Ferric iron reductase FhuF-like transporter 83 226 6.2E-27 T 14-10-2018 IPR022770 Ferric iron reductase FhuF domain YP_1417 d515a03222bda5c65b69c76f3487f162 259 PRINTS PR01714 Ferric iron reductase signature 230 248 2.4E-45 T 14-10-2018 IPR008090 Ferric iron reductase YP_1417 d515a03222bda5c65b69c76f3487f162 259 PRINTS PR01714 Ferric iron reductase signature 6 22 2.4E-45 T 14-10-2018 IPR008090 Ferric iron reductase YP_1417 d515a03222bda5c65b69c76f3487f162 259 PRINTS PR01714 Ferric iron reductase signature 186 201 2.4E-45 T 14-10-2018 IPR008090 Ferric iron reductase YP_1417 d515a03222bda5c65b69c76f3487f162 259 PRINTS PR01714 Ferric iron reductase signature 47 64 2.4E-45 T 14-10-2018 IPR008090 Ferric iron reductase YP_1417 d515a03222bda5c65b69c76f3487f162 259 PRINTS PR01714 Ferric iron reductase signature 115 129 2.4E-45 T 14-10-2018 IPR008090 Ferric iron reductase YP_1417 d515a03222bda5c65b69c76f3487f162 259 PRINTS PR01714 Ferric iron reductase signature 162 178 2.4E-45 T 14-10-2018 IPR008090 Ferric iron reductase YP_1417 d515a03222bda5c65b69c76f3487f162 259 PRINTS PR01714 Ferric iron reductase signature 83 98 2.4E-45 T 14-10-2018 IPR008090 Ferric iron reductase YP_1417 d515a03222bda5c65b69c76f3487f162 259 PRINTS PR01714 Ferric iron reductase signature 204 220 2.4E-45 T 14-10-2018 IPR008090 Ferric iron reductase YP_1863 ce6cdda323ba02b2089d00f6a92dd79f 207 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 8 205 1.3E-74 T 14-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 YP_1863 ce6cdda323ba02b2089d00f6a92dd79f 207 Pfam PF03550 Outer membrane lipoprotein LolB 51 204 2.5E-47 T 14-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 YP_1863 ce6cdda323ba02b2089d00f6a92dd79f 207 SUPERFAMILY SSF89392 34 206 6.28E-56 T 14-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX YP_1863 ce6cdda323ba02b2089d00f6a92dd79f 207 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 6 206 30.098 T 14-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 YP_1863 ce6cdda323ba02b2089d00f6a92dd79f 207 Gene3D G3DSA:2.50.20.10 30 207 1.0E-60 T 14-10-2018 YP_0511 9e935ec720447b7332bf5aa1ffd8dea5 153 Gene3D G3DSA:1.10.3730.20 49 153 1.3E-32 T 14-10-2018 YP_0511 9e935ec720447b7332bf5aa1ffd8dea5 153 SUPERFAMILY SSF103481 54 152 7.06E-21 T 14-10-2018 YP_0511 9e935ec720447b7332bf5aa1ffd8dea5 153 Pfam PF00893 Small Multidrug Resistance protein 50 142 3.9E-32 T 14-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 YP_0879 c3e5f6f6fdd9906953feb70413b94900 334 Pfam PF04245 37-kD nucleoid-associated bacterial protein 10 324 5.9E-98 T 14-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 YP_0879 c3e5f6f6fdd9906953feb70413b94900 334 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 3 330 45.232 T 14-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 YP_3689 02f7c4efabb47489864b000aa6548b27 289 SUPERFAMILY SSF56300 1 258 9.72E-58 T 14-10-2018 YP_3689 02f7c4efabb47489864b000aa6548b27 289 PIRSF PIRSF000903 1 275 1.4E-121 T 14-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 YP_3689 02f7c4efabb47489864b000aa6548b27 289 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 271 51.457 T 14-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 YP_3689 02f7c4efabb47489864b000aa6548b27 289 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 275 3.3E-148 T 14-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 YP_3689 02f7c4efabb47489864b000aa6548b27 289 Gene3D G3DSA:3.60.21.10 1 279 1.5E-82 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like YP_3689 02f7c4efabb47489864b000aa6548b27 289 Pfam PF00149 Calcineurin-like phosphoesterase 2 127 4.4E-14 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 YP_0599 d43cb9a33a49a564c66e2d78abb50179 351 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 20 340 1.1E-137 T 14-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 YP_0599 d43cb9a33a49a564c66e2d78abb50179 351 Pfam PF00296 Luciferase-like monooxygenase 34 255 2.0E-29 T 14-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 YP_0599 d43cb9a33a49a564c66e2d78abb50179 351 Gene3D G3DSA:3.20.20.30 14 343 4.7E-96 T 14-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 YP_0599 d43cb9a33a49a564c66e2d78abb50179 351 SUPERFAMILY SSF51679 19 340 3.53E-82 T 14-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 YP_1300 cd67fbdbecd7cd0ad32703348f73694f 523 PIRSF PIRSF000538 1 519 2.5E-141 T 14-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YP_1300 cd67fbdbecd7cd0ad32703348f73694f 523 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 246 2.9E-62 T 14-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YP_1300 cd67fbdbecd7cd0ad32703348f73694f 523 Gene3D G3DSA:3.30.420.40 248 515 3.2E-80 T 14-10-2018 YP_1300 cd67fbdbecd7cd0ad32703348f73694f 523 Gene3D G3DSA:3.30.420.40 1 237 6.1E-79 T 14-10-2018 YP_1300 cd67fbdbecd7cd0ad32703348f73694f 523 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 378 398 - T 14-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YP_1300 cd67fbdbecd7cd0ad32703348f73694f 523 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 131 143 - T 14-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YP_1300 cd67fbdbecd7cd0ad32703348f73694f 523 SUPERFAMILY SSF53067 248 512 5.02E-61 T 14-10-2018 YP_1300 cd67fbdbecd7cd0ad32703348f73694f 523 SUPERFAMILY SSF53067 4 249 8.05E-69 T 14-10-2018 YP_1300 cd67fbdbecd7cd0ad32703348f73694f 523 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 257 466 1.5E-30 T 14-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YP_0373 6929a733605e7d76e14bf7523e868cb6 314 SMART SM00861 1 171 7.2E-30 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain YP_0373 6929a733605e7d76e14bf7523e868cb6 314 Pfam PF02780 Transketolase, C-terminal domain 181 303 4.5E-29 T 14-10-2018 IPR033248 Transketolase, C-terminal domain YP_0373 6929a733605e7d76e14bf7523e868cb6 314 SUPERFAMILY SSF52518 6 173 3.93E-37 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold YP_0373 6929a733605e7d76e14bf7523e868cb6 314 SUPERFAMILY SSF52922 176 311 1.2E-31 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YP_0373 6929a733605e7d76e14bf7523e868cb6 314 Gene3D G3DSA:3.40.50.970 3 176 3.1E-43 T 14-10-2018 YP_0373 6929a733605e7d76e14bf7523e868cb6 314 Pfam PF02779 Transketolase, pyrimidine binding domain 44 167 2.2E-18 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain YP_0373 6929a733605e7d76e14bf7523e868cb6 314 Gene3D G3DSA:3.40.50.920 181 313 4.4E-34 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YP_1482 06be050030ade4d14f88e674e8c99b61 99 Pfam PF10765 Protein of unknown function (DUF2591) 29 97 5.2E-14 T 14-10-2018 IPR019701 Bacteriophage P22, NinX YP_3271 239e3e2d3e7ab9d5eabbb903875c264c 88 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 86 23.003 T 14-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 YP_3271 239e3e2d3e7ab9d5eabbb903875c264c 88 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 2.7E-20 T 14-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 YP_3271 239e3e2d3e7ab9d5eabbb903875c264c 88 Pfam PF02416 mttA/Hcf106 family 4 56 3.4E-12 T 14-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 YP_1634 9cf3dfc8a32012190d2b6e00f1fa7035 302 SUPERFAMILY SSF52728 141 300 1.07E-56 T 14-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 YP_1634 9cf3dfc8a32012190d2b6e00f1fa7035 302 TIGRFAM TIGR00824 EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component 1 94 2.2E-35 T 14-10-2018 IPR013789 Phosphotransferase system, mannose family IIA component GO:0005737|GO:0008643|GO:0016773 YP_1634 9cf3dfc8a32012190d2b6e00f1fa7035 302 Pfam PF03830 PTS system sorbose subfamily IIB component 143 289 6.5E-57 T 14-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 YP_1634 9cf3dfc8a32012190d2b6e00f1fa7035 302 Pfam PF03610 PTS system fructose IIA component 1 94 4.7E-25 T 14-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 YP_1634 9cf3dfc8a32012190d2b6e00f1fa7035 302 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 143 289 4.4E-58 T 14-10-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 YP_1634 9cf3dfc8a32012190d2b6e00f1fa7035 302 SUPERFAMILY SSF53062 1 106 4.06E-29 T 14-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 YP_1634 9cf3dfc8a32012190d2b6e00f1fa7035 302 Gene3D G3DSA:3.40.35.10 138 302 4.8E-62 T 14-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 YP_1634 9cf3dfc8a32012190d2b6e00f1fa7035 302 Gene3D G3DSA:3.40.50.510 1 112 3.9E-32 T 14-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 YP_3546 2bba5c447f4ea652bda572a6c0901515 382 Gene3D G3DSA:3.40.50.2300 189 351 1.2E-64 T 14-10-2018 YP_3546 2bba5c447f4ea652bda572a6c0901515 382 Pfam PF00356 Bacterial regulatory proteins, lacI family 32 77 2.6E-18 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_3546 2bba5c447f4ea652bda572a6c0901515 382 SMART SM00354 30 100 2.1E-26 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_3546 2bba5c447f4ea652bda572a6c0901515 382 Gene3D G3DSA:1.10.260.40 28 89 1.4E-23 T 14-10-2018 YP_3546 2bba5c447f4ea652bda572a6c0901515 382 ProSitePatterns PS00356 LacI-type HTH domain signature. 33 51 - T 14-10-2018 YP_3546 2bba5c447f4ea652bda572a6c0901515 382 Pfam PF13377 Periplasmic binding protein-like domain 198 356 3.7E-32 T 14-10-2018 YP_3546 2bba5c447f4ea652bda572a6c0901515 382 SUPERFAMILY SSF47413 30 88 4.22E-17 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_3546 2bba5c447f4ea652bda572a6c0901515 382 SUPERFAMILY SSF53822 87 350 6.92E-51 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_3546 2bba5c447f4ea652bda572a6c0901515 382 Gene3D G3DSA:3.40.50.2300 105 347 1.2E-64 T 14-10-2018 YP_3546 2bba5c447f4ea652bda572a6c0901515 382 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 42 52 1.4E-5 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_3546 2bba5c447f4ea652bda572a6c0901515 382 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 32 42 1.4E-5 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_3910 c0180c8f2c558e4fe09be0d098d41646 550 SUPERFAMILY SSF53067 9 268 2.95E-60 T 14-10-2018 YP_3910 c0180c8f2c558e4fe09be0d098d41646 550 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 9 267 1.7E-30 T 14-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YP_3910 c0180c8f2c558e4fe09be0d098d41646 550 SUPERFAMILY SSF53067 285 537 4.24E-56 T 14-10-2018 YP_3910 c0180c8f2c558e4fe09be0d098d41646 550 Gene3D G3DSA:3.30.420.40 10 518 1.1E-227 T 14-10-2018 YP_3910 c0180c8f2c558e4fe09be0d098d41646 550 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 287 494 2.8E-40 T 14-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YP_3910 c0180c8f2c558e4fe09be0d098d41646 550 PIRSF PIRSF000538 7 547 1.0E-76 T 14-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YP_3910 c0180c8f2c558e4fe09be0d098d41646 550 Gene3D G3DSA:3.30.420.460 328 530 1.1E-227 T 14-10-2018 YP_3910 c0180c8f2c558e4fe09be0d098d41646 550 TIGRFAM TIGR01315 5C_CHO_kinase: FGGY-family pentulose kinase 10 542 2.6E-209 T 14-10-2018 IPR006003 FGGY carbohydrate kinase, pentulose kinase GO:0005975|GO:0016773 YP_0083 5ec3dca28eee6311c9d0a5abac553886 475 PIRSF PIRSF002457 1 474 3.0E-131 T 14-10-2018 IPR030676 Citrate carrier CitT-related YP_0083 5ec3dca28eee6311c9d0a5abac553886 475 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 23 468 1.5E-131 T 14-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 YP_0083 5ec3dca28eee6311c9d0a5abac553886 475 Pfam PF00939 Sodium:sulfate symporter transmembrane region 3 473 1.0E-144 T 14-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 YP_2823 16966b4d84a88fc8a5bec36f5ba1eadb 424 TIGRFAM TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA 27 424 5.9E-237 T 14-10-2018 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA GO:0016226|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 YP_2823 16966b4d84a88fc8a5bec36f5ba1eadb 424 Pfam PF00266 Aminotransferase class-V 45 411 6.9E-137 T 14-10-2018 IPR000192 Aminotransferase class V domain YP_2823 16966b4d84a88fc8a5bec36f5ba1eadb 424 Gene3D G3DSA:3.90.1150.10 45 412 1.4E-144 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_2823 16966b4d84a88fc8a5bec36f5ba1eadb 424 SUPERFAMILY SSF53383 31 420 9.18E-108 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_2823 16966b4d84a88fc8a5bec36f5ba1eadb 424 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 236 255 - T 14-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YP_2823 16966b4d84a88fc8a5bec36f5ba1eadb 424 Gene3D G3DSA:3.40.640.10 57 315 1.4E-144 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_1137 e134e49ef98b5e60316f0703c5028526 508 Gene3D G3DSA:3.40.309.10 256 460 5.1E-150 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YP_1137 e134e49ef98b5e60316f0703c5028526 508 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 281 292 - T 14-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 YP_1137 e134e49ef98b5e60316f0703c5028526 508 Pfam PF00171 Aldehyde dehydrogenase family 27 487 7.5E-136 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YP_1137 e134e49ef98b5e60316f0703c5028526 508 SUPERFAMILY SSF53720 4 493 8.77E-144 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YP_1137 e134e49ef98b5e60316f0703c5028526 508 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 16 491 3.3E-201 T 14-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 YP_1137 e134e49ef98b5e60316f0703c5028526 508 Gene3D G3DSA:3.40.605.10 31 468 5.1E-150 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YP_3847 1295dcce90011b5ee984b435db56209a 483 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 42 123 8.2E-16 T 14-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 YP_3847 1295dcce90011b5ee984b435db56209a 483 Pfam PF02378 Phosphotransferase system, EIIC 124 416 3.1E-33 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 YP_3847 1295dcce90011b5ee984b435db56209a 483 Gene3D G3DSA:3.30.1360.60 15 90 5.4E-23 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 YP_3847 1295dcce90011b5ee984b435db56209a 483 Pfam PF00367 phosphotransferase system, EIIB 23 53 6.7E-13 T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 YP_3847 1295dcce90011b5ee984b435db56209a 483 SUPERFAMILY SSF55604 22 93 3.4E-20 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 YP_3847 1295dcce90011b5ee984b435db56209a 483 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 33 50 - T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 YP_3847 1295dcce90011b5ee984b435db56209a 483 TIGRFAM TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component 18 472 4.2E-211 T 14-10-2018 IPR011296 Phosphotransferase system, trehalose-specific IIBC component GO:0015574|GO:0015771|GO:0016021 KEGG: 00500+2.7.1.201 YP_3657 96623e3f85aba48302f1759a82861731 330 Gene3D G3DSA:3.40.190.10 126 325 8.2E-119 T 14-10-2018 YP_3657 96623e3f85aba48302f1759a82861731 330 SUPERFAMILY SSF53850 24 325 1.09E-64 T 14-10-2018 YP_3657 96623e3f85aba48302f1759a82861731 330 Pfam PF13343 Bacterial extracellular solute-binding protein 76 307 2.0E-17 T 14-10-2018 YP_3657 96623e3f85aba48302f1759a82861731 330 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 22 324 1.1E-144 T 14-10-2018 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter GO:0015888|GO:0030975 YP_3657 96623e3f85aba48302f1759a82861731 330 Gene3D G3DSA:3.40.190.10 26 300 8.2E-119 T 14-10-2018 YP_3657 96623e3f85aba48302f1759a82861731 330 TIGRFAM TIGR01276 thiB: thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein 11 330 1.5E-161 T 14-10-2018 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria GO:0015888|GO:0030288|GO:0030975 YP_0097 281eeb45ea6cb9f5ad9c36d112b83061 79 Hamap MF_01196 Cell division protein ZapB [zapB]. 1 79 18.09 T 14-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 YP_0097 281eeb45ea6cb9f5ad9c36d112b83061 79 Gene3D G3DSA:1.20.5.340 1 79 5.7E-33 T 14-10-2018 YP_0097 281eeb45ea6cb9f5ad9c36d112b83061 79 Pfam PF06005 Cell division protein ZapB 1 78 4.2E-28 T 14-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 YP_1179 8c7ab6ec3574604a67258887e4030860 871 Gene3D G3DSA:2.60.40.1840 444 545 8.1E-36 T 14-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily YP_1179 8c7ab6ec3574604a67258887e4030860 871 Pfam PF01433 Peptidase family M1 domain 208 439 8.4E-59 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 YP_1179 8c7ab6ec3574604a67258887e4030860 871 Gene3D G3DSA:1.25.50.10 546 870 9.7E-125 T 14-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily YP_1179 8c7ab6ec3574604a67258887e4030860 871 Gene3D G3DSA:2.60.40.1730 15 194 1.7E-71 T 14-10-2018 YP_1179 8c7ab6ec3574604a67258887e4030860 871 SUPERFAMILY SSF63737 1 193 2.88E-50 T 14-10-2018 YP_1179 8c7ab6ec3574604a67258887e4030860 871 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 548 870 6.4E-121 T 14-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal YP_1179 8c7ab6ec3574604a67258887e4030860 871 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 12 869 0.0 T 14-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 YP_1179 8c7ab6ec3574604a67258887e4030860 871 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 444 544 2.4E-33 T 14-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold YP_1179 8c7ab6ec3574604a67258887e4030860 871 Gene3D G3DSA:1.10.1740.60 195 279 5.7E-41 T 14-10-2018 YP_1179 8c7ab6ec3574604a67258887e4030860 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 126 141 2.4E-9 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 YP_1179 8c7ab6ec3574604a67258887e4030860 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 258 268 2.4E-9 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 YP_1179 8c7ab6ec3574604a67258887e4030860 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 313 325 2.4E-9 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 YP_1179 8c7ab6ec3574604a67258887e4030860 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 176 191 2.4E-9 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 YP_1179 8c7ab6ec3574604a67258887e4030860 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 294 309 2.4E-9 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 YP_1179 8c7ab6ec3574604a67258887e4030860 871 SUPERFAMILY SSF55486 204 450 2.2E-74 T 14-10-2018 YP_1179 8c7ab6ec3574604a67258887e4030860 871 Gene3D G3DSA:1.10.390.10 280 443 8.3E-65 T 14-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily YP_3799 1b5744deda53c14d411fdee26b8529cb 234 SUPERFAMILY SSF51182 1 232 1.07E-45 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily YP_3799 1b5744deda53c14d411fdee26b8529cb 234 Gene3D G3DSA:2.60.120.10 12 133 4.0E-36 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_3799 1b5744deda53c14d411fdee26b8529cb 234 Pfam PF02678 Pirin 5 119 1.1E-21 T 14-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 YP_3799 1b5744deda53c14d411fdee26b8529cb 234 Gene3D G3DSA:2.60.120.10 134 234 3.5E-33 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_3799 1b5744deda53c14d411fdee26b8529cb 234 PIRSF PIRSF006232 1 231 7.5E-32 T 14-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 YP_1533 64174b5fff37653a0e4f826733cddcf2 183 Gene3D G3DSA:2.40.160.20 23 183 5.0E-49 T 14-10-2018 YP_1533 64174b5fff37653a0e4f826733cddcf2 183 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 175 183 - T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_1533 64174b5fff37653a0e4f826733cddcf2 183 SUPERFAMILY SSF56925 29 183 1.62E-26 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_1533 64174b5fff37653a0e4f826733cddcf2 183 Pfam PF13505 Outer membrane protein beta-barrel domain 8 183 1.7E-21 T 14-10-2018 IPR027385 Outer membrane protein beta-barrel YP_1533 64174b5fff37653a0e4f826733cddcf2 183 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 144 165 1.0E-26 T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_1533 64174b5fff37653a0e4f826733cddcf2 183 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 55 67 1.0E-26 T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_1533 64174b5fff37653a0e4f826733cddcf2 183 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 98 121 1.0E-26 T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_1533 64174b5fff37653a0e4f826733cddcf2 183 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 171 182 1.0E-26 T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_3501 cc6620dcfec63b0199469eaf832c7e3a 242 PIRSF PIRSF004848 5 242 2.3E-74 T 14-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 YP_3501 cc6620dcfec63b0199469eaf832c7e3a 242 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 16 236 33.211 T 14-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 YP_3501 cc6620dcfec63b0199469eaf832c7e3a 242 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 87 101 - T 14-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 YP_3501 cc6620dcfec63b0199469eaf832c7e3a 242 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 11 237 2.6E-92 T 14-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 YP_3501 cc6620dcfec63b0199469eaf832c7e3a 242 Gene3D G3DSA:3.20.20.10 2 242 3.7E-82 T 14-10-2018 IPR029066 PLP-binding barrel YP_3501 cc6620dcfec63b0199469eaf832c7e3a 242 Pfam PF01168 Alanine racemase, N-terminal domain 17 237 1.9E-27 T 14-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YP_3501 cc6620dcfec63b0199469eaf832c7e3a 242 SUPERFAMILY SSF51419 7 235 3.14E-81 T 14-10-2018 IPR029066 PLP-binding barrel YP_0193 8a3fc129b7a4b7506ef3a982cb5c6baa 72 Hamap MF_00715 Protein SlyX [slyX]. 5 72 16.847 T 14-10-2018 IPR007236 SlyX YP_0193 8a3fc129b7a4b7506ef3a982cb5c6baa 72 Pfam PF04102 SlyX 6 72 5.6E-24 T 14-10-2018 IPR007236 SlyX YP_1530 0ae39385c74db5b68378838204f66c35 114 ProDom PD028709 MEMBRANE INNER YDGC GLPM ALGINATE BIOSYNTHESIS TRANSMEMBRANE REQUIRED FOR UNCHARACTERIZED 15 112 2.0E-49 T 14-10-2018 IPR009707 Membrane protein GlpM/YdgC YP_1530 0ae39385c74db5b68378838204f66c35 114 Pfam PF06942 GlpM protein 6 112 2.8E-50 T 14-10-2018 IPR009707 Membrane protein GlpM/YdgC YP_3912 b68deb1ef8825e3a9c1009350ede4707 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 312 1.0E-42 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_3282 d4c966b52c51418b7bf1c499cdac892b 729 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 205 2.9E-40 T 14-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 YP_3282 d4c966b52c51418b7bf1c499cdac892b 729 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 496 592 8.7E-26 T 14-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YP_3282 d4c966b52c51418b7bf1c499cdac892b 729 SUPERFAMILY SSF52096 2 303 3.7E-70 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YP_3282 d4c966b52c51418b7bf1c499cdac892b 729 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 317 494 1.4E-59 T 14-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YP_3282 d4c966b52c51418b7bf1c499cdac892b 729 Gene3D G3DSA:3.40.50.720 314 496 6.9E-65 T 14-10-2018 YP_3282 d4c966b52c51418b7bf1c499cdac892b 729 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 715 52.264 T 14-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YP_3282 d4c966b52c51418b7bf1c499cdac892b 729 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 493 517 - T 14-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YP_3282 d4c966b52c51418b7bf1c499cdac892b 729 Gene3D G3DSA:3.90.226.10 1 311 5.9E-95 T 14-10-2018 YP_3282 d4c966b52c51418b7bf1c499cdac892b 729 SUPERFAMILY SSF48179 495 611 7.82E-30 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_3282 d4c966b52c51418b7bf1c499cdac892b 729 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 14-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 YP_3282 d4c966b52c51418b7bf1c499cdac892b 729 Gene3D G3DSA:1.10.1040.50 497 709 9.1E-74 T 14-10-2018 YP_3282 d4c966b52c51418b7bf1c499cdac892b 729 SUPERFAMILY SSF51735 316 495 3.78E-56 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3282 d4c966b52c51418b7bf1c499cdac892b 729 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 714 0.0 T 14-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YP_3282 d4c966b52c51418b7bf1c499cdac892b 729 SUPERFAMILY SSF48179 622 714 1.62E-22 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YP_0802 7f9362bac98e68b25823b05db5b9faf9 1156 SUPERFAMILY SSF82861 871 954 1.7E-8 T 14-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 YP_0802 7f9362bac98e68b25823b05db5b9faf9 1156 SUPERFAMILY SSF50182 956 1021 1.14E-16 T 14-10-2018 IPR010920 LSM domain superfamily YP_0802 7f9362bac98e68b25823b05db5b9faf9 1156 Pfam PF00924 Mechanosensitive ion channel 913 1112 2.8E-58 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 YP_0802 7f9362bac98e68b25823b05db5b9faf9 1156 Gene3D G3DSA:3.30.70.100 1024 1117 3.3E-20 T 14-10-2018 YP_0802 7f9362bac98e68b25823b05db5b9faf9 1156 SUPERFAMILY SSF82689 1023 1123 4.05E-26 T 14-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 YP_0802 7f9362bac98e68b25823b05db5b9faf9 1156 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 534 852 5.8E-100 T 14-10-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YP_0802 7f9362bac98e68b25823b05db5b9faf9 1156 Gene3D G3DSA:2.30.30.60 971 1020 4.9E-13 T 14-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily YP_0802 7f9362bac98e68b25823b05db5b9faf9 1156 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 985 1019 - T 14-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 YP_0802 7f9362bac98e68b25823b05db5b9faf9 1156 Pfam PF12795 Mechanosensitive ion channel porin domain 76 314 8.6E-62 T 14-10-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain YP_4021 0d4dc1d8bfe23e10099d4adbcb7f70b2 259 Pfam PF00005 ABC transporter 28 183 2.0E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_4021 0d4dc1d8bfe23e10099d4adbcb7f70b2 259 SMART SM00382 37 239 5.7E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_4021 0d4dc1d8bfe23e10099d4adbcb7f70b2 259 SUPERFAMILY SSF52540 12 246 4.73E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_4021 0d4dc1d8bfe23e10099d4adbcb7f70b2 259 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_4021 0d4dc1d8bfe23e10099d4adbcb7f70b2 259 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 13 259 4.0E-121 T 14-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 YP_4021 0d4dc1d8bfe23e10099d4adbcb7f70b2 259 Gene3D G3DSA:3.40.50.300 11 257 1.2E-67 T 14-10-2018 YP_3658 c60ea73338bf23349b89b72b88926526 539 Gene3D G3DSA:1.10.3720.10 294 538 9.2E-26 T 14-10-2018 IPR035906 MetI-like superfamily YP_3658 c60ea73338bf23349b89b72b88926526 539 Gene3D G3DSA:1.10.3720.10 12 271 9.1E-44 T 14-10-2018 IPR035906 MetI-like superfamily YP_3658 c60ea73338bf23349b89b72b88926526 539 SUPERFAMILY SSF161098 14 268 4.32E-45 T 14-10-2018 IPR035906 MetI-like superfamily YP_3658 c60ea73338bf23349b89b72b88926526 539 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 265 7.2E-11 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_3658 c60ea73338bf23349b89b72b88926526 539 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 375 529 6.8E-9 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_3658 c60ea73338bf23349b89b72b88926526 539 TIGRFAM TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein 12 529 7.9E-240 T 14-10-2018 IPR005947 Thiamine ABC transporter, permease protein GO:0005215|GO:0015888|GO:0016021 YP_3658 c60ea73338bf23349b89b72b88926526 539 SUPERFAMILY SSF161098 290 532 1.96E-30 T 14-10-2018 IPR035906 MetI-like superfamily YP_3887 03fad9d4a9f59647963f9bfc7b01d010 169 Gene3D G3DSA:2.40.50.100 90 169 1.7E-31 T 14-10-2018 YP_3887 03fad9d4a9f59647963f9bfc7b01d010 169 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 16 169 6.3E-65 T 14-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 YP_3887 03fad9d4a9f59647963f9bfc7b01d010 169 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 130 143 1.7E-18 T 14-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 YP_3887 03fad9d4a9f59647963f9bfc7b01d010 169 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 115 129 1.7E-18 T 14-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 YP_3887 03fad9d4a9f59647963f9bfc7b01d010 169 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 98 111 1.7E-18 T 14-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 YP_3887 03fad9d4a9f59647963f9bfc7b01d010 169 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 125 142 - T 14-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 YP_3887 03fad9d4a9f59647963f9bfc7b01d010 169 SUPERFAMILY SSF51230 94 169 1.11E-26 T 14-10-2018 IPR011053 Single hybrid motif YP_3887 03fad9d4a9f59647963f9bfc7b01d010 169 Pfam PF00364 Biotin-requiring enzyme 97 168 8.6E-25 T 14-10-2018 IPR000089 Biotin/lipoyl attachment YP_3579 43f16cbea8e5ff74004368bbfb90d99f 132 Gene3D G3DSA:1.10.260.40 65 132 2.7E-23 T 14-10-2018 YP_3579 43f16cbea8e5ff74004368bbfb90d99f 132 SMART SM00530 74 128 1.3E-7 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_3579 43f16cbea8e5ff74004368bbfb90d99f 132 SUPERFAMILY SSF47413 64 127 3.07E-8 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_3579 43f16cbea8e5ff74004368bbfb90d99f 132 Pfam PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA 2 132 3.7E-61 T 14-10-2018 IPR032758 Antitoxin MqsA/HigA-2 YP_3579 43f16cbea8e5ff74004368bbfb90d99f 132 Gene3D G3DSA:1.20.58.720 1 64 2.8E-26 T 14-10-2018 YP_3579 43f16cbea8e5ff74004368bbfb90d99f 132 TIGRFAM TIGR03830 CxxCG_CxxCG_HTH: putative zinc finger/helix-turn-helix protein, YgiT family 4 132 2.0E-43 T 14-10-2018 IPR022452 Antitoxin MqsA YP_3579 43f16cbea8e5ff74004368bbfb90d99f 132 TIGRFAM TIGR03831 YgiT_finger: YgiT-type zinc finger domain 4 48 2.6E-15 T 14-10-2018 IPR022453 Zinc finger, MqsA-type YP_2406 afe3870023cf76dfd6059da1c64df290 399 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 239 3.2E-37 T 14-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal YP_2406 afe3870023cf76dfd6059da1c64df290 399 SUPERFAMILY SSF53901 208 397 3.54E-61 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_2406 afe3870023cf76dfd6059da1c64df290 399 Gene3D G3DSA:3.40.47.10 253 399 1.4E-52 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_2406 afe3870023cf76dfd6059da1c64df290 399 Gene3D G3DSA:3.40.47.10 1 252 1.7E-62 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_2406 afe3870023cf76dfd6059da1c64df290 399 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 147 163 - T 14-10-2018 IPR018201 Beta-ketoacyl synthase, active site YP_2406 afe3870023cf76dfd6059da1c64df290 399 SUPERFAMILY SSF53901 2 246 4.94E-58 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_2406 afe3870023cf76dfd6059da1c64df290 399 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 247 354 2.7E-30 T 14-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal YP_2406 afe3870023cf76dfd6059da1c64df290 399 SMART SM00825 Beta-ketoacyl synthase 3 399 4.4E-12 T 14-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YP_2243 c8be240148e8cce40a78344b74191386 117 Pfam PF01230 HIT domain 12 109 5.6E-30 T 14-10-2018 IPR001310 Histidine triad (HIT) protein YP_2243 c8be240148e8cce40a78344b74191386 117 Gene3D G3DSA:3.30.428.10 1 117 1.2E-36 T 14-10-2018 IPR036265 HIT-like superfamily YP_2243 c8be240148e8cce40a78344b74191386 117 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 14-10-2018 IPR019808 Histidine triad, conserved site YP_2243 c8be240148e8cce40a78344b74191386 117 SUPERFAMILY SSF54197 2 112 2.47E-36 T 14-10-2018 IPR036265 HIT-like superfamily YP_2243 c8be240148e8cce40a78344b74191386 117 PRINTS PR00332 Histidine triad family signature 95 105 3.9E-19 T 14-10-2018 IPR001310 Histidine triad (HIT) protein YP_2243 c8be240148e8cce40a78344b74191386 117 PRINTS PR00332 Histidine triad family signature 6 22 3.9E-19 T 14-10-2018 IPR001310 Histidine triad (HIT) protein YP_2243 c8be240148e8cce40a78344b74191386 117 PRINTS PR00332 Histidine triad family signature 27 45 3.9E-19 T 14-10-2018 IPR001310 Histidine triad (HIT) protein YP_3922 b4c19e8a1ec54064eb26c48c74b0121d 382 Pfam PF00296 Luciferase-like monooxygenase 4 325 1.4E-86 T 14-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 YP_3922 b4c19e8a1ec54064eb26c48c74b0121d 382 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 4 349 3.9E-189 T 14-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 YP_3922 b4c19e8a1ec54064eb26c48c74b0121d 382 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 3 379 78.681 T 14-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 YP_3922 b4c19e8a1ec54064eb26c48c74b0121d 382 SUPERFAMILY SSF51679 4 349 3.27E-98 T 14-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 YP_3922 b4c19e8a1ec54064eb26c48c74b0121d 382 Gene3D G3DSA:3.20.20.30 1 362 3.5E-153 T 14-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 YP_1729 66ceecd20b3b8c89f75e10c2f338b8d8 237 Hamap MF_00749 RNA chaperone ProQ [proQ]. 3 237 31.002 T 14-10-2018 IPR023529 RNA chaperone ProQ GO:0003723|GO:0010608|GO:0033592|GO:0034057 YP_1729 66ceecd20b3b8c89f75e10c2f338b8d8 237 SMART SM00945 5 119 5.0E-61 T 14-10-2018 IPR016103 ProQ/FinO domain YP_1729 66ceecd20b3b8c89f75e10c2f338b8d8 237 Gene3D G3DSA:1.10.1710.10 1 131 8.8E-25 T 14-10-2018 IPR036442 ProQ/FinO domain superfamily YP_1729 66ceecd20b3b8c89f75e10c2f338b8d8 237 SUPERFAMILY SSF48657 5 119 1.96E-39 T 14-10-2018 IPR036442 ProQ/FinO domain superfamily YP_1729 66ceecd20b3b8c89f75e10c2f338b8d8 237 Pfam PF04352 ProQ/FINO family 8 115 7.6E-43 T 14-10-2018 IPR016103 ProQ/FinO domain YP_1729 66ceecd20b3b8c89f75e10c2f338b8d8 237 Pfam PF17516 ProQ C-terminal domain 187 237 7.9E-25 T 14-10-2018 IPR035236 RNA chaperone ProQ, C-terminal YP_1510 634487a75fc9c0634348bac76aee8802 90 Gene3D G3DSA:3.10.450.530 1 83 4.8E-12 T 14-10-2018 IPR038573 Ribonuclease toxin BrnT superfamily YP_1510 634487a75fc9c0634348bac76aee8802 90 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 5 81 2.9E-20 T 14-10-2018 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system YP_2714 4d9138918912aaeda1be0628781cdd46 444 Gene3D G3DSA:2.40.50.100 88 232 3.1E-69 T 14-10-2018 YP_2714 4d9138918912aaeda1be0628781cdd46 444 Pfam PF13437 HlyD family secretion protein 200 305 1.2E-6 T 14-10-2018 YP_2714 4d9138918912aaeda1be0628781cdd46 444 Pfam PF13533 Biotin-lipoyl like 89 137 2.0E-16 T 14-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YP_2714 4d9138918912aaeda1be0628781cdd46 444 SUPERFAMILY SSF111369 81 320 1.12E-56 T 14-10-2018 YP_2714 4d9138918912aaeda1be0628781cdd46 444 Hamap MF_01422 Multidrug resistance protein MdtA [mdtA]. 4 415 55.141 T 14-10-2018 IPR022824 Multidrug resistance protein MdtA YP_2714 4d9138918912aaeda1be0628781cdd46 444 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 64 396 2.6E-77 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YP_2714 4d9138918912aaeda1be0628781cdd46 444 Gene3D G3DSA:2.40.30.170 82 304 3.1E-69 T 14-10-2018 YP_2714 4d9138918912aaeda1be0628781cdd46 444 Gene3D G3DSA:1.10.287.470 123 196 3.1E-69 T 14-10-2018 YP_2714 4d9138918912aaeda1be0628781cdd46 444 Gene3D G3DSA:2.40.420.20 305 398 7.1E-21 T 14-10-2018 YP_2707 b5728f9353d4275e574c8ca19069bbdc 451 Gene3D G3DSA:3.30.420.40 380 434 9.0E-13 T 14-10-2018 YP_2707 b5728f9353d4275e574c8ca19069bbdc 451 SUPERFAMILY SSF53067 209 448 2.07E-32 T 14-10-2018 YP_2707 b5728f9353d4275e574c8ca19069bbdc 451 Pfam PF00012 Hsp70 protein 131 229 5.3E-10 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_2707 b5728f9353d4275e574c8ca19069bbdc 451 Pfam PF00012 Hsp70 protein 332 423 9.2E-6 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YP_2707 b5728f9353d4275e574c8ca19069bbdc 451 Gene3D G3DSA:3.90.640.10 314 379 9.0E-13 T 14-10-2018 YP_2707 b5728f9353d4275e574c8ca19069bbdc 451 SUPERFAMILY SSF53067 2 205 3.24E-26 T 14-10-2018 YP_2707 b5728f9353d4275e574c8ca19069bbdc 451 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 214 227 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 YP_0354 ad3582e6c8cd701dd84ffdfbab45960d 293 TIGRFAM TIGR00542 hxl6Piso_put: putative hexulose-6-phosphate isomerase 4 283 1.3E-136 T 14-10-2018 IPR004560 L-ribulose-5-phosphate 3-epimerase GO:0005975|GO:0016861 KEGG: 00040+5.1.3.22|KEGG: 00053+5.1.3.22|MetaCyc: PWY-6961 YP_0354 ad3582e6c8cd701dd84ffdfbab45960d 293 Gene3D G3DSA:3.20.20.150 2 286 6.2E-74 T 14-10-2018 YP_0354 ad3582e6c8cd701dd84ffdfbab45960d 293 Pfam PF01261 Xylose isomerase-like TIM barrel 23 234 2.0E-35 T 14-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain YP_0354 ad3582e6c8cd701dd84ffdfbab45960d 293 SUPERFAMILY SSF51658 13 278 3.4E-56 T 14-10-2018 IPR036237 Xylose isomerase-like superfamily YP_0961 542038951e932867da91c35f4d8f8e3c 311 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 70 81 2.5E-14 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YP_0961 542038951e932867da91c35f4d8f8e3c 311 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 120 137 2.5E-14 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YP_0961 542038951e932867da91c35f4d8f8e3c 311 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 147 160 2.5E-14 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YP_0961 542038951e932867da91c35f4d8f8e3c 311 SUPERFAMILY SSF56601 3 281 1.84E-62 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YP_0961 542038951e932867da91c35f4d8f8e3c 311 Gene3D G3DSA:3.40.710.10 23 308 9.9E-66 T 14-10-2018 YP_0961 542038951e932867da91c35f4d8f8e3c 311 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 37 265 4.8E-82 T 14-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 YP_2588 03af6304a6ebefb3a11721ac4b270dc3 161 Gene3D G3DSA:2.30.110.20 4 160 3.4E-52 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_2588 03af6304a6ebefb3a11721ac4b270dc3 161 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 3 158 4.9E-60 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_2588 03af6304a6ebefb3a11721ac4b270dc3 161 SUPERFAMILY SSF141452 4 160 6.41E-36 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_2588 03af6304a6ebefb3a11721ac4b270dc3 161 Pfam PF05638 Type VI secretion system effector, Hcp 8 145 1.2E-23 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_0619 65bcd2d1704d03a933c6ddf8811b706a 193 SMART SM00072 1 181 1.7E-12 T 14-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YP_0619 65bcd2d1704d03a933c6ddf8811b706a 193 Hamap MF_00836 Ribose 1,5-bisphosphate phosphokinase PhnN [phnN]. 1 178 36.483 T 14-10-2018 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YP_0619 65bcd2d1704d03a933c6ddf8811b706a 193 TIGRFAM TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 3 178 9.2E-66 T 14-10-2018 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YP_0619 65bcd2d1704d03a933c6ddf8811b706a 193 Pfam PF13238 AAA domain 5 138 1.2E-8 T 14-10-2018 YP_0619 65bcd2d1704d03a933c6ddf8811b706a 193 SUPERFAMILY SSF52540 1 177 1.13E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0619 65bcd2d1704d03a933c6ddf8811b706a 193 Gene3D G3DSA:3.30.63.10 34 89 3.4E-19 T 14-10-2018 YP_0619 65bcd2d1704d03a933c6ddf8811b706a 193 Gene3D G3DSA:3.40.50.300 7 177 3.4E-19 T 14-10-2018 YP_2781 bf9471096bc1aa35d7c301b4e33354d2 572 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 459 6.4E-49 T 14-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_2781 bf9471096bc1aa35d7c301b4e33354d2 572 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 568 3.3E-271 T 14-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 YP_2781 bf9471096bc1aa35d7c301b4e33354d2 572 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 571 42.807 T 14-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 YP_2781 bf9471096bc1aa35d7c301b4e33354d2 572 SUPERFAMILY SSF55826 218 390 1.01E-30 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 YP_2781 bf9471096bc1aa35d7c301b4e33354d2 572 Pfam PF04073 Aminoacyl-tRNA editing domain 257 377 2.0E-25 T 14-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 YP_2781 bf9471096bc1aa35d7c301b4e33354d2 572 Pfam PF03129 Anticodon binding domain 475 568 8.6E-21 T 14-10-2018 IPR004154 Anticodon-binding YP_2781 bf9471096bc1aa35d7c301b4e33354d2 572 SUPERFAMILY SSF52954 462 571 5.74E-33 T 14-10-2018 YP_2781 bf9471096bc1aa35d7c301b4e33354d2 572 SUPERFAMILY SSF55681 10 478 6.64E-107 T 14-10-2018 YP_2781 bf9471096bc1aa35d7c301b4e33354d2 572 Gene3D G3DSA:3.30.930.10 11 465 7.2E-241 T 14-10-2018 YP_2781 bf9471096bc1aa35d7c301b4e33354d2 572 Gene3D G3DSA:3.90.960.10 240 389 7.2E-241 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 YP_2781 bf9471096bc1aa35d7c301b4e33354d2 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 2.9E-19 T 14-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 YP_2781 bf9471096bc1aa35d7c301b4e33354d2 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 2.9E-19 T 14-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 YP_2781 bf9471096bc1aa35d7c301b4e33354d2 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 2.9E-19 T 14-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 YP_2781 bf9471096bc1aa35d7c301b4e33354d2 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 2.9E-19 T 14-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 YP_2781 bf9471096bc1aa35d7c301b4e33354d2 572 Gene3D G3DSA:3.40.50.800 4 554 7.2E-241 T 14-10-2018 IPR036621 Anticodon-binding domain superfamily YP_2781 bf9471096bc1aa35d7c301b4e33354d2 572 PIRSF PIRSF001535 1 572 4.4E-275 T 14-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 YP_3077 327dac7537414b257547fa1fd6148739 530 Pfam PF14785 Maltose transport system permease protein MalF P2 domain 113 276 4.7E-62 T 14-10-2018 IPR029345 Maltose transport system permease protein MalF, P2 domain YP_3077 327dac7537414b257547fa1fd6148739 530 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 313 517 4.2E-20 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_3077 327dac7537414b257547fa1fd6148739 530 SUPERFAMILY SSF161098 277 519 7.33E-58 T 14-10-2018 IPR035906 MetI-like superfamily YP_3077 327dac7537414b257547fa1fd6148739 530 Gene3D G3DSA:3.10.650.10 111 284 1.1E-54 T 14-10-2018 YP_3077 327dac7537414b257547fa1fd6148739 530 SUPERFAMILY SSF160964 28 276 8.89E-83 T 14-10-2018 YP_3077 327dac7537414b257547fa1fd6148739 530 Gene3D G3DSA:1.20.58.370 14 108 2.7E-38 T 14-10-2018 IPR035277 MalF, N-terminal YP_3077 327dac7537414b257547fa1fd6148739 530 Gene3D G3DSA:2.40.430.10 131 220 1.1E-54 T 14-10-2018 YP_3077 327dac7537414b257547fa1fd6148739 530 Gene3D G3DSA:1.10.3720.10 286 530 1.8E-70 T 14-10-2018 IPR035906 MetI-like superfamily YP_3584 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 15 504 2.0E-228 T 14-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YP_3584 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 PIRSF PIRSF039101 1 505 1.1E-198 T 14-10-2018 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YP_3584 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 Gene3D G3DSA:2.40.50.140 15 154 5.6E-42 T 14-10-2018 YP_3584 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 21 505 45.105 T 14-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YP_3584 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 Pfam PF00152 tRNA synthetases class II (D, K and N) 162 501 6.8E-83 T 14-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 YP_3584 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 199 209 1.5E-39 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YP_3584 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 215 231 1.5E-39 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YP_3584 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 262 279 1.5E-39 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YP_3584 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 244 257 1.5E-39 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YP_3584 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 386 402 1.5E-39 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YP_3584 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 Pfam PF01336 OB-fold nucleic acid binding domain 68 146 2.5E-15 T 14-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 YP_3584 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 SUPERFAMILY SSF50249 13 155 1.52E-45 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_3584 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 Gene3D G3DSA:3.30.930.10 155 499 4.7E-135 T 14-10-2018 YP_3584 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 SUPERFAMILY SSF55681 162 502 3.06E-123 T 14-10-2018 YP_2276 b412f76fb45737753ea47e0cc45c66fb 245 SUPERFAMILY SSF75516 2 162 4.18E-36 T 14-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YP_2276 b412f76fb45737753ea47e0cc45c66fb 245 Pfam PF00196 Bacterial regulatory proteins, luxR family 181 234 1.3E-15 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2276 b412f76fb45737753ea47e0cc45c66fb 245 ProSitePatterns PS00622 LuxR-type HTH domain signature. 196 223 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2276 b412f76fb45737753ea47e0cc45c66fb 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 212 224 2.3E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2276 b412f76fb45737753ea47e0cc45c66fb 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 196 212 2.3E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2276 b412f76fb45737753ea47e0cc45c66fb 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 196 2.3E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2276 b412f76fb45737753ea47e0cc45c66fb 245 Gene3D G3DSA:3.30.450.80 1 177 7.7E-68 T 14-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YP_2276 b412f76fb45737753ea47e0cc45c66fb 245 SUPERFAMILY SSF46894 178 242 7.14E-16 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_2276 b412f76fb45737753ea47e0cc45c66fb 245 SMART SM00421 179 236 1.3E-15 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_2276 b412f76fb45737753ea47e0cc45c66fb 245 Gene3D G3DSA:1.10.10.10 178 243 4.0E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2276 b412f76fb45737753ea47e0cc45c66fb 245 Pfam PF03472 Autoinducer binding domain 13 157 1.0E-28 T 14-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YP_2974 bd87ce7bc8f06d5d914f528e3363c602 260 PIRSF PIRSF006157 1 260 3.8E-92 T 14-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 YP_2974 bd87ce7bc8f06d5d914f528e3363c602 260 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 9 257 6.1E-33 T 14-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 YP_2974 bd87ce7bc8f06d5d914f528e3363c602 260 Gene3D G3DSA:3.40.830.10 1 260 6.9E-94 T 14-10-2018 YP_2974 bd87ce7bc8f06d5d914f528e3363c602 260 SUPERFAMILY SSF53213 5 260 4.97E-92 T 14-10-2018 YP_1655 79913561607635faf2461c050697dc80 319 Pfam PF12833 Helix-turn-helix domain 239 317 1.5E-18 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_1655 79913561607635faf2461c050697dc80 319 SUPERFAMILY SSF46689 270 317 1.7E-12 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_1655 79913561607635faf2461c050697dc80 319 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 285 300 1.0E-6 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_1655 79913561607635faf2461c050697dc80 319 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 300 316 1.0E-6 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_1655 79913561607635faf2461c050697dc80 319 Gene3D G3DSA:1.10.10.60 212 319 6.8E-22 T 14-10-2018 YP_1655 79913561607635faf2461c050697dc80 319 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 270 312 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YP_1655 79913561607635faf2461c050697dc80 319 SMART SM00342 233 316 2.3E-24 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_1107 01aaf7c8f5defc60f8b0ebfdc7931188 105 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 7 104 1.1E-37 T 14-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS YP_1107 01aaf7c8f5defc60f8b0ebfdc7931188 105 SUPERFAMILY SSF81301 4 105 8.66E-37 T 14-10-2018 YP_1107 01aaf7c8f5defc60f8b0ebfdc7931188 105 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 6.1E-28 T 14-10-2018 YP_1107 01aaf7c8f5defc60f8b0ebfdc7931188 105 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 24.333 T 14-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS YP_1107 01aaf7c8f5defc60f8b0ebfdc7931188 105 Gene3D G3DSA:3.30.460.10 2 105 1.2E-35 T 14-10-2018 YP_2518 5c419e7d4e08e8222bd29d77452500e6 151 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 140 4.1E-35 T 14-10-2018 YP_2518 5c419e7d4e08e8222bd29d77452500e6 151 PIRSF PIRSF004923 1 150 8.6E-38 T 14-10-2018 IPR026268 Protein RseC YP_pMT009 f890867e23ec4a50e95dafdaf86c0346 265 SUPERFAMILY SSF102712 9 150 5.36E-16 T 14-10-2018 YP_pMT009 f890867e23ec4a50e95dafdaf86c0346 265 SUPERFAMILY SSF54001 131 255 9.51E-15 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily YP_pMT009 f890867e23ec4a50e95dafdaf86c0346 265 Gene3D G3DSA:3.40.140.10 8 125 1.4E-17 T 14-10-2018 YP_pMT009 f890867e23ec4a50e95dafdaf86c0346 265 Pfam PF00877 NlpC/P60 family 136 252 1.6E-23 T 14-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain YP_pMT009 f890867e23ec4a50e95dafdaf86c0346 265 SMART SM00232 10 135 1.0E-23 T 14-10-2018 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 YP_pMT009 f890867e23ec4a50e95dafdaf86c0346 265 Gene3D G3DSA:3.90.1720.10 131 258 6.2E-12 T 14-10-2018 YP_pMT009 f890867e23ec4a50e95dafdaf86c0346 265 Pfam PF14464 Prokaryotic homologs of the JAB domain 13 108 8.5E-12 T 14-10-2018 IPR028090 JAB domain, prokaryotic YP_3908 9867c20fd5abda541b9ed97ab64a9d8e 284 SUPERFAMILY SSF47616 118 260 9.75E-35 T 14-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YP_3908 9867c20fd5abda541b9ed97ab64a9d8e 284 Gene3D G3DSA:3.40.30.10 20 256 2.3E-111 T 14-10-2018 YP_3908 9867c20fd5abda541b9ed97ab64a9d8e 284 Pfam PF02798 Glutathione S-transferase, N-terminal domain 45 127 4.5E-9 T 14-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 YP_3908 9867c20fd5abda541b9ed97ab64a9d8e 284 Gene3D G3DSA:1.20.1050.10 134 250 2.3E-111 T 14-10-2018 YP_3908 9867c20fd5abda541b9ed97ab64a9d8e 284 SUPERFAMILY SSF52833 40 132 4.68E-18 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_3908 9867c20fd5abda541b9ed97ab64a9d8e 284 Pfam PF13410 Glutathione S-transferase, C-terminal domain 175 244 1.4E-10 T 14-10-2018 YP_0276 481250bdd6cc63ce7704ee3fc85d13d3 591 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 59 80 3.2E-6 T 14-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YP_0276 481250bdd6cc63ce7704ee3fc85d13d3 591 SUPERFAMILY SSF49503 472 589 9.78E-28 T 14-10-2018 IPR008972 Cupredoxin YP_0276 481250bdd6cc63ce7704ee3fc85d13d3 591 Gene3D G3DSA:2.60.40.420 88 233 3.7E-42 T 14-10-2018 IPR008972 Cupredoxin YP_0276 481250bdd6cc63ce7704ee3fc85d13d3 591 Gene3D G3DSA:2.60.40.420 404 590 3.9E-49 T 14-10-2018 IPR008972 Cupredoxin YP_0276 481250bdd6cc63ce7704ee3fc85d13d3 591 ProSitePatterns PS00080 Multicopper oxidases signature 2. 572 583 - T 14-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 YP_0276 481250bdd6cc63ce7704ee3fc85d13d3 591 SUPERFAMILY SSF49503 230 349 1.16E-32 T 14-10-2018 IPR008972 Cupredoxin YP_0276 481250bdd6cc63ce7704ee3fc85d13d3 591 Gene3D G3DSA:2.60.40.420 234 384 9.0E-44 T 14-10-2018 IPR008972 Cupredoxin YP_0276 481250bdd6cc63ce7704ee3fc85d13d3 591 SUPERFAMILY SSF49503 75 227 1.77E-28 T 14-10-2018 IPR008972 Cupredoxin YP_0276 481250bdd6cc63ce7704ee3fc85d13d3 591 Pfam PF07732 Multicopper oxidase 111 224 6.6E-32 T 14-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 YP_0276 481250bdd6cc63ce7704ee3fc85d13d3 591 Pfam PF07731 Multicopper oxidase 474 590 9.3E-25 T 14-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 YP_0276 481250bdd6cc63ce7704ee3fc85d13d3 591 Pfam PF00394 Multicopper oxidase 279 348 2.3E-6 T 14-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 YP_3550 10991cb2299d93454a516d4d71ccb570 400 Pfam PF07745 Glycosyl hydrolase family 53 40 399 9.3E-123 T 14-10-2018 IPR011683 Glycosyl hydrolase family 53 GO:0015926 YP_3550 10991cb2299d93454a516d4d71ccb570 400 Gene3D G3DSA:3.20.20.80 20 400 3.0E-146 T 14-10-2018 YP_3550 10991cb2299d93454a516d4d71ccb570 400 SUPERFAMILY SSF51445 14 399 4.15E-98 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily YP_1000 97b44c2f0eb1abc4162128b67ace5f53 341 Pfam PF04055 Radical SAM superfamily 33 193 1.2E-29 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YP_1000 97b44c2f0eb1abc4162128b67ace5f53 341 Pfam PF06463 Molybdenum Cofactor Synthesis C 198 324 1.8E-40 T 14-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YP_1000 97b44c2f0eb1abc4162128b67ace5f53 341 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 19 341 38.551 T 14-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YP_1000 97b44c2f0eb1abc4162128b67ace5f53 341 Pfam PF13353 4Fe-4S single cluster domain 37 137 1.9E-6 T 14-10-2018 YP_1000 97b44c2f0eb1abc4162128b67ace5f53 341 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 19 341 1.7E-104 T 14-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YP_1000 97b44c2f0eb1abc4162128b67ace5f53 341 SMART SM00729 28 232 9.7E-5 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 YP_1000 97b44c2f0eb1abc4162128b67ace5f53 341 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 34 45 - T 14-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YP_1000 97b44c2f0eb1abc4162128b67ace5f53 341 SUPERFAMILY SSF102114 19 294 9.55E-70 T 14-10-2018 YP_1000 97b44c2f0eb1abc4162128b67ace5f53 341 Gene3D G3DSA:3.20.20.70 15 341 1.4E-81 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_1975 a28376b238c84186360a863fc02a5b88 196 SUPERFAMILY SSF52540 1 141 5.03E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1975 a28376b238c84186360a863fc02a5b88 196 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 173 186 - T 14-10-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 YP_1975 a28376b238c84186360a863fc02a5b88 196 Gene3D G3DSA:3.40.50.300 1 141 1.2E-25 T 14-10-2018 YP_1975 a28376b238c84186360a863fc02a5b88 196 Gene3D G3DSA:3.30.60.20 144 190 2.8E-10 T 14-10-2018 YP_1975 a28376b238c84186360a863fc02a5b88 196 PIRSF PIRSF035805 1 194 2.2E-57 T 14-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 YP_1975 a28376b238c84186360a863fc02a5b88 196 Hamap MF_00124 Thymidine kinase [tdk]. 1 189 36.002 T 14-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 YP_1975 a28376b238c84186360a863fc02a5b88 196 SUPERFAMILY SSF57716 142 191 1.28E-17 T 14-10-2018 YP_1975 a28376b238c84186360a863fc02a5b88 196 Pfam PF00265 Thymidine kinase 2 186 6.5E-62 T 14-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 YP_0567 0bf707f17b3a3a3db68d6ed5f586e754 312 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 145 1.4E-45 T 14-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 YP_0567 0bf707f17b3a3a3db68d6ed5f586e754 312 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 310 2.3E-51 T 14-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 YP_0567 0bf707f17b3a3a3db68d6ed5f586e754 312 Hamap MF_01516 Malate dehydrogenase [mdh]. 1 311 59.859 T 14-10-2018 IPR023958 Malate dehydrogenase, type 1, bacterial GO:0006099|GO:0030060|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 YP_0567 0bf707f17b3a3a3db68d6ed5f586e754 312 ProSitePatterns PS00068 Malate dehydrogenase active site signature. 146 158 - T 14-10-2018 IPR001252 Malate dehydrogenase, active site GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263 YP_0567 0bf707f17b3a3a3db68d6ed5f586e754 312 PIRSF PIRSF000102 1 310 3.3E-60 T 14-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 YP_0567 0bf707f17b3a3a3db68d6ed5f586e754 312 SUPERFAMILY SSF56327 146 311 8.65E-43 T 14-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 YP_0567 0bf707f17b3a3a3db68d6ed5f586e754 312 SUPERFAMILY SSF51735 1 145 5.31E-39 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0567 0bf707f17b3a3a3db68d6ed5f586e754 312 Gene3D G3DSA:3.40.50.720 1 146 6.6E-64 T 14-10-2018 YP_0567 0bf707f17b3a3a3db68d6ed5f586e754 312 TIGRFAM TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 2 311 9.8E-137 T 14-10-2018 IPR010097 Malate dehydrogenase, type 1 GO:0006099|GO:0030060 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263|Reactome: R-HSA-71403 YP_0567 0bf707f17b3a3a3db68d6ed5f586e754 312 Gene3D G3DSA:3.90.110.10 147 312 1.2E-55 T 14-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 YP_pCD53 4cdf9b68bccde2523ba2532fb46e1668 168 SUPERFAMILY SSF48452 26 137 1.02E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_pCD53 4cdf9b68bccde2523ba2532fb46e1668 168 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 103 125 3.5E-50 T 14-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD YP_pCD53 4cdf9b68bccde2523ba2532fb46e1668 168 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 71 93 3.5E-50 T 14-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD YP_pCD53 4cdf9b68bccde2523ba2532fb46e1668 168 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 22 45 3.5E-50 T 14-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD YP_pCD53 4cdf9b68bccde2523ba2532fb46e1668 168 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 47 66 3.5E-50 T 14-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD YP_pCD53 4cdf9b68bccde2523ba2532fb46e1668 168 Pfam PF07720 Tetratricopeptide repeat 36 69 6.4E-8 T 14-10-2018 IPR011716 Tetratricopeptide TPR-3 YP_pCD53 4cdf9b68bccde2523ba2532fb46e1668 168 TIGRFAM TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD 19 154 9.5E-49 T 14-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD YP_pCD53 4cdf9b68bccde2523ba2532fb46e1668 168 Gene3D G3DSA:1.25.40.10 9 163 8.3E-63 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_pCD53 4cdf9b68bccde2523ba2532fb46e1668 168 PIRSF PIRSF003165 1 161 1.6E-55 T 14-10-2018 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup YP_pMT119 1db8068fbd936bcdfc42034319adbb92 587 Gene3D G3DSA:3.30.870.10 25 261 3.6E-36 T 14-10-2018 YP_pMT119 1db8068fbd936bcdfc42034319adbb92 587 SUPERFAMILY SSF56024 49 262 8.16E-14 T 14-10-2018 YP_pMT119 1db8068fbd936bcdfc42034319adbb92 587 SUPERFAMILY SSF56024 344 576 2.17E-15 T 14-10-2018 YP_pMT119 1db8068fbd936bcdfc42034319adbb92 587 SMART SM00155 520 547 4.3E-6 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 YP_pMT119 1db8068fbd936bcdfc42034319adbb92 587 SMART SM00155 183 210 1.3E-4 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 YP_1837 e493727d09d05328cf1b9b9736f9286d 703 SUPERFAMILY SSF81901 343 519 1.22E-9 T 14-10-2018 YP_1837 e493727d09d05328cf1b9b9736f9286d 703 Pfam PF13226 Domain of unknown function (DUF4034) 31 309 6.8E-113 T 14-10-2018 IPR025115 Domain of unknown function DUF4034 YP_1837 e493727d09d05328cf1b9b9736f9286d 703 SMART SM00671 484 519 20.0 T 14-10-2018 IPR006597 Sel1-like repeat YP_1837 e493727d09d05328cf1b9b9736f9286d 703 SMART SM00671 346 377 140.0 T 14-10-2018 IPR006597 Sel1-like repeat YP_1837 e493727d09d05328cf1b9b9736f9286d 703 SMART SM00671 624 660 320.0 T 14-10-2018 IPR006597 Sel1-like repeat YP_1837 e493727d09d05328cf1b9b9736f9286d 703 SMART SM00671 415 451 8.5 T 14-10-2018 IPR006597 Sel1-like repeat YP_1580 9bbc8b7648f5032f70d159d498b438b2 331 Pfam PF13407 Periplasmic binding protein domain 29 284 4.3E-45 T 14-10-2018 IPR025997 Periplasmic binding protein YP_1580 9bbc8b7648f5032f70d159d498b438b2 331 Gene3D G3DSA:3.40.50.2300 131 265 8.6E-95 T 14-10-2018 YP_1580 9bbc8b7648f5032f70d159d498b438b2 331 SUPERFAMILY SSF53822 26 331 3.3E-60 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_1580 9bbc8b7648f5032f70d159d498b438b2 331 Gene3D G3DSA:3.40.50.2300 28 304 8.6E-95 T 14-10-2018 YP_0047 a474a8c6dc171e169fb3a3c4dfd50011 198 SUPERFAMILY SSF48498 86 176 2.36E-5 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YP_0047 a474a8c6dc171e169fb3a3c4dfd50011 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 14-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YP_0047 a474a8c6dc171e169fb3a3c4dfd50011 198 SUPERFAMILY SSF46689 10 73 9.48E-12 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0047 a474a8c6dc171e169fb3a3c4dfd50011 198 Hamap MF_01839 Nucleoid occlusion factor SlmA [slmA]. 1 198 40.71 T 14-10-2018 IPR023769 Nucleoid occlusion factor SlmA GO:0010974 YP_0047 a474a8c6dc171e169fb3a3c4dfd50011 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 61 2.1E-8 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YP_0047 a474a8c6dc171e169fb3a3c4dfd50011 198 Gene3D G3DSA:1.10.357.10 9 198 6.7E-73 T 14-10-2018 YP_1565 9ca4eca909b31b24054cbc7dbd5c5f16 492 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 49 487 1.3E-196 T 14-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_1565 9ca4eca909b31b24054cbc7dbd5c5f16 492 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 199 410 5.9E-71 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_1565 9ca4eca909b31b24054cbc7dbd5c5f16 492 SUPERFAMILY SSF52540 146 416 4.61E-91 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1565 9ca4eca909b31b24054cbc7dbd5c5f16 492 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 401 410 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_1565 9ca4eca909b31b24054cbc7dbd5c5f16 492 Gene3D G3DSA:3.40.50.12240 39 492 2.4E-166 T 14-10-2018 YP_1565 9ca4eca909b31b24054cbc7dbd5c5f16 492 SMART SM00382 211 394 5.8E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1565 9ca4eca909b31b24054cbc7dbd5c5f16 492 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 26 490 3.9E-187 T 14-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_2810 d9314a0b448293f48273e8eadb1824d7 289 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 190 224 8.0E-12 T 14-10-2018 IPR001451 Hexapeptide repeat YP_2810 d9314a0b448293f48273e8eadb1824d7 289 SUPERFAMILY SSF51161 16 271 9.98E-80 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily YP_2810 d9314a0b448293f48273e8eadb1824d7 289 Gene3D G3DSA:1.10.166.10 14 85 1.1E-34 T 14-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 YP_2810 d9314a0b448293f48273e8eadb1824d7 289 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 147 181 6.0E-4 T 14-10-2018 IPR001451 Hexapeptide repeat YP_2810 d9314a0b448293f48273e8eadb1824d7 289 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 18 288 2.2E-159 T 14-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 YP_2810 d9314a0b448293f48273e8eadb1824d7 289 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 18 84 6.5E-25 T 14-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 YP_2810 d9314a0b448293f48273e8eadb1824d7 289 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 149 177 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YP_2810 d9314a0b448293f48273e8eadb1824d7 289 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 16 287 58.625 T 14-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 YP_2810 d9314a0b448293f48273e8eadb1824d7 289 Gene3D G3DSA:2.160.10.10 102 272 1.5E-57 T 14-10-2018 YP_3454 c31f12a54fe06305d8e3bacb05cd3a75 247 Pfam PF00196 Bacterial regulatory proteins, luxR family 181 233 2.5E-15 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_3454 c31f12a54fe06305d8e3bacb05cd3a75 247 ProSitePatterns PS00622 LuxR-type HTH domain signature. 196 223 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_3454 c31f12a54fe06305d8e3bacb05cd3a75 247 SUPERFAMILY SSF75516 13 162 1.16E-35 T 14-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YP_3454 c31f12a54fe06305d8e3bacb05cd3a75 247 SUPERFAMILY SSF46894 174 242 2.41E-16 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_3454 c31f12a54fe06305d8e3bacb05cd3a75 247 Pfam PF03472 Autoinducer binding domain 13 157 2.2E-31 T 14-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YP_3454 c31f12a54fe06305d8e3bacb05cd3a75 247 SMART SM00421 179 236 7.1E-17 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_3454 c31f12a54fe06305d8e3bacb05cd3a75 247 Gene3D G3DSA:1.10.10.10 177 242 1.9E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3454 c31f12a54fe06305d8e3bacb05cd3a75 247 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 196 212 1.1E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_3454 c31f12a54fe06305d8e3bacb05cd3a75 247 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 212 224 1.1E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_3454 c31f12a54fe06305d8e3bacb05cd3a75 247 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 196 1.1E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_3454 c31f12a54fe06305d8e3bacb05cd3a75 247 Gene3D G3DSA:3.30.450.80 3 176 2.6E-49 T 14-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YP_1768 d3af22d892a2b4495d4cd9367376a029 371 Gene3D G3DSA:2.30.30.280 214 282 1.4E-27 T 14-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 YP_1768 d3af22d892a2b4495d4cd9367376a029 371 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 7 361 6.1E-156 T 14-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 YP_1768 d3af22d892a2b4495d4cd9367376a029 371 Gene3D G3DSA:2.40.30.10 283 369 5.2E-34 T 14-10-2018 YP_1768 d3af22d892a2b4495d4cd9367376a029 371 Pfam PF03054 tRNA methyl transferase 7 361 1.5E-142 T 14-10-2018 YP_1768 d3af22d892a2b4495d4cd9367376a029 371 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 7 362 40.894 T 14-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 YP_1768 d3af22d892a2b4495d4cd9367376a029 371 SUPERFAMILY SSF52402 5 245 2.43E-56 T 14-10-2018 YP_1768 d3af22d892a2b4495d4cd9367376a029 371 Gene3D G3DSA:3.40.50.620 1 212 2.0E-96 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0934 7ede0889e31d12ba90784981f9259439 296 Pfam PF00892 EamA-like transporter family 16 144 2.9E-21 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_0934 7ede0889e31d12ba90784981f9259439 296 Pfam PF00892 EamA-like transporter family 154 287 1.0E-16 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_0934 7ede0889e31d12ba90784981f9259439 296 SUPERFAMILY SSF103481 45 146 6.02E-12 T 14-10-2018 YP_0934 7ede0889e31d12ba90784981f9259439 296 SUPERFAMILY SSF103481 187 290 9.68E-13 T 14-10-2018 YP_0580 280e8f0e834df5a944a41d856d3233c6 213 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 19 212 27.559 T 14-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 YP_0580 280e8f0e834df5a944a41d856d3233c6 213 Pfam PF01728 FtsJ-like methyltransferase 35 210 2.0E-58 T 14-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 YP_0580 280e8f0e834df5a944a41d856d3233c6 213 Gene3D G3DSA:3.40.50.150 34 212 3.1E-61 T 14-10-2018 YP_0580 280e8f0e834df5a944a41d856d3233c6 213 SUPERFAMILY SSF53335 35 211 1.1E-42 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0580 280e8f0e834df5a944a41d856d3233c6 213 TIGRFAM TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J 24 210 2.0E-94 T 14-10-2018 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria GO:0006364|GO:0016436 YP_0580 280e8f0e834df5a944a41d856d3233c6 213 PIRSF PIRSF005461 3 213 1.0E-81 T 14-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 YP_1385 84140f88603c16dd124ced7bf7d14382 424 Pfam PF03454 MoeA C-terminal region (domain IV) 334 406 4.9E-19 T 14-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YP_1385 84140f88603c16dd124ced7bf7d14382 424 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 256 289 - T 14-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 YP_1385 84140f88603c16dd124ced7bf7d14382 424 Gene3D G3DSA:3.40.980.10 28 330 1.5E-144 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily YP_1385 84140f88603c16dd124ced7bf7d14382 424 Gene3D G3DSA:3.90.105.10 29 177 1.5E-144 T 14-10-2018 YP_1385 84140f88603c16dd124ced7bf7d14382 424 Pfam PF03453 MoeA N-terminal region (domain I and II) 11 170 1.1E-44 T 14-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YP_1385 84140f88603c16dd124ced7bf7d14382 424 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 180 316 1.8E-32 T 14-10-2018 IPR001453 MoaB/Mog domain YP_1385 84140f88603c16dd124ced7bf7d14382 424 Gene3D G3DSA:2.40.340.10 331 401 1.5E-144 T 14-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YP_1385 84140f88603c16dd124ced7bf7d14382 424 Pfam PF00994 Probable molybdopterin binding domain 183 319 4.5E-26 T 14-10-2018 IPR001453 MoaB/Mog domain YP_1385 84140f88603c16dd124ced7bf7d14382 424 SUPERFAMILY SSF63882 9 178 1.44E-54 T 14-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YP_1385 84140f88603c16dd124ced7bf7d14382 424 SUPERFAMILY SSF53218 180 327 8.38E-43 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily YP_1385 84140f88603c16dd124ced7bf7d14382 424 SUPERFAMILY SSF63867 330 410 2.22E-24 T 14-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YP_1385 84140f88603c16dd124ced7bf7d14382 424 SMART SM00852 183 320 1.4E-42 T 14-10-2018 IPR001453 MoaB/Mog domain YP_1385 84140f88603c16dd124ced7bf7d14382 424 Gene3D G3DSA:2.170.190.11 53 144 1.5E-144 T 14-10-2018 YP_1980 61c44d81695c7b98986ff20cb1ed079a 306 SUPERFAMILY SSF161098 91 291 2.94E-20 T 14-10-2018 IPR035906 MetI-like superfamily YP_1980 61c44d81695c7b98986ff20cb1ed079a 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 306 1.8E-38 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1980 61c44d81695c7b98986ff20cb1ed079a 306 Gene3D G3DSA:1.10.3720.10 85 301 5.1E-20 T 14-10-2018 IPR035906 MetI-like superfamily YP_0334 f8679aaa2f186bc66bff1f913ef3e3ba 151 Gene3D G3DSA:3.40.1400.10 1 149 3.8E-52 T 14-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 YP_0334 f8679aaa2f186bc66bff1f913ef3e3ba 151 Pfam PF02502 Ribose/Galactose Isomerase 4 142 5.7E-51 T 14-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 YP_0334 f8679aaa2f186bc66bff1f913ef3e3ba 151 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 4 147 2.0E-47 T 14-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 YP_0334 f8679aaa2f186bc66bff1f913ef3e3ba 151 SUPERFAMILY SSF89623 2 146 3.01E-52 T 14-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 YP_0334 f8679aaa2f186bc66bff1f913ef3e3ba 151 TIGRFAM TIGR01120 rpiB: ribose 5-phosphate isomerase B 4 143 4.9E-45 T 14-10-2018 IPR004785 Ribose 5-phosphate isomerase B GO:0004751|GO:0006098 YP_0334 f8679aaa2f186bc66bff1f913ef3e3ba 151 PIRSF PIRSF005384 2 148 2.5E-53 T 14-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 YP_3991 2d594bf7d7493b5d7970bb5e9085cfbf 456 SUPERFAMILY SSF53383 97 445 5.36E-60 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_3991 2d594bf7d7493b5d7970bb5e9085cfbf 456 Gene3D G3DSA:3.40.640.10 35 450 1.1E-145 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_3991 2d594bf7d7493b5d7970bb5e9085cfbf 456 Pfam PF00155 Aminotransferase class I and II 103 426 5.6E-22 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YP_3361 daf578d4274282727ce85049de606691 358 Gene3D G3DSA:3.40.50.300 32 357 7.8E-95 T 14-10-2018 YP_3361 daf578d4274282727ce85049de606691 358 SUPERFAMILY SSF52540 44 282 6.44E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3361 daf578d4274282727ce85049de606691 358 ProSitePatterns PS00211 ABC transporters family signature. 183 197 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3361 daf578d4274282727ce85049de606691 358 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 262 327 2.3E-18 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YP_3361 daf578d4274282727ce85049de606691 358 Pfam PF00005 ABC transporter 59 210 2.4E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3361 daf578d4274282727ce85049de606691 358 SMART SM00382 68 260 2.8E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3361 daf578d4274282727ce85049de606691 358 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 261 345 4.1E-26 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YP_0924 9321e74019d3e5cde62500696239f500 391 Gene3D G3DSA:1.10.620.20 17 355 7.9E-147 T 14-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 YP_0924 9321e74019d3e5cde62500696239f500 391 SUPERFAMILY SSF47240 18 355 2.08E-111 T 14-10-2018 IPR009078 Ferritin-like superfamily YP_0924 9321e74019d3e5cde62500696239f500 391 Pfam PF00268 Ribonucleotide reductase, small chain 48 347 1.3E-45 T 14-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_0924 9321e74019d3e5cde62500696239f500 391 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 130 146 - T 14-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_3021 cc6fbcee784704959b8cb520bcb84c80 256 Pfam PF00813 FliP family 59 249 2.3E-74 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_3021 cc6fbcee784704959b8cb520bcb84c80 256 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 182 197 - T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_3021 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 76 96 4.5E-66 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_3021 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 227 252 4.5E-66 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_3021 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 57 76 4.5E-66 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_3021 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 182 202 4.5E-66 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_3021 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 96 115 4.5E-66 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_3021 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 203 224 4.5E-66 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YP_3021 cc6fbcee784704959b8cb520bcb84c80 256 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 59 252 7.4E-73 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YP_3021 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 115 127 1.5E-11 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YP_3021 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 243 253 1.5E-11 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YP_3021 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 55 64 1.5E-11 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YP_3021 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 175 187 1.5E-11 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YP_3021 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 127 141 1.5E-11 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YP_0017 763ac468b98a4d2f5c9db4f860b44e84 207 PIRSF PIRSF001488 1 207 1.5E-91 T 14-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL YP_0017 763ac468b98a4d2f5c9db4f860b44e84 207 Pfam PF01323 DSBA-like thioredoxin domain 40 194 1.9E-28 T 14-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 YP_0017 763ac468b98a4d2f5c9db4f860b44e84 207 Gene3D G3DSA:3.40.30.10 18 207 8.0E-53 T 14-10-2018 YP_0017 763ac468b98a4d2f5c9db4f860b44e84 207 SUPERFAMILY SSF52833 20 203 3.18E-46 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_0017 763ac468b98a4d2f5c9db4f860b44e84 207 ProSitePatterns PS00194 Thioredoxin family active site. 41 59 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 YP_pMT021 1a126cdd4321741373f5df313a75a554 220 SUPERFAMILY SSF49373 133 214 1.41E-16 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_pMT021 1a126cdd4321741373f5df313a75a554 220 SUPERFAMILY SSF49373 51 130 1.1E-12 T 14-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YP_pMT021 1a126cdd4321741373f5df313a75a554 220 Gene3D G3DSA:2.60.40.1080 132 217 7.2E-24 T 14-10-2018 YP_pMT021 1a126cdd4321741373f5df313a75a554 220 Gene3D G3DSA:2.60.40.1080 51 131 3.9E-17 T 14-10-2018 YP_pMT021 1a126cdd4321741373f5df313a75a554 220 Pfam PF02368 Bacterial Ig-like domain (group 2) 52 128 2.7E-23 T 14-10-2018 IPR003343 Bacterial Ig-like, group 2 YP_pMT021 1a126cdd4321741373f5df313a75a554 220 Pfam PF02368 Bacterial Ig-like domain (group 2) 135 212 3.4E-26 T 14-10-2018 IPR003343 Bacterial Ig-like, group 2 YP_pMT021 1a126cdd4321741373f5df313a75a554 220 SMART SM00635 51 127 9.4E-18 T 14-10-2018 IPR003343 Bacterial Ig-like, group 2 YP_pMT021 1a126cdd4321741373f5df313a75a554 220 SMART SM00635 134 211 6.4E-23 T 14-10-2018 IPR003343 Bacterial Ig-like, group 2 YP_2761 d403c294ac943a8c9af4f669877573e1 449 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 4 447 3.3E-138 T 14-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YP_2761 d403c294ac943a8c9af4f669877573e1 449 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 446 2.6E-140 T 14-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YP_1459 37a2528ccb1eefb1cb0910c55fa859db 476 TIGRFAM TIGR00797 matE: MATE efflux family protein 41 445 3.6E-63 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 YP_1459 37a2528ccb1eefb1cb0910c55fa859db 476 PIRSF PIRSF006603 21 472 1.3E-66 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 YP_1459 37a2528ccb1eefb1cb0910c55fa859db 476 Pfam PF01554 MatE 271 432 3.4E-19 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 YP_1459 37a2528ccb1eefb1cb0910c55fa859db 476 Pfam PF01554 MatE 41 201 1.0E-35 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 YP_2551 8f0a154b9f79ed4953d79bfe820b140c 385 SUPERFAMILY SSF103473 7 372 1.96E-38 T 14-10-2018 IPR036259 MFS transporter superfamily YP_2551 8f0a154b9f79ed4953d79bfe820b140c 385 PIRSF PIRSF004925 1 385 1.1E-111 T 14-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter YP_2551 8f0a154b9f79ed4953d79bfe820b140c 385 Gene3D G3DSA:1.20.1250.20 4 180 8.9E-18 T 14-10-2018 YP_2551 8f0a154b9f79ed4953d79bfe820b140c 385 Gene3D G3DSA:1.20.1250.20 186 374 4.6E-36 T 14-10-2018 YP_2551 8f0a154b9f79ed4953d79bfe820b140c 385 Pfam PF12832 MFS_1 like family 8 360 3.9E-50 T 14-10-2018 IPR024989 Major facilitator superfamily associated domain YP_0963 3d3b0db781b05645965d2e3d65614e73 314 Gene3D G3DSA:3.20.20.70 1 244 3.7E-86 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_0963 3d3b0db781b05645965d2e3d65614e73 314 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 14-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 YP_0963 3d3b0db781b05645965d2e3d65614e73 314 Pfam PF01207 Dihydrouridine synthase (Dus) 6 292 1.6E-88 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 YP_0963 3d3b0db781b05645965d2e3d65614e73 314 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 10 312 51.76 T 14-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 YP_0963 3d3b0db781b05645965d2e3d65614e73 314 Gene3D G3DSA:1.20.225.30 245 314 2.0E-33 T 14-10-2018 YP_0963 3d3b0db781b05645965d2e3d65614e73 314 PIRSF PIRSF006621 1 314 2.1E-82 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 YP_0963 3d3b0db781b05645965d2e3d65614e73 314 SUPERFAMILY SSF51395 3 304 8.97E-71 T 14-10-2018 YP_1415 1cc67ca00e44b5ad7be4c7bd1edc1058 584 Pfam PF05170 AsmA family 3 221 2.5E-14 T 14-10-2018 IPR007844 AsmA YP_1415 1cc67ca00e44b5ad7be4c7bd1edc1058 584 Pfam PF13502 AsmA-like C-terminal region 325 515 6.5E-21 T 14-10-2018 IPR032712 AsmA-like, C-terminal YP_0794 5b8872371b181aea2a9a0dd8083c0c1b 122 Pfam PF10757 Biofilm formation regulator YbaJ 1 118 2.5E-64 T 14-10-2018 IPR019693 Biofilm formation regulator YbaJ YP_2675 f766d7fe3fb9ab487da6cbea82d3a892 375 Pfam PF07687 Peptidase dimerisation domain 175 282 2.0E-23 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain YP_2675 f766d7fe3fb9ab487da6cbea82d3a892 375 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 61 70 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 YP_2675 f766d7fe3fb9ab487da6cbea82d3a892 375 Gene3D G3DSA:3.30.70.360 179 292 7.5E-125 T 14-10-2018 YP_2675 f766d7fe3fb9ab487da6cbea82d3a892 375 Gene3D G3DSA:3.40.630.10 8 360 7.5E-125 T 14-10-2018 YP_2675 f766d7fe3fb9ab487da6cbea82d3a892 375 SUPERFAMILY SSF55031 179 286 3.44E-27 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain YP_2675 f766d7fe3fb9ab487da6cbea82d3a892 375 SUPERFAMILY SSF53187 5 373 2.16E-64 T 14-10-2018 YP_2675 f766d7fe3fb9ab487da6cbea82d3a892 375 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 6 373 1.3E-176 T 14-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 YP_2675 f766d7fe3fb9ab487da6cbea82d3a892 375 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 3 375 52.284 T 14-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 YP_2675 f766d7fe3fb9ab487da6cbea82d3a892 375 Pfam PF01546 Peptidase family M20/M25/M40 62 371 7.3E-44 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 YP_0679 41d8782fb50ec969473b798e995aa09c 248 SMART SM00382 28 215 4.1E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0679 41d8782fb50ec969473b798e995aa09c 248 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0679 41d8782fb50ec969473b798e995aa09c 248 SUPERFAMILY SSF52540 3 236 1.03E-77 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0679 41d8782fb50ec969473b798e995aa09c 248 Pfam PF00005 ABC transporter 19 167 3.3E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0679 41d8782fb50ec969473b798e995aa09c 248 Gene3D G3DSA:3.40.50.300 2 247 1.1E-76 T 14-10-2018 YP_0679 41d8782fb50ec969473b798e995aa09c 248 PIRSF PIRSF039085 1 243 6.9E-111 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 YP_1250 3914a4363d77e48cc9a1fd9e2f040a7c 265 Gene3D G3DSA:3.40.50.150 11 249 6.2E-33 T 14-10-2018 YP_1250 3914a4363d77e48cc9a1fd9e2f040a7c 265 SUPERFAMILY SSF51735 113 219 6.82E-13 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1250 3914a4363d77e48cc9a1fd9e2f040a7c 265 Pfam PF03059 Nicotianamine synthase protein 8 229 4.3E-13 T 14-10-2018 IPR004298 Nicotianamine synthase GO:0030410|GO:0030418 MetaCyc: PWY-5912|MetaCyc: PWY-5957 YP_3453 33a2b6572008272a44048a0977fc8206 458 Gene3D G3DSA:2.60.40.2180 28 127 1.2E-17 T 14-10-2018 YP_3453 33a2b6572008272a44048a0977fc8206 458 SUPERFAMILY SSF53474 187 392 1.2E-17 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_3453 33a2b6572008272a44048a0977fc8206 458 Pfam PF10503 Esterase PHB depolymerase 290 341 6.1E-5 T 14-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 YP_3453 33a2b6572008272a44048a0977fc8206 458 Gene3D G3DSA:3.40.50.1820 182 458 2.0E-50 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_2318 710e5692e794bb2ff559a7022e6fd069 222 Gene3D G3DSA:1.20.1260.90 37 200 1.0E-5 T 14-10-2018 IPR038334 NleF superfamily YP_2318 710e5692e794bb2ff559a7022e6fd069 222 Pfam PF16809 NleF caspase inhibitor 35 178 1.3E-55 T 14-10-2018 IPR031829 Effector protein NleF YP_3623 2a89f936a2b746762bd70d785e79989a 311 Gene3D G3DSA:3.30.230.20 6 133 5.5E-52 T 14-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 YP_3623 2a89f936a2b746762bd70d785e79989a 311 SUPERFAMILY SSF54211 8 129 1.06E-41 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_3623 2a89f936a2b746762bd70d785e79989a 311 SUPERFAMILY SSF54211 139 283 1.44E-54 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_3623 2a89f936a2b746762bd70d785e79989a 311 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 7 306 5.6E-159 T 14-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 YP_3623 2a89f936a2b746762bd70d785e79989a 311 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 9 281 2.0E-108 T 14-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 YP_3623 2a89f936a2b746762bd70d785e79989a 311 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 7 285 46.027 T 14-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 YP_3623 2a89f936a2b746762bd70d785e79989a 311 Gene3D G3DSA:3.30.1700.10 134 311 1.3E-75 T 14-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 YP_0539 09a60e50cbcc64ff7517683a17a84ee0 53 Gene3D G3DSA:3.30.1660.10 1 53 2.3E-11 T 14-10-2018 IPR025543 Dodecin-like YP_0539 09a60e50cbcc64ff7517683a17a84ee0 53 Pfam PF07338 Protein of unknown function (DUF1471) 1 53 1.4E-15 T 14-10-2018 IPR010854 Domain of unknown function DUF1471 YP_0539 09a60e50cbcc64ff7517683a17a84ee0 53 SUPERFAMILY SSF159871 1 53 4.84E-15 T 14-10-2018 IPR036275 YdgH-like superfamily YP_3204 e9ab5dd7bce88b7a0ddf37f453dcdbba 303 Gene3D G3DSA:1.10.150.130 9 103 1.9E-19 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal YP_3204 e9ab5dd7bce88b7a0ddf37f453dcdbba 303 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 13 300 1.2E-107 T 14-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 YP_3204 e9ab5dd7bce88b7a0ddf37f453dcdbba 303 Gene3D G3DSA:1.10.443.10 116 292 7.6E-58 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YP_3204 e9ab5dd7bce88b7a0ddf37f453dcdbba 303 Pfam PF00589 Phage integrase family 117 284 6.8E-52 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YP_3204 e9ab5dd7bce88b7a0ddf37f453dcdbba 303 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 12 95 4.3E-22 T 14-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 YP_3204 e9ab5dd7bce88b7a0ddf37f453dcdbba 303 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 10 298 56.232 T 14-10-2018 IPR023009 Tyrosine recombinase XerC/XerD YP_3204 e9ab5dd7bce88b7a0ddf37f453dcdbba 303 SUPERFAMILY SSF56349 113 296 8.24E-53 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YP_3204 e9ab5dd7bce88b7a0ddf37f453dcdbba 303 SUPERFAMILY SSF47823 10 102 5.1E-11 T 14-10-2018 YP_3535 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 4.1E-15 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_3535 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 4.1E-15 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_3535 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 4.1E-15 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_3535 cfebeaa8852f0de1b16a578e7ad63aaa 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 248 2.3E-56 T 14-10-2018 YP_3535 cfebeaa8852f0de1b16a578e7ad63aaa 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YP_3535 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 2.3E-41 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_3535 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.3E-41 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_3535 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.3E-41 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_3535 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.3E-41 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_3535 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 2.3E-41 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_3535 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.3E-41 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_3535 cfebeaa8852f0de1b16a578e7ad63aaa 251 Gene3D G3DSA:3.40.50.720 1 251 1.5E-79 T 14-10-2018 YP_3535 cfebeaa8852f0de1b16a578e7ad63aaa 251 SUPERFAMILY SSF51735 3 250 4.74E-76 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3535 cfebeaa8852f0de1b16a578e7ad63aaa 251 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 4 251 9.6E-133 T 14-10-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.127|MetaCyc: PWY-6507|MetaCyc: PWY-7562 YP_3251 ee4fabd533b97eb4546e48da82750e8f 782 Pfam PF16967 E-set like domain 281 348 1.1E-22 T 14-10-2018 IPR032636 Pilus assembly protein, E-set like domain YP_0950 772824f7a8d3f90f8fac5e6d7678f14e 157 Pfam PF07308 Protein of unknown function (DUF1456) 86 153 2.6E-25 T 14-10-2018 IPR009921 Domain of unknown function DUF1456 YP_0950 772824f7a8d3f90f8fac5e6d7678f14e 157 Pfam PF07308 Protein of unknown function (DUF1456) 3 70 3.5E-27 T 14-10-2018 IPR009921 Domain of unknown function DUF1456 YP_0016 de3cbfafce235944bb90a6e7d18fa870 328 Gene3D G3DSA:1.10.510.10 60 258 6.4E-124 T 14-10-2018 YP_0016 de3cbfafce235944bb90a6e7d18fa870 328 Gene3D G3DSA:1.20.1270.170 149 307 6.4E-124 T 14-10-2018 YP_0016 de3cbfafce235944bb90a6e7d18fa870 328 Pfam PF01636 Phosphotransferase enzyme family 33 256 2.4E-46 T 14-10-2018 IPR002575 Aminoglycoside phosphotransferase YP_0016 de3cbfafce235944bb90a6e7d18fa870 328 Hamap MF_01497 Stress response kinase A [srkA]. 4 318 46.178 T 14-10-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 YP_0016 de3cbfafce235944bb90a6e7d18fa870 328 Gene3D G3DSA:3.30.200.70 13 108 6.4E-124 T 14-10-2018 YP_0016 de3cbfafce235944bb90a6e7d18fa870 328 SUPERFAMILY SSF56112 6 327 6.85E-90 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily YP_1003 383a4e4815c609fe07f3c24301031d7d 671 SUPERFAMILY SSF46600 620 667 2.48E-12 T 14-10-2018 IPR036876 UVR domain superfamily YP_1003 383a4e4815c609fe07f3c24301031d7d 671 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 5 664 0.0 T 14-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 YP_1003 383a4e4815c609fe07f3c24301031d7d 671 SMART SM00490 460 546 6.7E-20 T 14-10-2018 IPR001650 Helicase, C-terminal YP_1003 383a4e4815c609fe07f3c24301031d7d 671 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 666 43.871 T 14-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 YP_1003 383a4e4815c609fe07f3c24301031d7d 671 SUPERFAMILY SSF52540 4 415 5.33E-139 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1003 383a4e4815c609fe07f3c24301031d7d 671 SMART SM00487 9 426 3.3E-29 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_1003 383a4e4815c609fe07f3c24301031d7d 671 Gene3D G3DSA:4.10.860.10 611 671 1.8E-21 T 14-10-2018 YP_1003 383a4e4815c609fe07f3c24301031d7d 671 Pfam PF02151 UvrB/uvrC motif 632 666 1.5E-9 T 14-10-2018 IPR001943 UVR domain GO:0005515 YP_1003 383a4e4815c609fe07f3c24301031d7d 671 Pfam PF04851 Type III restriction enzyme, res subunit 15 92 3.7E-9 T 14-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 YP_1003 383a4e4815c609fe07f3c24301031d7d 671 Gene3D G3DSA:3.40.50.300 1 241 2.7E-75 T 14-10-2018 YP_1003 383a4e4815c609fe07f3c24301031d7d 671 SUPERFAMILY SSF52540 37 582 2.39E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1003 383a4e4815c609fe07f3c24301031d7d 671 Gene3D G3DSA:3.40.50.300 415 596 1.6E-48 T 14-10-2018 YP_1003 383a4e4815c609fe07f3c24301031d7d 671 Pfam PF00271 Helicase conserved C-terminal domain 439 544 3.7E-17 T 14-10-2018 IPR001650 Helicase, C-terminal YP_1003 383a4e4815c609fe07f3c24301031d7d 671 Pfam PF12344 Ultra-violet resistance protein B 552 593 6.6E-19 T 14-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain YP_1003 383a4e4815c609fe07f3c24301031d7d 671 Gene3D G3DSA:3.40.50.300 275 414 3.0E-52 T 14-10-2018 YP_1063 e0fcf45f92b9713a075f527a438b8aec 298 Pfam PF12835 Integrase 105 253 8.1E-62 T 14-10-2018 IPR024456 Integrase catalytic domain, putative YP_1063 e0fcf45f92b9713a075f527a438b8aec 298 Pfam PF12834 Phage integrase, N-terminal 4 94 9.7E-41 T 14-10-2018 IPR024457 Putative integrase, N-terminal YP_1063 e0fcf45f92b9713a075f527a438b8aec 298 SUPERFAMILY SSF56349 17 257 1.12E-17 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YP_1063 e0fcf45f92b9713a075f527a438b8aec 298 Gene3D G3DSA:1.10.443.10 115 292 2.5E-6 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YP_1063 e0fcf45f92b9713a075f527a438b8aec 298 Gene3D G3DSA:1.10.150.130 11 103 6.3E-8 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal YP_1392 fc2f023f78d8685a7af4915e97165ac0 379 SUPERFAMILY SSF50129 321 372 3.72E-12 T 14-10-2018 IPR011032 GroES-like superfamily YP_1392 fc2f023f78d8685a7af4915e97165ac0 379 SUPERFAMILY SSF51735 163 337 2.56E-49 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1392 fc2f023f78d8685a7af4915e97165ac0 379 SMART SM00829 13 370 5.0E-4 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 YP_1392 fc2f023f78d8685a7af4915e97165ac0 379 Gene3D G3DSA:3.40.50.720 177 315 4.7E-156 T 14-10-2018 YP_1392 fc2f023f78d8685a7af4915e97165ac0 379 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 5 372 6.3E-224 T 14-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 YP_1392 fc2f023f78d8685a7af4915e97165ac0 379 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 64 78 - T 14-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 YP_1392 fc2f023f78d8685a7af4915e97165ac0 379 Pfam PF00107 Zinc-binding dehydrogenase 200 327 5.0E-24 T 14-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 YP_1392 fc2f023f78d8685a7af4915e97165ac0 379 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 129 4.8E-25 T 14-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 YP_1392 fc2f023f78d8685a7af4915e97165ac0 379 Gene3D G3DSA:3.90.180.10 9 367 4.7E-156 T 14-10-2018 YP_1392 fc2f023f78d8685a7af4915e97165ac0 379 SUPERFAMILY SSF50129 2 190 7.0E-74 T 14-10-2018 IPR011032 GroES-like superfamily YP_1158 e04023b866ed1d90f6d14c536fb8143d 735 Pfam PF09925 Predicted membrane protein (DUF2157) 29 164 9.9E-28 T 14-10-2018 IPR018677 Domain of unknown function DUF2157 YP_1158 e04023b866ed1d90f6d14c536fb8143d 735 Pfam PF14351 Domain of unknown function (DUF4401) 394 724 5.1E-53 T 14-10-2018 IPR025513 Domain of unknown function DUF4401 YP_1511 1f22ac3464eaa53777df7d2283f78fe1 119 Pfam PF04717 Type VI secretion system, phage-baseplate injector 43 108 3.0E-24 T 14-10-2018 IPR006531 Gp5 N-terminal YP_1511 1f22ac3464eaa53777df7d2283f78fe1 119 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 43 108 2.6E-23 T 14-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 YP_1511 1f22ac3464eaa53777df7d2283f78fe1 119 Gene3D G3DSA:2.40.50.230 39 117 1.1E-25 T 14-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YP_pCD24 2fa4caa72b68e2b82907051ab1adc28e 244 Pfam PF01514 Secretory protein of YscJ/FliF family 9 186 1.1E-24 T 14-10-2018 IPR006182 Secretory protein YscJ/FliF YP_pCD24 2fa4caa72b68e2b82907051ab1adc28e 244 Gene3D G3DSA:3.30.70.1530 19 90 1.2E-27 T 14-10-2018 YP_pCD24 2fa4caa72b68e2b82907051ab1adc28e 244 TIGRFAM TIGR02544 III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family 4 193 2.9E-74 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YP_pCD24 2fa4caa72b68e2b82907051ab1adc28e 244 Gene3D G3DSA:3.30.300.30 92 199 4.9E-38 T 14-10-2018 YP_pCD24 2fa4caa72b68e2b82907051ab1adc28e 244 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 165 177 5.1E-30 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YP_pCD24 2fa4caa72b68e2b82907051ab1adc28e 244 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 76 89 5.1E-30 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YP_pCD24 2fa4caa72b68e2b82907051ab1adc28e 244 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 96 111 5.1E-30 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YP_pCD24 2fa4caa72b68e2b82907051ab1adc28e 244 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 24 34 5.1E-30 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YP_pCD24 2fa4caa72b68e2b82907051ab1adc28e 244 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 116 129 5.1E-30 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YP_0208 3476b68d211c1d01328d01318d8bbe2d 201 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 13 198 1.7E-74 T 14-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0208 3476b68d211c1d01328d01318d8bbe2d 201 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 4 201 33.968 T 14-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0208 3476b68d211c1d01328d01318d8bbe2d 201 Pfam PF00573 Ribosomal protein L4/L1 family 13 198 4.1E-64 T 14-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 YP_0208 3476b68d211c1d01328d01318d8bbe2d 201 Gene3D G3DSA:3.40.1370.10 3 201 2.8E-68 T 14-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 YP_0208 3476b68d211c1d01328d01318d8bbe2d 201 SUPERFAMILY SSF52166 10 200 7.06E-73 T 14-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 YP_1142 6b6e9092b007ea7e8094a39fb1685c16 787 Gene3D G3DSA:1.10.3810.10 46 243 3.0E-46 T 14-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_1142 6b6e9092b007ea7e8094a39fb1685c16 787 Pfam PF00912 Transglycosylase 63 213 2.3E-44 T 14-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_1142 6b6e9092b007ea7e8094a39fb1685c16 787 Gene3D G3DSA:3.40.710.10 253 622 2.8E-73 T 14-10-2018 YP_1142 6b6e9092b007ea7e8094a39fb1685c16 787 Pfam PF00905 Penicillin binding protein transpeptidase domain 316 530 2.4E-17 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 YP_1142 6b6e9092b007ea7e8094a39fb1685c16 787 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 36 784 5.3E-297 T 14-10-2018 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_1142 6b6e9092b007ea7e8094a39fb1685c16 787 SUPERFAMILY SSF53955 42 262 7.59E-53 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_1142 6b6e9092b007ea7e8094a39fb1685c16 787 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 697 781 3.5E-14 T 14-10-2018 IPR009647 Penicillin-binding, C-terminal KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_1142 6b6e9092b007ea7e8094a39fb1685c16 787 SUPERFAMILY SSF56601 264 648 9.05E-93 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YP_1143 3e0bfbb42015254264c00a0dddf252e4 100 SUPERFAMILY SSF47413 22 89 4.5E-28 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_1143 3e0bfbb42015254264c00a0dddf252e4 100 Gene3D G3DSA:1.10.260.40 18 88 5.7E-32 T 14-10-2018 YP_1143 3e0bfbb42015254264c00a0dddf252e4 100 Pfam PF13693 Winged helix-turn-helix DNA-binding 24 94 3.9E-33 T 14-10-2018 IPR038722 Ner, winged helix-turn-helix DNA-binding domain YP_2941 e47c076c099f711aa3b0ce09e3563041 483 Pfam PF03553 Na+/H+ antiporter family 17 188 2.8E-10 T 14-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 YP_1355 9a92921df9fd79194889e8aa09cf8657 282 SUPERFAMILY SSF52151 6 282 1.26E-51 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YP_1355 9a92921df9fd79194889e8aa09cf8657 282 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 8 281 2.1E-16 T 14-10-2018 IPR020801 Polyketide synthase, acyl transferase domain YP_1355 9a92921df9fd79194889e8aa09cf8657 282 PIRSF PIRSF000446 2 282 3.6E-68 T 14-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 YP_1355 9a92921df9fd79194889e8aa09cf8657 282 SUPERFAMILY SSF55048 124 191 4.05E-12 T 14-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YP_1355 9a92921df9fd79194889e8aa09cf8657 282 Pfam PF00698 Acyl transferase domain 8 231 2.0E-18 T 14-10-2018 IPR014043 Acyl transferase YP_1355 9a92921df9fd79194889e8aa09cf8657 282 Gene3D G3DSA:3.40.366.10 8 277 2.3E-75 T 14-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 YP_1355 9a92921df9fd79194889e8aa09cf8657 282 Gene3D G3DSA:3.30.70.250 123 190 2.3E-75 T 14-10-2018 YP_0376 a8916df1f6d8b6172c6ef7aee76ebb8e 314 SUPERFAMILY SSF100950 64 314 1.17E-65 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_0376 a8916df1f6d8b6172c6ef7aee76ebb8e 314 Gene3D G3DSA:1.10.10.60 1 53 3.7E-17 T 14-10-2018 YP_0376 a8916df1f6d8b6172c6ef7aee76ebb8e 314 Pfam PF04198 Putative sugar-binding domain 64 314 1.6E-62 T 14-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 YP_0376 a8916df1f6d8b6172c6ef7aee76ebb8e 314 SUPERFAMILY SSF46785 13 55 8.71E-5 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0376 a8916df1f6d8b6172c6ef7aee76ebb8e 314 Pfam PF01047 MarR family 14 51 9.7E-6 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YP_0376 a8916df1f6d8b6172c6ef7aee76ebb8e 314 Gene3D G3DSA:3.40.50.1360 54 313 1.7E-82 T 14-10-2018 YP_3884 fe2dd51199988809a7b22ce1f274faa7 388 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 60 388 55.623 T 14-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 YP_3884 fe2dd51199988809a7b22ce1f274faa7 388 Gene3D G3DSA:3.90.420.10 118 388 9.4E-120 T 14-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 YP_3884 fe2dd51199988809a7b22ce1f274faa7 388 SUPERFAMILY SSF56524 125 384 6.41E-93 T 14-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 YP_3884 fe2dd51199988809a7b22ce1f274faa7 388 Pfam PF00174 Oxidoreductase molybdopterin binding domain 162 321 3.4E-28 T 14-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 YP_pCD12 f8c1f2424b43123edb1b60e86f6587a5 149 SUPERFAMILY SSF69635 2 125 2.51E-24 T 14-10-2018 YP_pCD12 f8c1f2424b43123edb1b60e86f6587a5 149 Gene3D G3DSA:3.30.1460.10 1 125 4.1E-20 T 14-10-2018 YP_0204 96055f2032bce55f850cd698f59e4ab5 64 Gene3D G3DSA:1.10.10.1100 1 57 1.2E-19 T 14-10-2018 YP_0204 96055f2032bce55f850cd698f59e4ab5 64 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 52 8.9E-15 T 14-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain YP_pCD43 2e212446f5366c960124d19e0bf3499e 439 TIGRFAM TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase 21 438 1.7E-198 T 14-10-2018 IPR013380 ATPase, type III secretion system, H+-transporting GO:0005524|GO:0005737|GO:0006754|GO:0030254|GO:0030257|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_pCD43 2e212446f5366c960124d19e0bf3499e 439 SUPERFAMILY SSF52540 95 364 1.36E-95 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pCD43 2e212446f5366c960124d19e0bf3499e 439 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 19 438 6.4E-172 T 14-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_pCD43 2e212446f5366c960124d19e0bf3499e 439 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 349 358 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_pCD43 2e212446f5366c960124d19e0bf3499e 439 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 27 92 5.9E-12 T 14-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_pCD43 2e212446f5366c960124d19e0bf3499e 439 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 358 9.2E-78 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YP_pCD43 2e212446f5366c960124d19e0bf3499e 439 Gene3D G3DSA:3.40.50.12240 18 439 1.4E-151 T 14-10-2018 YP_pCD43 2e212446f5366c960124d19e0bf3499e 439 SMART SM00382 161 342 4.6E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1760 8a2e0d013fb43cb2e1fc91339f919712 278 SUPERFAMILY SSF52467 41 267 1.37E-74 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily YP_1760 8a2e0d013fb43cb2e1fc91339f919712 278 Gene3D G3DSA:3.30.1600.10 55 191 4.0E-82 T 14-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily YP_1760 8a2e0d013fb43cb2e1fc91339f919712 278 Gene3D G3DSA:3.40.50.1220 41 261 4.0E-82 T 14-10-2018 YP_1760 8a2e0d013fb43cb2e1fc91339f919712 278 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 39 269 58.908 T 14-10-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 YP_1760 8a2e0d013fb43cb2e1fc91339f919712 278 Pfam PF02146 Sir2 family 46 219 1.3E-51 T 14-10-2018 IPR003000 Sirtuin family GO:0070403 YP_3074 84b4c9c911659250bc0840e856501387 369 Gene3D G3DSA:3.40.50.300 1 238 1.2E-74 T 14-10-2018 YP_3074 84b4c9c911659250bc0840e856501387 369 SUPERFAMILY SSF52540 4 243 2.05E-85 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3074 84b4c9c911659250bc0840e856501387 369 Pfam PF00005 ABC transporter 21 161 3.2E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3074 84b4c9c911659250bc0840e856501387 369 Gene3D G3DSA:2.40.50.140 292 345 2.2E-29 T 14-10-2018 YP_3074 84b4c9c911659250bc0840e856501387 369 Pfam PF08402 TOBE domain 281 353 2.6E-11 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YP_3074 84b4c9c911659250bc0840e856501387 369 SUPERFAMILY SSF50331 236 362 4.86E-32 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YP_3074 84b4c9c911659250bc0840e856501387 369 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3074 84b4c9c911659250bc0840e856501387 369 SMART SM00382 28 211 7.6E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3074 84b4c9c911659250bc0840e856501387 369 Gene3D G3DSA:2.40.50.100 239 291 6.8E-19 T 14-10-2018 YP_3703 abfa1051e2ef1c9332e70b738152bd0a 177 Gene3D G3DSA:3.10.50.40 35 163 8.5E-39 T 14-10-2018 YP_3703 abfa1051e2ef1c9332e70b738152bd0a 177 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 26 96 1.6E-12 T 14-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YP_3703 abfa1051e2ef1c9332e70b738152bd0a 177 SUPERFAMILY SSF54534 26 164 2.36E-34 T 14-10-2018 YP_3703 abfa1051e2ef1c9332e70b738152bd0a 177 Gene3D G3DSA:2.40.10.330 94 150 8.5E-39 T 14-10-2018 YP_1344 6ba3fcce45a676dbac875e038805e275 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YP_1344 6ba3fcce45a676dbac875e038805e275 248 Gene3D G3DSA:3.40.50.720 1 248 1.5E-75 T 14-10-2018 YP_1344 6ba3fcce45a676dbac875e038805e275 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 246 5.2E-62 T 14-10-2018 YP_1344 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.8E-10 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1344 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.8E-10 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1344 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.8E-10 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1344 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 3.9E-37 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1344 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 3.9E-37 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1344 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 3.9E-37 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1344 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.9E-37 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1344 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 3.9E-37 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1344 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 3.9E-37 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1344 6ba3fcce45a676dbac875e038805e275 248 SUPERFAMILY SSF51735 2 247 3.04E-74 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3124 c069bff5c66981490f5f952b7e1e298d 258 Gene3D G3DSA:3.40.1160.10 1 258 2.7E-73 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YP_3124 c069bff5c66981490f5f952b7e1e298d 258 Hamap MF_00082 Acetylglutamate kinase [argB]. 2 251 43.884 T 14-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YP_3124 c069bff5c66981490f5f952b7e1e298d 258 Pfam PF00696 Amino acid kinase family 5 235 1.2E-39 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 YP_3124 c069bff5c66981490f5f952b7e1e298d 258 TIGRFAM TIGR00761 argB: acetylglutamate kinase 5 234 1.8E-73 T 14-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YP_3124 c069bff5c66981490f5f952b7e1e298d 258 PIRSF PIRSF000728 1 258 4.0E-71 T 14-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YP_3124 c069bff5c66981490f5f952b7e1e298d 258 SUPERFAMILY SSF53633 1 256 6.28E-59 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YP_3878 be12eeaecdff1ab3478bbadafd94e89f 199 TIGRFAM TIGR00172 maf: septum formation protein Maf 4 184 3.4E-63 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 YP_3878 be12eeaecdff1ab3478bbadafd94e89f 199 Pfam PF02545 Maf-like protein 6 186 5.9E-57 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 YP_3878 be12eeaecdff1ab3478bbadafd94e89f 199 Hamap MF_00528 Septum formation protein Maf [maf]. 5 191 31.197 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 YP_3878 be12eeaecdff1ab3478bbadafd94e89f 199 Gene3D G3DSA:3.90.950.10 4 191 3.0E-72 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like YP_3878 be12eeaecdff1ab3478bbadafd94e89f 199 PIRSF PIRSF006305 2 193 9.8E-50 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 YP_3878 be12eeaecdff1ab3478bbadafd94e89f 199 SUPERFAMILY SSF52972 2 186 1.37E-59 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like YP_0922 43fe6b1ccc82963b02cfcdbdeabf8f46 242 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 16 234 9.0E-89 T 14-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 YP_0922 43fe6b1ccc82963b02cfcdbdeabf8f46 242 SUPERFAMILY SSF53335 18 235 3.34E-44 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0922 43fe6b1ccc82963b02cfcdbdeabf8f46 242 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 16 240 37.402 T 14-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 YP_0922 43fe6b1ccc82963b02cfcdbdeabf8f46 242 Pfam PF13489 Methyltransferase domain 58 192 4.3E-25 T 14-10-2018 YP_0922 43fe6b1ccc82963b02cfcdbdeabf8f46 242 Gene3D G3DSA:3.40.50.150 16 240 6.8E-75 T 14-10-2018 YP_3286 be3f866ea3256aad93926d701766fb6d 177 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 14-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 YP_3286 be3f866ea3256aad93926d701766fb6d 177 Pfam PF12724 Flavodoxin domain 4 151 3.8E-56 T 14-10-2018 IPR026816 Flavodoxin domain YP_3286 be3f866ea3256aad93926d701766fb6d 177 SUPERFAMILY SSF52218 1 169 5.9E-35 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_3286 be3f866ea3256aad93926d701766fb6d 177 Gene3D G3DSA:3.40.50.360 1 110 1.4E-14 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_1761 01298fcb6ee7d4ab41f2f8488a134024 421 Pfam PF07687 Peptidase dimerisation domain 216 313 1.6E-11 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain YP_1761 01298fcb6ee7d4ab41f2f8488a134024 421 PIRSF PIRSF037215 9 418 1.1E-183 T 14-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 YP_1761 01298fcb6ee7d4ab41f2f8488a134024 421 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 83 92 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 YP_1761 01298fcb6ee7d4ab41f2f8488a134024 421 Pfam PF01546 Peptidase family M20/M25/M40 149 410 2.4E-14 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 YP_1761 01298fcb6ee7d4ab41f2f8488a134024 421 Gene3D G3DSA:3.40.630.10 14 410 3.0E-174 T 14-10-2018 YP_1761 01298fcb6ee7d4ab41f2f8488a134024 421 Gene3D G3DSA:3.30.70.360 218 329 3.0E-174 T 14-10-2018 YP_1761 01298fcb6ee7d4ab41f2f8488a134024 421 TIGRFAM TIGR01882 peptidase-T: peptidase T 12 418 2.7E-154 T 14-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 YP_1761 01298fcb6ee7d4ab41f2f8488a134024 421 SUPERFAMILY SSF55031 218 330 7.53E-41 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain YP_1761 01298fcb6ee7d4ab41f2f8488a134024 421 Hamap MF_00550 Peptidase T [pepT]. 11 414 54.757 T 14-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 YP_1761 01298fcb6ee7d4ab41f2f8488a134024 421 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 148 186 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 YP_1761 01298fcb6ee7d4ab41f2f8488a134024 421 SUPERFAMILY SSF53187 11 410 2.77E-78 T 14-10-2018 YP_2717 341f5371cfef77164dbcd102f0dd5fd3 465 Gene3D G3DSA:1.20.1250.20 254 453 3.6E-12 T 14-10-2018 YP_2717 341f5371cfef77164dbcd102f0dd5fd3 465 PRINTS PR01036 Tetracycline resistance protein TetB signature 199 217 2.0E-8 T 14-10-2018 YP_2717 341f5371cfef77164dbcd102f0dd5fd3 465 PRINTS PR01036 Tetracycline resistance protein TetB signature 105 125 2.0E-8 T 14-10-2018 YP_2717 341f5371cfef77164dbcd102f0dd5fd3 465 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 2.0E-8 T 14-10-2018 YP_2717 341f5371cfef77164dbcd102f0dd5fd3 465 PRINTS PR01036 Tetracycline resistance protein TetB signature 396 415 2.0E-8 T 14-10-2018 YP_2717 341f5371cfef77164dbcd102f0dd5fd3 465 PRINTS PR01036 Tetracycline resistance protein TetB signature 135 159 2.0E-8 T 14-10-2018 YP_2717 341f5371cfef77164dbcd102f0dd5fd3 465 Hamap MF_01577 Putative multidrug resistance protein MdtD [mdtD]. 1 465 42.468 T 14-10-2018 IPR023721 Multidrug resistance protein MdtD, putative YP_2717 341f5371cfef77164dbcd102f0dd5fd3 465 SUPERFAMILY SSF103473 9 451 9.29E-58 T 14-10-2018 IPR036259 MFS transporter superfamily YP_2717 341f5371cfef77164dbcd102f0dd5fd3 465 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 16 433 7.0E-69 T 14-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 YP_2717 341f5371cfef77164dbcd102f0dd5fd3 465 Pfam PF07690 Major Facilitator Superfamily 15 405 1.1E-43 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_2717 341f5371cfef77164dbcd102f0dd5fd3 465 Gene3D G3DSA:1.20.1720.10 12 253 1.0E-44 T 14-10-2018 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 SMART SM00220 149 408 1.8E-5 T 14-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 330 350 7.5E-154 T 14-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 24 47 7.5E-154 T 14-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 218 237 7.5E-154 T 14-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 503 525 7.5E-154 T 14-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 381 401 7.5E-154 T 14-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 637 658 7.5E-154 T 14-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 180 205 7.5E-154 T 14-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 423 444 7.5E-154 T 14-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 108 130 7.5E-154 T 14-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 557 574 7.5E-154 T 14-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 672 692 7.5E-154 T 14-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 Gene3D G3DSA:1.10.510.10 149 434 7.9E-18 T 14-10-2018 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 Pfam PF09632 Rac1-binding domain 436 732 5.2E-208 T 14-10-2018 IPR019093 Rac1-binding domain KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 266 278 - T 14-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 Pfam PF00069 Protein kinase domain 188 408 2.6E-11 T 14-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 SUPERFAMILY SSF56112 154 410 1.15E-20 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 Gene3D G3DSA:1.20.120.1330 435 581 1.7E-99 T 14-10-2018 YP_pCD13 b3e055eb8fd37f085ba9701c251b3069 732 Gene3D G3DSA:1.20.58.1230 585 732 1.6E-85 T 14-10-2018 YP_0676 66ce5274422f3f7df31cf08e554fc165 262 Gene3D G3DSA:3.40.190.10 27 245 2.8E-53 T 14-10-2018 YP_0676 66ce5274422f3f7df31cf08e554fc165 262 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 58 71 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site YP_0676 66ce5274422f3f7df31cf08e554fc165 262 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 253 1.1E-46 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_0676 66ce5274422f3f7df31cf08e554fc165 262 SUPERFAMILY SSF53850 5 254 5.22E-53 T 14-10-2018 YP_0676 66ce5274422f3f7df31cf08e554fc165 262 Gene3D G3DSA:3.40.190.10 122 213 2.8E-53 T 14-10-2018 YP_0676 66ce5274422f3f7df31cf08e554fc165 262 SMART SM00062 35 255 2.5E-40 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_2023 4ac3db8bb27597f13ded835289d0bbf7 107 Pfam PF06305 Lipopolysaccharide assembly protein A domain 27 90 3.8E-19 T 14-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 YP_2023 4ac3db8bb27597f13ded835289d0bbf7 107 Hamap MF_01948 Lipopolysaccharide assembly protein A [lapA]. 5 98 21.939 T 14-10-2018 IPR032906 Lipopolysaccharide assembly protein A GO:0005886|GO:0008653 YP_1473 444823f37da04cd8be1bac2ba62b9cbf 99 Pfam PF03795 YCII-related domain 6 84 3.8E-10 T 14-10-2018 IPR005545 YCII-related YP_1473 444823f37da04cd8be1bac2ba62b9cbf 99 SUPERFAMILY SSF54909 6 86 1.1E-13 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel YP_0579 524f9a37afb9fd3e90e1f58a348a1b3b 97 SUPERFAMILY SSF75471 1 96 7.19E-31 T 14-10-2018 IPR035920 YhbY-like superfamily YP_0579 524f9a37afb9fd3e90e1f58a348a1b3b 97 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 1.3E-22 T 14-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 YP_0579 524f9a37afb9fd3e90e1f58a348a1b3b 97 Gene3D G3DSA:3.30.110.60 1 97 7.6E-37 T 14-10-2018 IPR035920 YhbY-like superfamily YP_0579 524f9a37afb9fd3e90e1f58a348a1b3b 97 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 94 5.6E-38 T 14-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 YP_0579 524f9a37afb9fd3e90e1f58a348a1b3b 97 SMART SM01103 3 86 7.0E-41 T 14-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 YP_0579 524f9a37afb9fd3e90e1f58a348a1b3b 97 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 97 2.0E-44 T 14-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 YP_2670 b62ac91d5c5df225539dcaa4f5a1acaa 365 Pfam PF00005 ABC transporter 28 176 4.3E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2670 b62ac91d5c5df225539dcaa4f5a1acaa 365 Gene3D G3DSA:3.40.50.300 4 253 2.0E-75 T 14-10-2018 YP_2670 b62ac91d5c5df225539dcaa4f5a1acaa 365 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2670 b62ac91d5c5df225539dcaa4f5a1acaa 365 SMART SM00382 37 226 8.4E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2670 b62ac91d5c5df225539dcaa4f5a1acaa 365 SUPERFAMILY SSF50331 252 339 1.53E-5 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YP_2670 b62ac91d5c5df225539dcaa4f5a1acaa 365 SUPERFAMILY SSF52540 13 258 9.22E-81 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3876 8589df107d16d8005b572f87da41eabb 1307 Pfam PF13502 AsmA-like C-terminal region 1051 1293 1.2E-59 T 14-10-2018 IPR032712 AsmA-like, C-terminal YP_3876 8589df107d16d8005b572f87da41eabb 1307 Pfam PF13116 Protein of unknown function 511 795 2.8E-97 T 14-10-2018 IPR025263 Domain of unknown function DUF3971 YP_3876 8589df107d16d8005b572f87da41eabb 1307 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 2 1304 0.0 T 14-10-2018 IPR011836 Conserved hypothetical protein CHP02099 YP_0132 3a20f28cb95ef93f9fe10c53676daffb 85 Pfam PF09012 FeoC like transcriptional regulator 3 77 1.1E-19 T 14-10-2018 IPR015102 Transcriptional regulator HTH-type, FeoC YP_0132 3a20f28cb95ef93f9fe10c53676daffb 85 Hamap MF_01586 Probable [Fe-S]-dependent transcriptional repressor [feoC]. 1 79 26.24 T 14-10-2018 IPR023732 Probable [Fe-S]-dependent transcriptional repressor YP_0132 3a20f28cb95ef93f9fe10c53676daffb 85 SUPERFAMILY SSF46785 1 75 7.8E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0132 3a20f28cb95ef93f9fe10c53676daffb 85 Gene3D G3DSA:1.10.10.10 1 80 3.0E-36 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0790 1aa584616d89ed5ff205c0d92c7f998b 295 Pfam PF13622 Thioesterase-like superfamily 42 291 8.5E-60 T 14-10-2018 YP_0790 1aa584616d89ed5ff205c0d92c7f998b 295 SUPERFAMILY SSF54637 125 292 2.99E-62 T 14-10-2018 IPR029069 HotDog domain superfamily YP_0790 1aa584616d89ed5ff205c0d92c7f998b 295 SUPERFAMILY SSF54637 14 123 4.24E-42 T 14-10-2018 IPR029069 HotDog domain superfamily YP_0790 1aa584616d89ed5ff205c0d92c7f998b 295 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 21 292 5.5E-102 T 14-10-2018 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 YP_0790 1aa584616d89ed5ff205c0d92c7f998b 295 Gene3D G3DSA:3.10.129.90 10 295 1.0E-117 T 14-10-2018 YP_0236 58cddef74313a5cc9f5cba2b9bccf696 140 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 6 135 3.9E-45 T 14-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L YP_0236 58cddef74313a5cc9f5cba2b9bccf696 140 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 6 136 24.165 T 14-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 YP_0236 58cddef74313a5cc9f5cba2b9bccf696 140 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 9 23 3.8E-12 T 14-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 YP_0236 58cddef74313a5cc9f5cba2b9bccf696 140 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 87 95 3.8E-12 T 14-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 YP_0236 58cddef74313a5cc9f5cba2b9bccf696 140 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 96 105 3.8E-12 T 14-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 YP_0236 58cddef74313a5cc9f5cba2b9bccf696 140 Gene3D G3DSA:1.10.1200.120 6 138 3.7E-42 T 14-10-2018 IPR036019 Gated mechanosensitive channel YP_0236 58cddef74313a5cc9f5cba2b9bccf696 140 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 16 29 - T 14-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site YP_0236 58cddef74313a5cc9f5cba2b9bccf696 140 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 6 137 2.1E-54 T 14-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 YP_0236 58cddef74313a5cc9f5cba2b9bccf696 140 SUPERFAMILY SSF81330 15 131 4.58E-35 T 14-10-2018 IPR036019 Gated mechanosensitive channel YP_1554 47df54d9d7d95ad4327efd84a7ce1a31 137 Hamap MF_01180 Flagellar protein FliT [fliT]. 18 137 25.801 T 14-10-2018 IPR008622 Flagellar protein FliT YP_1554 47df54d9d7d95ad4327efd84a7ce1a31 137 Pfam PF05400 Flagellar protein FliT 38 123 8.8E-20 T 14-10-2018 IPR008622 Flagellar protein FliT YP_1554 47df54d9d7d95ad4327efd84a7ce1a31 137 Gene3D G3DSA:1.20.58.380 13 127 1.3E-32 T 14-10-2018 YP_1581 11448bf577f16d946dbbd8da7b6f70af 358 Pfam PF02653 Branched-chain amino acid transport system / permease component 56 330 2.8E-25 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_1423 691d841afbb1789d5bd2ac025eef3878 346 Pfam PF01032 FecCD transport family 35 339 8.3E-75 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YP_1423 691d841afbb1789d5bd2ac025eef3878 346 Gene3D G3DSA:1.10.3470.10 21 345 1.9E-71 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_1423 691d841afbb1789d5bd2ac025eef3878 346 SUPERFAMILY SSF81345 20 339 4.32E-58 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_3362 81f7fca0c7730009df0ef4e6c1599eb5 326 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3362 81f7fca0c7730009df0ef4e6c1599eb5 326 Pfam PF00005 ABC transporter 24 181 1.4E-26 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3362 81f7fca0c7730009df0ef4e6c1599eb5 326 SUPERFAMILY SSF52540 32 304 4.61E-65 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3362 81f7fca0c7730009df0ef4e6c1599eb5 326 Gene3D G3DSA:3.40.50.300 1 321 4.3E-93 T 14-10-2018 YP_3362 81f7fca0c7730009df0ef4e6c1599eb5 326 SMART SM00382 32 231 4.0E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3362 81f7fca0c7730009df0ef4e6c1599eb5 326 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 9.0E-19 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YP_3362 81f7fca0c7730009df0ef4e6c1599eb5 326 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 315 3.1E-26 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YP_2186 117f5e0088b51c30f7556eba55c68e3b 187 Pfam PF02657 Fe-S metabolism associated domain 59 179 9.0E-43 T 14-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like YP_2186 117f5e0088b51c30f7556eba55c68e3b 187 Gene3D G3DSA:3.90.1010.10 45 185 1.0E-50 T 14-10-2018 YP_2186 117f5e0088b51c30f7556eba55c68e3b 187 SUPERFAMILY SSF82649 41 182 5.75E-46 T 14-10-2018 YP_2186 117f5e0088b51c30f7556eba55c68e3b 187 Hamap MF_01832 Cysteine desulfuration protein SufE [sufE]. 48 185 43.434 T 14-10-2018 IPR023939 Cysteine desulfuration protein SufE GO:0006790|GO:0016226 YP_1108 07406b49262ee00ba0b5bc71d1ac5ee7 156 PIRSF PIRSF004505 1 155 5.5E-40 T 14-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 YP_1108 07406b49262ee00ba0b5bc71d1ac5ee7 156 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 26.47 T 14-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 YP_1108 07406b49262ee00ba0b5bc71d1ac5ee7 156 SUPERFAMILY SSF75217 2 154 2.62E-48 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases YP_1108 07406b49262ee00ba0b5bc71d1ac5ee7 156 Pfam PF02590 Predicted SPOUT methyltransferase 2 154 4.9E-46 T 14-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 YP_1108 07406b49262ee00ba0b5bc71d1ac5ee7 156 Gene3D G3DSA:3.40.1280.10 1 156 4.2E-51 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YP_1108 07406b49262ee00ba0b5bc71d1ac5ee7 156 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 1 156 3.3E-82 T 14-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 YP_2545 1e929a88e07fba04ea99e462ea391b5c 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 14-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 YP_2545 1e929a88e07fba04ea99e462ea391b5c 112 SMART SM00938 4 105 9.7E-69 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YP_2545 1e929a88e07fba04ea99e462ea391b5c 112 PRINTS PR00340 P-II protein signature 83 103 1.2E-44 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YP_2545 1e929a88e07fba04ea99e462ea391b5c 112 PRINTS PR00340 P-II protein signature 2 17 1.2E-44 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YP_2545 1e929a88e07fba04ea99e462ea391b5c 112 PRINTS PR00340 P-II protein signature 23 41 1.2E-44 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YP_2545 1e929a88e07fba04ea99e462ea391b5c 112 PRINTS PR00340 P-II protein signature 52 75 1.2E-44 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YP_2545 1e929a88e07fba04ea99e462ea391b5c 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.4E-44 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YP_2545 1e929a88e07fba04ea99e462ea391b5c 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 14-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 YP_2545 1e929a88e07fba04ea99e462ea391b5c 112 Gene3D G3DSA:3.30.70.120 1 112 7.8E-49 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YP_2545 1e929a88e07fba04ea99e462ea391b5c 112 SUPERFAMILY SSF54913 1 112 5.4E-47 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta YP_2545 1e929a88e07fba04ea99e462ea391b5c 112 PIRSF PIRSF039144 1 112 4.4E-58 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YP_2902 ae4821833333181d0aa87d098c99ab84 176 Pfam PF10688 Bacterial inner membrane protein 5 162 7.9E-53 T 14-10-2018 IPR019629 Uncharacterised protein family HI1736/YgjV YP_2902 ae4821833333181d0aa87d098c99ab84 176 PIRSF PIRSF011443 1 176 2.3E-60 T 14-10-2018 IPR026267 Inner membrane protein YgjV YP_3324 b8f191d6e81432d104ec117c3d68c3b5 227 SUPERFAMILY SSF51182 82 175 9.45E-5 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily YP_3324 b8f191d6e81432d104ec117c3d68c3b5 227 Pfam PF07385 D-lyxose isomerase 1 223 1.5E-100 T 14-10-2018 IPR010864 D-lyxose isomerase KEGG: 00040+5.3.1.15 YP_3324 b8f191d6e81432d104ec117c3d68c3b5 227 Gene3D G3DSA:2.60.120.10 2 227 7.7E-90 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_1759 6504418c165c5f20b1a1c40baaa697e1 55 SUPERFAMILY SSF53067 1 52 1.69E-7 T 14-10-2018 YP_1759 6504418c165c5f20b1a1c40baaa697e1 55 Gene3D G3DSA:3.30.420.40 1 41 2.1E-8 T 14-10-2018 YP_1759 6504418c165c5f20b1a1c40baaa697e1 55 Pfam PF00480 ROK family 1 52 6.6E-7 T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YP_3348 d6f31f6d28f9e4b28af2c85c66eae111 360 Pfam PF03631 Virulence factor BrkB 63 320 3.5E-45 T 14-10-2018 IPR017039 Virulence factor BrkB YP_3348 d6f31f6d28f9e4b28af2c85c66eae111 360 PIRSF PIRSF035875 39 342 4.6E-24 T 14-10-2018 IPR017039 Virulence factor BrkB YP_3348 d6f31f6d28f9e4b28af2c85c66eae111 360 TIGRFAM TIGR00766 TIGR00766: inner membrane protein YhjD 49 321 9.8E-121 T 14-10-2018 IPR005274 Inner membrane protein YhjD YP_1544 5c182221e98baa2cecdb21c4bf61a3a8 131 Gene3D G3DSA:1.10.10.10 7 123 2.9E-6 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1544 5c182221e98baa2cecdb21c4bf61a3a8 131 SUPERFAMILY SSF46785 57 109 1.05E-6 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0796 0ae7c15400a099c15f6340fee359fa55 47 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0796 0ae7c15400a099c15f6340fee359fa55 47 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 17 41 0.002 T 14-10-2018 YP_0796 0ae7c15400a099c15f6340fee359fa55 47 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 17.15 T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0796 0ae7c15400a099c15f6340fee359fa55 47 SUPERFAMILY SSF57840 8 41 7.59E-14 T 14-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0796 0ae7c15400a099c15f6340fee359fa55 47 Pfam PF00444 Ribosomal protein L36 1 41 2.6E-17 T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0796 0ae7c15400a099c15f6340fee359fa55 47 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 9 41 1.5E-9 T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_3144 83f29f6548ec01705871670b25a500e7 293 SUPERFAMILY SSF53850 90 283 4.34E-24 T 14-10-2018 YP_3144 83f29f6548ec01705871670b25a500e7 293 Pfam PF03466 LysR substrate binding domain 88 279 1.2E-22 T 14-10-2018 IPR005119 LysR, substrate-binding YP_3144 83f29f6548ec01705871670b25a500e7 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.3E-20 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3144 83f29f6548ec01705871670b25a500e7 293 Hamap MF_01233 HTH-type transcriptional regulator HdfR [hdfR]. 1 284 50.958 T 14-10-2018 IPR020890 Transcription regulator HTH, HdfR GO:0003677|GO:0003700|GO:0045892 YP_3144 83f29f6548ec01705871670b25a500e7 293 Gene3D G3DSA:1.10.10.10 1 83 3.2E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3144 83f29f6548ec01705871670b25a500e7 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.5E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3144 83f29f6548ec01705871670b25a500e7 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.5E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3144 83f29f6548ec01705871670b25a500e7 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.5E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3144 83f29f6548ec01705871670b25a500e7 293 SUPERFAMILY SSF46785 2 81 6.93E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3144 83f29f6548ec01705871670b25a500e7 293 Gene3D G3DSA:3.40.190.290 89 292 7.4E-15 T 14-10-2018 YP_0940 ea5617ac87ac0d4f67b19e2c355224a3 378 PRINTS PR00173 Glutamate-aspartate symporter signature 313 332 2.5E-6 T 14-10-2018 YP_0940 ea5617ac87ac0d4f67b19e2c355224a3 378 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 2.5E-6 T 14-10-2018 YP_0940 ea5617ac87ac0d4f67b19e2c355224a3 378 PRINTS PR00173 Glutamate-aspartate symporter signature 216 235 2.5E-6 T 14-10-2018 YP_0940 ea5617ac87ac0d4f67b19e2c355224a3 378 PRINTS PR00173 Glutamate-aspartate symporter signature 50 70 2.5E-6 T 14-10-2018 YP_0940 ea5617ac87ac0d4f67b19e2c355224a3 378 SUPERFAMILY SSF161098 167 365 2.49E-33 T 14-10-2018 IPR035906 MetI-like superfamily YP_0940 ea5617ac87ac0d4f67b19e2c355224a3 378 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 189 369 2.7E-18 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_0940 ea5617ac87ac0d4f67b19e2c355224a3 378 Gene3D G3DSA:1.10.3720.10 163 371 5.3E-31 T 14-10-2018 IPR035906 MetI-like superfamily YP_0082 8865796c07b044d440dfa1ddb49c1fb9 272 Gene3D G3DSA:3.40.190.10 55 262 2.0E-26 T 14-10-2018 YP_0082 8865796c07b044d440dfa1ddb49c1fb9 272 Pfam PF13531 Bacterial extracellular solute-binding protein 48 269 3.2E-32 T 14-10-2018 YP_0082 8865796c07b044d440dfa1ddb49c1fb9 272 SUPERFAMILY SSF53850 47 271 1.25E-39 T 14-10-2018 YP_0082 8865796c07b044d440dfa1ddb49c1fb9 272 Gene3D G3DSA:3.40.190.10 125 232 2.0E-26 T 14-10-2018 YP_2897 534bf4e1bb58f3da68ce478202a3335a 434 Gene3D G3DSA:1.20.1250.20 215 420 3.6E-27 T 14-10-2018 YP_2897 534bf4e1bb58f3da68ce478202a3335a 434 SUPERFAMILY SSF103473 4 414 2.35E-79 T 14-10-2018 IPR036259 MFS transporter superfamily YP_2897 534bf4e1bb58f3da68ce478202a3335a 434 PIRSF PIRSF002808 1 427 1.8E-33 T 14-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 YP_2897 534bf4e1bb58f3da68ce478202a3335a 434 Pfam PF07690 Major Facilitator Superfamily 18 309 1.2E-46 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_2897 534bf4e1bb58f3da68ce478202a3335a 434 Gene3D G3DSA:1.20.1250.20 1 199 7.8E-46 T 14-10-2018 YP_3528 4a9bd457fea8c9f129ee168637d7fc42 432 Pfam PF08013 Tagatose 6 phosphate kinase 4 424 7.3E-200 T 14-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 YP_3528 4a9bd457fea8c9f129ee168637d7fc42 432 Gene3D G3DSA:1.10.400.20 287 410 2.3E-173 T 14-10-2018 YP_3528 4a9bd457fea8c9f129ee168637d7fc42 432 Gene3D G3DSA:3.20.20.70 8 414 2.3E-173 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3528 4a9bd457fea8c9f129ee168637d7fc42 432 SUPERFAMILY SSF51569 4 425 4.03E-172 T 14-10-2018 YP_3528 4a9bd457fea8c9f129ee168637d7fc42 432 TIGRFAM TIGR02810 agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 6 423 9.0E-198 T 14-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 YP_3528 4a9bd457fea8c9f129ee168637d7fc42 432 PIRSF PIRSF009264 1 429 3.8E-210 T 14-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 YP_0701 b9c412f4bd724962e374c4e678738685 315 Gene3D G3DSA:3.20.20.190 13 315 1.4E-33 T 14-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YP_0701 b9c412f4bd724962e374c4e678738685 315 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 32 153 5.8E-16 T 14-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 YP_0701 b9c412f4bd724962e374c4e678738685 315 SUPERFAMILY SSF51695 25 307 1.99E-44 T 14-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YP_2123 6785b98691b437755f79ebb5125687ee 279 SUPERFAMILY SSF46955 1 103 1.88E-18 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily YP_2123 6785b98691b437755f79ebb5125687ee 279 Pfam PF13411 MerR HTH family regulatory protein 2 67 3.4E-12 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YP_2123 6785b98691b437755f79ebb5125687ee 279 Gene3D G3DSA:1.10.1660.10 1 123 8.0E-19 T 14-10-2018 YP_2123 6785b98691b437755f79ebb5125687ee 279 SMART SM00422 2 70 1.6E-8 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YP_1708 725a8b13ebb064b420dfe1a7692cb5a7 350 Hamap MF_01171 Arginine N-succinyltransferase [astA]. 1 349 74.416 T 14-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 YP_1708 725a8b13ebb064b420dfe1a7692cb5a7 350 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 4 343 9.6E-146 T 14-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 YP_1708 725a8b13ebb064b420dfe1a7692cb5a7 350 SUPERFAMILY SSF55729 1 343 3.82E-132 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_1708 725a8b13ebb064b420dfe1a7692cb5a7 350 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 4 343 1.8E-155 T 14-10-2018 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 YP_1708 725a8b13ebb064b420dfe1a7692cb5a7 350 Gene3D G3DSA:2.40.40.20 273 344 3.4E-11 T 14-10-2018 YP_1708 725a8b13ebb064b420dfe1a7692cb5a7 350 Gene3D G3DSA:3.40.630.30 1 272 1.1E-120 T 14-10-2018 YP_1708 725a8b13ebb064b420dfe1a7692cb5a7 350 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 341 1.8E-143 T 14-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 YP_2065 10e047df657889a0109ae2b6a93a9448 230 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 10 222 24.798 T 14-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 YP_2065 10e047df657889a0109ae2b6a93a9448 230 PIRSF PIRSF006755 9 229 1.9E-68 T 14-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 YP_2065 10e047df657889a0109ae2b6a93a9448 230 Gene3D G3DSA:3.40.50.300 11 228 8.2E-53 T 14-10-2018 YP_2065 10e047df657889a0109ae2b6a93a9448 230 Pfam PF13500 AAA domain 12 213 3.5E-29 T 14-10-2018 YP_2065 10e047df657889a0109ae2b6a93a9448 230 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 14 180 1.0E-43 T 14-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 YP_2065 10e047df657889a0109ae2b6a93a9448 230 SUPERFAMILY SSF52540 9 215 2.33E-55 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2550 adbdaa38548b52671488d312044e1801 182 Pfam PF13505 Outer membrane protein beta-barrel domain 14 182 1.1E-33 T 14-10-2018 IPR027385 Outer membrane protein beta-barrel YP_2550 adbdaa38548b52671488d312044e1801 182 ProSitePatterns PS00694 Enterobacterial virulence outer membrane protein signature 1. 54 62 - T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_2550 adbdaa38548b52671488d312044e1801 182 Gene3D G3DSA:2.40.160.20 26 182 1.8E-64 T 14-10-2018 YP_2550 adbdaa38548b52671488d312044e1801 182 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 174 182 - T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_2550 adbdaa38548b52671488d312044e1801 182 SUPERFAMILY SSF56925 32 182 4.71E-33 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_2550 adbdaa38548b52671488d312044e1801 182 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 53 65 3.0E-36 T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_2550 adbdaa38548b52671488d312044e1801 182 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 143 164 3.0E-36 T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_2550 adbdaa38548b52671488d312044e1801 182 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 96 119 3.0E-36 T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_2550 adbdaa38548b52671488d312044e1801 182 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 170 181 3.0E-36 T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_3917 14439ca4ad5806b18a0d7eb40be503ab 556 Pfam PF00999 Sodium/hydrogen exchanger family 15 428 1.2E-79 T 14-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 YP_3917 14439ca4ad5806b18a0d7eb40be503ab 556 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 14 553 1.6E-206 T 14-10-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 YP_0906 9130887f306c1554f68f29977d7a3a02 437 Pfam PF07005 Putative sugar-binding N-terminal domain 8 235 6.5E-65 T 14-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain YP_0906 9130887f306c1554f68f29977d7a3a02 437 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 272 429 3.0E-40 T 14-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain YP_0906 9130887f306c1554f68f29977d7a3a02 437 Gene3D G3DSA:3.40.980.20 260 436 1.8E-57 T 14-10-2018 YP_0906 9130887f306c1554f68f29977d7a3a02 437 SUPERFAMILY SSF142764 8 434 5.75E-122 T 14-10-2018 YP_0906 9130887f306c1554f68f29977d7a3a02 437 Gene3D G3DSA:3.40.50.10840 5 241 1.1E-78 T 14-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily YP_3482 e85a7541f731657dd616955b81074b15 319 SUPERFAMILY SSF53822 23 314 2.69E-61 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_3482 e85a7541f731657dd616955b81074b15 319 Gene3D G3DSA:3.40.50.2300 128 270 3.6E-70 T 14-10-2018 YP_3482 e85a7541f731657dd616955b81074b15 319 Gene3D G3DSA:3.40.50.2300 28 290 3.6E-70 T 14-10-2018 YP_3482 e85a7541f731657dd616955b81074b15 319 Pfam PF13407 Periplasmic binding protein domain 27 290 4.2E-40 T 14-10-2018 IPR025997 Periplasmic binding protein YP_0553 ded116479bf6731d07281efd95b0ad10 656 Pfam PF00149 Calcineurin-like phosphoesterase 32 267 6.7E-10 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 YP_0553 ded116479bf6731d07281efd95b0ad10 656 PRINTS PR01607 Apyrase family signature 251 274 1.4E-31 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YP_0553 ded116479bf6731d07281efd95b0ad10 656 PRINTS PR01607 Apyrase family signature 436 459 1.4E-31 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YP_0553 ded116479bf6731d07281efd95b0ad10 656 PRINTS PR01607 Apyrase family signature 223 240 1.4E-31 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YP_0553 ded116479bf6731d07281efd95b0ad10 656 PRINTS PR01607 Apyrase family signature 291 311 1.4E-31 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YP_0553 ded116479bf6731d07281efd95b0ad10 656 PRINTS PR01607 Apyrase family signature 30 48 1.4E-31 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YP_0553 ded116479bf6731d07281efd95b0ad10 656 PRINTS PR01607 Apyrase family signature 538 557 1.4E-31 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YP_0553 ded116479bf6731d07281efd95b0ad10 656 SUPERFAMILY SSF56300 27 361 8.02E-85 T 14-10-2018 YP_0553 ded116479bf6731d07281efd95b0ad10 656 ProSitePatterns PS00785 5'-nucleotidase signature 1. 32 44 - T 14-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YP_0553 ded116479bf6731d07281efd95b0ad10 656 ProSitePatterns PS00786 5'-nucleotidase signature 2. 117 128 - T 14-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YP_0553 ded116479bf6731d07281efd95b0ad10 656 SUPERFAMILY SSF55816 363 603 1.57E-37 T 14-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YP_0553 ded116479bf6731d07281efd95b0ad10 656 Pfam PF02872 5'-nucleotidase, C-terminal domain 364 558 4.0E-21 T 14-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YP_0553 ded116479bf6731d07281efd95b0ad10 656 Gene3D G3DSA:3.90.780.10 408 596 3.9E-50 T 14-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YP_0553 ded116479bf6731d07281efd95b0ad10 656 TIGRFAM TIGR01390 CycNucDiestase: 2',3'-cyclic-nucleotide 2'-phosphodiesterase 30 655 0.0 T 14-10-2018 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase GO:0008663|GO:0009117 KEGG: 00230+3.1.4.16+3.1.3.6|KEGG: 00240+3.1.4.16+3.1.3.6 YP_0553 ded116479bf6731d07281efd95b0ad10 656 Gene3D G3DSA:3.60.21.10 24 362 8.8E-149 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like YP_3337 1bb96afedb0c95d7319c71bc29539d8c 680 Pfam PF01432 Peptidase family M3 222 677 8.3E-168 T 14-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 YP_3337 1bb96afedb0c95d7319c71bc29539d8c 680 SUPERFAMILY SSF55486 1 677 1.36E-214 T 14-10-2018 YP_3337 1bb96afedb0c95d7319c71bc29539d8c 680 Gene3D G3DSA:1.10.1370.40 13 675 4.8E-267 T 14-10-2018 YP_3337 1bb96afedb0c95d7319c71bc29539d8c 680 Gene3D G3DSA:1.10.1370.10 140 610 4.8E-267 T 14-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 YP_1251 c404471c3db5f49fd78186180414cb80 261 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1251 c404471c3db5f49fd78186180414cb80 261 Pfam PF00005 ABC transporter 19 160 8.0E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1251 c404471c3db5f49fd78186180414cb80 261 SMART SM00382 28 209 1.1E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1251 c404471c3db5f49fd78186180414cb80 261 Gene3D G3DSA:3.40.50.300 3 239 5.9E-57 T 14-10-2018 YP_1251 c404471c3db5f49fd78186180414cb80 261 SUPERFAMILY SSF52540 4 223 2.11E-50 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2158 e61749eae5d76c79b23e81091b4ca5f0 384 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 18 381 41.236 T 14-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 YP_2158 e61749eae5d76c79b23e81091b4ca5f0 384 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 19 380 3.6E-163 T 14-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 YP_2158 e61749eae5d76c79b23e81091b4ca5f0 384 Gene3D G3DSA:3.30.420.40 25 376 5.4E-132 T 14-10-2018 YP_2158 e61749eae5d76c79b23e81091b4ca5f0 384 SUPERFAMILY SSF53067 20 355 1.01E-27 T 14-10-2018 YP_2158 e61749eae5d76c79b23e81091b4ca5f0 384 Gene3D G3DSA:3.30.420.40 159 341 5.4E-132 T 14-10-2018 YP_2250 4d410033fc23bfb0fac37050149c70b3 341 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 10 337 7.3E-123 T 14-10-2018 IPR003770 Endolytic murein transglycosylase YP_2250 4d410033fc23bfb0fac37050149c70b3 341 Gene3D G3DSA:3.30.160.60 303 341 8.1E-21 T 14-10-2018 YP_2250 4d410033fc23bfb0fac37050149c70b3 341 Pfam PF02618 YceG-like family 44 329 4.6E-83 T 14-10-2018 IPR003770 Endolytic murein transglycosylase YP_2250 4d410033fc23bfb0fac37050149c70b3 341 Gene3D G3DSA:3.30.160.60 72 110 1.9E-24 T 14-10-2018 YP_2250 4d410033fc23bfb0fac37050149c70b3 341 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 9 333 33.755 T 14-10-2018 IPR003770 Endolytic murein transglycosylase YP_2383 853e1cd9f40aebd9e51bd8d559d4de1f 182 PIRSF PIRSF017340 2 171 6.4E-69 T 14-10-2018 IPR024195 NUDIX hydrolase, YfcD, predicted GO:0016817 YP_2383 853e1cd9f40aebd9e51bd8d559d4de1f 182 Pfam PF00293 NUDIX domain 37 150 6.8E-18 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YP_2383 853e1cd9f40aebd9e51bd8d559d4de1f 182 SUPERFAMILY SSF55811 11 167 7.45E-34 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YP_2383 853e1cd9f40aebd9e51bd8d559d4de1f 182 Gene3D G3DSA:3.90.79.10 2 178 9.5E-56 T 14-10-2018 YP_1620 902f3b4e8f99fa4dcce43eddfbfc5ed1 458 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 107 448 1.1E-127 T 14-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 YP_1620 902f3b4e8f99fa4dcce43eddfbfc5ed1 458 PRINTS PR00095 Anthranilate synthase component I signature 292 305 5.8E-16 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YP_1620 902f3b4e8f99fa4dcce43eddfbfc5ed1 458 PRINTS PR00095 Anthranilate synthase component I signature 306 319 5.8E-16 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YP_1620 902f3b4e8f99fa4dcce43eddfbfc5ed1 458 PRINTS PR00095 Anthranilate synthase component I signature 401 415 5.8E-16 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YP_1620 902f3b4e8f99fa4dcce43eddfbfc5ed1 458 PRINTS PR00095 Anthranilate synthase component I signature 386 400 5.8E-16 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YP_1620 902f3b4e8f99fa4dcce43eddfbfc5ed1 458 SUPERFAMILY SSF56322 4 452 3.4E-147 T 14-10-2018 IPR005801 ADC synthase GO:0009058 YP_1620 902f3b4e8f99fa4dcce43eddfbfc5ed1 458 Pfam PF00425 chorismate binding enzyme 190 444 6.6E-94 T 14-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal YP_1620 902f3b4e8f99fa4dcce43eddfbfc5ed1 458 Pfam PF04715 Anthranilate synthase component I, N terminal region 19 154 1.4E-28 T 14-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YP_1620 902f3b4e8f99fa4dcce43eddfbfc5ed1 458 Gene3D G3DSA:3.60.120.10 3 453 2.4E-173 T 14-10-2018 IPR005801 ADC synthase GO:0009058 YP_0504 7f93c05c819a0f50620a4616fe6432fd 157 Pfam PF04186 FxsA cytoplasmic membrane protein 1 74 6.1E-24 T 14-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 YP_3202 c27ec898f19ac287e2e6d136a147136c 274 Gene3D G3DSA:3.10.310.10 3 270 2.0E-106 T 14-10-2018 YP_3202 c27ec898f19ac287e2e6d136a147136c 274 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 64 78 - T 14-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 YP_3202 c27ec898f19ac287e2e6d136a147136c 274 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 1 273 4.2E-102 T 14-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 YP_3202 c27ec898f19ac287e2e6d136a147136c 274 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 1 274 38.968 T 14-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 YP_3202 c27ec898f19ac287e2e6d136a147136c 274 Pfam PF01678 Diaminopimelate epimerase 3 122 6.0E-34 T 14-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 YP_3202 c27ec898f19ac287e2e6d136a147136c 274 Pfam PF01678 Diaminopimelate epimerase 152 267 2.3E-31 T 14-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 YP_3202 c27ec898f19ac287e2e6d136a147136c 274 Gene3D G3DSA:3.10.310.10 115 261 2.0E-106 T 14-10-2018 YP_3202 c27ec898f19ac287e2e6d136a147136c 274 SUPERFAMILY SSF54506 2 273 1.68E-53 T 14-10-2018 YP_1723 c8763fdf1ba9ed83b21873d3715806eb 194 SMART SM00972 131 191 5.1E-15 T 14-10-2018 IPR007893 Spore coat protein U YP_1723 c8763fdf1ba9ed83b21873d3715806eb 194 Pfam PF05229 Spore Coat Protein U domain 43 191 1.7E-28 T 14-10-2018 IPR007893 Spore coat protein U YP_3544 09eba105bb8de10c9ab9207bebd92de2 435 Pfam PF07690 Major Facilitator Superfamily 29 389 8.9E-53 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_3544 09eba105bb8de10c9ab9207bebd92de2 435 Gene3D G3DSA:1.20.1250.20 232 432 1.2E-27 T 14-10-2018 YP_3544 09eba105bb8de10c9ab9207bebd92de2 435 SUPERFAMILY SSF103473 14 431 9.55E-80 T 14-10-2018 IPR036259 MFS transporter superfamily YP_3544 09eba105bb8de10c9ab9207bebd92de2 435 Gene3D G3DSA:1.20.1250.20 14 209 1.2E-44 T 14-10-2018 YP_1925 9a05eb81c791ec3d855b40018e3ddd7d 180 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 2 169 2.1E-46 T 14-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 YP_1925 9a05eb81c791ec3d855b40018e3ddd7d 180 SUPERFAMILY SSF56529 2 174 3.27E-57 T 14-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YP_1925 9a05eb81c791ec3d855b40018e3ddd7d 180 Gene3D G3DSA:3.90.850.10 1 180 3.3E-62 T 14-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YP_3982 2a0f2bd1e7f38c94e65f09768b3120b2 304 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 9 292 1.2E-149 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_3982 2a0f2bd1e7f38c94e65f09768b3120b2 304 Gene3D G3DSA:3.30.930.10 1 214 5.3E-110 T 14-10-2018 YP_3982 2a0f2bd1e7f38c94e65f09768b3120b2 304 SUPERFAMILY SSF55681 8 292 4.91E-134 T 14-10-2018 YP_3982 2a0f2bd1e7f38c94e65f09768b3120b2 304 Gene3D G3DSA:1.20.58.180 215 297 7.8E-34 T 14-10-2018 YP_3982 2a0f2bd1e7f38c94e65f09768b3120b2 304 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 7 293 62.449 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_3982 2a0f2bd1e7f38c94e65f09768b3120b2 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 139 159 4.1E-71 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_3982 2a0f2bd1e7f38c94e65f09768b3120b2 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 4.1E-71 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_3982 2a0f2bd1e7f38c94e65f09768b3120b2 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 113 137 4.1E-71 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_3982 2a0f2bd1e7f38c94e65f09768b3120b2 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 61 76 4.1E-71 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_3982 2a0f2bd1e7f38c94e65f09768b3120b2 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 82 102 4.1E-71 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_3982 2a0f2bd1e7f38c94e65f09768b3120b2 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 162 177 4.1E-71 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_3982 2a0f2bd1e7f38c94e65f09768b3120b2 304 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 7 301 1.2E-174 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 Gene3D G3DSA:3.50.50.60 444 598 2.2E-42 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 87 98 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 Gene3D G3DSA:1.10.1060.10 208 342 4.7E-32 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 Pfam PF13247 4Fe-4S dicluster domain 55 153 4.3E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 SUPERFAMILY SSF51971 344 599 2.59E-66 T 14-10-2018 YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 Gene3D G3DSA:3.30.70.20 5 161 1.9E-25 T 14-10-2018 YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 PRINTS PR00419 Adrenodoxin reductase family signature 522 535 2.3E-35 T 14-10-2018 YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 PRINTS PR00419 Adrenodoxin reductase family signature 488 502 2.3E-35 T 14-10-2018 YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 PRINTS PR00419 Adrenodoxin reductase family signature 369 382 2.3E-35 T 14-10-2018 YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 PRINTS PR00419 Adrenodoxin reductase family signature 411 421 2.3E-35 T 14-10-2018 YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 PRINTS PR00419 Adrenodoxin reductase family signature 346 368 2.3E-35 T 14-10-2018 YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 207 670 2.8E-238 T 14-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 345 657 1.1E-17 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 Gene3D G3DSA:3.50.50.60 343 409 1.5E-8 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 SUPERFAMILY SSF54862 2 307 9.21E-45 T 14-10-2018 YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 Gene3D G3DSA:3.30.70.20 62 127 1.9E-25 T 14-10-2018 YP_0496 0f75d1e18afc2917dd807a5a56490c09 671 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 222 331 2.8E-35 T 14-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 YP_pMT081 2c6f8bda005b1f634706597792af2b32 392 Gene3D G3DSA:1.10.443.10 176 366 2.9E-12 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YP_pMT081 2c6f8bda005b1f634706597792af2b32 392 Gene3D G3DSA:1.10.150.130 90 166 3.3E-7 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal YP_pMT081 2c6f8bda005b1f634706597792af2b32 392 SUPERFAMILY SSF56349 92 353 1.97E-38 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YP_pMT081 2c6f8bda005b1f634706597792af2b32 392 Pfam PF00589 Phage integrase family 197 342 5.2E-10 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YP_3806 1f5a345dfa6a114b4214c0621599a0e7 241 SUPERFAMILY SSF53955 51 231 2.45E-61 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_3806 1f5a345dfa6a114b4214c0621599a0e7 241 Gene3D G3DSA:1.10.3810.10 53 239 3.1E-53 T 14-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_3806 1f5a345dfa6a114b4214c0621599a0e7 241 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 10 232 39.396 T 14-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_3806 1f5a345dfa6a114b4214c0621599a0e7 241 Pfam PF00912 Transglycosylase 60 227 8.7E-51 T 14-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_3806 1f5a345dfa6a114b4214c0621599a0e7 241 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 19 230 3.1E-83 T 14-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_1354 6043bd77483a12f9f36a27c2042c5fc6 82 Gene3D G3DSA:1.10.1200.10 1 77 1.2E-18 T 14-10-2018 IPR036736 ACP-like superfamily YP_1354 6043bd77483a12f9f36a27c2042c5fc6 82 SUPERFAMILY SSF47336 1 78 2.75E-11 T 14-10-2018 IPR036736 ACP-like superfamily YP_1354 6043bd77483a12f9f36a27c2042c5fc6 82 Pfam PF00550 Phosphopantetheine attachment site 14 74 3.8E-8 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain YP_4031 a4a4c50db4c1f86c245e8cc3e015f003 177 PRINTS PR00125 ATP synthase delta subunit signature 7 26 1.1E-28 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4031 a4a4c50db4c1f86c245e8cc3e015f003 177 PRINTS PR00125 ATP synthase delta subunit signature 85 99 1.1E-28 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4031 a4a4c50db4c1f86c245e8cc3e015f003 177 PRINTS PR00125 ATP synthase delta subunit signature 74 85 1.1E-28 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4031 a4a4c50db4c1f86c245e8cc3e015f003 177 PRINTS PR00125 ATP synthase delta subunit signature 150 168 1.1E-28 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4031 a4a4c50db4c1f86c245e8cc3e015f003 177 PRINTS PR00125 ATP synthase delta subunit signature 135 150 1.1E-28 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4031 a4a4c50db4c1f86c245e8cc3e015f003 177 Gene3D G3DSA:1.10.520.20 2 106 6.4E-38 T 14-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4031 a4a4c50db4c1f86c245e8cc3e015f003 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 174 1.9E-50 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4031 a4a4c50db4c1f86c245e8cc3e015f003 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 175 3.5E-63 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4031 a4a4c50db4c1f86c245e8cc3e015f003 177 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 14-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4031 a4a4c50db4c1f86c245e8cc3e015f003 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 177 18.934 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_4031 a4a4c50db4c1f86c245e8cc3e015f003 177 SUPERFAMILY SSF47928 3 104 1.44E-27 T 14-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YP_1704 5433594faf7a5cefceceb59859c86c6d 601 Pfam PF07730 Histidine kinase 400 463 7.3E-17 T 14-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 YP_1704 5433594faf7a5cefceceb59859c86c6d 601 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 507 594 2.2E-8 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_1704 5433594faf7a5cefceceb59859c86c6d 601 PIRSF PIRSF003167 4 601 2.2E-200 T 14-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 YP_1704 5433594faf7a5cefceceb59859c86c6d 601 Pfam PF00672 HAMP domain 181 229 2.3E-11 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_1704 5433594faf7a5cefceceb59859c86c6d 601 SUPERFAMILY SSF55874 472 593 1.31E-16 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_1704 5433594faf7a5cefceceb59859c86c6d 601 Gene3D G3DSA:3.30.565.10 464 599 2.6E-28 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_1704 5433594faf7a5cefceceb59859c86c6d 601 SUPERFAMILY SSF158472 181 229 4.45E-8 T 14-10-2018 YP_1704 5433594faf7a5cefceceb59859c86c6d 601 Gene3D G3DSA:1.10.287.130 179 292 6.8E-7 T 14-10-2018 YP_1704 5433594faf7a5cefceceb59859c86c6d 601 Gene3D G3DSA:1.20.120.960 47 153 2.5E-38 T 14-10-2018 YP_1704 5433594faf7a5cefceceb59859c86c6d 601 SMART SM00304 181 234 9.0E-13 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_1704 5433594faf7a5cefceceb59859c86c6d 601 SMART SM00387 504 597 8.1E-7 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YP_1704 5433594faf7a5cefceceb59859c86c6d 601 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 40 123 9.8E-7 T 14-10-2018 IPR029095 NarX-like, N-terminal YP_3891 ae2364336073ee8da1bd6e28f420446f 306 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 16 299 2.7E-117 T 14-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 YP_3891 ae2364336073ee8da1bd6e28f420446f 306 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 16 305 5.1E-100 T 14-10-2018 YP_3891 ae2364336073ee8da1bd6e28f420446f 306 PIRSF PIRSF000401 14 306 1.0E-89 T 14-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 YP_3891 ae2364336073ee8da1bd6e28f420446f 306 Gene3D G3DSA:3.40.50.150 114 306 5.0E-56 T 14-10-2018 YP_3891 ae2364336073ee8da1bd6e28f420446f 306 SUPERFAMILY SSF53335 56 300 3.23E-43 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3891 ae2364336073ee8da1bd6e28f420446f 306 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 16 305 32.471 T 14-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 YP_1282 f42297cddecbf17e3e266ee59c7295dc 374 Pfam PF01497 Periplasmic binding protein 100 314 2.1E-23 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain YP_1282 f42297cddecbf17e3e266ee59c7295dc 374 Gene3D G3DSA:3.40.50.1980 24 370 5.2E-108 T 14-10-2018 YP_1282 f42297cddecbf17e3e266ee59c7295dc 374 SUPERFAMILY SSF53807 27 362 1.14E-54 T 14-10-2018 YP_0340 34253700e7c7e67df11152182c02089d 429 Pfam PF02040 Arsenical pump membrane protein 4 423 3.9E-160 T 14-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YP_0340 34253700e7c7e67df11152182c02089d 429 PRINTS PR00758 Arsenical pump membrane protein signature 101 125 6.8E-120 T 14-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YP_0340 34253700e7c7e67df11152182c02089d 429 PRINTS PR00758 Arsenical pump membrane protein signature 217 242 6.8E-120 T 14-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YP_0340 34253700e7c7e67df11152182c02089d 429 PRINTS PR00758 Arsenical pump membrane protein signature 144 168 6.8E-120 T 14-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YP_0340 34253700e7c7e67df11152182c02089d 429 PRINTS PR00758 Arsenical pump membrane protein signature 278 302 6.8E-120 T 14-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YP_0340 34253700e7c7e67df11152182c02089d 429 PRINTS PR00758 Arsenical pump membrane protein signature 364 389 6.8E-120 T 14-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YP_0340 34253700e7c7e67df11152182c02089d 429 PRINTS PR00758 Arsenical pump membrane protein signature 177 200 6.8E-120 T 14-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YP_0340 34253700e7c7e67df11152182c02089d 429 PRINTS PR00758 Arsenical pump membrane protein signature 323 345 6.8E-120 T 14-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YP_0340 34253700e7c7e67df11152182c02089d 429 PRINTS PR00758 Arsenical pump membrane protein signature 397 421 6.8E-120 T 14-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YP_0340 34253700e7c7e67df11152182c02089d 429 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 3 427 2.5E-216 T 14-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YP_1280 dc4572904abafe5b0b1eb40508e46d89 262 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1280 dc4572904abafe5b0b1eb40508e46d89 262 SUPERFAMILY SSF52540 5 229 5.32E-51 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1280 dc4572904abafe5b0b1eb40508e46d89 262 Gene3D G3DSA:3.40.50.300 5 254 3.1E-58 T 14-10-2018 YP_1280 dc4572904abafe5b0b1eb40508e46d89 262 SMART SM00382 30 215 8.1E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1280 dc4572904abafe5b0b1eb40508e46d89 262 Pfam PF00005 ABC transporter 28 165 3.4E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2027 202c4fc0f1517cfe529368cb70281105 108 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 8 108 1.2E-38 T 14-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 YP_2027 202c4fc0f1517cfe529368cb70281105 108 Pfam PF01253 Translation initiation factor SUI1 32 101 1.7E-19 T 14-10-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 YP_2027 202c4fc0f1517cfe529368cb70281105 108 PIRSF PIRSF037511 1 108 9.9E-36 T 14-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 YP_2027 202c4fc0f1517cfe529368cb70281105 108 SUPERFAMILY SSF55159 5 104 6.02E-27 T 14-10-2018 IPR036877 SUI1 domain superfamily GO:0003743|GO:0006413 YP_2027 202c4fc0f1517cfe529368cb70281105 108 Gene3D G3DSA:3.30.780.10 28 108 3.9E-33 T 14-10-2018 YP_0572 69554d2aa512d229762d0879d739589d 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 2.1E-43 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0572 69554d2aa512d229762d0879d739589d 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 1.0E-18 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0572 69554d2aa512d229762d0879d739589d 85 SUPERFAMILY SSF110324 2 79 1.88E-34 T 14-10-2018 YP_0572 69554d2aa512d229762d0879d739589d 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 14-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0572 69554d2aa512d229762d0879d739589d 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 2.7E-39 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0572 69554d2aa512d229762d0879d739589d 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 2.7E-39 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0572 69554d2aa512d229762d0879d739589d 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 2.7E-39 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0572 69554d2aa512d229762d0879d739589d 85 Gene3D G3DSA:2.40.50.100 21 85 1.1E-30 T 14-10-2018 YP_0572 69554d2aa512d229762d0879d739589d 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 29.288 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0572 69554d2aa512d229762d0879d739589d 85 Pfam PF01016 Ribosomal L27 protein 2 82 4.0E-39 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_pMT114 af647b561fc8bebba3e51698d51e4efc 81 SUPERFAMILY SSF143120 7 76 5.23E-10 T 14-10-2018 IPR036165 YefM-like superfamily YP_pMT114 af647b561fc8bebba3e51698d51e4efc 81 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 7 69 1.1E-6 T 14-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM YP_0691 1edda69ac4dca9a42dfd70df6a9d26fb 250 Pfam PF03734 L,D-transpeptidase catalytic domain 47 162 5.1E-9 T 14-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 YP_0691 1edda69ac4dca9a42dfd70df6a9d26fb 250 SUPERFAMILY SSF141523 44 162 5.49E-10 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like YP_1737 fd59c7fb6883fa0cac2989a94dcfe0dc 455 Pfam PF07690 Major Facilitator Superfamily 21 412 1.5E-47 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_1737 fd59c7fb6883fa0cac2989a94dcfe0dc 455 PRINTS PR01036 Tetracycline resistance protein TetB signature 305 329 5.2E-10 T 14-10-2018 YP_1737 fd59c7fb6883fa0cac2989a94dcfe0dc 455 PRINTS PR01036 Tetracycline resistance protein TetB signature 403 422 5.2E-10 T 14-10-2018 YP_1737 fd59c7fb6883fa0cac2989a94dcfe0dc 455 PRINTS PR01036 Tetracycline resistance protein TetB signature 20 44 5.2E-10 T 14-10-2018 YP_1737 fd59c7fb6883fa0cac2989a94dcfe0dc 455 PRINTS PR01036 Tetracycline resistance protein TetB signature 268 293 5.2E-10 T 14-10-2018 YP_1737 fd59c7fb6883fa0cac2989a94dcfe0dc 455 PRINTS PR01036 Tetracycline resistance protein TetB signature 111 131 5.2E-10 T 14-10-2018 YP_1737 fd59c7fb6883fa0cac2989a94dcfe0dc 455 PRINTS PR01036 Tetracycline resistance protein TetB signature 141 165 5.2E-10 T 14-10-2018 YP_1737 fd59c7fb6883fa0cac2989a94dcfe0dc 455 Gene3D G3DSA:1.20.1250.20 262 455 3.9E-21 T 14-10-2018 YP_1737 fd59c7fb6883fa0cac2989a94dcfe0dc 455 SUPERFAMILY SSF103473 8 450 1.31E-62 T 14-10-2018 IPR036259 MFS transporter superfamily YP_1737 fd59c7fb6883fa0cac2989a94dcfe0dc 455 Gene3D G3DSA:1.20.1720.10 17 249 3.1E-45 T 14-10-2018 YP_1553 552af40db2a78f5aec0f0d8e4aa6a802 132 SUPERFAMILY SSF101116 8 130 7.46E-41 T 14-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 YP_1553 552af40db2a78f5aec0f0d8e4aa6a802 132 PIRSF PIRSF039090 1 132 9.7E-42 T 14-10-2018 IPR003713 Flagellar protein FliS GO:0044780 YP_1553 552af40db2a78f5aec0f0d8e4aa6a802 132 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 125 9.3E-37 T 14-10-2018 IPR003713 Flagellar protein FliS GO:0044780 YP_1553 552af40db2a78f5aec0f0d8e4aa6a802 132 Pfam PF02561 Flagellar protein FliS 8 125 4.1E-39 T 14-10-2018 IPR003713 Flagellar protein FliS GO:0044780 YP_1553 552af40db2a78f5aec0f0d8e4aa6a802 132 Gene3D G3DSA:1.20.120.340 2 128 9.3E-41 T 14-10-2018 YP_0368 3c8e570f94e09106b1b108afa9409ffd 318 SUPERFAMILY SSF53822 33 310 4.12E-77 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_0368 3c8e570f94e09106b1b108afa9409ffd 318 Pfam PF13407 Periplasmic binding protein domain 34 289 7.3E-58 T 14-10-2018 IPR025997 Periplasmic binding protein YP_0368 3c8e570f94e09106b1b108afa9409ffd 318 Gene3D G3DSA:3.40.50.2300 41 288 7.9E-91 T 14-10-2018 YP_0368 3c8e570f94e09106b1b108afa9409ffd 318 Gene3D G3DSA:3.40.50.2300 135 269 7.9E-91 T 14-10-2018 YP_1273 cf3314fe03049e377b91a88291525301 223 SUPERFAMILY SSF161098 16 205 6.67E-42 T 14-10-2018 IPR035906 MetI-like superfamily YP_1273 cf3314fe03049e377b91a88291525301 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 49 215 2.1E-20 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1273 cf3314fe03049e377b91a88291525301 223 Gene3D G3DSA:1.10.3720.10 8 221 1.6E-46 T 14-10-2018 IPR035906 MetI-like superfamily YP_2019 9f181062188a172cf596fea056c0d92a 890 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 19 890 0.0 T 14-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 YP_2019 9f181062188a172cf596fea056c0d92a 890 PRINTS PR00415 Aconitase family signature 431 442 1.0E-43 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_2019 9f181062188a172cf596fea056c0d92a 890 PRINTS PR00415 Aconitase family signature 372 386 1.0E-43 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_2019 9f181062188a172cf596fea056c0d92a 890 PRINTS PR00415 Aconitase family signature 493 506 1.0E-43 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_2019 9f181062188a172cf596fea056c0d92a 890 PRINTS PR00415 Aconitase family signature 279 292 1.0E-43 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_2019 9f181062188a172cf596fea056c0d92a 890 PRINTS PR00415 Aconitase family signature 146 159 1.0E-43 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_2019 9f181062188a172cf596fea056c0d92a 890 PRINTS PR00415 Aconitase family signature 170 178 1.0E-43 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_2019 9f181062188a172cf596fea056c0d92a 890 PRINTS PR00415 Aconitase family signature 217 232 1.0E-43 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_2019 9f181062188a172cf596fea056c0d92a 890 PRINTS PR00415 Aconitase family signature 293 306 1.0E-43 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_2019 9f181062188a172cf596fea056c0d92a 890 PRINTS PR00415 Aconitase family signature 203 216 1.0E-43 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_2019 9f181062188a172cf596fea056c0d92a 890 Pfam PF00330 Aconitase family (aconitate hydratase) 69 562 7.5E-184 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YP_2019 9f181062188a172cf596fea056c0d92a 890 Gene3D G3DSA:1.10.1440.20 592 650 1.4E-17 T 14-10-2018 YP_2019 9f181062188a172cf596fea056c0d92a 890 ProSitePatterns PS01244 Aconitase family signature 2. 493 506 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 YP_2019 9f181062188a172cf596fea056c0d92a 890 SUPERFAMILY SSF52016 629 890 5.89E-89 T 14-10-2018 YP_2019 9f181062188a172cf596fea056c0d92a 890 SUPERFAMILY SSF53732 11 626 3.66E-223 T 14-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 YP_2019 9f181062188a172cf596fea056c0d92a 890 Gene3D G3DSA:3.20.19.10 653 890 5.2E-105 T 14-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 YP_2019 9f181062188a172cf596fea056c0d92a 890 ProSitePatterns PS00450 Aconitase family signature 1. 427 443 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 YP_2019 9f181062188a172cf596fea056c0d92a 890 Pfam PF00694 Aconitase C-terminal domain 691 818 8.3E-49 T 14-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 YP_2019 9f181062188a172cf596fea056c0d92a 890 Gene3D G3DSA:3.30.499.20 6 372 5.5E-160 T 14-10-2018 YP_2019 9f181062188a172cf596fea056c0d92a 890 Gene3D G3DSA:3.30.499.10 373 590 4.9E-101 T 14-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 YP_1087 cd0ebf571459666db9e506de4e8ed379 381 PIRSF PIRSF038994 1 381 7.6E-116 T 14-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 YP_1087 cd0ebf571459666db9e506de4e8ed379 381 Gene3D G3DSA:2.30.40.10 7 376 4.4E-136 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YP_1087 cd0ebf571459666db9e506de4e8ed379 381 SUPERFAMILY SSF51556 54 350 2.77E-100 T 14-10-2018 IPR032466 Metal-dependent hydrolase YP_1087 cd0ebf571459666db9e506de4e8ed379 381 Gene3D G3DSA:3.20.20.140 55 344 4.4E-136 T 14-10-2018 YP_1087 cd0ebf571459666db9e506de4e8ed379 381 SUPERFAMILY SSF51338 1 53 2.64E-19 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YP_1087 cd0ebf571459666db9e506de4e8ed379 381 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 1 377 2.4E-163 T 14-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 YP_1087 cd0ebf571459666db9e506de4e8ed379 381 Pfam PF01979 Amidohydrolase family 50 379 1.6E-41 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 YP_1665 361aa33f5a7f20b293dec83b6f1327ea 176 Gene3D G3DSA:2.60.40.1090 22 176 2.9E-26 T 14-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YP_1665 361aa33f5a7f20b293dec83b6f1327ea 176 Pfam PF00419 Fimbrial protein 26 175 5.3E-11 T 14-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YP_1665 361aa33f5a7f20b293dec83b6f1327ea 176 SUPERFAMILY SSF49401 25 175 5.97E-26 T 14-10-2018 IPR008966 Adhesion domain superfamily YP_2039 44c1b2f7be5aa9a34d928dd3a9d6c40e 209 PIRSF PIRSF006091 1 203 1.2E-71 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 YP_2039 44c1b2f7be5aa9a34d928dd3a9d6c40e 209 SMART SM00900 100 192 8.5E-35 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 YP_2039 44c1b2f7be5aa9a34d928dd3a9d6c40e 209 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 2 194 26.87 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 YP_2039 44c1b2f7be5aa9a34d928dd3a9d6c40e 209 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 9 193 1.3E-67 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 YP_2039 44c1b2f7be5aa9a34d928dd3a9d6c40e 209 Pfam PF04205 FMN-binding domain 100 189 1.1E-17 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 YP_0441 54715b88c314b853e749c95511fdf976 187 Pfam PF06228 Haem utilisation ChuX/HutX 40 174 7.8E-34 T 14-10-2018 IPR010413 Heme utilization carrier protein HutX-like YP_0441 54715b88c314b853e749c95511fdf976 187 PIRSF PIRSF030840 1 180 2.0E-93 T 14-10-2018 IPR010413 Heme utilization carrier protein HutX-like YP_0441 54715b88c314b853e749c95511fdf976 187 Gene3D G3DSA:3.40.1570.10 2 183 2.0E-59 T 14-10-2018 YP_0441 54715b88c314b853e749c95511fdf976 187 TIGRFAM TIGR04108 HutX: putative heme utilization carrier protein HutX 24 174 9.7E-65 T 14-10-2018 IPR010413 Heme utilization carrier protein HutX-like YP_0441 54715b88c314b853e749c95511fdf976 187 SUPERFAMILY SSF144064 9 178 3.27E-53 T 14-10-2018 YP_2651 c1b9503dca60b1c0c3e0bb6cf05c4417 759 PRINTS PR01484 Pertactin virulence factor family signature 714 739 2.7E-12 T 14-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YP_2651 c1b9503dca60b1c0c3e0bb6cf05c4417 759 PRINTS PR01484 Pertactin virulence factor family signature 627 644 2.7E-12 T 14-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YP_2651 c1b9503dca60b1c0c3e0bb6cf05c4417 759 PRINTS PR01484 Pertactin virulence factor family signature 646 669 2.7E-12 T 14-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YP_2651 c1b9503dca60b1c0c3e0bb6cf05c4417 759 PRINTS PR01484 Pertactin virulence factor family signature 675 696 2.7E-12 T 14-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YP_2651 c1b9503dca60b1c0c3e0bb6cf05c4417 759 PRINTS PR01484 Pertactin virulence factor family signature 535 559 2.7E-12 T 14-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YP_2651 c1b9503dca60b1c0c3e0bb6cf05c4417 759 PRINTS PR01484 Pertactin virulence factor family signature 739 759 2.7E-12 T 14-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YP_2651 c1b9503dca60b1c0c3e0bb6cf05c4417 759 Pfam PF03212 Pertactin 311 424 3.3E-21 T 14-10-2018 IPR004899 Pertactin, central region YP_2651 c1b9503dca60b1c0c3e0bb6cf05c4417 759 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 327 759 1.6E-96 T 14-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YP_2651 c1b9503dca60b1c0c3e0bb6cf05c4417 759 SUPERFAMILY SSF103515 463 759 3.92E-50 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_2651 c1b9503dca60b1c0c3e0bb6cf05c4417 759 Gene3D G3DSA:2.160.20.20 1 440 5.0E-27 T 14-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YP_2651 c1b9503dca60b1c0c3e0bb6cf05c4417 759 SMART SM00869 494 748 1.3E-44 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_2651 c1b9503dca60b1c0c3e0bb6cf05c4417 759 Pfam PF03797 Autotransporter beta-domain 497 738 1.7E-48 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_2651 c1b9503dca60b1c0c3e0bb6cf05c4417 759 Gene3D G3DSA:2.40.128.130 449 759 1.8E-69 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_2651 c1b9503dca60b1c0c3e0bb6cf05c4417 759 SUPERFAMILY SSF51126 56 445 6.59E-22 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor YP_1692 f79c52c5ed3b829824b9c922005a32a0 104 Gene3D G3DSA:1.10.760.10 12 103 2.9E-12 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 YP_1692 f79c52c5ed3b829824b9c922005a32a0 104 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 19 93 5.5E-9 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_1692 f79c52c5ed3b829824b9c922005a32a0 104 SUPERFAMILY SSF46626 3 99 1.4E-14 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 YP_3466 9e361dca00c5ea66c6b5fec0e8ad25ca 163 Pfam PF05638 Type VI secretion system effector, Hcp 6 146 2.1E-35 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_3466 9e361dca00c5ea66c6b5fec0e8ad25ca 163 Gene3D G3DSA:2.30.110.20 1 163 1.7E-79 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_3466 9e361dca00c5ea66c6b5fec0e8ad25ca 163 SUPERFAMILY SSF141452 2 160 3.92E-43 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_3466 9e361dca00c5ea66c6b5fec0e8ad25ca 163 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 160 3.7E-49 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_1361 9e361dca00c5ea66c6b5fec0e8ad25ca 163 Pfam PF05638 Type VI secretion system effector, Hcp 6 146 2.1E-35 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_1361 9e361dca00c5ea66c6b5fec0e8ad25ca 163 Gene3D G3DSA:2.30.110.20 1 163 1.7E-79 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_1361 9e361dca00c5ea66c6b5fec0e8ad25ca 163 SUPERFAMILY SSF141452 2 160 3.92E-43 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_1361 9e361dca00c5ea66c6b5fec0e8ad25ca 163 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 160 3.7E-49 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_3855 ded49b1facbe96f90a0a85f188d88c58 157 PIRSF PIRSF001013 1 157 1.1E-71 T 14-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 YP_3855 ded49b1facbe96f90a0a85f188d88c58 157 PRINTS PR00117 Barnase signature 115 134 4.6E-31 T 14-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 YP_3855 ded49b1facbe96f90a0a85f188d88c58 157 PRINTS PR00117 Barnase signature 54 71 4.6E-31 T 14-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 YP_3855 ded49b1facbe96f90a0a85f188d88c58 157 PRINTS PR00117 Barnase signature 74 91 4.6E-31 T 14-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 YP_3855 ded49b1facbe96f90a0a85f188d88c58 157 PRINTS PR00117 Barnase signature 137 155 4.6E-31 T 14-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 YP_3855 ded49b1facbe96f90a0a85f188d88c58 157 PRINTS PR00117 Barnase signature 94 112 4.6E-31 T 14-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 YP_3855 ded49b1facbe96f90a0a85f188d88c58 157 Pfam PF00545 ribonuclease 67 154 1.8E-24 T 14-10-2018 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 YP_3855 ded49b1facbe96f90a0a85f188d88c58 157 SUPERFAMILY SSF53933 50 156 2.24E-38 T 14-10-2018 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 YP_3855 ded49b1facbe96f90a0a85f188d88c58 157 Gene3D G3DSA:3.10.450.30 43 157 6.9E-45 T 14-10-2018 YP_0394 a1e436bd9273e21431549c822b2d26dd 115 Gene3D G3DSA:2.30.30.790 2 114 3.6E-16 T 14-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0394 a1e436bd9273e21431549c822b2d26dd 115 Pfam PF01245 Ribosomal protein L19 3 113 1.2E-49 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0394 a1e436bd9273e21431549c822b2d26dd 115 PIRSF PIRSF002191 1 115 1.9E-49 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0394 a1e436bd9273e21431549c822b2d26dd 115 PRINTS PR00061 Ribosomal protein L19 signature 34 63 9.8E-43 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0394 a1e436bd9273e21431549c822b2d26dd 115 PRINTS PR00061 Ribosomal protein L19 signature 4 33 9.8E-43 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0394 a1e436bd9273e21431549c822b2d26dd 115 PRINTS PR00061 Ribosomal protein L19 signature 88 113 9.8E-43 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0394 a1e436bd9273e21431549c822b2d26dd 115 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 14-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0394 a1e436bd9273e21431549c822b2d26dd 115 SUPERFAMILY SSF50104 2 114 3.11E-47 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily YP_0394 a1e436bd9273e21431549c822b2d26dd 115 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 30.023 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0394 a1e436bd9273e21431549c822b2d26dd 115 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 2.8E-52 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0844 491e88ebf1a5931c5602bd2b2116541b 222 Gene3D G3DSA:3.40.50.1110 38 221 1.2E-71 T 14-10-2018 IPR036514 SGNH hydrolase superfamily YP_0844 491e88ebf1a5931c5602bd2b2116541b 222 SUPERFAMILY SSF52266 40 217 1.14E-49 T 14-10-2018 YP_0844 491e88ebf1a5931c5602bd2b2116541b 222 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 44 201 3.4E-24 T 14-10-2018 IPR013830 SGNH hydrolase-type esterase domain YP_0844 491e88ebf1a5931c5602bd2b2116541b 222 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 41 51 - T 14-10-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 YP_3492 300366d018c49afecbec9de6cfc7c807 308 TIGRFAM TIGR03814 Gln_ase: glutaminase A 10 308 6.8E-134 T 14-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 YP_3492 300366d018c49afecbec9de6cfc7c807 308 Hamap MF_00313 Glutaminase [glsA]. 6 308 47.123 T 14-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 YP_3492 300366d018c49afecbec9de6cfc7c807 308 SUPERFAMILY SSF56601 8 308 1.09E-116 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YP_3492 300366d018c49afecbec9de6cfc7c807 308 Gene3D G3DSA:3.40.710.10 4 308 9.3E-112 T 14-10-2018 YP_3492 300366d018c49afecbec9de6cfc7c807 308 Pfam PF04960 Glutaminase 24 308 3.2E-115 T 14-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 YP_2516 3657c881c3d566865634af056ee069ac 218 SUPERFAMILY SSF89069 1 66 7.19E-20 T 14-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 YP_2516 3657c881c3d566865634af056ee069ac 218 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 132 188 2.6E-22 T 14-10-2018 IPR005573 Anti sigma-E protein RseA, C-terminal YP_2516 3657c881c3d566865634af056ee069ac 218 PIRSF PIRSF016938 1 206 2.7E-31 T 14-10-2018 IPR026279 Sigma-E factor negative regulatory protein RseA GO:0016989 YP_2516 3657c881c3d566865634af056ee069ac 218 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 1 87 1.1E-34 T 14-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 YP_2516 3657c881c3d566865634af056ee069ac 218 Gene3D G3DSA:1.10.10.880 1 66 4.1E-27 T 14-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 YP_1615 17422e4b05d8e917695e6be0be64334d 108 Gene3D G3DSA:2.30.130.30 6 108 2.2E-42 T 14-10-2018 YP_1615 17422e4b05d8e917695e6be0be64334d 108 Pfam PF04266 ASCH domain 12 98 4.1E-13 T 14-10-2018 IPR007374 ASCH domain YP_1615 17422e4b05d8e917695e6be0be64334d 108 PIRSF PIRSF029143 6 108 7.8E-49 T 14-10-2018 IPR008314 Uncharacterised conserved protein UCP029143 YP_1615 17422e4b05d8e917695e6be0be64334d 108 SMART SM01022 11 107 3.1E-24 T 14-10-2018 IPR007374 ASCH domain YP_1615 17422e4b05d8e917695e6be0be64334d 108 Hamap MF_00684 UPF0267 protein YqfB [yqfB]. 7 108 31.61 T 14-10-2018 IPR008314 Uncharacterised conserved protein UCP029143 YP_1615 17422e4b05d8e917695e6be0be64334d 108 SUPERFAMILY SSF88697 7 106 5.14E-31 T 14-10-2018 IPR015947 PUA-like superfamily YP_1933 b5d99ed461b9ca8775d8377e7d65136e 148 SUPERFAMILY SSF103370 1 140 1.11E-55 T 14-10-2018 IPR036619 NinB superfamily YP_1933 b5d99ed461b9ca8775d8377e7d65136e 148 Gene3D G3DSA:1.10.3790.10 1 145 3.7E-57 T 14-10-2018 IPR036619 NinB superfamily YP_1933 b5d99ed461b9ca8775d8377e7d65136e 148 Pfam PF05772 NinB protein 3 127 7.3E-54 T 14-10-2018 IPR008711 Recombinase NinB YP_0122 dfcc3e33ee9097e856e70e5f4bf905e3 252 Pfam PF00455 DeoR C terminal sensor domain 76 232 9.9E-54 T 14-10-2018 IPR014036 DeoR C-terminal sensor domain YP_0122 dfcc3e33ee9097e856e70e5f4bf905e3 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 14-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 YP_0122 dfcc3e33ee9097e856e70e5f4bf905e3 252 Gene3D G3DSA:1.10.10.10 1 58 9.3E-8 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0122 dfcc3e33ee9097e856e70e5f4bf905e3 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 2.2E-12 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_0122 dfcc3e33ee9097e856e70e5f4bf905e3 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 2.2E-12 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_0122 dfcc3e33ee9097e856e70e5f4bf905e3 252 SMART SM00420 6 58 3.0E-26 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_0122 dfcc3e33ee9097e856e70e5f4bf905e3 252 SUPERFAMILY SSF46785 3 73 9.34E-16 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0122 dfcc3e33ee9097e856e70e5f4bf905e3 252 SMART SM01134 72 233 8.0E-72 T 14-10-2018 YP_0122 dfcc3e33ee9097e856e70e5f4bf905e3 252 SUPERFAMILY SSF100950 74 234 1.07E-29 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_0122 dfcc3e33ee9097e856e70e5f4bf905e3 252 Gene3D G3DSA:3.30.750.70 70 133 3.9E-10 T 14-10-2018 YP_0122 dfcc3e33ee9097e856e70e5f4bf905e3 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 6.4E-24 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YP_3105 f85820d1f0bec297ab9c76bdfc5fa035 90 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 27 90 1.3E-20 T 14-10-2018 IPR010035 ThiS, thiamine-biosynthesis YP_3105 f85820d1f0bec297ab9c76bdfc5fa035 90 SUPERFAMILY SSF54285 26 90 2.84E-15 T 14-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YP_3105 f85820d1f0bec297ab9c76bdfc5fa035 90 Pfam PF02597 ThiS family 31 90 4.1E-12 T 14-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 YP_3105 f85820d1f0bec297ab9c76bdfc5fa035 90 Gene3D G3DSA:3.10.20.30 26 90 9.0E-18 T 14-10-2018 IPR012675 Beta-grasp domain superfamily YP_3943 1e50d7a463af7f1cc9ea0facfaab91c6 152 Gene3D G3DSA:3.40.1000.10 5 151 1.7E-38 T 14-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YP_3943 1e50d7a463af7f1cc9ea0facfaab91c6 152 SUPERFAMILY SSF55724 6 146 3.98E-46 T 14-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YP_3943 1e50d7a463af7f1cc9ea0facfaab91c6 152 Pfam PF08786 DcrB 13 141 2.4E-39 T 14-10-2018 IPR014894 Protein DcrB YP_3533 9b6eab167574dbcea9942641efcea690 146 Gene3D G3DSA:3.40.50.510 1 144 2.7E-36 T 14-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 YP_3533 9b6eab167574dbcea9942641efcea690 146 SUPERFAMILY SSF53062 1 130 1.31E-35 T 14-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 YP_3533 9b6eab167574dbcea9942641efcea690 146 Pfam PF03610 PTS system fructose IIA component 3 115 7.1E-28 T 14-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 YP_0128 6293ac96e9168f548dbd8f9f9e649b86 191 Gene3D G3DSA:3.30.300.130 101 188 8.3E-21 T 14-10-2018 IPR034904 Fe-S cluster assembly domain superfamily YP_0128 6293ac96e9168f548dbd8f9f9e649b86 191 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 2 191 1.4E-100 T 14-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 YP_0128 6293ac96e9168f548dbd8f9f9e649b86 191 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 98 1.3E-12 T 14-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 YP_0128 6293ac96e9168f548dbd8f9f9e649b86 191 SUPERFAMILY SSF89360 1 97 1.73E-21 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 YP_0128 6293ac96e9168f548dbd8f9f9e649b86 191 SUPERFAMILY SSF117916 95 184 1.26E-23 T 14-10-2018 IPR034904 Fe-S cluster assembly domain superfamily YP_0128 6293ac96e9168f548dbd8f9f9e649b86 191 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 1 191 46.185 T 14-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 YP_0128 6293ac96e9168f548dbd8f9f9e649b86 191 Gene3D G3DSA:2.60.300.12 1 98 1.3E-13 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 YP_0128 6293ac96e9168f548dbd8f9f9e649b86 191 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 119 177 6.0E-28 T 14-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 YP_0128 6293ac96e9168f548dbd8f9f9e649b86 191 Pfam PF01106 NifU-like domain 111 177 7.7E-20 T 14-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 YP_0925 931fc4065e182ec1929e0a8980ba1c14 85 Gene3D G3DSA:3.10.20.30 1 85 7.5E-19 T 14-10-2018 IPR012675 Beta-grasp domain superfamily YP_0925 931fc4065e182ec1929e0a8980ba1c14 85 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 77 1.1E-9 T 14-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 YP_0925 931fc4065e182ec1929e0a8980ba1c14 85 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 14-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 YP_0925 931fc4065e182ec1929e0a8980ba1c14 85 SUPERFAMILY SSF54292 4 85 2.36E-20 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YP_2771 4486224645e3ac9f82c1a3dbc926c4cd 483 Pfam PF01476 LysM domain 377 418 7.3E-13 T 14-10-2018 IPR018392 LysM domain YP_2771 4486224645e3ac9f82c1a3dbc926c4cd 483 Pfam PF01476 LysM domain 430 473 1.8E-9 T 14-10-2018 IPR018392 LysM domain YP_2771 4486224645e3ac9f82c1a3dbc926c4cd 483 Gene3D G3DSA:1.10.530.10 127 281 8.7E-33 T 14-10-2018 YP_2771 4486224645e3ac9f82c1a3dbc926c4cd 483 Pfam PF01464 Transglycosylase SLT domain 137 244 1.2E-28 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 YP_2771 4486224645e3ac9f82c1a3dbc926c4cd 483 SUPERFAMILY SSF53955 129 280 8.44E-42 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_2771 4486224645e3ac9f82c1a3dbc926c4cd 483 Gene3D G3DSA:3.10.350.10 372 426 1.0E-14 T 14-10-2018 IPR036779 LysM domain superfamily YP_2771 4486224645e3ac9f82c1a3dbc926c4cd 483 SUPERFAMILY SSF54106 428 474 1.18E-9 T 14-10-2018 YP_2771 4486224645e3ac9f82c1a3dbc926c4cd 483 SUPERFAMILY SSF54106 376 419 4.05E-10 T 14-10-2018 YP_2771 4486224645e3ac9f82c1a3dbc926c4cd 483 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 151 179 - T 14-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 YP_2771 4486224645e3ac9f82c1a3dbc926c4cd 483 Gene3D G3DSA:3.10.350.10 427 476 7.7E-14 T 14-10-2018 IPR036779 LysM domain superfamily YP_2771 4486224645e3ac9f82c1a3dbc926c4cd 483 SMART SM00257 429 474 3.3E-9 T 14-10-2018 IPR018392 LysM domain YP_2771 4486224645e3ac9f82c1a3dbc926c4cd 483 SMART SM00257 376 420 1.7E-12 T 14-10-2018 IPR018392 LysM domain YP_1779 ded581a68c0131ab95fe0ba87c096331 71 TIGRFAM TIGR03318 YdfZ_fam: putative selenium-binding protein YdfZ 6 70 1.4E-36 T 14-10-2018 IPR017704 Putative selenium-binding protein YdfZ YP_1779 ded581a68c0131ab95fe0ba87c096331 71 Pfam PF14001 YdfZ protein 7 70 1.0E-33 T 14-10-2018 IPR017704 Putative selenium-binding protein YdfZ YP_2432 cca18648ea16ca6297e09b23f95a7e8a 180 Gene3D G3DSA:1.20.1440.20 15 180 4.9E-52 T 14-10-2018 IPR023353 LemA-like domain superfamily YP_2432 cca18648ea16ca6297e09b23f95a7e8a 180 Pfam PF04011 LemA family 7 174 2.1E-56 T 14-10-2018 IPR007156 LemA YP_2432 cca18648ea16ca6297e09b23f95a7e8a 180 SUPERFAMILY SSF140478 25 169 1.31E-46 T 14-10-2018 IPR023353 LemA-like domain superfamily YP_2488 bfc859b3f5df3c135d88ef8b0c756603 561 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 54 194 6.8E-36 T 14-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2488 bfc859b3f5df3c135d88ef8b0c756603 561 SUPERFAMILY SSF53738 319 460 7.06E-32 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2488 bfc859b3f5df3c135d88ef8b0c756603 561 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 154 163 - T 14-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2488 bfc859b3f5df3c135d88ef8b0c756603 561 Gene3D G3DSA:3.30.310.50 457 560 3.1E-35 T 14-10-2018 YP_2488 bfc859b3f5df3c135d88ef8b0c756603 561 SUPERFAMILY SSF53738 40 249 3.3E-51 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2488 bfc859b3f5df3c135d88ef8b0c756603 561 SUPERFAMILY SSF55957 446 557 5.75E-19 T 14-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2488 bfc859b3f5df3c135d88ef8b0c756603 561 SUPERFAMILY SSF53738 223 331 1.11E-8 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2488 bfc859b3f5df3c135d88ef8b0c756603 561 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 334 454 9.6E-30 T 14-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2488 bfc859b3f5df3c135d88ef8b0c756603 561 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 224 331 8.0E-18 T 14-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2488 bfc859b3f5df3c135d88ef8b0c756603 561 Gene3D G3DSA:3.40.120.10 333 456 1.6E-35 T 14-10-2018 YP_2488 bfc859b3f5df3c135d88ef8b0c756603 561 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 502 552 1.5E-7 T 14-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YP_2488 bfc859b3f5df3c135d88ef8b0c756603 561 Gene3D G3DSA:3.40.120.10 26 232 6.3E-77 T 14-10-2018 YP_2488 bfc859b3f5df3c135d88ef8b0c756603 561 Gene3D G3DSA:3.40.120.10 235 332 2.5E-45 T 14-10-2018 YP_2488 bfc859b3f5df3c135d88ef8b0c756603 561 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 16 557 0.0 T 14-10-2018 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6317|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-6981|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7900|MetaCyc: PWY-7902 YP_3000 8c41ddb53148bd0e376baac73132a3f4 190 Pfam PF16964 Putative tight adherence pilin protein F 8 190 4.4E-40 T 14-10-2018 IPR031582 Putative tight adherence pilin protein F YP_3038 73c3dfeb9078a9a05843d4942f87fa94 243 Pfam PF00460 Flagella basal body rod protein 5 35 8.1E-8 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YP_3038 73c3dfeb9078a9a05843d4942f87fa94 243 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 220 8.5E-55 T 14-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 YP_3038 73c3dfeb9078a9a05843d4942f87fa94 243 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 169 239 2.3E-15 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_3038 73c3dfeb9078a9a05843d4942f87fa94 243 SUPERFAMILY SSF117143 77 178 9.55E-10 T 14-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YP_3038 73c3dfeb9078a9a05843d4942f87fa94 243 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 119 4.9E-27 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YP_4015 ff54d9bccfb310544db6e3a9ee781578 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 61 183 6.5E-13 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_4015 ff54d9bccfb310544db6e3a9ee781578 222 Gene3D G3DSA:3.40.50.1000 7 193 2.0E-45 T 14-10-2018 IPR023214 HAD superfamily YP_4015 ff54d9bccfb310544db6e3a9ee781578 222 Gene3D G3DSA:1.10.150.240 19 86 2.0E-45 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YP_4015 ff54d9bccfb310544db6e3a9ee781578 222 SUPERFAMILY SSF56784 4 212 1.08E-46 T 14-10-2018 IPR036412 HAD-like superfamily YP_4015 ff54d9bccfb310544db6e3a9ee781578 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 183 1.7E-25 T 14-10-2018 YP_4015 ff54d9bccfb310544db6e3a9ee781578 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 129 145 1.7E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_4015 ff54d9bccfb310544db6e3a9ee781578 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 1.7E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_4015 ff54d9bccfb310544db6e3a9ee781578 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 97 110 1.7E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_2002 7ed70caeef718f044ae2628700a91cf4 428 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 33 422 49.011 T 14-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 YP_2002 7ed70caeef718f044ae2628700a91cf4 428 Gene3D G3DSA:3.40.50.1100 41 236 4.4E-181 T 14-10-2018 YP_2002 7ed70caeef718f044ae2628700a91cf4 428 PIRSF PIRSF001413 25 428 1.6E-170 T 14-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 YP_2002 7ed70caeef718f044ae2628700a91cf4 428 SUPERFAMILY SSF53686 36 421 2.88E-141 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_2002 7ed70caeef718f044ae2628700a91cf4 428 Gene3D G3DSA:3.40.50.1100 85 415 4.4E-181 T 14-10-2018 YP_2002 7ed70caeef718f044ae2628700a91cf4 428 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 83 408 5.2E-49 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YP_2002 7ed70caeef718f044ae2628700a91cf4 428 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 39 420 1.7E-188 T 14-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 YP_2002 7ed70caeef718f044ae2628700a91cf4 428 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 111 125 - T 14-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 YP_2994 72a32b2082a4eb093c03b93fa4d7c6e4 297 SUPERFAMILY SSF46689 191 242 5.24E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2994 72a32b2082a4eb093c03b93fa4d7c6e4 297 SMART SM00342 208 291 2.5E-27 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_2994 72a32b2082a4eb093c03b93fa4d7c6e4 297 SUPERFAMILY SSF46689 244 290 1.12E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2994 72a32b2082a4eb093c03b93fa4d7c6e4 297 Pfam PF06719 AraC-type transcriptional regulator N-terminus 29 179 7.8E-41 T 14-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal YP_2994 72a32b2082a4eb093c03b93fa4d7c6e4 297 Pfam PF12833 Helix-turn-helix domain 214 289 9.7E-22 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_2994 72a32b2082a4eb093c03b93fa4d7c6e4 297 Gene3D G3DSA:1.10.10.60 187 295 6.9E-29 T 14-10-2018 YP_0338 01df9ca865e9d6335eb3628712c0a408 224 SMART SM01120 43 216 1.1E-66 T 14-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 YP_0338 01df9ca865e9d6335eb3628712c0a408 224 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 22 215 3.2E-46 T 14-10-2018 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 KEGG: 00561+2.7.1.121 YP_0338 01df9ca865e9d6335eb3628712c0a408 224 Gene3D G3DSA:1.25.40.340 15 220 2.3E-53 T 14-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 YP_0338 01df9ca865e9d6335eb3628712c0a408 224 Pfam PF02734 DAK2 domain 43 215 3.6E-51 T 14-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 YP_0338 01df9ca865e9d6335eb3628712c0a408 224 SUPERFAMILY SSF101473 21 217 2.88E-50 T 14-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 YP_0484 2dbcda6cd16f158e9981ed3dc2d6a2a1 420 Gene3D G3DSA:3.20.20.150 1 420 5.6E-188 T 14-10-2018 YP_0484 2dbcda6cd16f158e9981ed3dc2d6a2a1 420 SUPERFAMILY SSF51658 7 420 2.71E-83 T 14-10-2018 IPR036237 Xylose isomerase-like superfamily YP_0484 2dbcda6cd16f158e9981ed3dc2d6a2a1 420 Hamap MF_00541 L-rhamnose isomerase [rhaA]. 1 420 276.311 T 14-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 YP_0484 2dbcda6cd16f158e9981ed3dc2d6a2a1 420 TIGRFAM TIGR01748 rhaA: L-rhamnose isomerase 7 420 9.5E-236 T 14-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 YP_0484 2dbcda6cd16f158e9981ed3dc2d6a2a1 420 ProDom PD042532 ISOMERASE L-RHAMNOSE METAL-BINDING METABOLISM RHAMNOSE MANGANESE ENZYME KINASE 3D-STRUCTURE RHAA/RHAB 11 420 0.0 T 14-10-2018 YP_0484 2dbcda6cd16f158e9981ed3dc2d6a2a1 420 Pfam PF06134 L-rhamnose isomerase (RhaA) 6 420 4.5E-228 T 14-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 YP_1501 15d9e40c3f559d6f9782aabe2deb2daf 337 Gene3D G3DSA:3.30.360.10 126 324 1.2E-72 T 14-10-2018 YP_1501 15d9e40c3f559d6f9782aabe2deb2daf 337 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 125 4.5E-27 T 14-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 YP_1501 15d9e40c3f559d6f9782aabe2deb2daf 337 Gene3D G3DSA:3.40.50.720 6 310 1.2E-72 T 14-10-2018 YP_1501 15d9e40c3f559d6f9782aabe2deb2daf 337 SUPERFAMILY SSF55347 130 303 1.96E-20 T 14-10-2018 YP_1501 15d9e40c3f559d6f9782aabe2deb2daf 337 SUPERFAMILY SSF51735 3 153 8.91E-45 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0054 ef19789d99961099f794035dd616540e 159 Gene3D G3DSA:3.40.50.620 1 159 7.0E-56 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0054 ef19789d99961099f794035dd616540e 159 Pfam PF01467 Cytidylyltransferase-like 6 134 5.5E-23 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 YP_0054 ef19789d99961099f794035dd616540e 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 6.8E-47 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 YP_0054 ef19789d99961099f794035dd616540e 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 6.8E-47 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 YP_0054 ef19789d99961099f794035dd616540e 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 6.8E-47 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 YP_0054 ef19789d99961099f794035dd616540e 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 6.8E-47 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 YP_0054 ef19789d99961099f794035dd616540e 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 6.8E-47 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 YP_0054 ef19789d99961099f794035dd616540e 159 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 5 157 4.7E-58 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 YP_0054 ef19789d99961099f794035dd616540e 159 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 60 1.2E-15 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 YP_0054 ef19789d99961099f794035dd616540e 159 SUPERFAMILY SSF52374 4 155 1.02E-43 T 14-10-2018 YP_0054 ef19789d99961099f794035dd616540e 159 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 12 77 0.01 T 14-10-2018 YP_0054 ef19789d99961099f794035dd616540e 159 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 159 35.471 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 YP_1057 a33db35e195dfac53799fff076097908 410 Gene3D G3DSA:1.10.443.10 224 397 8.5E-17 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YP_1057 a33db35e195dfac53799fff076097908 410 Pfam PF13356 Arm DNA-binding domain 19 102 3.9E-16 T 14-10-2018 IPR025166 Integrase, DNA-binding domain YP_1057 a33db35e195dfac53799fff076097908 410 Pfam PF00589 Phage integrase family 225 388 4.8E-28 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YP_1057 a33db35e195dfac53799fff076097908 410 SUPERFAMILY SSF56349 120 397 2.38E-56 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YP_1057 a33db35e195dfac53799fff076097908 410 Gene3D G3DSA:3.30.160.390 17 105 3.6E-25 T 14-10-2018 IPR038488 Integrase, DNA-binding domain superfamily YP_1057 a33db35e195dfac53799fff076097908 410 Gene3D G3DSA:1.10.150.130 113 223 6.7E-29 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal YP_0330 70b7fcdb874daf9fdc402f6b3f471648 208 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 1 207 2.1E-89 T 14-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 YP_0330 70b7fcdb874daf9fdc402f6b3f471648 208 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 1 208 38.889 T 14-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 YP_0330 70b7fcdb874daf9fdc402f6b3f471648 208 Gene3D G3DSA:3.40.50.150 1 207 8.5E-79 T 14-10-2018 YP_0330 70b7fcdb874daf9fdc402f6b3f471648 208 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 6 206 3.7E-76 T 14-10-2018 YP_0330 70b7fcdb874daf9fdc402f6b3f471648 208 SUPERFAMILY SSF53335 4 204 6.75E-48 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0330 70b7fcdb874daf9fdc402f6b3f471648 208 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 130 145 - T 14-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 YP_2430 71427ac5f2a1138ac477aac210d6ae51 218 Pfam PF00005 ABC transporter 18 157 2.1E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2430 71427ac5f2a1138ac477aac210d6ae51 218 Gene3D G3DSA:3.40.50.300 1 207 8.9E-43 T 14-10-2018 YP_2430 71427ac5f2a1138ac477aac210d6ae51 218 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 200 3.7E-80 T 14-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 YP_2430 71427ac5f2a1138ac477aac210d6ae51 218 SUPERFAMILY SSF52540 2 188 2.05E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2430 71427ac5f2a1138ac477aac210d6ae51 218 SMART SM00382 26 207 7.3E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2430 71427ac5f2a1138ac477aac210d6ae51 218 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0500 b5f245c3a83c4b86c7a6bccf48cdbe34 119 SUPERFAMILY SSF54913 15 117 6.67E-36 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta YP_0500 b5f245c3a83c4b86c7a6bccf48cdbe34 119 Pfam PF03091 CutA1 divalent ion tolerance protein 19 116 4.5E-34 T 14-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 YP_0500 b5f245c3a83c4b86c7a6bccf48cdbe34 119 Hamap MF_01160 Divalent-cation tolerance protein CutA [cutA]. 13 119 36.414 T 14-10-2018 IPR023700 Divalent cation tolerance protein CutA, Enterobacteria GO:0005507|GO:0005737 YP_0500 b5f245c3a83c4b86c7a6bccf48cdbe34 119 Gene3D G3DSA:3.30.70.120 4 118 1.6E-40 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YP_3404 7e22d3ed379a1dd29c2a9ea4162b7071 211 Gene3D G3DSA:2.60.40.2610 41 132 1.2E-13 T 14-10-2018 YP_3404 7e22d3ed379a1dd29c2a9ea4162b7071 211 Pfam PF13953 PapC C-terminal domain 139 193 5.3E-15 T 14-10-2018 IPR025949 PapC-like, C-terminal domain YP_3404 7e22d3ed379a1dd29c2a9ea4162b7071 211 Pfam PF00577 Outer membrane usher protein 4 126 9.1E-31 T 14-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YP_3404 7e22d3ed379a1dd29c2a9ea4162b7071 211 Gene3D G3DSA:2.60.40.2070 136 211 5.9E-26 T 14-10-2018 YP_0777 0c91d7bdf91020d7d178a60d53c866bf 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.3E-32 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_0777 0c91d7bdf91020d7d178a60d53c866bf 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 14-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 YP_0777 0c91d7bdf91020d7d178a60d53c866bf 90 Gene3D G3DSA:4.10.520.10 1 90 3.3E-36 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YP_0777 0c91d7bdf91020d7d178a60d53c866bf 90 SUPERFAMILY SSF47729 1 90 9.13E-32 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YP_0777 0c91d7bdf91020d7d178a60d53c866bf 90 SMART SM00411 1 90 2.5E-43 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_0777 0c91d7bdf91020d7d178a60d53c866bf 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.2E-19 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_0777 0c91d7bdf91020d7d178a60d53c866bf 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.2E-19 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_0777 0c91d7bdf91020d7d178a60d53c866bf 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.2E-19 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_3264 f539d0b11b4a478ab65d7473fc29fbca 276 SUPERFAMILY SSF52799 12 275 3.53E-51 T 14-10-2018 IPR029021 Protein-tyrosine phosphatase-like YP_3264 f539d0b11b4a478ab65d7473fc29fbca 276 Pfam PF13350 Tyrosine phosphatase family 12 276 2.8E-57 T 14-10-2018 IPR026893 Tyrosine/serine-protein phosphatase IphP-type YP_3264 f539d0b11b4a478ab65d7473fc29fbca 276 Gene3D G3DSA:3.90.190.10 13 275 2.1E-52 T 14-10-2018 IPR029021 Protein-tyrosine phosphatase-like YP_2877 4ebb10d7718c05d751cb0cce9ab05faf 189 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 33 54 1.1E-4 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site YP_2877 4ebb10d7718c05d751cb0cce9ab05faf 189 SUPERFAMILY SSF54523 37 178 1.26E-12 T 14-10-2018 YP_2877 4ebb10d7718c05d751cb0cce9ab05faf 189 Pfam PF07963 Prokaryotic N-terminal methylation motif 32 53 9.0E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site YP_0893 8a07dea23a2542567c39b7448c57f846 198 Pfam PF06890 Bacteriophage Mu Gp45 protein 21 176 8.3E-45 T 14-10-2018 IPR014462 Phage-associated protein Gp45 YP_0893 8a07dea23a2542567c39b7448c57f846 198 PIRSF PIRSF012337 1 196 1.2E-62 T 14-10-2018 IPR014462 Phage-associated protein Gp45 YP_1487 ca0bdc3cdc6524fd886a58e13bb3448f 257 SUPERFAMILY SSF64438 20 193 1.48E-47 T 14-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic YP_1487 ca0bdc3cdc6524fd886a58e13bb3448f 257 Gene3D G3DSA:3.60.140.10 20 200 1.0E-48 T 14-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily YP_1487 ca0bdc3cdc6524fd886a58e13bb3448f 257 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 39 193 1.1E-42 T 14-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase YP_1487 ca0bdc3cdc6524fd886a58e13bb3448f 257 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 35 192 1.4E-45 T 14-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase YP_3078 72c3c2f195207a6480aa94c150ab1ee1 303 Gene3D G3DSA:1.10.3720.10 8 290 3.1E-72 T 14-10-2018 IPR035906 MetI-like superfamily YP_3078 72c3c2f195207a6480aa94c150ab1ee1 303 SUPERFAMILY SSF161098 15 303 2.22E-68 T 14-10-2018 IPR035906 MetI-like superfamily YP_3078 72c3c2f195207a6480aa94c150ab1ee1 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 293 6.3E-16 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_0631 5663bb336173ffa5ed230cc044a35e05 712 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 115 705 1.5E-203 T 14-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 YP_0631 5663bb336173ffa5ed230cc044a35e05 712 Pfam PF03477 ATP cone domain 4 89 2.5E-19 T 14-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 YP_0631 5663bb336173ffa5ed230cc044a35e05 712 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 116 705 2.5E-180 T 14-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 YP_0631 5663bb336173ffa5ed230cc044a35e05 712 SUPERFAMILY SSF51998 121 687 5.49E-192 T 14-10-2018 YP_0631 5663bb336173ffa5ed230cc044a35e05 712 Gene3D G3DSA:3.20.70.20 121 687 9.9E-231 T 14-10-2018 YP_0631 5663bb336173ffa5ed230cc044a35e05 712 ProSitePatterns PS00850 Glycine radical domain signature. 676 684 - T 14-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YP_1129 8e49d09d03a73dc4586640cc28a5073e 352 Pfam PF01261 Xylose isomerase-like TIM barrel 88 284 1.1E-22 T 14-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain YP_1129 8e49d09d03a73dc4586640cc28a5073e 352 TIGRFAM TIGR04379 myo_inos_iolE: myo-inosose-2 dehydratase 59 345 9.6E-126 T 14-10-2018 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 YP_1129 8e49d09d03a73dc4586640cc28a5073e 352 Gene3D G3DSA:3.20.20.150 51 345 1.8E-71 T 14-10-2018 YP_1129 8e49d09d03a73dc4586640cc28a5073e 352 SUPERFAMILY SSF51658 59 345 2.35E-53 T 14-10-2018 IPR036237 Xylose isomerase-like superfamily YP_3531 35aba4e7588578febe16caa8a0f2949b 262 Pfam PF03609 PTS system sorbose-specific iic component 3 233 5.8E-69 T 14-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 YP_1012 a1ec53445df4d0f1d8777578dc574abc 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 240 5.9E-24 T 14-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 YP_1012 a1ec53445df4d0f1d8777578dc574abc 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 267 6.5E-64 T 14-10-2018 YP_1012 a1ec53445df4d0f1d8777578dc574abc 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 267 7.6E-65 T 14-10-2018 IPR000150 Cof family GO:0016787 YP_1012 a1ec53445df4d0f1d8777578dc574abc 273 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 7 21 1.7E-5 T 14-10-2018 YP_1012 a1ec53445df4d0f1d8777578dc574abc 273 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 221 240 1.7E-5 T 14-10-2018 YP_1012 a1ec53445df4d0f1d8777578dc574abc 273 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 244 256 1.7E-5 T 14-10-2018 YP_1012 a1ec53445df4d0f1d8777578dc574abc 273 ProSitePatterns PS01229 Hypothetical cof family signature 2. 221 243 - T 14-10-2018 YP_1012 a1ec53445df4d0f1d8777578dc574abc 273 Gene3D G3DSA:3.30.1240.10 84 196 1.6E-61 T 14-10-2018 YP_1012 a1ec53445df4d0f1d8777578dc574abc 273 SUPERFAMILY SSF56784 1 271 6.58E-68 T 14-10-2018 IPR036412 HAD-like superfamily YP_1012 a1ec53445df4d0f1d8777578dc574abc 273 Gene3D G3DSA:3.40.50.1000 4 267 1.6E-61 T 14-10-2018 IPR023214 HAD superfamily YP_1963 0d1f4efabfc296d45e4602e98ee885f8 183 Pfam PF00881 Nitroreductase family 8 161 1.7E-21 T 14-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 YP_1963 0d1f4efabfc296d45e4602e98ee885f8 183 SUPERFAMILY SSF55469 1 177 2.62E-38 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 YP_1963 0d1f4efabfc296d45e4602e98ee885f8 183 PIRSF PIRSF000232 1 182 2.4E-62 T 14-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like YP_1963 0d1f4efabfc296d45e4602e98ee885f8 183 Gene3D G3DSA:3.40.109.10 1 183 5.8E-42 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 YP_2204 24a1e4555104bbe00e17cfb7f54609d2 114 Pfam PF00892 EamA-like transporter family 33 111 7.7E-11 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_2204 24a1e4555104bbe00e17cfb7f54609d2 114 Hamap MF_01869 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE [arnE]. 2 114 31.817 T 14-10-2018 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE YP_2204 24a1e4555104bbe00e17cfb7f54609d2 114 Gene3D G3DSA:1.10.3730.20 1 113 5.6E-7 T 14-10-2018 YP_2204 24a1e4555104bbe00e17cfb7f54609d2 114 SUPERFAMILY SSF103481 35 113 5.36E-14 T 14-10-2018 YP_2542 df1bbb5b2a950ec6a3f4047d5e96f505 355 ProDom PD117379 LIPOPROTEIN YFHG HELIX ALPHA REGULATOR MEMBRANE TRANSCRIPTIONAL FAMILIIY EBP TWO-COMPONENT 25 243 1.0E-119 T 14-10-2018 YP_2542 df1bbb5b2a950ec6a3f4047d5e96f505 355 Pfam PF13942 YfhG lipoprotein 68 241 1.9E-78 T 14-10-2018 IPR025262 Quorum-sensing regulator protein G YP_1886 645f67e6a132886836b98f769ca3c4ce 511 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 467 20.045 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YP_1886 645f67e6a132886836b98f769ca3c4ce 511 PIRSF PIRSF002869 1 510 5.5E-175 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YP_1886 645f67e6a132886836b98f769ca3c4ce 511 PRINTS PR01806 Virulence factor MviN signature 33 52 2.2E-86 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YP_1886 645f67e6a132886836b98f769ca3c4ce 511 PRINTS PR01806 Virulence factor MviN signature 357 376 2.2E-86 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YP_1886 645f67e6a132886836b98f769ca3c4ce 511 PRINTS PR01806 Virulence factor MviN signature 52 68 2.2E-86 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YP_1886 645f67e6a132886836b98f769ca3c4ce 511 PRINTS PR01806 Virulence factor MviN signature 133 157 2.2E-86 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YP_1886 645f67e6a132886836b98f769ca3c4ce 511 PRINTS PR01806 Virulence factor MviN signature 157 178 2.2E-86 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YP_1886 645f67e6a132886836b98f769ca3c4ce 511 PRINTS PR01806 Virulence factor MviN signature 259 285 2.2E-86 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YP_1886 645f67e6a132886836b98f769ca3c4ce 511 PRINTS PR01806 Virulence factor MviN signature 409 426 2.2E-86 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YP_1886 645f67e6a132886836b98f769ca3c4ce 511 Pfam PF03023 MviN-like protein 28 477 1.0E-149 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YP_1886 645f67e6a132886836b98f769ca3c4ce 511 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 507 1.2E-163 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YP_3183 9f45478ae04ba4804120a676d60d7877 357 SUPERFAMILY SSF51735 4 341 3.48E-93 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3183 9f45478ae04ba4804120a676d60d7877 357 Gene3D G3DSA:3.40.50.720 5 328 1.9E-137 T 14-10-2018 YP_3183 9f45478ae04ba4804120a676d60d7877 357 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 5 343 5.8E-159 T 14-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 YP_3183 9f45478ae04ba4804120a676d60d7877 357 Pfam PF16363 GDP-mannose 4,6 dehydratase 7 329 5.9E-98 T 14-10-2018 IPR016040 NAD(P)-binding domain YP_3183 9f45478ae04ba4804120a676d60d7877 357 Gene3D G3DSA:3.90.25.10 204 337 1.9E-137 T 14-10-2018 YP_2139 f5f42e15e3bf86b2a221bedbae1aaf73 221 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 218 8.4E-96 T 14-10-2018 IPR014319 Phage shock protein, PspA YP_2139 f5f42e15e3bf86b2a221bedbae1aaf73 221 Pfam PF04012 PspA/IM30 family 2 216 2.6E-46 T 14-10-2018 IPR007157 PspA/IM30 YP_1337 b9494915001652885f1833c91a13679c 94 Pfam PF00708 Acylphosphatase 10 92 7.9E-26 T 14-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 YP_1337 b9494915001652885f1833c91a13679c 94 ProSitePatterns PS00151 Acylphosphatase signature 2. 36 52 - T 14-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 YP_1337 b9494915001652885f1833c91a13679c 94 SUPERFAMILY SSF54975 2 94 2.4E-30 T 14-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 YP_1337 b9494915001652885f1833c91a13679c 94 PRINTS PR00112 Acylphosphatase signature 63 83 7.8E-6 T 14-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 YP_1337 b9494915001652885f1833c91a13679c 94 PRINTS PR00112 Acylphosphatase signature 28 53 7.8E-6 T 14-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 YP_1337 b9494915001652885f1833c91a13679c 94 PRINTS PR00112 Acylphosphatase signature 7 22 7.8E-6 T 14-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 YP_1337 b9494915001652885f1833c91a13679c 94 Hamap MF_01450 Acylphosphatase [yccX]. 4 93 30.225 T 14-10-2018 IPR028627 Acylphosphatase, bacteria GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 YP_1337 b9494915001652885f1833c91a13679c 94 ProSitePatterns PS00150 Acylphosphatase signature 1. 12 22 - T 14-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 YP_1337 b9494915001652885f1833c91a13679c 94 Gene3D G3DSA:3.30.70.100 3 93 9.6E-31 T 14-10-2018 YP_3845 c76046c8cb3eb569460dd4f9502d9072 120 Pfam PF16743 Periplasmic lysozyme inhibitor of I-type lysozyme 1 109 1.3E-37 T 14-10-2018 IPR031948 Periplasmic lysozyme inhibitor, I-type YP_3845 c76046c8cb3eb569460dd4f9502d9072 120 SUPERFAMILY SSF69318 12 71 5.89E-7 T 14-10-2018 YP_3845 c76046c8cb3eb569460dd4f9502d9072 120 Gene3D G3DSA:2.40.128.460 1 112 1.2E-29 T 14-10-2018 IPR038643 PliI superfamily YP_3942 a8ed1d17f95d94f9ac377ca87bad6a13 963 Pfam PF05488 PAAR motif 92 158 9.4E-13 T 14-10-2018 IPR008727 PAAR motif YP_3942 a8ed1d17f95d94f9ac377ca87bad6a13 963 Pfam PF05593 RHS Repeat 649 680 6.9E-7 T 14-10-2018 IPR031325 RHS repeat YP_3942 a8ed1d17f95d94f9ac377ca87bad6a13 963 Pfam PF05593 RHS Repeat 671 704 3.9E-6 T 14-10-2018 IPR031325 RHS repeat YP_3942 a8ed1d17f95d94f9ac377ca87bad6a13 963 Pfam PF05593 RHS Repeat 874 910 2.9E-5 T 14-10-2018 IPR031325 RHS repeat YP_3942 a8ed1d17f95d94f9ac377ca87bad6a13 963 Gene3D G3DSA:3.90.930.1 631 778 1.4E-11 T 14-10-2018 YP_3942 a8ed1d17f95d94f9ac377ca87bad6a13 963 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 689 729 1.7E-4 T 14-10-2018 IPR006530 YD repeat YP_3942 a8ed1d17f95d94f9ac377ca87bad6a13 963 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 731 770 3.4E-6 T 14-10-2018 IPR006530 YD repeat YP_3942 a8ed1d17f95d94f9ac377ca87bad6a13 963 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 423 449 0.001 T 14-10-2018 IPR006530 YD repeat YP_3942 a8ed1d17f95d94f9ac377ca87bad6a13 963 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 874 913 1.9E-4 T 14-10-2018 IPR006530 YD repeat YP_3942 a8ed1d17f95d94f9ac377ca87bad6a13 963 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 651 687 1.0E-5 T 14-10-2018 IPR006530 YD repeat YP_3942 a8ed1d17f95d94f9ac377ca87bad6a13 963 Gene3D G3DSA:2.60.200.60 81 168 8.4E-14 T 14-10-2018 YP_1358 d604b59d99c9991d1f418d8cde10f69f 450 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 448 4.7E-140 T 14-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YP_1358 d604b59d99c9991d1f418d8cde10f69f 450 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 18 447 5.5E-138 T 14-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YP_1304 faaa903309ca2c6f975cc33c2a6c799d 271 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 163 191 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YP_1304 faaa903309ca2c6f975cc33c2a6c799d 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 176 195 5.8E-11 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1304 faaa903309ca2c6f975cc33c2a6c799d 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 101 112 5.8E-11 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1304 faaa903309ca2c6f975cc33c2a6c799d 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 162 5.8E-11 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1304 faaa903309ca2c6f975cc33c2a6c799d 271 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 36 269 4.5E-65 T 14-10-2018 YP_1304 faaa903309ca2c6f975cc33c2a6c799d 271 Gene3D G3DSA:3.40.50.720 10 270 7.9E-84 T 14-10-2018 YP_1304 faaa903309ca2c6f975cc33c2a6c799d 271 SUPERFAMILY SSF51735 26 269 7.22E-82 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1304 faaa903309ca2c6f975cc33c2a6c799d 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 31 48 4.9E-45 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1304 faaa903309ca2c6f975cc33c2a6c799d 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 164 4.9E-45 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1304 faaa903309ca2c6f975cc33c2a6c799d 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 195 4.9E-45 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1304 faaa903309ca2c6f975cc33c2a6c799d 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 232 252 4.9E-45 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1304 faaa903309ca2c6f975cc33c2a6c799d 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 197 214 4.9E-45 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1304 faaa903309ca2c6f975cc33c2a6c799d 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 101 112 4.9E-45 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2704 9debccb20f1d1c51c19e4e6aa2b05559 519 Gene3D G3DSA:1.10.3210.10 311 519 1.6E-87 T 14-10-2018 YP_2704 9debccb20f1d1c51c19e4e6aa2b05559 519 SUPERFAMILY SSF53067 138 311 1.13E-47 T 14-10-2018 YP_2704 9debccb20f1d1c51c19e4e6aa2b05559 519 Gene3D G3DSA:3.30.420.150 118 296 2.6E-97 T 14-10-2018 YP_2704 9debccb20f1d1c51c19e4e6aa2b05559 519 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 13 307 3.2E-101 T 14-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 YP_2704 9debccb20f1d1c51c19e4e6aa2b05559 519 SUPERFAMILY SSF109604 314 507 8.63E-55 T 14-10-2018 YP_2704 9debccb20f1d1c51c19e4e6aa2b05559 519 Gene3D G3DSA:3.30.420.40 15 304 2.6E-97 T 14-10-2018 YP_2704 9debccb20f1d1c51c19e4e6aa2b05559 519 SUPERFAMILY SSF53067 14 134 4.98E-37 T 14-10-2018 YP_2704 9debccb20f1d1c51c19e4e6aa2b05559 519 Pfam PF02541 Ppx/GppA phosphatase family 27 309 1.6E-98 T 14-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 YP_2704 9debccb20f1d1c51c19e4e6aa2b05559 519 PIRSF PIRSF001267 4 507 2.0E-203 T 14-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 YP_1566 a91bb39deef83981ee7d2c5501a8bf9c 148 Pfam PF02050 Flagellar FliJ protein 19 141 1.8E-36 T 14-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 YP_1566 a91bb39deef83981ee7d2c5501a8bf9c 148 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 5 143 3.7E-34 T 14-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 YP_1566 a91bb39deef83981ee7d2c5501a8bf9c 148 PIRSF PIRSF019404 1 147 1.6E-51 T 14-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 YP_1566 a91bb39deef83981ee7d2c5501a8bf9c 148 PRINTS PR01004 Flagellar FliJ protein signature 126 146 6.4E-41 T 14-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 YP_1566 a91bb39deef83981ee7d2c5501a8bf9c 148 PRINTS PR01004 Flagellar FliJ protein signature 86 107 6.4E-41 T 14-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 YP_1566 a91bb39deef83981ee7d2c5501a8bf9c 148 PRINTS PR01004 Flagellar FliJ protein signature 44 61 6.4E-41 T 14-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 YP_1566 a91bb39deef83981ee7d2c5501a8bf9c 148 PRINTS PR01004 Flagellar FliJ protein signature 27 43 6.4E-41 T 14-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 YP_1566 a91bb39deef83981ee7d2c5501a8bf9c 148 PRINTS PR01004 Flagellar FliJ protein signature 108 126 6.4E-41 T 14-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 YP_1566 a91bb39deef83981ee7d2c5501a8bf9c 148 PRINTS PR01004 Flagellar FliJ protein signature 63 84 6.4E-41 T 14-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 YP_1566 a91bb39deef83981ee7d2c5501a8bf9c 148 PRINTS PR01004 Flagellar FliJ protein signature 4 26 6.4E-41 T 14-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 YP_pCD75 68ea80d635a448148bfa186417e8b351 325 SUPERFAMILY SSF110849 89 164 6.28E-13 T 14-10-2018 IPR036086 ParB/Sulfiredoxin superfamily YP_pCD75 68ea80d635a448148bfa186417e8b351 325 Pfam PF02195 ParB-like nuclease domain 87 161 4.6E-12 T 14-10-2018 IPR003115 ParB/Sulfiredoxin YP_pCD75 68ea80d635a448148bfa186417e8b351 325 SMART SM00470 75 162 1.4E-10 T 14-10-2018 IPR003115 ParB/Sulfiredoxin YP_pCD75 68ea80d635a448148bfa186417e8b351 325 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 83 250 8.2E-37 T 14-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 YP_pCD75 68ea80d635a448148bfa186417e8b351 325 Gene3D G3DSA:1.10.10.2830 165 275 5.6E-31 T 14-10-2018 YP_pCD75 68ea80d635a448148bfa186417e8b351 325 SUPERFAMILY SSF109709 155 260 4.58E-5 T 14-10-2018 YP_0730 128bac69272492c5ee7afdebb0f0c1de 439 Pfam PF05525 Branched-chain amino acid transport protein 7 426 2.8E-152 T 14-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 YP_0730 128bac69272492c5ee7afdebb0f0c1de 439 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 415 1.2E-155 T 14-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 YP_2174 0eb4c69663ccc909a2a47ab988a6459b 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 1.1E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2174 0eb4c69663ccc909a2a47ab988a6459b 310 Gene3D G3DSA:3.40.190.10 108 286 1.9E-13 T 14-10-2018 YP_2174 0eb4c69663ccc909a2a47ab988a6459b 310 Gene3D G3DSA:3.40.190.10 168 264 1.9E-13 T 14-10-2018 YP_2174 0eb4c69663ccc909a2a47ab988a6459b 310 SUPERFAMILY SSF53850 89 292 2.48E-31 T 14-10-2018 YP_2174 0eb4c69663ccc909a2a47ab988a6459b 310 Pfam PF03466 LysR substrate binding domain 88 291 1.4E-27 T 14-10-2018 IPR005119 LysR, substrate-binding YP_2174 0eb4c69663ccc909a2a47ab988a6459b 310 Gene3D G3DSA:1.10.10.10 4 89 8.5E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2174 0eb4c69663ccc909a2a47ab988a6459b 310 SUPERFAMILY SSF46785 7 88 2.6E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0594 cd9ae0fa8be8e53c473bfe648b2f363e 294 SMART SM00028 96 129 2.0E-4 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YP_0594 cd9ae0fa8be8e53c473bfe648b2f363e 294 SMART SM00028 62 95 0.0033 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YP_0594 cd9ae0fa8be8e53c473bfe648b2f363e 294 Pfam PF13181 Tetratricopeptide repeat 62 94 0.033 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YP_0594 cd9ae0fa8be8e53c473bfe648b2f363e 294 Pfam PF07719 Tetratricopeptide repeat 96 129 5.3E-5 T 14-10-2018 IPR013105 Tetratricopeptide repeat 2 YP_0594 cd9ae0fa8be8e53c473bfe648b2f363e 294 Gene3D G3DSA:1.25.40.10 20 294 2.9E-117 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_0594 cd9ae0fa8be8e53c473bfe648b2f363e 294 SUPERFAMILY SSF48452 27 283 9.36E-75 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_0594 cd9ae0fa8be8e53c473bfe648b2f363e 294 PIRSF PIRSF004654 1 292 1.6E-116 T 14-10-2018 IPR023605 Lipoprotein NlpI YP_0189 c048cf293135021ed37c6271bb938952 602 Gene3D G3DSA:3.40.50.720 400 561 8.8E-36 T 14-10-2018 YP_0189 c048cf293135021ed37c6271bb938952 602 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 283 1.6E-88 T 14-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 YP_0189 c048cf293135021ed37c6271bb938952 602 Pfam PF02254 TrkA-N domain 403 513 1.9E-24 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 YP_0189 c048cf293135021ed37c6271bb938952 602 Gene3D G3DSA:1.20.1530.20 3 386 8.4E-81 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily YP_0189 c048cf293135021ed37c6271bb938952 602 Pfam PF00999 Sodium/hydrogen exchanger family 10 373 1.7E-67 T 14-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 YP_0189 c048cf293135021ed37c6271bb938952 602 SUPERFAMILY SSF51735 402 529 3.36E-30 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0189 c048cf293135021ed37c6271bb938952 602 Hamap MF_01412 Glutathione-regulated potassium-efflux system protein KefB [kefB]. 2 599 50.763 T 14-10-2018 IPR020884 Glutathione-regulated potassium-efflux system protein KefB GO:0005886|GO:0006813|GO:0015503 YP_3436 23461c3b39c3b8820db3acd1c6e9ac5c 1256 Gene3D G3DSA:2.40.128.130 931 1256 2.3E-63 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_3436 23461c3b39c3b8820db3acd1c6e9ac5c 1256 Pfam PF03797 Autotransporter beta-domain 980 1232 1.9E-34 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_3436 23461c3b39c3b8820db3acd1c6e9ac5c 1256 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 808 1256 3.4E-79 T 14-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YP_3436 23461c3b39c3b8820db3acd1c6e9ac5c 1256 SUPERFAMILY SSF103515 939 1256 2.62E-39 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_3436 23461c3b39c3b8820db3acd1c6e9ac5c 1256 Gene3D G3DSA:2.160.20.20 734 924 1.1E-33 T 14-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YP_3436 23461c3b39c3b8820db3acd1c6e9ac5c 1256 SMART SM00869 977 1241 8.8E-35 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_3436 23461c3b39c3b8820db3acd1c6e9ac5c 1256 SUPERFAMILY SSF51126 403 922 5.65E-35 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor YP_3225 8d6c31a4104b0f9724bb75abf31402f1 175 Gene3D G3DSA:3.40.1000.10 38 175 2.9E-8 T 14-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YP_3225 8d6c31a4104b0f9724bb75abf31402f1 175 Pfam PF08786 DcrB 41 171 1.3E-26 T 14-10-2018 IPR014894 Protein DcrB YP_1941 4f1f625ed89fe4973d00fc076080a6b4 399 SUPERFAMILY SSF53383 3 381 2.29E-98 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_1941 4f1f625ed89fe4973d00fc076080a6b4 399 Gene3D G3DSA:3.40.640.10 19 263 3.9E-144 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_1941 4f1f625ed89fe4973d00fc076080a6b4 399 PIRSF PIRSF005572 5 386 2.9E-125 T 14-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 YP_1941 4f1f625ed89fe4973d00fc076080a6b4 399 Pfam PF00266 Aminotransferase class-V 8 371 1.6E-83 T 14-10-2018 IPR000192 Aminotransferase class V domain YP_1941 4f1f625ed89fe4973d00fc076080a6b4 399 Gene3D G3DSA:3.90.1150.10 8 378 3.9E-144 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_0660 03e7d5af06be86b4782e3cf3d27606c4 249 Pfam PF03942 DTW domain 45 229 1.5E-43 T 14-10-2018 IPR005636 DTW YP_0660 03e7d5af06be86b4782e3cf3d27606c4 249 SMART SM01144 42 234 4.3E-75 T 14-10-2018 IPR005636 DTW YP_2462 0b0580b829316dc37571b0f007f48a09 322 Gene3D G3DSA:1.10.3720.10 87 316 8.6E-17 T 14-10-2018 IPR035906 MetI-like superfamily YP_2462 0b0580b829316dc37571b0f007f48a09 322 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 317 2.4E-37 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2462 0b0580b829316dc37571b0f007f48a09 322 SUPERFAMILY SSF161098 92 302 9.35E-17 T 14-10-2018 IPR035906 MetI-like superfamily YP_0044 d432d1fea33d6e4e5300c080fb7696a1 287 Pfam PF08340 Domain of unknown function (DUF1732) 203 287 2.6E-34 T 14-10-2018 IPR013551 Domain of unknown function DUF1732 YP_0044 d432d1fea33d6e4e5300c080fb7696a1 287 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 287 1.9E-130 T 14-10-2018 IPR005229 Conserved hypothetical protein CHP00255 YP_0044 d432d1fea33d6e4e5300c080fb7696a1 287 Pfam PF03755 YicC-like family, N-terminal region 2 153 7.5E-44 T 14-10-2018 IPR013527 YicC-like, N-terminal YP_0687 1773cd52b1519fa9f929afc8a250b807 248 Gene3D G3DSA:1.10.10.2690 128 234 1.1E-22 T 14-10-2018 YP_0687 1773cd52b1519fa9f929afc8a250b807 248 Pfam PF03333 Adhesin biosynthesis transcription regulatory protein 147 223 1.8E-12 T 14-10-2018 IPR004356 Adhesin operon regulatory protein GO:0006355 YP_2554 6054f250f7dc3fafa7229bfc0bfcb3cb 340 Pfam PF03824 High-affinity nickel-transport protein 74 326 8.7E-42 T 14-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 YP_1287 c7f23264fd8f73e76fe817ce188e64e5 837 Pfam PF00577 Outer membrane usher protein 190 746 1.4E-193 T 14-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YP_1287 c7f23264fd8f73e76fe817ce188e64e5 837 Gene3D G3DSA:2.60.40.3110 260 349 2.9E-32 T 14-10-2018 YP_1287 c7f23264fd8f73e76fe817ce188e64e5 837 Gene3D G3DSA:2.60.40.2070 752 837 1.6E-27 T 14-10-2018 YP_1287 c7f23264fd8f73e76fe817ce188e64e5 837 Pfam PF13953 PapC C-terminal domain 755 820 1.7E-24 T 14-10-2018 IPR025949 PapC-like, C-terminal domain YP_1287 c7f23264fd8f73e76fe817ce188e64e5 837 Gene3D G3DSA:2.60.40.2610 661 751 4.2E-24 T 14-10-2018 YP_1287 c7f23264fd8f73e76fe817ce188e64e5 837 Pfam PF13954 PapC N-terminal domain 27 173 3.6E-38 T 14-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 YP_1287 c7f23264fd8f73e76fe817ce188e64e5 837 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 302 312 - T 14-10-2018 IPR018030 Fimbrial membrane usher, conserved site YP_1287 c7f23264fd8f73e76fe817ce188e64e5 837 SUPERFAMILY SSF141729 26 150 4.58E-28 T 14-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 YP_1287 c7f23264fd8f73e76fe817ce188e64e5 837 Gene3D G3DSA:3.10.20.410 41 162 1.1E-38 T 14-10-2018 YP_3052 c6d9dfd68aa308e35d630e525064dbec 379 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 178 206 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YP_3052 c6d9dfd68aa308e35d630e525064dbec 379 Gene3D G3DSA:2.160.10.10 163 240 3.7E-6 T 14-10-2018 YP_3052 c6d9dfd68aa308e35d630e525064dbec 379 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 172 200 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YP_3052 c6d9dfd68aa308e35d630e525064dbec 379 SUPERFAMILY SSF51161 168 227 8.32E-9 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily YP_3052 c6d9dfd68aa308e35d630e525064dbec 379 Gene3D G3DSA:3.30.750.140 241 352 7.9E-20 T 14-10-2018 IPR038610 FliK-like, C-terminal domain superfamily YP_3052 c6d9dfd68aa308e35d630e525064dbec 379 Pfam PF02120 Flagellar hook-length control protein FliK 260 343 7.6E-21 T 14-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal YP_0726 6c06332a057275de8b84524376834884 414 Pfam PF00149 Calcineurin-like phosphoesterase 1 97 4.7E-13 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 YP_0726 6c06332a057275de8b84524376834884 414 Gene3D G3DSA:3.60.21.10 1 281 3.3E-88 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like YP_0726 6c06332a057275de8b84524376834884 414 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 282 378 2.0E-24 T 14-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain YP_0726 6c06332a057275de8b84524376834884 414 Gene3D G3DSA:3.30.160.720 283 345 1.4E-25 T 14-10-2018 YP_0726 6c06332a057275de8b84524376834884 414 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 259 4.6E-76 T 14-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 YP_0726 6c06332a057275de8b84524376834884 414 SUPERFAMILY SSF56300 1 340 2.66E-59 T 14-10-2018 YP_0565 1834649026af33c0268bc7cb1a058b3f 87 Pfam PF07338 Protein of unknown function (DUF1471) 34 87 6.1E-22 T 14-10-2018 IPR010854 Domain of unknown function DUF1471 YP_0565 1834649026af33c0268bc7cb1a058b3f 87 SUPERFAMILY SSF159871 4 87 1.7E-26 T 14-10-2018 IPR036275 YdgH-like superfamily YP_0565 1834649026af33c0268bc7cb1a058b3f 87 Gene3D G3DSA:3.30.1660.10 21 87 9.3E-24 T 14-10-2018 IPR025543 Dodecin-like YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 Pfam PF12468 Type III secretion system leucine rich repeat protein 1 59 7.1E-21 T 14-10-2018 IPR032674 LRR-containing bacterial E3 ligase, N-terminal MetaCyc: PWY-7511 YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 Gene3D G3DSA:1.20.1270.130 301 382 6.5E-27 T 14-10-2018 YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 SUPERFAMILY SSF52058 68 281 1.84E-30 T 14-10-2018 YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 SMART SM00369 107 131 56.0 T 14-10-2018 IPR003591 Leucine-rich repeat, typical subtype YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 SMART SM00369 190 214 25.0 T 14-10-2018 IPR003591 Leucine-rich repeat, typical subtype YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 SMART SM00369 132 152 180.0 T 14-10-2018 IPR003591 Leucine-rich repeat, typical subtype YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 SMART SM00369 215 235 100.0 T 14-10-2018 IPR003591 Leucine-rich repeat, typical subtype YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 Gene3D G3DSA:1.20.58.360 383 521 3.0E-49 T 14-10-2018 YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 SMART SM00364 233 252 1.2 T 14-10-2018 YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 SMART SM00364 150 170 530.0 T 14-10-2018 YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 SMART SM00364 129 148 0.0046 T 14-10-2018 YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 SMART SM00364 84 106 160.0 T 14-10-2018 YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 SMART SM00364 108 127 0.06 T 14-10-2018 YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 SMART SM00364 171 190 2.7 T 14-10-2018 YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 SMART SM00364 191 210 0.0027 T 14-10-2018 YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 SMART SM00364 212 231 0.061 T 14-10-2018 YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 Gene3D G3DSA:1.20.58.90 522 594 7.5E-27 T 14-10-2018 YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 Pfam PF14496 C-terminal novel E3 ligase, LRR-interacting 310 525 1.5E-71 T 14-10-2018 IPR029487 Novel E3 ligase domain GO:0004842|GO:0016567 MetaCyc: PWY-7511 YP_3418 2fe76b8a543478ef54bac950acc9b94e 605 Gene3D G3DSA:3.80.10.10 29 296 3.8E-54 T 14-10-2018 IPR032675 Leucine-rich repeat domain superfamily YP_2071 647ccffda4f98e1dfc999a7c6616f044 343 Gene3D G3DSA:3.40.190.10 40 150 3.1E-13 T 14-10-2018 YP_2071 647ccffda4f98e1dfc999a7c6616f044 343 Gene3D G3DSA:3.40.190.10 151 337 6.1E-25 T 14-10-2018 YP_2071 647ccffda4f98e1dfc999a7c6616f044 343 SUPERFAMILY SSF53850 44 278 9.17E-41 T 14-10-2018 YP_2071 647ccffda4f98e1dfc999a7c6616f044 343 Pfam PF13379 NMT1-like family 56 268 5.2E-20 T 14-10-2018 YP_2758 c770e0fa04c72b84721f7db4b3ad3961 507 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 27 501 9.8E-218 T 14-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YP_2758 c770e0fa04c72b84721f7db4b3ad3961 507 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 76 501 8.5E-191 T 14-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YP_2800 9f51702f299d9c4c0274c26c373c200e 282 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 239 265 - T 14-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 YP_2800 9f51702f299d9c4c0274c26c373c200e 282 Pfam PF01148 Cytidylyltransferase family 4 279 2.5E-71 T 14-10-2018 YP_2533 a43d4f59be23734079f8fb91e4451fe3 231 Gene3D G3DSA:3.40.50.1000 29 229 1.4E-13 T 14-10-2018 IPR023214 HAD superfamily YP_2533 a43d4f59be23734079f8fb91e4451fe3 231 Gene3D G3DSA:1.20.1440.100 40 113 1.4E-13 T 14-10-2018 YP_2533 a43d4f59be23734079f8fb91e4451fe3 231 SUPERFAMILY SSF56784 22 213 9.18E-10 T 14-10-2018 IPR036412 HAD-like superfamily YP_2533 a43d4f59be23734079f8fb91e4451fe3 231 Pfam PF12710 haloacid dehalogenase-like hydrolase 29 212 1.8E-13 T 14-10-2018 YP_2533 a43d4f59be23734079f8fb91e4451fe3 231 TIGRFAM TIGR01545 YfhB_g-proteo: HAD hydrolase, family IF 22 231 4.0E-135 T 14-10-2018 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 YP_2144 37eae07895b81fbc439daf1a4a580bf6 548 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 80 459 1.4E-87 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain YP_2144 37eae07895b81fbc439daf1a4a580bf6 548 Gene3D G3DSA:3.10.105.10 300 517 3.2E-151 T 14-10-2018 YP_2144 37eae07895b81fbc439daf1a4a580bf6 548 Gene3D G3DSA:3.90.76.10 47 219 3.2E-151 T 14-10-2018 YP_2144 37eae07895b81fbc439daf1a4a580bf6 548 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 85 107 - T 14-10-2018 IPR023765 Solute-binding protein family 5, conserved site YP_2144 37eae07895b81fbc439daf1a4a580bf6 548 Gene3D G3DSA:3.40.190.10 220 529 3.2E-151 T 14-10-2018 YP_2144 37eae07895b81fbc439daf1a4a580bf6 548 SUPERFAMILY SSF53850 37 539 1.57E-137 T 14-10-2018 YP_2144 37eae07895b81fbc439daf1a4a580bf6 548 PIRSF PIRSF002741 1 544 4.0E-102 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 YP_3291 7300919bff9f6778d76714c01487cb49 183 Pfam PF13673 Acetyltransferase (GNAT) domain 49 149 1.8E-11 T 14-10-2018 IPR000182 GNAT domain YP_3291 7300919bff9f6778d76714c01487cb49 183 SUPERFAMILY SSF55729 2 171 1.1E-22 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_3291 7300919bff9f6778d76714c01487cb49 183 Gene3D G3DSA:3.40.630.30 1 173 5.1E-40 T 14-10-2018 YP_3056 166f1c9d2ed6f8b97f73213d4169b413 303 Pfam PF00691 OmpA family 170 265 1.3E-12 T 14-10-2018 IPR006665 OmpA-like domain YP_3056 166f1c9d2ed6f8b97f73213d4169b413 303 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 18 67 6.1E-14 T 14-10-2018 IPR025713 Motility protein B, N-terminal domain YP_3056 166f1c9d2ed6f8b97f73213d4169b413 303 SUPERFAMILY SSF103088 155 273 2.09E-19 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_3056 166f1c9d2ed6f8b97f73213d4169b413 303 Gene3D G3DSA:3.30.1330.60 89 289 1.1E-42 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_pCD47 4c07a615f6f6698afc8300ecb9b4a68c 122 Pfam PF09474 Type III secretion system YscX (type_III_YscX) 2 122 9.0E-54 T 14-10-2018 IPR012672 Type III secretion system YscX YP_pCD47 4c07a615f6f6698afc8300ecb9b4a68c 122 TIGRFAM TIGR02502 type_III_YscX: type III secretion protein, YscX family 2 122 1.3E-59 T 14-10-2018 IPR012672 Type III secretion system YscX YP_0729 d348ec641e8807aa396deda22107d1a9 354 Gene3D G3DSA:3.40.190.10 154 296 8.5E-105 T 14-10-2018 YP_0729 d348ec641e8807aa396deda22107d1a9 354 Pfam PF12849 PBP superfamily domain 67 319 8.9E-30 T 14-10-2018 IPR024370 PBP domain YP_0729 d348ec641e8807aa396deda22107d1a9 354 SUPERFAMILY SSF53850 70 351 1.63E-66 T 14-10-2018 YP_0729 d348ec641e8807aa396deda22107d1a9 354 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 46 338 1.2E-68 T 14-10-2018 IPR011862 Phosphate binding protein GO:0042301 YP_0729 d348ec641e8807aa396deda22107d1a9 354 Gene3D G3DSA:3.40.190.10 69 340 8.5E-105 T 14-10-2018 YP_0107 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 335 405 1.2E-6 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_0107 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 SMART SM01086 335 434 4.5E-24 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_0107 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 SMART SM00382 49 332 1.1E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0107 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 103 8.7E-7 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_0107 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 Pfam PF07724 AAA domain (Cdc48 subfamily) 187 329 2.2E-41 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_0107 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 Gene3D G3DSA:1.10.8.60 335 440 4.4E-42 T 14-10-2018 YP_0107 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 SUPERFAMILY SSF52540 3 441 1.1E-94 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0107 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 443 2.4E-231 T 14-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 YP_0107 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 443 43.688 T 14-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 YP_2471 8eec57ebe472f595c5912a7e523754e9 220 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 14 185 2.1E-30 T 14-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain YP_2471 8eec57ebe472f595c5912a7e523754e9 220 PIRSF PIRSF005624 2 217 2.6E-47 T 14-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 YP_2471 8eec57ebe472f595c5912a7e523754e9 220 Hamap MF_01389 Urease accessory protein UreG [ureG]. 10 211 45.13 T 14-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 YP_2471 8eec57ebe472f595c5912a7e523754e9 220 Gene3D G3DSA:3.40.50.300 11 211 4.4E-45 T 14-10-2018 YP_2471 8eec57ebe472f595c5912a7e523754e9 220 SUPERFAMILY SSF52540 8 206 2.18E-36 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2471 8eec57ebe472f595c5912a7e523754e9 220 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 13 209 6.6E-79 T 14-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 YP_0955 9501c43a4892c59fc5bc401e83cf7268 107 Pfam PF04226 Transglycosylase associated protein 58 106 3.9E-15 T 14-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 YP_2156 d77a9a01a0983fe1d9a37a8de75087d0 217 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 39 121 1.2E-22 T 14-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 YP_2156 d77a9a01a0983fe1d9a37a8de75087d0 217 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 3 217 2.8E-95 T 14-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 YP_2156 d77a9a01a0983fe1d9a37a8de75087d0 217 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 177 217 9.6E-19 T 14-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 YP_2156 d77a9a01a0983fe1d9a37a8de75087d0 217 PIRSF PIRSF000190 1 217 3.9E-82 T 14-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 YP_2156 d77a9a01a0983fe1d9a37a8de75087d0 217 Gene3D G3DSA:2.30.110.10 19 217 2.5E-77 T 14-10-2018 IPR012349 FMN-binding split barrel GO:0048037 YP_2156 d77a9a01a0983fe1d9a37a8de75087d0 217 SUPERFAMILY SSF50475 20 217 4.86E-67 T 14-10-2018 YP_2156 d77a9a01a0983fe1d9a37a8de75087d0 217 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 15 217 38.3 T 14-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 YP_2156 d77a9a01a0983fe1d9a37a8de75087d0 217 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 187 200 - T 14-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 YP_pMT112 6c2e25e0009cee58e88d403e9a9b4ff4 323 Pfam PF02195 ParB-like nuclease domain 62 137 2.2E-9 T 14-10-2018 IPR003115 ParB/Sulfiredoxin YP_pMT112 6c2e25e0009cee58e88d403e9a9b4ff4 323 SMART SM00470 51 138 4.6E-11 T 14-10-2018 IPR003115 ParB/Sulfiredoxin YP_pMT112 6c2e25e0009cee58e88d403e9a9b4ff4 323 Pfam PF08775 ParB family 194 316 4.7E-42 T 14-10-2018 IPR014884 ParB protein family, C-terminal YP_pMT112 6c2e25e0009cee58e88d403e9a9b4ff4 323 Gene3D G3DSA:1.10.10.2830 143 257 1.5E-31 T 14-10-2018 YP_pMT112 6c2e25e0009cee58e88d403e9a9b4ff4 323 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 54 222 2.6E-29 T 14-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 YP_1914 673c30b4c1dc500fd62b95a004245c90 464 Gene3D G3DSA:3.40.50.300 346 462 2.0E-26 T 14-10-2018 YP_1914 673c30b4c1dc500fd62b95a004245c90 464 Pfam PF13307 Helicase C-terminal domain 350 446 3.7E-26 T 14-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 YP_1914 673c30b4c1dc500fd62b95a004245c90 464 SUPERFAMILY SSF52540 13 232 1.61E-24 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1914 673c30b4c1dc500fd62b95a004245c90 464 Gene3D G3DSA:3.40.50.300 18 283 1.5E-46 T 14-10-2018 YP_1914 673c30b4c1dc500fd62b95a004245c90 464 Pfam PF06733 DEAD_2 181 247 4.0E-5 T 14-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 YP_1914 673c30b4c1dc500fd62b95a004245c90 464 SMART SM00487 16 342 0.0018 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YP_1914 673c30b4c1dc500fd62b95a004245c90 464 SMART SM00491 312 433 1.6E-30 T 14-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 YP_1868 ebc4341aa1df9cfc44a0ddb2bbe78611 269 SUPERFAMILY SSF48452 190 258 1.92E-5 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_1868 ebc4341aa1df9cfc44a0ddb2bbe78611 269 Pfam PF13369 Transglutaminase-like superfamily 33 184 7.4E-44 T 14-10-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 YP_1868 ebc4341aa1df9cfc44a0ddb2bbe78611 269 Pfam PF13371 Tetratricopeptide repeat 187 258 1.4E-25 T 14-10-2018 YP_0637 d32e8c335cbcaa0909c41e775bef9634 152 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 152 4.8E-52 T 14-10-2018 IPR004375 YhcH/YjgK/YiaL family YP_0637 d32e8c335cbcaa0909c41e775bef9634 152 SUPERFAMILY SSF51197 1 151 2.0E-44 T 14-10-2018 YP_0637 d32e8c335cbcaa0909c41e775bef9634 152 Gene3D G3DSA:2.60.120.370 1 152 3.1E-41 T 14-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily YP_0637 d32e8c335cbcaa0909c41e775bef9634 152 Pfam PF04074 Domain of unknown function (DUF386) 1 149 6.6E-45 T 14-10-2018 IPR004375 YhcH/YjgK/YiaL family YP_3756 9cfc2e94b0e9ed4f17c376b9cb448d42 390 SMART SM00267 209 379 1.6E-50 T 14-10-2018 IPR000160 GGDEF domain YP_3756 9cfc2e94b0e9ed4f17c376b9cb448d42 390 Gene3D G3DSA:3.30.70.270 206 381 5.9E-50 T 14-10-2018 YP_3756 9cfc2e94b0e9ed4f17c376b9cb448d42 390 SUPERFAMILY SSF55073 225 380 9.42E-43 T 14-10-2018 IPR029787 Nucleotide cyclase YP_3756 9cfc2e94b0e9ed4f17c376b9cb448d42 390 Pfam PF00990 Diguanylate cyclase, GGDEF domain 221 375 1.9E-45 T 14-10-2018 IPR000160 GGDEF domain YP_3756 9cfc2e94b0e9ed4f17c376b9cb448d42 390 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 219 379 6.2E-44 T 14-10-2018 IPR000160 GGDEF domain YP_1471 538dd87df08014639f4f18cdea8eecef 349 Gene3D G3DSA:3.40.50.2300 173 302 1.6E-83 T 14-10-2018 YP_1471 538dd87df08014639f4f18cdea8eecef 349 Gene3D G3DSA:3.40.50.2300 87 327 1.6E-83 T 14-10-2018 YP_1471 538dd87df08014639f4f18cdea8eecef 349 Gene3D G3DSA:1.10.260.40 8 68 6.8E-21 T 14-10-2018 YP_1471 538dd87df08014639f4f18cdea8eecef 349 SUPERFAMILY SSF53822 68 330 1.26E-40 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_1471 538dd87df08014639f4f18cdea8eecef 349 SMART SM00354 11 81 9.4E-20 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_1471 538dd87df08014639f4f18cdea8eecef 349 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 58 4.9E-12 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_1471 538dd87df08014639f4f18cdea8eecef 349 SUPERFAMILY SSF47413 11 69 1.02E-16 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_1471 538dd87df08014639f4f18cdea8eecef 349 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 75 321 3.3E-33 T 14-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain YP_0505 03d2438c4a87a8801d6649c3c51a021d 97 SUPERFAMILY SSF50129 1 96 3.06E-31 T 14-10-2018 IPR011032 GroES-like superfamily YP_0505 03d2438c4a87a8801d6649c3c51a021d 97 Gene3D G3DSA:2.30.33.40 1 97 1.0E-36 T 14-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 YP_0505 03d2438c4a87a8801d6649c3c51a021d 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 14-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 YP_0505 03d2438c4a87a8801d6649c3c51a021d 97 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 23.991 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 YP_0505 03d2438c4a87a8801d6649c3c51a021d 97 Pfam PF00166 Chaperonin 10 Kd subunit 2 95 8.7E-30 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 YP_0505 03d2438c4a87a8801d6649c3c51a021d 97 SMART SM00883 2 95 1.1E-48 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 YP_0505 03d2438c4a87a8801d6649c3c51a021d 97 PRINTS PR00297 10kDa chaperonin signature 60 72 1.7E-27 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 YP_0505 03d2438c4a87a8801d6649c3c51a021d 97 PRINTS PR00297 10kDa chaperonin signature 25 46 1.7E-27 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 YP_0505 03d2438c4a87a8801d6649c3c51a021d 97 PRINTS PR00297 10kDa chaperonin signature 3 18 1.7E-27 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 YP_0505 03d2438c4a87a8801d6649c3c51a021d 97 PRINTS PR00297 10kDa chaperonin signature 82 95 1.7E-27 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 YP_1831 da6918879e0c794e9ae890455ae3f31f 598 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 167 7.5E-21 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YP_1831 da6918879e0c794e9ae890455ae3f31f 598 Gene3D G3DSA:3.40.50.720 3 220 8.1E-35 T 14-10-2018 YP_1831 da6918879e0c794e9ae890455ae3f31f 598 SUPERFAMILY SSF53448 282 502 2.48E-15 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_1831 da6918879e0c794e9ae890455ae3f31f 598 SUPERFAMILY SSF51735 1 210 9.09E-34 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1831 da6918879e0c794e9ae890455ae3f31f 598 Pfam PF13506 Glycosyl transferase family 21 311 479 2.9E-38 T 14-10-2018 IPR025993 Ceramide glucosyltransferase GO:0016757 KEGG: 00600+2.4.1.80|MetaCyc: PWY-5129|MetaCyc: PWY-7836|MetaCyc: PWY-7838|MetaCyc: PWY-7839|MetaCyc: PWY-7841|Reactome: R-HSA-1660662 YP_1346 8cfdc9bd6460182c5a2831123dd66e59 174 Pfam PF07977 FabA-like domain 36 165 2.3E-15 T 14-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YP_1346 8cfdc9bd6460182c5a2831123dd66e59 174 SUPERFAMILY SSF54637 32 170 3.55E-27 T 14-10-2018 IPR029069 HotDog domain superfamily YP_1346 8cfdc9bd6460182c5a2831123dd66e59 174 Gene3D G3DSA:3.10.129.10 25 173 1.6E-33 T 14-10-2018 YP_3339 56cef09b3dd4688792b510b5013e46b8 280 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 266 41.75 T 14-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 YP_3339 56cef09b3dd4688792b510b5013e46b8 280 SUPERFAMILY SSF53335 9 279 2.48E-100 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3339 56cef09b3dd4688792b510b5013e46b8 280 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 241 247 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YP_3339 56cef09b3dd4688792b510b5013e46b8 280 Gene3D G3DSA:3.40.50.150 1 280 6.6E-120 T 14-10-2018 YP_3339 56cef09b3dd4688792b510b5013e46b8 280 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 278 7.7E-111 T 14-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 YP_1690 f9a36730617740831c2622055212fa46 237 Pfam PF00005 ABC transporter 33 178 2.2E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1690 f9a36730617740831c2622055212fa46 237 Gene3D G3DSA:3.40.50.300 15 237 3.3E-68 T 14-10-2018 YP_1690 f9a36730617740831c2622055212fa46 237 SMART SM00382 42 226 3.6E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1690 f9a36730617740831c2622055212fa46 237 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1690 f9a36730617740831c2622055212fa46 237 SUPERFAMILY SSF52540 17 233 2.32E-66 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0217 13b85a28b0b4b309ba6e7945e5bc55a1 123 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 123 27.55 T 14-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 YP_0217 13b85a28b0b4b309ba6e7945e5bc55a1 123 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 14-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YP_0217 13b85a28b0b4b309ba6e7945e5bc55a1 123 Pfam PF00238 Ribosomal protein L14p/L23e 1 123 6.8E-55 T 14-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 YP_0217 13b85a28b0b4b309ba6e7945e5bc55a1 123 SUPERFAMILY SSF50193 2 122 1.57E-51 T 14-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 YP_0217 13b85a28b0b4b309ba6e7945e5bc55a1 123 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 123 5.0E-60 T 14-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 YP_0217 13b85a28b0b4b309ba6e7945e5bc55a1 123 SMART SM01374 1 123 2.8E-86 T 14-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 YP_0217 13b85a28b0b4b309ba6e7945e5bc55a1 123 Gene3D G3DSA:2.40.150.20 1 123 2.9E-57 T 14-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 YP_3445 503b56f80748d6fbd7e9cdb458176e45 477 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 43 468 1.3E-107 T 14-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 YP_3445 503b56f80748d6fbd7e9cdb458176e45 477 Gene3D G3DSA:1.20.1250.20 251 458 2.7E-10 T 14-10-2018 YP_3445 503b56f80748d6fbd7e9cdb458176e45 477 Pfam PF13347 MFS/sugar transport protein 44 455 2.6E-76 T 14-10-2018 YP_3445 503b56f80748d6fbd7e9cdb458176e45 477 Gene3D G3DSA:1.20.1250.20 36 234 1.3E-10 T 14-10-2018 YP_3445 503b56f80748d6fbd7e9cdb458176e45 477 SUPERFAMILY SSF103473 37 453 3.49E-27 T 14-10-2018 IPR036259 MFS transporter superfamily YP_0555 59ab0dc763a1bed20304c7b0de0efe85 212 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 26 210 4.3E-81 T 14-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ YP_0555 59ab0dc763a1bed20304c7b0de0efe85 212 Gene3D G3DSA:3.40.30.10 63 210 4.6E-7 T 14-10-2018 YP_0555 59ab0dc763a1bed20304c7b0de0efe85 212 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 48 208 3.4E-76 T 14-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ YP_0555 59ab0dc763a1bed20304c7b0de0efe85 212 SUPERFAMILY SSF52833 74 206 4.48E-5 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_0074 a81c139d2af339a872251fdd98bf5b1b 240 Gene3D G3DSA:3.40.50.2300 9 137 4.0E-42 T 14-10-2018 YP_0074 a81c139d2af339a872251fdd98bf5b1b 240 Gene3D G3DSA:1.10.10.10 138 240 1.1E-28 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0074 a81c139d2af339a872251fdd98bf5b1b 240 SMART SM00448 10 119 7.7E-47 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0074 a81c139d2af339a872251fdd98bf5b1b 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 236 2.3E-21 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_0074 a81c139d2af339a872251fdd98bf5b1b 240 SUPERFAMILY SSF52172 8 196 3.13E-42 T 14-10-2018 IPR011006 CheY-like superfamily YP_0074 a81c139d2af339a872251fdd98bf5b1b 240 SMART SM00862 160 236 2.6E-22 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_0074 a81c139d2af339a872251fdd98bf5b1b 240 Pfam PF00072 Response regulator receiver domain 12 120 1.1E-30 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_2700 0353af32e1cfe51bfa06226216456b24 270 Gene3D G3DSA:3.40.50.300 19 266 3.3E-64 T 14-10-2018 YP_2700 0353af32e1cfe51bfa06226216456b24 270 SMART SM00382 48 242 3.2E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2700 0353af32e1cfe51bfa06226216456b24 270 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2700 0353af32e1cfe51bfa06226216456b24 270 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 24 270 2.0E-117 T 14-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 YP_2700 0353af32e1cfe51bfa06226216456b24 270 SUPERFAMILY SSF52540 21 256 1.45E-59 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2700 0353af32e1cfe51bfa06226216456b24 270 Pfam PF00005 ABC transporter 39 195 5.5E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1656 1750ff9f9ea5431fd38b165408e4a857 600 SUPERFAMILY SSF90123 16 331 3.66E-44 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_1656 1750ff9f9ea5431fd38b165408e4a857 600 SUPERFAMILY SSF52540 337 579 3.28E-86 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1656 1750ff9f9ea5431fd38b165408e4a857 600 Gene3D G3DSA:1.20.1560.10 2 328 3.7E-36 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_1656 1750ff9f9ea5431fd38b165408e4a857 600 Pfam PF00664 ABC transporter transmembrane region 68 277 7.2E-21 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YP_1656 1750ff9f9ea5431fd38b165408e4a857 600 Pfam PF00005 ABC transporter 360 509 3.8E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1656 1750ff9f9ea5431fd38b165408e4a857 600 Gene3D G3DSA:3.40.50.300 333 586 5.0E-85 T 14-10-2018 YP_1656 1750ff9f9ea5431fd38b165408e4a857 600 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1656 1750ff9f9ea5431fd38b165408e4a857 600 SMART SM00382 369 563 6.5E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0148 95427428701084c6401261f4196a2b1b 195 Pfam PF05137 Fimbrial assembly protein (PilN) 95 165 9.3E-14 T 14-10-2018 IPR007813 Fimbrial assembly PilN YP_0551 68bb4c8a2d26d86fd48bb8d5d954fd85 206 Gene3D G3DSA:1.10.287.460 5 67 7.8E-18 T 14-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 YP_0551 68bb4c8a2d26d86fd48bb8d5d954fd85 206 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 3 108 1.6E-22 T 14-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 YP_0551 68bb4c8a2d26d86fd48bb8d5d954fd85 206 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 116 203 1.3E-26 T 14-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YP_0551 68bb4c8a2d26d86fd48bb8d5d954fd85 206 SUPERFAMILY SSF54534 8 205 2.72E-54 T 14-10-2018 YP_0551 68bb4c8a2d26d86fd48bb8d5d954fd85 206 Gene3D G3DSA:3.10.50.40 68 206 1.8E-49 T 14-10-2018 YP_0143 97b0518deeb16f7bce8b12c1b3702497 715 ProDom PD147088 MEMBRANE INNER TRANSMEMBRANE IGAA HOMOLOG DEHYDROGENASE GROWTH ATTENUATOR INTRACELLULAR GENOME 22 704 0.0 T 14-10-2018 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 YP_0143 97b0518deeb16f7bce8b12c1b3702497 715 Pfam PF07095 Intracellular growth attenuator protein IgaA 1 710 0.0 T 14-10-2018 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 YP_2132 f9e9eae116cee3014d7b8d3d446688a6 148 Pfam PF09722 Protein of unknown function (DUF2384) 94 145 4.1E-14 T 14-10-2018 IPR024467 Domain of unknown function DUF2384 YP_2132 f9e9eae116cee3014d7b8d3d446688a6 148 TIGRFAM TIGR02293 TAS_TIGR02293: putative toxin-antitoxin system antitoxin component, TIGR02293 family 15 147 1.1E-54 T 14-10-2018 IPR011979 Conserved hypothetical protein CHP02293 YP_2930 f8b8f0e235eda7a0fdc6e45396d5a204 426 Pfam PF01547 Bacterial extracellular solute-binding protein 46 336 1.3E-25 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein YP_2930 f8b8f0e235eda7a0fdc6e45396d5a204 426 SUPERFAMILY SSF53850 34 423 2.93E-46 T 14-10-2018 YP_2930 f8b8f0e235eda7a0fdc6e45396d5a204 426 Gene3D G3DSA:3.40.190.10 34 426 1.3E-49 T 14-10-2018 YP_3637 e3c80e7bfe426df4c6f63d87d75c58e1 320 SUPERFAMILY SSF53335 14 318 1.14E-46 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3637 e3c80e7bfe426df4c6f63d87d75c58e1 320 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 14 318 38.391 T 14-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 YP_3637 e3c80e7bfe426df4c6f63d87d75c58e1 320 SUPERFAMILY SSF81799 121 220 2.49E-34 T 14-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 YP_3637 e3c80e7bfe426df4c6f63d87d75c58e1 320 Gene3D G3DSA:1.10.150.170 119 221 6.4E-107 T 14-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 YP_3637 e3c80e7bfe426df4c6f63d87d75c58e1 320 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 10 317 5.1E-126 T 14-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 YP_3637 e3c80e7bfe426df4c6f63d87d75c58e1 320 PIRSF PIRSF004486 8 319 1.8E-100 T 14-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 YP_3637 e3c80e7bfe426df4c6f63d87d75c58e1 320 Pfam PF01795 MraW methylase family 12 317 1.9E-116 T 14-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 YP_3637 e3c80e7bfe426df4c6f63d87d75c58e1 320 Gene3D G3DSA:3.40.50.150 17 317 6.4E-107 T 14-10-2018 YP_2868 c1d1882fe799214596cdfb72a59c4e5e 346 Gene3D G3DSA:3.20.20.100 1 346 1.8E-139 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_2868 c1d1882fe799214596cdfb72a59c4e5e 346 SUPERFAMILY SSF51430 1 344 6.29E-108 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_2868 c1d1882fe799214596cdfb72a59c4e5e 346 Pfam PF00248 Aldo/keto reductase family 16 337 2.3E-74 T 14-10-2018 IPR023210 NADP-dependent oxidoreductase domain YP_2064 e091f453d629023d18ff32bc28ec49e1 405 Gene3D G3DSA:3.30.420.40 209 377 1.1E-89 T 14-10-2018 YP_2064 e091f453d629023d18ff32bc28ec49e1 405 Gene3D G3DSA:3.30.420.40 92 382 1.1E-89 T 14-10-2018 YP_2064 e091f453d629023d18ff32bc28ec49e1 405 Pfam PF00480 ROK family 96 389 1.8E-49 T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YP_2064 e091f453d629023d18ff32bc28ec49e1 405 SUPERFAMILY SSF53067 88 394 4.51E-43 T 14-10-2018 YP_2064 e091f453d629023d18ff32bc28ec49e1 405 Gene3D G3DSA:1.10.10.10 1 82 5.1E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2064 e091f453d629023d18ff32bc28ec49e1 405 SUPERFAMILY SSF46785 12 77 1.23E-15 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_pMT046 4dc5b4903d7c7efcf6f1869fcf1191c1 380 SUPERFAMILY SSF47240 3 343 4.43E-92 T 14-10-2018 IPR009078 Ferritin-like superfamily YP_pMT046 4dc5b4903d7c7efcf6f1869fcf1191c1 380 Pfam PF00268 Ribonucleotide reductase, small chain 32 330 9.8E-44 T 14-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_pMT046 4dc5b4903d7c7efcf6f1869fcf1191c1 380 Gene3D G3DSA:1.10.620.20 2 343 2.3E-123 T 14-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 YP_1912 e4787dcddb5ad552669824bc494fa6a8 115 SUPERFAMILY SSF103481 17 114 1.15E-17 T 14-10-2018 YP_1912 e4787dcddb5ad552669824bc494fa6a8 115 Pfam PF00893 Small Multidrug Resistance protein 17 105 4.4E-27 T 14-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 YP_1912 e4787dcddb5ad552669824bc494fa6a8 115 Hamap MF_01597 Spermidine export protein MdtI [mdtI]. 7 115 29.75 T 14-10-2018 IPR023737 Spermidine export protein MdtI GO:0005886|GO:0015606|GO:0015848 YP_1912 e4787dcddb5ad552669824bc494fa6a8 115 Gene3D G3DSA:1.10.3730.20 14 115 5.2E-28 T 14-10-2018 YP_3514 3c88f02d1589ff246f87787a5f38841b 106 Pfam PF00355 Rieske [2Fe-2S] domain 3 88 2.7E-18 T 14-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 YP_3514 3c88f02d1589ff246f87787a5f38841b 106 Gene3D G3DSA:2.102.10.10 2 105 8.3E-30 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 YP_3514 3c88f02d1589ff246f87787a5f38841b 106 SUPERFAMILY SSF50022 1 103 5.11E-31 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 YP_pCD25 668648aace7d10c2918d28e42cb373cd 115 TIGRFAM TIGR02497 yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain 77 112 1.7E-16 T 14-10-2018 IPR012670 Type III secretion system, YscI/HrpB GO:0009306 YP_pCD25 668648aace7d10c2918d28e42cb373cd 115 Pfam PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI 29 113 1.6E-20 T 14-10-2018 IPR012670 Type III secretion system, YscI/HrpB GO:0009306 YP_1350 04c3940b1ef4a2009a1e00490e848851 256 SUPERFAMILY SSF52096 28 247 2.79E-36 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YP_1350 04c3940b1ef4a2009a1e00490e848851 256 Pfam PF00378 Enoyl-CoA hydratase/isomerase 30 245 3.8E-30 T 14-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 YP_1350 04c3940b1ef4a2009a1e00490e848851 256 Gene3D G3DSA:3.90.226.10 27 247 1.4E-35 T 14-10-2018 YP_1812 75bdb35d10919dfb13f918fab5ca9b2a 254 SMART SM00644 7 158 1.9E-29 T 14-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YP_1812 75bdb35d10919dfb13f918fab5ca9b2a 254 Gene3D G3DSA:1.10.101.10 173 254 4.0E-29 T 14-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 YP_1812 75bdb35d10919dfb13f918fab5ca9b2a 254 Gene3D G3DSA:3.40.80.10 17 172 1.3E-49 T 14-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YP_1812 75bdb35d10919dfb13f918fab5ca9b2a 254 SUPERFAMILY SSF47090 174 254 5.69E-22 T 14-10-2018 IPR036365 PGBD-like superfamily YP_1812 75bdb35d10919dfb13f918fab5ca9b2a 254 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 17 158 8.0E-22 T 14-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YP_1812 75bdb35d10919dfb13f918fab5ca9b2a 254 SUPERFAMILY SSF55846 9 174 1.09E-45 T 14-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YP_3772 96b518d1fb68545e7100c083eeb0c519 339 SUPERFAMILY SSF53822 26 339 1.08E-81 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_3772 96b518d1fb68545e7100c083eeb0c519 339 Gene3D G3DSA:3.40.50.2300 129 265 1.5E-109 T 14-10-2018 YP_3772 96b518d1fb68545e7100c083eeb0c519 339 Gene3D G3DSA:3.40.50.2300 29 299 1.5E-109 T 14-10-2018 YP_3772 96b518d1fb68545e7100c083eeb0c519 339 Pfam PF13407 Periplasmic binding protein domain 29 284 3.4E-53 T 14-10-2018 IPR025997 Periplasmic binding protein YP_0123 65d29456be7fba06f68c7e7737a98bb7 278 Pfam PF01694 Rhomboid family 132 271 3.0E-30 T 14-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 YP_0123 65d29456be7fba06f68c7e7737a98bb7 278 Hamap MF_01594 Rhomboid protease GlpG [glpG]. 1 275 48.352 T 14-10-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 YP_0123 65d29456be7fba06f68c7e7737a98bb7 278 Pfam PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease 1 84 2.3E-28 T 14-10-2018 IPR022732 Peptidase S54, GlpG peptidase, N-terminal GO:0004252|GO:0016021 YP_0123 65d29456be7fba06f68c7e7737a98bb7 278 SUPERFAMILY SSF144091 94 271 2.09E-43 T 14-10-2018 YP_0123 65d29456be7fba06f68c7e7737a98bb7 278 Gene3D G3DSA:3.30.70.2350 1 68 1.6E-21 T 14-10-2018 IPR038236 GlpG peptidase, N-terminal domain superfamily YP_0123 65d29456be7fba06f68c7e7737a98bb7 278 Gene3D G3DSA:1.20.1540.10 92 271 9.5E-60 T 14-10-2018 IPR035952 Rhomboid-like superfamily YP_0123 65d29456be7fba06f68c7e7737a98bb7 278 TIGRFAM TIGR04239 rhombo_GlpG: rhomboid family protease GlpG 4 271 4.7E-121 T 14-10-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 YP_0244 f151b14fb5936779bf5b47ff4944e129 190 SUPERFAMILY SSF55821 10 186 5.8E-54 T 14-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YP_0244 f151b14fb5936779bf5b47ff4944e129 190 Pfam PF01300 Telomere recombination 16 182 1.6E-42 T 14-10-2018 IPR006070 YrdC-like domain GO:0003725 YP_0244 f151b14fb5936779bf5b47ff4944e129 190 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 7 188 41.278 T 14-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 YP_0244 f151b14fb5936779bf5b47ff4944e129 190 Gene3D G3DSA:3.90.870.10 1 188 2.8E-61 T 14-10-2018 YP_3933 e24ca93572ce33481999488a3fc57e61 1513 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1299 1378 3.2E-25 T 14-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 YP_3933 e24ca93572ce33481999488a3fc57e61 1513 Pfam PF05488 PAAR motif 183 248 5.1E-16 T 14-10-2018 IPR008727 PAAR motif YP_3933 e24ca93572ce33481999488a3fc57e61 1513 Pfam PF05488 PAAR motif 156 212 1.7E-8 T 14-10-2018 IPR008727 PAAR motif YP_3933 e24ca93572ce33481999488a3fc57e61 1513 Gene3D G3DSA:3.90.930.1 592 757 9.6E-13 T 14-10-2018 YP_3933 e24ca93572ce33481999488a3fc57e61 1513 Gene3D G3DSA:2.60.200.60 170 257 2.7E-18 T 14-10-2018 YP_3933 e24ca93572ce33481999488a3fc57e61 1513 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 611 645 0.0035 T 14-10-2018 IPR006530 YD repeat YP_3933 e24ca93572ce33481999488a3fc57e61 1513 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 646 685 0.0024 T 14-10-2018 IPR006530 YD repeat YP_3933 e24ca93572ce33481999488a3fc57e61 1513 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 911 950 1.7E-8 T 14-10-2018 IPR006530 YD repeat YP_3933 e24ca93572ce33481999488a3fc57e61 1513 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1166 1196 1.0E-4 T 14-10-2018 IPR006530 YD repeat YP_3933 e24ca93572ce33481999488a3fc57e61 1513 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 841 881 1.4E-5 T 14-10-2018 IPR006530 YD repeat YP_3933 e24ca93572ce33481999488a3fc57e61 1513 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 819 859 9.3E-6 T 14-10-2018 IPR006530 YD repeat YP_3933 e24ca93572ce33481999488a3fc57e61 1513 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 625 665 5.1E-6 T 14-10-2018 IPR006530 YD repeat YP_3933 e24ca93572ce33481999488a3fc57e61 1513 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 777 815 5.0E-4 T 14-10-2018 IPR006530 YD repeat YP_3933 e24ca93572ce33481999488a3fc57e61 1513 Gene3D G3DSA:2.180.10.10 802 1085 6.5E-7 T 14-10-2018 YP_3933 e24ca93572ce33481999488a3fc57e61 1513 Gene3D G3DSA:2.180.10.10 1092 1378 2.4E-39 T 14-10-2018 YP_3933 e24ca93572ce33481999488a3fc57e61 1513 Pfam PF03527 RHS protein 1271 1303 2.2E-10 T 14-10-2018 IPR001826 RHS protein YP_3933 e24ca93572ce33481999488a3fc57e61 1513 Pfam PF05593 RHS Repeat 777 813 6.0E-5 T 14-10-2018 IPR031325 RHS repeat YP_3933 e24ca93572ce33481999488a3fc57e61 1513 Pfam PF05593 RHS Repeat 841 875 1.4E-5 T 14-10-2018 IPR031325 RHS repeat YP_3933 e24ca93572ce33481999488a3fc57e61 1513 Pfam PF05593 RHS Repeat 646 683 3.1E-6 T 14-10-2018 IPR031325 RHS repeat YP_3933 e24ca93572ce33481999488a3fc57e61 1513 Pfam PF05593 RHS Repeat 1141 1181 1.6E-5 T 14-10-2018 IPR031325 RHS repeat YP_3933 e24ca93572ce33481999488a3fc57e61 1513 Pfam PF05593 RHS Repeat 1166 1194 2.9E-5 T 14-10-2018 IPR031325 RHS repeat YP_0708 acc40e1a6bccb295fde929e959827058 152 SUPERFAMILY SSF53271 4 144 2.1E-31 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like YP_0708 acc40e1a6bccb295fde929e959827058 152 Gene3D G3DSA:3.40.50.2020 1 152 4.2E-43 T 14-10-2018 YP_0708 acc40e1a6bccb295fde929e959827058 152 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 1 152 40.845 T 14-10-2018 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 YP_0708 acc40e1a6bccb295fde929e959827058 152 Pfam PF00156 Phosphoribosyl transferase domain 11 145 1.6E-17 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 YP_1732 d16741b0b882e8d741ad380e2af2279f 180 Pfam PF16970 Type-1 fimbrial protein, A 55 180 3.1E-16 T 14-10-2018 IPR039458 Type-1 fimbrial protein, A YP_1732 d16741b0b882e8d741ad380e2af2279f 180 Gene3D G3DSA:2.60.40.1090 28 179 1.5E-32 T 14-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YP_1732 d16741b0b882e8d741ad380e2af2279f 180 SUPERFAMILY SSF49401 28 180 6.96E-26 T 14-10-2018 IPR008966 Adhesion domain superfamily YP_3399 a04e67fb803b3b3f76aa8f7ebe2bff6d 331 Gene3D G3DSA:3.40.50.2300 129 317 2.1E-122 T 14-10-2018 YP_3399 a04e67fb803b3b3f76aa8f7ebe2bff6d 331 TIGRFAM TIGR02634 xylF: D-xylose ABC transporter, D-xylose-binding protein 28 330 6.3E-163 T 14-10-2018 IPR013456 D-xylose ABC transporter, substrate-binding protein GO:0015753|GO:0048029 YP_3399 a04e67fb803b3b3f76aa8f7ebe2bff6d 331 SUPERFAMILY SSF53822 24 317 5.62E-70 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_3399 a04e67fb803b3b3f76aa8f7ebe2bff6d 331 Gene3D G3DSA:3.40.50.2300 29 305 2.1E-122 T 14-10-2018 YP_3399 a04e67fb803b3b3f76aa8f7ebe2bff6d 331 Pfam PF13407 Periplasmic binding protein domain 38 285 3.1E-60 T 14-10-2018 IPR025997 Periplasmic binding protein YP_3571 c0de60550fe545271f6fc39cefe0f162 512 Pfam PF06958 S-type Pyocin 269 408 1.9E-40 T 14-10-2018 IPR016128 Pyosin/cloacin translocation domain GO:0009405 YP_3571 c0de60550fe545271f6fc39cefe0f162 512 Pfam PF05488 PAAR motif 9 54 1.0E-8 T 14-10-2018 IPR008727 PAAR motif YP_3571 c0de60550fe545271f6fc39cefe0f162 512 SUPERFAMILY SSF69369 210 416 1.1E-24 T 14-10-2018 IPR036302 Pyosin/cloacin translocation domain superfamily GO:0009405 YP_3716 c88625a97d1e646e4330a22694f8c042 195 SUPERFAMILY SSF53218 3 187 3.4E-48 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily YP_3716 c88625a97d1e646e4330a22694f8c042 195 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 69 82 - T 14-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 YP_3716 c88625a97d1e646e4330a22694f8c042 195 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 4 146 4.1E-40 T 14-10-2018 IPR001453 MoaB/Mog domain YP_3716 c88625a97d1e646e4330a22694f8c042 195 Gene3D G3DSA:3.40.980.10 2 195 1.3E-64 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily YP_3716 c88625a97d1e646e4330a22694f8c042 195 SMART SM00852 7 153 8.1E-22 T 14-10-2018 IPR001453 MoaB/Mog domain YP_3716 c88625a97d1e646e4330a22694f8c042 195 Pfam PF00994 Probable molybdopterin binding domain 8 147 3.6E-28 T 14-10-2018 IPR001453 MoaB/Mog domain YP_3861 393274e5a13a081d017585abedafd4e2 232 SUPERFAMILY SSF53850 19 224 2.17E-40 T 14-10-2018 YP_3861 393274e5a13a081d017585abedafd4e2 232 Gene3D G3DSA:3.40.190.290 20 222 1.5E-53 T 14-10-2018 YP_3861 393274e5a13a081d017585abedafd4e2 232 Pfam PF03466 LysR substrate binding domain 18 221 2.1E-39 T 14-10-2018 IPR005119 LysR, substrate-binding YP_1351 01fdbbf28b5e62e98c7dd140f8c41e47 258 SUPERFAMILY SSF52096 3 248 1.76E-47 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YP_1351 01fdbbf28b5e62e98c7dd140f8c41e47 258 Gene3D G3DSA:3.90.226.10 1 232 2.1E-49 T 14-10-2018 YP_1351 01fdbbf28b5e62e98c7dd140f8c41e47 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 18 252 1.7E-47 T 14-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 YP_1351 01fdbbf28b5e62e98c7dd140f8c41e47 258 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 107 127 - T 14-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 YP_1677 7b58b6c318b32af80d18a8093c62b58e 207 PIRSF PIRSF006102 9 207 6.1E-56 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YP_1677 7b58b6c318b32af80d18a8093c62b58e 207 Pfam PF02508 Rnf-Nqr subunit, membrane protein 13 205 8.3E-52 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YP_1677 7b58b6c318b32af80d18a8093c62b58e 207 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 10 207 28.713 T 14-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 YP_1677 7b58b6c318b32af80d18a8093c62b58e 207 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 11 206 2.6E-102 T 14-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 YP_3805 dd248c99b5865a9937a582b0f5e9c349 191 SMART SM00749 129 190 3.1E-4 T 14-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria YP_3805 dd248c99b5865a9937a582b0f5e9c349 191 SMART SM00749 51 114 1.4E-8 T 14-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria YP_3805 dd248c99b5865a9937a582b0f5e9c349 191 Pfam PF04972 BON domain 46 114 2.0E-14 T 14-10-2018 IPR007055 BON domain YP_3805 dd248c99b5865a9937a582b0f5e9c349 191 Pfam PF04972 BON domain 125 190 6.1E-18 T 14-10-2018 IPR007055 BON domain YP_1890 a3a02630da9bb987339ce9861dfaac31 191 SUPERFAMILY SSF54593 4 180 2.02E-69 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YP_1890 a3a02630da9bb987339ce9861dfaac31 191 Gene3D G3DSA:3.10.180.10 2 185 1.5E-67 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YP_1890 a3a02630da9bb987339ce9861dfaac31 191 Pfam PF06185 YecM protein 10 180 2.9E-69 T 14-10-2018 IPR010393 Protein of unknown function DUF991 YP_2795 993945f867693e838b335f638b59232a 176 Gene3D G3DSA:3.10.129.10 5 148 3.7E-68 T 14-10-2018 YP_2795 993945f867693e838b335f638b59232a 176 SUPERFAMILY SSF54637 10 151 1.1E-50 T 14-10-2018 IPR029069 HotDog domain superfamily YP_2795 993945f867693e838b335f638b59232a 176 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 8 149 37.239 T 14-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YP_2795 993945f867693e838b335f638b59232a 176 Pfam PF07977 FabA-like domain 17 141 2.1E-40 T 14-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YP_2795 993945f867693e838b335f638b59232a 176 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 8 146 4.7E-60 T 14-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YP_2591 f6a178f48df086282e5dc9a49afe19ee 205 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2591 f6a178f48df086282e5dc9a49afe19ee 205 SUPERFAMILY SSF54862 1 199 1.15E-62 T 14-10-2018 YP_2591 f6a178f48df086282e5dc9a49afe19ee 205 TIGRFAM TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B 3 163 1.4E-77 T 14-10-2018 IPR014297 Dimethylsulphoxide reductase, chain B YP_2591 f6a178f48df086282e5dc9a49afe19ee 205 Gene3D G3DSA:3.30.70.20 1 199 1.0E-50 T 14-10-2018 YP_2591 f6a178f48df086282e5dc9a49afe19ee 205 Pfam PF12800 4Fe-4S binding domain 12 25 0.057 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2591 f6a178f48df086282e5dc9a49afe19ee 205 Pfam PF13247 4Fe-4S dicluster domain 58 153 2.1E-27 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_1070 3aa5f1a1f126068225091c11a2a216a6 106 PIRSF PIRSF028744 2 106 5.5E-43 T 14-10-2018 IPR014056 Addiction module killer protein, predicted YP_1070 3aa5f1a1f126068225091c11a2a216a6 106 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 29 90 5.2E-6 T 14-10-2018 IPR009241 Toxin HigB-like YP_1070 3aa5f1a1f126068225091c11a2a216a6 106 TIGRFAM TIGR02683 upstrm_HI1419: putative addiction module killer protein 13 103 4.2E-36 T 14-10-2018 IPR014056 Addiction module killer protein, predicted YP_0460 36e459cfbe5aec4ee2042e9ef9651a90 247 SUPERFAMILY SSF49584 165 239 3.79E-5 T 14-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YP_0460 36e459cfbe5aec4ee2042e9ef9651a90 247 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 47 158 4.9E-17 T 14-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YP_0460 36e459cfbe5aec4ee2042e9ef9651a90 247 Gene3D G3DSA:2.60.40.10 47 131 3.2E-8 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_0460 36e459cfbe5aec4ee2042e9ef9651a90 247 SUPERFAMILY SSF49354 43 157 6.98E-16 T 14-10-2018 IPR008962 PapD-like superfamily YP_1497 d0c8f130e0ff2a438c6f8eb0b2e47154 296 SUPERFAMILY SSF52540 4 249 4.78E-80 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1497 d0c8f130e0ff2a438c6f8eb0b2e47154 296 Gene3D G3DSA:3.40.50.300 4 228 8.2E-60 T 14-10-2018 YP_1497 d0c8f130e0ff2a438c6f8eb0b2e47154 296 SMART SM00382 28 211 1.0E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1497 d0c8f130e0ff2a438c6f8eb0b2e47154 296 Gene3D G3DSA:2.40.50.940 229 286 5.4E-14 T 14-10-2018 YP_1497 d0c8f130e0ff2a438c6f8eb0b2e47154 296 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1497 d0c8f130e0ff2a438c6f8eb0b2e47154 296 Pfam PF00005 ABC transporter 20 161 5.2E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1561 53e9298673dc6aa5f893f54ed4d221e1 123 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 52 68 5.3E-17 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YP_1561 53e9298673dc6aa5f893f54ed4d221e1 123 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 108 121 5.3E-17 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YP_1561 53e9298673dc6aa5f893f54ed4d221e1 123 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 87 103 5.3E-17 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YP_1561 53e9298673dc6aa5f893f54ed4d221e1 123 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 22 122 1.2E-25 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YP_1561 53e9298673dc6aa5f893f54ed4d221e1 123 Pfam PF02049 Flagellar hook-basal body complex protein FliE 39 123 5.2E-26 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YP_1561 53e9298673dc6aa5f893f54ed4d221e1 123 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 24 123 17.929 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YP_4025 ec118a2f9e3574a13bbab437992e5549 609 SUPERFAMILY SSF56235 2 233 7.98E-75 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YP_4025 ec118a2f9e3574a13bbab437992e5549 609 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 609 40.997 T 14-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 YP_4025 ec118a2f9e3574a13bbab437992e5549 609 SUPERFAMILY SSF53697 245 609 9.39E-113 T 14-10-2018 YP_4025 ec118a2f9e3574a13bbab437992e5549 609 Pfam PF13522 Glutamine amidotransferase domain 65 184 3.7E-21 T 14-10-2018 YP_4025 ec118a2f9e3574a13bbab437992e5549 609 Pfam PF01380 SIS domain 289 417 1.9E-33 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YP_4025 ec118a2f9e3574a13bbab437992e5549 609 Pfam PF01380 SIS domain 462 591 1.6E-28 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YP_4025 ec118a2f9e3574a13bbab437992e5549 609 Gene3D G3DSA:3.40.50.10490 447 594 1.9E-153 T 14-10-2018 YP_4025 ec118a2f9e3574a13bbab437992e5549 609 Gene3D G3DSA:3.60.20.10 2 241 2.9E-82 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YP_4025 ec118a2f9e3574a13bbab437992e5549 609 Gene3D G3DSA:3.40.50.10490 249 608 1.9E-153 T 14-10-2018 YP_4025 ec118a2f9e3574a13bbab437992e5549 609 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 609 1.6E-263 T 14-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 YP_3332 01f689418ca30310758e98ae3acb14d6 120 Hamap MF_01088 Universal stress protein B [uspB]. 10 116 36.471 T 14-10-2018 IPR019598 Universal stress protein B YP_3332 01f689418ca30310758e98ae3acb14d6 120 Pfam PF10625 Universal stress protein B (UspB) 10 115 1.4E-53 T 14-10-2018 IPR019598 Universal stress protein B YP_2660 86b3592f42fb34349ed11afe1a5beb52 133 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 20 126 7.6E-46 T 14-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB YP_2660 86b3592f42fb34349ed11afe1a5beb52 133 PIRSF PIRSF006105 1 133 4.7E-51 T 14-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB YP_2660 86b3592f42fb34349ed11afe1a5beb52 133 SUPERFAMILY SSF48695 32 128 4.64E-41 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily YP_2660 86b3592f42fb34349ed11afe1a5beb52 133 Gene3D G3DSA:1.10.1130.10 46 113 6.9E-29 T 14-10-2018 YP_3103 037052f7cd2a289264f8e98ea7fb5949 229 SUPERFAMILY SSF51391 18 221 2.49E-63 T 14-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 YP_3103 037052f7cd2a289264f8e98ea7fb5949 229 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 36 216 2.1E-56 T 14-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 YP_3103 037052f7cd2a289264f8e98ea7fb5949 229 Pfam PF02581 Thiamine monophosphate synthase 35 203 6.3E-55 T 14-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 YP_3103 037052f7cd2a289264f8e98ea7fb5949 229 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 10 221 20.001 T 14-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 YP_3103 037052f7cd2a289264f8e98ea7fb5949 229 Gene3D G3DSA:3.20.20.70 20 223 1.1E-60 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_0756 16a7a5e18481456b4f33a6afc3da9925 98 PIRSF PIRSF006488 11 98 7.3E-24 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 YP_0756 16a7a5e18481456b4f33a6afc3da9925 98 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 28 83 7.3E-23 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 YP_0756 16a7a5e18481456b4f33a6afc3da9925 98 Pfam PF02609 Exonuclease VII small subunit 29 80 4.7E-20 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 YP_0756 16a7a5e18481456b4f33a6afc3da9925 98 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 28 70 3.0E-17 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 YP_0756 16a7a5e18481456b4f33a6afc3da9925 98 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 28 88 16.129 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 YP_0756 16a7a5e18481456b4f33a6afc3da9925 98 Gene3D G3DSA:1.10.287.1040 23 98 4.7E-25 T 14-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 YP_0756 16a7a5e18481456b4f33a6afc3da9925 98 SUPERFAMILY SSF116842 23 89 7.98E-21 T 14-10-2018 YP_1636 1ee267dbebcf429d562b8552261c37fd 295 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 24 293 6.5E-112 T 14-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 YP_1636 1ee267dbebcf429d562b8552261c37fd 295 TIGRFAM TIGR00828 EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component 23 293 1.2E-142 T 14-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 YP_3762 b47a6efea8697c3824d284965f5c77c0 77 Pfam PF06305 Lipopolysaccharide assembly protein A domain 22 71 3.1E-8 T 14-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 YP_2102 3137afbf4b55322eaeb6880c8f056c89 192 Pfam PF04264 YceI-like domain 26 187 3.7E-40 T 14-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like YP_2102 3137afbf4b55322eaeb6880c8f056c89 192 SMART SM00867 25 189 1.9E-70 T 14-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like YP_2102 3137afbf4b55322eaeb6880c8f056c89 192 SUPERFAMILY SSF101874 23 189 7.32E-56 T 14-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily YP_2102 3137afbf4b55322eaeb6880c8f056c89 192 Gene3D G3DSA:2.40.128.110 24 191 9.1E-56 T 14-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily YP_2102 3137afbf4b55322eaeb6880c8f056c89 192 Hamap MF_00780 Protein YceI [yceI]. 2 192 45.01 T 14-10-2018 IPR023480 Uncharacterised protein family UPF0312/YceI YP_0280 762ff53bf9e81eb677881798a57551e5 256 Pfam PF01061 ABC-2 type transporter 9 218 2.4E-37 T 14-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 YP_0280 762ff53bf9e81eb677881798a57551e5 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 176 195 1.7E-6 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 YP_0280 762ff53bf9e81eb677881798a57551e5 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 196 215 1.7E-6 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 YP_0280 762ff53bf9e81eb677881798a57551e5 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 58 80 1.7E-6 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 YP_0280 762ff53bf9e81eb677881798a57551e5 256 PIRSF PIRSF006648 8 253 2.1E-24 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 YP_1038 2f696790d3cdacbcdfe1693bedd7f85b 379 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 362 4.3E-109 T 14-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 YP_1038 2f696790d3cdacbcdfe1693bedd7f85b 379 PIRSF PIRSF000267 2 378 9.0E-130 T 14-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 YP_1038 2f696790d3cdacbcdfe1693bedd7f85b 379 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 379 8.5E-192 T 14-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 YP_0727 3801e945e847134c23592d4fab389b29 239 SMART SM00862 160 235 3.2E-27 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_0727 3801e945e847134c23592d4fab389b29 239 SMART SM00448 13 126 1.3E-44 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0727 3801e945e847134c23592d4fab389b29 239 SUPERFAMILY SSF46894 139 236 4.25E-32 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_0727 3801e945e847134c23592d4fab389b29 239 Gene3D G3DSA:1.10.10.10 138 239 8.8E-42 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0727 3801e945e847134c23592d4fab389b29 239 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 11 236 2.4E-114 T 14-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 YP_0727 3801e945e847134c23592d4fab389b29 239 SUPERFAMILY SSF52172 9 136 2.85E-43 T 14-10-2018 IPR011006 CheY-like superfamily YP_0727 3801e945e847134c23592d4fab389b29 239 Pfam PF00072 Response regulator receiver domain 15 127 1.1E-27 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_0727 3801e945e847134c23592d4fab389b29 239 Gene3D G3DSA:3.40.50.2300 8 137 9.2E-38 T 14-10-2018 YP_0727 3801e945e847134c23592d4fab389b29 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 161 235 2.4E-28 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_3666 bb309e21f74b50ca2dfa827cd7216d04 457 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 11 453 2.2E-138 T 14-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YP_3666 bb309e21f74b50ca2dfa827cd7216d04 457 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 25 450 5.5E-118 T 14-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YP_1317 d6e87075e7b2d148bdc5cdb12b33ef57 366 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 153 360 8.8E-39 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1317 d6e87075e7b2d148bdc5cdb12b33ef57 366 Gene3D G3DSA:1.10.3720.10 123 355 4.8E-18 T 14-10-2018 IPR035906 MetI-like superfamily YP_1317 d6e87075e7b2d148bdc5cdb12b33ef57 366 SUPERFAMILY SSF161098 130 346 6.67E-15 T 14-10-2018 IPR035906 MetI-like superfamily YP_3200 1237a6c5275b3ea4a9c09825a1d741c9 108 ProSitePatterns PS01344 Frataxin family signature. 52 66 - T 14-10-2018 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YP_3200 1237a6c5275b3ea4a9c09825a1d741c9 108 Hamap MF_00142 Iron-sulfur cluster assembly protein CyaY [cyaY]. 3 107 29.174 T 14-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YP_3200 1237a6c5275b3ea4a9c09825a1d741c9 108 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 4 107 5.8E-43 T 14-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YP_3200 1237a6c5275b3ea4a9c09825a1d741c9 108 SMART SM01219 3 108 2.4E-55 T 14-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YP_3200 1237a6c5275b3ea4a9c09825a1d741c9 108 Pfam PF01491 Frataxin-like domain 3 104 1.4E-28 T 14-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YP_3200 1237a6c5275b3ea4a9c09825a1d741c9 108 Gene3D G3DSA:3.30.920.10 1 108 4.9E-42 T 14-10-2018 IPR036524 Frataxin/CyaY superfamily GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YP_3200 1237a6c5275b3ea4a9c09825a1d741c9 108 SUPERFAMILY SSF55387 3 107 2.09E-39 T 14-10-2018 YP_2960 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 2.8E-17 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2960 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 2.8E-17 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2960 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 2.8E-17 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2960 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 2.8E-17 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2960 e0f63aa874b218a4c9d359851efe3e90 71 Pfam PF01165 Ribosomal protein S21 4 56 6.3E-22 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2960 e0f63aa874b218a4c9d359851efe3e90 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 14-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_2960 e0f63aa874b218a4c9d359851efe3e90 71 Gene3D G3DSA:1.20.5.1150 16 54 2.1E-21 T 14-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2960 e0f63aa874b218a4c9d359851efe3e90 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 56 1.0E-15 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2960 e0f63aa874b218a4c9d359851efe3e90 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 4.1E-24 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2960 e0f63aa874b218a4c9d359851efe3e90 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.283 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2728 d25aaffce599d550943a89e017d1b122 402 Pfam PF00872 Transposase, Mutator family 12 377 5.6E-115 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_2728 d25aaffce599d550943a89e017d1b122 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_2396 662456e44ebe04e55fff8cc17158ef78 356 Pfam PF01039 Carboxyl transferase domain 147 291 1.2E-17 T 14-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 YP_2396 662456e44ebe04e55fff8cc17158ef78 356 Gene3D G3DSA:3.90.226.10 77 339 9.1E-88 T 14-10-2018 YP_2396 662456e44ebe04e55fff8cc17158ef78 356 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 281 292 3.0E-36 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YP_2396 662456e44ebe04e55fff8cc17158ef78 356 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 303 312 3.0E-36 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YP_2396 662456e44ebe04e55fff8cc17158ef78 356 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 252 269 3.0E-36 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YP_2396 662456e44ebe04e55fff8cc17158ef78 356 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 181 195 3.0E-36 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YP_2396 662456e44ebe04e55fff8cc17158ef78 356 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 215 233 3.0E-36 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YP_2396 662456e44ebe04e55fff8cc17158ef78 356 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 53 336 6.5E-148 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YP_2396 662456e44ebe04e55fff8cc17158ef78 356 SUPERFAMILY SSF52096 77 335 8.08E-87 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YP_2396 662456e44ebe04e55fff8cc17158ef78 356 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 53 333 38.356 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YP_3647 8d1878cb1b63cfd5593e711c67280da2 174 Pfam PF10369 Small subunit of acetolactate synthase 95 169 1.4E-23 T 14-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 YP_3647 8d1878cb1b63cfd5593e711c67280da2 174 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 12 87 8.0E-37 T 14-10-2018 YP_3647 8d1878cb1b63cfd5593e711c67280da2 174 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 13 170 8.1E-66 T 14-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 YP_3647 8d1878cb1b63cfd5593e711c67280da2 174 Pfam PF01842 ACT domain 15 79 8.1E-15 T 14-10-2018 IPR002912 ACT domain YP_3647 8d1878cb1b63cfd5593e711c67280da2 174 Gene3D G3DSA:3.30.70.1150 91 168 6.6E-27 T 14-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal YP_3647 8d1878cb1b63cfd5593e711c67280da2 174 Gene3D G3DSA:3.30.70.260 11 90 1.4E-34 T 14-10-2018 YP_3647 8d1878cb1b63cfd5593e711c67280da2 174 SUPERFAMILY SSF55021 13 85 1.32E-21 T 14-10-2018 YP_3647 8d1878cb1b63cfd5593e711c67280da2 174 SUPERFAMILY SSF55021 90 173 1.47E-25 T 14-10-2018 YP_3608 f848318234109885c5c36c9ff7efde8d 192 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 18 165 7.9E-11 T 14-10-2018 IPR011978 Uncharacterised protein family UPF0149 YP_3608 f848318234109885c5c36c9ff7efde8d 192 Hamap MF_00346 UPF0149 protein YgfB [ygfB]. 6 190 37.498 T 14-10-2018 IPR011978 Uncharacterised protein family UPF0149 YP_3608 f848318234109885c5c36c9ff7efde8d 192 Pfam PF03695 Uncharacterised protein family (UPF0149) 14 177 7.3E-36 T 14-10-2018 IPR011978 Uncharacterised protein family UPF0149 YP_3608 f848318234109885c5c36c9ff7efde8d 192 Gene3D G3DSA:1.20.120.740 5 192 1.8E-57 T 14-10-2018 YP_3608 f848318234109885c5c36c9ff7efde8d 192 SUPERFAMILY SSF101327 8 176 4.97E-51 T 14-10-2018 IPR036255 YgfB-like superfamily YP_0003 e1ec9ebe0faf7db5dcbcf5e37e00572f 330 Hamap MF_00555 Aspartate--ammonia ligase [asnA]. 1 330 45.724 T 14-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 YP_0003 e1ec9ebe0faf7db5dcbcf5e37e00572f 330 TIGRFAM TIGR00669 asnA: aspartate--ammonia ligase 1 330 1.4E-184 T 14-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 YP_0003 e1ec9ebe0faf7db5dcbcf5e37e00572f 330 PIRSF PIRSF001555 1 329 4.1E-156 T 14-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 YP_0003 e1ec9ebe0faf7db5dcbcf5e37e00572f 330 Pfam PF03590 Aspartate-ammonia ligase 9 244 2.5E-94 T 14-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 YP_0003 e1ec9ebe0faf7db5dcbcf5e37e00572f 330 SUPERFAMILY SSF55681 5 328 7.46E-99 T 14-10-2018 YP_0003 e1ec9ebe0faf7db5dcbcf5e37e00572f 330 Gene3D G3DSA:3.30.930.10 1 330 4.3E-144 T 14-10-2018 YP_3994 916c25258aaaaf89ccfadd591a81b5e2 137 Gene3D G3DSA:2.60.40.790 33 137 2.1E-19 T 14-10-2018 IPR008978 HSP20-like chaperone YP_3994 916c25258aaaaf89ccfadd591a81b5e2 137 SUPERFAMILY SSF49764 30 137 9.77E-20 T 14-10-2018 IPR008978 HSP20-like chaperone YP_3994 916c25258aaaaf89ccfadd591a81b5e2 137 Hamap MF_02000 Small heat shock protein IbpA [ibpA]. 1 137 44.274 T 14-10-2018 IPR023728 Small heat shock protein IbpA YP_3994 916c25258aaaaf89ccfadd591a81b5e2 137 Pfam PF00011 Hsp20/alpha crystallin family 42 137 5.6E-21 T 14-10-2018 IPR002068 Alpha crystallin/Hsp20 domain YP_2103 2ee67b904335fd0083de1a4006d72078 184 Pfam PF01292 Prokaryotic cytochrome b561 11 180 5.5E-25 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 YP_2103 2ee67b904335fd0083de1a4006d72078 184 SUPERFAMILY SSF81342 5 180 4.87E-37 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 YP_3610 6e894ca5335473e5e96e3d5e4d401b3e 198 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 11 192 1.0E-56 T 14-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase YP_3610 6e894ca5335473e5e96e3d5e4d401b3e 198 SUPERFAMILY SSF100950 10 198 7.39E-59 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_3610 6e894ca5335473e5e96e3d5e4d401b3e 198 Gene3D G3DSA:3.40.50.10420 3 197 4.8E-59 T 14-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily YP_3610 6e894ca5335473e5e96e3d5e4d401b3e 198 PIRSF PIRSF006806 7 195 3.6E-42 T 14-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase YP_3610 6e894ca5335473e5e96e3d5e4d401b3e 198 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 12 192 2.5E-52 T 14-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase YP_3967 1bcabcfceff15781d554e34b16605c43 309 Gene3D G3DSA:3.90.1670.10 26 309 9.3E-92 T 14-10-2018 IPR024064 FdhE-like superfamily YP_3967 1bcabcfceff15781d554e34b16605c43 309 SUPERFAMILY SSF144020 26 308 2.62E-95 T 14-10-2018 IPR024064 FdhE-like superfamily YP_3967 1bcabcfceff15781d554e34b16605c43 309 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 2 307 1.7E-120 T 14-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 YP_3967 1bcabcfceff15781d554e34b16605c43 309 Hamap MF_00611 Protein FdhE [fdhE]. 3 308 50.121 T 14-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 YP_3967 1bcabcfceff15781d554e34b16605c43 309 PIRSF PIRSF018296 1 309 1.3E-135 T 14-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 YP_3967 1bcabcfceff15781d554e34b16605c43 309 Pfam PF04216 Protein involved in formate dehydrogenase formation 23 306 3.4E-114 T 14-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 YP_1018 11e4272fd411def050e226c3dafad133 518 SUPERFAMILY SSF52540 46 247 1.12E-34 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1018 11e4272fd411def050e226c3dafad133 518 Gene3D G3DSA:3.40.50.300 267 511 4.3E-49 T 14-10-2018 YP_1018 11e4272fd411def050e226c3dafad133 518 SUPERFAMILY SSF52540 272 503 2.66E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1018 11e4272fd411def050e226c3dafad133 518 SMART SM00382 50 260 5.3E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1018 11e4272fd411def050e226c3dafad133 518 SMART SM00382 307 501 3.7E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1018 11e4272fd411def050e226c3dafad133 518 Gene3D G3DSA:3.40.50.300 27 248 1.2E-35 T 14-10-2018 YP_1018 11e4272fd411def050e226c3dafad133 518 Pfam PF00005 ABC transporter 46 185 4.7E-18 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1018 11e4272fd411def050e226c3dafad133 518 Pfam PF00005 ABC transporter 298 451 1.2E-26 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1348 ec84f4f763f08077cac2b333c3323c69 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 158 1.1E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1348 ec84f4f763f08077cac2b333c3323c69 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 1.1E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1348 ec84f4f763f08077cac2b333c3323c69 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 97 108 1.1E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1348 ec84f4f763f08077cac2b333c3323c69 263 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 156 184 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YP_1348 ec84f4f763f08077cac2b333c3323c69 263 Gene3D G3DSA:3.40.50.720 18 261 2.7E-66 T 14-10-2018 YP_1348 ec84f4f763f08077cac2b333c3323c69 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 25 259 3.0E-54 T 14-10-2018 YP_1348 ec84f4f763f08077cac2b333c3323c69 263 SUPERFAMILY SSF51735 18 261 4.29E-64 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1348 ec84f4f763f08077cac2b333c3323c69 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 20 37 1.6E-35 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1348 ec84f4f763f08077cac2b333c3323c69 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 190 207 1.6E-35 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1348 ec84f4f763f08077cac2b333c3323c69 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 160 1.6E-35 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1348 ec84f4f763f08077cac2b333c3323c69 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 1.6E-35 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1348 ec84f4f763f08077cac2b333c3323c69 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 97 108 1.6E-35 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1348 ec84f4f763f08077cac2b333c3323c69 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 1.6E-35 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_2890 6615b680e0a1bfd4a8d08bebaa96faec 101 Pfam PF05957 Bacterial protein of unknown function (DUF883) 9 101 5.0E-32 T 14-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 YP_0714 f5df99447dd6ee3308344118b7a1df48 252 Pfam PF07317 Flagellar regulator YcgR 12 115 1.4E-30 T 14-10-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal YP_0714 f5df99447dd6ee3308344118b7a1df48 252 Hamap MF_01457 Flagellar brake protein YcgR [ycgR]. 7 245 29.808 T 14-10-2018 IPR023787 Type III secretion system flagellar brake protein YcgR GO:0035438|GO:0071945 YP_0714 f5df99447dd6ee3308344118b7a1df48 252 Gene3D G3DSA:2.30.110.10 10 118 2.3E-6 T 14-10-2018 IPR012349 FMN-binding split barrel GO:0048037 YP_0714 f5df99447dd6ee3308344118b7a1df48 252 Gene3D G3DSA:2.40.10.220 120 247 3.3E-34 T 14-10-2018 YP_0714 f5df99447dd6ee3308344118b7a1df48 252 Pfam PF07238 PilZ domain 118 236 3.0E-11 T 14-10-2018 IPR009875 PilZ domain GO:0035438 YP_0509 21728fdae55c41f24a5710390c70273f 342 PIRSF PIRSF004911 3 342 2.5E-117 T 14-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase YP_0509 21728fdae55c41f24a5710390c70273f 342 Gene3D G3DSA:3.20.20.70 51 334 3.5E-90 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_0509 21728fdae55c41f24a5710390c70273f 342 Pfam PF04055 Radical SAM superfamily 118 199 1.9E-8 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YP_0509 21728fdae55c41f24a5710390c70273f 342 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 15 335 8.2E-157 T 14-10-2018 IPR022462 Lysine-2,3-aminomutase-like YP_0509 21728fdae55c41f24a5710390c70273f 342 Pfam PF13353 4Fe-4S single cluster domain 111 182 3.8E-6 T 14-10-2018 YP_0509 21728fdae55c41f24a5710390c70273f 342 SUPERFAMILY SSF102114 102 324 8.5E-26 T 14-10-2018 YP_0509 21728fdae55c41f24a5710390c70273f 342 TIGRFAM TIGR00238 TIGR00238: KamA family protein 4 328 1.2E-132 T 14-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase YP_2661 3987fa0b633faf259b085cf1f981d82a 830 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 2 828 0.0 T 14-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 YP_2661 3987fa0b633faf259b085cf1f981d82a 830 Gene3D G3DSA:3.40.50.740 96 623 0.0 T 14-10-2018 YP_2661 3987fa0b633faf259b085cf1f981d82a 830 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 39 92 1.1E-17 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2661 3987fa0b633faf259b085cf1f981d82a 830 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 23 1.5E-4 T 14-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YP_2661 3987fa0b633faf259b085cf1f981d82a 830 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 44 61 - T 14-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 YP_2661 3987fa0b633faf259b085cf1f981d82a 830 SUPERFAMILY SSF53706 37 700 3.27E-201 T 14-10-2018 YP_2661 3987fa0b633faf259b085cf1f981d82a 830 Pfam PF01568 Molydopterin dinucleotide binding domain 714 822 1.4E-24 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 YP_2661 3987fa0b633faf259b085cf1f981d82a 830 SUPERFAMILY SSF50692 688 828 3.62E-42 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily YP_2661 3987fa0b633faf259b085cf1f981d82a 830 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 1 828 32.325 T 14-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 YP_2661 3987fa0b633faf259b085cf1f981d82a 830 Pfam PF00384 Molybdopterin oxidoreductase 96 568 8.0E-89 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2661 3987fa0b633faf259b085cf1f981d82a 830 SMART SM00926 39 93 1.2E-15 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2661 3987fa0b633faf259b085cf1f981d82a 830 Gene3D G3DSA:2.40.40.20 704 828 1.8E-48 T 14-10-2018 YP_2661 3987fa0b633faf259b085cf1f981d82a 830 Gene3D G3DSA:3.40.228.10 175 703 0.0 T 14-10-2018 YP_2661 3987fa0b633faf259b085cf1f981d82a 830 Gene3D G3DSA:3.30.200.210 39 666 0.0 T 14-10-2018 YP_2661 3987fa0b633faf259b085cf1f981d82a 830 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 2 24 2.1E-6 T 14-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YP_pMT048 6de82a23449f4b646e1e947acb094659 189 Gene3D G3DSA:3.30.420.10 5 182 1.0E-17 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_pMT048 6de82a23449f4b646e1e947acb094659 189 SUPERFAMILY SSF53098 6 140 3.11E-5 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_pCRY27 bded8886f211040bd3eb945e39f5a5b9 215 SUPERFAMILY SSF52540 4 191 5.62E-23 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pCRY27 bded8886f211040bd3eb945e39f5a5b9 215 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 185 2.5E-8 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain YP_pCRY27 bded8886f211040bd3eb945e39f5a5b9 215 Gene3D G3DSA:3.40.50.300 3 214 2.5E-26 T 14-10-2018 YP_3675 5727413f39c42f5b20ae356ed4a53c49 614 PIRSF PIRSF028304 2 614 1.5E-179 T 14-10-2018 IPR010272 Type VI secretion system, TssF-like YP_3675 5727413f39c42f5b20ae356ed4a53c49 614 Pfam PF05947 Type VI secretion system, TssF 8 610 8.5E-138 T 14-10-2018 IPR010272 Type VI secretion system, TssF-like YP_3675 5727413f39c42f5b20ae356ed4a53c49 614 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 6 609 1.7E-109 T 14-10-2018 IPR010272 Type VI secretion system, TssF-like YP_2574 c8370417cda604aa709d188bb849b7d3 626 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 625 1.3E-196 T 14-10-2018 IPR010272 Type VI secretion system, TssF-like YP_2574 c8370417cda604aa709d188bb849b7d3 626 Pfam PF05947 Type VI secretion system, TssF 6 623 1.2E-200 T 14-10-2018 IPR010272 Type VI secretion system, TssF-like YP_2574 c8370417cda604aa709d188bb849b7d3 626 PIRSF PIRSF028304 1 626 3.5E-157 T 14-10-2018 IPR010272 Type VI secretion system, TssF-like YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 Pfam PF02096 60Kd inner membrane protein 353 532 1.8E-60 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 Pfam PF14849 YidC periplasmic domain 61 342 9.4E-90 T 14-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR01900 YidC translocation/secretion protein signature 487 511 1.5E-29 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR01900 YidC translocation/secretion protein signature 338 354 1.5E-29 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR01900 YidC translocation/secretion protein signature 467 482 1.5E-29 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 Gene3D G3DSA:2.70.98.90 56 332 8.4E-109 T 14-10-2018 IPR038221 YidC, periplasmic domain superfamily YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 352 532 1.5E-69 T 14-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 351 2.0E-120 T 14-10-2018 IPR028053 Membrane insertase YidC, N-terminal YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 534 26.628 T 14-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 414 437 1.3E-105 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 217 235 1.3E-105 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 498 521 1.3E-105 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 250 265 1.3E-105 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 2 23 1.3E-105 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 158 178 1.3E-105 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 323 343 1.3E-105 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 461 483 1.3E-105 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YP_4009 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 66 87 1.3E-105 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YP_1240 fd244d5826dec5e8b17c10cba6cdfb1a 496 Pfam PF13460 NAD(P)H-binding 10 154 3.1E-11 T 14-10-2018 IPR016040 NAD(P)-binding domain YP_1240 fd244d5826dec5e8b17c10cba6cdfb1a 496 SUPERFAMILY SSF51735 1 301 3.98E-44 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1240 fd244d5826dec5e8b17c10cba6cdfb1a 496 Pfam PF11066 Protein of unknown function (DUF2867) 340 469 1.0E-12 T 14-10-2018 IPR021295 Protein of unknown function DUF2867 YP_1240 fd244d5826dec5e8b17c10cba6cdfb1a 496 Gene3D G3DSA:3.40.50.720 5 305 2.2E-32 T 14-10-2018 YP_1536 afed65161b54c99d193c8bf1aa666876 204 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 6 204 45.913 T 14-10-2018 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 YP_1536 afed65161b54c99d193c8bf1aa666876 204 Gene3D G3DSA:3.40.50.360 4 204 1.5E-77 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_1536 afed65161b54c99d193c8bf1aa666876 204 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 7 202 1.8E-98 T 14-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 YP_1536 afed65161b54c99d193c8bf1aa666876 204 SUPERFAMILY SSF52218 6 203 7.34E-61 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_1536 afed65161b54c99d193c8bf1aa666876 204 Pfam PF03358 NADPH-dependent FMN reductase 18 147 2.7E-12 T 14-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 YP_0275 d78ad99971c4ede6f7eea960215e33e4 115 Gene3D G3DSA:1.20.58.1630 23 114 3.6E-10 T 14-10-2018 IPR038432 PulS/OutS-like superfamily YP_0275 d78ad99971c4ede6f7eea960215e33e4 115 ProDom PD074041 YACC EXPORTED PRECURSOR SIGNAL PERIPLASMIC Y0776 SIMILAR ECS0126 STY0189 ESCHERICHIA 35 113 2.0E-42 T 14-10-2018 YP_0275 d78ad99971c4ede6f7eea960215e33e4 115 Pfam PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) 24 106 3.2E-9 T 14-10-2018 IPR019114 Chaperone lipoprotein, PulS/OutS-like YP_2772 6c71531046d9384ca6d03144ab125465 260 SUPERFAMILY SSF56219 43 258 3.66E-25 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YP_2772 6c71531046d9384ca6d03144ab125465 260 Gene3D G3DSA:3.60.10.10 42 260 2.2E-18 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YP_2772 6c71531046d9384ca6d03144ab125465 260 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 167 251 1.4E-7 T 14-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 309 1.6E-58 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 286 1.0E-23 T 14-10-2018 YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 237 253 1.0E-23 T 14-10-2018 YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.0E-23 T 14-10-2018 YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 1.0E-23 T 14-10-2018 YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 155 173 1.0E-23 T 14-10-2018 YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 Pfam PF00581 Rhodanese-like domain 460 543 2.0E-12 T 14-10-2018 IPR001763 Rhodanese-like domain YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 SUPERFAMILY SSF55424 325 447 1.36E-30 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 SUPERFAMILY SSF51905 2 319 1.2E-40 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 2.0E-17 T 14-10-2018 YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 238 252 2.0E-17 T 14-10-2018 YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 279 286 2.0E-17 T 14-10-2018 YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 180 2.0E-17 T 14-10-2018 YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 389 404 2.0E-17 T 14-10-2018 YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 SMART SM00450 453 548 8.8E-17 T 14-10-2018 IPR001763 Rhodanese-like domain YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 Gene3D G3DSA:3.50.50.60 5 342 7.4E-176 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 332 434 3.8E-12 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 Gene3D G3DSA:3.50.50.60 116 442 7.4E-176 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 SUPERFAMILY SSF52821 432 543 3.4E-26 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily YP_2626 484b9a6f7dc7e23f17a909b45793fd51 548 Gene3D G3DSA:3.40.250.10 454 547 1.5E-23 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily YP_0761 acb1409031e0b09139cdc431cd3a7508 183 Gene3D G3DSA:3.30.70.860 118 183 9.0E-32 T 14-10-2018 IPR035571 UPF0234-like, C-terminal YP_0761 acb1409031e0b09139cdc431cd3a7508 183 Gene3D G3DSA:3.30.70.990 29 117 2.4E-32 T 14-10-2018 IPR035570 UPF0234, N-terminal YP_0761 acb1409031e0b09139cdc431cd3a7508 183 SUPERFAMILY SSF89963 111 183 4.19E-29 T 14-10-2018 IPR036183 YajQ-like superfamily YP_0761 acb1409031e0b09139cdc431cd3a7508 183 SUPERFAMILY SSF89963 22 109 1.92E-30 T 14-10-2018 IPR036183 YajQ-like superfamily YP_0761 acb1409031e0b09139cdc431cd3a7508 183 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 21 183 30.101 T 14-10-2018 IPR007551 Protein of unknown function DUF520 YP_0761 acb1409031e0b09139cdc431cd3a7508 183 Pfam PF04461 Protein of unknown function (DUF520) 22 182 2.4E-65 T 14-10-2018 IPR007551 Protein of unknown function DUF520 YP_3262 0e91e8dcab5a266ccb07318fb66cb754 290 Pfam PF01738 Dienelactone hydrolase family 56 278 1.0E-75 T 14-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 YP_3262 0e91e8dcab5a266ccb07318fb66cb754 290 SUPERFAMILY SSF53474 45 278 3.84E-50 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_3262 0e91e8dcab5a266ccb07318fb66cb754 290 Gene3D G3DSA:3.40.50.1820 40 278 4.9E-75 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1883 3064cf68c32a45a94dde160a991419fd 401 Hamap MF_01529 Multidrug resistance protein MdtH [mdtH]. 1 401 40.633 T 14-10-2018 IPR022855 Multidrug resistance protein MdtH YP_1883 3064cf68c32a45a94dde160a991419fd 401 Pfam PF07690 Major Facilitator Superfamily 20 234 3.3E-23 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_1883 3064cf68c32a45a94dde160a991419fd 401 Gene3D G3DSA:1.20.1250.20 13 386 1.2E-47 T 14-10-2018 YP_1883 3064cf68c32a45a94dde160a991419fd 401 SUPERFAMILY SSF103473 14 392 7.19E-53 T 14-10-2018 IPR036259 MFS transporter superfamily YP_3794 a39f87350bd17e55b0bba932fe85a3ce 687 SMART SM00382 227 532 1.0E-4 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3794 a39f87350bd17e55b0bba932fe85a3ce 687 Pfam PF07728 AAA domain (dynein-related subfamily) 433 522 3.4E-9 T 14-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 YP_3794 a39f87350bd17e55b0bba932fe85a3ce 687 SUPERFAMILY SSF52540 227 530 6.85E-13 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0947 0e08d5d468a7ff9f514ec66b19eed55a 358 Pfam PF02653 Branched-chain amino acid transport system / permease component 50 340 8.6E-41 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_0947 0e08d5d468a7ff9f514ec66b19eed55a 358 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 42 351 5.9E-130 T 14-10-2018 IPR017778 ABC transporter, urea, permease protein, UrtC YP_2739 a97a1fe4ffe602fd6d169b6f3b6ac9cd 74 Pfam PF07191 zinc-ribbons 4 68 8.1E-29 T 14-10-2018 IPR010807 Protein of unknown function DUF1407 YP_2739 a97a1fe4ffe602fd6d169b6f3b6ac9cd 74 Gene3D G3DSA:2.10.290.10 1 71 1.6E-27 T 14-10-2018 IPR029037 YfgJ-like YP_2739 a97a1fe4ffe602fd6d169b6f3b6ac9cd 74 ProDom PD060428 YFGJ CYTOPLASMIC VP0614 ECS3372 VC0765 YPO2873 Y1359 STY2763A VV0773 5 68 4.0E-32 T 14-10-2018 IPR010807 Protein of unknown function DUF1407 YP_2739 a97a1fe4ffe602fd6d169b6f3b6ac9cd 74 SUPERFAMILY SSF161187 2 70 1.96E-27 T 14-10-2018 YP_2268 c64d57ba96a9f0c5ec3fe6f39cc6dd7c 371 Gene3D G3DSA:3.30.9.10 59 313 8.3E-130 T 14-10-2018 YP_2268 c64d57ba96a9f0c5ec3fe6f39cc6dd7c 371 Hamap MF_00515 N-methyl-L-tryptophan oxidase [solA]. 1 371 77.871 T 14-10-2018 IPR023493 N-methyl-L-tryptophan oxidase MTOX GO:0050131|GO:0050660|GO:0055114 YP_2268 c64d57ba96a9f0c5ec3fe6f39cc6dd7c 371 SUPERFAMILY SSF54373 212 313 2.63E-20 T 14-10-2018 YP_2268 c64d57ba96a9f0c5ec3fe6f39cc6dd7c 371 Pfam PF01266 FAD dependent oxidoreductase 4 350 1.9E-46 T 14-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 YP_2268 c64d57ba96a9f0c5ec3fe6f39cc6dd7c 371 Gene3D G3DSA:3.50.50.60 4 367 8.3E-130 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2268 c64d57ba96a9f0c5ec3fe6f39cc6dd7c 371 SUPERFAMILY SSF51905 2 370 3.56E-45 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0976 4c74439d5fcb7812eb85b9242ed2101d 580 Pfam PF00005 ABC transporter 348 491 6.4E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0976 4c74439d5fcb7812eb85b9242ed2101d 580 Pfam PF00005 ABC transporter 28 167 5.4E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0976 4c74439d5fcb7812eb85b9242ed2101d 580 SUPERFAMILY SSF52540 330 551 2.72E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0976 4c74439d5fcb7812eb85b9242ed2101d 580 SUPERFAMILY SSF52540 7 228 1.71E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0976 4c74439d5fcb7812eb85b9242ed2101d 580 Gene3D G3DSA:3.40.50.300 2 241 2.1E-57 T 14-10-2018 YP_0976 4c74439d5fcb7812eb85b9242ed2101d 580 Gene3D G3DSA:3.40.50.300 325 557 2.4E-63 T 14-10-2018 YP_0976 4c74439d5fcb7812eb85b9242ed2101d 580 SMART SM00382 34 268 3.3E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0976 4c74439d5fcb7812eb85b9242ed2101d 580 SMART SM00382 356 537 2.8E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0976 4c74439d5fcb7812eb85b9242ed2101d 580 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_pCD28 db7f26b2ae0aa85d73d29ee3cc66c799 87 Gene3D G3DSA:1.20.58.90 7 86 4.7E-12 T 14-10-2018 YP_pCD28 db7f26b2ae0aa85d73d29ee3cc66c799 87 Pfam PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF 16 86 4.0E-27 T 14-10-2018 IPR021123 Type III secretion, needle-protein-like GO:0009405|GO:0015031 YP_pCD28 db7f26b2ae0aa85d73d29ee3cc66c799 87 SUPERFAMILY SSF140129 12 82 8.63E-23 T 14-10-2018 IPR037203 Type III secretion, needle-protein-like superfamily GO:0009405|GO:0015031 YP_pCD28 db7f26b2ae0aa85d73d29ee3cc66c799 87 TIGRFAM TIGR02105 III_needle: type III secretion apparatus needle protein 14 86 6.2E-31 T 14-10-2018 IPR011841 Type III secretion system, needle protein GO:0008565|GO:0009405|GO:0015031 YP_2925 53fe45bc5467938a945350904db5f77a 331 Pfam PF13557 Putative MetA-pathway of phenol degradation 115 266 9.2E-6 T 14-10-2018 IPR025737 MetA-pathway of phenol degradation, putative YP_3999 21e7ddc59ca11eeae6b8a54a5950c89d 178 SUPERFAMILY SSF46689 64 165 6.27E-14 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3999 21e7ddc59ca11eeae6b8a54a5950c89d 178 SUPERFAMILY SSF48295 3 60 1.73E-12 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 YP_3999 21e7ddc59ca11eeae6b8a54a5950c89d 178 Pfam PF13518 Helix-turn-helix domain 15 60 4.7E-9 T 14-10-2018 YP_3999 21e7ddc59ca11eeae6b8a54a5950c89d 178 Pfam PF13518 Helix-turn-helix domain 70 122 7.7E-12 T 14-10-2018 YP_3063 21e7ddc59ca11eeae6b8a54a5950c89d 178 SUPERFAMILY SSF46689 64 165 6.27E-14 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3063 21e7ddc59ca11eeae6b8a54a5950c89d 178 SUPERFAMILY SSF48295 3 60 1.73E-12 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 YP_3063 21e7ddc59ca11eeae6b8a54a5950c89d 178 Pfam PF13518 Helix-turn-helix domain 15 60 4.7E-9 T 14-10-2018 YP_3063 21e7ddc59ca11eeae6b8a54a5950c89d 178 Pfam PF13518 Helix-turn-helix domain 70 122 7.7E-12 T 14-10-2018 YP_0591 21e7ddc59ca11eeae6b8a54a5950c89d 178 SUPERFAMILY SSF46689 64 165 6.27E-14 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0591 21e7ddc59ca11eeae6b8a54a5950c89d 178 SUPERFAMILY SSF48295 3 60 1.73E-12 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 YP_0591 21e7ddc59ca11eeae6b8a54a5950c89d 178 Pfam PF13518 Helix-turn-helix domain 15 60 4.7E-9 T 14-10-2018 YP_0591 21e7ddc59ca11eeae6b8a54a5950c89d 178 Pfam PF13518 Helix-turn-helix domain 70 122 7.7E-12 T 14-10-2018 YP_3958 21e7ddc59ca11eeae6b8a54a5950c89d 178 SUPERFAMILY SSF46689 64 165 6.27E-14 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3958 21e7ddc59ca11eeae6b8a54a5950c89d 178 SUPERFAMILY SSF48295 3 60 1.73E-12 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 YP_3958 21e7ddc59ca11eeae6b8a54a5950c89d 178 Pfam PF13518 Helix-turn-helix domain 15 60 4.7E-9 T 14-10-2018 YP_3958 21e7ddc59ca11eeae6b8a54a5950c89d 178 Pfam PF13518 Helix-turn-helix domain 70 122 7.7E-12 T 14-10-2018 YP_1635 84fe84486efad155a84c55a62ff8dd92 279 Pfam PF03609 PTS system sorbose-specific iic component 20 251 5.0E-74 T 14-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 YP_1635 84fe84486efad155a84c55a62ff8dd92 279 TIGRFAM TIGR00822 EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component 15 279 1.5E-123 T 14-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 YP_1625 0c39a344e401feafc8a444d1ad3ec041 455 SUPERFAMILY SSF103473 22 447 3.79E-80 T 14-10-2018 IPR036259 MFS transporter superfamily YP_1625 0c39a344e401feafc8a444d1ad3ec041 455 TIGRFAM TIGR02332 HpaX: 4-hydroxyphenylacetate permease 28 436 6.6E-237 T 14-10-2018 IPR012707 4-hydroxyphenylacetate permease GO:1900754|GO:1901241 YP_1625 0c39a344e401feafc8a444d1ad3ec041 455 Gene3D G3DSA:1.20.1250.20 21 450 2.2E-73 T 14-10-2018 YP_1625 0c39a344e401feafc8a444d1ad3ec041 455 Pfam PF07690 Major Facilitator Superfamily 40 395 4.4E-44 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_1625 0c39a344e401feafc8a444d1ad3ec041 455 Pfam PF11700 Vacuole effluxer Atg22 like 399 449 6.1E-6 T 14-10-2018 IPR024671 Autophagy-related protein 22-like YP_2470 8c0a5580a2fd5f485556cbdb066bf7b6 228 Gene3D G3DSA:1.10.4190.10 2 204 7.5E-42 T 14-10-2018 IPR038277 UreF domain superfamily YP_2470 8c0a5580a2fd5f485556cbdb066bf7b6 228 Pfam PF01730 UreF 37 185 2.4E-22 T 14-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 YP_2470 8c0a5580a2fd5f485556cbdb066bf7b6 228 PIRSF PIRSF009467 2 228 4.5E-60 T 14-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 YP_2470 8c0a5580a2fd5f485556cbdb066bf7b6 228 Hamap MF_01385 Urease accessory protein UreF [ureF]. 5 228 22.069 T 14-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 YP_1343 2e7a9e19b8ebd7d8c28381d085ae5169 809 Gene3D G3DSA:3.30.465.10 459 787 7.5E-60 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YP_1343 2e7a9e19b8ebd7d8c28381d085ae5169 809 Gene3D G3DSA:3.30.43.10 365 446 1.4E-15 T 14-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 YP_1343 2e7a9e19b8ebd7d8c28381d085ae5169 809 SUPERFAMILY SSF55729 179 338 3.84E-20 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_1343 2e7a9e19b8ebd7d8c28381d085ae5169 809 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 393 426 - T 14-10-2018 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 YP_1343 2e7a9e19b8ebd7d8c28381d085ae5169 809 Pfam PF13480 Acetyltransferase (GNAT) domain 191 326 8.9E-11 T 14-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 YP_1343 2e7a9e19b8ebd7d8c28381d085ae5169 809 Gene3D G3DSA:3.40.462.20 561 758 7.5E-60 T 14-10-2018 YP_1343 2e7a9e19b8ebd7d8c28381d085ae5169 809 Pfam PF01565 FAD binding domain 393 529 3.3E-29 T 14-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 YP_1343 2e7a9e19b8ebd7d8c28381d085ae5169 809 Gene3D G3DSA:3.40.630.30 171 334 1.2E-5 T 14-10-2018 YP_1343 2e7a9e19b8ebd7d8c28381d085ae5169 809 SUPERFAMILY SSF56176 376 559 1.5E-38 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YP_0979 47d4c236c96c64b9a2ed4a75fdec5707 109 Pfam PF07110 EthD domain 19 96 1.9E-15 T 14-10-2018 IPR009799 EthD domain YP_0979 47d4c236c96c64b9a2ed4a75fdec5707 109 TIGRFAM TIGR02118 TIGR02118: conserved hypothetical protein 8 108 6.0E-33 T 14-10-2018 IPR009799 EthD domain YP_0979 47d4c236c96c64b9a2ed4a75fdec5707 109 Gene3D G3DSA:3.30.70.100 7 104 2.3E-28 T 14-10-2018 YP_0979 47d4c236c96c64b9a2ed4a75fdec5707 109 SUPERFAMILY SSF54909 8 105 1.92E-28 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel YP_1865 af3a46b32065ced1e54240d0d83835c0 360 Gene3D G3DSA:3.30.70.1660 282 360 3.8E-15 T 14-10-2018 YP_1865 af3a46b32065ced1e54240d0d83835c0 360 Gene3D G3DSA:3.30.70.1660 107 221 4.2E-46 T 14-10-2018 YP_1865 af3a46b32065ced1e54240d0d83835c0 360 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 YP_1865 af3a46b32065ced1e54240d0d83835c0 360 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 40.904 T 14-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 YP_1865 af3a46b32065ced1e54240d0d83835c0 360 SUPERFAMILY SSF75620 12 353 4.97E-135 T 14-10-2018 YP_1865 af3a46b32065ced1e54240d0d83835c0 360 SMART SM00937 63 178 5.6E-70 T 14-10-2018 IPR005139 Peptide chain release factor GO:0006415 YP_1865 af3a46b32065ced1e54240d0d83835c0 360 Pfam PF03462 PCRF domain 12 203 2.6E-74 T 14-10-2018 IPR005139 Peptide chain release factor GO:0006415 YP_1865 af3a46b32065ced1e54240d0d83835c0 360 Gene3D G3DSA:3.30.160.20 222 281 4.0E-35 T 14-10-2018 YP_1865 af3a46b32065ced1e54240d0d83835c0 360 Pfam PF00472 RF-1 domain 216 321 2.2E-40 T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 YP_1865 af3a46b32065ced1e54240d0d83835c0 360 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 358 5.3E-172 T 14-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 YP_2299 1025f6e653aed45af243cdd164f0661a 373 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2299 1025f6e653aed45af243cdd164f0661a 373 Gene3D G3DSA:2.40.50.940 236 363 2.4E-24 T 14-10-2018 YP_2299 1025f6e653aed45af243cdd164f0661a 373 Gene3D G3DSA:3.40.50.300 18 235 3.1E-65 T 14-10-2018 YP_2299 1025f6e653aed45af243cdd164f0661a 373 Pfam PF00005 ABC transporter 34 175 1.3E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2299 1025f6e653aed45af243cdd164f0661a 373 Gene3D G3DSA:2.40.50.140 298 354 2.4E-24 T 14-10-2018 YP_2299 1025f6e653aed45af243cdd164f0661a 373 SUPERFAMILY SSF52540 18 257 2.46E-84 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2299 1025f6e653aed45af243cdd164f0661a 373 Pfam PF08402 TOBE domain 291 362 5.2E-5 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YP_2299 1025f6e653aed45af243cdd164f0661a 373 SMART SM00382 42 225 7.5E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2299 1025f6e653aed45af243cdd164f0661a 373 SUPERFAMILY SSF50331 251 369 2.08E-19 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YP_3745 cb4c62358ac33fe41db0ae3147a7635d 270 SMART SM01133 21 257 3.8E-78 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YP_3745 cb4c62358ac33fe41db0ae3147a7635d 270 SUPERFAMILY SSF51569 18 257 2.09E-80 T 14-10-2018 YP_3745 cb4c62358ac33fe41db0ae3147a7635d 270 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 22 243 4.0E-79 T 14-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YP_3745 cb4c62358ac33fe41db0ae3147a7635d 270 Pfam PF01791 DeoC/LacD family aldolase 23 255 4.9E-45 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YP_3745 cb4c62358ac33fe41db0ae3147a7635d 270 Hamap MF_00592 Deoxyribose-phosphate aldolase [deoC]. 12 270 52.645 T 14-10-2018 IPR023649 Deoxyribose-phosphate aldolase type II GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 YP_3745 cb4c62358ac33fe41db0ae3147a7635d 270 Gene3D G3DSA:3.20.20.70 12 270 1.2E-100 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3745 cb4c62358ac33fe41db0ae3147a7635d 270 PIRSF PIRSF001357 16 266 1.8E-79 T 14-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YP_2525 f60955457479d11cf1eaf8cca5bedab0 243 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 6 239 3.2E-104 T 14-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 YP_2525 f60955457479d11cf1eaf8cca5bedab0 243 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 243 132.374 T 14-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 YP_2525 f60955457479d11cf1eaf8cca5bedab0 243 SUPERFAMILY SSF63892 4 242 3.27E-100 T 14-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 YP_2525 f60955457479d11cf1eaf8cca5bedab0 243 Gene3D G3DSA:3.20.20.70 1 243 1.2E-108 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_2525 f60955457479d11cf1eaf8cca5bedab0 243 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 6 238 2.9E-102 T 14-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 YP_3510 6b0ee1f37217aaedf18f6a7e612ac122 235 Pfam PF04231 Endonuclease I 44 229 1.9E-42 T 14-10-2018 IPR007346 Endonuclease I GO:0004518 YP_3510 6b0ee1f37217aaedf18f6a7e612ac122 235 SUPERFAMILY SSF54060 25 230 1.29E-86 T 14-10-2018 YP_1765 334f3fc560f7e9a489fce60ff7dcf519 207 SUPERFAMILY SSF56925 19 167 1.07E-10 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_1765 334f3fc560f7e9a489fce60ff7dcf519 207 Pfam PF13505 Outer membrane protein beta-barrel domain 8 207 3.0E-10 T 14-10-2018 IPR027385 Outer membrane protein beta-barrel YP_2756 55c6b48094a8c3695a25c0587c19bf2a 202 SUPERFAMILY SSF49401 54 202 6.96E-22 T 14-10-2018 IPR008966 Adhesion domain superfamily YP_2756 55c6b48094a8c3695a25c0587c19bf2a 202 Pfam PF00419 Fimbrial protein 48 201 4.1E-14 T 14-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YP_2756 55c6b48094a8c3695a25c0587c19bf2a 202 Gene3D G3DSA:2.60.40.1090 46 201 8.4E-24 T 14-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YP_2379 809062f9c63e0f304e4262a20e1796e8 378 Gene3D G3DSA:1.10.260.40 38 104 1.5E-20 T 14-10-2018 YP_2379 809062f9c63e0f304e4262a20e1796e8 378 Pfam PF13377 Periplasmic binding protein-like domain 213 362 2.5E-26 T 14-10-2018 YP_2379 809062f9c63e0f304e4262a20e1796e8 378 ProSitePatterns PS00356 LacI-type HTH domain signature. 49 67 - T 14-10-2018 YP_2379 809062f9c63e0f304e4262a20e1796e8 378 Gene3D G3DSA:3.40.50.2300 202 335 9.8E-58 T 14-10-2018 YP_2379 809062f9c63e0f304e4262a20e1796e8 378 SMART SM00354 46 116 7.1E-29 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2379 809062f9c63e0f304e4262a20e1796e8 378 Pfam PF00356 Bacterial regulatory proteins, lacI family 48 93 4.3E-18 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YP_2379 809062f9c63e0f304e4262a20e1796e8 378 Gene3D G3DSA:3.40.50.2300 108 351 9.8E-58 T 14-10-2018 YP_2379 809062f9c63e0f304e4262a20e1796e8 378 SUPERFAMILY SSF53822 104 358 2.78E-42 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_2379 809062f9c63e0f304e4262a20e1796e8 378 SUPERFAMILY SSF47413 46 104 1.31E-16 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_3826 04ef9042f43a0fee95eb20210ee798f3 100 Gene3D G3DSA:3.30.750.24 12 100 3.5E-12 T 14-10-2018 IPR036513 STAS domain superfamily YP_3826 04ef9042f43a0fee95eb20210ee798f3 100 Pfam PF13466 STAS domain 14 91 8.8E-19 T 14-10-2018 IPR002645 STAS domain YP_3826 04ef9042f43a0fee95eb20210ee798f3 100 SUPERFAMILY SSF52091 13 96 1.04E-16 T 14-10-2018 IPR036513 STAS domain superfamily YP_0762 7cbc050c8e437f125acecfed57b36059 456 Gene3D G3DSA:3.30.70.100 392 456 1.5E-27 T 14-10-2018 YP_0762 7cbc050c8e437f125acecfed57b36059 456 SUPERFAMILY SSF103473 3 392 4.19E-62 T 14-10-2018 IPR036259 MFS transporter superfamily YP_0762 7cbc050c8e437f125acecfed57b36059 456 Pfam PF07690 Major Facilitator Superfamily 22 348 1.1E-37 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_0762 7cbc050c8e437f125acecfed57b36059 456 Gene3D G3DSA:1.20.1250.20 5 391 3.1E-100 T 14-10-2018 YP_1679 da587c1e53b3a011a6ab4d0d6877d134 509 ProSitePatterns PS00218 Amino acid permeases signature. 59 89 - T 14-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 YP_1679 da587c1e53b3a011a6ab4d0d6877d134 509 Pfam PF00324 Amino acid permease 34 472 3.3E-121 T 14-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 YP_1679 da587c1e53b3a011a6ab4d0d6877d134 509 PIRSF PIRSF006060 20 484 1.2E-62 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_1679 da587c1e53b3a011a6ab4d0d6877d134 509 Gene3D G3DSA:1.20.1740.10 26 482 3.3E-62 T 14-10-2018 YP_1386 5e539c21d472f4b8178f69985538f972 436 Gene3D G3DSA:3.20.20.70 73 436 3.3E-77 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_1386 5e539c21d472f4b8178f69985538f972 436 Pfam PF04055 Radical SAM superfamily 80 245 2.3E-10 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YP_1386 5e539c21d472f4b8178f69985538f972 436 SUPERFAMILY SSF102114 74 400 9.29E-35 T 14-10-2018 YP_1386 5e539c21d472f4b8178f69985538f972 436 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 328 418 1.9E-10 T 14-10-2018 IPR023885 4Fe4S-binding SPASM domain YP_0982 37acd4beb40e4f341d046bf13253e7b6 369 Gene3D G3DSA:3.20.20.70 1 369 1.4E-134 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_0982 37acd4beb40e4f341d046bf13253e7b6 369 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 3 342 5.4E-90 T 14-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 YP_0982 37acd4beb40e4f341d046bf13253e7b6 369 SUPERFAMILY SSF51395 1 365 9.53E-117 T 14-10-2018 YP_1301 826d16940647da6584cc49542a85982c 498 Pfam PF00171 Aldehyde dehydrogenase family 30 490 8.1E-160 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YP_1301 826d16940647da6584cc49542a85982c 498 Gene3D G3DSA:3.40.605.10 36 488 9.8E-167 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YP_1301 826d16940647da6584cc49542a85982c 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 289 300 - T 14-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 YP_1301 826d16940647da6584cc49542a85982c 498 Gene3D G3DSA:3.40.309.10 265 459 9.8E-167 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YP_1301 826d16940647da6584cc49542a85982c 498 SUPERFAMILY SSF53720 15 490 5.63E-157 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YP_pMT097 fc8a3ab5d41ff854eb0aa2ba567262c4 669 Gene3D G3DSA:1.10.10.2830 120 229 9.3E-16 T 14-10-2018 YP_pMT097 fc8a3ab5d41ff854eb0aa2ba567262c4 669 Pfam PF02195 ParB-like nuclease domain 38 132 3.3E-16 T 14-10-2018 IPR003115 ParB/Sulfiredoxin YP_pMT097 fc8a3ab5d41ff854eb0aa2ba567262c4 669 SUPERFAMILY SSF110849 36 135 1.26E-12 T 14-10-2018 IPR036086 ParB/Sulfiredoxin superfamily YP_pMT097 fc8a3ab5d41ff854eb0aa2ba567262c4 669 SMART SM00470 37 133 3.5E-22 T 14-10-2018 IPR003115 ParB/Sulfiredoxin YP_pMT097 fc8a3ab5d41ff854eb0aa2ba567262c4 669 SUPERFAMILY SSF109709 127 218 3.01E-18 T 14-10-2018 YP_3973 0e771fc2694be7b928a235bfbe3d6021 649 Gene3D G3DSA:1.10.287.950 309 612 5.8E-93 T 14-10-2018 YP_3973 0e771fc2694be7b928a235bfbe3d6021 649 Gene3D G3DSA:1.20.1440.210 57 272 7.4E-10 T 14-10-2018 YP_3973 0e771fc2694be7b928a235bfbe3d6021 649 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 384 413 3.2E-58 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_3973 0e771fc2694be7b928a235bfbe3d6021 649 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 538 567 3.2E-58 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_3973 0e771fc2694be7b928a235bfbe3d6021 649 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 461 488 3.2E-58 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_3973 0e771fc2694be7b928a235bfbe3d6021 649 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 490 519 3.2E-58 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YP_3973 0e771fc2694be7b928a235bfbe3d6021 649 SMART SM00304 310 362 1.4E-5 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_3973 0e771fc2694be7b928a235bfbe3d6021 649 SMART SM00283 363 610 1.7E-87 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YP_3973 0e771fc2694be7b928a235bfbe3d6021 649 Pfam PF16591 Helical bimodular sensor domain 57 282 6.7E-14 T 14-10-2018 IPR032255 Helical bimodular sensor domain YP_3973 0e771fc2694be7b928a235bfbe3d6021 649 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 422 577 9.2E-56 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YP_3973 0e771fc2694be7b928a235bfbe3d6021 649 Pfam PF00672 HAMP domain 310 358 1.8E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_3973 0e771fc2694be7b928a235bfbe3d6021 649 SMART SM01358 39 288 3.1E-45 T 14-10-2018 IPR032255 Helical bimodular sensor domain YP_3973 0e771fc2694be7b928a235bfbe3d6021 649 SUPERFAMILY SSF58104 330 611 1.7E-74 T 14-10-2018 YP_3973 0e771fc2694be7b928a235bfbe3d6021 649 Gene3D G3DSA:1.20.1440.210 135 245 7.4E-10 T 14-10-2018 YP_3727 dc96b61bcc514b632a7bb84919d03c34 288 SUPERFAMILY SSF55136 123 287 2.51E-58 T 14-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily YP_3727 dc96b61bcc514b632a7bb84919d03c34 288 Gene3D G3DSA:1.10.10.60 3 55 1.2E-26 T 14-10-2018 YP_3727 dc96b61bcc514b632a7bb84919d03c34 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 4.3E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_3727 dc96b61bcc514b632a7bb84919d03c34 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 4.3E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_3727 dc96b61bcc514b632a7bb84919d03c34 288 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 55 100 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YP_3727 dc96b61bcc514b632a7bb84919d03c34 288 Gene3D G3DSA:3.20.80.10 122 288 1.7E-49 T 14-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily YP_3727 dc96b61bcc514b632a7bb84919d03c34 288 Pfam PF12833 Helix-turn-helix domain 27 105 1.6E-20 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_3727 dc96b61bcc514b632a7bb84919d03c34 288 Gene3D G3DSA:1.10.10.60 56 121 1.0E-20 T 14-10-2018 YP_3727 dc96b61bcc514b632a7bb84919d03c34 288 SUPERFAMILY SSF46689 6 55 6.72E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3727 dc96b61bcc514b632a7bb84919d03c34 288 SMART SM00342 21 104 3.0E-31 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_3727 dc96b61bcc514b632a7bb84919d03c34 288 SUPERFAMILY SSF46689 57 106 6.27E-12 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3727 dc96b61bcc514b632a7bb84919d03c34 288 SMART SM00871 126 287 6.7E-20 T 14-10-2018 IPR010499 Bacterial transcription activator, effector binding YP_3727 dc96b61bcc514b632a7bb84919d03c34 288 Pfam PF06445 GyrI-like small molecule binding domain 127 287 7.6E-27 T 14-10-2018 IPR029442 GyrI-like small molecule binding domain YP_1241 3dd796abd83915c96a96afde6db6ec4f 335 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 232 2.3E-29 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YP_1241 3dd796abd83915c96a96afde6db6ec4f 335 Gene3D G3DSA:3.40.50.720 1 334 5.9E-58 T 14-10-2018 YP_1241 3dd796abd83915c96a96afde6db6ec4f 335 SUPERFAMILY SSF51735 1 332 2.77E-59 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0806 6cdaa44dc456be71882d41e11167a7e4 187 Gene3D G3DSA:3.40.50.2020 2 187 1.3E-70 T 14-10-2018 YP_0806 6cdaa44dc456be71882d41e11167a7e4 187 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 15 184 38.687 T 14-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 YP_0806 6cdaa44dc456be71882d41e11167a7e4 187 Pfam PF00156 Phosphoribosyl transferase domain 35 164 1.7E-18 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 YP_0806 6cdaa44dc456be71882d41e11167a7e4 187 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 15 183 2.0E-73 T 14-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 YP_0806 6cdaa44dc456be71882d41e11167a7e4 187 SUPERFAMILY SSF53271 17 184 1.7E-53 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like YP_0101 16846e6c3c110ee2f0aafe0ffadc8e1d 438 ProSitePatterns PS00543 HlyD family secretion proteins signature. 400 422 - T 14-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 YP_0101 16846e6c3c110ee2f0aafe0ffadc8e1d 438 Pfam PF13437 HlyD family secretion protein 273 366 2.0E-11 T 14-10-2018 YP_0101 16846e6c3c110ee2f0aafe0ffadc8e1d 438 SUPERFAMILY SSF51230 73 114 4.71E-5 T 14-10-2018 IPR011053 Single hybrid motif YP_0101 16846e6c3c110ee2f0aafe0ffadc8e1d 438 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 284 305 3.5E-10 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YP_0101 16846e6c3c110ee2f0aafe0ffadc8e1d 438 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 89 109 3.5E-10 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YP_0101 16846e6c3c110ee2f0aafe0ffadc8e1d 438 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 318 342 3.5E-10 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YP_3190 4e42f3b2ed0ee1ada3622ae6e424aa60 246 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 60 237 2.4E-72 T 14-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 YP_3190 4e42f3b2ed0ee1ada3622ae6e424aa60 246 Hamap MF_01001 UDP-N-acetyl-D-mannosaminuronic acid transferase [wecG]. 1 246 57.915 T 14-10-2018 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase GO:0009246|GO:0016758 YP_3190 4e42f3b2ed0ee1ada3622ae6e424aa60 246 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 65 231 3.8E-51 T 14-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 YP_2080 f4894e474cbe38c330346c7a1d554ba8 120 SUPERFAMILY SSF55021 29 102 4.89E-16 T 14-10-2018 YP_2080 f4894e474cbe38c330346c7a1d554ba8 120 Gene3D G3DSA:3.30.70.260 21 117 8.4E-29 T 14-10-2018 YP_2080 f4894e474cbe38c330346c7a1d554ba8 120 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 36 99 2.0E-15 T 14-10-2018 YP_2080 f4894e474cbe38c330346c7a1d554ba8 120 Pfam PF13710 ACT domain 39 99 6.1E-9 T 14-10-2018 YP_3145 b6f5aae124cdecea55536015df89bb56 112 Pfam PF04219 Protein of unknown function, DUF 10 98 8.1E-40 T 14-10-2018 IPR007335 Protein of unknown function DUF413 YP_0526 79a15a7bf2ab6ccc5e2bbe6f7e7e7bed 637 Pfam PF11741 AMIN domain 71 163 1.8E-7 T 14-10-2018 IPR021731 AMIN domain YP_0526 79a15a7bf2ab6ccc5e2bbe6f7e7e7bed 637 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 243 462 1.4E-48 T 14-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 YP_0526 79a15a7bf2ab6ccc5e2bbe6f7e7e7bed 637 SMART SM00646 303 462 6.7E-73 T 14-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 YP_0526 79a15a7bf2ab6ccc5e2bbe6f7e7e7bed 637 SMART SM00257 526 569 3.4E-12 T 14-10-2018 IPR018392 LysM domain YP_0526 79a15a7bf2ab6ccc5e2bbe6f7e7e7bed 637 SMART SM00257 592 635 2.7E-16 T 14-10-2018 IPR018392 LysM domain YP_0526 79a15a7bf2ab6ccc5e2bbe6f7e7e7bed 637 Gene3D G3DSA:2.60.40.3500 59 168 1.8E-13 T 14-10-2018 YP_0526 79a15a7bf2ab6ccc5e2bbe6f7e7e7bed 637 SUPERFAMILY SSF54106 526 569 3.66E-10 T 14-10-2018 YP_0526 79a15a7bf2ab6ccc5e2bbe6f7e7e7bed 637 Gene3D G3DSA:3.10.350.10 522 575 1.6E-14 T 14-10-2018 IPR036779 LysM domain superfamily YP_0526 79a15a7bf2ab6ccc5e2bbe6f7e7e7bed 637 SUPERFAMILY SSF53187 241 465 3.77E-52 T 14-10-2018 YP_0526 79a15a7bf2ab6ccc5e2bbe6f7e7e7bed 637 Gene3D G3DSA:3.10.350.10 576 637 1.1E-16 T 14-10-2018 IPR036779 LysM domain superfamily YP_0526 79a15a7bf2ab6ccc5e2bbe6f7e7e7bed 637 Pfam PF01476 LysM domain 527 569 6.4E-11 T 14-10-2018 IPR018392 LysM domain YP_0526 79a15a7bf2ab6ccc5e2bbe6f7e7e7bed 637 Pfam PF01476 LysM domain 593 635 1.1E-13 T 14-10-2018 IPR018392 LysM domain YP_0526 79a15a7bf2ab6ccc5e2bbe6f7e7e7bed 637 SUPERFAMILY SSF54106 592 635 6.8E-11 T 14-10-2018 YP_0526 79a15a7bf2ab6ccc5e2bbe6f7e7e7bed 637 Gene3D G3DSA:3.40.630.40 230 472 6.9E-70 T 14-10-2018 YP_3477 fc4305900dd75b535e3f5a940abde9dd 92 Pfam PF12759 InsA C-terminal domain 44 89 2.2E-20 T 14-10-2018 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YP_3477 fc4305900dd75b535e3f5a940abde9dd 92 Pfam PF03811 InsA N-terminal domain 2 37 3.8E-9 T 14-10-2018 IPR003220 InsA N-terminal domain GO:0006313 YP_3616 69fe6e83efd9ba27b307a94346e7cdc6 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_3616 69fe6e83efd9ba27b307a94346e7cdc6 340 Pfam PF00665 Integrase core domain 118 243 1.5E-25 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_3616 69fe6e83efd9ba27b307a94346e7cdc6 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_3616 69fe6e83efd9ba27b307a94346e7cdc6 340 SUPERFAMILY SSF46689 12 86 1.31E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3616 69fe6e83efd9ba27b307a94346e7cdc6 340 SUPERFAMILY SSF53098 118 290 6.07E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1549 8cb6b696444ffe532ff471843371f91a 169 TIGRFAM TIGR03823 FliZ: flagellar regulatory protein FliZ 1 168 1.6E-92 T 14-10-2018 IPR022523 Flagellar regulator, FliZ YP_1549 8cb6b696444ffe532ff471843371f91a 169 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 92 167 4.9E-7 T 14-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 YP_3819 a820ff9beb14f0f2d48793a65cc81554 379 Pfam PF03969 AFG1-like ATPase 10 374 5.2E-148 T 14-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 YP_3819 a820ff9beb14f0f2d48793a65cc81554 379 SUPERFAMILY SSF52540 72 214 1.73E-13 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3819 a820ff9beb14f0f2d48793a65cc81554 379 Gene3D G3DSA:3.40.50.300 26 201 4.7E-19 T 14-10-2018 YP_3819 a820ff9beb14f0f2d48793a65cc81554 379 Hamap MF_01919 Cell division protein ZapE [zapE]. 8 379 53.031 T 14-10-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 YP_0378 a30b0c35301c87e81c0623226e5a171c 205 Gene3D G3DSA:3.90.950.20 38 204 3.8E-61 T 14-10-2018 IPR036653 CinA-like, C-terminal YP_0378 a30b0c35301c87e81c0623226e5a171c 205 Pfam PF02464 Competence-damaged protein 52 201 3.8E-58 T 14-10-2018 IPR008136 CinA, C-terminal YP_0378 a30b0c35301c87e81c0623226e5a171c 205 SUPERFAMILY SSF142433 49 202 4.71E-57 T 14-10-2018 IPR036653 CinA-like, C-terminal YP_0378 a30b0c35301c87e81c0623226e5a171c 205 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 56 200 3.3E-57 T 14-10-2018 IPR008136 CinA, C-terminal YP_3950 bd87f8b12b9ccd5d0cccd542b8931d8c 265 SUPERFAMILY SSF46689 203 261 7.62E-7 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3950 bd87f8b12b9ccd5d0cccd542b8931d8c 265 Pfam PF02954 Bacterial regulatory protein, Fis family 221 261 2.5E-5 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YP_3950 bd87f8b12b9ccd5d0cccd542b8931d8c 265 Gene3D G3DSA:1.10.10.60 208 265 6.2E-6 T 14-10-2018 YP_1568 655446394ff80fa2f02100fb9f4bc8d8 156 Pfam PF03748 Flagellar basal body-associated protein FliL 54 154 3.4E-21 T 14-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 YP_3187 8088c59ececc26aefb64a50206ee2581 418 Pfam PF01943 Polysaccharide biosynthesis protein 4 283 2.7E-10 T 14-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 YP_3187 8088c59ececc26aefb64a50206ee2581 418 Hamap MF_02024 Lipid III flippase [wzxE]. 1 416 39.689 T 14-10-2018 IPR032896 Lipid III flippase WzxE GO:0005886|GO:0009246 YP_0672 be3f448c5fc33971aa30205bcb46f80a 60 Pfam PF13318 Protein of unknown function (DUF4089) 9 58 1.4E-17 T 14-10-2018 IPR025148 Protein of unknown function DUF4089 YP_1101 450db27b302d339fe95eb2ec48aedee2 241 SUPERFAMILY SSF52540 1 235 3.51E-76 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1101 450db27b302d339fe95eb2ec48aedee2 241 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1101 450db27b302d339fe95eb2ec48aedee2 241 PIRSF PIRSF039085 1 241 6.6E-104 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 YP_1101 450db27b302d339fe95eb2ec48aedee2 241 Gene3D G3DSA:3.40.50.300 1 240 1.9E-75 T 14-10-2018 YP_1101 450db27b302d339fe95eb2ec48aedee2 241 Pfam PF00005 ABC transporter 18 165 4.2E-34 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1101 450db27b302d339fe95eb2ec48aedee2 241 SMART SM00382 26 213 9.5E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2333 fe21d4a6f7bb0455fd3bb4130ad183da 319 Gene3D G3DSA:3.40.1030.10 73 319 1.1E-91 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_2333 fe21d4a6f7bb0455fd3bb4130ad183da 319 SUPERFAMILY SSF47648 7 70 1.31E-13 T 14-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_2333 fe21d4a6f7bb0455fd3bb4130ad183da 319 SUPERFAMILY SSF52418 79 316 1.46E-44 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_2333 fe21d4a6f7bb0455fd3bb4130ad183da 319 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 68 2.8E-9 T 14-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_2333 fe21d4a6f7bb0455fd3bb4130ad183da 319 Pfam PF00591 Glycosyl transferase family, a/b domain 94 316 1.7E-5 T 14-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YP_2333 fe21d4a6f7bb0455fd3bb4130ad183da 319 Gene3D G3DSA:1.20.970.10 1 72 2.5E-30 T 14-10-2018 YP_0155 2f4c431c0fd8b236eaa85397bbabe1eb 329 Pfam PF05036 Sporulation related domain 245 318 3.0E-10 T 14-10-2018 IPR007730 Sporulation-like domain GO:0042834 YP_0155 2f4c431c0fd8b236eaa85397bbabe1eb 329 Gene3D G3DSA:3.30.70.1070 227 328 1.5E-33 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 YP_0155 2f4c431c0fd8b236eaa85397bbabe1eb 329 SUPERFAMILY SSF110997 244 309 5.1E-5 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 YP_0155 2f4c431c0fd8b236eaa85397bbabe1eb 329 Hamap MF_02021 Cell division protein DamX [damX]. 1 329 25.583 T 14-10-2018 IPR032899 Cell division protein DamX GO:0030428|GO:0032506 YP_2645 0b1e8e3073e89975244462e01073b89c 375 SUPERFAMILY SSF52058 59 347 2.72E-35 T 14-10-2018 YP_2645 0b1e8e3073e89975244462e01073b89c 375 Gene3D G3DSA:3.80.10.10 28 255 3.0E-52 T 14-10-2018 IPR032675 Leucine-rich repeat domain superfamily YP_2645 0b1e8e3073e89975244462e01073b89c 375 Pfam PF13855 Leucine rich repeat 104 161 4.8E-7 T 14-10-2018 IPR001611 Leucine-rich repeat GO:0005515 YP_2645 0b1e8e3073e89975244462e01073b89c 375 Pfam PF12468 Type III secretion system leucine rich repeat protein 6 55 1.7E-10 T 14-10-2018 IPR032674 LRR-containing bacterial E3 ligase, N-terminal MetaCyc: PWY-7511 YP_2645 0b1e8e3073e89975244462e01073b89c 375 SMART SM00369 103 125 90.0 T 14-10-2018 IPR003591 Leucine-rich repeat, typical subtype YP_2645 0b1e8e3073e89975244462e01073b89c 375 SMART SM00369 150 171 41.0 T 14-10-2018 IPR003591 Leucine-rich repeat, typical subtype YP_2645 0b1e8e3073e89975244462e01073b89c 375 SMART SM00369 127 148 160.0 T 14-10-2018 IPR003591 Leucine-rich repeat, typical subtype YP_2645 0b1e8e3073e89975244462e01073b89c 375 SMART SM00369 213 235 18.0 T 14-10-2018 IPR003591 Leucine-rich repeat, typical subtype YP_2645 0b1e8e3073e89975244462e01073b89c 375 SMART SM00364 148 167 5.4 T 14-10-2018 YP_2645 0b1e8e3073e89975244462e01073b89c 375 SMART SM00364 171 190 18.0 T 14-10-2018 YP_2645 0b1e8e3073e89975244462e01073b89c 375 SMART SM00364 62 81 86.0 T 14-10-2018 YP_2645 0b1e8e3073e89975244462e01073b89c 375 SMART SM00364 125 144 8.5 T 14-10-2018 YP_2645 0b1e8e3073e89975244462e01073b89c 375 SMART SM00364 82 101 13.0 T 14-10-2018 YP_2645 0b1e8e3073e89975244462e01073b89c 375 SMART SM00364 212 231 6.4 T 14-10-2018 YP_2645 0b1e8e3073e89975244462e01073b89c 375 SMART SM00364 102 121 5.8 T 14-10-2018 YP_2645 0b1e8e3073e89975244462e01073b89c 375 SMART SM00364 191 210 0.0022 T 14-10-2018 YP_2697 c31c78a31fe874e80d233a41b15421fa 212 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 14-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YP_2697 c31c78a31fe874e80d233a41b15421fa 212 Pfam PF00551 Formyl transferase 2 182 7.8E-67 T 14-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YP_2697 c31c78a31fe874e80d233a41b15421fa 212 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 188 32.16 T 14-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 YP_2697 c31c78a31fe874e80d233a41b15421fa 212 Gene3D G3DSA:3.40.50.170 2 212 9.9E-90 T 14-10-2018 YP_2697 c31c78a31fe874e80d233a41b15421fa 212 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 2 191 3.8E-81 T 14-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 YP_2697 c31c78a31fe874e80d233a41b15421fa 212 SUPERFAMILY SSF53328 2 201 2.22E-68 T 14-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YP_2922 9c1426beb8dbd5f0c1b404db42e6f747 143 Pfam PF15599 Immunity protein 63 49 129 1.8E-29 T 14-10-2018 IPR028952 Immunity protein 63 YP_0911 6fd3a751c65255fa688fe80119f7869b 604 Pfam PF02743 Cache domain 53 263 4.9E-26 T 14-10-2018 IPR033479 Double Cache domain 1 YP_0911 6fd3a751c65255fa688fe80119f7869b 604 Gene3D G3DSA:3.30.450.20 61 274 7.6E-49 T 14-10-2018 YP_0911 6fd3a751c65255fa688fe80119f7869b 604 Gene3D G3DSA:3.30.450.20 73 177 7.6E-49 T 14-10-2018 YP_0911 6fd3a751c65255fa688fe80119f7869b 604 SMART SM00283 356 603 1.4E-85 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YP_0911 6fd3a751c65255fa688fe80119f7869b 604 SUPERFAMILY SSF58104 323 604 2.88E-70 T 14-10-2018 YP_0911 6fd3a751c65255fa688fe80119f7869b 604 SMART SM00304 301 355 5.6E-13 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_0911 6fd3a751c65255fa688fe80119f7869b 604 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 418 570 1.8E-50 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YP_0911 6fd3a751c65255fa688fe80119f7869b 604 SUPERFAMILY SSF103190 73 186 8.24E-13 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily YP_0911 6fd3a751c65255fa688fe80119f7869b 604 Gene3D G3DSA:1.10.287.950 301 604 1.4E-83 T 14-10-2018 YP_0911 6fd3a751c65255fa688fe80119f7869b 604 Pfam PF00672 HAMP domain 302 350 1.2E-11 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YP_pMT105 acf45ecc3ff99c508a214cd6e46a70e0 225 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 24 30 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YP_pMT105 acf45ecc3ff99c508a214cd6e46a70e0 225 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 144 161 7.3E-23 T 14-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 YP_pMT105 acf45ecc3ff99c508a214cd6e46a70e0 225 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 54 74 7.3E-23 T 14-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 YP_pMT105 acf45ecc3ff99c508a214cd6e46a70e0 225 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 186 206 7.3E-23 T 14-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 YP_pMT105 acf45ecc3ff99c508a214cd6e46a70e0 225 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 20 34 7.3E-23 T 14-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 YP_pMT105 acf45ecc3ff99c508a214cd6e46a70e0 225 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 163 181 7.3E-23 T 14-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 YP_pMT105 acf45ecc3ff99c508a214cd6e46a70e0 225 Pfam PF01555 DNA methylase 21 200 5.1E-33 T 14-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 YP_pMT105 acf45ecc3ff99c508a214cd6e46a70e0 225 Gene3D G3DSA:3.40.50.150 1 218 7.2E-48 T 14-10-2018 YP_pMT105 acf45ecc3ff99c508a214cd6e46a70e0 225 SUPERFAMILY SSF53335 3 207 2.18E-52 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3149 29517221d8a9ea65eea864c3670fab01 308 Gene3D G3DSA:3.30.470.10 9 126 1.8E-111 T 14-10-2018 YP_3149 29517221d8a9ea65eea864c3670fab01 308 Pfam PF01063 Amino-transferase class IV 35 267 1.3E-48 T 14-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 YP_3149 29517221d8a9ea65eea864c3670fab01 308 ProSitePatterns PS00770 Aminotransferases class-IV signature. 193 222 - T 14-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 YP_3149 29517221d8a9ea65eea864c3670fab01 308 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 9 306 4.5E-144 T 14-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 YP_3149 29517221d8a9ea65eea864c3670fab01 308 Gene3D G3DSA:3.20.10.10 137 288 1.8E-111 T 14-10-2018 YP_3149 29517221d8a9ea65eea864c3670fab01 308 SUPERFAMILY SSF56752 6 306 2.09E-105 T 14-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 YP_3297 04ec44c532f228a99c57c1e4e0abb22f 159 Pfam PF06092 Enterobacterial putative membrane protein (DUF943) 7 157 5.6E-65 T 14-10-2018 IPR010351 Protein of unknown function DUF943 YP_3231 13e373c4376a9f46072abdc975ed5a96 139 Gene3D G3DSA:2.40.50.660 35 97 1.7E-13 T 14-10-2018 YP_3231 13e373c4376a9f46072abdc975ed5a96 139 Gene3D G3DSA:2.40.50.660 98 139 2.2E-8 T 14-10-2018 YP_3231 13e373c4376a9f46072abdc975ed5a96 139 Pfam PF10694 Protein of unknown function (DUF2500) 5 132 3.2E-40 T 14-10-2018 IPR019635 Protein of unknown function DUF2500 YP_3995 2eab9c02246fb83367cd662adf15bd39 112 Pfam PF07119 Protein of unknown function (DUF1375) 13 76 2.0E-15 T 14-10-2018 IPR010780 Protein of unknown function DUF1375 YP_3053 0812f8bfebd9631b37291e7ae723e110 157 Pfam PF03748 Flagellar basal body-associated protein FliL 58 157 1.3E-10 T 14-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 YP_1407 b05f63713b2f196a4a85ab830d103239 363 SUPERFAMILY SSF53822 45 310 1.61E-38 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_1407 b05f63713b2f196a4a85ab830d103239 363 Gene3D G3DSA:3.40.50.2300 48 314 8.3E-67 T 14-10-2018 YP_1407 b05f63713b2f196a4a85ab830d103239 363 Pfam PF13407 Periplasmic binding protein domain 60 306 9.2E-26 T 14-10-2018 IPR025997 Periplasmic binding protein YP_1407 b05f63713b2f196a4a85ab830d103239 363 Gene3D G3DSA:3.40.50.2300 149 317 8.3E-67 T 14-10-2018 YP_1758 2cd6977fbea57ddb615f692406a3b724 262 SUPERFAMILY SSF53067 7 251 4.72E-49 T 14-10-2018 YP_1758 2cd6977fbea57ddb615f692406a3b724 262 Pfam PF00480 ROK family 8 249 4.7E-55 T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YP_1758 2cd6977fbea57ddb615f692406a3b724 262 ProSitePatterns PS01125 ROK family signature. 136 163 - T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YP_1758 2cd6977fbea57ddb615f692406a3b724 262 Gene3D G3DSA:3.30.420.40 10 124 5.7E-72 T 14-10-2018 YP_1758 2cd6977fbea57ddb615f692406a3b724 262 Gene3D G3DSA:3.30.420.40 125 250 5.7E-72 T 14-10-2018 YP_2241 8e345356000c2dcec065be27b5371e0d 191 Pfam PF13036 Peptidoglycan-synthase activator LpoB 51 188 1.7E-34 T 14-10-2018 IPR014094 Penicillin-binding protein activator LpoB YP_2241 8e345356000c2dcec065be27b5371e0d 191 Gene3D G3DSA:3.40.50.10610 55 191 2.1E-53 T 14-10-2018 YP_2241 8e345356000c2dcec065be27b5371e0d 191 Hamap MF_01889 Penicillin-binding protein activator LpoB [lpoB]. 1 190 35.658 T 14-10-2018 IPR014094 Penicillin-binding protein activator LpoB YP_2241 8e345356000c2dcec065be27b5371e0d 191 TIGRFAM TIGR02722 lp_: uncharacterized lipoprotein 2 190 5.4E-59 T 14-10-2018 IPR014094 Penicillin-binding protein activator LpoB YP_2508 10df00bd47a3c0f51cc98b162a31271a 236 SMART SM00986 57 218 2.2E-41 T 14-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 YP_2508 10df00bd47a3c0f51cc98b162a31271a 236 SUPERFAMILY SSF52141 13 229 8.5E-97 T 14-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 YP_2508 10df00bd47a3c0f51cc98b162a31271a 236 Gene3D G3DSA:3.40.470.10 9 236 5.6E-107 T 14-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 YP_2508 10df00bd47a3c0f51cc98b162a31271a 236 SMART SM00987 57 218 2.2E-41 T 14-10-2018 YP_2508 10df00bd47a3c0f51cc98b162a31271a 236 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 14 222 5.6E-89 T 14-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 YP_2508 10df00bd47a3c0f51cc98b162a31271a 236 Pfam PF03167 Uracil DNA glycosylase superfamily 63 217 8.3E-24 T 14-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 YP_2508 10df00bd47a3c0f51cc98b162a31271a 236 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 65 74 - T 14-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 YP_2508 10df00bd47a3c0f51cc98b162a31271a 236 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 12 229 40.644 T 14-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 YP_1097 01a60ef69514f116d8833972278859fe 528 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 23 509 24.545 T 14-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 YP_1097 01a60ef69514f116d8833972278859fe 528 Gene3D G3DSA:3.60.110.10 230 492 1.5E-10 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YP_1097 01a60ef69514f116d8833972278859fe 528 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 76 472 1.8E-108 T 14-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 YP_1097 01a60ef69514f116d8833972278859fe 528 SUPERFAMILY SSF56317 229 504 5.89E-40 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YP_1097 01a60ef69514f116d8833972278859fe 528 Pfam PF00795 Carbon-nitrogen hydrolase 237 489 4.5E-38 T 14-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 YP_2743 31ef0368f548049ae14cf45d4347fee5 211 SUPERFAMILY SSF48452 97 196 1.07E-9 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2743 31ef0368f548049ae14cf45d4347fee5 211 PIRSF PIRSF006170 1 211 4.8E-56 T 14-10-2018 IPR026039 Uncharacterised protein family UPF0070 YP_2743 31ef0368f548049ae14cf45d4347fee5 211 Gene3D G3DSA:1.25.40.10 49 209 1.3E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2743 31ef0368f548049ae14cf45d4347fee5 211 Pfam PF09976 Tetratricopeptide repeat-like domain 15 210 2.6E-56 T 14-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 YP_2153 3002732422cb89f114e1fea494c5e654 202 Pfam PF00043 Glutathione S-transferase, C-terminal domain 102 190 9.0E-15 T 14-10-2018 IPR004046 Glutathione S-transferase, C-terminal YP_2153 3002732422cb89f114e1fea494c5e654 202 Gene3D G3DSA:3.40.30.10 4 194 6.0E-79 T 14-10-2018 YP_2153 3002732422cb89f114e1fea494c5e654 202 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 75 8.2E-13 T 14-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 YP_2153 3002732422cb89f114e1fea494c5e654 202 SUPERFAMILY SSF52833 2 80 4.17E-20 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_2153 3002732422cb89f114e1fea494c5e654 202 SUPERFAMILY SSF47616 85 200 3.06E-27 T 14-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YP_2153 3002732422cb89f114e1fea494c5e654 202 Gene3D G3DSA:1.20.1050.10 83 189 6.0E-79 T 14-10-2018 YP_3143 8dea072c2c76b963285744c559e087f8 330 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 302 4.1E-42 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_3886 1c143fe2d9eb4b7125ff233bac97f673 150 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 150 74.394 T 14-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 YP_3886 1c143fe2d9eb4b7125ff233bac97f673 150 SUPERFAMILY SSF52304 6 148 1.1E-61 T 14-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 YP_3886 1c143fe2d9eb4b7125ff233bac97f673 150 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 21 150 2.0E-71 T 14-10-2018 YP_3886 1c143fe2d9eb4b7125ff233bac97f673 150 Gene3D G3DSA:3.40.50.9100 1 150 1.2E-68 T 14-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 YP_3886 1c143fe2d9eb4b7125ff233bac97f673 150 ProSitePatterns PS01029 Dehydroquinase class II signature. 10 27 - T 14-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 YP_3886 1c143fe2d9eb4b7125ff233bac97f673 150 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 6 145 2.9E-61 T 14-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 YP_3886 1c143fe2d9eb4b7125ff233bac97f673 150 PIRSF PIRSF001399 3 149 5.7E-59 T 14-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 YP_3886 1c143fe2d9eb4b7125ff233bac97f673 150 Pfam PF01220 Dehydroquinase class II 7 142 6.2E-61 T 14-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 YP_1032 2255c01ecde5a06234959dd5985acf4f 430 Gene3D G3DSA:2.120.10.30 165 430 1.3E-115 T 14-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like YP_1032 2255c01ecde5a06234959dd5985acf4f 430 Gene3D G3DSA:3.40.50.10070 19 164 6.6E-54 T 14-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 YP_1032 2255c01ecde5a06234959dd5985acf4f 430 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 14 427 2.9E-160 T 14-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 YP_1032 2255c01ecde5a06234959dd5985acf4f 430 SUPERFAMILY SSF69304 155 428 9.15E-58 T 14-10-2018 YP_1032 2255c01ecde5a06234959dd5985acf4f 430 Pfam PF07676 WD40-like Beta Propeller Repeat 377 398 0.018 T 14-10-2018 IPR011659 WD40-like Beta Propeller YP_1032 2255c01ecde5a06234959dd5985acf4f 430 Pfam PF07676 WD40-like Beta Propeller Repeat 237 272 1.9E-9 T 14-10-2018 IPR011659 WD40-like Beta Propeller YP_1032 2255c01ecde5a06234959dd5985acf4f 430 Pfam PF07676 WD40-like Beta Propeller Repeat 199 223 2.0E-5 T 14-10-2018 IPR011659 WD40-like Beta Propeller YP_1032 2255c01ecde5a06234959dd5985acf4f 430 Pfam PF07676 WD40-like Beta Propeller Repeat 282 315 9.3E-10 T 14-10-2018 IPR011659 WD40-like Beta Propeller YP_1032 2255c01ecde5a06234959dd5985acf4f 430 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 4 426 49.944 T 14-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 YP_1032 2255c01ecde5a06234959dd5985acf4f 430 Pfam PF04052 TolB amino-terminal domain 23 122 1.7E-32 T 14-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 YP_1032 2255c01ecde5a06234959dd5985acf4f 430 SUPERFAMILY SSF52964 28 161 1.12E-40 T 14-10-2018 YP_0198 d6cc21370f7619b78754c5bf8975bc98 95 Gene3D G3DSA:3.40.1260.10 1 95 2.1E-30 T 14-10-2018 IPR027396 DsrEFH-like YP_0198 d6cc21370f7619b78754c5bf8975bc98 95 Pfam PF04077 DsrH like protein 7 92 3.8E-29 T 14-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 YP_0198 d6cc21370f7619b78754c5bf8975bc98 95 Hamap MF_01564 Protein TusB [tusB]. 1 95 29.501 T 14-10-2018 IPR023526 Sulphur relay, TusB GO:0002143|GO:0005737 YP_0198 d6cc21370f7619b78754c5bf8975bc98 95 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 2 95 2.0E-31 T 14-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 YP_0198 d6cc21370f7619b78754c5bf8975bc98 95 SUPERFAMILY SSF75169 1 95 9.42E-31 T 14-10-2018 IPR027396 DsrEFH-like YP_0172 83f04c45cddd652459bd84a777ac0e0c 409 Gene3D G3DSA:3.90.1150.10 33 396 2.3E-156 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_0172 83f04c45cddd652459bd84a777ac0e0c 409 Gene3D G3DSA:3.40.640.10 63 308 2.3E-156 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_0172 83f04c45cddd652459bd84a777ac0e0c 409 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 226 263 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_0172 83f04c45cddd652459bd84a777ac0e0c 409 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 20 403 3.5E-153 T 14-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 YP_0172 83f04c45cddd652459bd84a777ac0e0c 409 SUPERFAMILY SSF53383 21 403 3.32E-127 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_0172 83f04c45cddd652459bd84a777ac0e0c 409 Pfam PF00202 Aminotransferase class-III 28 402 1.5E-136 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_0172 83f04c45cddd652459bd84a777ac0e0c 409 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 19 406 72.241 T 14-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 YP_0172 83f04c45cddd652459bd84a777ac0e0c 409 PIRSF PIRSF000521 177 406 4.1E-35 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_0172 83f04c45cddd652459bd84a777ac0e0c 409 PIRSF PIRSF000521 31 160 6.6E-7 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_0172 83f04c45cddd652459bd84a777ac0e0c 409 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 11 406 1.8E-208 T 14-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 YP_2692 16e783fe74f9027a4b849ed495bc583a 152 Gene3D G3DSA:3.40.30.10 33 152 1.3E-51 T 14-10-2018 YP_2692 16e783fe74f9027a4b849ed495bc583a 152 SUPERFAMILY SSF52833 37 151 1.08E-35 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_2692 16e783fe74f9027a4b849ed495bc583a 152 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 38 151 2.2E-47 T 14-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 YP_2692 16e783fe74f9027a4b849ed495bc583a 152 Pfam PF03960 ArsC family 41 150 1.6E-22 T 14-10-2018 IPR006660 Arsenate reductase-like YP_1678 8a18618d6e9aec99b05334d06f0fddc1 395 Gene3D G3DSA:3.90.1150.10 31 388 7.5E-107 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_1678 8a18618d6e9aec99b05334d06f0fddc1 395 SUPERFAMILY SSF53383 16 394 4.3E-84 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_1678 8a18618d6e9aec99b05334d06f0fddc1 395 Pfam PF00155 Aminotransferase class I and II 64 384 9.5E-31 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YP_1678 8a18618d6e9aec99b05334d06f0fddc1 395 Gene3D G3DSA:3.40.640.10 72 285 7.5E-107 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_3253 650a1fc6a9a5499992aeafdf8c2899be 439 Gene3D G3DSA:3.40.190.10 31 385 2.6E-164 T 14-10-2018 YP_3253 650a1fc6a9a5499992aeafdf8c2899be 439 Gene3D G3DSA:3.40.190.10 147 425 2.6E-164 T 14-10-2018 YP_3253 650a1fc6a9a5499992aeafdf8c2899be 439 Pfam PF13416 Bacterial extracellular solute-binding protein 46 359 2.1E-41 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein YP_3253 650a1fc6a9a5499992aeafdf8c2899be 439 SUPERFAMILY SSF53850 27 426 2.33E-72 T 14-10-2018 YP_3253 650a1fc6a9a5499992aeafdf8c2899be 439 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 142 159 - T 14-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 YP_2388 afd5a9953aee8dc9b34ecbb49c298b39 238 SUPERFAMILY SSF161098 17 214 1.96E-37 T 14-10-2018 IPR035906 MetI-like superfamily YP_2388 afd5a9953aee8dc9b34ecbb49c298b39 238 Gene3D G3DSA:1.10.3720.10 8 229 1.8E-42 T 14-10-2018 IPR035906 MetI-like superfamily YP_2388 afd5a9953aee8dc9b34ecbb49c298b39 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 227 7.7E-15 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2388 afd5a9953aee8dc9b34ecbb49c298b39 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 21 122 1.7E-14 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YP_3270 a3d6826e5d0a2a10827181b175a7d273 543 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 6 445 1.0E-178 T 14-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 YP_3270 a3d6826e5d0a2a10827181b175a7d273 543 SUPERFAMILY SSF56112 94 435 1.59E-45 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily YP_3270 a3d6826e5d0a2a10827181b175a7d273 543 Pfam PF03109 ABC1 family 113 231 4.4E-34 T 14-10-2018 IPR004147 UbiB domain YP_3270 a3d6826e5d0a2a10827181b175a7d273 543 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 539 57.256 T 14-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 YP_2129 19b5be6763f985af313be810dc83396e 191 Hamap MF_00269 Thiol peroxidase [tpx]. 28 191 40.468 T 14-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 YP_2129 19b5be6763f985af313be810dc83396e 191 ProSitePatterns PS01265 Tpx family signature. 108 119 - T 14-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 YP_2129 19b5be6763f985af313be810dc83396e 191 Gene3D G3DSA:3.40.30.10 24 191 3.3E-49 T 14-10-2018 YP_2129 19b5be6763f985af313be810dc83396e 191 Pfam PF08534 Redoxin 45 187 4.5E-29 T 14-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 YP_2129 19b5be6763f985af313be810dc83396e 191 SUPERFAMILY SSF52833 28 188 3.24E-44 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_1958 ade3406733fb9740e9a419408ad48a14 156 Pfam PF01641 SelR domain 31 146 4.7E-52 T 14-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 YP_1958 ade3406733fb9740e9a419408ad48a14 156 Gene3D G3DSA:2.170.150.20 23 155 1.8E-59 T 14-10-2018 YP_1958 ade3406733fb9740e9a419408ad48a14 156 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 27 154 8.9E-60 T 14-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 YP_1958 ade3406733fb9740e9a419408ad48a14 156 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 17 148 37.209 T 14-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 YP_1958 ade3406733fb9740e9a419408ad48a14 156 SUPERFAMILY SSF51316 25 152 1.41E-57 T 14-10-2018 IPR011057 Mss4-like superfamily YP_3181 1e93a57e5dd9843155f50bf2d8c37a94 394 Gene3D G3DSA:3.40.50.2000 20 385 3.9E-155 T 14-10-2018 YP_3181 1e93a57e5dd9843155f50bf2d8c37a94 394 SUPERFAMILY SSF53756 19 390 2.13E-142 T 14-10-2018 YP_3181 1e93a57e5dd9843155f50bf2d8c37a94 394 Gene3D G3DSA:3.40.50.2000 205 374 3.9E-155 T 14-10-2018 YP_3181 1e93a57e5dd9843155f50bf2d8c37a94 394 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 40 388 2.2E-126 T 14-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YP_3181 1e93a57e5dd9843155f50bf2d8c37a94 394 Hamap MF_02028 UDP-N-acetylglucosamine 2-epimerase [wecB]. 34 392 67.693 T 14-10-2018 IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB GO:0008761|GO:0009246 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 YP_3181 1e93a57e5dd9843155f50bf2d8c37a94 394 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 19 390 6.8E-169 T 14-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 YP_1270 beaa542a73707837fed34ac4e1a12f93 219 SUPERFAMILY SSF100950 41 200 1.02E-24 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_1270 beaa542a73707837fed34ac4e1a12f93 219 Pfam PF00455 DeoR C terminal sensor domain 42 200 7.8E-48 T 14-10-2018 IPR014036 DeoR C-terminal sensor domain YP_1270 beaa542a73707837fed34ac4e1a12f93 219 SMART SM01134 40 201 4.0E-63 T 14-10-2018 YP_2845 d96a48397f5668c1e45cc811a13fc28b 114 TIGRFAM TIGR01707 gspI: type II secretion system protein I 1 97 9.5E-18 T 14-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 YP_2845 d96a48397f5668c1e45cc811a13fc28b 114 SUPERFAMILY SSF54523 30 109 2.83E-21 T 14-10-2018 YP_2845 d96a48397f5668c1e45cc811a13fc28b 114 Pfam PF02501 Type II secretion system (T2SS), protein I 32 109 8.4E-19 T 14-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 YP_2845 d96a48397f5668c1e45cc811a13fc28b 114 Gene3D G3DSA:3.30.1300.30 22 110 2.3E-18 T 14-10-2018 YP_1283 b6fe9c8225165a59c033ffa61780e270 503 Pfam PF00324 Amino acid permease 25 478 5.4E-143 T 14-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 YP_1283 b6fe9c8225165a59c033ffa61780e270 503 PIRSF PIRSF006060 3 495 1.5E-82 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_1283 b6fe9c8225165a59c033ffa61780e270 503 Gene3D G3DSA:1.20.1740.10 16 485 2.3E-63 T 14-10-2018 YP_1283 b6fe9c8225165a59c033ffa61780e270 503 ProSitePatterns PS00218 Amino acid permeases signature. 50 81 - T 14-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 YP_1452 b2c7dbbdf5cd0b8425d7d2d20016587c 162 Pfam PF04134 Protein of unknown function, DUF393 37 146 8.1E-35 T 14-10-2018 IPR007263 Protein of unknown function DUF393 YP_2355 70e86819fcfe057ec7c5ec11e52aa48c 510 Pfam PF00361 Proton-conducting membrane transporter 134 431 1.8E-70 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2355 70e86819fcfe057ec7c5ec11e52aa48c 510 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 3 496 9.8E-182 T 14-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2355 70e86819fcfe057ec7c5ec11e52aa48c 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 249 273 9.4E-37 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2355 70e86819fcfe057ec7c5ec11e52aa48c 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 389 415 9.4E-37 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2355 70e86819fcfe057ec7c5ec11e52aa48c 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 9.4E-37 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2355 70e86819fcfe057ec7c5ec11e52aa48c 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 174 198 9.4E-37 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2355 70e86819fcfe057ec7c5ec11e52aa48c 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 337 356 9.4E-37 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2673 20c8aba404b21411c0eaab19685a8f19 166 Gene3D G3DSA:1.25.40.10 4 163 2.2E-19 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2673 20c8aba404b21411c0eaab19685a8f19 166 SUPERFAMILY SSF48452 17 132 1.9E-15 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2673 20c8aba404b21411c0eaab19685a8f19 166 Pfam PF12688 Tetratrico peptide repeat 44 162 9.0E-11 T 14-10-2018 YP_2498 f0d85210a9b45da57e3f59c54b0faf70 138 Pfam PF08349 Protein of unknown function (DUF1722) 19 135 1.9E-36 T 14-10-2018 IPR013560 Domain of unknown function DUF1722 YP_0088 23b76f1a8b2055247253a9fdd3e802db 431 SUPERFAMILY SSF46785 30 108 9.79E-16 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0088 23b76f1a8b2055247253a9fdd3e802db 431 Gene3D G3DSA:3.40.190.10 296 397 1.0E-47 T 14-10-2018 YP_0088 23b76f1a8b2055247253a9fdd3e802db 431 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 34 90 7.0E-13 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_0088 23b76f1a8b2055247253a9fdd3e802db 431 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 134 191 1.4E-12 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_0088 23b76f1a8b2055247253a9fdd3e802db 431 Pfam PF03466 LysR substrate binding domain 217 424 1.1E-28 T 14-10-2018 IPR005119 LysR, substrate-binding YP_0088 23b76f1a8b2055247253a9fdd3e802db 431 Gene3D G3DSA:1.10.10.10 131 212 2.3E-15 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0088 23b76f1a8b2055247253a9fdd3e802db 431 SUPERFAMILY SSF53850 218 427 1.43E-34 T 14-10-2018 YP_0088 23b76f1a8b2055247253a9fdd3e802db 431 SUPERFAMILY SSF46785 130 210 6.97E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0088 23b76f1a8b2055247253a9fdd3e802db 431 Gene3D G3DSA:3.40.190.10 223 414 1.0E-47 T 14-10-2018 YP_0088 23b76f1a8b2055247253a9fdd3e802db 431 Gene3D G3DSA:1.10.10.10 24 113 1.8E-17 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_pCD45 98c9d6062587fa694e7dcdfe844428b1 92 TIGRFAM TIGR02511 type_III_tyeA: type III secretion effector delivery regulator, TyeA family 3 84 1.6E-28 T 14-10-2018 IPR013351 Type III secretion system effector delivery regulator TyeA-related YP_pCD45 98c9d6062587fa694e7dcdfe844428b1 92 Gene3D G3DSA:1.20.1280.80 1 92 9.1E-42 T 14-10-2018 IPR038347 TyeA superfamily YP_pCD45 98c9d6062587fa694e7dcdfe844428b1 92 Pfam PF09059 TyeA 6 86 5.1E-33 T 14-10-2018 IPR015144 Type III secretion system effector delivery regulator TyeA YP_pCD45 98c9d6062587fa694e7dcdfe844428b1 92 SUPERFAMILY SSF140591 2 90 1.65E-29 T 14-10-2018 YP_pCD45 98c9d6062587fa694e7dcdfe844428b1 92 ProDom PD029314 TYEA PLASMID ACR1 SECRETION CONTROL TARGETING TYPE LSSA VP1666 TARGET 1 81 6.0E-43 T 14-10-2018 IPR015144 Type III secretion system effector delivery regulator TyeA YP_1707 5a5e9cb421dd698aa69070c5391e74ee 446 PIRSF PIRSF000521 55 195 2.1E-7 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_1707 5a5e9cb421dd698aa69070c5391e74ee 446 PIRSF PIRSF000521 211 440 9.1E-38 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_1707 5a5e9cb421dd698aa69070c5391e74ee 446 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 39 441 2.2E-225 T 14-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 YP_1707 5a5e9cb421dd698aa69070c5391e74ee 446 Hamap MF_01173 Succinylornithine transaminase [astC]. 35 446 76.525 T 14-10-2018 IPR026330 Succinylornithine transaminase GO:0006527|GO:0006593|GO:0043825 KEGG: 00330+2.6.1.81 YP_1707 5a5e9cb421dd698aa69070c5391e74ee 446 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 260 297 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_1707 5a5e9cb421dd698aa69070c5391e74ee 446 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 47 440 70.391 T 14-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 YP_1707 5a5e9cb421dd698aa69070c5391e74ee 446 Gene3D G3DSA:3.40.640.10 91 342 7.5E-153 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_1707 5a5e9cb421dd698aa69070c5391e74ee 446 Pfam PF00202 Aminotransferase class-III 56 433 2.3E-123 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_1707 5a5e9cb421dd698aa69070c5391e74ee 446 SUPERFAMILY SSF53383 48 434 4.95E-124 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_1707 5a5e9cb421dd698aa69070c5391e74ee 446 Gene3D G3DSA:3.90.1150.10 56 430 7.5E-153 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_1707 5a5e9cb421dd698aa69070c5391e74ee 446 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 47 435 3.0E-156 T 14-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 YP_0060 b8a91aa8e930841e5a69023b43341b1b 413 Pfam PF00155 Aminotransferase class I and II 58 402 5.9E-79 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YP_0060 b8a91aa8e930841e5a69023b43341b1b 413 SUPERFAMILY SSF53383 19 411 1.73E-126 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_0060 b8a91aa8e930841e5a69023b43341b1b 413 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 20 412 2.9E-216 T 14-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 YP_0060 b8a91aa8e930841e5a69023b43341b1b 413 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 17 410 53.416 T 14-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 YP_0060 b8a91aa8e930841e5a69023b43341b1b 413 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 256 265 - T 14-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 YP_0060 b8a91aa8e930841e5a69023b43341b1b 413 Gene3D G3DSA:3.40.640.10 73 311 1.3E-139 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_0060 b8a91aa8e930841e5a69023b43341b1b 413 Gene3D G3DSA:3.90.1150.10 53 403 1.3E-139 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_0371 dbec16b6eb5d2cfcec8866f17f70e536 381 Pfam PF02653 Branched-chain amino acid transport system / permease component 61 340 2.0E-49 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_2325 7ee279ec2c2abccee0c5121e9c47037a 167 PIRSF PIRSF005900 8 167 4.3E-41 T 14-10-2018 IPR002177 DNA-binding protein Dps YP_2325 7ee279ec2c2abccee0c5121e9c47037a 167 SUPERFAMILY SSF47240 10 167 1.13E-46 T 14-10-2018 IPR009078 Ferritin-like superfamily YP_2325 7ee279ec2c2abccee0c5121e9c47037a 167 Pfam PF00210 Ferritin-like domain 30 166 5.3E-21 T 14-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 YP_2325 7ee279ec2c2abccee0c5121e9c47037a 167 Gene3D G3DSA:1.20.1260.10 1 167 2.4E-52 T 14-10-2018 IPR012347 Ferritin-like YP_2325 7ee279ec2c2abccee0c5121e9c47037a 167 Hamap MF_01441 DNA protection during starvation protein [dps]. 1 167 44.955 T 14-10-2018 IPR023067 DNA protection during starvation protein, gammaproteobacteria GO:0016722|GO:0055114 YP_2325 7ee279ec2c2abccee0c5121e9c47037a 167 ProSitePatterns PS00818 Dps protein family signature 1. 51 67 - T 14-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 YP_2325 7ee279ec2c2abccee0c5121e9c47037a 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 75 91 2.4E-12 T 14-10-2018 IPR002177 DNA-binding protein Dps YP_2325 7ee279ec2c2abccee0c5121e9c47037a 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 51 67 2.4E-12 T 14-10-2018 IPR002177 DNA-binding protein Dps YP_2325 7ee279ec2c2abccee0c5121e9c47037a 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 144 162 2.4E-12 T 14-10-2018 IPR002177 DNA-binding protein Dps YP_1177 2caa3a1363b25107155743552f87a82f 183 Hamap MF_00906 Cell division protein ZapC [zapC]. 2 178 41.963 T 14-10-2018 IPR009809 Cell division protein ZapC YP_1177 2caa3a1363b25107155743552f87a82f 183 PIRSF PIRSF010252 1 179 2.4E-60 T 14-10-2018 IPR009809 Cell division protein ZapC YP_1177 2caa3a1363b25107155743552f87a82f 183 Pfam PF07126 Cell-division protein ZapC 3 169 2.6E-68 T 14-10-2018 IPR009809 Cell division protein ZapC YP_1538 52c0d7e4191344071e16f7a9a5710e48 384 Pfam PF09375 Imelysin 145 377 5.0E-45 T 14-10-2018 IPR018976 Imelysin-like domain YP_1538 52c0d7e4191344071e16f7a9a5710e48 384 Pfam PF13473 Cupredoxin-like domain 22 124 1.4E-23 T 14-10-2018 IPR028096 EfeO-type cupredoxin-like domain YP_1538 52c0d7e4191344071e16f7a9a5710e48 384 Gene3D G3DSA:1.20.1420.20 137 384 3.9E-99 T 14-10-2018 IPR038352 Imelysin-like domain superfamily YP_1538 52c0d7e4191344071e16f7a9a5710e48 384 Gene3D G3DSA:2.60.40.420 29 126 2.9E-5 T 14-10-2018 IPR008972 Cupredoxin YP_1538 52c0d7e4191344071e16f7a9a5710e48 384 SUPERFAMILY SSF49503 25 124 8.43E-7 T 14-10-2018 IPR008972 Cupredoxin YP_3597 2e4b837908402d398794323c9fe6ded8 233 Pfam PF03006 Haemolysin-III related 29 226 3.8E-38 T 14-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 YP_3597 2e4b837908402d398794323c9fe6ded8 233 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 32 233 4.6E-71 T 14-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 YP_3832 db1564a4363d856c5731ddb0de60dfc1 357 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 79 347 2.7E-122 T 14-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 YP_3832 db1564a4363d856c5731ddb0de60dfc1 357 Gene3D G3DSA:3.10.580.10 230 354 1.7E-47 T 14-10-2018 YP_3832 db1564a4363d856c5731ddb0de60dfc1 357 SMART SM00116 309 356 1.9 T 14-10-2018 IPR000644 CBS domain YP_3832 db1564a4363d856c5731ddb0de60dfc1 357 SMART SM00116 244 292 1.2 T 14-10-2018 IPR000644 CBS domain YP_3832 db1564a4363d856c5731ddb0de60dfc1 357 PIRSF PIRSF004692 17 357 4.3E-135 T 14-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 YP_3832 db1564a4363d856c5731ddb0de60dfc1 357 SUPERFAMILY SSF53697 43 354 2.45E-66 T 14-10-2018 YP_3832 db1564a4363d856c5731ddb0de60dfc1 357 Pfam PF00571 CBS domain 303 354 1.9E-6 T 14-10-2018 IPR000644 CBS domain YP_3832 db1564a4363d856c5731ddb0de60dfc1 357 Pfam PF00571 CBS domain 235 290 1.9E-7 T 14-10-2018 IPR000644 CBS domain YP_3832 db1564a4363d856c5731ddb0de60dfc1 357 Gene3D G3DSA:3.40.50.10490 40 229 3.6E-64 T 14-10-2018 YP_3832 db1564a4363d856c5731ddb0de60dfc1 357 Pfam PF01380 SIS domain 75 206 4.5E-30 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YP_1397 b42dc64d462131fa7aa5425c81f50c43 367 Pfam PF13407 Periplasmic binding protein domain 64 335 1.8E-63 T 14-10-2018 IPR025997 Periplasmic binding protein YP_1397 b42dc64d462131fa7aa5425c81f50c43 367 Gene3D G3DSA:3.40.50.2300 64 338 1.7E-122 T 14-10-2018 YP_1397 b42dc64d462131fa7aa5425c81f50c43 367 Gene3D G3DSA:3.40.50.2300 170 315 1.7E-122 T 14-10-2018 YP_1397 b42dc64d462131fa7aa5425c81f50c43 367 SUPERFAMILY SSF53822 62 366 4.91E-84 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_2357 2aa43b20da3c7458c4462c4b08fa1675 100 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 95 1.6E-22 T 14-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like YP_2357 2aa43b20da3c7458c4462c4b08fa1675 100 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 100 20.052 T 14-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 YP_1911 9df47ef683ab251cc33274c92911af5e 109 Gene3D G3DSA:1.10.3730.20 1 71 6.2E-20 T 14-10-2018 YP_1911 9df47ef683ab251cc33274c92911af5e 109 Pfam PF00893 Small Multidrug Resistance protein 2 55 2.5E-14 T 14-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 YP_1911 9df47ef683ab251cc33274c92911af5e 109 SUPERFAMILY SSF103481 2 69 3.79E-14 T 14-10-2018 YP_0321 aacf8b0209fb2666861e3a669070cfad 302 SUPERFAMILY SSF52402 6 209 1.01E-74 T 14-10-2018 YP_0321 aacf8b0209fb2666861e3a669070cfad 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 302 2.9E-166 T 14-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 YP_0321 aacf8b0209fb2666861e3a669070cfad 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 257 2.1E-64 T 14-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 YP_0321 aacf8b0209fb2666861e3a669070cfad 302 PIRSF PIRSF002936 1 302 5.6E-155 T 14-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 YP_0321 aacf8b0209fb2666861e3a669070cfad 302 Gene3D G3DSA:3.40.50.620 7 212 1.4E-64 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YP_0321 aacf8b0209fb2666861e3a669070cfad 302 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 302 58.492 T 14-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 YP_2030 824ebe1eafc90d1c7d3606d3eb2a56f8 82 Pfam PF09932 Uncharacterized conserved protein (DUF2164) 4 77 1.8E-26 T 14-10-2018 IPR018680 Protein of unknown function DUF2164 YP_0548 7eef70ecdafd1ad090ecfa4df6242a08 125 SUPERFAMILY SSF143422 1 102 1.57E-33 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0548 7eef70ecdafd1ad090ecfa4df6242a08 125 SMART SM01321 1 102 1.4E-23 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0548 7eef70ecdafd1ad090ecfa4df6242a08 125 Gene3D G3DSA:3.30.70.1290 1 114 2.5E-30 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YP_0548 7eef70ecdafd1ad090ecfa4df6242a08 125 Pfam PF01797 Transposase IS200 like 1 102 3.4E-26 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YP_0949 7406988ca2a81c7ffeea746708a8e1eb 432 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 41 414 2.9E-177 T 14-10-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like YP_0949 7406988ca2a81c7ffeea746708a8e1eb 432 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 63 79 7.0E-7 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YP_0949 7406988ca2a81c7ffeea746708a8e1eb 432 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 300 313 7.0E-7 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YP_0949 7406988ca2a81c7ffeea746708a8e1eb 432 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 104 114 7.0E-7 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YP_0949 7406988ca2a81c7ffeea746708a8e1eb 432 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 41 57 7.0E-7 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YP_0949 7406988ca2a81c7ffeea746708a8e1eb 432 Gene3D G3DSA:3.40.50.2300 156 405 5.3E-139 T 14-10-2018 YP_0949 7406988ca2a81c7ffeea746708a8e1eb 432 Gene3D G3DSA:3.40.50.2300 43 385 5.3E-139 T 14-10-2018 YP_0949 7406988ca2a81c7ffeea746708a8e1eb 432 Pfam PF13433 Periplasmic binding protein domain 41 416 1.2E-170 T 14-10-2018 YP_0949 7406988ca2a81c7ffeea746708a8e1eb 432 SUPERFAMILY SSF53822 40 418 1.41E-89 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_1769 dee16195010e0ca4b91cb0a443b34623 148 PRINTS PR00502 NUDIX hydrolase family signature 45 60 3.2E-5 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YP_1769 dee16195010e0ca4b91cb0a443b34623 148 PRINTS PR00502 NUDIX hydrolase family signature 31 45 3.2E-5 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YP_1769 dee16195010e0ca4b91cb0a443b34623 148 Pfam PF00293 NUDIX domain 4 114 8.2E-18 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YP_1769 dee16195010e0ca4b91cb0a443b34623 148 Gene3D G3DSA:3.90.79.10 1 148 4.0E-44 T 14-10-2018 YP_1769 dee16195010e0ca4b91cb0a443b34623 148 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YP_1769 dee16195010e0ca4b91cb0a443b34623 148 SUPERFAMILY SSF55811 2 132 5.42E-30 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YP_1025 5f3fe0ef4221de0a73519d9262a7433c 278 SUPERFAMILY SSF53254 32 275 5.39E-78 T 14-10-2018 IPR029033 Histidine phosphatase superfamily YP_1025 5f3fe0ef4221de0a73519d9262a7433c 278 PIRSF PIRSF000709 200 264 0.087 T 14-10-2018 YP_1025 5f3fe0ef4221de0a73519d9262a7433c 278 PIRSF PIRSF000709 2 144 2.5E-9 T 14-10-2018 YP_1025 5f3fe0ef4221de0a73519d9262a7433c 278 Gene3D G3DSA:3.40.50.1240 30 278 1.8E-92 T 14-10-2018 IPR029033 Histidine phosphatase superfamily YP_1025 5f3fe0ef4221de0a73519d9262a7433c 278 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 36 45 - T 14-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 YP_1025 5f3fe0ef4221de0a73519d9262a7433c 278 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 31 258 46.166 T 14-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 YP_1025 5f3fe0ef4221de0a73519d9262a7433c 278 SMART SM00855 33 219 9.7E-28 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 YP_1025 5f3fe0ef4221de0a73519d9262a7433c 278 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 34 156 2.5E-30 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 YP_1025 5f3fe0ef4221de0a73519d9262a7433c 278 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 33 276 2.7E-126 T 14-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 YP_2943 fb6b95c54e77a87c52c7e28840c28bc7 207 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 3 112 1.0E-59 T 14-10-2018 IPR013559 YheO-like YP_2943 fb6b95c54e77a87c52c7e28840c28bc7 207 Pfam PF08348 YheO-like PAS domain 8 120 1.8E-39 T 14-10-2018 IPR013559 YheO-like YP_3413 bf738be4a9e5bd9886c91ec75bca533d 496 Pfam PF07906 ShET2 enterotoxin, N-terminal region 8 294 2.3E-109 T 14-10-2018 IPR012927 ShET2 enterotoxin, N-terminal YP_3342 4489ea4e6f59eb0e9a87cbc80dd7e499 422 Pfam PF02447 GntP family permease 8 415 4.9E-25 T 14-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 YP_pCRY01 dbef13c6f179c72780bc57e185be51d1 237 Pfam PF02387 IncFII RepA protein family 56 228 1.1E-15 T 14-10-2018 IPR003446 Plasmid replication initiation, RepA GO:0006276 YP_0395 34dabe838becdcfa13205d1c7e1ba07c 270 Pfam PF04338 Protein of unknown function, DUF481 65 269 2.4E-56 T 14-10-2018 IPR007433 Protein of unknown function DUF481 YP_1709 b9c37fe670c8ef716d2de0942868dc40 505 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 17 500 1.0E-263 T 14-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 YP_1709 b9c37fe670c8ef716d2de0942868dc40 505 Gene3D G3DSA:3.40.309.10 261 451 1.7E-141 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YP_1709 b9c37fe670c8ef716d2de0942868dc40 505 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 284 295 - T 14-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 YP_1709 b9c37fe670c8ef716d2de0942868dc40 505 Gene3D G3DSA:3.40.605.10 21 463 1.7E-141 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YP_1709 b9c37fe670c8ef716d2de0942868dc40 505 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 256 263 - T 14-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 YP_1709 b9c37fe670c8ef716d2de0942868dc40 505 SUPERFAMILY SSF53720 13 469 2.09E-120 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YP_1709 b9c37fe670c8ef716d2de0942868dc40 505 Pfam PF00171 Aldehyde dehydrogenase family 28 472 9.1E-119 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YP_1709 b9c37fe670c8ef716d2de0942868dc40 505 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 15 500 58.288 T 14-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 YP_pCD49 ef26c94a10a90904e1d0511665c79332 704 Gene3D G3DSA:1.10.8.540 514 602 7.1E-32 T 14-10-2018 YP_pCD49 ef26c94a10a90904e1d0511665c79332 704 Pfam PF00771 FHIPEP family 27 694 1.6E-237 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_pCD49 ef26c94a10a90904e1d0511665c79332 704 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 138 161 - T 14-10-2018 IPR025505 FHIPEP conserved site YP_pCD49 ef26c94a10a90904e1d0511665c79332 704 TIGRFAM TIGR01399 hrcV: type III secretion protein, HrcV family 15 702 0.0 T 14-10-2018 IPR006302 Type III secretion protein HrcV GO:0015031|GO:0016021 YP_pCD49 ef26c94a10a90904e1d0511665c79332 704 Gene3D G3DSA:3.40.30.60 368 513 7.4E-41 T 14-10-2018 YP_pCD49 ef26c94a10a90904e1d0511665c79332 704 PIRSF PIRSF005419 4 704 8.2E-263 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_pCD49 ef26c94a10a90904e1d0511665c79332 704 Gene3D G3DSA:1.10.490.80 604 702 2.6E-33 T 14-10-2018 YP_pCD49 ef26c94a10a90904e1d0511665c79332 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 233 247 3.6E-58 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_pCD49 ef26c94a10a90904e1d0511665c79332 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 34 47 3.6E-58 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_pCD49 ef26c94a10a90904e1d0511665c79332 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 71 90 3.6E-58 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_pCD49 ef26c94a10a90904e1d0511665c79332 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 133 149 3.6E-58 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_pCD49 ef26c94a10a90904e1d0511665c79332 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 182 199 3.6E-58 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_pCD49 ef26c94a10a90904e1d0511665c79332 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 152 170 3.6E-58 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YP_0988 5611fe217a8dd6e3d3ede734a22df0c2 287 SUPERFAMILY SSF53167 20 283 4.19E-81 T 14-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 YP_0988 5611fe217a8dd6e3d3ede734a22df0c2 287 TIGRFAM TIGR01700 PNPH: purine nucleoside phosphorylase I, inosine and guanosine-specific 35 280 3.8E-89 T 14-10-2018 IPR011270 Purine nucleoside phosphorylase I, inosine/guanosine-specific GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 YP_0988 5611fe217a8dd6e3d3ede734a22df0c2 287 PIRSF PIRSF000477 7 284 3.7E-111 T 14-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 YP_0988 5611fe217a8dd6e3d3ede734a22df0c2 287 Pfam PF01048 Phosphorylase superfamily 36 282 4.5E-41 T 14-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 YP_0988 5611fe217a8dd6e3d3ede734a22df0c2 287 Gene3D G3DSA:3.40.50.1580 1 287 7.9E-114 T 14-10-2018 YP_0988 5611fe217a8dd6e3d3ede734a22df0c2 287 TIGRFAM TIGR01699 XAPA: xanthosine phosphorylase 35 282 6.0E-165 T 14-10-2018 IPR010943 Xanthosine phosphorylase GO:0004731|GO:0005737|GO:0055086 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 YP_0988 5611fe217a8dd6e3d3ede734a22df0c2 287 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 35 281 3.0E-103 T 14-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 YP_0846 19d0596f39a096726ebe2c59361e91fe 813 Pfam PF02687 FtsX-like permease family 718 804 1.7E-7 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 YP_0689 da14512ba6efc01adf70c8e7b9361a64 193 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 38.677 T 14-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 YP_0689 da14512ba6efc01adf70c8e7b9361a64 193 SUPERFAMILY SSF53697 1 189 2.43E-52 T 14-10-2018 YP_0689 da14512ba6efc01adf70c8e7b9361a64 193 Pfam PF13580 SIS domain 14 146 9.4E-32 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YP_0689 da14512ba6efc01adf70c8e7b9361a64 193 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 35 187 2.9E-84 T 14-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 YP_0689 da14512ba6efc01adf70c8e7b9361a64 193 Gene3D G3DSA:3.40.50.10490 1 192 2.5E-72 T 14-10-2018 YP_2793 89e2bb4a240f157a1d04fbd38e1cd106 394 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 17 393 42.183 T 14-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 YP_2793 89e2bb4a240f157a1d04fbd38e1cd106 394 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 15 391 1.4E-171 T 14-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 YP_2793 89e2bb4a240f157a1d04fbd38e1cd106 394 SUPERFAMILY SSF53756 20 357 1.75E-24 T 14-10-2018 YP_2793 89e2bb4a240f157a1d04fbd38e1cd106 394 Pfam PF02684 Lipid-A-disaccharide synthetase 20 388 3.6E-142 T 14-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 YP_3881 848518961cfbdb5db3798bf3ff69c37b 347 SUPERFAMILY SSF53067 153 340 4.08E-50 T 14-10-2018 YP_3881 848518961cfbdb5db3798bf3ff69c37b 347 Pfam PF06723 MreB/Mbl protein 11 338 9.8E-150 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 YP_3881 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 1.2E-65 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 YP_3881 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 211 1.2E-65 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 YP_3881 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 1.2E-65 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 YP_3881 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 136 155 1.2E-65 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 YP_3881 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 304 330 1.2E-65 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 YP_3881 848518961cfbdb5db3798bf3ff69c37b 347 SUPERFAMILY SSF53067 9 152 8.89E-38 T 14-10-2018 YP_3881 848518961cfbdb5db3798bf3ff69c37b 347 Gene3D G3DSA:3.30.420.40 158 321 6.2E-130 T 14-10-2018 YP_3881 848518961cfbdb5db3798bf3ff69c37b 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 9.1E-170 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 YP_3881 848518961cfbdb5db3798bf3ff69c37b 347 Gene3D G3DSA:3.30.420.40 14 331 6.2E-130 T 14-10-2018 YP_3881 848518961cfbdb5db3798bf3ff69c37b 347 Gene3D G3DSA:3.90.640.10 190 263 6.2E-130 T 14-10-2018 YP_3083 200ea5f9d209848117cf6aa7c3bd5ecd 1654 Pfam PF13332 Haemagluttinin repeat 1055 1185 7.3E-12 T 14-10-2018 IPR025157 Hemagglutinin repeat YP_3083 200ea5f9d209848117cf6aa7c3bd5ecd 1654 Pfam PF13332 Haemagluttinin repeat 507 577 0.0053 T 14-10-2018 IPR025157 Hemagglutinin repeat YP_3083 200ea5f9d209848117cf6aa7c3bd5ecd 1654 Pfam PF13332 Haemagluttinin repeat 430 489 1.0E-5 T 14-10-2018 IPR025157 Hemagglutinin repeat YP_3083 200ea5f9d209848117cf6aa7c3bd5ecd 1654 Pfam PF13332 Haemagluttinin repeat 583 646 0.0013 T 14-10-2018 IPR025157 Hemagglutinin repeat YP_3083 200ea5f9d209848117cf6aa7c3bd5ecd 1654 Pfam PF13332 Haemagluttinin repeat 1252 1425 3.0E-33 T 14-10-2018 IPR025157 Hemagglutinin repeat YP_3083 200ea5f9d209848117cf6aa7c3bd5ecd 1654 Pfam PF13332 Haemagluttinin repeat 838 925 2.7E-5 T 14-10-2018 IPR025157 Hemagglutinin repeat YP_3083 200ea5f9d209848117cf6aa7c3bd5ecd 1654 Pfam PF13332 Haemagluttinin repeat 658 817 3.6E-18 T 14-10-2018 IPR025157 Hemagglutinin repeat YP_3083 200ea5f9d209848117cf6aa7c3bd5ecd 1654 Pfam PF05860 haemagglutination activity domain 66 186 9.6E-29 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YP_3083 200ea5f9d209848117cf6aa7c3bd5ecd 1654 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 85 175 1.2E-16 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YP_3083 200ea5f9d209848117cf6aa7c3bd5ecd 1654 SMART SM00912 67 187 4.2E-43 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YP_3083 200ea5f9d209848117cf6aa7c3bd5ecd 1654 Gene3D G3DSA:2.160.20.10 51 311 1.8E-75 T 14-10-2018 IPR012334 Pectin lyase fold YP_3083 200ea5f9d209848117cf6aa7c3bd5ecd 1654 SUPERFAMILY SSF51126 67 351 1.35E-54 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor YP_1441 e1d7a3da24dac2925053ba157a96ed51 144 Gene3D G3DSA:1.20.120.1620 44 143 3.1E-32 T 14-10-2018 IPR038314 T6SS superfamily YP_1441 e1d7a3da24dac2925053ba157a96ed51 144 Pfam PF16695 Type VI secretion system (T6SS), amidase immunity protein 54 135 1.2E-13 T 14-10-2018 IPR032032 Type VI secretion system (T6SS), amidase immunity protein YP_2706 370f2351a8f3fe8206c61b7187c3b58e 491 Gene3D G3DSA:3.10.580.10 175 301 2.3E-40 T 14-10-2018 YP_2706 370f2351a8f3fe8206c61b7187c3b58e 491 SMART SM00924 75 178 3.4E-31 T 14-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain YP_2706 370f2351a8f3fe8206c61b7187c3b58e 491 TIGRFAM TIGR00400 mgtE: magnesium transporter 63 490 1.8E-77 T 14-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 YP_2706 370f2351a8f3fe8206c61b7187c3b58e 491 Pfam PF03448 MgtE intracellular N domain 75 175 6.3E-23 T 14-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain YP_2706 370f2351a8f3fe8206c61b7187c3b58e 491 SUPERFAMILY SSF54631 177 316 1.3E-24 T 14-10-2018 YP_2706 370f2351a8f3fe8206c61b7187c3b58e 491 SUPERFAMILY SSF158791 57 173 1.26E-22 T 14-10-2018 YP_2706 370f2351a8f3fe8206c61b7187c3b58e 491 Gene3D G3DSA:1.10.357.20 317 491 2.8E-47 T 14-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain YP_2706 370f2351a8f3fe8206c61b7187c3b58e 491 Pfam PF01769 Divalent cation transporter 362 483 1.1E-23 T 14-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 YP_2706 370f2351a8f3fe8206c61b7187c3b58e 491 SUPERFAMILY SSF161093 319 490 1.28E-47 T 14-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 YP_2706 370f2351a8f3fe8206c61b7187c3b58e 491 Gene3D G3DSA:1.25.60.10 50 173 8.1E-16 T 14-10-2018 IPR038076 MgtE, N-terminal domain superfamily YP_2706 370f2351a8f3fe8206c61b7187c3b58e 491 Pfam PF00571 CBS domain 242 296 4.9E-5 T 14-10-2018 IPR000644 CBS domain YP_2127 263c7d14007c84c2534f4e9b3340f1c6 256 SUPERFAMILY SSF53187 28 244 4.3E-34 T 14-10-2018 YP_2127 263c7d14007c84c2534f4e9b3340f1c6 256 Gene3D G3DSA:3.40.630.10 22 256 9.3E-56 T 14-10-2018 YP_2127 263c7d14007c84c2534f4e9b3340f1c6 256 Pfam PF00246 Zinc carboxypeptidase 35 178 1.3E-13 T 14-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 YP_1326 c820262d696b6c623331f6cf718b97ef 353 Pfam PF01389 OmpA-like transmembrane domain 23 200 6.0E-68 T 14-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 YP_1326 c820262d696b6c623331f6cf718b97ef 353 ProSitePatterns PS01068 OmpA-like domain. 264 308 - T 14-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 YP_1326 c820262d696b6c623331f6cf718b97ef 353 Gene3D G3DSA:2.40.160.20 22 198 9.1E-70 T 14-10-2018 YP_1326 c820262d696b6c623331f6cf718b97ef 353 Gene3D G3DSA:3.30.1330.60 206 350 4.6E-54 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_1326 c820262d696b6c623331f6cf718b97ef 353 SUPERFAMILY SSF103088 217 341 1.96E-32 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_1326 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01022 Outer membrane protein A signature 247 266 5.9E-63 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 YP_1326 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01022 Outer membrane protein A signature 108 124 5.9E-63 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 YP_1326 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01022 Outer membrane protein A signature 320 333 5.9E-63 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 YP_1326 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01022 Outer membrane protein A signature 185 199 5.9E-63 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 YP_1326 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01022 Outer membrane protein A signature 171 185 5.9E-63 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 YP_1326 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01022 Outer membrane protein A signature 286 305 5.9E-63 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 YP_1326 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01022 Outer membrane protein A signature 218 233 5.9E-63 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 YP_1326 c820262d696b6c623331f6cf718b97ef 353 Pfam PF00691 OmpA family 229 322 6.2E-19 T 14-10-2018 IPR006665 OmpA-like domain YP_1326 c820262d696b6c623331f6cf718b97ef 353 SUPERFAMILY SSF56925 22 200 1.33E-40 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_1326 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01021 OMPA domain signature 230 252 1.4E-20 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YP_1326 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01021 OMPA domain signature 277 293 1.4E-20 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YP_1326 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01021 OMPA domain signature 262 277 1.4E-20 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YP_1005 e56da8bad9c8ceb97213fb4c79c37654 236 SMART SM00382 26 218 4.2E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1005 e56da8bad9c8ceb97213fb4c79c37654 236 Gene3D G3DSA:3.40.50.300 1 232 2.0E-51 T 14-10-2018 YP_1005 e56da8bad9c8ceb97213fb4c79c37654 236 Pfam PF00005 ABC transporter 19 164 1.1E-23 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1005 e56da8bad9c8ceb97213fb4c79c37654 236 SUPERFAMILY SSF52540 2 227 5.33E-51 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2723 8da7926aa16d62af5849f2fcd3734a99 169 Gene3D G3DSA:3.40.1420.10 42 169 6.5E-46 T 14-10-2018 IPR036501 Inhibitor of vertebrate lysozyme superfamily YP_2723 8da7926aa16d62af5849f2fcd3734a99 169 PIRSF PIRSF009103 15 169 6.2E-67 T 14-10-2018 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 YP_2723 8da7926aa16d62af5849f2fcd3734a99 169 SUPERFAMILY SSF89872 43 168 3.01E-51 T 14-10-2018 IPR036501 Inhibitor of vertebrate lysozyme superfamily YP_2723 8da7926aa16d62af5849f2fcd3734a99 169 Pfam PF08816 Inhibitor of vertebrate lysozyme (Ivy) 52 167 3.0E-50 T 14-10-2018 YP_1981 a0510fcc7e2bcf65ad0ba5773b891e7c 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 299 3.2E-26 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1981 a0510fcc7e2bcf65ad0ba5773b891e7c 301 SUPERFAMILY SSF161098 99 282 1.96E-23 T 14-10-2018 IPR035906 MetI-like superfamily YP_1981 a0510fcc7e2bcf65ad0ba5773b891e7c 301 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 23 70 1.3E-13 T 14-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YP_1981 a0510fcc7e2bcf65ad0ba5773b891e7c 301 Gene3D G3DSA:1.10.3720.10 99 297 1.3E-16 T 14-10-2018 IPR035906 MetI-like superfamily YP_2265 45fc8f8325566646535f05fa453694dc 348 Pfam PF01979 Amidohydrolase family 15 307 2.5E-19 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 YP_2265 45fc8f8325566646535f05fa453694dc 348 Hamap MF_00219 Dihydroorotase [pyrC]. 6 347 46.981 T 14-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_2265 45fc8f8325566646535f05fa453694dc 348 ProSitePatterns PS00483 Dihydroorotase signature 2. 249 260 - T 14-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_2265 45fc8f8325566646535f05fa453694dc 348 PIRSF PIRSF001237 4 348 3.9E-141 T 14-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_2265 45fc8f8325566646535f05fa453694dc 348 SUPERFAMILY SSF51556 6 347 1.33E-145 T 14-10-2018 IPR032466 Metal-dependent hydrolase YP_2265 45fc8f8325566646535f05fa453694dc 348 Gene3D G3DSA:3.20.20.140 6 348 2.7E-105 T 14-10-2018 YP_2265 45fc8f8325566646535f05fa453694dc 348 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 8 347 2.8E-150 T 14-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YP_3469 65282723916bb7a4008f96d61491dc1c 740 Gene3D G3DSA:2.70.70.10 20 167 3.3E-9 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_3469 65282723916bb7a4008f96d61491dc1c 740 SUPERFAMILY SSF53955 494 717 1.01E-6 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_2292 12754ae0c65055c3249493a150006232 312 Pfam PF08950 Protein of unknown function (DUF1861) 22 310 8.6E-126 T 14-10-2018 IPR015045 Protein of unknown function DUF1861 YP_2292 12754ae0c65055c3249493a150006232 312 SUPERFAMILY SSF75005 23 310 7.85E-58 T 14-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily YP_2292 12754ae0c65055c3249493a150006232 312 Gene3D G3DSA:2.115.10.20 15 311 3.8E-113 T 14-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily YP_2354 21febf70dbd4d0178cb024a55c80ac63 487 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 9 477 1.2E-132 T 14-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 YP_2354 21febf70dbd4d0178cb024a55c80ac63 487 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 477 17.725 T 14-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 YP_2354 21febf70dbd4d0178cb024a55c80ac63 487 Pfam PF00361 Proton-conducting membrane transporter 122 422 9.5E-81 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_0299 976eab8c17a98cb7abfb10472e2d6e38 220 Pfam PF03458 UPF0126 domain 108 177 1.4E-19 T 14-10-2018 IPR005115 Uncharacterised domain UPF0126 YP_0299 976eab8c17a98cb7abfb10472e2d6e38 220 Pfam PF03458 UPF0126 domain 20 94 1.6E-22 T 14-10-2018 IPR005115 Uncharacterised domain UPF0126 YP_2455 e563a6f4787aff14989ee4e53d439fde 111 Gene3D G3DSA:3.90.1150.40 1 111 4.4E-56 T 14-10-2018 YP_2455 e563a6f4787aff14989ee4e53d439fde 111 SUPERFAMILY SSF159894 1 111 1.33E-56 T 14-10-2018 YP_2455 e563a6f4787aff14989ee4e53d439fde 111 Pfam PF09400 Protein of unknown function (DUF2002) 1 110 8.1E-55 T 14-10-2018 IPR018994 Protein of unknown function DUF2002 YP_0830 93695ae776dd676e12c384368407206c 383 Gene3D G3DSA:3.30.1890.10 67 333 6.0E-90 T 14-10-2018 YP_0830 93695ae776dd676e12c384368407206c 383 SUPERFAMILY SSF160355 67 333 3.79E-81 T 14-10-2018 YP_0830 93695ae776dd676e12c384368407206c 383 Pfam PF02706 Chain length determinant protein 28 125 6.7E-22 T 14-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 YP_0830 93695ae776dd676e12c384368407206c 383 Gene3D G3DSA:1.10.287.210 210 320 6.0E-90 T 14-10-2018 YP_2149 446bc755c180f92f4caa8f7d245c3e85 426 Gene3D G3DSA:1.20.1290.10 125 231 1.6E-5 T 14-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 YP_2149 446bc755c180f92f4caa8f7d245c3e85 426 SUPERFAMILY SSF69118 282 425 1.44E-22 T 14-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 YP_2149 446bc755c180f92f4caa8f7d245c3e85 426 SUPERFAMILY SSF69118 92 229 2.45E-12 T 14-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 YP_2149 446bc755c180f92f4caa8f7d245c3e85 426 Gene3D G3DSA:1.20.1290.10 309 426 6.1E-21 T 14-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 YP_1185 72e2c11b3421f3a80ce7600f89cb8355 182 SUPERFAMILY SSF55166 66 182 1.07E-30 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YP_1185 72e2c11b3421f3a80ce7600f89cb8355 182 Gene3D G3DSA:3.30.1380.10 60 182 2.2E-11 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YP_1185 72e2c11b3421f3a80ce7600f89cb8355 182 Pfam PF05951 Bacterial protein of unknown function (DUF882) 34 182 1.4E-60 T 14-10-2018 IPR010275 Protein of unknown function DUF882 YP_1281 afa58f0ebc8cdbbac642fd1e7d90082d 360 Gene3D G3DSA:1.10.3470.10 27 359 3.4E-97 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_1281 afa58f0ebc8cdbbac642fd1e7d90082d 360 Pfam PF01032 FecCD transport family 42 355 1.4E-84 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YP_1281 afa58f0ebc8cdbbac642fd1e7d90082d 360 SUPERFAMILY SSF81345 24 355 2.88E-78 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_pCD07 7a9a3f72178b7c48aed7409355985601 24 Pfam PF08048 Tap RepA1 leader peptide 1 24 8.5E-17 T 14-10-2018 IPR012605 RepA1 leader peptide Tap YP_pCD07 7a9a3f72178b7c48aed7409355985601 24 TIGRFAM TIGR03475 tap_IncFII_lead: RepA leader peptide Tap 1 24 1.3E-17 T 14-10-2018 IPR012605 RepA1 leader peptide Tap YP_3773 d5e08606a1a56b5c1275025c90beba40 291 Pfam PF01791 DeoC/LacD family aldolase 51 258 1.5E-18 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YP_3773 d5e08606a1a56b5c1275025c90beba40 291 PIRSF PIRSF038992 31 288 4.6E-78 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YP_3773 d5e08606a1a56b5c1275025c90beba40 291 SMART SM01133 51 259 1.1E-28 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YP_3773 d5e08606a1a56b5c1275025c90beba40 291 Hamap MF_02052 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [lsrF]. 1 291 75.38 T 14-10-2018 IPR033673 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase GO:0016747 YP_3773 d5e08606a1a56b5c1275025c90beba40 291 Gene3D G3DSA:3.20.20.70 1 291 1.7E-99 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_3773 d5e08606a1a56b5c1275025c90beba40 291 SUPERFAMILY SSF51569 35 274 1.39E-62 T 14-10-2018 YP_1447 2de0b8e259f91d99579e09848911e58e 379 Gene3D G3DSA:3.40.50.720 2 334 5.3E-47 T 14-10-2018 YP_1447 2de0b8e259f91d99579e09848911e58e 379 SUPERFAMILY SSF51735 12 363 2.43E-33 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1447 2de0b8e259f91d99579e09848911e58e 379 Pfam PF07993 Male sterility protein 16 247 3.4E-33 T 14-10-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 YP_1284 19af5fc749ebc59fe9b85b803d69e57a 290 Gene3D G3DSA:1.10.10.10 1 84 2.1E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1284 19af5fc749ebc59fe9b85b803d69e57a 290 Gene3D G3DSA:3.40.190.290 89 290 1.9E-45 T 14-10-2018 YP_1284 19af5fc749ebc59fe9b85b803d69e57a 290 Pfam PF03466 LysR substrate binding domain 89 289 7.2E-48 T 14-10-2018 IPR005119 LysR, substrate-binding YP_1284 19af5fc749ebc59fe9b85b803d69e57a 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 4.0E-15 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_1284 19af5fc749ebc59fe9b85b803d69e57a 290 SUPERFAMILY SSF46785 2 109 3.97E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1284 19af5fc749ebc59fe9b85b803d69e57a 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.1E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_1284 19af5fc749ebc59fe9b85b803d69e57a 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.1E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_1284 19af5fc749ebc59fe9b85b803d69e57a 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.1E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_1284 19af5fc749ebc59fe9b85b803d69e57a 290 SUPERFAMILY SSF53850 89 289 3.75E-47 T 14-10-2018 YP_2405 d9747850fa582a18146ef9600ae3ecc5 231 Gene3D G3DSA:3.40.50.1860 5 225 3.4E-92 T 14-10-2018 YP_2405 d9747850fa582a18146ef9600ae3ecc5 231 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 230 2.4E-75 T 14-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 YP_2405 d9747850fa582a18146ef9600ae3ecc5 231 SUPERFAMILY SSF53681 2 117 7.85E-36 T 14-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YP_2405 d9747850fa582a18146ef9600ae3ecc5 231 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 80 89 - T 14-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YP_2405 d9747850fa582a18146ef9600ae3ecc5 231 SUPERFAMILY SSF53681 119 230 4.91E-34 T 14-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YP_2405 d9747850fa582a18146ef9600ae3ecc5 231 Gene3D G3DSA:3.40.50.1860 105 216 3.4E-92 T 14-10-2018 YP_2405 d9747850fa582a18146ef9600ae3ecc5 231 Pfam PF01177 Asp/Glu/Hydantoin racemase 8 225 7.2E-59 T 14-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YP_1528 e0f975ea7bbb881a38438d3b97f1d90b 218 SMART SM00421 146 203 3.7E-17 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1528 e0f975ea7bbb881a38438d3b97f1d90b 218 SUPERFAMILY SSF52172 3 131 2.99E-31 T 14-10-2018 IPR011006 CheY-like superfamily YP_1528 e0f975ea7bbb881a38438d3b97f1d90b 218 Gene3D G3DSA:3.40.50.12740 2 209 9.5E-57 T 14-10-2018 YP_1528 e0f975ea7bbb881a38438d3b97f1d90b 218 SMART SM00448 2 115 4.4E-27 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1528 e0f975ea7bbb881a38438d3b97f1d90b 218 SUPERFAMILY SSF46894 136 210 3.4E-19 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_1528 e0f975ea7bbb881a38438d3b97f1d90b 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1528 e0f975ea7bbb881a38438d3b97f1d90b 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 5.1E-19 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1528 e0f975ea7bbb881a38438d3b97f1d90b 218 Pfam PF00072 Response regulator receiver domain 4 116 3.9E-29 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1528 e0f975ea7bbb881a38438d3b97f1d90b 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.3E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1528 e0f975ea7bbb881a38438d3b97f1d90b 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.3E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1528 e0f975ea7bbb881a38438d3b97f1d90b 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.3E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YP_1362 49a04bc3760ce6129b87458e42af95da 880 Gene3D G3DSA:3.40.50.300 380 558 1.5E-41 T 14-10-2018 YP_1362 49a04bc3760ce6129b87458e42af95da 880 SUPERFAMILY SSF52540 196 531 1.45E-69 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1362 49a04bc3760ce6129b87458e42af95da 880 SUPERFAMILY SSF81923 12 126 1.29E-16 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YP_1362 49a04bc3760ce6129b87458e42af95da 880 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 12 864 0.0 T 14-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 YP_1362 49a04bc3760ce6129b87458e42af95da 880 Gene3D G3DSA:1.10.1780.10 2 161 5.6E-44 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YP_1362 49a04bc3760ce6129b87458e42af95da 880 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 239 351 1.2E-9 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_1362 49a04bc3760ce6129b87458e42af95da 880 SMART SM01086 782 875 1.9E-12 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_1362 49a04bc3760ce6129b87458e42af95da 880 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 722 736 2.0E-32 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1362 49a04bc3760ce6129b87458e42af95da 880 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 660 678 2.0E-32 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1362 49a04bc3760ce6129b87458e42af95da 880 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 689 707 2.0E-32 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1362 49a04bc3760ce6129b87458e42af95da 880 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 615 633 2.0E-32 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 YP_1362 49a04bc3760ce6129b87458e42af95da 880 Gene3D G3DSA:3.40.50.300 186 378 1.0E-62 T 14-10-2018 YP_1362 49a04bc3760ce6129b87458e42af95da 880 SUPERFAMILY SSF52540 560 852 2.67E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1362 49a04bc3760ce6129b87458e42af95da 880 SMART SM00382 234 379 8.0E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1362 49a04bc3760ce6129b87458e42af95da 880 SMART SM00382 611 772 3.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1362 49a04bc3760ce6129b87458e42af95da 880 Gene3D G3DSA:3.40.50.300 564 780 3.7E-66 T 14-10-2018 YP_1362 49a04bc3760ce6129b87458e42af95da 880 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 782 860 9.0E-14 T 14-10-2018 IPR019489 Clp ATPase, C-terminal YP_1362 49a04bc3760ce6129b87458e42af95da 880 Pfam PF07724 AAA domain (Cdc48 subfamily) 611 775 3.5E-38 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YP_1362 49a04bc3760ce6129b87458e42af95da 880 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 330 342 - T 14-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 YP_1362 49a04bc3760ce6129b87458e42af95da 880 Gene3D G3DSA:1.10.8.60 782 877 5.9E-12 T 14-10-2018 YP_pCD05 e54fda5936a4dba034d297a70e9efe65 122 Pfam PF13091 PLD-like domain 42 112 8.4E-13 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 YP_pCD05 e54fda5936a4dba034d297a70e9efe65 122 SMART SM00155 56 83 0.0029 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 YP_pCD05 e54fda5936a4dba034d297a70e9efe65 122 SUPERFAMILY SSF56024 32 117 2.64E-17 T 14-10-2018 YP_pCD05 e54fda5936a4dba034d297a70e9efe65 122 Gene3D G3DSA:3.30.870.10 13 122 1.5E-19 T 14-10-2018 YP_2980 4d02a3d3b4b4bbdbef1812f1fe0b0b59 141 Pfam PF06853 Protein of unknown function (DUF1249) 22 135 7.0E-41 T 14-10-2018 IPR009659 Protein of unknown function DUF1249 YP_3704 864cfccf212ab4a1d71b979a3aae1660 169 TIGRFAM TIGR00077 lspA: signal peptidase II 3 160 7.3E-51 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 YP_3704 864cfccf212ab4a1d71b979a3aae1660 169 Pfam PF01252 Signal peptidase (SPase) II 16 154 2.2E-37 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 YP_3704 864cfccf212ab4a1d71b979a3aae1660 169 ProSitePatterns PS00855 Signal peptidases II signature. 104 116 - T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 YP_3704 864cfccf212ab4a1d71b979a3aae1660 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 137 153 1.6E-18 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 YP_3704 864cfccf212ab4a1d71b979a3aae1660 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 53 61 1.6E-18 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 YP_3704 864cfccf212ab4a1d71b979a3aae1660 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 101 116 1.6E-18 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 YP_3704 864cfccf212ab4a1d71b979a3aae1660 169 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 7 162 17.049 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 YP_0717 90e39e8c6970454c73f6b0b46de59401 173 SUPERFAMILY SSF53335 4 168 9.16E-31 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0717 90e39e8c6970454c73f6b0b46de59401 173 Gene3D G3DSA:3.40.50.150 1 172 6.7E-40 T 14-10-2018 YP_0717 90e39e8c6970454c73f6b0b46de59401 173 Pfam PF08241 Methyltransferase domain 9 63 9.9E-17 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 YP_1811 7281f707051d42cbc207aac299893beb 214 PIRSF PIRSF002884 1 214 1.5E-87 T 14-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 YP_1811 7281f707051d42cbc207aac299893beb 214 SUPERFAMILY SSF75708 13 213 2.35E-65 T 14-10-2018 YP_1811 7281f707051d42cbc207aac299893beb 214 Pfam PF04344 Chemotaxis phosphatase, CheZ 16 214 1.0E-75 T 14-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 YP_1811 7281f707051d42cbc207aac299893beb 214 Gene3D G3DSA:1.20.5.590 6 34 5.7E-12 T 14-10-2018 YP_1811 7281f707051d42cbc207aac299893beb 214 Gene3D G3DSA:1.10.287.500 35 168 2.6E-51 T 14-10-2018 YP_1173 215bd86943ef9345d4f4a0c8441c1832 428 Pfam PF04403 Paraquat-inducible protein A 56 206 9.6E-40 T 14-10-2018 IPR007498 Intermembrane transport protein PqiA-like YP_1173 215bd86943ef9345d4f4a0c8441c1832 428 Pfam PF04403 Paraquat-inducible protein A 259 415 1.8E-53 T 14-10-2018 IPR007498 Intermembrane transport protein PqiA-like YP_1173 215bd86943ef9345d4f4a0c8441c1832 428 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 13 414 1.2E-158 T 14-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type YP_2283 a1acb0306e570724bba7f81c2c927e5c 316 TIGRFAM TIGR02565 cas_Csy2: CRISPR type I-F/YPEST-associated protein Csy2 4 300 9.0E-128 T 14-10-2018 IPR013398 CRISPR-associated protein Csy2 YP_2283 a1acb0306e570724bba7f81c2c927e5c 316 Pfam PF09614 CRISPR-associated protein (Cas_Csy2) 5 299 3.2E-103 T 14-10-2018 IPR013398 CRISPR-associated protein Csy2 YP_3735 dbd3e98fda5f49fe2712b65fc25fc1ba 168 Pfam PF00691 OmpA family 64 159 4.6E-18 T 14-10-2018 IPR006665 OmpA-like domain YP_3735 dbd3e98fda5f49fe2712b65fc25fc1ba 168 PRINTS PR01021 OMPA domain signature 95 110 3.8E-11 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YP_3735 dbd3e98fda5f49fe2712b65fc25fc1ba 168 PRINTS PR01021 OMPA domain signature 65 87 3.8E-11 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YP_3735 dbd3e98fda5f49fe2712b65fc25fc1ba 168 PRINTS PR01021 OMPA domain signature 110 126 3.8E-11 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YP_3735 dbd3e98fda5f49fe2712b65fc25fc1ba 168 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 148 168 7.6E-8 T 14-10-2018 YP_3735 dbd3e98fda5f49fe2712b65fc25fc1ba 168 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 110 127 7.6E-8 T 14-10-2018 YP_3735 dbd3e98fda5f49fe2712b65fc25fc1ba 168 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 128 147 7.6E-8 T 14-10-2018 YP_3735 dbd3e98fda5f49fe2712b65fc25fc1ba 168 SUPERFAMILY SSF103088 51 165 2.09E-32 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_3735 dbd3e98fda5f49fe2712b65fc25fc1ba 168 Gene3D G3DSA:3.30.1330.60 31 168 4.4E-42 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_0815 fc22de328af7ed83b27f648faf91f378 261 TIGRFAM TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase 5 260 1.2E-146 T 14-10-2018 IPR013446 Glucose-1-phosphate cytidylyltransferase GO:0047343 KEGG: 00500+2.7.7.33|KEGG: 00520+2.7.7.33|MetaCyc: PWY-5833|MetaCyc: PWY-5940 YP_0815 fc22de328af7ed83b27f648faf91f378 261 Pfam PF00483 Nucleotidyl transferase 6 215 6.0E-19 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 YP_0815 fc22de328af7ed83b27f648faf91f378 261 SUPERFAMILY SSF53448 5 261 3.13E-67 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_0815 fc22de328af7ed83b27f648faf91f378 261 Gene3D G3DSA:3.90.550.10 4 261 3.9E-76 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_3866 c54312269d5c5d12961b0a76347a3e72 1496 SUPERFAMILY SSF69318 391 676 5.49E-17 T 14-10-2018 YP_3866 c54312269d5c5d12961b0a76347a3e72 1496 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 30 51 1.9E-28 T 14-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 YP_3866 c54312269d5c5d12961b0a76347a3e72 1496 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 302 320 1.9E-28 T 14-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 YP_3866 c54312269d5c5d12961b0a76347a3e72 1496 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 89 105 1.9E-28 T 14-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 YP_3866 c54312269d5c5d12961b0a76347a3e72 1496 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 189 207 1.9E-28 T 14-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 YP_3866 c54312269d5c5d12961b0a76347a3e72 1496 Pfam PF12255 Insecticide toxin TcdB middle/C-terminal region 872 1018 8.3E-58 T 14-10-2018 IPR022044 Insecticide toxin TcdB middle/C-terminal YP_3866 c54312269d5c5d12961b0a76347a3e72 1496 Pfam PF03534 Salmonella virulence plasmid 65kDa B protein 33 321 1.2E-101 T 14-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 YP_3866 c54312269d5c5d12961b0a76347a3e72 1496 Pfam PF12256 Insecticide toxin TcdB middle/N-terminal region 648 822 3.4E-29 T 14-10-2018 IPR022045 Insecticide toxin TcdB middle/N-terminal YP_3400 583b3c09d4cc9dbedf610ff3cf10e464 439 TIGRFAM TIGR02630 xylose_isom_A: xylose isomerase 4 437 1.4E-215 T 14-10-2018 IPR013452 Xylose isomerase, bacterial-type GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YP_3400 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 180 201 9.2E-85 T 14-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YP_3400 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 156 175 9.2E-85 T 14-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YP_3400 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 207 226 9.2E-85 T 14-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YP_3400 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 333 344 9.2E-85 T 14-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YP_3400 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 271 298 9.2E-85 T 14-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YP_3400 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 92 114 9.2E-85 T 14-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YP_3400 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 133 153 9.2E-85 T 14-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YP_3400 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 300 311 9.2E-85 T 14-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YP_3400 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 229 253 9.2E-85 T 14-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YP_3400 583b3c09d4cc9dbedf610ff3cf10e464 439 Hamap MF_00455 Xylose isomerase [xylA]. 11 437 52.638 T 14-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YP_3400 583b3c09d4cc9dbedf610ff3cf10e464 439 Gene3D G3DSA:3.20.20.150 2 439 1.9E-182 T 14-10-2018 YP_3400 583b3c09d4cc9dbedf610ff3cf10e464 439 SUPERFAMILY SSF51658 4 438 1.6E-173 T 14-10-2018 IPR036237 Xylose isomerase-like superfamily YP_1186 afa3a911adce840f14bf02524e1d51ab 618 Pfam PF03734 L,D-transpeptidase catalytic domain 377 546 6.4E-29 T 14-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 YP_1186 afa3a911adce840f14bf02524e1d51ab 618 SUPERFAMILY SSF141523 378 536 4.32E-19 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like YP_1186 afa3a911adce840f14bf02524e1d51ab 618 Gene3D G3DSA:1.10.101.10 309 349 1.7E-9 T 14-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 YP_1186 afa3a911adce840f14bf02524e1d51ab 618 SUPERFAMILY SSF47090 315 358 4.24E-11 T 14-10-2018 IPR036365 PGBD-like superfamily YP_1186 afa3a911adce840f14bf02524e1d51ab 618 Pfam PF01471 Putative peptidoglycan binding domain 316 350 3.3E-8 T 14-10-2018 IPR002477 Peptidoglycan binding-like YP_0438 2cc7949643ce9a81dbb1687bb9f1f176 676 Gene3D G3DSA:2.40.170.20 167 676 5.4E-126 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_0438 2cc7949643ce9a81dbb1687bb9f1f176 676 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 44 676 1.1E-198 T 14-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 YP_0438 2cc7949643ce9a81dbb1687bb9f1f176 676 SUPERFAMILY SSF56935 44 676 5.13E-99 T 14-10-2018 YP_0438 2cc7949643ce9a81dbb1687bb9f1f176 676 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 51 - T 14-10-2018 IPR010916 TonB box, conserved site YP_0438 2cc7949643ce9a81dbb1687bb9f1f176 676 Gene3D G3DSA:2.170.130.10 43 166 1.5E-42 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YP_0438 2cc7949643ce9a81dbb1687bb9f1f176 676 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 161 4.1E-24 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain YP_0438 2cc7949643ce9a81dbb1687bb9f1f176 676 Pfam PF00593 TonB dependent receptor 277 674 1.9E-45 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YP_0438 2cc7949643ce9a81dbb1687bb9f1f176 676 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 44 676 3.1E-157 T 14-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 YP_2708 61eff376c0e1db6cf90a0d5e5faf157a 287 SUPERFAMILY SSF161098 24 278 1.31E-58 T 14-10-2018 IPR035906 MetI-like superfamily YP_2708 61eff376c0e1db6cf90a0d5e5faf157a 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 276 1.0E-19 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2708 61eff376c0e1db6cf90a0d5e5faf157a 287 Gene3D G3DSA:1.10.3720.10 24 281 6.5E-58 T 14-10-2018 IPR035906 MetI-like superfamily YP_1384 e44ba72a646b5720eeb30dc0b9512a7a 266 SUPERFAMILY SSF69572 14 258 4.58E-87 T 14-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 YP_1384 e44ba72a646b5720eeb30dc0b9512a7a 266 Gene3D G3DSA:3.40.50.720 15 266 4.4E-89 T 14-10-2018 YP_1384 e44ba72a646b5720eeb30dc0b9512a7a 266 Pfam PF00899 ThiF family 23 255 5.1E-63 T 14-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 YP_1384 e44ba72a646b5720eeb30dc0b9512a7a 266 TIGRFAM TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB 19 258 5.9E-123 T 14-10-2018 IPR012730 Molybdopterin synthase sulfurylase MoeB GO:0006777 MetaCyc: PWY-6823 YP_3900 9854525a5319f285d57a8b3dd7177372 275 SMART SM00849 44 244 0.0053 T 14-10-2018 IPR001279 Metallo-beta-lactamase YP_3900 9854525a5319f285d57a8b3dd7177372 275 SUPERFAMILY SSF56281 36 248 2.75E-27 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_3900 9854525a5319f285d57a8b3dd7177372 275 Gene3D G3DSA:3.60.15.10 9 248 6.8E-45 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_3900 9854525a5319f285d57a8b3dd7177372 275 Pfam PF00753 Metallo-beta-lactamase superfamily 46 208 1.4E-12 T 14-10-2018 IPR001279 Metallo-beta-lactamase YP_3621 f1ff304ce5ab0e3b56e714c7570e6281 177 ProDom PD089227 MONITOR PERIPLASMIC SECRETION PRECURSOR SIGNAL YACA 1 177 3.0E-91 T 14-10-2018 IPR009502 Secretion monitor GO:0045182 YP_3621 f1ff304ce5ab0e3b56e714c7570e6281 177 Hamap MF_01332 Secretion monitor [secM]. 1 177 43.822 T 14-10-2018 IPR009502 Secretion monitor GO:0045182 YP_3621 f1ff304ce5ab0e3b56e714c7570e6281 177 PIRSF PIRSF004572 1 177 1.3E-86 T 14-10-2018 IPR009502 Secretion monitor GO:0045182 YP_3621 f1ff304ce5ab0e3b56e714c7570e6281 177 Pfam PF06558 Secretion monitor precursor protein (SecM) 24 174 1.4E-58 T 14-10-2018 IPR009502 Secretion monitor GO:0045182 YP_3431 cca54d9e4a73c72ae09b65ebe1ba88bf 591 SUPERFAMILY SSF52540 332 578 1.63E-78 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3431 cca54d9e4a73c72ae09b65ebe1ba88bf 591 SMART SM00382 364 562 4.9E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3431 cca54d9e4a73c72ae09b65ebe1ba88bf 591 ProSitePatterns PS00211 ABC transporters family signature. 480 494 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3431 cca54d9e4a73c72ae09b65ebe1ba88bf 591 SUPERFAMILY SSF90123 27 324 7.46E-45 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_3431 cca54d9e4a73c72ae09b65ebe1ba88bf 591 Pfam PF00005 ABC transporter 356 508 1.0E-26 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3431 cca54d9e4a73c72ae09b65ebe1ba88bf 591 Pfam PF00664 ABC transporter transmembrane region 43 292 1.7E-14 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YP_3431 cca54d9e4a73c72ae09b65ebe1ba88bf 591 Gene3D G3DSA:3.40.50.300 331 586 1.6E-79 T 14-10-2018 YP_3431 cca54d9e4a73c72ae09b65ebe1ba88bf 591 Gene3D G3DSA:1.20.1560.10 12 325 2.5E-37 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YP_3777 b43cb486c251794fa50d3e680ea3b3b9 361 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 9 336 3.8E-92 T 14-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 YP_3777 b43cb486c251794fa50d3e680ea3b3b9 361 Pfam PF02378 Phosphotransferase system, EIIC 18 283 1.1E-12 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 YP_0331 a818b1fe1d8017833928d555ecd44f5f 333 Gene3D G3DSA:2.70.70.10 186 333 2.7E-38 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_0331 a818b1fe1d8017833928d555ecd44f5f 333 SMART SM00257 78 122 5.4E-10 T 14-10-2018 IPR018392 LysM domain YP_0331 a818b1fe1d8017833928d555ecd44f5f 333 Pfam PF01551 Peptidase family M23 233 326 5.9E-32 T 14-10-2018 IPR016047 Peptidase M23 YP_0331 a818b1fe1d8017833928d555ecd44f5f 333 SUPERFAMILY SSF51261 78 330 1.88E-50 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_0331 a818b1fe1d8017833928d555ecd44f5f 333 Gene3D G3DSA:3.10.350.10 71 126 2.0E-10 T 14-10-2018 IPR036779 LysM domain superfamily YP_0331 a818b1fe1d8017833928d555ecd44f5f 333 Pfam PF01476 LysM domain 79 120 6.6E-9 T 14-10-2018 IPR018392 LysM domain YP_3986 6c785211c6df1d2a6d015a9d548ff633 219 PRINTS PR01021 OMPA domain signature 146 161 5.0E-13 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YP_3986 6c785211c6df1d2a6d015a9d548ff633 219 PRINTS PR01021 OMPA domain signature 161 177 5.0E-13 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YP_3986 6c785211c6df1d2a6d015a9d548ff633 219 PRINTS PR01021 OMPA domain signature 116 138 5.0E-13 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YP_3986 6c785211c6df1d2a6d015a9d548ff633 219 SUPERFAMILY SSF103088 103 218 6.15E-37 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_3986 6c785211c6df1d2a6d015a9d548ff633 219 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 199 219 2.4E-5 T 14-10-2018 YP_3986 6c785211c6df1d2a6d015a9d548ff633 219 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 132 158 2.4E-5 T 14-10-2018 YP_3986 6c785211c6df1d2a6d015a9d548ff633 219 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 179 198 2.4E-5 T 14-10-2018 YP_3986 6c785211c6df1d2a6d015a9d548ff633 219 Gene3D G3DSA:3.30.1330.60 79 219 3.9E-51 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_3986 6c785211c6df1d2a6d015a9d548ff633 219 Pfam PF13488 Glycine zipper 38 85 3.4E-11 T 14-10-2018 IPR039567 Glycine zipper domain YP_3986 6c785211c6df1d2a6d015a9d548ff633 219 Pfam PF00691 OmpA family 115 210 3.3E-21 T 14-10-2018 IPR006665 OmpA-like domain YP_1180 ed12023cc7831642d414e8750c404a28 416 SUPERFAMILY SSF54675 17 153 1.03E-41 T 14-10-2018 YP_1180 ed12023cc7831642d414e8750c404a28 416 PIRSF PIRSF000484 14 397 1.1E-57 T 14-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 YP_1180 ed12023cc7831642d414e8750c404a28 416 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 184 409 1.1E-80 T 14-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 YP_1180 ed12023cc7831642d414e8750c404a28 416 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 20 411 48.606 T 14-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 YP_1180 ed12023cc7831642d414e8750c404a28 416 SUPERFAMILY SSF51690 135 407 1.3E-85 T 14-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 YP_1180 ed12023cc7831642d414e8750c404a28 416 Gene3D G3DSA:3.20.140.10 16 416 2.4E-174 T 14-10-2018 YP_1180 ed12023cc7831642d414e8750c404a28 416 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 23 410 1.1E-163 T 14-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 YP_2904 a8c5eb2df80488fd8626c92e28b311ad 439 PRINTS PR00173 Glutamate-aspartate symporter signature 208 227 1.1E-13 T 14-10-2018 YP_2904 a8c5eb2df80488fd8626c92e28b311ad 439 PRINTS PR00173 Glutamate-aspartate symporter signature 73 93 1.1E-13 T 14-10-2018 YP_2904 a8c5eb2df80488fd8626c92e28b311ad 439 PRINTS PR00173 Glutamate-aspartate symporter signature 372 392 1.1E-13 T 14-10-2018 YP_2904 a8c5eb2df80488fd8626c92e28b311ad 439 PRINTS PR00173 Glutamate-aspartate symporter signature 32 52 1.1E-13 T 14-10-2018 YP_2904 a8c5eb2df80488fd8626c92e28b311ad 439 PRINTS PR00173 Glutamate-aspartate symporter signature 310 336 1.1E-13 T 14-10-2018 YP_2904 a8c5eb2df80488fd8626c92e28b311ad 439 PRINTS PR00173 Glutamate-aspartate symporter signature 345 364 1.1E-13 T 14-10-2018 YP_2904 a8c5eb2df80488fd8626c92e28b311ad 439 Gene3D G3DSA:1.10.3860.10 29 427 1.2E-71 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 YP_2904 a8c5eb2df80488fd8626c92e28b311ad 439 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 26 427 36.333 T 14-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 YP_2904 a8c5eb2df80488fd8626c92e28b311ad 439 SUPERFAMILY SSF118215 38 421 2.22E-95 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 YP_2904 a8c5eb2df80488fd8626c92e28b311ad 439 Pfam PF00375 Sodium:dicarboxylate symporter family 38 420 3.9E-64 T 14-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 YP_2534 5fc82dd4387e346a385e97431453001e 187 SUPERFAMILY SSF53927 23 174 8.87E-55 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 YP_2534 5fc82dd4387e346a385e97431453001e 187 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 74 111 - T 14-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 YP_2534 5fc82dd4387e346a385e97431453001e 187 Gene3D G3DSA:3.40.140.10 19 184 1.6E-64 T 14-10-2018 YP_2534 5fc82dd4387e346a385e97431453001e 187 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 29 170 47.333 T 14-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 YP_2534 5fc82dd4387e346a385e97431453001e 187 Pfam PF14437 MafB19-like deaminase 25 170 5.2E-30 T 14-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 YP_1660 f9dadaa92c685bd5d8e84fb86f5e6648 420 Gene3D G3DSA:1.10.443.10 207 397 4.4E-17 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YP_1660 f9dadaa92c685bd5d8e84fb86f5e6648 420 Pfam PF13356 Arm DNA-binding domain 3 87 1.3E-17 T 14-10-2018 IPR025166 Integrase, DNA-binding domain YP_1660 f9dadaa92c685bd5d8e84fb86f5e6648 420 Pfam PF00589 Phage integrase family 225 383 2.8E-18 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YP_1660 f9dadaa92c685bd5d8e84fb86f5e6648 420 Gene3D G3DSA:3.30.160.390 1 88 8.7E-34 T 14-10-2018 IPR038488 Integrase, DNA-binding domain superfamily YP_1660 f9dadaa92c685bd5d8e84fb86f5e6648 420 SUPERFAMILY SSF56349 98 392 7.65E-55 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YP_1660 f9dadaa92c685bd5d8e84fb86f5e6648 420 Gene3D G3DSA:1.10.150.130 90 202 2.7E-29 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal YP_3472 d515cb3bb01d32ca9d7eb17c1e71c96c 92 Pfam PF12759 InsA C-terminal domain 44 89 6.0E-20 T 14-10-2018 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YP_3472 d515cb3bb01d32ca9d7eb17c1e71c96c 92 Pfam PF03811 InsA N-terminal domain 2 37 1.9E-9 T 14-10-2018 IPR003220 InsA N-terminal domain GO:0006313 YP_2162 69dfedd9b7a878aa127c47313c149bfe 121 Pfam PF06945 Protein of unknown function (DUF1289) 54 99 9.3E-19 T 14-10-2018 IPR010710 Protein of unknown function DUF1289 YP_2801 b977fb34b6fab30544aae4887916a387 252 Gene3D G3DSA:3.40.1180.10 5 244 3.1E-91 T 14-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 YP_2801 b977fb34b6fab30544aae4887916a387 252 SUPERFAMILY SSF64005 14 238 4.71E-86 T 14-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 YP_2801 b977fb34b6fab30544aae4887916a387 252 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 15 243 39.842 T 14-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 YP_2801 b977fb34b6fab30544aae4887916a387 252 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 188 205 - T 14-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 YP_2801 b977fb34b6fab30544aae4887916a387 252 Pfam PF01255 Putative undecaprenyl diphosphate synthase 22 242 2.5E-78 T 14-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 YP_2801 b977fb34b6fab30544aae4887916a387 252 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 16 242 2.7E-101 T 14-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 YP_1295 722d5cf75c1151ebd1f2faa965e3d3b5 178 SUPERFAMILY SSF55811 30 161 4.06E-34 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YP_1295 722d5cf75c1151ebd1f2faa965e3d3b5 178 Gene3D G3DSA:3.90.79.10 22 158 9.3E-38 T 14-10-2018 YP_1295 722d5cf75c1151ebd1f2faa965e3d3b5 178 ProSitePatterns PS00893 Nudix box signature. 63 84 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YP_1295 722d5cf75c1151ebd1f2faa965e3d3b5 178 Pfam PF00293 NUDIX domain 32 153 5.7E-28 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YP_1295 722d5cf75c1151ebd1f2faa965e3d3b5 178 PRINTS PR00502 NUDIX hydrolase family signature 58 72 5.7E-9 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YP_1295 722d5cf75c1151ebd1f2faa965e3d3b5 178 PRINTS PR00502 NUDIX hydrolase family signature 72 87 5.7E-9 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YP_0723 a497bd137dc88c9d3c78850d03b86f54 303 Pfam PF04381 Putative exonuclease, RdgC 2 300 1.4E-129 T 14-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 YP_0723 a497bd137dc88c9d3c78850d03b86f54 303 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 2 302 41.975 T 14-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 YP_0502 a011ea4e410c777c0fcecc89ac979e22 478 Gene3D G3DSA:1.10.275.10 6 142 9.8E-59 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal YP_0502 a011ea4e410c777c0fcecc89ac979e22 478 Pfam PF00206 Lyase 13 345 1.0E-106 T 14-10-2018 IPR022761 Fumarate lyase, N-terminal YP_0502 a011ea4e410c777c0fcecc89ac979e22 478 SUPERFAMILY SSF48557 2 458 5.45E-142 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 YP_0502 a011ea4e410c777c0fcecc89ac979e22 478 PRINTS PR00145 Argininosuccinate lyase family signature 178 198 3.9E-5 T 14-10-2018 YP_0502 a011ea4e410c777c0fcecc89ac979e22 478 PRINTS PR00145 Argininosuccinate lyase family signature 137 159 3.9E-5 T 14-10-2018 YP_0502 a011ea4e410c777c0fcecc89ac979e22 478 PRINTS PR00145 Argininosuccinate lyase family signature 320 336 3.9E-5 T 14-10-2018 YP_0502 a011ea4e410c777c0fcecc89ac979e22 478 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 6 474 7.1E-264 T 14-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 YP_0502 a011ea4e410c777c0fcecc89ac979e22 478 PRINTS PR00149 Fumarate lyase superfamily signature 274 301 5.2E-27 T 14-10-2018 IPR000362 Fumarate lyase family YP_0502 a011ea4e410c777c0fcecc89ac979e22 478 PRINTS PR00149 Fumarate lyase superfamily signature 320 336 5.2E-27 T 14-10-2018 IPR000362 Fumarate lyase family YP_0502 a011ea4e410c777c0fcecc89ac979e22 478 PRINTS PR00149 Fumarate lyase superfamily signature 138 156 5.2E-27 T 14-10-2018 IPR000362 Fumarate lyase family YP_0502 a011ea4e410c777c0fcecc89ac979e22 478 PRINTS PR00149 Fumarate lyase superfamily signature 183 201 5.2E-27 T 14-10-2018 IPR000362 Fumarate lyase family YP_0502 a011ea4e410c777c0fcecc89ac979e22 478 Gene3D G3DSA:1.20.200.10 143 410 1.7E-113 T 14-10-2018 YP_0502 a011ea4e410c777c0fcecc89ac979e22 478 ProSitePatterns PS00163 Fumarate lyases signature. 320 329 - T 14-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 YP_0502 a011ea4e410c777c0fcecc89ac979e22 478 Pfam PF10415 Fumarase C C-terminus 411 464 4.1E-17 T 14-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YP_0502 a011ea4e410c777c0fcecc89ac979e22 478 Gene3D G3DSA:1.10.40.30 411 460 2.4E-29 T 14-10-2018 YP_1335 f0a2e8c2a013d6f736753e664607add6 105 SMART SM00992 3 102 4.5E-36 T 14-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 YP_1335 f0a2e8c2a013d6f736753e664607add6 105 Gene3D G3DSA:2.30.30.390 1 105 3.0E-39 T 14-10-2018 IPR036623 Hemimethylated DNA-binding domain superfamily GO:0003677 YP_1335 f0a2e8c2a013d6f736753e664607add6 105 Hamap MF_01194 Heat shock protein HspQ [hspQ]. 1 105 36.691 T 14-10-2018 IPR022866 Heat shock protein HspQ YP_1335 f0a2e8c2a013d6f736753e664607add6 105 Pfam PF08755 Hemimethylated DNA-binding protein YccV like 5 96 3.6E-19 T 14-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 YP_1335 f0a2e8c2a013d6f736753e664607add6 105 TIGRFAM TIGR02097 yccV: hemimethylated DNA binding domain 4 101 6.1E-32 T 14-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 YP_1335 f0a2e8c2a013d6f736753e664607add6 105 SUPERFAMILY SSF141255 4 96 6.02E-30 T 14-10-2018 IPR036623 Hemimethylated DNA-binding domain superfamily GO:0003677 YP_1349 efacffae32df6accc988a0b4cd4cb833 412 SUPERFAMILY SSF53901 4 170 5.21E-31 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_1349 efacffae32df6accc988a0b4cd4cb833 412 SUPERFAMILY SSF53901 174 411 4.4E-44 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_1349 efacffae32df6accc988a0b4cd4cb833 412 Gene3D G3DSA:3.40.47.10 4 410 3.5E-140 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_1349 efacffae32df6accc988a0b4cd4cb833 412 Pfam PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal 3 168 1.8E-7 T 14-10-2018 IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal GO:0004421|GO:0008299 Reactome: R-HSA-1989781 YP_1349 efacffae32df6accc988a0b4cd4cb833 412 Pfam PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal 267 408 1.0E-15 T 14-10-2018 IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain GO:0004421|GO:0008299 KEGG: 00072+2.3.3.10|KEGG: 00280+2.3.3.10|KEGG: 00650+2.3.3.10|KEGG: 00900+2.3.3.10|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7571|MetaCyc: PWY-922|Reactome: R-HSA-1989781 YP_1349 efacffae32df6accc988a0b4cd4cb833 412 Gene3D G3DSA:3.40.47.10 178 331 3.5E-140 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 YP_1327 e1fc97f044c6f15561628321fdc8fe2a 168 PIRSF PIRSF003093 1 168 2.9E-87 T 14-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 YP_1327 e1fc97f044c6f15561628321fdc8fe2a 168 Hamap MF_01179 Cell division inhibitor SulA [sulA]. 1 168 40.106 T 14-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 YP_1327 e1fc97f044c6f15561628321fdc8fe2a 168 Gene3D G3DSA:3.40.50.300 33 145 2.8E-26 T 14-10-2018 YP_1327 e1fc97f044c6f15561628321fdc8fe2a 168 SUPERFAMILY SSF52540 32 146 9.96E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1327 e1fc97f044c6f15561628321fdc8fe2a 168 Pfam PF03846 Cell division inhibitor SulA 9 120 5.4E-55 T 14-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 YP_pCD98 3f6e0d207924c247f1db5f9e7d951ceb 107 SUPERFAMILY SSF46689 9 98 4.66E-19 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_pCD98 3f6e0d207924c247f1db5f9e7d951ceb 107 Pfam PF01527 Transposase 8 81 4.1E-22 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 YP_pCD98 3f6e0d207924c247f1db5f9e7d951ceb 107 Gene3D G3DSA:1.10.10.60 14 97 1.1E-7 T 14-10-2018 YP_2826 ff52386c64c21d019550d29ead4a2d38 390 PIRSF PIRSF019422 1 367 1.0E-87 T 14-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A YP_2826 ff52386c64c21d019550d29ead4a2d38 390 SMART SM00925 125 259 7.8E-75 T 14-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 YP_2826 ff52386c64c21d019550d29ead4a2d38 390 Gene3D G3DSA:2.40.40.10 54 355 7.3E-154 T 14-10-2018 IPR036908 RlpA-like domain superfamily YP_2826 ff52386c64c21d019550d29ead4a2d38 390 Pfam PF06725 3D domain 279 356 4.8E-25 T 14-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 YP_2826 ff52386c64c21d019550d29ead4a2d38 390 Gene3D G3DSA:2.40.240.50 125 264 7.3E-154 T 14-10-2018 YP_2826 ff52386c64c21d019550d29ead4a2d38 390 SUPERFAMILY SSF50685 25 355 7.32E-111 T 14-10-2018 IPR036908 RlpA-like domain superfamily YP_2826 ff52386c64c21d019550d29ead4a2d38 390 Pfam PF03562 MltA specific insert domain 102 259 3.4E-42 T 14-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 YP_1457 6e2207647a187998e232e1f203e3f394 381 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 14-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 YP_1457 6e2207647a187998e232e1f203e3f394 381 SUPERFAMILY SSF51395 7 374 7.33E-99 T 14-10-2018 YP_1457 6e2207647a187998e232e1f203e3f394 381 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 380 73.702 T 14-10-2018 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 YP_1457 6e2207647a187998e232e1f203e3f394 381 Pfam PF01070 FMN-dependent dehydrogenase 13 375 1.3E-125 T 14-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 YP_1457 6e2207647a187998e232e1f203e3f394 381 Gene3D G3DSA:3.20.20.70 3 380 1.9E-125 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_1457 6e2207647a187998e232e1f203e3f394 381 PIRSF PIRSF000138 2 380 3.6E-122 T 14-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 YP_2648 1b945ecf6f35e1d84190afd494a49ef0 315 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 21 312 1.6E-85 T 14-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 YP_2648 1b945ecf6f35e1d84190afd494a49ef0 315 Pfam PF04261 Dyp-type peroxidase family 21 310 1.6E-92 T 14-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 YP_2648 1b945ecf6f35e1d84190afd494a49ef0 315 SUPERFAMILY SSF54909 17 313 5.54E-91 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel YP_1359 7bde1b93e66760c3577d9e7717678841 228 Pfam PF09850 Type VI secretion system protein DotU 14 215 4.5E-46 T 14-10-2018 IPR017732 Type IV / VI secretion system, DotU YP_1359 7bde1b93e66760c3577d9e7717678841 228 Gene3D G3DSA:1.25.40.590 7 188 2.3E-49 T 14-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily YP_1359 7bde1b93e66760c3577d9e7717678841 228 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 14 218 2.0E-48 T 14-10-2018 IPR017732 Type IV / VI secretion system, DotU YP_3464 7bde1b93e66760c3577d9e7717678841 228 Pfam PF09850 Type VI secretion system protein DotU 14 215 4.5E-46 T 14-10-2018 IPR017732 Type IV / VI secretion system, DotU YP_3464 7bde1b93e66760c3577d9e7717678841 228 Gene3D G3DSA:1.25.40.590 7 188 2.3E-49 T 14-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily YP_3464 7bde1b93e66760c3577d9e7717678841 228 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 14 218 2.0E-48 T 14-10-2018 IPR017732 Type IV / VI secretion system, DotU YP_2327 2b24e51f6e21b28246513635682a98a2 247 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 243 4.6E-69 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_2327 2b24e51f6e21b28246513635682a98a2 247 Gene3D G3DSA:3.40.190.10 110 205 2.2E-85 T 14-10-2018 YP_2327 2b24e51f6e21b28246513635682a98a2 247 Gene3D G3DSA:3.40.190.10 35 242 2.2E-85 T 14-10-2018 YP_2327 2b24e51f6e21b28246513635682a98a2 247 SUPERFAMILY SSF53850 8 244 3.37E-75 T 14-10-2018 YP_2327 2b24e51f6e21b28246513635682a98a2 247 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 48 61 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site YP_2327 2b24e51f6e21b28246513635682a98a2 247 SMART SM00079 26 244 5.8E-8 T 14-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 YP_2327 2b24e51f6e21b28246513635682a98a2 247 SMART SM00062 26 245 2.1E-73 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_2168 a5b7e108b05caa4a43a806a8ca643aa4 215 Gene3D G3DSA:3.30.420.10 9 214 5.1E-58 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_2168 a5b7e108b05caa4a43a806a8ca643aa4 215 TIGRFAM TIGR01298 RNaseT: ribonuclease T 10 208 1.4E-105 T 14-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 YP_2168 a5b7e108b05caa4a43a806a8ca643aa4 215 Pfam PF00929 Exonuclease 20 194 3.1E-37 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III YP_2168 a5b7e108b05caa4a43a806a8ca643aa4 215 SMART SM00479 18 203 8.1E-41 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III YP_2168 a5b7e108b05caa4a43a806a8ca643aa4 215 SUPERFAMILY SSF53098 9 207 9.11E-58 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_2168 a5b7e108b05caa4a43a806a8ca643aa4 215 Hamap MF_00157 Ribonuclease T [rnt]. 1 215 116.596 T 14-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 YP_3747 866bd352911e61585d346042e9d1c48b 270 PIRSF PIRSF005902 2 267 2.6E-67 T 14-10-2018 IPR001130 TatD family GO:0016788 YP_3747 866bd352911e61585d346042e9d1c48b 270 SUPERFAMILY SSF51556 12 266 6.23E-76 T 14-10-2018 IPR032466 Metal-dependent hydrolase YP_3747 866bd352911e61585d346042e9d1c48b 270 Pfam PF01026 TatD related DNase 13 264 2.5E-65 T 14-10-2018 IPR001130 TatD family GO:0016788 YP_3747 866bd352911e61585d346042e9d1c48b 270 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 12 20 - T 14-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 YP_3747 866bd352911e61585d346042e9d1c48b 270 Gene3D G3DSA:3.20.20.140 9 266 2.9E-85 T 14-10-2018 YP_0475 a9065623a555437f33290757e7e0479e 468 SUPERFAMILY SSF52540 201 452 5.47E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0475 a9065623a555437f33290757e7e0479e 468 Pfam PF00772 DnaB-like helicase N terminal domain 24 125 2.2E-36 T 14-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 YP_0475 a9065623a555437f33290757e7e0479e 468 SUPERFAMILY SSF48024 22 133 3.53E-38 T 14-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 YP_0475 a9065623a555437f33290757e7e0479e 468 Gene3D G3DSA:1.10.860.10 17 180 2.0E-54 T 14-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YP_0475 a9065623a555437f33290757e7e0479e 468 Gene3D G3DSA:3.40.50.300 181 460 9.5E-106 T 14-10-2018 YP_0475 a9065623a555437f33290757e7e0479e 468 Pfam PF03796 DnaB-like helicase C terminal domain 203 459 2.2E-111 T 14-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 YP_0475 a9065623a555437f33290757e7e0479e 468 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 23 461 1.3E-174 T 14-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 YP_0475 a9065623a555437f33290757e7e0479e 468 SMART SM00382 220 426 3.2E-4 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2426 f547a3b3627e15553c14402ede9d2916 164 Gene3D G3DSA:2.40.50.140 30 143 3.4E-43 T 14-10-2018 YP_2426 f547a3b3627e15553c14402ede9d2916 164 SUPERFAMILY SSF82093 30 143 3.27E-41 T 14-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 YP_2426 f547a3b3627e15553c14402ede9d2916 164 Pfam PF03100 CcmE 4 137 1.2E-44 T 14-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 YP_2426 f547a3b3627e15553c14402ede9d2916 164 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 147 32.157 T 14-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 YP_1803 4d6d4aedbf8a1c10dbff890893dd3bfb 1268 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 821 1268 8.9E-79 T 14-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YP_1803 4d6d4aedbf8a1c10dbff890893dd3bfb 1268 SUPERFAMILY SSF103515 951 1268 1.57E-39 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_1803 4d6d4aedbf8a1c10dbff890893dd3bfb 1268 Gene3D G3DSA:2.40.128.130 943 1268 9.3E-64 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_1803 4d6d4aedbf8a1c10dbff890893dd3bfb 1268 Pfam PF03797 Autotransporter beta-domain 992 1244 1.4E-34 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_1803 4d6d4aedbf8a1c10dbff890893dd3bfb 1268 SUPERFAMILY SSF51126 390 934 6.59E-36 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor YP_1803 4d6d4aedbf8a1c10dbff890893dd3bfb 1268 Gene3D G3DSA:2.160.20.20 749 936 4.4E-36 T 14-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YP_1803 4d6d4aedbf8a1c10dbff890893dd3bfb 1268 SMART SM00869 989 1253 8.1E-35 T 14-10-2018 IPR005546 Autotransporter beta-domain YP_2108 131664239c0a6d655d00dad4f92021d5 123 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 27 115 3.0E-23 T 14-10-2018 IPR009241 Toxin HigB-like YP_1131 ffaa68bb9c29adbdd3a8de8aa7dac224 378 SUPERFAMILY SSF51735 4 159 1.91E-45 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1131 ffaa68bb9c29adbdd3a8de8aa7dac224 378 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 131 1.5E-23 T 14-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 YP_1131 ffaa68bb9c29adbdd3a8de8aa7dac224 378 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 143 259 5.1E-6 T 14-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 YP_1131 ffaa68bb9c29adbdd3a8de8aa7dac224 378 Gene3D G3DSA:3.40.50.720 1 132 2.7E-36 T 14-10-2018 YP_1131 ffaa68bb9c29adbdd3a8de8aa7dac224 378 SUPERFAMILY SSF55347 136 324 6.87E-33 T 14-10-2018 YP_1131 ffaa68bb9c29adbdd3a8de8aa7dac224 378 Gene3D G3DSA:3.30.360.10 133 374 4.6E-63 T 14-10-2018 YP_3245 c78ceb540218db4e21498e0b6305e5c0 243 PIRSF PIRSF039137 7 243 1.8E-102 T 14-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 YP_3245 c78ceb540218db4e21498e0b6305e5c0 243 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3245 c78ceb540218db4e21498e0b6305e5c0 243 Pfam PF00005 ABC transporter 27 171 1.8E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3245 c78ceb540218db4e21498e0b6305e5c0 243 SUPERFAMILY SSF52540 10 240 2.66E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3245 c78ceb540218db4e21498e0b6305e5c0 243 Gene3D G3DSA:3.40.50.300 7 243 9.8E-65 T 14-10-2018 YP_3245 c78ceb540218db4e21498e0b6305e5c0 243 SMART SM00382 36 222 1.3E-4 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2998 435e4d8f94fc7cf0a0ebd4395866feb5 143 Gene3D G3DSA:3.30.420.270 63 132 1.9E-28 T 14-10-2018 YP_2998 435e4d8f94fc7cf0a0ebd4395866feb5 143 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 133 1.3E-29 T 14-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 YP_2998 435e4d8f94fc7cf0a0ebd4395866feb5 143 TIGRFAM TIGR02803 ExbD_1: TonB system transport protein ExbD 16 136 1.7E-64 T 14-10-2018 IPR014170 TonB system transport protein ExbD type-1 GO:0016020|GO:0055085 YP_1907 ab68619eae173fe7b6c701eff9be696b 480 Gene3D G3DSA:3.40.1380.20 342 474 2.8E-152 T 14-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_1907 ab68619eae173fe7b6c701eff9be696b 480 Gene3D G3DSA:2.40.33.10 74 172 2.8E-152 T 14-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_1907 ab68619eae173fe7b6c701eff9be696b 480 SUPERFAMILY SSF50800 74 168 3.31E-24 T 14-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily YP_1907 ab68619eae173fe7b6c701eff9be696b 480 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 479 1.7E-169 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_1907 ab68619eae173fe7b6c701eff9be696b 480 SUPERFAMILY SSF52935 329 479 3.14E-38 T 14-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_1907 ab68619eae173fe7b6c701eff9be696b 480 Pfam PF00224 Pyruvate kinase, barrel domain 6 344 5.6E-131 T 14-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_1907 ab68619eae173fe7b6c701eff9be696b 480 SUPERFAMILY SSF51621 4 344 1.61E-87 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YP_1907 ab68619eae173fe7b6c701eff9be696b 480 Pfam PF02887 Pyruvate kinase, alpha/beta domain 363 477 7.0E-29 T 14-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_1907 ab68619eae173fe7b6c701eff9be696b 480 ProSitePatterns PS00110 Pyruvate kinase active site signature. 218 230 - T 14-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_1907 ab68619eae173fe7b6c701eff9be696b 480 Gene3D G3DSA:3.20.20.60 6 341 2.8E-152 T 14-10-2018 YP_1907 ab68619eae173fe7b6c701eff9be696b 480 PRINTS PR01050 Pyruvate kinase family signature 300 318 6.3E-52 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_1907 ab68619eae173fe7b6c701eff9be696b 480 PRINTS PR01050 Pyruvate kinase family signature 63 79 6.3E-52 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_1907 ab68619eae173fe7b6c701eff9be696b 480 PRINTS PR01050 Pyruvate kinase family signature 275 299 6.3E-52 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_1907 ab68619eae173fe7b6c701eff9be696b 480 PRINTS PR01050 Pyruvate kinase family signature 250 274 6.3E-52 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_1907 ab68619eae173fe7b6c701eff9be696b 480 PRINTS PR01050 Pyruvate kinase family signature 190 204 6.3E-52 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_1907 ab68619eae173fe7b6c701eff9be696b 480 PRINTS PR01050 Pyruvate kinase family signature 223 249 6.3E-52 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_1907 ab68619eae173fe7b6c701eff9be696b 480 PRINTS PR01050 Pyruvate kinase family signature 319 335 6.3E-52 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YP_0241 d4cf90fd31b813b10be26cf62e8f9fb6 373 SUPERFAMILY SSF102405 76 281 2.14E-41 T 14-10-2018 YP_0241 d4cf90fd31b813b10be26cf62e8f9fb6 373 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 64 282 1.3E-82 T 14-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 YP_0241 d4cf90fd31b813b10be26cf62e8f9fb6 373 Pfam PF02481 DNA recombination-mediator protein A 68 274 4.9E-76 T 14-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 YP_0241 d4cf90fd31b813b10be26cf62e8f9fb6 373 Gene3D G3DSA:3.40.50.450 2 285 5.0E-89 T 14-10-2018 YP_0059 2ed90466db4a9952e6b9eb0c46b3208a 313 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 4 312 49.153 T 14-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 YP_0059 2ed90466db4a9952e6b9eb0c46b3208a 313 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 5 311 7.6E-136 T 14-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 YP_0059 2ed90466db4a9952e6b9eb0c46b3208a 313 SUPERFAMILY SSF51735 4 309 5.04E-65 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_0059 2ed90466db4a9952e6b9eb0c46b3208a 313 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 239 9.6E-47 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YP_0059 2ed90466db4a9952e6b9eb0c46b3208a 313 Gene3D G3DSA:3.90.25.10 171 293 1.3E-120 T 14-10-2018 YP_0059 2ed90466db4a9952e6b9eb0c46b3208a 313 Gene3D G3DSA:3.40.50.720 6 305 1.3E-120 T 14-10-2018 YP_1467 983fa8fef9598a6fda3cfb91ac639749 330 Gene3D G3DSA:3.40.190.170 33 330 1.2E-112 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily YP_1467 983fa8fef9598a6fda3cfb91ac639749 330 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 36 315 7.6E-71 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 YP_1467 983fa8fef9598a6fda3cfb91ac639749 330 PIRSF PIRSF006470 5 330 2.8E-97 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 YP_1467 983fa8fef9598a6fda3cfb91ac639749 330 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 39 291 8.4E-63 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 YP_3494 780ed3246a843a13aa7b45e6dbd7a8c6 3110 Pfam PF11713 Peptidase C80 family 1084 1260 1.1E-31 T 14-10-2018 IPR020974 CGT/MARTX, cysteine protease (CPD) domain YP_3494 780ed3246a843a13aa7b45e6dbd7a8c6 3110 Pfam PF11713 Peptidase C80 family 772 926 4.7E-36 T 14-10-2018 IPR020974 CGT/MARTX, cysteine protease (CPD) domain YP_3494 780ed3246a843a13aa7b45e6dbd7a8c6 3110 Gene3D G3DSA:3.40.50.11050 1053 1279 8.0E-60 T 14-10-2018 IPR038383 CGT/MARTX, cysteine protease (CPD) domain superfamily YP_3494 780ed3246a843a13aa7b45e6dbd7a8c6 3110 Gene3D G3DSA:3.40.50.11050 740 953 2.0E-7 T 14-10-2018 IPR038383 CGT/MARTX, cysteine protease (CPD) domain superfamily YP_3494 780ed3246a843a13aa7b45e6dbd7a8c6 3110 SUPERFAMILY SSF51120 2163 2575 1.5E-12 T 14-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YP_3494 780ed3246a843a13aa7b45e6dbd7a8c6 3110 SUPERFAMILY SSF51120 2639 2762 3.14E-8 T 14-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YP_3494 780ed3246a843a13aa7b45e6dbd7a8c6 3110 SUPERFAMILY SSF69318 1791 2059 2.35E-17 T 14-10-2018 YP_3494 780ed3246a843a13aa7b45e6dbd7a8c6 3110 Gene3D G3DSA:2.150.10.10 2163 2382 6.8E-10 T 14-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YP_3494 780ed3246a843a13aa7b45e6dbd7a8c6 3110 Gene3D G3DSA:2.150.10.10 2485 2611 8.2E-6 T 14-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YP_3494 780ed3246a843a13aa7b45e6dbd7a8c6 3110 Gene3D G3DSA:2.150.10.10 2638 2769 4.4E-10 T 14-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YP_3265 d2e796ea028d155f0b0877db6d40556b 605 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 419 540 1.5E-27 T 14-10-2018 IPR025299 CstA, C-terminal domain YP_3265 d2e796ea028d155f0b0877db6d40556b 605 Pfam PF02554 Carbon starvation protein CstA 6 369 4.7E-138 T 14-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 YP_0366 7eb7568ab647f820bc9e2f6e16620897 127 SUPERFAMILY SSF47175 22 127 1.21E-35 T 14-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 YP_0366 7eb7568ab647f820bc9e2f6e16620897 127 Gene3D G3DSA:1.20.120.10 17 127 3.2E-42 T 14-10-2018 YP_0366 7eb7568ab647f820bc9e2f6e16620897 127 PIRSF PIRSF000029 1 127 5.0E-61 T 14-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 YP_0366 7eb7568ab647f820bc9e2f6e16620897 127 Pfam PF07361 Cytochrome b562 23 127 1.3E-27 T 14-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 YP_0494 93ea560bc63585b895ee6eca404dd2d5 191 Gene3D G3DSA:1.10.357.10 1 183 1.2E-27 T 14-10-2018 YP_0494 93ea560bc63585b895ee6eca404dd2d5 191 SUPERFAMILY SSF46689 3 66 8.72E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0494 93ea560bc63585b895ee6eca404dd2d5 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 49 3.5E-6 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YP_0494 93ea560bc63585b895ee6eca404dd2d5 191 SUPERFAMILY SSF48498 74 157 6.67E-5 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YP_0345 de8440d5690e6705144ac3503cf3410c 459 Pfam PF14376 Haem-binding domain 17 148 1.0E-32 T 14-10-2018 IPR025992 Haem-binding domain YP_0345 de8440d5690e6705144ac3503cf3410c 459 Gene3D G3DSA:1.10.760.10 178 455 3.3E-106 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 YP_0345 de8440d5690e6705144ac3503cf3410c 459 Pfam PF00034 Cytochrome c 335 451 4.7E-7 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_0345 de8440d5690e6705144ac3503cf3410c 459 SUPERFAMILY SSF46626 316 455 2.01E-37 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 YP_0345 de8440d5690e6705144ac3503cf3410c 459 SUPERFAMILY SSF46626 165 315 1.26E-46 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 YP_0345 de8440d5690e6705144ac3503cf3410c 459 Pfam PF03150 Di-haem cytochrome c peroxidase 180 327 1.9E-49 T 14-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 YP_0345 de8440d5690e6705144ac3503cf3410c 459 SMART SM01235 14 151 3.2E-48 T 14-10-2018 IPR025992 Haem-binding domain YP_0345 de8440d5690e6705144ac3503cf3410c 459 Gene3D G3DSA:1.10.760.10 180 327 3.3E-106 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 YP_1663 cc5e869bc9991fbbe4a22bbbcaaa4411 863 Pfam PF13953 PapC C-terminal domain 771 842 1.4E-20 T 14-10-2018 IPR025949 PapC-like, C-terminal domain YP_1663 cc5e869bc9991fbbe4a22bbbcaaa4411 863 Gene3D G3DSA:2.60.40.2070 768 861 8.6E-15 T 14-10-2018 YP_1663 cc5e869bc9991fbbe4a22bbbcaaa4411 863 Gene3D G3DSA:2.60.40.2610 677 767 5.8E-29 T 14-10-2018 YP_1663 cc5e869bc9991fbbe4a22bbbcaaa4411 863 Pfam PF13954 PapC N-terminal domain 34 173 7.6E-35 T 14-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 YP_1663 cc5e869bc9991fbbe4a22bbbcaaa4411 863 Gene3D G3DSA:2.60.40.3110 262 351 6.0E-36 T 14-10-2018 YP_1663 cc5e869bc9991fbbe4a22bbbcaaa4411 863 Pfam PF00577 Outer membrane usher protein 192 762 8.0E-142 T 14-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YP_1663 cc5e869bc9991fbbe4a22bbbcaaa4411 863 SUPERFAMILY SSF141729 31 151 1.31E-26 T 14-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 YP_1663 cc5e869bc9991fbbe4a22bbbcaaa4411 863 Gene3D G3DSA:3.10.20.410 31 151 4.8E-24 T 14-10-2018 YP_0865 bfd8d43c161474d9b7fc74835a4ac449 309 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 265 291 - T 14-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 YP_0865 bfd8d43c161474d9b7fc74835a4ac449 309 Pfam PF01148 Cytidylyltransferase family 43 307 3.7E-63 T 14-10-2018 YP_0784 8ea7203f0bf97a9feeda5ba653de1696 346 Gene3D G3DSA:3.40.50.1100 49 155 6.1E-69 T 14-10-2018 YP_0784 8ea7203f0bf97a9feeda5ba653de1696 346 SUPERFAMILY SSF53686 21 334 3.67E-70 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_0784 8ea7203f0bf97a9feeda5ba653de1696 346 Gene3D G3DSA:3.40.50.1100 22 322 6.1E-69 T 14-10-2018 YP_0784 8ea7203f0bf97a9feeda5ba653de1696 346 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 22 314 8.3E-45 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YP_3937 9c800847b7bee76157a385bab0e43eb0 162 SUPERFAMILY SSF47413 44 110 3.49E-15 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_3937 9c800847b7bee76157a385bab0e43eb0 162 Pfam PF01381 Helix-turn-helix 49 103 1.9E-13 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_3937 9c800847b7bee76157a385bab0e43eb0 162 SMART SM00530 48 103 2.3E-13 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_3937 9c800847b7bee76157a385bab0e43eb0 162 Gene3D G3DSA:1.10.260.40 45 148 2.3E-18 T 14-10-2018 YP_pCD44 1b6ba43e89b0f2d6932286abc2a5f57d 293 TIGRFAM TIGR02568 LcrE: type III secretion regulator YopN/LcrE/InvE/MxiC 36 280 4.0E-43 T 14-10-2018 IPR013401 Type III secretion regulator, YopN/LcrE/InvE/MxiC GO:0009986|GO:0030254|GO:0050709 YP_pCD44 1b6ba43e89b0f2d6932286abc2a5f57d 293 Pfam PF07201 HrpJ-like domain 60 223 3.2E-38 T 14-10-2018 IPR010812 Hypersensitivity response secretion-like, HrpJ GO:0009405|GO:0019867|GO:0046903 YP_pCD44 1b6ba43e89b0f2d6932286abc2a5f57d 293 SUPERFAMILY SSF140591 74 268 1.53E-53 T 14-10-2018 YP_3491 51cd6ebe7236f4bb3339fc0684b53e87 108 Pfam PF04320 Protein with unknown function (DUF469) 7 107 1.6E-43 T 14-10-2018 IPR007416 Protein of unknown function DUF469 YP_0145 5937ed14835c5ee182f1e8e0895a523b 181 Gene3D G3DSA:3.90.79.10 7 181 6.0E-43 T 14-10-2018 YP_0145 5937ed14835c5ee182f1e8e0895a523b 181 Pfam PF00293 NUDIX domain 46 139 1.1E-13 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YP_0145 5937ed14835c5ee182f1e8e0895a523b 181 SUPERFAMILY SSF55811 3 179 9.88E-37 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YP_0145 5937ed14835c5ee182f1e8e0895a523b 181 ProSitePatterns PS00893 Nudix box signature. 79 100 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YP_2082 3b995a3ad09954c69fba0d4f24a3fa38 798 SUPERFAMILY SSF158682 546 659 6.41E-15 T 14-10-2018 IPR029024 TerB-like YP_2082 3b995a3ad09954c69fba0d4f24a3fa38 798 Pfam PF13208 TerB N-terminal domain 131 333 8.2E-50 T 14-10-2018 IPR025266 TerB, N-terminal YP_2082 3b995a3ad09954c69fba0d4f24a3fa38 798 Pfam PF15615 TerB-C domain 682 795 4.6E-7 T 14-10-2018 IPR028932 TerB-C domain YP_0633 568ab0242c5bea8ce13b90018421c481 302 Pfam PF00005 ABC transporter 32 201 3.4E-21 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0633 568ab0242c5bea8ce13b90018421c481 302 SMART SM00382 39 251 5.3E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0633 568ab0242c5bea8ce13b90018421c481 302 Gene3D G3DSA:3.40.50.300 13 293 1.6E-66 T 14-10-2018 YP_0633 568ab0242c5bea8ce13b90018421c481 302 SUPERFAMILY SSF52540 20 255 1.39E-49 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1905 44defdb5e381c8851e8b96979b05cb02 438 Gene3D G3DSA:3.10.450.350 178 280 2.5E-31 T 14-10-2018 YP_1905 44defdb5e381c8851e8b96979b05cb02 438 Gene3D G3DSA:2.70.70.10 282 411 9.2E-48 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_1905 44defdb5e381c8851e8b96979b05cb02 438 Pfam PF04225 Opacity-associated protein A LysM-like domain 95 159 1.6E-6 T 14-10-2018 IPR007340 Opacity-associated protein A YP_1905 44defdb5e381c8851e8b96979b05cb02 438 SUPERFAMILY SSF51261 162 406 1.31E-69 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_1905 44defdb5e381c8851e8b96979b05cb02 438 Pfam PF01551 Peptidase family M23 311 405 1.3E-33 T 14-10-2018 IPR016047 Peptidase M23 YP_1905 44defdb5e381c8851e8b96979b05cb02 438 Gene3D G3DSA:3.10.450.350 83 173 2.6E-12 T 14-10-2018 YP_1905 44defdb5e381c8851e8b96979b05cb02 438 SMART SM00257 96 141 2.9E-5 T 14-10-2018 IPR018392 LysM domain YP_1905 44defdb5e381c8851e8b96979b05cb02 438 Pfam PF08525 Opacity-associated protein A N-terminal motif 12 39 5.9E-8 T 14-10-2018 IPR013731 Opacity-associated protein A, N-terminal YP_2640 26849615a7bc986ec7659eedf6222bc7 510 SUPERFAMILY SSF103473 20 469 1.44E-67 T 14-10-2018 IPR036259 MFS transporter superfamily YP_2640 26849615a7bc986ec7659eedf6222bc7 510 Hamap MF_01238 Sialic acid transporter NanT [nanT]. 15 510 50.57 T 14-10-2018 IPR004742 Sialic acid transporter GO:0015136|GO:0015739|GO:0016021 YP_2640 26849615a7bc986ec7659eedf6222bc7 510 Gene3D G3DSA:1.20.1250.20 25 231 8.8E-39 T 14-10-2018 YP_2640 26849615a7bc986ec7659eedf6222bc7 510 Pfam PF07690 Major Facilitator Superfamily 39 308 9.2E-30 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_2640 26849615a7bc986ec7659eedf6222bc7 510 Gene3D G3DSA:1.20.1250.20 290 473 5.4E-21 T 14-10-2018 YP_0071 3041a067c6432df7fbb21df9ac446e74 162 Pfam PF00588 SpoU rRNA Methylase family 2 147 6.0E-33 T 14-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 YP_0071 3041a067c6432df7fbb21df9ac446e74 162 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 157 6.0E-71 T 14-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 YP_0071 3041a067c6432df7fbb21df9ac446e74 162 Gene3D G3DSA:3.40.1280.10 1 162 3.7E-77 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YP_0071 3041a067c6432df7fbb21df9ac446e74 162 SUPERFAMILY SSF75217 1 157 7.19E-43 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases YP_0071 3041a067c6432df7fbb21df9ac446e74 162 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 156 34.168 T 14-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 YP_0071 3041a067c6432df7fbb21df9ac446e74 162 PIRSF PIRSF029256 1 159 3.7E-71 T 14-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 YP_1448 8a0f2581aa5a809d0ab8708f1d3428b0 105 Pfam PF04363 Protein of unknown function (DUF496) 9 100 3.8E-47 T 14-10-2018 IPR007458 Protein of unknown function DUF496 YP_1448 8a0f2581aa5a809d0ab8708f1d3428b0 105 Hamap MF_00683 UPF0265 protein YeeX [yeeX]. 9 103 25.92 T 14-10-2018 IPR007458 Protein of unknown function DUF496 YP_1448 8a0f2581aa5a809d0ab8708f1d3428b0 105 PIRSF PIRSF028773 1 105 9.7E-51 T 14-10-2018 IPR007458 Protein of unknown function DUF496 YP_1448 8a0f2581aa5a809d0ab8708f1d3428b0 105 ProDom PD030876 UPF0265 YEEX HELIX ALPHA BFL460 UNCHARACTERIZED FN0411 HI1168 VPA1226 BCR 12 99 3.0E-43 T 14-10-2018 IPR007458 Protein of unknown function DUF496 YP_2825 0a1b0c77d65c761398e6f507b11222af 275 SUPERFAMILY SSF69572 6 259 1.15E-63 T 14-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 YP_2825 0a1b0c77d65c761398e6f507b11222af 275 Pfam PF00899 ThiF family 24 262 9.6E-39 T 14-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 YP_2825 0a1b0c77d65c761398e6f507b11222af 275 Gene3D G3DSA:3.40.50.720 1 274 9.4E-113 T 14-10-2018 YP_2287 db3222318269029178b4d41cb7de7d54 336 TIGRFAM TIGR03637 cas1_YPEST: CRISPR-associated endonuclease Cas1, subtype I-F/YPEST 23 328 1.5E-164 T 14-10-2018 IPR019857 CRISPR-associated protein Cas1, YPEST subtype GO:0004520|GO:0043571|GO:0046872 YP_2287 db3222318269029178b4d41cb7de7d54 336 Pfam PF01867 CRISPR associated protein Cas1 48 286 1.6E-9 T 14-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 YP_2287 db3222318269029178b4d41cb7de7d54 336 Gene3D G3DSA:3.100.10.20 22 124 8.1E-49 T 14-10-2018 YP_2287 db3222318269029178b4d41cb7de7d54 336 Gene3D G3DSA:1.20.120.920 125 334 2.4E-64 T 14-10-2018 YP_2287 db3222318269029178b4d41cb7de7d54 336 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 30 334 9.2E-79 T 14-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 YP_2337 c59c77e314d5d43c2209d2040ad09a9f 272 Gene3D G3DSA:3.40.50.1820 14 261 4.0E-59 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_2337 c59c77e314d5d43c2209d2040ad09a9f 272 Pfam PF12697 Alpha/beta hydrolase family 25 253 4.1E-15 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YP_2337 c59c77e314d5d43c2209d2040ad09a9f 272 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 18 260 34.809 T 14-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 YP_2337 c59c77e314d5d43c2209d2040ad09a9f 272 SUPERFAMILY SSF53474 20 261 6.24E-42 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_2337 c59c77e314d5d43c2209d2040ad09a9f 272 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 22 259 1.0E-83 T 14-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 YP_2597 7eb6082b034830302b3a1765abdeedae 244 SUPERFAMILY SSF52964 65 165 5.89E-9 T 14-10-2018 YP_2597 7eb6082b034830302b3a1765abdeedae 244 Gene3D G3DSA:3.40.50.10610 81 244 2.4E-5 T 14-10-2018 YP_2597 7eb6082b034830302b3a1765abdeedae 244 Pfam PF03783 Curli production assembly/transport component CsgG 64 242 2.9E-33 T 14-10-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 YP_3871 508744aaee281563a65ca4e471e14284 943 Gene3D G3DSA:3.90.190.10 771 942 5.4E-11 T 14-10-2018 IPR029021 Protein-tyrosine phosphatase-like YP_3871 508744aaee281563a65ca4e471e14284 943 Gene3D G3DSA:2.180.10.10 6 669 5.7E-235 T 14-10-2018 YP_3871 508744aaee281563a65ca4e471e14284 943 Pfam PF00782 Dual specificity phosphatase, catalytic domain 818 877 2.2E-9 T 14-10-2018 IPR000340 Dual specificity phosphatase, catalytic domain GO:0008138|GO:0016311 YP_3871 508744aaee281563a65ca4e471e14284 943 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 853 863 - T 14-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 YP_3871 508744aaee281563a65ca4e471e14284 943 SUPERFAMILY SSF52799 754 876 2.31E-12 T 14-10-2018 IPR029021 Protein-tyrosine phosphatase-like YP_3871 508744aaee281563a65ca4e471e14284 943 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 221 249 3.0E-4 T 14-10-2018 IPR006530 YD repeat YP_3871 508744aaee281563a65ca4e471e14284 943 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 589 669 1.4E-26 T 14-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 YP_1952 e5bcadd6f0960c64ca7f7deed01cb57f 373 Pfam PF00892 EamA-like transporter family 164 292 1.0E-7 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_1952 e5bcadd6f0960c64ca7f7deed01cb57f 373 Pfam PF00892 EamA-like transporter family 11 145 3.6E-20 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_1952 e5bcadd6f0960c64ca7f7deed01cb57f 373 SUPERFAMILY SSF103481 207 297 5.89E-6 T 14-10-2018 YP_1952 e5bcadd6f0960c64ca7f7deed01cb57f 373 SUPERFAMILY SSF103481 59 148 4.18E-11 T 14-10-2018 YP_0090 bce2a289f2b4b107932c5269e31becf7 211 Pfam PF07305 Protein of unknown function (DUF1454) 18 210 1.0E-83 T 14-10-2018 IPR009918 Protein of unknown function DUF1454 YP_3407 e3f516bf73be6822e9dab291c1c416dd 330 Hamap MF_01949 O-acetyltransferase WecH [wecH]. 1 330 40.228 T 14-10-2018 IPR032905 O-acetyltransferase WecH GO:0009246|GO:0016413 YP_3407 e3f516bf73be6822e9dab291c1c416dd 330 Pfam PF01757 Acyltransferase family 6 317 8.9E-31 T 14-10-2018 IPR002656 Acyltransferase 3 GO:0016747 YP_2859 57d9061cc481929422c9cf91c7e35c75 386 Gene3D G3DSA:1.20.1250.20 198 380 1.0E-13 T 14-10-2018 YP_2859 57d9061cc481929422c9cf91c7e35c75 386 Gene3D G3DSA:1.20.1250.20 3 197 4.6E-34 T 14-10-2018 YP_2859 57d9061cc481929422c9cf91c7e35c75 386 SUPERFAMILY SSF103473 3 378 4.05E-57 T 14-10-2018 IPR036259 MFS transporter superfamily YP_2859 57d9061cc481929422c9cf91c7e35c75 386 Pfam PF07690 Major Facilitator Superfamily 8 313 1.5E-40 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_3948 9856462b037abac14fabf151818d92dc 468 Pfam PF16989 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ 221 460 6.5E-78 T 14-10-2018 IPR017739 Type VI secretion system-associated, VCA0119 YP_3948 9856462b037abac14fabf151818d92dc 468 Pfam PF06812 ImpA, N-terminal, type VI secretion system 21 118 1.9E-11 T 14-10-2018 IPR010657 ImpA, N-terminal YP_3948 9856462b037abac14fabf151818d92dc 468 TIGRFAM TIGR03362 VI_chp_7: type VI secretion-associated protein, VC_A0119 family 15 463 1.4E-158 T 14-10-2018 IPR017739 Type VI secretion system-associated, VCA0119 YP_1695 b399639e43cdf42ef4e75da237b7b742 843 SUPERFAMILY SSF103515 626 843 7.32E-5 T 14-10-2018 IPR036709 Autotransporter beta-domain superfamily YP_1695 b399639e43cdf42ef4e75da237b7b742 843 TIGRFAM TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA 38 843 0.0 T 14-10-2018 IPR023870 Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA GO:1901515 YP_1695 b399639e43cdf42ef4e75da237b7b742 843 Gene3D G3DSA:1.25.40.10 40 319 7.4E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_1695 b399639e43cdf42ef4e75da237b7b742 843 SUPERFAMILY SSF48452 128 502 2.32E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2746 8c6357778146afa3e368177c3a901968 345 Hamap MF_02017 Cytoskeleton protein RodZ [rodZ]. 1 345 42.681 T 14-10-2018 IPR023690 Cytoskeleton protein RodZ GO:0008360|GO:0016021 YP_2746 8c6357778146afa3e368177c3a901968 345 Pfam PF13413 Helix-turn-helix domain 18 79 2.2E-15 T 14-10-2018 YP_2746 8c6357778146afa3e368177c3a901968 345 Pfam PF13464 Domain of unknown function (DUF4115) 268 342 8.3E-24 T 14-10-2018 IPR025194 Domain of unknown function DUF4115 YP_2746 8c6357778146afa3e368177c3a901968 345 SUPERFAMILY SSF47413 12 81 4.29E-9 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_2746 8c6357778146afa3e368177c3a901968 345 SMART SM00530 18 79 1.7E-6 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_2746 8c6357778146afa3e368177c3a901968 345 Gene3D G3DSA:1.10.260.40 4 111 6.3E-21 T 14-10-2018 YP_2366 f37b80ecd176906fec926960d025c8bd 166 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 9 126 19.929 T 14-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 YP_2366 f37b80ecd176906fec926960d025c8bd 166 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 29 125 3.0E-31 T 14-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2366 f37b80ecd176906fec926960d025c8bd 166 Gene3D G3DSA:1.20.58.1610 1 126 8.9E-43 T 14-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2663 3c03ff1a8a29407ae5654afd5049cab3 167 Gene3D G3DSA:3.30.70.20 99 166 3.7E-10 T 14-10-2018 YP_2663 3c03ff1a8a29407ae5654afd5049cab3 167 Pfam PF13187 4Fe-4S dicluster domain 39 84 1.1E-6 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2663 3c03ff1a8a29407ae5654afd5049cab3 167 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 143 154 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2663 3c03ff1a8a29407ae5654afd5049cab3 167 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 39 50 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_2663 3c03ff1a8a29407ae5654afd5049cab3 167 Hamap MF_02201 Ferredoxin-type protein NapF [napF]. 27 164 23.345 T 14-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 YP_2663 3c03ff1a8a29407ae5654afd5049cab3 167 Pfam PF12838 4Fe-4S dicluster domain 110 157 4.3E-8 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_2663 3c03ff1a8a29407ae5654afd5049cab3 167 SUPERFAMILY SSF54862 33 161 6.91E-20 T 14-10-2018 YP_2663 3c03ff1a8a29407ae5654afd5049cab3 167 TIGRFAM TIGR00402 napF: ferredoxin-type protein NapF 6 159 1.1E-46 T 14-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 YP_2663 3c03ff1a8a29407ae5654afd5049cab3 167 Gene3D G3DSA:3.30.70.20 37 87 7.3E-7 T 14-10-2018 YP_0323 486a843dfd35b21521f04294f0792dab 234 Pfam PF01583 Adenylylsulphate kinase 60 212 2.5E-72 T 14-10-2018 YP_0323 486a843dfd35b21521f04294f0792dab 234 SUPERFAMILY SSF52540 57 224 4.33E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0323 486a843dfd35b21521f04294f0792dab 234 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 59 230 38.138 T 14-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 YP_0323 486a843dfd35b21521f04294f0792dab 234 Gene3D G3DSA:3.40.50.300 38 234 3.2E-78 T 14-10-2018 YP_0323 486a843dfd35b21521f04294f0792dab 234 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 43 226 4.5E-86 T 14-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 YP_4032 ed2affadf47d099a67b84bf9a92c5180 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 1.9E-59 T 14-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 YP_4032 ed2affadf47d099a67b84bf9a92c5180 156 SUPERFAMILY SSF81573 63 121 4.58E-15 T 14-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily YP_4032 ed2affadf47d099a67b84bf9a92c5180 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 13.319 T 14-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 YP_4032 ed2affadf47d099a67b84bf9a92c5180 156 Gene3D G3DSA:1.20.5.620 62 122 1.6E-24 T 14-10-2018 YP_4032 ed2affadf47d099a67b84bf9a92c5180 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 137 6.6E-39 T 14-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 YP_2605 4835de8d959760c8ec4d3f33dd9083ee 329 Pfam PF00248 Aldo/keto reductase family 28 328 2.9E-67 T 14-10-2018 IPR023210 NADP-dependent oxidoreductase domain YP_2605 4835de8d959760c8ec4d3f33dd9083ee 329 Gene3D G3DSA:3.20.20.100 15 329 1.1E-117 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_2605 4835de8d959760c8ec4d3f33dd9083ee 329 SUPERFAMILY SSF51430 13 327 5.5E-87 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_1445 0715f5db912ff0c31f3fcbf896a70039 463 Pfam PF13520 Amino acid permease 53 417 1.4E-32 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_1445 0715f5db912ff0c31f3fcbf896a70039 463 PIRSF PIRSF006060 6 457 1.9E-70 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_1445 0715f5db912ff0c31f3fcbf896a70039 463 Gene3D G3DSA:1.20.1740.10 21 456 1.8E-63 T 14-10-2018 YP_1206 07041af84d6aa64005c008422a5f0aae 364 PRINTS PR01756 Yersinia outer membrane adhesin signature 240 255 2.8E-6 T 14-10-2018 IPR008126 Outer membrane adhesion, Yersinia GO:0005518|GO:0007155|GO:0009405|GO:0019867 YP_1206 07041af84d6aa64005c008422a5f0aae 364 PRINTS PR01756 Yersinia outer membrane adhesin signature 267 283 2.8E-6 T 14-10-2018 IPR008126 Outer membrane adhesion, Yersinia GO:0005518|GO:0007155|GO:0009405|GO:0019867 YP_1206 07041af84d6aa64005c008422a5f0aae 364 PRINTS PR01756 Yersinia outer membrane adhesin signature 173 191 2.8E-6 T 14-10-2018 IPR008126 Outer membrane adhesion, Yersinia GO:0005518|GO:0007155|GO:0009405|GO:0019867 YP_1206 07041af84d6aa64005c008422a5f0aae 364 PRINTS PR01756 Yersinia outer membrane adhesin signature 75 95 2.8E-6 T 14-10-2018 IPR008126 Outer membrane adhesion, Yersinia GO:0005518|GO:0007155|GO:0009405|GO:0019867 YP_1206 07041af84d6aa64005c008422a5f0aae 364 SUPERFAMILY SSF54523 274 361 2.35E-17 T 14-10-2018 YP_1206 07041af84d6aa64005c008422a5f0aae 364 Gene3D G3DSA:3.30.1300.30 264 362 5.2E-19 T 14-10-2018 YP_1206 07041af84d6aa64005c008422a5f0aae 364 SUPERFAMILY SSF101967 26 136 1.29E-9 T 14-10-2018 YP_1206 07041af84d6aa64005c008422a5f0aae 364 Pfam PF03895 YadA-like membrane anchor domain 313 361 2.0E-7 T 14-10-2018 IPR005594 YadA-like, C-terminal YP_1206 07041af84d6aa64005c008422a5f0aae 364 Gene3D G3DSA:2.150.10.10 14 140 9.0E-13 T 14-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YP_2775 584ab34b47768699a051cd067dcedfb9 188 Gene3D G3DSA:3.40.50.1000 4 188 1.5E-65 T 14-10-2018 IPR023214 HAD superfamily YP_2775 584ab34b47768699a051cd067dcedfb9 188 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 6 154 6.4E-40 T 14-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 YP_2775 584ab34b47768699a051cd067dcedfb9 188 SUPERFAMILY SSF56784 3 184 4.61E-53 T 14-10-2018 IPR036412 HAD-like superfamily YP_2775 584ab34b47768699a051cd067dcedfb9 188 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 6 181 2.2E-93 T 14-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 YP_2775 584ab34b47768699a051cd067dcedfb9 188 Pfam PF13242 HAD-hyrolase-like 109 179 3.4E-12 T 14-10-2018 YP_2775 584ab34b47768699a051cd067dcedfb9 188 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 7 153 2.9E-37 T 14-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 YP_2775 584ab34b47768699a051cd067dcedfb9 188 PIRSF PIRSF004682 1 188 4.8E-67 T 14-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 YP_1315 6fef2ddeb9af898b3fb3a5b492386e4c 490 Pfam PF00563 EAL domain 236 469 3.7E-65 T 14-10-2018 IPR001633 EAL domain YP_1315 6fef2ddeb9af898b3fb3a5b492386e4c 490 SUPERFAMILY SSF141868 235 482 5.49E-72 T 14-10-2018 IPR035919 EAL domain superfamily YP_1315 6fef2ddeb9af898b3fb3a5b492386e4c 490 Pfam PF12792 CSS motif domain associated with EAL 10 197 9.7E-33 T 14-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain YP_1315 6fef2ddeb9af898b3fb3a5b492386e4c 490 SMART SM00052 229 474 2.4E-83 T 14-10-2018 IPR001633 EAL domain YP_1315 6fef2ddeb9af898b3fb3a5b492386e4c 490 Gene3D G3DSA:3.20.20.450 229 487 1.6E-75 T 14-10-2018 IPR035919 EAL domain superfamily YP_4036 f3d843bdb6e37e96927ba0345300fdad 223 Gene3D G3DSA:3.40.50.150 18 223 1.1E-70 T 14-10-2018 YP_4036 f3d843bdb6e37e96927ba0345300fdad 223 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 30 219 28.589 T 14-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 YP_4036 f3d843bdb6e37e96927ba0345300fdad 223 Pfam PF02527 rRNA small subunit methyltransferase G 37 218 7.3E-62 T 14-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 YP_4036 f3d843bdb6e37e96927ba0345300fdad 223 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 43 221 3.9E-58 T 14-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 YP_4036 f3d843bdb6e37e96927ba0345300fdad 223 SUPERFAMILY SSF53335 20 221 9.12E-42 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_4036 f3d843bdb6e37e96927ba0345300fdad 223 PIRSF PIRSF003078 17 223 7.6E-61 T 14-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 YP_2116 624f8099109caab3808a571829ff4c92 150 Gene3D G3DSA:2.40.128.270 45 145 7.0E-33 T 14-10-2018 IPR038670 HslJ-like superfamily YP_2116 624f8099109caab3808a571829ff4c92 150 Pfam PF03724 META domain 40 140 7.3E-19 T 14-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ YP_0768 a5eee1391819249fd9c562f699351cc8 275 SUPERFAMILY SSF111364 46 275 1.7E-32 T 14-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 YP_0768 a5eee1391819249fd9c562f699351cc8 275 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 54 275 3.9E-53 T 14-10-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 YP_1404 5a2529a4381dd102fa3393a458332795 148 Hamap MF_01144 UPF0299 membrane protein YohJ [yohJ]. 17 136 24.141 T 14-10-2018 IPR022957 Uncharacterised protein family UPF0299 YP_1404 5a2529a4381dd102fa3393a458332795 148 Pfam PF03788 LrgA family 36 126 7.9E-29 T 14-10-2018 IPR005538 LrgA/CidA family GO:0016021 YP_3055 1d7a4ff5bff9f4055bfaa753338a157c 289 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 282 2.1E-111 T 14-10-2018 IPR022522 Flagellar motor stator, MotA YP_3055 1d7a4ff5bff9f4055bfaa753338a157c 289 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 206 223 - T 14-10-2018 IPR000540 Flagellar motor protein MotA, conserved site YP_3055 1d7a4ff5bff9f4055bfaa753338a157c 289 Pfam PF01618 MotA/TolQ/ExbB proton channel family 139 237 1.6E-11 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel YP_3814 1a419096c1a4c706086f70a326962ff3 171 PIRSF PIRSF005276 3 171 4.2E-63 T 14-10-2018 IPR007481 Stringent starvation protein B YP_3814 1a419096c1a4c706086f70a326962ff3 171 SUPERFAMILY SSF101738 3 115 2.35E-48 T 14-10-2018 IPR036760 SspB-like superfamily YP_3814 1a419096c1a4c706086f70a326962ff3 171 Gene3D G3DSA:2.30.30.220 3 129 1.8E-52 T 14-10-2018 IPR036760 SspB-like superfamily YP_3814 1a419096c1a4c706086f70a326962ff3 171 Pfam PF04386 Stringent starvation protein B 9 171 3.6E-43 T 14-10-2018 IPR007481 Stringent starvation protein B YP_0613 0d1ca9dc8a68369b91241bc8c8672b70 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 272 8.4E-22 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_0613 0d1ca9dc8a68369b91241bc8c8672b70 279 Gene3D G3DSA:1.10.3720.10 1 270 4.6E-61 T 14-10-2018 IPR035906 MetI-like superfamily YP_0613 0d1ca9dc8a68369b91241bc8c8672b70 279 SUPERFAMILY SSF161098 3 279 3.74E-66 T 14-10-2018 IPR035906 MetI-like superfamily YP_1196 3d26a7be7a9ff82848c01b8799e2445e 472 Pfam PF07063 Domain of unknown function (DUF1338) 11 418 5.9E-117 T 14-10-2018 IPR009770 Domain of unknown function DUF1338 YP_1196 3d26a7be7a9ff82848c01b8799e2445e 472 SMART SM01150 13 418 1.3E-228 T 14-10-2018 IPR009770 Domain of unknown function DUF1338 YP_1196 3d26a7be7a9ff82848c01b8799e2445e 472 Gene3D G3DSA:3.10.180.80 4 455 3.5E-187 T 14-10-2018 YP_3778 92c906f8691b1100b8a950eb36752943 106 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 5 89 2.8E-38 T 14-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 YP_3778 92c906f8691b1100b8a950eb36752943 106 SUPERFAMILY SSF52794 3 99 1.92E-34 T 14-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 YP_3778 92c906f8691b1100b8a950eb36752943 106 Gene3D G3DSA:3.40.50.2300 1 106 1.0E-39 T 14-10-2018 YP_3778 92c906f8691b1100b8a950eb36752943 106 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 6 96 4.4E-19 T 14-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 YP_2320 d338f55e10d46545b14c747fee601027 312 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 21 288 2.6E-24 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 YP_2320 d338f55e10d46545b14c747fee601027 312 Gene3D G3DSA:1.20.1510.10 19 223 6.0E-24 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily YP_2320 d338f55e10d46545b14c747fee601027 312 SUPERFAMILY SSF161111 16 223 1.07E-34 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily YP_2320 d338f55e10d46545b14c747fee601027 312 Pfam PF01545 Cation efflux family 22 221 5.9E-34 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 YP_3417 a7d92de1321b3b7a9376733edc1b53a3 291 Pfam PF12468 Type III secretion system leucine rich repeat protein 1 59 1.5E-20 T 14-10-2018 IPR032674 LRR-containing bacterial E3 ligase, N-terminal MetaCyc: PWY-7511 YP_3417 a7d92de1321b3b7a9376733edc1b53a3 291 SUPERFAMILY SSF52058 70 272 2.35E-23 T 14-10-2018 YP_3417 a7d92de1321b3b7a9376733edc1b53a3 291 SMART SM00364 129 148 0.68 T 14-10-2018 YP_3417 a7d92de1321b3b7a9376733edc1b53a3 291 SMART SM00364 84 106 100.0 T 14-10-2018 YP_3417 a7d92de1321b3b7a9376733edc1b53a3 291 SMART SM00364 191 210 0.015 T 14-10-2018 YP_3417 a7d92de1321b3b7a9376733edc1b53a3 291 SMART SM00364 108 127 0.019 T 14-10-2018 YP_3417 a7d92de1321b3b7a9376733edc1b53a3 291 SMART SM00364 233 252 6.1 T 14-10-2018 YP_3417 a7d92de1321b3b7a9376733edc1b53a3 291 SMART SM00364 212 231 0.0094 T 14-10-2018 YP_3417 a7d92de1321b3b7a9376733edc1b53a3 291 SMART SM00364 171 190 0.48 T 14-10-2018 YP_3417 a7d92de1321b3b7a9376733edc1b53a3 291 Gene3D G3DSA:3.80.10.10 30 291 2.5E-53 T 14-10-2018 IPR032675 Leucine-rich repeat domain superfamily YP_0106 5e58520ff5d42c4bc7de70debfce7b55 309 Pfam PF01040 UbiA prenyltransferase family 33 280 1.5E-36 T 14-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 YP_0106 5e58520ff5d42c4bc7de70debfce7b55 309 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 13 306 21.099 T 14-10-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 YP_0106 5e58520ff5d42c4bc7de70debfce7b55 309 PIRSF PIRSF005355 5 309 6.0E-87 T 14-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 YP_0106 5e58520ff5d42c4bc7de70debfce7b55 309 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 22 305 9.1E-128 T 14-10-2018 YP_1011 ebf52ca2ce5da50b22947b09da8b0aef 334 SUPERFAMILY SSF50974 5 291 3.01E-54 T 14-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 YP_1011 ebf52ca2ce5da50b22947b09da8b0aef 334 Pfam PF10282 Lactonase, 7-bladed beta-propeller 6 327 9.0E-94 T 14-10-2018 IPR019405 Lactonase, 7-bladed beta propeller YP_1011 ebf52ca2ce5da50b22947b09da8b0aef 334 Hamap MF_01605 6-phosphogluconolactonase [pgl]. 1 331 58.26 T 14-10-2018 IPR022528 6-phosphogluconolactonase, YbhE-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 YP_1011 ebf52ca2ce5da50b22947b09da8b0aef 334 Gene3D G3DSA:2.130.10.10 1 334 1.9E-122 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 YP_0451 dd8c8ac74dd349732831d7b5b8d9d81c 353 SUPERFAMILY SSF56059 109 314 4.28E-20 T 14-10-2018 YP_0451 dd8c8ac74dd349732831d7b5b8d9d81c 353 PIRSF PIRSF029120 1 353 3.1E-175 T 14-10-2018 IPR011226 ATP-grasp family YP_0451 dd8c8ac74dd349732831d7b5b8d9d81c 353 Gene3D G3DSA:3.30.470.20 109 351 1.2E-11 T 14-10-2018 YP_0451 dd8c8ac74dd349732831d7b5b8d9d81c 353 Pfam PF15632 ATP-grasp in the biosynthetic pathway with Ter operon 4 340 3.8E-109 T 14-10-2018 IPR011226 ATP-grasp family YP_3172 277a0af37b7a964afd89a9cd49b5c984 98 SUPERFAMILY SSF54534 8 95 2.29E-30 T 14-10-2018 YP_3172 277a0af37b7a964afd89a9cd49b5c984 98 Pfam PF13616 PPIC-type PPIASE domain 16 95 9.5E-25 T 14-10-2018 YP_3172 277a0af37b7a964afd89a9cd49b5c984 98 Gene3D G3DSA:3.10.50.40 7 98 3.2E-37 T 14-10-2018 YP_2676 8e852d8205511c02c361c5cd679e614e 225 Gene3D G3DSA:3.30.1380.10 3 196 1.8E-33 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YP_2676 8e852d8205511c02c361c5cd679e614e 225 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 26 181 8.2E-38 T 14-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 YP_2676 8e852d8205511c02c361c5cd679e614e 225 SUPERFAMILY SSF55166 21 182 1.37E-20 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YP_2910 429c14b5f2cc29444be02b49f7299799 189 PRINTS PR01077 Claudin family signature 16 38 2.4E-5 T 14-10-2018 YP_2910 429c14b5f2cc29444be02b49f7299799 189 PRINTS PR01077 Claudin family signature 47 68 2.4E-5 T 14-10-2018 YP_2910 429c14b5f2cc29444be02b49f7299799 189 Pfam PF03729 Short repeat of unknown function (DUF308) 26 97 4.7E-13 T 14-10-2018 IPR005325 Protein of unknown function DUF308, membrane YP_2910 429c14b5f2cc29444be02b49f7299799 189 Pfam PF03729 Short repeat of unknown function (DUF308) 84 152 1.9E-11 T 14-10-2018 IPR005325 Protein of unknown function DUF308, membrane YP_2151 50ee570cc0dc1171a3bce4fd3aa2ef06 196 Pfam PF06930 Protein of unknown function (DUF1282) 8 179 8.5E-47 T 14-10-2018 IPR009698 Protein of unknown function DUF1282 YP_3652 cdeb1c94b04323ae3b595b877d1297fe 200 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 199 44.959 T 14-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 YP_3652 cdeb1c94b04323ae3b595b877d1297fe 200 SUPERFAMILY SSF52016 3 197 3.34E-60 T 14-10-2018 YP_3652 cdeb1c94b04323ae3b595b877d1297fe 200 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 188 1.4E-97 T 14-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 YP_3652 cdeb1c94b04323ae3b595b877d1297fe 200 Pfam PF00694 Aconitase C-terminal domain 1 125 7.0E-39 T 14-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 YP_3652 cdeb1c94b04323ae3b595b877d1297fe 200 Gene3D G3DSA:3.20.19.10 1 180 7.5E-77 T 14-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 SUPERFAMILY SSF50494 3 303 2.65E-64 T 14-10-2018 IPR009003 Peptidase S1, PA clan YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 400 470 3.9E-12 T 14-10-2018 IPR001478 PDZ domain GO:0005515 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 Pfam PF13365 Trypsin-like peptidase domain 119 255 2.5E-32 T 14-10-2018 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 Gene3D G3DSA:2.40.10.120 38 288 2.2E-83 T 14-10-2018 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 Gene3D G3DSA:2.30.42.10 292 391 1.4E-26 T 14-10-2018 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 40 479 1.4E-163 T 14-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 PRINTS PR00834 HtrA/DegQ protease family signature 150 170 5.0E-60 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 PRINTS PR00834 HtrA/DegQ protease family signature 129 141 5.0E-60 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 PRINTS PR00834 HtrA/DegQ protease family signature 248 265 5.0E-60 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 PRINTS PR00834 HtrA/DegQ protease family signature 191 215 5.0E-60 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 PRINTS PR00834 HtrA/DegQ protease family signature 226 243 5.0E-60 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 PRINTS PR00834 HtrA/DegQ protease family signature 334 346 5.0E-60 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 SMART SM00228 401 473 5.1E-11 T 14-10-2018 IPR001478 PDZ domain GO:0005515 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 SMART SM00228 294 376 5.5E-12 T 14-10-2018 IPR001478 PDZ domain GO:0005515 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 SUPERFAMILY SSF50156 276 384 2.66E-21 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 Pfam PF13180 PDZ domain 296 385 6.4E-14 T 14-10-2018 IPR001478 PDZ domain GO:0005515 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 Gene3D G3DSA:2.30.42.10 392 481 9.1E-29 T 14-10-2018 YP_0303 02ad6a088413f5baf7a1b318597d08b6 481 SUPERFAMILY SSF50156 412 477 3.81E-15 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 YP_3177 d35a787a906916ffd87744da48c7208c 108 Pfam PF00085 Thioredoxin 5 106 5.2E-34 T 14-10-2018 IPR013766 Thioredoxin domain GO:0045454 YP_3177 d35a787a906916ffd87744da48c7208c 108 PRINTS PR00421 Thioredoxin family signature 24 32 6.1E-10 T 14-10-2018 YP_3177 d35a787a906916ffd87744da48c7208c 108 PRINTS PR00421 Thioredoxin family signature 72 83 6.1E-10 T 14-10-2018 YP_3177 d35a787a906916ffd87744da48c7208c 108 PRINTS PR00421 Thioredoxin family signature 32 41 6.1E-10 T 14-10-2018 YP_3177 d35a787a906916ffd87744da48c7208c 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 9.3E-39 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 YP_3177 d35a787a906916ffd87744da48c7208c 108 SUPERFAMILY SSF52833 2 107 1.03E-41 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_3177 d35a787a906916ffd87744da48c7208c 108 Gene3D G3DSA:3.40.30.10 1 108 6.1E-38 T 14-10-2018 YP_3177 d35a787a906916ffd87744da48c7208c 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 YP_3177 d35a787a906916ffd87744da48c7208c 108 PIRSF PIRSF000077 2 108 4.0E-44 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 YP_1670 4858718edf715bd66af9419967f24e52 280 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 10 222 1.4E-36 T 14-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 YP_1670 4858718edf715bd66af9419967f24e52 280 PIRSF PIRSF015582 1 280 2.0E-79 T 14-10-2018 IPR011206 Citrate lyase beta subunit-like YP_1670 4858718edf715bd66af9419967f24e52 280 Gene3D G3DSA:3.20.20.60 5 240 1.6E-89 T 14-10-2018 YP_1670 4858718edf715bd66af9419967f24e52 280 SUPERFAMILY SSF51621 7 233 3.04E-59 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YP_0194 78c928cd3cb510db18ec0f71625f6421 279 Gene3D G3DSA:1.10.287.460 39 152 8.7E-31 T 14-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 YP_0194 78c928cd3cb510db18ec0f71625f6421 279 Gene3D G3DSA:3.10.50.40 153 270 1.3E-42 T 14-10-2018 YP_0194 78c928cd3cb510db18ec0f71625f6421 279 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 170 256 4.1E-29 T 14-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YP_0194 78c928cd3cb510db18ec0f71625f6421 279 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 43 162 1.1E-37 T 14-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 YP_0194 78c928cd3cb510db18ec0f71625f6421 279 SUPERFAMILY SSF54534 53 259 2.55E-64 T 14-10-2018 YP_1921 2c23978e623e648918887d5d65a0a12d 228 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 6 227 1.9E-71 T 14-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 YP_1921 2c23978e623e648918887d5d65a0a12d 228 SUPERFAMILY SSF63848 122 227 5.36E-32 T 14-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 YP_1921 2c23978e623e648918887d5d65a0a12d 228 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 5 228 29.01 T 14-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 YP_1921 2c23978e623e648918887d5d65a0a12d 228 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 124 224 4.7E-31 T 14-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 YP_1921 2c23978e623e648918887d5d65a0a12d 228 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 1 102 3.3E-34 T 14-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 YP_1921 2c23978e623e648918887d5d65a0a12d 228 Gene3D G3DSA:3.30.750.120 1 113 2.1E-41 T 14-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily YP_1921 2c23978e623e648918887d5d65a0a12d 228 Gene3D G3DSA:2.160.20.70 119 228 2.1E-29 T 14-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 YP_0337 e63452ccd329647784792605ca107254 362 Pfam PF02733 Dak1 domain 47 354 4.9E-111 T 14-10-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 YP_0337 e63452ccd329647784792605ca107254 362 Gene3D G3DSA:3.30.1180.20 214 358 5.2E-48 T 14-10-2018 YP_0337 e63452ccd329647784792605ca107254 362 SUPERFAMILY SSF82549 40 358 7.85E-112 T 14-10-2018 YP_0337 e63452ccd329647784792605ca107254 362 Gene3D G3DSA:3.40.50.10440 41 213 6.8E-52 T 14-10-2018 YP_2457 5803bf748d357e5a12b7990a9404e594 374 Pfam PF00872 Transposase, Mutator family 2 349 4.6E-113 T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_2457 5803bf748d357e5a12b7990a9404e594 374 ProSitePatterns PS01007 Transposases, Mutator family, signature. 204 228 - T 14-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YP_pCD30 6b7119ea4ef425acf79fc4b0339a8781 419 Pfam PF16693 Inner membrane component of T3SS, periplasmic domain 160 413 1.9E-129 T 14-10-2018 IPR032034 Yop protein translocation protein D, periplasmic domain YP_pCD30 6b7119ea4ef425acf79fc4b0339a8781 419 Gene3D G3DSA:3.30.70.1770 285 348 8.9E-37 T 14-10-2018 YP_pCD30 6b7119ea4ef425acf79fc4b0339a8781 419 SUPERFAMILY SSF49879 4 93 1.82E-7 T 14-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 YP_pCD30 6b7119ea4ef425acf79fc4b0339a8781 419 Gene3D G3DSA:2.60.200.20 1 121 9.3E-25 T 14-10-2018 YP_pCD30 6b7119ea4ef425acf79fc4b0339a8781 419 TIGRFAM TIGR02500 type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family 3 413 7.6E-120 T 14-10-2018 IPR012843 Type III secretion system YscD/HrpQ YP_pCD30 6b7119ea4ef425acf79fc4b0339a8781 419 Pfam PF16697 Inner membrane component of T3SS, cytoplasmic domain 6 95 5.9E-21 T 14-10-2018 IPR032030 YscD, cytoplasmic domain YP_0903 1aa2deb4ada1f4c93c4b0c2ce86453c7 264 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 6.7E-28 T 14-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain YP_0903 1aa2deb4ada1f4c93c4b0c2ce86453c7 264 SUPERFAMILY SSF51658 1 254 2.21E-71 T 14-10-2018 IPR036237 Xylose isomerase-like superfamily YP_0903 1aa2deb4ada1f4c93c4b0c2ce86453c7 264 Gene3D G3DSA:3.20.20.150 1 261 8.4E-66 T 14-10-2018 YP_0903 1aa2deb4ada1f4c93c4b0c2ce86453c7 264 PIRSF PIRSF006241 1 261 1.7E-88 T 14-10-2018 IPR026040 Hydroxypyruvate isomerase-like YP_2271 87e1127539f44219973a6fe1d3830f5b 373 Pfam PF00581 Rhodanese-like domain 156 251 2.5E-15 T 14-10-2018 IPR001763 Rhodanese-like domain YP_2271 87e1127539f44219973a6fe1d3830f5b 373 Gene3D G3DSA:3.30.70.100 30 136 1.6E-14 T 14-10-2018 YP_2271 87e1127539f44219973a6fe1d3830f5b 373 Gene3D G3DSA:3.40.250.10 144 289 1.5E-43 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily YP_2271 87e1127539f44219973a6fe1d3830f5b 373 Pfam PF12368 Rhodanase C-terminal 264 326 6.6E-19 T 14-10-2018 IPR022111 Rhodanase, C-terminal YP_2271 87e1127539f44219973a6fe1d3830f5b 373 SMART SM00450 154 255 9.3E-27 T 14-10-2018 IPR001763 Rhodanese-like domain YP_2271 87e1127539f44219973a6fe1d3830f5b 373 Hamap MF_00469 UPF0176 protein YceA [yceA]. 40 295 38.612 T 14-10-2018 IPR020936 Uncharacterised protein family UPF0176 YP_2271 87e1127539f44219973a6fe1d3830f5b 373 SUPERFAMILY SSF52821 146 286 8.51E-31 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily YP_1360 b54278059162076c726900ada79c11b4 578 Pfam PF00691 OmpA family 447 543 6.5E-15 T 14-10-2018 IPR006665 OmpA-like domain YP_1360 b54278059162076c726900ada79c11b4 578 SUPERFAMILY SSF103088 427 548 2.22E-29 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_1360 b54278059162076c726900ada79c11b4 578 Gene3D G3DSA:3.30.1330.60 436 558 2.1E-28 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_2912 fb5f9494d25a687365526ff8fecfd0d8 499 SUPERFAMILY SSF56112 145 268 7.15E-16 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily YP_2912 fb5f9494d25a687365526ff8fecfd0d8 499 Gene3D G3DSA:1.10.510.10 125 350 9.0E-15 T 14-10-2018 YP_2912 fb5f9494d25a687365526ff8fecfd0d8 499 Pfam PF00069 Protein kinase domain 152 314 3.9E-10 T 14-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 YP_2912 fb5f9494d25a687365526ff8fecfd0d8 499 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 167 179 - T 14-10-2018 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 YP_3578 330d07b71ace618610dc8003c8d315b9 763 Gene3D G3DSA:3.40.50.300 442 614 2.5E-8 T 14-10-2018 YP_3578 330d07b71ace618610dc8003c8d315b9 763 SMART SM00778 29 67 1.6E-19 T 14-10-2018 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal GO:0003896|GO:0004386|GO:0008270 YP_3578 330d07b71ace618610dc8003c8d315b9 763 Gene3D G3DSA:1.10.10.10 652 750 7.2E-36 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3578 330d07b71ace618610dc8003c8d315b9 763 SUPERFAMILY SSF46785 652 750 1.96E-36 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3578 330d07b71ace618610dc8003c8d315b9 763 SUPERFAMILY SSF57783 28 94 5.1E-10 T 14-10-2018 YP_3578 330d07b71ace618610dc8003c8d315b9 763 Pfam PF08706 D5 N terminal like 373 447 2.8E-7 T 14-10-2018 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal YP_3578 330d07b71ace618610dc8003c8d315b9 763 SUPERFAMILY SSF52540 412 616 1.86E-11 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3578 330d07b71ace618610dc8003c8d315b9 763 SMART SM00885 318 444 1.3E-19 T 14-10-2018 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal YP_3578 330d07b71ace618610dc8003c8d315b9 763 Pfam PF08273 Zinc-binding domain of primase-helicase 30 67 1.6E-17 T 14-10-2018 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal GO:0003896|GO:0004386|GO:0008270 YP_3578 330d07b71ace618610dc8003c8d315b9 763 Pfam PF13362 Toprim domain 181 279 3.7E-11 T 14-10-2018 IPR006171 TOPRIM domain YP_3578 330d07b71ace618610dc8003c8d315b9 763 Pfam PF03288 Poxvirus D5 protein-like 651 748 8.3E-20 T 14-10-2018 IPR004968 DNA primase/nucleoside triphosphatase, C-terminal YP_1662 741c269dd43678d014ebd71ff90f569d 449 PIRSF PIRSF029766 1 449 1.4E-196 T 14-10-2018 IPR011228 Uncharacterised conserved protein UCP029766 YP_1662 741c269dd43678d014ebd71ff90f569d 449 SUPERFAMILY SSF49401 269 446 7.95E-8 T 14-10-2018 IPR008966 Adhesion domain superfamily YP_1662 741c269dd43678d014ebd71ff90f569d 449 Pfam PF00419 Fimbrial protein 263 449 2.5E-37 T 14-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YP_1597 f6a5bf67aeb5abf5013e7b5251f0b1d9 147 Gene3D G3DSA:1.20.58.300 4 121 1.5E-13 T 14-10-2018 YP_1597 f6a5bf67aeb5abf5013e7b5251f0b1d9 147 Pfam PF05130 FlgN protein 3 136 6.1E-27 T 14-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 YP_1597 f6a5bf67aeb5abf5013e7b5251f0b1d9 147 SUPERFAMILY SSF140566 3 121 1.2E-19 T 14-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 YP_2040 eec6914191ee3d27eb34323e67ac5001 385 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 40 380 5.2E-139 T 14-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 YP_2040 eec6914191ee3d27eb34323e67ac5001 385 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 35 381 28.148 T 14-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 YP_2040 eec6914191ee3d27eb34323e67ac5001 385 Pfam PF03116 NQR2, RnfD, RnfE family 37 379 3.6E-107 T 14-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 YP_2741 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 Gene3D G3DSA:3.40.50.300 205 379 1.2E-47 T 14-10-2018 YP_2741 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 Pfam PF01926 50S ribosome-binding GTPase 210 327 8.4E-24 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_2741 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 Pfam PF01926 50S ribosome-binding GTPase 5 119 5.3E-27 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_2741 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 PIRSF PIRSF006485 1 471 1.6E-177 T 14-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 YP_2741 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 3.9E-9 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_2741 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 3.9E-9 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 YP_2741 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 Hamap MF_00195 GTPase Der [der]. 2 466 38.65 T 14-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 YP_2741 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 Gene3D G3DSA:3.40.50.300 2 160 1.9E-42 T 14-10-2018 YP_2741 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 383 463 2.6E-25 T 14-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like YP_2741 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 463 4.4E-177 T 14-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 YP_2741 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 SUPERFAMILY SSF52540 207 469 2.7E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2741 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 SUPERFAMILY SSF52540 4 168 6.39E-45 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2741 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 153 3.4E-20 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YP_2741 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 207 372 5.2E-21 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YP_2741 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 Gene3D G3DSA:3.30.300.20 383 465 1.5E-19 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta YP_0339 10510bacc155a2995a824af5d06e3acc 319 Gene3D G3DSA:1.10.10.60 3 52 3.0E-20 T 14-10-2018 YP_0339 10510bacc155a2995a824af5d06e3acc 319 SUPERFAMILY SSF100950 63 313 1.34E-69 T 14-10-2018 IPR037171 NagB/RpiA transferase-like YP_0339 10510bacc155a2995a824af5d06e3acc 319 Pfam PF13518 Helix-turn-helix domain 13 49 2.9E-6 T 14-10-2018 YP_0339 10510bacc155a2995a824af5d06e3acc 319 Gene3D G3DSA:3.40.50.1360 53 318 9.4E-88 T 14-10-2018 YP_0339 10510bacc155a2995a824af5d06e3acc 319 Pfam PF04198 Putative sugar-binding domain 59 313 1.1E-80 T 14-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 YP_pMT116 00c40a8f9a4fdb73b3bc5e0a4e536221 206 SUPERFAMILY SSF53041 1 159 2.22E-30 T 14-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 YP_pMT116 00c40a8f9a4fdb73b3bc5e0a4e536221 206 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 14-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 YP_pMT116 00c40a8f9a4fdb73b3bc5e0a4e536221 206 ProSitePatterns PS00398 Site-specific recombinases signature 2. 62 74 - T 14-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 YP_pMT116 00c40a8f9a4fdb73b3bc5e0a4e536221 206 Gene3D G3DSA:3.40.50.1390 2 169 4.3E-30 T 14-10-2018 YP_pMT116 00c40a8f9a4fdb73b3bc5e0a4e536221 206 Pfam PF00239 Resolvase, N terminal domain 3 159 2.1E-28 T 14-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 YP_pMT116 00c40a8f9a4fdb73b3bc5e0a4e536221 206 SMART SM00857 3 159 8.3E-40 T 14-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 YP_pMT007 633adffabb0592305ff74cdf728466d6 1545 Pfam PF09327 Domain of unknown function (DUF1983) 1276 1354 1.5E-23 T 14-10-2018 IPR015406 Domain of unknown function DUF1983 YP_pMT007 633adffabb0592305ff74cdf728466d6 1545 Pfam PF12421 Fibronectin type III protein 1387 1515 5.3E-45 T 14-10-2018 IPR021034 Domain of unknown function, DUF3672 YP_pMT007 633adffabb0592305ff74cdf728466d6 1545 SUPERFAMILY SSF49265 665 824 1.33E-8 T 14-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 YP_pMT007 633adffabb0592305ff74cdf728466d6 1545 Pfam PF13550 Putative phage tail protein 360 522 3.1E-30 T 14-10-2018 IPR032876 Tip attachment protein J YP_pMT007 633adffabb0592305ff74cdf728466d6 1545 Gene3D G3DSA:2.60.40.10 744 840 8.6E-12 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_1113 565559992bb320543a67f2f490ad5769 87 Pfam PF04359 Protein of unknown function (DUF493) 7 87 7.1E-31 T 14-10-2018 IPR007454 Uncharacterised protein family UPF0250 YP_1113 565559992bb320543a67f2f490ad5769 87 SUPERFAMILY SSF117991 1 87 3.92E-32 T 14-10-2018 IPR027471 YbeD-like domain superfamily YP_1113 565559992bb320543a67f2f490ad5769 87 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 1 87 26.956 T 14-10-2018 IPR007454 Uncharacterised protein family UPF0250 YP_1113 565559992bb320543a67f2f490ad5769 87 Gene3D G3DSA:3.30.70.260 1 87 1.3E-35 T 14-10-2018 YP_1312 f19723bb7cd8c2a5dbd51e7f13d038ce 327 SUPERFAMILY SSF52540 6 167 8.21E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1312 f19723bb7cd8c2a5dbd51e7f13d038ce 327 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 170 6.9E-40 T 14-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain YP_1312 f19723bb7cd8c2a5dbd51e7f13d038ce 327 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 240 320 1.8E-5 T 14-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YP_1312 f19723bb7cd8c2a5dbd51e7f13d038ce 327 Gene3D G3DSA:3.40.50.300 2 194 1.5E-45 T 14-10-2018 YP_1312 f19723bb7cd8c2a5dbd51e7f13d038ce 327 SMART SM00833 239 322 0.0081 T 14-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YP_3879 0dc480732a47a4358e2da933e8dfe827 162 PIRSF PIRSF018472 2 162 1.1E-57 T 14-10-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type YP_3879 0dc480732a47a4358e2da933e8dfe827 162 Pfam PF04093 rod shape-determining protein MreD 7 154 1.2E-43 T 14-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 YP_3879 0dc480732a47a4358e2da933e8dfe827 162 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 9 154 7.5E-43 T 14-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 YP_3305 c1f98984ef93a80bd8e6e706da451fd2 565 Pfam PF06580 Histidine kinase 373 450 3.4E-25 T 14-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 YP_3305 c1f98984ef93a80bd8e6e706da451fd2 565 SUPERFAMILY SSF55874 426 558 5.2E-14 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3305 c1f98984ef93a80bd8e6e706da451fd2 565 SUPERFAMILY SSF55781 236 357 2.26E-5 T 14-10-2018 YP_3305 c1f98984ef93a80bd8e6e706da451fd2 565 Gene3D G3DSA:3.30.565.10 425 559 1.8E-13 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YP_3305 c1f98984ef93a80bd8e6e706da451fd2 565 Pfam PF07694 5TMR of 5TMR-LYT 30 198 1.4E-58 T 14-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 YP_0448 9ff2065f652337578ec23a3e533f8915 359 Pfam PF11202 Phosphoribosyl transferase (PRTase) 9 248 6.7E-90 T 14-10-2018 IPR011215 Phosphoribosyl transferase YP_0448 9ff2065f652337578ec23a3e533f8915 359 PIRSF PIRSF020979 1 359 6.6E-197 T 14-10-2018 IPR011215 Phosphoribosyl transferase YP_0448 9ff2065f652337578ec23a3e533f8915 359 Pfam PF15608 PELOTA RNA binding domain 276 357 7.1E-29 T 14-10-2018 IPR028157 PELOTA RNA-binding domain YP_pCD23 199e5bb2ae80be826cdf65f5d88c6909 216 ProDom PD023059 PLASMID TYPE PROTEINS YOP III YSCK VIRULENCE K TRANSLOCATION PSCK 13 214 6.0E-99 T 14-10-2018 IPR009510 Type III secretion system, secretion protein K GO:0009405 YP_pCD23 199e5bb2ae80be826cdf65f5d88c6909 216 Pfam PF06578 YOP proteins translocation protein K (YscK) 12 216 7.4E-93 T 14-10-2018 IPR009510 Type III secretion system, secretion protein K GO:0009405 YP_0866 3256ca64bb06b6c706e56de6736bfb27 210 SUPERFAMILY SSF69593 5 184 8.37E-35 T 14-10-2018 YP_0866 3256ca64bb06b6c706e56de6736bfb27 210 SMART SM00563 38 157 6.4E-27 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 YP_0866 3256ca64bb06b6c706e56de6736bfb27 210 Pfam PF01553 Acyltransferase 24 154 4.5E-23 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 YP_2510 85a549ccf3f5af4bae1fd26228deb64d 320 SUPERFAMILY SSF53474 87 229 1.39E-15 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_2510 85a549ccf3f5af4bae1fd26228deb64d 320 Gene3D G3DSA:3.40.50.1820 104 241 6.1E-7 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_2510 85a549ccf3f5af4bae1fd26228deb64d 320 Pfam PF11187 Protein of unknown function (DUF2974) 140 208 1.2E-4 T 14-10-2018 IPR024499 Protein of unknown function DUF2974 YP_1610 f6b8f7e3f684d9b5ec931837467d1138 206 Gene3D G3DSA:1.20.1260.10 31 205 8.2E-50 T 14-10-2018 IPR012347 Ferritin-like YP_1610 f6b8f7e3f684d9b5ec931837467d1138 206 SUPERFAMILY SSF47240 38 196 2.71E-57 T 14-10-2018 IPR009078 Ferritin-like superfamily YP_1610 f6b8f7e3f684d9b5ec931837467d1138 206 Pfam PF00210 Ferritin-like domain 45 180 4.5E-40 T 14-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 YP_0644 80832d8c5fe80fbfa6f86f99a27e29c2 364 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 345 1.3E-75 T 14-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 YP_0644 80832d8c5fe80fbfa6f86f99a27e29c2 364 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 348 1.0E-115 T 14-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 YP_0300 48b2ba6757e228c31baabf6b818de659 280 Gene3D G3DSA:3.40.50.1980 27 146 9.8E-38 T 14-10-2018 YP_0300 48b2ba6757e228c31baabf6b818de659 280 Gene3D G3DSA:3.40.50.1980 148 272 1.9E-31 T 14-10-2018 YP_0300 48b2ba6757e228c31baabf6b818de659 280 Pfam PF01497 Periplasmic binding protein 31 226 5.5E-27 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain YP_0300 48b2ba6757e228c31baabf6b818de659 280 SUPERFAMILY SSF53807 28 269 1.02E-55 T 14-10-2018 YP_0300 48b2ba6757e228c31baabf6b818de659 280 Hamap MF_01000 Vitamin B12-binding protein [btuF]. 8 273 52.773 T 14-10-2018 IPR023544 ABC transporter, vitamin B12-binding protein GO:0015889|GO:0031419|GO:0042597 YP_0293 e490fbe234332cbb1bad0e02693c5818 264 SUPERFAMILY SSF52540 13 237 3.41E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0293 e490fbe234332cbb1bad0e02693c5818 264 Pfam PF00005 ABC transporter 26 175 2.5E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0293 e490fbe234332cbb1bad0e02693c5818 264 SMART SM00382 35 223 3.9E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0293 e490fbe234332cbb1bad0e02693c5818 264 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0293 e490fbe234332cbb1bad0e02693c5818 264 Gene3D G3DSA:3.40.50.300 3 257 2.8E-69 T 14-10-2018 YP_2280 b9da334ba29f050a52cd7a0f19491b92 339 Gene3D G3DSA:3.20.20.100 1 326 3.9E-104 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_2280 b9da334ba29f050a52cd7a0f19491b92 339 SUPERFAMILY SSF51430 1 313 1.07E-92 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_2280 b9da334ba29f050a52cd7a0f19491b92 339 Pfam PF00248 Aldo/keto reductase family 15 309 2.4E-67 T 14-10-2018 IPR023210 NADP-dependent oxidoreductase domain YP_3921 c1d0abb0670049faf557e9e7af349ee0 265 SUPERFAMILY SSF161098 57 238 2.22E-36 T 14-10-2018 IPR035906 MetI-like superfamily YP_3921 c1d0abb0670049faf557e9e7af349ee0 265 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 248 1.5E-27 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_3921 c1d0abb0670049faf557e9e7af349ee0 265 Gene3D G3DSA:1.10.3720.10 56 248 2.1E-28 T 14-10-2018 IPR035906 MetI-like superfamily YP_0607 b6869f032553052ef6c96876079b5a87 168 Gene3D G3DSA:3.40.630.30 1 168 2.9E-48 T 14-10-2018 YP_0607 b6869f032553052ef6c96876079b5a87 168 Pfam PF00583 Acetyltransferase (GNAT) family 42 123 1.3E-7 T 14-10-2018 IPR000182 GNAT domain YP_0607 b6869f032553052ef6c96876079b5a87 168 SUPERFAMILY SSF55729 3 153 1.6E-21 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_3622 199f51d9b17450c382f8bf624eaebc4b 176 Pfam PF05258 Protein of unknown function (DUF721) 28 100 1.3E-13 T 14-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 YP_0004 e2c9e5e6d0e3b07fa611924d520dfb19 488 SUPERFAMILY SSF53300 323 465 1.26E-19 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YP_0004 e2c9e5e6d0e3b07fa611924d520dfb19 488 Gene3D G3DSA:3.40.50.410 326 468 9.0E-6 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YP_0004 e2c9e5e6d0e3b07fa611924d520dfb19 488 SMART SM00327 324 488 1.4E-5 T 14-10-2018 IPR002035 von Willebrand factor, type A YP_0004 e2c9e5e6d0e3b07fa611924d520dfb19 488 Pfam PF05762 VWA domain containing CoxE-like protein 310 441 1.5E-8 T 14-10-2018 IPR008912 Uncharacterised protein family CoxE-like YP_0004 e2c9e5e6d0e3b07fa611924d520dfb19 488 Hamap MF_01626 Protein ViaA [viaA]. 1 488 60.3 T 14-10-2018 IPR023481 Uncharacterised protein family ViaA YP_1593 a8ef7b2bfefe031ddf92f41c4d040948 134 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 87 131 3.9E-11 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_1593 a8ef7b2bfefe031ddf92f41c4d040948 134 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 14-10-2018 IPR019776 Flagellar basal body rod protein, conserved site YP_1593 a8ef7b2bfefe031ddf92f41c4d040948 134 Pfam PF00460 Flagella basal body rod protein 7 37 2.3E-10 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YP_1593 a8ef7b2bfefe031ddf92f41c4d040948 134 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 134 4.6E-52 T 14-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 YP_3442 460ed398943f5d3b8b7f73ce0450ceac 459 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 40 457 3.0E-112 T 14-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 YP_3442 460ed398943f5d3b8b7f73ce0450ceac 459 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 408 424 - T 14-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 YP_3442 460ed398943f5d3b8b7f73ce0450ceac 459 Pfam PF00939 Sodium:sulfate symporter transmembrane region 27 458 5.2E-54 T 14-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 YP_2077 4778df281d96376263859028a9d2db4e 846 Pfam PF10139 Putative bacterial virulence factor 28 471 8.4E-134 T 14-10-2018 IPR017030 Virulence effector, SrfC YP_2077 4778df281d96376263859028a9d2db4e 846 Pfam PF10139 Putative bacterial virulence factor 485 838 3.5E-68 T 14-10-2018 IPR017030 Virulence effector, SrfC YP_2077 4778df281d96376263859028a9d2db4e 846 PIRSF PIRSF034586 4 470 3.8E-208 T 14-10-2018 IPR017030 Virulence effector, SrfC YP_2077 4778df281d96376263859028a9d2db4e 846 PIRSF PIRSF034586 467 846 2.1E-145 T 14-10-2018 IPR017030 Virulence effector, SrfC YP_2416 a7a2a993065e46ee459ad42a9bc80ec8 163 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 72 1.5E-8 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 YP_2416 a7a2a993065e46ee459ad42a9bc80ec8 163 SMART SM00855 2 115 0.0046 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 YP_2416 a7a2a993065e46ee459ad42a9bc80ec8 163 SUPERFAMILY SSF53254 1 141 3.43E-19 T 14-10-2018 IPR029033 Histidine phosphatase superfamily YP_2416 a7a2a993065e46ee459ad42a9bc80ec8 163 Gene3D G3DSA:3.40.50.1240 1 161 1.2E-40 T 14-10-2018 IPR029033 Histidine phosphatase superfamily YP_2416 a7a2a993065e46ee459ad42a9bc80ec8 163 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 153 4.0E-49 T 14-10-2018 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0101006 YP_0985 942573e00cd55422dcad8a7f249dee78 157 ProDom PD097062 ZINC RESISTANCE-ASSOCIATED PERIPLASMIC PRECURSOR SIGNAL YJAI SEQUENCING DIRECT DFFA 24 134 5.0E-60 T 14-10-2018 IPR020365 Zinc resistance-associated protein, ZraP GO:0008270|GO:0042597 YP_0985 942573e00cd55422dcad8a7f249dee78 157 Gene3D G3DSA:1.20.120.1490 56 136 9.2E-30 T 14-10-2018 YP_0985 942573e00cd55422dcad8a7f249dee78 157 Pfam PF13801 Heavy-metal resistance 13 132 4.8E-15 T 14-10-2018 IPR025961 Heavy-metal resistance protein YP_1924 0134cb9976300f8c18b92e98ed16af79 361 Gene3D G3DSA:1.10.8.350 74 239 5.2E-87 T 14-10-2018 YP_1924 0134cb9976300f8c18b92e98ed16af79 361 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 63 360 1.8E-122 T 14-10-2018 IPR011970 Lytic murein transglycosylase YP_1924 0134cb9976300f8c18b92e98ed16af79 361 Pfam PF13406 Transglycosylase SLT domain 64 357 2.0E-105 T 14-10-2018 IPR031304 Transglycosylase SLT domain 2 YP_1924 0134cb9976300f8c18b92e98ed16af79 361 Gene3D G3DSA:1.10.530.10 106 356 5.2E-87 T 14-10-2018 YP_1924 0134cb9976300f8c18b92e98ed16af79 361 SUPERFAMILY SSF53955 53 359 3.52E-96 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_pCD79 cbe43112a97be154ef213381915b4241 99 Gene3D G3DSA:3.30.2310.20 1 93 6.5E-21 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily YP_pCD79 cbe43112a97be154ef213381915b4241 99 PIRSF PIRSF029218 1 96 1.7E-29 T 14-10-2018 IPR028344 Toxin-antitoxin system, toxin component ParE1/4 YP_pCD79 cbe43112a97be154ef213381915b4241 99 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 2 89 1.4E-15 T 14-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family YP_0036 ca6abf2bda65793d5d9556735b9307ce 404 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 2 397 24.717 T 14-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 YP_0036 ca6abf2bda65793d5d9556735b9307ce 404 Pfam PF03616 Sodium/glutamate symporter 2 366 2.6E-160 T 14-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 YP_0036 ca6abf2bda65793d5d9556735b9307ce 404 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 2 397 1.1E-190 T 14-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 YP_1727 d45297d108b4d58f893bc8c31257c89f 450 Pfam PF04403 Paraquat-inducible protein A 285 441 2.6E-46 T 14-10-2018 IPR007498 Intermembrane transport protein PqiA-like YP_1727 d45297d108b4d58f893bc8c31257c89f 450 Pfam PF04403 Paraquat-inducible protein A 88 239 3.7E-38 T 14-10-2018 IPR007498 Intermembrane transport protein PqiA-like YP_1727 d45297d108b4d58f893bc8c31257c89f 450 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 41 440 9.3E-172 T 14-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type YP_3093 c66b5c75977dce6a5f10b27c9f4630a6 233 Pfam PF07356 Protein of unknown function (DUF1481) 44 229 5.1E-76 T 14-10-2018 IPR010858 Protein of unknown function DUF1481 YP_3093 c66b5c75977dce6a5f10b27c9f4630a6 233 PIRSF PIRSF006993 1 233 3.2E-117 T 14-10-2018 IPR016500 Uncharacterised conserved protein UCP006993 YP_0296 f4eb650a6fe08a0672e7e2de54682b20 426 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 426 106.727 T 14-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 YP_0296 f4eb650a6fe08a0672e7e2de54682b20 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_0296 f4eb650a6fe08a0672e7e2de54682b20 426 SUPERFAMILY SSF53383 2 425 1.73E-137 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_0296 f4eb650a6fe08a0672e7e2de54682b20 426 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 3 425 1.7E-203 T 14-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 YP_0296 f4eb650a6fe08a0672e7e2de54682b20 426 Gene3D G3DSA:3.90.1150.10 7 419 1.1E-180 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_0296 f4eb650a6fe08a0672e7e2de54682b20 426 Pfam PF00202 Aminotransferase class-III 32 396 5.2E-79 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_0296 f4eb650a6fe08a0672e7e2de54682b20 426 Gene3D G3DSA:3.40.640.10 69 317 1.1E-180 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_3243 e9aa5e2d1f26feb73e76dc83b3ceb0bb 428 Pfam PF11862 Domain of unknown function (DUF3382) 5 103 1.2E-25 T 14-10-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal YP_3243 e9aa5e2d1f26feb73e76dc83b3ceb0bb 428 Pfam PF02653 Branched-chain amino acid transport system / permease component 113 398 3.6E-56 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_1213 25e2d16c9f5fbe407b96ed619f2049de 382 Hamap MF_01149 Uncharacterized MFS-type transporter YcaD [ycaD]. 1 382 35.882 T 14-10-2018 IPR023745 MSF-type transporter, YcaD YP_1213 25e2d16c9f5fbe407b96ed619f2049de 382 Pfam PF07690 Major Facilitator Superfamily 11 299 4.4E-21 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_1213 25e2d16c9f5fbe407b96ed619f2049de 382 SUPERFAMILY SSF103473 6 371 3.79E-43 T 14-10-2018 IPR036259 MFS transporter superfamily YP_1213 25e2d16c9f5fbe407b96ed619f2049de 382 Gene3D G3DSA:1.20.1250.20 3 187 5.1E-20 T 14-10-2018 YP_1213 25e2d16c9f5fbe407b96ed619f2049de 382 Gene3D G3DSA:1.20.1250.20 196 378 2.3E-17 T 14-10-2018 YP_2008 c5cdeb65a87c35762e57ec7e5dcaa097 299 Gene3D G3DSA:3.20.20.140 18 264 5.3E-82 T 14-10-2018 YP_2008 c5cdeb65a87c35762e57ec7e5dcaa097 299 SUPERFAMILY SSF89550 16 289 3.34E-52 T 14-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 YP_2008 c5cdeb65a87c35762e57ec7e5dcaa097 299 SMART SM00481 17 84 4.8E-20 T 14-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal YP_2008 c5cdeb65a87c35762e57ec7e5dcaa097 299 Gene3D G3DSA:1.10.150.650 112 183 5.3E-82 T 14-10-2018 YP_2008 c5cdeb65a87c35762e57ec7e5dcaa097 299 Pfam PF02811 PHP domain 18 115 2.5E-8 T 14-10-2018 IPR004013 PHP domain GO:0003824 YP_3226 0c547de965fbed097a761ed0d4b66c4e 247 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 37 230 3.8E-62 T 14-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 YP_3226 0c547de965fbed097a761ed0d4b66c4e 247 Pfam PF02592 Putative vitamin uptake transporter 68 224 2.0E-33 T 14-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 YP_3226 0c547de965fbed097a761ed0d4b66c4e 247 Hamap MF_02088 Probable queuosine precursor transporter. 32 238 15.282 T 14-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 YP_0089 8bf821008795b685ed755a8dab024242 255 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 248 61.046 T 14-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_0089 8bf821008795b685ed755a8dab024242 255 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 3.5E-95 T 14-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_0089 8bf821008795b685ed755a8dab024242 255 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 14-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_0089 8bf821008795b685ed755a8dab024242 255 SUPERFAMILY SSF51351 1 250 2.23E-90 T 14-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_0089 8bf821008795b685ed755a8dab024242 255 Gene3D G3DSA:3.20.20.70 1 255 5.6E-102 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_0089 8bf821008795b685ed755a8dab024242 255 Pfam PF00121 Triosephosphate isomerase 5 246 4.8E-92 T 14-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YP_3336 b6e8b24e532302231de03937f643c6cc 256 SUPERFAMILY SSF53335 9 249 1.2E-74 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3336 b6e8b24e532302231de03937f643c6cc 256 Gene3D G3DSA:3.40.50.150 60 253 1.9E-73 T 14-10-2018 YP_3336 b6e8b24e532302231de03937f643c6cc 256 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 6 251 38.124 T 14-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 YP_3336 b6e8b24e532302231de03937f643c6cc 256 Pfam PF04445 Putative SAM-dependent methyltransferase 22 249 1.1E-107 T 14-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 YP_3336 b6e8b24e532302231de03937f643c6cc 256 Gene3D G3DSA:3.40.1630.10 4 59 1.2E-28 T 14-10-2018 YP_0626 5ef8824fffa2f3eb2b3eef26d5417244 209 Pfam PF05845 Bacterial phosphonate metabolism protein (PhnH) 7 207 1.1E-65 T 14-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 YP_0626 5ef8824fffa2f3eb2b3eef26d5417244 209 Gene3D G3DSA:3.40.50.11310 2 209 9.7E-62 T 14-10-2018 IPR038058 PhnH-like superfamily YP_0626 5ef8824fffa2f3eb2b3eef26d5417244 209 SUPERFAMILY SSF159709 14 208 1.09E-54 T 14-10-2018 IPR038058 PhnH-like superfamily YP_0626 5ef8824fffa2f3eb2b3eef26d5417244 209 PIRSF PIRSF020680 1 209 3.2E-51 T 14-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 YP_0626 5ef8824fffa2f3eb2b3eef26d5417244 209 TIGRFAM TIGR03292 PhnH_redo: phosphonate C-P lyase system protein PhnH 8 205 2.0E-48 T 14-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 YP_3452 a8b5bea0eba78fef093abfeed8d4ecd9 277 Pfam PF00775 Dioxygenase 71 167 5.1E-8 T 14-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 YP_3452 a8b5bea0eba78fef093abfeed8d4ecd9 277 SUPERFAMILY SSF49482 41 261 1.18E-44 T 14-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 YP_3452 a8b5bea0eba78fef093abfeed8d4ecd9 277 Gene3D G3DSA:2.60.130.10 6 224 9.6E-43 T 14-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 YP_1401 040fa337528b8e652c609859aca0e6ca 565 PRINTS PR00072 Malic enzyme signature 242 260 9.8E-72 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 YP_1401 040fa337528b8e652c609859aca0e6ca 565 PRINTS PR00072 Malic enzyme signature 87 111 9.8E-72 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 YP_1401 040fa337528b8e652c609859aca0e6ca 565 PRINTS PR00072 Malic enzyme signature 408 424 9.8E-72 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 YP_1401 040fa337528b8e652c609859aca0e6ca 565 PRINTS PR00072 Malic enzyme signature 147 176 9.8E-72 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 YP_1401 040fa337528b8e652c609859aca0e6ca 565 PRINTS PR00072 Malic enzyme signature 183 205 9.8E-72 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 YP_1401 040fa337528b8e652c609859aca0e6ca 565 PRINTS PR00072 Malic enzyme signature 267 283 9.8E-72 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 YP_1401 040fa337528b8e652c609859aca0e6ca 565 PRINTS PR00072 Malic enzyme signature 298 314 9.8E-72 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 YP_1401 040fa337528b8e652c609859aca0e6ca 565 Pfam PF00390 Malic enzyme, N-terminal domain 81 261 2.2E-79 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 YP_1401 040fa337528b8e652c609859aca0e6ca 565 SUPERFAMILY SSF51735 271 562 5.63E-94 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1401 040fa337528b8e652c609859aca0e6ca 565 Pfam PF03949 Malic enzyme, NAD binding domain 271 530 4.1E-101 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 YP_1401 040fa337528b8e652c609859aca0e6ca 565 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 4 565 71.084 T 14-10-2018 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38|MetaCyc: PWY-6339 YP_1401 040fa337528b8e652c609859aca0e6ca 565 Gene3D G3DSA:3.40.50.10380 18 268 2.2E-115 T 14-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 YP_1401 040fa337528b8e652c609859aca0e6ca 565 PIRSF PIRSF000106 3 563 4.5E-228 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 YP_1401 040fa337528b8e652c609859aca0e6ca 565 ProSitePatterns PS00331 Malic enzymes signature. 267 283 - T 14-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 YP_1401 040fa337528b8e652c609859aca0e6ca 565 SMART SM01274 81 261 9.4E-110 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 YP_1401 040fa337528b8e652c609859aca0e6ca 565 SUPERFAMILY SSF53223 6 270 4.89E-111 T 14-10-2018 YP_1401 040fa337528b8e652c609859aca0e6ca 565 Gene3D G3DSA:3.40.50.720 269 565 4.0E-108 T 14-10-2018 YP_1401 040fa337528b8e652c609859aca0e6ca 565 SMART SM00919 271 531 5.4E-133 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 YP_2988 6b490230598c4367a32ae1c3cfcef3b8 243 SMART SM00563 67 182 1.8E-39 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 YP_2988 6b490230598c4367a32ae1c3cfcef3b8 243 Pfam PF01553 Acyltransferase 62 180 3.4E-32 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 YP_2988 6b490230598c4367a32ae1c3cfcef3b8 243 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 50 180 5.7E-48 T 14-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 YP_2988 6b490230598c4367a32ae1c3cfcef3b8 243 SUPERFAMILY SSF69593 2 237 4.45E-64 T 14-10-2018 YP_1377 0492a4205c5d19cdb069fe146037b1ad 193 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 29 174 1.0E-24 T 14-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN YP_1377 0492a4205c5d19cdb069fe146037b1ad 193 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 32 184 1.8E-39 T 14-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN YP_1377 0492a4205c5d19cdb069fe146037b1ad 193 Gene3D G3DSA:2.60.40.4150 58 193 4.0E-48 T 14-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily YP_2564 2b129365217a3a463907e3fcce90b59a 111 Gene3D G3DSA:3.10.20.30 1 111 4.8E-37 T 14-10-2018 IPR012675 Beta-grasp domain superfamily YP_2564 2b129365217a3a463907e3fcce90b59a 111 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 111 9.2E-62 T 14-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 YP_2564 2b129365217a3a463907e3fcce90b59a 111 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 15 92 3.6E-15 T 14-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 YP_2564 2b129365217a3a463907e3fcce90b59a 111 SUPERFAMILY SSF54292 4 109 7.27E-35 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YP_2564 2b129365217a3a463907e3fcce90b59a 111 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 14-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 YP_2564 2b129365217a3a463907e3fcce90b59a 111 PRINTS PR00355 Adrenodoxin signature 42 52 5.4E-10 T 14-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 YP_2564 2b129365217a3a463907e3fcce90b59a 111 PRINTS PR00355 Adrenodoxin signature 60 74 5.4E-10 T 14-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 YP_2564 2b129365217a3a463907e3fcce90b59a 111 PRINTS PR00355 Adrenodoxin signature 83 91 5.4E-10 T 14-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 YP_2358 b65d7d1ca69076ddb0364b64161c8d8d 181 Gene3D G3DSA:1.20.120.1200 1 159 1.2E-47 T 14-10-2018 YP_2358 b65d7d1ca69076ddb0364b64161c8d8d 181 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 16 157 4.5E-33 T 14-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_3050 c85b1e09ddf56f48cfb30bd77bf27a8d 126 Pfam PF02561 Flagellar protein FliS 11 123 2.7E-28 T 14-10-2018 IPR003713 Flagellar protein FliS GO:0044780 YP_3050 c85b1e09ddf56f48cfb30bd77bf27a8d 126 Gene3D G3DSA:1.20.120.340 1 126 9.7E-30 T 14-10-2018 YP_3050 c85b1e09ddf56f48cfb30bd77bf27a8d 126 PIRSF PIRSF039090 1 126 1.4E-32 T 14-10-2018 IPR003713 Flagellar protein FliS GO:0044780 YP_3050 c85b1e09ddf56f48cfb30bd77bf27a8d 126 TIGRFAM TIGR00208 fliS: flagellar protein FliS 10 122 1.0E-20 T 14-10-2018 IPR003713 Flagellar protein FliS GO:0044780 YP_3050 c85b1e09ddf56f48cfb30bd77bf27a8d 126 SUPERFAMILY SSF101116 20 124 4.84E-30 T 14-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 YP_1562 e07f6d614cf96bbd00cedf6153f268b2 570 Pfam PF01514 Secretory protein of YscJ/FliF family 34 223 1.3E-73 T 14-10-2018 IPR006182 Secretory protein YscJ/FliF YP_1562 e07f6d614cf96bbd00cedf6153f268b2 570 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 18 569 2.2E-171 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YP_1562 e07f6d614cf96bbd00cedf6153f268b2 570 Pfam PF08345 Flagellar M-ring protein C-terminal 255 447 1.2E-49 T 14-10-2018 IPR013556 Flagellar M-ring C-terminal YP_1562 e07f6d614cf96bbd00cedf6153f268b2 570 Gene3D G3DSA:3.30.300.30 125 226 1.8E-9 T 14-10-2018 YP_1562 e07f6d614cf96bbd00cedf6153f268b2 570 PIRSF PIRSF004862 8 570 1.3E-162 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YP_1562 e07f6d614cf96bbd00cedf6153f268b2 570 PRINTS PR01009 Flagellar M-ring protein signature 156 170 6.3E-43 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YP_1562 e07f6d614cf96bbd00cedf6153f268b2 570 PRINTS PR01009 Flagellar M-ring protein signature 124 142 6.3E-43 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YP_1562 e07f6d614cf96bbd00cedf6153f268b2 570 PRINTS PR01009 Flagellar M-ring protein signature 199 217 6.3E-43 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YP_1562 e07f6d614cf96bbd00cedf6153f268b2 570 PRINTS PR01009 Flagellar M-ring protein signature 268 286 6.3E-43 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YP_1562 e07f6d614cf96bbd00cedf6153f268b2 570 PRINTS PR01009 Flagellar M-ring protein signature 375 399 6.3E-43 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YP_2749 6c1b9289d1b1e904b3796bec0a56e532 142 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 14-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YP_2749 6c1b9289d1b1e904b3796bec0a56e532 142 SMART SM00562 3 140 6.0E-85 T 14-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YP_2749 6c1b9289d1b1e904b3796bec0a56e532 142 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 35.115 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YP_2749 6c1b9289d1b1e904b3796bec0a56e532 142 Gene3D G3DSA:3.30.70.141 1 141 3.1E-58 T 14-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YP_2749 6c1b9289d1b1e904b3796bec0a56e532 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 3.1E-39 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YP_2749 6c1b9289d1b1e904b3796bec0a56e532 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 3.1E-39 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YP_2749 6c1b9289d1b1e904b3796bec0a56e532 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 3.1E-39 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YP_2749 6c1b9289d1b1e904b3796bec0a56e532 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 3.1E-39 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YP_2749 6c1b9289d1b1e904b3796bec0a56e532 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 3.1E-39 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YP_2749 6c1b9289d1b1e904b3796bec0a56e532 142 SUPERFAMILY SSF54919 1 140 2.1E-58 T 14-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YP_2749 6c1b9289d1b1e904b3796bec0a56e532 142 Pfam PF00334 Nucleoside diphosphate kinase 4 138 5.7E-56 T 14-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YP_0240 01b5a1b1b3cddddbbd146d33a14ec30a 170 PIRSF PIRSF004749 1 169 5.0E-55 T 14-10-2018 IPR023635 Peptide deformylase YP_0240 01b5a1b1b3cddddbbd146d33a14ec30a 170 Hamap MF_00163 Peptide deformylase [def]. 2 162 31.435 T 14-10-2018 IPR023635 Peptide deformylase YP_0240 01b5a1b1b3cddddbbd146d33a14ec30a 170 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 160 1.2E-64 T 14-10-2018 IPR023635 Peptide deformylase YP_0240 01b5a1b1b3cddddbbd146d33a14ec30a 170 Gene3D G3DSA:3.90.45.10 2 169 9.2E-67 T 14-10-2018 IPR036821 Peptide deformylase superfamily YP_0240 01b5a1b1b3cddddbbd146d33a14ec30a 170 PRINTS PR01576 Peptide deformylase signature 120 149 1.9E-38 T 14-10-2018 IPR023635 Peptide deformylase YP_0240 01b5a1b1b3cddddbbd146d33a14ec30a 170 PRINTS PR01576 Peptide deformylase signature 101 119 1.9E-38 T 14-10-2018 IPR023635 Peptide deformylase YP_0240 01b5a1b1b3cddddbbd146d33a14ec30a 170 PRINTS PR01576 Peptide deformylase signature 33 62 1.9E-38 T 14-10-2018 IPR023635 Peptide deformylase YP_0240 01b5a1b1b3cddddbbd146d33a14ec30a 170 PRINTS PR01576 Peptide deformylase signature 89 100 1.9E-38 T 14-10-2018 IPR023635 Peptide deformylase YP_0240 01b5a1b1b3cddddbbd146d33a14ec30a 170 Pfam PF01327 Polypeptide deformylase 4 152 1.3E-49 T 14-10-2018 IPR023635 Peptide deformylase YP_0240 01b5a1b1b3cddddbbd146d33a14ec30a 170 SUPERFAMILY SSF56420 3 165 9.16E-62 T 14-10-2018 IPR036821 Peptide deformylase superfamily YP_0840 4a71d9f513d09238ebd59cd46707c02e 149 SUPERFAMILY SSF141322 90 147 2.88E-5 T 14-10-2018 YP_0840 4a71d9f513d09238ebd59cd46707c02e 149 Pfam PF01957 NfeD-like C-terminal, partner-binding 13 146 4.5E-24 T 14-10-2018 IPR002810 NfeD-like, C-terminal domain YP_0840 4a71d9f513d09238ebd59cd46707c02e 149 Gene3D G3DSA:2.40.50.140 82 149 4.3E-10 T 14-10-2018 YP_3894 39ae6354467292df798027963d99539f 39 SUPERFAMILY SSF101125 1 34 2.75E-13 T 14-10-2018 IPR036471 Colicin D superfamily YP_3894 39ae6354467292df798027963d99539f 39 Gene3D G3DSA:1.20.120.650 1 34 3.4E-7 T 14-10-2018 IPR036471 Colicin D superfamily YP_3894 39ae6354467292df798027963d99539f 39 Pfam PF09204 Bacterial self-protective colicin-like immunity 1 32 9.9E-9 T 14-10-2018 IPR015287 Colicin D immunity protein domain GO:0015643|GO:0030153 YP_pCD03 dbe47838e691ebdadca0dcd0c3f92a43 132 Pfam PF13276 HTH-like domain 25 75 8.2E-7 T 14-10-2018 IPR025948 HTH-like domain YP_0188 019da2398b0e4993a0b975d22641d5df 183 Pfam PF02525 Flavodoxin-like fold 7 174 4.5E-40 T 14-10-2018 IPR003680 Flavodoxin-like fold YP_0188 019da2398b0e4993a0b975d22641d5df 183 Hamap MF_01415 Glutathione-regulated potassium-efflux system ancillary protein KefG [kefG]. 2 183 49.544 T 14-10-2018 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG GO:0006813 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 YP_0188 019da2398b0e4993a0b975d22641d5df 183 SUPERFAMILY SSF52218 6 177 3.96E-47 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_0188 019da2398b0e4993a0b975d22641d5df 183 Gene3D G3DSA:3.40.50.360 7 179 6.7E-51 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_2081 036b47275796147511be6ae9130d2852 224 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 3 220 1.2E-74 T 14-10-2018 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 YP_2081 036b47275796147511be6ae9130d2852 224 Gene3D G3DSA:1.10.150.240 16 95 2.1E-61 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YP_2081 036b47275796147511be6ae9130d2852 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 194 7.4E-20 T 14-10-2018 YP_2081 036b47275796147511be6ae9130d2852 224 SUPERFAMILY SSF56784 2 222 3.01E-47 T 14-10-2018 IPR036412 HAD-like superfamily YP_2081 036b47275796147511be6ae9130d2852 224 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 97 189 2.5E-14 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_2081 036b47275796147511be6ae9130d2852 224 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 54 195 1.3E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_2081 036b47275796147511be6ae9130d2852 224 Gene3D G3DSA:3.40.50.1000 5 218 2.1E-61 T 14-10-2018 IPR023214 HAD superfamily YP_2081 036b47275796147511be6ae9130d2852 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 8.2E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_2081 036b47275796147511be6ae9130d2852 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 8.2E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_2081 036b47275796147511be6ae9130d2852 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 8.2E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_2081 036b47275796147511be6ae9130d2852 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 184 197 8.2E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_1595 36ec25a2a8153d7e39ac233e4afc77c0 254 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 120 252 7.9E-44 T 14-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YP_1595 36ec25a2a8153d7e39ac233e4afc77c0 254 Gene3D G3DSA:2.30.30.760 195 254 9.7E-26 T 14-10-2018 YP_1595 36ec25a2a8153d7e39ac233e4afc77c0 254 Pfam PF13144 Chaperone for flagella basal body P-ring formation 60 252 3.8E-54 T 14-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YP_1595 36ec25a2a8153d7e39ac233e4afc77c0 254 SMART SM00858 130 192 1.4E-14 T 14-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 YP_3614 99b3ce3c507e661ba2747a7e70e1cd9c 280 Pfam PF04402 Protein of unknown function (DUF541) 57 258 3.8E-43 T 14-10-2018 IPR007497 Protein of unknown function DUF541 YP_3614 99b3ce3c507e661ba2747a7e70e1cd9c 280 Gene3D G3DSA:3.30.70.2970 67 174 1.4E-49 T 14-10-2018 YP_3614 99b3ce3c507e661ba2747a7e70e1cd9c 280 Gene3D G3DSA:3.30.110.170 58 259 1.4E-49 T 14-10-2018 YP_2869 86772d879e2489a080c8090410a5f053 228 TIGRFAM TIGR02248 mutH_TIGR: DNA mismatch repair endonuclease MutH 11 226 6.0E-106 T 14-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 YP_2869 86772d879e2489a080c8090410a5f053 228 Gene3D G3DSA:3.40.600.10 6 228 3.7E-50 T 14-10-2018 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily GO:0003677|GO:0004519 YP_2869 86772d879e2489a080c8090410a5f053 228 SMART SM00927 59 157 3.6E-66 T 14-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 YP_2869 86772d879e2489a080c8090410a5f053 228 Hamap MF_00759 DNA mismatch repair protein MutH [mutH]. 1 228 152.64 T 14-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 YP_2869 86772d879e2489a080c8090410a5f053 228 SUPERFAMILY SSF52980 9 227 2.09E-80 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 YP_2869 86772d879e2489a080c8090410a5f053 228 Pfam PF02976 DNA mismatch repair enzyme MutH 59 157 1.8E-33 T 14-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 YP_1658 17bc2d20221c90e9fa42f2527ed84b5b 467 Gene3D G3DSA:1.20.1250.20 51 454 4.2E-16 T 14-10-2018 YP_1658 17bc2d20221c90e9fa42f2527ed84b5b 467 SUPERFAMILY SSF103473 46 455 9.81E-27 T 14-10-2018 IPR036259 MFS transporter superfamily YP_1658 17bc2d20221c90e9fa42f2527ed84b5b 467 Pfam PF07690 Major Facilitator Superfamily 66 397 2.9E-9 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_2565 3f1acae0c03d6c2c75336c06528ff002 66 PIRSF PIRSF039003 3 66 1.2E-32 T 14-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 YP_2565 3f1acae0c03d6c2c75336c06528ff002 66 Gene3D G3DSA:1.10.10.600 1 66 2.9E-31 T 14-10-2018 IPR036762 IscX-like superfamily YP_2565 3f1acae0c03d6c2c75336c06528ff002 66 SUPERFAMILY SSF140319 3 64 4.84E-27 T 14-10-2018 IPR036762 IscX-like superfamily YP_2565 3f1acae0c03d6c2c75336c06528ff002 66 Pfam PF04384 Iron-sulphur cluster assembly 3 66 1.6E-32 T 14-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 YP_2565 3f1acae0c03d6c2c75336c06528ff002 66 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 66 1.0E-33 T 14-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 YP_1878 effb0304a693a39126dee1df96b7e26f 276 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 18 218 7.4E-24 T 14-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 YP_1878 effb0304a693a39126dee1df96b7e26f 276 SUPERFAMILY SSF51695 15 266 9.94E-50 T 14-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YP_1878 effb0304a693a39126dee1df96b7e26f 276 Gene3D G3DSA:3.20.20.190 8 245 3.5E-46 T 14-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YP_2577 6d6554771077ba8e397b4e26d1cd41bc 343 Pfam PF00419 Fimbrial protein 201 342 4.4E-16 T 14-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YP_2577 6d6554771077ba8e397b4e26d1cd41bc 343 Gene3D G3DSA:2.60.40.1090 206 341 7.6E-11 T 14-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YP_2577 6d6554771077ba8e397b4e26d1cd41bc 343 SUPERFAMILY SSF49401 207 340 6.15E-18 T 14-10-2018 IPR008966 Adhesion domain superfamily YP_0557 8d880e024717e71d7e87096244d110b2 443 Gene3D G3DSA:3.30.465.10 347 428 1.9E-29 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YP_0557 8d880e024717e71d7e87096244d110b2 443 SMART SM01091 346 426 1.2E-27 T 14-10-2018 IPR005170 Transporter-associated domain YP_0557 8d880e024717e71d7e87096244d110b2 443 Pfam PF00571 CBS domain 287 333 0.003 T 14-10-2018 IPR000644 CBS domain YP_0557 8d880e024717e71d7e87096244d110b2 443 SMART SM00116 285 333 10.0 T 14-10-2018 IPR000644 CBS domain YP_0557 8d880e024717e71d7e87096244d110b2 443 SMART SM00116 221 270 2.1 T 14-10-2018 IPR000644 CBS domain YP_0557 8d880e024717e71d7e87096244d110b2 443 Gene3D G3DSA:3.10.580.10 193 346 5.1E-33 T 14-10-2018 YP_0557 8d880e024717e71d7e87096244d110b2 443 Pfam PF03471 Transporter associated domain 347 425 1.6E-20 T 14-10-2018 IPR005170 Transporter-associated domain YP_0557 8d880e024717e71d7e87096244d110b2 443 Pfam PF01595 Domain of unknown function DUF21 6 197 3.8E-38 T 14-10-2018 IPR002550 CNNM, transmembrane domain YP_0557 8d880e024717e71d7e87096244d110b2 443 SUPERFAMILY SSF56176 344 429 2.13E-22 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YP_0557 8d880e024717e71d7e87096244d110b2 443 SUPERFAMILY SSF54631 200 335 5.97E-21 T 14-10-2018 YP_2495 4898fe311c64abcb2ae3c8a1faf0d280 562 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 2 558 35.22 T 14-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 YP_2495 4898fe311c64abcb2ae3c8a1faf0d280 562 Pfam PF03814 Potassium-transporting ATPase A subunit 12 556 2.7E-241 T 14-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 YP_2495 4898fe311c64abcb2ae3c8a1faf0d280 562 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 1 557 1.3E-260 T 14-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 YP_2495 4898fe311c64abcb2ae3c8a1faf0d280 562 PIRSF PIRSF001294 1 560 9.2E-239 T 14-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 YP_2816 3a058a8a7576d4542c8b65993bc223e1 183 Pfam PF07348 Syd protein (SUKH-2) 7 179 1.8E-72 T 14-10-2018 IPR009948 Syd GO:0009898 YP_2816 3a058a8a7576d4542c8b65993bc223e1 183 Gene3D G3DSA:3.40.1580.20 1 181 4.8E-68 T 14-10-2018 IPR038228 Syd superfamily YP_2816 3a058a8a7576d4542c8b65993bc223e1 183 Hamap MF_01104 Protein Syd [syd]. 3 181 37.264 T 14-10-2018 IPR009948 Syd GO:0009898 YP_0242 9bb7240408d73d92bc0faf2260f9e03a 157 Pfam PF04361 Protein of unknown function (DUF494) 1 157 1.8E-60 T 14-10-2018 IPR007456 Smg YP_0242 9bb7240408d73d92bc0faf2260f9e03a 157 Hamap MF_00598 Protein Smg [smg]. 1 157 31.289 T 14-10-2018 IPR007456 Smg YP_2200 6b419c8d1454ae70331c8721e3d35cfd 338 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 4 327 1.9E-124 T 14-10-2018 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 KEGG: 00785+6.3.1.20|Reactome: R-HSA-389661 YP_2200 6b419c8d1454ae70331c8721e3d35cfd 338 SUPERFAMILY SSF82649 248 336 7.32E-23 T 14-10-2018 YP_2200 6b419c8d1454ae70331c8721e3d35cfd 338 Pfam PF03099 Biotin/lipoate A/B protein ligase family 52 158 3.4E-8 T 14-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 YP_2200 6b419c8d1454ae70331c8721e3d35cfd 338 Gene3D G3DSA:3.30.390.50 250 338 1.2E-27 T 14-10-2018 YP_2200 6b419c8d1454ae70331c8721e3d35cfd 338 Hamap MF_01602 Lipoate-protein ligase A [lplA]. 1 338 57.052 T 14-10-2018 IPR023741 Lipoate-protein ligase A GO:0009249|GO:0016979 KEGG: 00785+6.3.1.20 YP_2200 6b419c8d1454ae70331c8721e3d35cfd 338 SUPERFAMILY SSF55681 4 247 2.15E-78 T 14-10-2018 YP_2200 6b419c8d1454ae70331c8721e3d35cfd 338 Gene3D G3DSA:3.30.930.10 2 249 3.6E-87 T 14-10-2018 YP_2200 6b419c8d1454ae70331c8721e3d35cfd 338 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 250 333 3.8E-18 T 14-10-2018 IPR019491 Lipoate protein ligase, C-terminal KEGG: 00785+6.3.1.20 YP_3223 32f4246b94d4081943f8fb49d3269d8f 430 Hamap MF_00753 Anaerobic glycerol-3-phosphate dehydrogenase subunit B [glpB]. 7 426 52.115 T 14-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 YP_3223 32f4246b94d4081943f8fb49d3269d8f 430 SUPERFAMILY SSF51905 4 424 2.13E-25 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3223 32f4246b94d4081943f8fb49d3269d8f 430 TIGRFAM TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit 9 423 3.7E-182 T 14-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 YP_3223 32f4246b94d4081943f8fb49d3269d8f 430 Pfam PF00890 FAD binding domain 10 410 7.7E-63 T 14-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 YP_3223 32f4246b94d4081943f8fb49d3269d8f 430 Gene3D G3DSA:3.50.50.60 2 119 5.2E-7 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_3223 32f4246b94d4081943f8fb49d3269d8f 430 PIRSF PIRSF000141 7 429 6.0E-176 T 14-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 YP_1628 a943112d4445c58251fc9f2e05286690 132 SUPERFAMILY SSF55331 3 125 2.32E-42 T 14-10-2018 IPR014347 Tautomerase/MIF superfamily YP_1628 a943112d4445c58251fc9f2e05286690 132 Gene3D G3DSA:3.30.429.10 3 126 7.1E-46 T 14-10-2018 IPR014347 Tautomerase/MIF superfamily YP_1628 a943112d4445c58251fc9f2e05286690 132 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 3 123 6.2E-22 T 14-10-2018 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 YP_1479 16c5da5e3c10372364fe6b9a2364957f 98 Pfam PF10964 Protein of unknown function (DUF2766) 20 97 2.3E-47 T 14-10-2018 IPR020262 Uncharacterised protein family YecJ YP_1479 16c5da5e3c10372364fe6b9a2364957f 98 ProDom PD060536 YECJ YPO1738 20 98 8.0E-40 T 14-10-2018 IPR020262 Uncharacterised protein family YecJ YP_2404 8ab41a95b98cc1faffa085ca160887d7 176 Gene3D G3DSA:2.60.40.1090 30 175 3.1E-35 T 14-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YP_2404 8ab41a95b98cc1faffa085ca160887d7 176 SUPERFAMILY SSF49401 30 176 2.04E-36 T 14-10-2018 IPR008966 Adhesion domain superfamily YP_2404 8ab41a95b98cc1faffa085ca160887d7 176 Pfam PF00419 Fimbrial protein 32 175 5.9E-16 T 14-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YP_0770 7ef18a52b535cf7f3e86202b86e540c1 194 Pfam PF03923 Uncharacterized lipoprotein 31 190 4.8E-54 T 14-10-2018 IPR005619 Uncharacterised protein family, YajG YP_0770 7ef18a52b535cf7f3e86202b86e540c1 194 Pfam PF08139 Prokaryotic membrane lipoprotein lipid attachment site 1 21 1.4E-6 T 14-10-2018 IPR012640 Membrane lipoprotein, lipid attachment site YP_2146 3dbc9365b6e59ed26ac7fe7c4c818bff 296 Gene3D G3DSA:1.10.3720.10 85 293 3.4E-17 T 14-10-2018 IPR035906 MetI-like superfamily YP_2146 3dbc9365b6e59ed26ac7fe7c4c818bff 296 SUPERFAMILY SSF161098 90 277 6.28E-21 T 14-10-2018 IPR035906 MetI-like superfamily YP_2146 3dbc9365b6e59ed26ac7fe7c4c818bff 296 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 14 66 1.0E-6 T 14-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YP_2146 3dbc9365b6e59ed26ac7fe7c4c818bff 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 295 8.6E-21 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_0162 55bf78bcff0c084ef19b3d5c5a098337 108 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 3 107 6.1E-37 T 14-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 YP_0162 55bf78bcff0c084ef19b3d5c5a098337 108 SUPERFAMILY SSF50022 1 107 2.14E-37 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 YP_0162 55bf78bcff0c084ef19b3d5c5a098337 108 Pfam PF13806 Rieske-like [2Fe-2S] domain 3 107 5.7E-41 T 14-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 YP_0162 55bf78bcff0c084ef19b3d5c5a098337 108 Gene3D G3DSA:2.102.10.10 1 108 1.9E-33 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 YP_1291 9991e3c8c8b813deba1212e854329697 214 SUPERFAMILY SSF46894 6 92 5.39E-14 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_1291 9991e3c8c8b813deba1212e854329697 214 SMART SM00862 18 92 1.5E-8 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_1291 9991e3c8c8b813deba1212e854329697 214 Pfam PF00486 Transcriptional regulatory protein, C terminal 20 91 6.7E-14 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YP_1291 9991e3c8c8b813deba1212e854329697 214 Gene3D G3DSA:1.10.10.10 3 93 2.8E-15 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3829 d880a82fb032e010a0422f32487d98c3 260 Pfam PF02405 Permease MlaE 45 256 5.2E-76 T 14-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 YP_3829 d880a82fb032e010a0422f32487d98c3 260 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 5 258 2.2E-104 T 14-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria YP_1239 792c3598f3d41b5f13c651d334d9ee1e 351 Pfam PF01212 Beta-eliminating lyase 16 296 1.1E-95 T 14-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 YP_1239 792c3598f3d41b5f13c651d334d9ee1e 351 Gene3D G3DSA:3.40.640.10 10 257 3.2E-98 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_1239 792c3598f3d41b5f13c651d334d9ee1e 351 PIRSF PIRSF017617 7 351 6.9E-131 T 14-10-2018 IPR023603 Threonine aldolase YP_1239 792c3598f3d41b5f13c651d334d9ee1e 351 Gene3D G3DSA:3.90.1150.10 258 348 4.5E-28 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_1239 792c3598f3d41b5f13c651d334d9ee1e 351 SUPERFAMILY SSF53383 15 347 8.43E-113 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_2288 d19e185da0a918e3c90858422c288cf8 415 Pfam PF00924 Mechanosensitive ion channel 144 399 2.7E-55 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 YP_2288 d19e185da0a918e3c90858422c288cf8 415 SUPERFAMILY SSF50182 188 253 2.84E-12 T 14-10-2018 IPR010920 LSM domain superfamily YP_2288 d19e185da0a918e3c90858422c288cf8 415 Gene3D G3DSA:2.30.30.60 202 245 2.7E-5 T 14-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily YP_0179 9140e549e62624487f2355e5307ffc62 326 ProSitePatterns PS01133 Uncharacterized protein family UPF0017 signature. 226 267 - T 14-10-2018 IPR000952 AB hydrolase 4, conserved site YP_0179 9140e549e62624487f2355e5307ffc62 326 Pfam PF00561 alpha/beta hydrolase fold 60 298 1.5E-20 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YP_0179 9140e549e62624487f2355e5307ffc62 326 SUPERFAMILY SSF53474 28 302 1.88E-39 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_0179 9140e549e62624487f2355e5307ffc62 326 PIRSF PIRSF005211 1 326 3.3E-104 T 14-10-2018 IPR012020 AB hydrolase 4 family YP_1735 42e7fcdfec21a5762e593eb3b3232ff0 389 Pfam PF00419 Fimbrial protein 251 389 5.9E-13 T 14-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YP_1735 42e7fcdfec21a5762e593eb3b3232ff0 389 Gene3D G3DSA:2.60.40.1090 252 389 8.1E-25 T 14-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YP_1735 42e7fcdfec21a5762e593eb3b3232ff0 389 SUPERFAMILY SSF49401 253 388 1.29E-21 T 14-10-2018 IPR008966 Adhesion domain superfamily YP_1292 2c30d70cb151d8a499974d4caab4368b 566 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 113 196 2.3E-39 T 14-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 YP_1292 2c30d70cb151d8a499974d4caab4368b 566 Pfam PF02378 Phosphotransferase system, EIIC 237 500 2.9E-16 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 YP_1292 2c30d70cb151d8a499974d4caab4368b 566 SUPERFAMILY SSF52794 111 211 1.92E-34 T 14-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 YP_1292 2c30d70cb151d8a499974d4caab4368b 566 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 221 556 1.0E-142 T 14-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 YP_1292 2c30d70cb151d8a499974d4caab4368b 566 SUPERFAMILY SSF52794 4 88 7.85E-11 T 14-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 YP_1292 2c30d70cb151d8a499974d4caab4368b 566 Gene3D G3DSA:3.40.50.2300 101 212 4.2E-38 T 14-10-2018 YP_1292 2c30d70cb151d8a499974d4caab4368b 566 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 114 195 3.2E-18 T 14-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 YP_3191 226136f33cfd7c7aa108b1d04b0b693a 463 Gene3D G3DSA:1.20.1740.10 11 461 2.9E-52 T 14-10-2018 YP_3191 226136f33cfd7c7aa108b1d04b0b693a 463 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 14-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 YP_3191 226136f33cfd7c7aa108b1d04b0b693a 463 Pfam PF00324 Amino acid permease 18 430 5.0E-101 T 14-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 YP_3191 226136f33cfd7c7aa108b1d04b0b693a 463 PIRSF PIRSF006060 1 461 4.1E-60 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_3357 05d74d1cf2321ac67797ce71a57c0527 572 PIRSF PIRSF001432 1 565 2.6E-279 T 14-10-2018 IPR010702 Periplasmic pectate lyase GO:0016837|GO:0042597|GO:0045490 YP_3357 05d74d1cf2321ac67797ce71a57c0527 572 Gene3D G3DSA:2.30.30.880 69 562 0.0 T 14-10-2018 YP_3357 05d74d1cf2321ac67797ce71a57c0527 572 Pfam PF06917 Periplasmic pectate lyase 18 572 0.0 T 14-10-2018 IPR010702 Periplasmic pectate lyase GO:0016837|GO:0042597|GO:0045490 YP_3357 05d74d1cf2321ac67797ce71a57c0527 572 Gene3D G3DSA:1.50.10.20 27 527 0.0 T 14-10-2018 YP_3357 05d74d1cf2321ac67797ce71a57c0527 572 Gene3D G3DSA:2.20.25.430 281 397 0.0 T 14-10-2018 YP_2899 b448191fd872ab0524be4f6871b55338 477 Gene3D G3DSA:3.20.20.140 15 473 9.7E-200 T 14-10-2018 YP_2899 b448191fd872ab0524be4f6871b55338 477 Pfam PF02614 Glucuronate isomerase 9 473 1.3E-226 T 14-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 YP_2899 b448191fd872ab0524be4f6871b55338 477 SUPERFAMILY SSF51556 11 473 5.1E-179 T 14-10-2018 IPR032466 Metal-dependent hydrolase YP_2899 b448191fd872ab0524be4f6871b55338 477 Gene3D G3DSA:1.10.2020.10 54 145 9.7E-200 T 14-10-2018 YP_2899 b448191fd872ab0524be4f6871b55338 477 Hamap MF_00675 Uronate isomerase [uxaC]. 10 475 48.974 T 14-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 YP_2484 4aac94c35a23ce4b9571e4cd6fa08497 253 SUPERFAMILY SSF88713 1 252 2.89E-77 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 YP_2484 4aac94c35a23ce4b9571e4cd6fa08497 253 Gene3D G3DSA:3.20.20.370 1 253 7.0E-69 T 14-10-2018 YP_2484 4aac94c35a23ce4b9571e4cd6fa08497 253 Hamap MF_01246 Chitooligosaccharide deacetylase [chbG]. 3 250 41.618 T 14-10-2018 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria GO:0000272|GO:0016811 YP_2484 4aac94c35a23ce4b9571e4cd6fa08497 253 Pfam PF04794 YdjC-like protein 5 241 1.3E-62 T 14-10-2018 IPR006879 Carbohydrate deacetylase YdjC-like YP_pCRY03 caf1140b9799cebfedb27cebd37db3f5 118 Gene3D G3DSA:1.10.260.40 1 109 1.4E-17 T 14-10-2018 YP_pCRY03 caf1140b9799cebfedb27cebd37db3f5 118 SUPERFAMILY SSF47413 2 69 8.85E-13 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_pCRY03 caf1140b9799cebfedb27cebd37db3f5 118 Pfam PF12844 Helix-turn-helix domain 4 65 1.6E-11 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_pCRY03 caf1140b9799cebfedb27cebd37db3f5 118 SMART SM00530 5 64 5.3E-11 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_2188 e619165d83a7a63429af46117a99bc58 441 SUPERFAMILY SSF101960 48 436 1.06E-112 T 14-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily YP_2188 e619165d83a7a63429af46117a99bc58 441 Pfam PF01458 Uncharacterized protein family (UPF0051) 188 411 4.0E-74 T 14-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 YP_2188 e619165d83a7a63429af46117a99bc58 441 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 150 427 4.4E-88 T 14-10-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 YP_2206 7e0a8fe2246f804e353edc4e7cacd849 301 Pfam PF01522 Polysaccharide deacetylase 17 170 2.5E-13 T 14-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 YP_2206 7e0a8fe2246f804e353edc4e7cacd849 301 SUPERFAMILY SSF88713 15 267 4.45E-28 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 YP_2206 7e0a8fe2246f804e353edc4e7cacd849 301 Hamap MF_01870 Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD [arnD]. 1 296 64.602 T 14-10-2018 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable GO:0016811 YP_2566 70436c150c72d158fe5696a0e0c50484 432 PRINTS PR00481 Cytosol aminopeptidase signature 191 208 6.6E-47 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YP_2566 70436c150c72d158fe5696a0e0c50484 432 PRINTS PR00481 Cytosol aminopeptidase signature 213 234 6.6E-47 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YP_2566 70436c150c72d158fe5696a0e0c50484 432 PRINTS PR00481 Cytosol aminopeptidase signature 250 271 6.6E-47 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YP_2566 70436c150c72d158fe5696a0e0c50484 432 PRINTS PR00481 Cytosol aminopeptidase signature 300 315 6.6E-47 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YP_2566 70436c150c72d158fe5696a0e0c50484 432 PRINTS PR00481 Cytosol aminopeptidase signature 272 292 6.6E-47 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YP_2566 70436c150c72d158fe5696a0e0c50484 432 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 276 283 - T 14-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 YP_2566 70436c150c72d158fe5696a0e0c50484 432 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 110 422 5.2E-105 T 14-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 YP_2566 70436c150c72d158fe5696a0e0c50484 432 SUPERFAMILY SSF53187 108 427 1.07E-102 T 14-10-2018 YP_2566 70436c150c72d158fe5696a0e0c50484 432 Pfam PF12404 Peptidase 6 82 1.2E-35 T 14-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 YP_2566 70436c150c72d158fe5696a0e0c50484 432 Gene3D G3DSA:3.40.630.10 95 431 1.4E-106 T 14-10-2018 YP_2566 70436c150c72d158fe5696a0e0c50484 432 PIRSF PIRSF036388 2 432 1.7E-239 T 14-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 YP_2566 70436c150c72d158fe5696a0e0c50484 432 Hamap MF_00504 Peptidase B [pepB]. 4 428 70.354 T 14-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 YP_2099 7a66e5cbb92164c6b823995949f13dc2 874 Gene3D G3DSA:3.90.1760.10 717 839 1.5E-21 T 14-10-2018 IPR037017 Anthrax toxin, edema factor, central domain superfamily GO:0005576|GO:0008294|GO:0009405 KEGG: 00230+4.6.1.1 YP_2099 7a66e5cbb92164c6b823995949f13dc2 874 Gene3D G3DSA:2.180.10.10 1 690 1.4E-270 T 14-10-2018 YP_2099 7a66e5cbb92164c6b823995949f13dc2 874 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 610 690 2.1E-26 T 14-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 YP_2099 7a66e5cbb92164c6b823995949f13dc2 874 Pfam PF03497 Anthrax toxin LF subunit 697 799 4.0E-19 T 14-10-2018 IPR005165 Anthrax toxin, edema factor, central GO:0005576|GO:0008294|GO:0009405 KEGG: 00230+4.6.1.1 YP_2099 7a66e5cbb92164c6b823995949f13dc2 874 SUPERFAMILY SSF81298 674 864 3.66E-71 T 14-10-2018 IPR035099 Anthrax toxin, edema factor, C-terminal KEGG: 00230+4.6.1.1 YP_0864 74953bd31c43734babcc5e7184132fb5 200 Gene3D G3DSA:1.20.120.1760 7 199 1.0E-22 T 14-10-2018 YP_0864 74953bd31c43734babcc5e7184132fb5 200 Pfam PF01066 CDP-alcohol phosphatidyltransferase 27 94 6.0E-10 T 14-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 YP_pMT076 a451e7cc9d5822aa153e4dae09ce29fc 411 Pfam PF07728 AAA domain (dynein-related subfamily) 173 293 2.1E-15 T 14-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 YP_pMT076 a451e7cc9d5822aa153e4dae09ce29fc 411 Gene3D G3DSA:3.40.50.300 151 331 2.8E-19 T 14-10-2018 YP_pMT076 a451e7cc9d5822aa153e4dae09ce29fc 411 SUPERFAMILY SSF52540 128 331 4.97E-21 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2078 3cb01049de7cc8dbe17fcc286b4552ac 264 Pfam PF07313 Protein of unknown function (DUF1460) 59 256 2.8E-78 T 14-10-2018 IPR010846 Protein of unknown function DUF1460 YP_2078 3cb01049de7cc8dbe17fcc286b4552ac 264 Gene3D G3DSA:2.30.260.10 173 264 2.6E-21 T 14-10-2018 YP_2078 3cb01049de7cc8dbe17fcc286b4552ac 264 Gene3D G3DSA:1.10.3670.10 49 172 8.0E-24 T 14-10-2018 YP_2078 3cb01049de7cc8dbe17fcc286b4552ac 264 SUPERFAMILY SSF54001 33 264 4.02E-81 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily YP_1278 5571cf7d467157fc9c635af78a4e3f1c 224 Gene3D G3DSA:1.20.1050.10 103 219 1.2E-38 T 14-10-2018 YP_1278 5571cf7d467157fc9c635af78a4e3f1c 224 SUPERFAMILY SSF52833 9 101 1.81E-25 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_1278 5571cf7d467157fc9c635af78a4e3f1c 224 Pfam PF13417 Glutathione S-transferase, N-terminal domain 27 98 1.1E-14 T 14-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 YP_1278 5571cf7d467157fc9c635af78a4e3f1c 224 Gene3D G3DSA:3.40.30.10 19 101 8.7E-35 T 14-10-2018 YP_1278 5571cf7d467157fc9c635af78a4e3f1c 224 SUPERFAMILY SSF47616 90 220 2.92E-22 T 14-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YP_2136 fd4b56c20e01b131d17ba2cd333e240f 80 TIGRFAM TIGR02979 phageshock_pspD: phage shock protein PspD 10 70 4.7E-34 T 14-10-2018 IPR014321 Phage shock protein, PspD YP_2136 fd4b56c20e01b131d17ba2cd333e240f 80 Pfam PF09584 Phage shock protein PspD (Phageshock_PspD) 10 70 1.2E-20 T 14-10-2018 IPR014321 Phage shock protein, PspD YP_3028 1d05af53b9457a1792bc6a83412dca2f 247 Pfam PF02108 Flagellar assembly protein FliH 109 232 6.5E-30 T 14-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YP_3028 1d05af53b9457a1792bc6a83412dca2f 247 Pfam PF09811 Essential protein Yae1, N terminal 58 95 1.9E-9 T 14-10-2018 IPR019191 Essential protein Yae1, N-terminal YP_1463 edc67ee8259021f7cedd82a1b8fb1d83 170 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 1 170 3.6E-54 T 14-10-2018 IPR018636 Protein of unknown function DUF2058 YP_1855 ec0902e84cfa5c5524fe1a57147290c7 150 Gene3D G3DSA:3.40.250.10 20 137 3.4E-25 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily YP_1855 ec0902e84cfa5c5524fe1a57147290c7 150 Pfam PF00581 Rhodanese-like domain 44 130 1.7E-11 T 14-10-2018 IPR001763 Rhodanese-like domain YP_1855 ec0902e84cfa5c5524fe1a57147290c7 150 SMART SM00450 37 134 2.3E-11 T 14-10-2018 IPR001763 Rhodanese-like domain YP_1855 ec0902e84cfa5c5524fe1a57147290c7 150 SUPERFAMILY SSF52821 34 137 1.83E-22 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily YP_1771 3f8964263b2e649684ca24ba26264a49 434 SUPERFAMILY SSF53659 21 434 1.92E-148 T 14-10-2018 YP_1771 3f8964263b2e649684ca24ba26264a49 434 SMART SM01329 46 430 1.3E-180 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 YP_1771 3f8964263b2e649684ca24ba26264a49 434 Gene3D G3DSA:3.40.718.10 11 434 1.5E-186 T 14-10-2018 YP_1771 3f8964263b2e649684ca24ba26264a49 434 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 18 434 2.2E-234 T 14-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 YP_1771 3f8964263b2e649684ca24ba26264a49 434 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 47 430 1.6E-116 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 YP_1771 3f8964263b2e649684ca24ba26264a49 434 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 321 340 - T 14-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 YP_2408 48a37491c23bab2e8360f4fe82e7dabb 93 Pfam PF08891 YfcL protein 5 87 3.1E-36 T 14-10-2018 IPR014987 Uncharacterised protein family YfcL YP_1028 372147d5400d43f31fb791ab162779f8 241 Pfam PF04973 Nicotinamide mononucleotide transporter 23 227 4.9E-53 T 14-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 YP_1028 372147d5400d43f31fb791ab162779f8 241 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 22 229 4.6E-63 T 14-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 YP_1193 fde537e3711c34f9bb5bc0357722fa5e 250 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 241 1.6E-123 T 14-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 YP_1193 fde537e3711c34f9bb5bc0357722fa5e 250 Gene3D G3DSA:3.90.550.10 1 250 1.3E-100 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_1193 fde537e3711c34f9bb5bc0357722fa5e 250 SUPERFAMILY SSF53448 3 247 4.51E-67 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_1193 fde537e3711c34f9bb5bc0357722fa5e 250 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 248 45.648 T 14-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 YP_1193 fde537e3711c34f9bb5bc0357722fa5e 250 Pfam PF02348 Cytidylyltransferase 4 221 4.6E-68 T 14-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 YP_2822 1c3afa085b9c4af09502a412da9e8580 305 Gene3D G3DSA:1.10.10.10 7 94 1.7E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2822 1c3afa085b9c4af09502a412da9e8580 305 SUPERFAMILY SSF53850 93 296 2.33E-40 T 14-10-2018 YP_2822 1c3afa085b9c4af09502a412da9e8580 305 Pfam PF03466 LysR substrate binding domain 91 292 1.1E-39 T 14-10-2018 IPR005119 LysR, substrate-binding YP_2822 1c3afa085b9c4af09502a412da9e8580 305 SUPERFAMILY SSF46785 3 87 3.59E-24 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_2822 1c3afa085b9c4af09502a412da9e8580 305 Gene3D G3DSA:3.40.190.10 163 262 3.4E-60 T 14-10-2018 YP_2822 1c3afa085b9c4af09502a412da9e8580 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 3.0E-21 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2822 1c3afa085b9c4af09502a412da9e8580 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 4.6E-10 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2822 1c3afa085b9c4af09502a412da9e8580 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 4.6E-10 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2822 1c3afa085b9c4af09502a412da9e8580 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 4.6E-10 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2822 1c3afa085b9c4af09502a412da9e8580 305 Gene3D G3DSA:3.40.190.10 103 288 3.4E-60 T 14-10-2018 YP_0669 36424f6db06f7d1ac36c3a409eb96767 399 Gene3D G3DSA:1.20.1250.20 10 386 3.3E-47 T 14-10-2018 YP_0669 36424f6db06f7d1ac36c3a409eb96767 399 Pfam PF07690 Major Facilitator Superfamily 19 274 6.1E-29 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_0669 36424f6db06f7d1ac36c3a409eb96767 399 SUPERFAMILY SSF103473 9 390 3.4E-56 T 14-10-2018 IPR036259 MFS transporter superfamily YP_pPCP06 ff97ab111935ea83635c4ff31b4c5e5c 357 Pfam PF16754 Bacterial toxin homologue of phage lysozyme, C-term 167 323 6.4E-55 T 14-10-2018 IPR031922 Bacterial toxin homologue of phage lysozyme, C-terminal YP_pPCP06 ff97ab111935ea83635c4ff31b4c5e5c 357 SUPERFAMILY SSF53955 194 349 6.14E-8 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_pPCP06 ff97ab111935ea83635c4ff31b4c5e5c 357 Gene3D G3DSA:1.10.530.40 165 357 7.3E-69 T 14-10-2018 YP_3089 428ebe5eb0b0a81c8f9d92bf0f1f8cc6 309 PIRSF PIRSF000450 1 308 1.8E-146 T 14-10-2018 IPR033752 MetA family YP_3089 428ebe5eb0b0a81c8f9d92bf0f1f8cc6 309 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 2.0E-149 T 14-10-2018 YP_3089 428ebe5eb0b0a81c8f9d92bf0f1f8cc6 309 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 31 299 40.936 T 14-10-2018 IPR033752 MetA family YP_3089 428ebe5eb0b0a81c8f9d92bf0f1f8cc6 309 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 302 5.4E-157 T 14-10-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 YP_3089 428ebe5eb0b0a81c8f9d92bf0f1f8cc6 309 Gene3D G3DSA:3.40.50.880 1 301 4.9E-120 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_3089 428ebe5eb0b0a81c8f9d92bf0f1f8cc6 309 SUPERFAMILY SSF52317 17 297 3.82E-100 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like YP_3089 428ebe5eb0b0a81c8f9d92bf0f1f8cc6 309 Pfam PF04204 Homoserine O-succinyltransferase 2 299 9.1E-132 T 14-10-2018 IPR033752 MetA family YP_3151 c4b98d901d0e264b88f4115c30857cc8 514 SUPERFAMILY SSF55021 420 512 1.03E-25 T 14-10-2018 YP_3151 c4b98d901d0e264b88f4115c30857cc8 514 SUPERFAMILY SSF53686 14 365 6.81E-101 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YP_3151 c4b98d901d0e264b88f4115c30857cc8 514 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 53 66 - T 14-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 YP_3151 c4b98d901d0e264b88f4115c30857cc8 514 Gene3D G3DSA:3.40.50.1100 61 157 4.3E-130 T 14-10-2018 YP_3151 c4b98d901d0e264b88f4115c30857cc8 514 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 329 419 3.0E-28 T 14-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 YP_3151 c4b98d901d0e264b88f4115c30857cc8 514 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 425 512 6.9E-26 T 14-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 YP_3151 c4b98d901d0e264b88f4115c30857cc8 514 SUPERFAMILY SSF55021 336 423 9.16E-28 T 14-10-2018 YP_3151 c4b98d901d0e264b88f4115c30857cc8 514 Gene3D G3DSA:3.40.50.1100 25 327 4.3E-130 T 14-10-2018 YP_3151 c4b98d901d0e264b88f4115c30857cc8 514 Gene3D G3DSA:3.40.1020.10 338 514 7.4E-72 T 14-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 YP_3151 c4b98d901d0e264b88f4115c30857cc8 514 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 29 316 1.7E-76 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YP_3151 c4b98d901d0e264b88f4115c30857cc8 514 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 15 512 6.1E-261 T 14-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 YP_0289 222ee5f093ccf469e802b60495136daa 291 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 48 281 56.151 T 14-10-2018 IPR005224 Sugar fermentation stimulation protein YP_0289 222ee5f093ccf469e802b60495136daa 291 Gene3D G3DSA:3.40.1350.60 128 281 4.7E-56 T 14-10-2018 YP_0289 222ee5f093ccf469e802b60495136daa 291 Gene3D G3DSA:2.40.50.580 48 127 1.2E-27 T 14-10-2018 YP_0289 222ee5f093ccf469e802b60495136daa 291 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 51 279 1.2E-80 T 14-10-2018 IPR005224 Sugar fermentation stimulation protein YP_0289 222ee5f093ccf469e802b60495136daa 291 Pfam PF03749 Sugar fermentation stimulation protein 61 273 2.7E-74 T 14-10-2018 IPR005224 Sugar fermentation stimulation protein YP_0317 fe8c191fbaadbc2e4dc5a9d07c072e70 170 Gene3D G3DSA:1.10.1220.10 135 169 6.0E-6 T 14-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 YP_0317 fe8c191fbaadbc2e4dc5a9d07c072e70 170 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 38 164 2.8E-28 T 14-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system YP_0317 fe8c191fbaadbc2e4dc5a9d07c072e70 170 Gene3D G3DSA:3.30.160.250 36 121 1.9E-20 T 14-10-2018 YP_0317 fe8c191fbaadbc2e4dc5a9d07c072e70 170 SUPERFAMILY SSF143100 32 96 1.57E-14 T 14-10-2018 IPR035069 TTHA1013/TTHA0281-like YP_pMT115 043fef5e4161bce7b300cacc55e32467 108 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 5 96 4.1E-7 T 14-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family YP_pMT115 043fef5e4161bce7b300cacc55e32467 108 Gene3D G3DSA:3.30.2310.20 3 101 2.3E-6 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily YP_pMT115 043fef5e4161bce7b300cacc55e32467 108 SUPERFAMILY SSF143011 35 95 3.53E-5 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily YP_1997 7ebbf9a1e865175791d1bcd23feff099 256 Hamap MF_01067 UPF0259 membrane protein YciC [yciC]. 1 249 22.426 T 14-10-2018 IPR009627 Uncharacterised protein family UPF0259 YP_1997 7ebbf9a1e865175791d1bcd23feff099 256 Pfam PF06790 Uncharacterised protein family (UPF0259) 1 247 1.6E-101 T 14-10-2018 IPR009627 Uncharacterised protein family UPF0259 YP_3312 c34ac3067e1732a9ea91fe1baf7c9786 194 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 2 188 5.2E-31 T 14-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 YP_3312 c34ac3067e1732a9ea91fe1baf7c9786 194 Pfam PF01914 MarC family integral membrane protein 2 190 1.3E-57 T 14-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 YP_2073 236442a7827bd84d1542a61c27bffccf 272 Gene3D G3DSA:3.40.50.300 6 234 4.0E-63 T 14-10-2018 YP_2073 236442a7827bd84d1542a61c27bffccf 272 Pfam PF00005 ABC transporter 35 174 6.7E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2073 236442a7827bd84d1542a61c27bffccf 272 SMART SM00382 44 223 1.0E-18 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_2073 236442a7827bd84d1542a61c27bffccf 272 SUPERFAMILY SSF52540 16 248 5.74E-71 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2073 236442a7827bd84d1542a61c27bffccf 272 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0800 04e9e7613edab25d7d9c910cc3e46883 218 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 5.9E-18 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YP_0800 04e9e7613edab25d7d9c910cc3e46883 218 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 14-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YP_0800 04e9e7613edab25d7d9c910cc3e46883 218 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 84 202 1.2E-54 T 14-10-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 YP_0800 04e9e7613edab25d7d9c910cc3e46883 218 SUPERFAMILY SSF46689 2 78 1.75E-19 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0800 04e9e7613edab25d7d9c910cc3e46883 218 SUPERFAMILY SSF48498 85 203 5.34E-13 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YP_0800 04e9e7613edab25d7d9c910cc3e46883 218 Gene3D G3DSA:1.10.357.10 1 215 3.9E-79 T 14-10-2018 YP_0800 04e9e7613edab25d7d9c910cc3e46883 218 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 7.4E-10 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YP_0800 04e9e7613edab25d7d9c910cc3e46883 218 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 7.4E-10 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YP_2646 214506977241ed50572c8e0563b6f3e2 233 Pfam PF04131 Putative N-acetylmannosamine-6-phosphate epimerase 33 224 1.4E-81 T 14-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 YP_2646 214506977241ed50572c8e0563b6f3e2 233 Gene3D G3DSA:3.20.20.70 2 227 2.3E-86 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_2646 214506977241ed50572c8e0563b6f3e2 233 SUPERFAMILY SSF51366 11 222 1.98E-53 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 YP_2646 214506977241ed50572c8e0563b6f3e2 233 Hamap MF_01235 Putative N-acetylmannosamine-6-phosphate 2-epimerase [nanE]. 9 223 38.38 T 14-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 YP_2631 a66eb23e7358bc5513f7ac4760aa72af 509 Pfam PF00092 von Willebrand factor type A domain 134 303 1.1E-22 T 14-10-2018 IPR002035 von Willebrand factor, type A YP_2631 a66eb23e7358bc5513f7ac4760aa72af 509 SUPERFAMILY SSF53300 130 306 4.17E-35 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YP_2631 a66eb23e7358bc5513f7ac4760aa72af 509 SMART SM00327 132 311 7.5E-26 T 14-10-2018 IPR002035 von Willebrand factor, type A YP_2631 a66eb23e7358bc5513f7ac4760aa72af 509 Gene3D G3DSA:3.40.50.410 135 311 2.8E-34 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YP_2390 1d355be4be2a40e2b457e80112121c84 351 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 99 344 4.8E-91 T 14-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 YP_2390 1d355be4be2a40e2b457e80112121c84 351 SUPERFAMILY SSF53850 117 348 5.43E-63 T 14-10-2018 YP_2390 1d355be4be2a40e2b457e80112121c84 351 Gene3D G3DSA:3.40.190.10 204 304 6.9E-85 T 14-10-2018 YP_2390 1d355be4be2a40e2b457e80112121c84 351 SMART SM00062 118 347 1.6E-71 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_2390 1d355be4be2a40e2b457e80112121c84 351 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 119 345 2.5E-61 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_2390 1d355be4be2a40e2b457e80112121c84 351 Gene3D G3DSA:3.40.190.10 120 343 6.9E-85 T 14-10-2018 YP_2390 1d355be4be2a40e2b457e80112121c84 351 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 141 154 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site YP_3240 00633f620d8f0b220199e19ca4196fd9 145 Gene3D G3DSA:3.40.630.30 16 145 2.3E-38 T 14-10-2018 YP_3240 00633f620d8f0b220199e19ca4196fd9 145 SUPERFAMILY SSF55729 26 138 2.19E-11 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_3240 00633f620d8f0b220199e19ca4196fd9 145 Hamap MF_02018 PanD regulatory factor [panZ]. 16 145 34.824 T 14-10-2018 IPR032900 PanD regulatory factor PanZ GO:0015940|GO:0031638 YP_3240 00633f620d8f0b220199e19ca4196fd9 145 Pfam PF12568 Acetyltransferase (GNAT) domain 17 144 9.4E-56 T 14-10-2018 IPR000182 GNAT domain YP_1944 ddb92ec11a2b20cf5a2d825fa1741dbb 192 SUPERFAMILY SSF158442 31 177 9.42E-47 T 14-10-2018 IPR023380 DsbB-like superfamily YP_1944 ddb92ec11a2b20cf5a2d825fa1741dbb 192 Pfam PF02600 Disulfide bond formation protein DsbB 28 175 2.2E-46 T 14-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 YP_1944 ddb92ec11a2b20cf5a2d825fa1741dbb 192 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 23 183 22.731 T 14-10-2018 IPR022920 Disulphide bond formation protein DsbB YP_1944 ddb92ec11a2b20cf5a2d825fa1741dbb 192 Gene3D G3DSA:1.20.1550.10 17 192 6.3E-70 T 14-10-2018 IPR023380 DsbB-like superfamily YP_1850 b9a5f5ae58738a6ac8059dcee5cedffa 235 SUPERFAMILY SSF52218 50 231 3.48E-20 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_1850 b9a5f5ae58738a6ac8059dcee5cedffa 235 Pfam PF12682 Flavodoxin 85 219 2.9E-24 T 14-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 YP_1850 b9a5f5ae58738a6ac8059dcee5cedffa 235 Gene3D G3DSA:3.40.50.360 42 232 1.2E-51 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_0525 4bd9c786e7b6cecb4f51ce9c569acf13 156 SUPERFAMILY SSF52540 29 148 1.9E-22 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0525 4bd9c786e7b6cecb4f51ce9c569acf13 156 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 131 3.3E-41 T 14-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 YP_0525 4bd9c786e7b6cecb4f51ce9c569acf13 156 Gene3D G3DSA:3.40.50.300 1 153 2.7E-47 T 14-10-2018 YP_0525 4bd9c786e7b6cecb4f51ce9c569acf13 156 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 8 140 3.2E-51 T 14-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 YP_1027 49e2468dfb69696961e860879d3ad1b9 312 Gene3D G3DSA:1.20.1510.10 12 208 4.5E-52 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily YP_1027 49e2468dfb69696961e860879d3ad1b9 312 SUPERFAMILY SSF160240 212 287 5.1E-9 T 14-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 YP_1027 49e2468dfb69696961e860879d3ad1b9 312 SUPERFAMILY SSF161111 10 209 2.75E-63 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily YP_1027 49e2468dfb69696961e860879d3ad1b9 312 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 12 288 1.2E-96 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 YP_1027 49e2468dfb69696961e860879d3ad1b9 312 Pfam PF01545 Cation efflux family 16 208 2.0E-54 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 YP_1027 49e2468dfb69696961e860879d3ad1b9 312 Hamap MF_00552 Zinc transporter ZitB [zitB]. 3 307 66.253 T 14-10-2018 IPR023500 Zinc transporter ZitB GO:0005385|GO:0006829|GO:0016020 YP_pCD22 d5b6dd60b8d84fa70fd319a492e3cc5c 221 TIGRFAM TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family 30 198 6.5E-48 T 14-10-2018 IPR012842 Type III secretion system HrpE/YscL YP_pCD22 d5b6dd60b8d84fa70fd319a492e3cc5c 221 SUPERFAMILY SSF160527 114 211 2.35E-5 T 14-10-2018 YP_pCD22 d5b6dd60b8d84fa70fd319a492e3cc5c 221 Pfam PF02108 Flagellar assembly protein FliH 85 205 9.0E-19 T 14-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YP_3920 4d6c09320337a5825ddf91d1d8531f5e 271 Pfam PF00005 ABC transporter 28 161 1.0E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3920 4d6c09320337a5825ddf91d1d8531f5e 271 SUPERFAMILY SSF52540 13 213 2.0E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3920 4d6c09320337a5825ddf91d1d8531f5e 271 SMART SM00382 37 211 2.6E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_3920 4d6c09320337a5825ddf91d1d8531f5e 271 Gene3D G3DSA:3.40.50.300 13 261 9.6E-61 T 14-10-2018 YP_3920 4d6c09320337a5825ddf91d1d8531f5e 271 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3018 780ac8ab015a02d520bb10f3b045038f 377 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 269 284 2.8E-36 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_3018 780ac8ab015a02d520bb10f3b045038f 377 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 299 320 2.8E-36 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_3018 780ac8ab015a02d520bb10f3b045038f 377 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 225 242 2.8E-36 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_3018 780ac8ab015a02d520bb10f3b045038f 377 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 9 31 2.8E-36 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_3018 780ac8ab015a02d520bb10f3b045038f 377 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 205 223 2.8E-36 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_3018 780ac8ab015a02d520bb10f3b045038f 377 SUPERFAMILY SSF160544 248 352 5.62E-37 T 14-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal YP_3018 780ac8ab015a02d520bb10f3b045038f 377 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 351 4.3E-107 T 14-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 YP_3018 780ac8ab015a02d520bb10f3b045038f 377 Gene3D G3DSA:3.40.1690.10 214 355 4.4E-54 T 14-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal YP_3018 780ac8ab015a02d520bb10f3b045038f 377 Pfam PF01312 FlhB HrpN YscU SpaS Family 6 344 4.1E-109 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YP_1279 1c9966eaec7ede3d8662465b82980ef4 665 Gene3D G3DSA:2.40.170.20 173 665 2.1E-142 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_1279 1c9966eaec7ede3d8662465b82980ef4 665 SUPERFAMILY SSF56935 39 665 2.52E-126 T 14-10-2018 YP_1279 1c9966eaec7ede3d8662465b82980ef4 665 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 46 - T 14-10-2018 IPR010916 TonB box, conserved site YP_1279 1c9966eaec7ede3d8662465b82980ef4 665 Pfam PF00593 TonB dependent receptor 230 663 2.5E-58 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YP_1279 1c9966eaec7ede3d8662465b82980ef4 665 Gene3D G3DSA:2.170.130.10 34 167 7.9E-40 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YP_1279 1c9966eaec7ede3d8662465b82980ef4 665 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 162 6.9E-27 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain YP_3710 e6da1e0997ac243344326574e19cd4fc 394 Pfam PF06965 Na+/H+ antiporter 1 7 380 2.9E-150 T 14-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 YP_3710 e6da1e0997ac243344326574e19cd4fc 394 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 5 388 23.599 T 14-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 YP_3710 e6da1e0997ac243344326574e19cd4fc 394 Gene3D G3DSA:1.20.1530.10 2 388 1.7E-155 T 14-10-2018 IPR023171 Na/H antiporter domain superfamily YP_3710 e6da1e0997ac243344326574e19cd4fc 394 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 8 380 6.0E-174 T 14-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 YP_3422 dcd237fdaaa6652770b3ac66f5f9d12c 690 Pfam PF00593 TonB dependent receptor 227 688 1.3E-41 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YP_3422 dcd237fdaaa6652770b3ac66f5f9d12c 690 Gene3D G3DSA:2.40.170.20 39 690 8.6E-156 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_3422 dcd237fdaaa6652770b3ac66f5f9d12c 690 Pfam PF07715 TonB-dependent Receptor Plug Domain 47 150 6.8E-16 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain YP_3422 dcd237fdaaa6652770b3ac66f5f9d12c 690 SUPERFAMILY SSF56935 31 690 4.27E-120 T 14-10-2018 YP_1739 101e25b2ae6abc1602de23a4f17b2def 263 SUPERFAMILY SSF46785 13 86 8.84E-16 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1739 101e25b2ae6abc1602de23a4f17b2def 263 Pfam PF01614 Bacterial transcriptional regulator 129 254 1.2E-40 T 14-10-2018 IPR014757 Transcription regulator IclR, C-terminal YP_1739 101e25b2ae6abc1602de23a4f17b2def 263 Pfam PF09339 IclR helix-turn-helix domain 15 65 4.5E-14 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 YP_1739 101e25b2ae6abc1602de23a4f17b2def 263 SMART SM00346 13 102 1.4E-36 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 YP_1739 101e25b2ae6abc1602de23a4f17b2def 263 SUPERFAMILY SSF55781 77 259 4.58E-52 T 14-10-2018 YP_1739 101e25b2ae6abc1602de23a4f17b2def 263 Gene3D G3DSA:3.30.450.40 85 263 6.1E-65 T 14-10-2018 IPR029016 GAF-like domain superfamily YP_1739 101e25b2ae6abc1602de23a4f17b2def 263 Gene3D G3DSA:1.10.10.10 6 82 2.3E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1260 627ed0e0f8351fa72a33c708594d5289 321 SUPERFAMILY SSF161098 33 312 4.49E-56 T 14-10-2018 IPR035906 MetI-like superfamily YP_1260 627ed0e0f8351fa72a33c708594d5289 321 Gene3D G3DSA:1.10.3720.10 32 316 1.5E-54 T 14-10-2018 IPR035906 MetI-like superfamily YP_1260 627ed0e0f8351fa72a33c708594d5289 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 317 5.6E-23 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_pCD20 383929e1389aeb6b57172aca02503c5a 88 Pfam PF01527 Transposase 2 71 3.9E-22 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 YP_pCD20 383929e1389aeb6b57172aca02503c5a 88 SUPERFAMILY SSF46689 1 73 1.02E-12 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2864 9133ec9ae89faffcb6810ce59074fd27 718 Pfam PF13193 AMP-binding enzyme C-terminal domain 631 701 1.6E-5 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain YP_2864 9133ec9ae89faffcb6810ce59074fd27 718 Pfam PF00501 AMP-binding enzyme 231 619 7.0E-66 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YP_2864 9133ec9ae89faffcb6810ce59074fd27 718 SUPERFAMILY SSF56801 205 714 1.7E-97 T 14-10-2018 YP_2864 9133ec9ae89faffcb6810ce59074fd27 718 Hamap MF_01162 Bifunctional protein Aas [aas]. 1 717 59.842 T 14-10-2018 IPR023775 Bifunctional protein Aas GO:0006631|GO:0008654|GO:0008779|GO:0008922 KEGG: 00071+6.2.1.20|KEGG: 00564+2.3.1.40|MetaCyc: PWY-6622|MetaCyc: PWY-7032 YP_2864 9133ec9ae89faffcb6810ce59074fd27 718 SUPERFAMILY SSF69593 10 164 7.06E-18 T 14-10-2018 YP_2864 9133ec9ae89faffcb6810ce59074fd27 718 SMART SM00563 30 140 9.4E-23 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 YP_2864 9133ec9ae89faffcb6810ce59074fd27 718 Pfam PF01553 Acyltransferase 24 136 6.5E-15 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 YP_2864 9133ec9ae89faffcb6810ce59074fd27 718 ProSitePatterns PS00455 Putative AMP-binding domain signature. 370 381 - T 14-10-2018 IPR020845 AMP-binding, conserved site YP_2864 9133ec9ae89faffcb6810ce59074fd27 718 Gene3D G3DSA:3.30.300.30 616 715 2.1E-8 T 14-10-2018 YP_2864 9133ec9ae89faffcb6810ce59074fd27 718 Gene3D G3DSA:3.40.50.12780 194 614 8.3E-76 T 14-10-2018 YP_2774 e7766844d9ecc68b7da289e85abe3766 267 SUPERFAMILY SSF51430 2 259 7.33E-76 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_2774 e7766844d9ecc68b7da289e85abe3766 267 PIRSF PIRSF000097 1 266 1.2E-62 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_2774 e7766844d9ecc68b7da289e85abe3766 267 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 114 131 - T 14-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 YP_2774 e7766844d9ecc68b7da289e85abe3766 267 Gene3D G3DSA:3.20.20.100 1 267 2.0E-85 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_2774 e7766844d9ecc68b7da289e85abe3766 267 Pfam PF00248 Aldo/keto reductase family 8 250 2.6E-45 T 14-10-2018 IPR023210 NADP-dependent oxidoreductase domain YP_2774 e7766844d9ecc68b7da289e85abe3766 267 PRINTS PR00069 Aldo-keto reductase signature 25 49 3.3E-43 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_2774 e7766844d9ecc68b7da289e85abe3766 267 PRINTS PR00069 Aldo-keto reductase signature 149 178 3.3E-43 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_2774 e7766844d9ecc68b7da289e85abe3766 267 PRINTS PR00069 Aldo-keto reductase signature 114 131 3.3E-43 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_2774 e7766844d9ecc68b7da289e85abe3766 267 PRINTS PR00069 Aldo-keto reductase signature 186 210 3.3E-43 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_2774 e7766844d9ecc68b7da289e85abe3766 267 PRINTS PR00069 Aldo-keto reductase signature 81 99 3.3E-43 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_2774 e7766844d9ecc68b7da289e85abe3766 267 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 29 46 - T 14-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 YP_2893 8078c1d02b04e6d977fecf7ff6849af5 129 Gene3D G3DSA:3.30.70.260 33 113 5.1E-33 T 14-10-2018 YP_2893 8078c1d02b04e6d977fecf7ff6849af5 129 Pfam PF13721 SecD export protein N-terminal TM region 11 106 4.3E-20 T 14-10-2018 IPR027398 SecD export protein N-terminal TM domain YP_2893 8078c1d02b04e6d977fecf7ff6849af5 129 Hamap MF_00904 Modulator protein MzrA [mzrA]. 10 119 25.263 T 14-10-2018 IPR026574 Modulator protein MzrA YP_3820 8f9f43d89fac8ee1f99084e7f9ea47f5 134 Pfam PF06295 Protein of unknown function (DUF1043) 6 127 7.5E-50 T 14-10-2018 IPR009386 Protein of unknown function DUF1043 YP_3820 8f9f43d89fac8ee1f99084e7f9ea47f5 134 PIRSF PIRSF006318 1 134 9.9E-52 T 14-10-2018 IPR009386 Protein of unknown function DUF1043 YP_1966 c7663b44ac18e5bdc3bba9fd9be6784c 96 Pfam PF07383 Protein of unknown function (DUF1496) 36 94 9.3E-25 T 14-10-2018 IPR009971 Protein of unknown function DUF1496 YP_1194 2eddd6245f712bc18a4d423aa6e77f7f 77 SUPERFAMILY SSF158997 18 71 1.19E-19 T 14-10-2018 YP_1194 2eddd6245f712bc18a4d423aa6e77f7f 77 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 18 71 26.854 T 14-10-2018 IPR038053 Uncharacterised protein family UPF0434 YP_1194 2eddd6245f712bc18a4d423aa6e77f7f 77 Pfam PF03966 Trm112p-like protein 19 58 8.1E-9 T 14-10-2018 IPR005651 Trm112-like YP_1194 2eddd6245f712bc18a4d423aa6e77f7f 77 Gene3D G3DSA:2.20.25.10 25 77 8.8E-23 T 14-10-2018 YP_3790 d7c44efd0acb4d07efbf142e5d0f38ac 443 SUPERFAMILY SSF53335 61 286 5.15E-14 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3790 d7c44efd0acb4d07efbf142e5d0f38ac 443 Gene3D G3DSA:3.40.50.150 2 115 4.6E-9 T 14-10-2018 YP_3790 d7c44efd0acb4d07efbf142e5d0f38ac 443 Pfam PF01555 DNA methylase 24 96 6.3E-6 T 14-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 YP_0725 af06db5f78e75f6c54fb6d8b152fb969 1229 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1110 1181 3.1E-15 T 14-10-2018 YP_0725 af06db5f78e75f6c54fb6d8b152fb969 1229 Gene3D G3DSA:3.40.50.300 995 1221 5.3E-28 T 14-10-2018 YP_0725 af06db5f78e75f6c54fb6d8b152fb969 1229 SUPERFAMILY SSF52540 1005 1199 9.7E-17 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0725 af06db5f78e75f6c54fb6d8b152fb969 1229 SUPERFAMILY SSF52540 1 375 6.93E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0725 af06db5f78e75f6c54fb6d8b152fb969 1229 Pfam PF13476 AAA domain 5 237 1.1E-26 T 14-10-2018 IPR038729 Rad50/SbcC-type AAA domain YP_0725 af06db5f78e75f6c54fb6d8b152fb969 1229 Gene3D G3DSA:3.40.50.300 1 285 1.1E-46 T 14-10-2018 YP_1024 ffdf24df3dad296082afff719d388ab6 111 Pfam PF07769 psiF repeat 76 108 8.8E-19 T 14-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat YP_1024 ffdf24df3dad296082afff719d388ab6 111 Pfam PF07769 psiF repeat 33 65 5.9E-16 T 14-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat YP_3515 23d9aad897e78ecaa48ebcf8731d1ec0 259 Gene3D G3DSA:3.30.2010.10 68 158 1.0E-8 T 14-10-2018 YP_3515 23d9aad897e78ecaa48ebcf8731d1ec0 259 Pfam PF01435 Peptidase family M48 88 254 1.9E-24 T 14-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 YP_0661 9e44d2d69f4643ee5a967dde82e2930a 145 ProSitePatterns PS00194 Thioredoxin family active site. 56 74 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 YP_0661 9e44d2d69f4643ee5a967dde82e2930a 145 Pfam PF00085 Thioredoxin 37 137 1.3E-26 T 14-10-2018 IPR013766 Thioredoxin domain GO:0045454 YP_0661 9e44d2d69f4643ee5a967dde82e2930a 145 PRINTS PR00421 Thioredoxin family signature 55 63 6.7E-8 T 14-10-2018 YP_0661 9e44d2d69f4643ee5a967dde82e2930a 145 PRINTS PR00421 Thioredoxin family signature 63 72 6.7E-8 T 14-10-2018 YP_0661 9e44d2d69f4643ee5a967dde82e2930a 145 PRINTS PR00421 Thioredoxin family signature 103 114 6.7E-8 T 14-10-2018 YP_0661 9e44d2d69f4643ee5a967dde82e2930a 145 TIGRFAM TIGR01068 thioredoxin: thioredoxin 43 138 4.4E-33 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 YP_0661 9e44d2d69f4643ee5a967dde82e2930a 145 SUPERFAMILY SSF52833 25 144 8.18E-37 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_0661 9e44d2d69f4643ee5a967dde82e2930a 145 Gene3D G3DSA:3.40.30.10 35 145 2.3E-33 T 14-10-2018 YP_0661 9e44d2d69f4643ee5a967dde82e2930a 145 Gene3D G3DSA:2.20.28.140 1 34 2.6E-20 T 14-10-2018 YP_0661 9e44d2d69f4643ee5a967dde82e2930a 145 PIRSF PIRSF000077 35 139 1.7E-29 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 YP_0341 e76c073ddfe062cdb9b70567640bad59 113 SMART SM00418 8 86 5.7E-27 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 YP_0341 e76c073ddfe062cdb9b70567640bad59 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 43 58 1.7E-23 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 YP_0341 e76c073ddfe062cdb9b70567640bad59 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 30 41 1.7E-23 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 YP_0341 e76c073ddfe062cdb9b70567640bad59 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 1.7E-23 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 YP_0341 e76c073ddfe062cdb9b70567640bad59 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 58 73 1.7E-23 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 YP_0341 e76c073ddfe062cdb9b70567640bad59 113 SUPERFAMILY SSF46785 2 91 3.54E-25 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0341 e76c073ddfe062cdb9b70567640bad59 113 Pfam PF01022 Bacterial regulatory protein, arsR family 15 60 4.1E-14 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 YP_0341 e76c073ddfe062cdb9b70567640bad59 113 Gene3D G3DSA:1.10.10.10 4 92 1.2E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2878 4a453af15485f010da579c7d4fecad4d 202 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 20 40 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site YP_2878 4a453af15485f010da579c7d4fecad4d 202 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 20 39 0.0013 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site YP_2878 4a453af15485f010da579c7d4fecad4d 202 PIRSF PIRSF004525 6 202 3.4E-74 T 14-10-2018 IPR016419 Prepilin peptidase-dependent protein B, predicted YP_1428 c5a933213b11189272ebe3db38075353 296 SUPERFAMILY SSF53448 1 284 5.63E-60 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_1428 c5a933213b11189272ebe3db38075353 296 Pfam PF00483 Nucleotidyl transferase 5 272 2.8E-24 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 YP_1428 c5a933213b11189272ebe3db38075353 296 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 5 272 3.8E-114 T 14-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 YP_1428 c5a933213b11189272ebe3db38075353 296 Gene3D G3DSA:3.90.550.10 1 296 1.1E-85 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_pCRY07 86056a24550d9f7e956ea33c0fc323c9 236 SUPERFAMILY SSF53955 16 156 2.58E-15 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_pCRY07 86056a24550d9f7e956ea33c0fc323c9 236 Pfam PF01464 Transglycosylase SLT domain 11 146 2.7E-16 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 YP_2244 8069cb4f7b5ac3a7684d8f091924f6d9 292 Gene3D G3DSA:3.40.50.720 124 292 7.1E-36 T 14-10-2018 YP_2244 8069cb4f7b5ac3a7684d8f091924f6d9 292 Gene3D G3DSA:3.40.50.10860 24 123 2.1E-31 T 14-10-2018 YP_2244 8069cb4f7b5ac3a7684d8f091924f6d9 292 SUPERFAMILY SSF51735 126 286 2.44E-32 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2244 8069cb4f7b5ac3a7684d8f091924f6d9 292 SUPERFAMILY SSF53223 27 125 1.5E-26 T 14-10-2018 YP_2244 8069cb4f7b5ac3a7684d8f091924f6d9 292 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 46 113 4.7E-16 T 14-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 YP_1329 376024af99ebce676fa2cb2c0e16c4d2 712 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 10 707 6.3E-290 T 14-10-2018 IPR010020 Integral membrane protein, YccS/YhfK YP_1329 376024af99ebce676fa2cb2c0e16c4d2 712 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 10 707 0.0 T 14-10-2018 IPR010019 Integral membrane protein, YccS YP_1329 376024af99ebce676fa2cb2c0e16c4d2 712 Pfam PF13515 Fusaric acid resistance protein-like 408 527 3.9E-23 T 14-10-2018 YP_1329 376024af99ebce676fa2cb2c0e16c4d2 712 Pfam PF12805 FUSC-like inner membrane protein yccS 68 348 4.8E-113 T 14-10-2018 IPR032692 Integral membrane protein YccS, N-terminal YP_1552 a084d53b8395ba4a91aeb59074f27a72 466 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 106 1.0E-21 T 14-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 YP_1552 a084d53b8395ba4a91aeb59074f27a72 466 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 225 455 2.7E-62 T 14-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 YP_1552 a084d53b8395ba4a91aeb59074f27a72 466 Pfam PF07196 Flagellin hook IN motif 128 185 5.7E-12 T 14-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 YP_3330 ff5fb64263aeac447dfc6f97e6cfcc6d 531 Pfam PF01384 Phosphate transporter family 63 520 2.8E-87 T 14-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 YP_1659 1a583c81f012e4e7c18aa58bd1ed5c75 434 Pfam PF00425 chorismate binding enzyme 173 424 2.4E-70 T 14-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal YP_1659 1a583c81f012e4e7c18aa58bd1ed5c75 434 TIGRFAM TIGR03494 salicyl_syn: salicylate synthase 15 434 1.3E-204 T 14-10-2018 IPR019996 Salicylate synthase GO:0008909|GO:0016833 KEGG: 00130+5.4.4.2|KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6120|MetaCyc: PWY-6406|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YP_1659 1a583c81f012e4e7c18aa58bd1ed5c75 434 Gene3D G3DSA:3.60.120.10 1 434 2.4E-165 T 14-10-2018 IPR005801 ADC synthase GO:0009058 YP_1659 1a583c81f012e4e7c18aa58bd1ed5c75 434 SUPERFAMILY SSF56322 10 432 1.96E-96 T 14-10-2018 IPR005801 ADC synthase GO:0009058 YP_1010 ec2f4bd4d909cf39eb50faf220a68c39 426 Gene3D G3DSA:3.90.1150.10 10 415 3.7E-174 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_1010 ec2f4bd4d909cf39eb50faf220a68c39 426 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 1 424 50.936 T 14-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 YP_1010 ec2f4bd4d909cf39eb50faf220a68c39 426 Pfam PF00202 Aminotransferase class-III 27 420 9.2E-130 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_1010 ec2f4bd4d909cf39eb50faf220a68c39 426 PIRSF PIRSF000521 183 423 1.6E-21 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_1010 ec2f4bd4d909cf39eb50faf220a68c39 426 PIRSF PIRSF000521 31 164 6.9E-7 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_1010 ec2f4bd4d909cf39eb50faf220a68c39 426 SUPERFAMILY SSF53383 1 421 6.34E-134 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_1010 ec2f4bd4d909cf39eb50faf220a68c39 426 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 13 421 3.8E-185 T 14-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 YP_1010 ec2f4bd4d909cf39eb50faf220a68c39 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 242 279 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YP_1010 ec2f4bd4d909cf39eb50faf220a68c39 426 Gene3D G3DSA:3.40.640.10 61 330 3.7E-174 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_0248 764c5ca670cac3ce8f5d38d53fd309f1 269 SUPERFAMILY SSF53098 101 263 5.18E-37 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_0248 764c5ca670cac3ce8f5d38d53fd309f1 269 Pfam PF13683 Integrase core domain 191 256 2.3E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_0248 764c5ca670cac3ce8f5d38d53fd309f1 269 Pfam PF13276 HTH-like domain 34 88 9.8E-12 T 14-10-2018 IPR025948 HTH-like domain YP_0248 764c5ca670cac3ce8f5d38d53fd309f1 269 Gene3D G3DSA:3.30.420.10 98 253 3.6E-19 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_2882 fc4adf2a95193fc0becb9c777c86a593 962 Gene3D G3DSA:3.30.830.10 275 504 2.1E-67 T 14-10-2018 YP_2882 fc4adf2a95193fc0becb9c777c86a593 962 SUPERFAMILY SSF63411 267 504 4.23E-65 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 YP_2882 fc4adf2a95193fc0becb9c777c86a593 962 SUPERFAMILY SSF63411 506 727 5.32E-46 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 YP_2882 fc4adf2a95193fc0becb9c777c86a593 962 Gene3D G3DSA:3.30.830.10 654 919 4.1E-130 T 14-10-2018 YP_2882 fc4adf2a95193fc0becb9c777c86a593 962 Gene3D G3DSA:3.30.830.10 27 273 5.1E-79 T 14-10-2018 YP_2882 fc4adf2a95193fc0becb9c777c86a593 962 Pfam PF16187 Middle or third domain of peptidase_M16 402 676 1.1E-55 T 14-10-2018 IPR032632 Peptidase M16, middle/third domain YP_2882 fc4adf2a95193fc0becb9c777c86a593 962 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 77 100 - T 14-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 YP_2882 fc4adf2a95193fc0becb9c777c86a593 962 Gene3D G3DSA:3.30.830.10 506 887 4.1E-130 T 14-10-2018 YP_2882 fc4adf2a95193fc0becb9c777c86a593 962 SUPERFAMILY SSF63411 35 263 6.23E-52 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 YP_2882 fc4adf2a95193fc0becb9c777c86a593 962 SUPERFAMILY SSF63411 740 933 2.0E-44 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 YP_2882 fc4adf2a95193fc0becb9c777c86a593 962 Pfam PF00675 Insulinase (Peptidase family M16) 57 193 1.6E-33 T 14-10-2018 IPR011765 Peptidase M16, N-terminal YP_2882 fc4adf2a95193fc0becb9c777c86a593 962 Pfam PF05193 Peptidase M16 inactive domain 683 859 2.1E-9 T 14-10-2018 IPR007863 Peptidase M16, C-terminal YP_2882 fc4adf2a95193fc0becb9c777c86a593 962 Pfam PF05193 Peptidase M16 inactive domain 218 394 6.1E-19 T 14-10-2018 IPR007863 Peptidase M16, C-terminal YP_1398 93278ac40bb8894185f84ed4e38864c6 506 Gene3D G3DSA:3.40.50.300 2 250 1.4E-57 T 14-10-2018 YP_1398 93278ac40bb8894185f84ed4e38864c6 506 ProSitePatterns PS00211 ABC transporters family signature. 407 421 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_1398 93278ac40bb8894185f84ed4e38864c6 506 SUPERFAMILY SSF52540 12 236 5.52E-56 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1398 93278ac40bb8894185f84ed4e38864c6 506 Pfam PF00005 ABC transporter 29 178 3.8E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1398 93278ac40bb8894185f84ed4e38864c6 506 Pfam PF00005 ABC transporter 280 434 5.6E-17 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_1398 93278ac40bb8894185f84ed4e38864c6 506 SMART SM00382 288 483 2.1 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1398 93278ac40bb8894185f84ed4e38864c6 506 SMART SM00382 38 233 1.3E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_1398 93278ac40bb8894185f84ed4e38864c6 506 SUPERFAMILY SSF52540 254 494 7.17E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1398 93278ac40bb8894185f84ed4e38864c6 506 Gene3D G3DSA:3.40.50.300 251 503 1.1E-37 T 14-10-2018 YP_3486 f4940b3496d1640957ffe720f20eabb9 323 SUPERFAMILY SSF53807 15 313 1.1E-39 T 14-10-2018 YP_3486 f4940b3496d1640957ffe720f20eabb9 323 Gene3D G3DSA:3.40.50.1980 1 321 4.3E-80 T 14-10-2018 YP_3486 f4940b3496d1640957ffe720f20eabb9 323 Pfam PF01497 Periplasmic binding protein 32 265 1.6E-22 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain YP_1559 e5c6e8288215a49c165596dc1e84e010 158 Pfam PF02661 Fic/DOC family 10 93 1.4E-9 T 14-10-2018 IPR003812 Fido domain YP_1559 e5c6e8288215a49c165596dc1e84e010 158 TIGRFAM TIGR01550 DOC_P1: death-on-curing family protein 10 130 2.9E-48 T 14-10-2018 IPR006440 Death on curing protein GO:0016301 YP_1559 e5c6e8288215a49c165596dc1e84e010 158 Gene3D G3DSA:1.20.120.1870 8 138 4.6E-26 T 14-10-2018 YP_0431 6fb6b3a514c8c8785e82d2d7248f6a40 328 SUPERFAMILY SSF46785 22 102 3.63E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0431 6fb6b3a514c8c8785e82d2d7248f6a40 328 Gene3D G3DSA:3.40.190.10 109 307 2.0E-52 T 14-10-2018 YP_0431 6fb6b3a514c8c8785e82d2d7248f6a40 328 Pfam PF03466 LysR substrate binding domain 106 310 5.1E-33 T 14-10-2018 IPR005119 LysR, substrate-binding YP_0431 6fb6b3a514c8c8785e82d2d7248f6a40 328 SUPERFAMILY SSF53850 106 311 3.08E-37 T 14-10-2018 YP_0431 6fb6b3a514c8c8785e82d2d7248f6a40 328 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 22 79 1.3E-16 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_0431 6fb6b3a514c8c8785e82d2d7248f6a40 328 Gene3D G3DSA:3.40.190.10 180 281 2.0E-52 T 14-10-2018 YP_0431 6fb6b3a514c8c8785e82d2d7248f6a40 328 Gene3D G3DSA:1.10.10.10 21 108 3.3E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3929 fb5ca35d188df8a9d417bf49c4902e14 376 SUPERFAMILY SSF51735 17 176 3.94E-30 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3929 fb5ca35d188df8a9d417bf49c4902e14 376 Gene3D G3DSA:3.40.50.720 22 148 7.8E-25 T 14-10-2018 YP_3929 fb5ca35d188df8a9d417bf49c4902e14 376 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 23 145 7.8E-14 T 14-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 YP_3929 fb5ca35d188df8a9d417bf49c4902e14 376 Gene3D G3DSA:3.30.360.10 149 372 9.1E-32 T 14-10-2018 YP_3929 fb5ca35d188df8a9d417bf49c4902e14 376 SUPERFAMILY SSF55347 152 312 5.01E-16 T 14-10-2018 YP_0604 c869f32e94e2333fe4129edb7b712a59 331 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 14-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 YP_0604 c869f32e94e2333fe4129edb7b712a59 331 Pfam PF01136 Peptidase family U32 76 330 9.2E-66 T 14-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 YP_0604 c869f32e94e2333fe4129edb7b712a59 331 SUPERFAMILY SSF51391 11 160 3.66E-5 T 14-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 YP_0508 505dbb43c7280d0891cf0e1a7ec3b6dc 132 Pfam PF13698 Domain of unknown function (DUF4156) 41 131 5.4E-32 T 14-10-2018 IPR025294 Protein of unknown function DUF4156 YP_1320 c3f01d097f5f284d43fb9efa063f5b36 114 ProDom PD073777 YEJG CYTOPLASMIC SIMILAR Y2914 YPO1269 STY2456 ECS3073 ESCHERICHIA COLI 1 114 6.0E-63 T 14-10-2018 IPR020489 Uncharacterised protein family YejG YP_1320 c3f01d097f5f284d43fb9efa063f5b36 114 Pfam PF13989 YejG-like protein 4 108 1.9E-51 T 14-10-2018 IPR020489 Uncharacterised protein family YejG YP_2275 ba616b46c320cd6b51a0f3fe340a2684 218 PRINTS PR01549 Autoinducer synthesis protein signature 23 42 3.5E-63 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_2275 ba616b46c320cd6b51a0f3fe340a2684 218 PRINTS PR01549 Autoinducer synthesis protein signature 66 84 3.5E-63 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_2275 ba616b46c320cd6b51a0f3fe340a2684 218 PRINTS PR01549 Autoinducer synthesis protein signature 98 110 3.5E-63 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_2275 ba616b46c320cd6b51a0f3fe340a2684 218 PRINTS PR01549 Autoinducer synthesis protein signature 167 184 3.5E-63 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_2275 ba616b46c320cd6b51a0f3fe340a2684 218 PRINTS PR01549 Autoinducer synthesis protein signature 43 65 3.5E-63 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_2275 ba616b46c320cd6b51a0f3fe340a2684 218 PRINTS PR01549 Autoinducer synthesis protein signature 145 166 3.5E-63 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_2275 ba616b46c320cd6b51a0f3fe340a2684 218 PRINTS PR01549 Autoinducer synthesis protein signature 123 144 3.5E-63 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_2275 ba616b46c320cd6b51a0f3fe340a2684 218 SUPERFAMILY SSF55729 5 213 2.44E-38 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_2275 ba616b46c320cd6b51a0f3fe340a2684 218 ProSitePatterns PS00949 Autoinducer synthase family signature. 27 52 - T 14-10-2018 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_2275 ba616b46c320cd6b51a0f3fe340a2684 218 Pfam PF00765 Autoinducer synthase 12 192 3.0E-82 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YP_2275 ba616b46c320cd6b51a0f3fe340a2684 218 Gene3D G3DSA:3.40.630.30 5 215 8.6E-49 T 14-10-2018 YP_1616 2b9e9010922e57c059cbed20553c9504 106 Gene3D G3DSA:1.10.10.710 21 90 5.5E-14 T 14-10-2018 IPR038627 YebG-like superfamily YP_1616 2b9e9010922e57c059cbed20553c9504 106 Pfam PF07130 YebG protein 1 74 4.9E-35 T 14-10-2018 IPR009813 Uncharacterised protein family YebG YP_0064 1a9f97b936ee6279a974c2c056b68053 515 Gene3D G3DSA:3.40.1450.10 79 313 2.3E-215 T 14-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0064 1a9f97b936ee6279a974c2c056b68053 515 SUPERFAMILY SSF53649 5 511 6.8E-74 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YP_0064 1a9f97b936ee6279a974c2c056b68053 515 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 85 300 1.6E-82 T 14-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0064 1a9f97b936ee6279a974c2c056b68053 515 PIRSF PIRSF001492 1 515 4.1E-205 T 14-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0064 1a9f97b936ee6279a974c2c056b68053 515 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 6 512 4.1E-238 T 14-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0064 1a9f97b936ee6279a974c2c056b68053 515 SUPERFAMILY SSF64158 79 311 1.7E-85 T 14-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_0064 1a9f97b936ee6279a974c2c056b68053 515 Pfam PF01676 Metalloenzyme superfamily 6 501 2.5E-81 T 14-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 YP_0064 1a9f97b936ee6279a974c2c056b68053 515 Gene3D G3DSA:3.40.720.10 7 511 2.3E-215 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YP_0064 1a9f97b936ee6279a974c2c056b68053 515 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 6 513 49.948 T 14-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YP_1110 b8f8bc5d465199749e9adf230fbdcdbc 370 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 11 366 29.23 T 14-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_1110 b8f8bc5d465199749e9adf230fbdcdbc 370 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 321 345 - T 14-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_1110 b8f8bc5d465199749e9adf230fbdcdbc 370 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 17 364 4.9E-136 T 14-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_1110 b8f8bc5d465199749e9adf230fbdcdbc 370 Pfam PF01098 Cell cycle protein 21 364 7.0E-122 T 14-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YP_3040 771eee27b9b60a97a27510e20edc795e 221 Pfam PF02107 Flagellar L-ring protein 45 218 5.8E-58 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YP_3040 771eee27b9b60a97a27510e20edc795e 221 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 218 25.355 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YP_3040 771eee27b9b60a97a27510e20edc795e 221 PRINTS PR01008 Flagellar L-ring protein signature 66 78 4.3E-23 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YP_3040 771eee27b9b60a97a27510e20edc795e 221 PRINTS PR01008 Flagellar L-ring protein signature 181 195 4.3E-23 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YP_3040 771eee27b9b60a97a27510e20edc795e 221 PRINTS PR01008 Flagellar L-ring protein signature 160 176 4.3E-23 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YP_3040 771eee27b9b60a97a27510e20edc795e 221 PRINTS PR01008 Flagellar L-ring protein signature 197 211 4.3E-23 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YP_3040 771eee27b9b60a97a27510e20edc795e 221 PRINTS PR01008 Flagellar L-ring protein signature 134 149 4.3E-23 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YP_1949 b3939d54662fe4b2c282c90230ba4050 400 Pfam PF07690 Major Facilitator Superfamily 10 351 4.9E-46 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_1949 b3939d54662fe4b2c282c90230ba4050 400 SUPERFAMILY SSF103473 4 360 3.53E-59 T 14-10-2018 IPR036259 MFS transporter superfamily YP_1949 b3939d54662fe4b2c282c90230ba4050 400 ProSitePatterns PS00216 Sugar transport proteins signature 1. 58 74 - T 14-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 YP_1949 b3939d54662fe4b2c282c90230ba4050 400 PRINTS PR01035 Tetracycline resistance protein signature 44 63 1.9E-7 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 YP_1949 b3939d54662fe4b2c282c90230ba4050 400 PRINTS PR01035 Tetracycline resistance protein signature 129 151 1.9E-7 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 YP_1949 b3939d54662fe4b2c282c90230ba4050 400 PRINTS PR01035 Tetracycline resistance protein signature 302 322 1.9E-7 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 YP_1949 b3939d54662fe4b2c282c90230ba4050 400 PRINTS PR01035 Tetracycline resistance protein signature 14 30 1.9E-7 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 YP_1949 b3939d54662fe4b2c282c90230ba4050 400 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 3 374 2.7E-74 T 14-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 YP_1949 b3939d54662fe4b2c282c90230ba4050 400 Gene3D G3DSA:1.20.1720.10 4 378 3.0E-92 T 14-10-2018 YP_2894 f2d4e963a1247a4369516008bab923fd 232 Pfam PF09335 SNARE associated Golgi protein 48 172 6.9E-20 T 14-10-2018 IPR032816 SNARE associated Golgi protein YP_2931 085b52744a4a39446f24c44356c022a4 293 SUPERFAMILY SSF161098 52 281 3.92E-45 T 14-10-2018 IPR035906 MetI-like superfamily YP_2931 085b52744a4a39446f24c44356c022a4 293 Gene3D G3DSA:1.10.3720.10 48 292 1.8E-55 T 14-10-2018 IPR035906 MetI-like superfamily YP_2931 085b52744a4a39446f24c44356c022a4 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 283 6.9E-10 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1414 b75dba4e6bbdb5376049f4f6aba7758b 202 SUPERFAMILY SSF51283 10 202 6.9E-62 T 14-10-2018 IPR036157 dUTPase-like superfamily YP_1414 b75dba4e6bbdb5376049f4f6aba7758b 202 Hamap MF_00146 dCTP deaminase [dcd]. 10 199 35.137 T 14-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 YP_1414 b75dba4e6bbdb5376049f4f6aba7758b 202 Pfam PF00692 dUTPase 88 194 1.7E-10 T 14-10-2018 IPR029054 dUTPase-like YP_1414 b75dba4e6bbdb5376049f4f6aba7758b 202 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 11 199 1.8E-70 T 14-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 YP_1414 b75dba4e6bbdb5376049f4f6aba7758b 202 Gene3D G3DSA:2.70.40.10 10 171 6.7E-52 T 14-10-2018 IPR036157 dUTPase-like superfamily YP_2909 2763d41105e855fbfd3a83991c86ca5f 682 Gene3D G3DSA:3.40.50.720 385 676 1.9E-118 T 14-10-2018 YP_2909 2763d41105e855fbfd3a83991c86ca5f 682 SUPERFAMILY SSF51905 470 660 8.39E-22 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2909 2763d41105e855fbfd3a83991c86ca5f 682 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 386 644 8.5E-22 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YP_2909 2763d41105e855fbfd3a83991c86ca5f 682 SUPERFAMILY SSF51971 343 528 4.83E-41 T 14-10-2018 YP_2909 2763d41105e855fbfd3a83991c86ca5f 682 Gene3D G3DSA:3.20.20.70 12 378 3.7E-125 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_2909 2763d41105e855fbfd3a83991c86ca5f 682 SUPERFAMILY SSF51395 11 372 4.64E-112 T 14-10-2018 YP_2909 2763d41105e855fbfd3a83991c86ca5f 682 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 628 644 3.8E-12 T 14-10-2018 YP_2909 2763d41105e855fbfd3a83991c86ca5f 682 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 507 525 3.8E-12 T 14-10-2018 YP_2909 2763d41105e855fbfd3a83991c86ca5f 682 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 387 406 3.8E-12 T 14-10-2018 YP_2909 2763d41105e855fbfd3a83991c86ca5f 682 Gene3D G3DSA:3.50.50.60 479 635 1.9E-118 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_2909 2763d41105e855fbfd3a83991c86ca5f 682 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 16 341 3.1E-90 T 14-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 YP_2909 2763d41105e855fbfd3a83991c86ca5f 682 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 386 408 1.5E-5 T 14-10-2018 YP_2909 2763d41105e855fbfd3a83991c86ca5f 682 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 629 643 1.5E-5 T 14-10-2018 YP_1945 80ccbd69b2fdd279d3bd89eea6f40ac8 524 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 1 511 8.1E-282 T 14-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 YP_1945 80ccbd69b2fdd279d3bd89eea6f40ac8 524 TIGRFAM TIGR00774 NhaB: Na+/H+ antiporter NhaB 1 512 3.3E-280 T 14-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 YP_1945 80ccbd69b2fdd279d3bd89eea6f40ac8 524 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 524 367.791 T 14-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 YP_1906 9e524d1239f0091d079daf27207fdd0f 320 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 14 306 6.8E-94 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 YP_1906 9e524d1239f0091d079daf27207fdd0f 320 TIGRFAM TIGR02208 lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 11 315 3.4E-133 T 14-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 YP_1906 9e524d1239f0091d079daf27207fdd0f 320 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 5 311 53.918 T 14-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 YP_1906 9e524d1239f0091d079daf27207fdd0f 320 PIRSF PIRSF026649 11 315 3.1E-92 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 YP_pMT083 36abcab830c56dee28681a1e88fd6c32 833 Pfam PF00577 Outer membrane usher protein 186 740 9.0E-190 T 14-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YP_pMT083 36abcab830c56dee28681a1e88fd6c32 833 Gene3D G3DSA:3.10.20.410 40 158 1.9E-39 T 14-10-2018 YP_pMT083 36abcab830c56dee28681a1e88fd6c32 833 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 294 304 - T 14-10-2018 IPR018030 Fimbrial membrane usher, conserved site YP_pMT083 36abcab830c56dee28681a1e88fd6c32 833 Gene3D G3DSA:2.60.40.2070 746 833 1.7E-30 T 14-10-2018 YP_pMT083 36abcab830c56dee28681a1e88fd6c32 833 Gene3D G3DSA:2.60.40.2610 656 745 1.1E-28 T 14-10-2018 YP_pMT083 36abcab830c56dee28681a1e88fd6c32 833 SUPERFAMILY SSF141729 23 144 3.53E-27 T 14-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 YP_pMT083 36abcab830c56dee28681a1e88fd6c32 833 Pfam PF13954 PapC N-terminal domain 25 169 8.9E-37 T 14-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 YP_pMT083 36abcab830c56dee28681a1e88fd6c32 833 Pfam PF13953 PapC C-terminal domain 750 815 5.0E-19 T 14-10-2018 IPR025949 PapC-like, C-terminal domain YP_pMT083 36abcab830c56dee28681a1e88fd6c32 833 Gene3D G3DSA:2.60.40.3110 252 341 9.8E-32 T 14-10-2018 YP_1846 9f6a98977db54dc606548faa5d49e190 140 Gene3D G3DSA:1.20.1290.10 14 140 5.4E-38 T 14-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 YP_1846 9f6a98977db54dc606548faa5d49e190 140 SUPERFAMILY SSF69118 38 138 1.44E-30 T 14-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 YP_1846 9f6a98977db54dc606548faa5d49e190 140 Pfam PF02627 Carboxymuconolactone decarboxylase family 50 134 2.6E-22 T 14-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 YP_2038 66332152bdf87424b32dfa33c9b58fce 233 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 7 209 3.8E-83 T 14-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 YP_2038 66332152bdf87424b32dfa33c9b58fce 233 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 1 210 28.008 T 14-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 YP_2038 66332152bdf87424b32dfa33c9b58fce 233 PIRSF PIRSF006102 1 218 9.1E-77 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YP_2038 66332152bdf87424b32dfa33c9b58fce 233 Pfam PF02508 Rnf-Nqr subunit, membrane protein 6 199 4.8E-63 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YP_2981 85404a8df96fe0ddee3fdc5341fb2766 275 Gene3D G3DSA:3.60.21.10 4 272 1.0E-67 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like YP_2981 85404a8df96fe0ddee3fdc5341fb2766 275 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 206 261 5.0E-27 T 14-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 YP_2981 85404a8df96fe0ddee3fdc5341fb2766 275 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 15 261 39.963 T 14-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 YP_2981 85404a8df96fe0ddee3fdc5341fb2766 275 Pfam PF00149 Calcineurin-like phosphoesterase 16 207 8.6E-21 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 YP_2981 85404a8df96fe0ddee3fdc5341fb2766 275 SUPERFAMILY SSF56300 16 273 9.99E-61 T 14-10-2018 YP_0566 bb5f92968a2333c97a258788359e8563 156 SUPERFAMILY SSF55252 82 151 2.88E-18 T 14-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 YP_0566 bb5f92968a2333c97a258788359e8563 156 TIGRFAM TIGR01529 argR_whole: arginine repressor 11 151 1.7E-45 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 YP_0566 bb5f92968a2333c97a258788359e8563 156 Pfam PF01316 Arginine repressor, DNA binding domain 6 74 6.4E-25 T 14-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 YP_0566 bb5f92968a2333c97a258788359e8563 156 SUPERFAMILY SSF46785 3 77 8.98E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0566 bb5f92968a2333c97a258788359e8563 156 Pfam PF02863 Arginine repressor, C-terminal domain 82 148 8.1E-21 T 14-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 YP_0566 bb5f92968a2333c97a258788359e8563 156 PRINTS PR01467 Bacterial arginine repressor signature 25 38 2.5E-23 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 YP_0566 bb5f92968a2333c97a258788359e8563 156 PRINTS PR01467 Bacterial arginine repressor signature 90 103 2.5E-23 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 YP_0566 bb5f92968a2333c97a258788359e8563 156 PRINTS PR01467 Bacterial arginine repressor signature 121 136 2.5E-23 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 YP_0566 bb5f92968a2333c97a258788359e8563 156 PRINTS PR01467 Bacterial arginine repressor signature 42 57 2.5E-23 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 YP_0566 bb5f92968a2333c97a258788359e8563 156 Gene3D G3DSA:3.30.1360.40 79 156 1.0E-29 T 14-10-2018 YP_0566 bb5f92968a2333c97a258788359e8563 156 Gene3D G3DSA:1.10.10.10 1 78 1.1E-34 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0566 bb5f92968a2333c97a258788359e8563 156 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 89 153 2.0E-31 T 14-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 YP_0566 bb5f92968a2333c97a258788359e8563 156 Hamap MF_00173 Arginine repressor [argR]. 1 155 59.096 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 YP_3927 a3b7e71f495f9503c83d8db2f8484b15 167 SUPERFAMILY SSF102546 1 129 5.36E-31 T 14-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 YP_3927 a3b7e71f495f9503c83d8db2f8484b15 167 Gene3D G3DSA:3.40.1650.10 3 131 2.9E-25 T 14-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 YP_3927 a3b7e71f495f9503c83d8db2f8484b15 167 Pfam PF05025 RbsD / FucU transport protein family 1 130 2.0E-30 T 14-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 YP_1698 a51c4f757f1bc455297eb0382412670a 155 Pfam PF13994 PgaD-like protein 5 134 3.0E-37 T 14-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 YP_1698 a51c4f757f1bc455297eb0382412670a 155 ProDom PD460230 MEMBRANE STORAGE INNER HAEMIN SYSTEM HMSS PGA BIOFILM PGAD TRANSMEMBRANE 1 137 2.0E-59 T 14-10-2018 YP_1698 a51c4f757f1bc455297eb0382412670a 155 TIGRFAM TIGR03940 PGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD 4 138 8.4E-40 T 14-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 YP_1778 c17e6c49f28ca6e1cf8975baaecfeff6 441 Gene3D G3DSA:3.40.50.1240 162 287 1.7E-166 T 14-10-2018 IPR029033 Histidine phosphatase superfamily YP_1778 c17e6c49f28ca6e1cf8975baaecfeff6 441 ProSitePatterns PS00616 Histidine acid phosphatases phosphohistidine signature. 36 50 - T 14-10-2018 IPR033379 Histidine acid phosphatase active site YP_1778 c17e6c49f28ca6e1cf8975baaecfeff6 441 Pfam PF00328 Histidine phosphatase superfamily (branch 2) 35 381 3.3E-19 T 14-10-2018 IPR000560 Histidine phosphatase superfamily, clade-2 YP_1778 c17e6c49f28ca6e1cf8975baaecfeff6 441 SUPERFAMILY SSF53254 31 438 1.14E-67 T 14-10-2018 IPR029033 Histidine phosphatase superfamily YP_1778 c17e6c49f28ca6e1cf8975baaecfeff6 441 Gene3D G3DSA:3.40.50.1240 35 428 1.7E-166 T 14-10-2018 IPR029033 Histidine phosphatase superfamily YP_3955 7ca9a99246759a2156347b755940c830 438 TIGRFAM TIGR03354 VI_FHA: type VI secretion system FHA domain protein 8 431 2.0E-112 T 14-10-2018 IPR017735 Type VI secretion system, FHA domain-containing protein YP_3955 7ca9a99246759a2156347b755940c830 438 SUPERFAMILY SSF49879 29 104 1.77E-5 T 14-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 YP_2341 68369a7e586875cdd5ba09a2f670fe50 115 Pfam PF05957 Bacterial protein of unknown function (DUF883) 23 115 2.5E-30 T 14-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 YP_0243 74b99ae53e91cdcf628bfe86214a3d6d 186 SUPERFAMILY SSF57783 15 55 8.33E-13 T 14-10-2018 YP_0243 74b99ae53e91cdcf628bfe86214a3d6d 186 SUPERFAMILY SSF57783 65 104 1.7E-13 T 14-10-2018 YP_0243 74b99ae53e91cdcf628bfe86214a3d6d 186 SUPERFAMILY SSF57783 106 143 6.12E-5 T 14-10-2018 YP_0243 74b99ae53e91cdcf628bfe86214a3d6d 186 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 109 147 7.7E-15 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 YP_0243 74b99ae53e91cdcf628bfe86214a3d6d 186 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 67 103 1.3E-16 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 YP_0243 74b99ae53e91cdcf628bfe86214a3d6d 186 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 18 54 3.2E-15 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 YP_0243 74b99ae53e91cdcf628bfe86214a3d6d 186 Gene3D G3DSA:3.30.65.10 7 55 3.1E-9 T 14-10-2018 YP_0243 74b99ae53e91cdcf628bfe86214a3d6d 186 Gene3D G3DSA:3.30.65.10 56 104 1.7E-9 T 14-10-2018 YP_1333 4c6b5827ed6b591c5308d3b55b4c565f 226 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 22 219 1.6E-45 T 14-10-2018 IPR018635 Uncharacterised protein family UPF0319 YP_1333 4c6b5827ed6b591c5308d3b55b4c565f 226 Hamap MF_00789 UPF0319 protein YccT [yccT]. 3 222 26.187 T 14-10-2018 IPR018635 Uncharacterised protein family UPF0319 YP_1613 fb1314f9c69db27e45abeb0da603c81f 683 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 5 411 1.6E-101 T 14-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 YP_1613 fb1314f9c69db27e45abeb0da603c81f 683 SUPERFAMILY SSF50993 1 413 3.92E-91 T 14-10-2018 YP_1613 fb1314f9c69db27e45abeb0da603c81f 683 SUPERFAMILY SSF53474 421 662 4.32E-48 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1613 fb1314f9c69db27e45abeb0da603c81f 683 Pfam PF00326 Prolyl oligopeptidase family 470 681 4.5E-70 T 14-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 YP_1613 fb1314f9c69db27e45abeb0da603c81f 683 Gene3D G3DSA:3.40.50.1820 23 679 6.7E-252 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1613 fb1314f9c69db27e45abeb0da603c81f 683 Gene3D G3DSA:2.130.10.120 74 412 6.7E-252 T 14-10-2018 YP_1613 fb1314f9c69db27e45abeb0da603c81f 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 479 503 9.1E-53 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 YP_1613 fb1314f9c69db27e45abeb0da603c81f 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 507 526 9.1E-53 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 YP_1613 fb1314f9c69db27e45abeb0da603c81f 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 613 635 9.1E-53 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 YP_1613 fb1314f9c69db27e45abeb0da603c81f 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 537 557 9.1E-53 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 YP_1613 fb1314f9c69db27e45abeb0da603c81f 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 453 471 9.1E-53 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 YP_1613 fb1314f9c69db27e45abeb0da603c81f 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 595 610 9.1E-53 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 YP_1233 ecfb1fc8cdf72b146fa34156fae26251 555 Pfam PF11398 Protein of unknown function (DUF2813) 1 377 1.5E-157 T 14-10-2018 IPR022602 Protein of unknown function DUF2813 YP_1233 ecfb1fc8cdf72b146fa34156fae26251 555 SUPERFAMILY SSF52540 1 335 1.3E-17 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1233 ecfb1fc8cdf72b146fa34156fae26251 555 Gene3D G3DSA:3.40.50.300 1 349 1.4E-12 T 14-10-2018 YP_3926 dedf47a76d0838d4a8f2589b999c17ea 310 Hamap MF_01987 Ribokinase [rbsK]. 2 301 20.856 T 14-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 YP_3926 dedf47a76d0838d4a8f2589b999c17ea 310 SUPERFAMILY SSF53613 2 302 2.34E-73 T 14-10-2018 IPR029056 Ribokinase-like YP_3926 dedf47a76d0838d4a8f2589b999c17ea 310 Pfam PF00294 pfkB family carbohydrate kinase 4 283 2.4E-51 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB YP_3926 dedf47a76d0838d4a8f2589b999c17ea 310 PRINTS PR00990 Ribokinase signature 173 188 1.2E-22 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YP_3926 dedf47a76d0838d4a8f2589b999c17ea 310 PRINTS PR00990 Ribokinase signature 105 118 1.2E-22 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YP_3926 dedf47a76d0838d4a8f2589b999c17ea 310 PRINTS PR00990 Ribokinase signature 6 27 1.2E-22 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YP_3926 dedf47a76d0838d4a8f2589b999c17ea 310 PRINTS PR00990 Ribokinase signature 217 228 1.2E-22 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YP_3926 dedf47a76d0838d4a8f2589b999c17ea 310 PRINTS PR00990 Ribokinase signature 33 52 1.2E-22 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YP_3926 dedf47a76d0838d4a8f2589b999c17ea 310 Gene3D G3DSA:3.40.1190.20 1 307 2.4E-81 T 14-10-2018 IPR029056 Ribokinase-like YP_3926 dedf47a76d0838d4a8f2589b999c17ea 310 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 246 259 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 YP_3761 08e561c72f0efad7eb16c1994d9dda99 360 Gene3D G3DSA:1.10.287.470 90 149 2.5E-71 T 14-10-2018 YP_3761 08e561c72f0efad7eb16c1994d9dda99 360 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 321 336 7.4E-5 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YP_3761 08e561c72f0efad7eb16c1994d9dda99 360 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 68 88 7.4E-5 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YP_3761 08e561c72f0efad7eb16c1994d9dda99 360 Gene3D G3DSA:2.40.420.20 269 350 2.5E-71 T 14-10-2018 YP_3761 08e561c72f0efad7eb16c1994d9dda99 360 SUPERFAMILY SSF111369 48 206 5.89E-24 T 14-10-2018 YP_3761 08e561c72f0efad7eb16c1994d9dda99 360 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 32 354 1.3E-99 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YP_3761 08e561c72f0efad7eb16c1994d9dda99 360 Gene3D G3DSA:2.40.30.170 44 268 2.5E-71 T 14-10-2018 YP_3761 08e561c72f0efad7eb16c1994d9dda99 360 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 248 3.7E-14 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YP_3761 08e561c72f0efad7eb16c1994d9dda99 360 Gene3D G3DSA:2.40.50.100 56 188 2.5E-71 T 14-10-2018 YP_2947 52bd9ce5c355a7463a7a680120343519 200 Gene3D G3DSA:1.10.472.60 37 165 1.2E-56 T 14-10-2018 YP_2947 52bd9ce5c355a7463a7a680120343519 200 SUPERFAMILY SSF52833 1 198 1.38E-24 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_2947 52bd9ce5c355a7463a7a680120343519 200 Gene3D G3DSA:3.40.30.10 2 192 1.2E-56 T 14-10-2018 YP_3850 847b84e4eb310257d68b700d26245a6f 130 Gene3D G3DSA:1.20.120.10 20 130 1.6E-41 T 14-10-2018 YP_3850 847b84e4eb310257d68b700d26245a6f 130 Pfam PF07361 Cytochrome b562 27 130 6.1E-32 T 14-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 YP_3850 847b84e4eb310257d68b700d26245a6f 130 PIRSF PIRSF000029 3 130 2.3E-60 T 14-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 YP_3850 847b84e4eb310257d68b700d26245a6f 130 SUPERFAMILY SSF47175 25 130 5.65E-36 T 14-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 YP_2932 410c860a7e7bdf0a6c1ea5dbae9af44d 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 264 5.0E-22 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2932 410c860a7e7bdf0a6c1ea5dbae9af44d 272 SUPERFAMILY SSF161098 6 267 1.96E-67 T 14-10-2018 IPR035906 MetI-like superfamily YP_2932 410c860a7e7bdf0a6c1ea5dbae9af44d 272 Gene3D G3DSA:1.10.3720.10 3 264 3.6E-66 T 14-10-2018 IPR035906 MetI-like superfamily YP_3572 429cd8bf104bf7c4c20d5cd6dfb6c7a9 380 SUPERFAMILY SSF140931 87 270 1.31E-31 T 14-10-2018 IPR036597 Fido-like domain superfamily YP_3572 429cd8bf104bf7c4c20d5cd6dfb6c7a9 380 Pfam PF02661 Fic/DOC family 110 210 5.9E-19 T 14-10-2018 IPR003812 Fido domain YP_3572 429cd8bf104bf7c4c20d5cd6dfb6c7a9 380 Gene3D G3DSA:1.10.3290.10 28 277 5.4E-51 T 14-10-2018 IPR036597 Fido-like domain superfamily YP_2786 6225b3090af3c6c842f91ce5c954307d 86 Gene3D G3DSA:2.30.30.400 10 86 3.0E-32 T 14-10-2018 IPR038626 Rof-like superfamily YP_2786 6225b3090af3c6c842f91ce5c954307d 86 Pfam PF07073 Modulator of Rho-dependent transcription termination (ROF) 9 83 2.2E-28 T 14-10-2018 IPR009778 Modulator of Rho-dependent transcription termination YP_2786 6225b3090af3c6c842f91ce5c954307d 86 SUPERFAMILY SSF101744 1 84 1.67E-30 T 14-10-2018 IPR023534 Rof/RNase P-like Reactome: R-HSA-6784531 YP_2976 06bfaeb3ed7aea6f00e9b63191e15060 228 Pfam PF06693 Protein of unknown function (DUF1190) 42 212 4.8E-55 T 14-10-2018 IPR009576 Biofilm formation YgiB YP_2976 06bfaeb3ed7aea6f00e9b63191e15060 228 Hamap MF_01188 UPF0441 protein YgiB [ygiB]. 2 228 48.582 T 14-10-2018 IPR009576 Biofilm formation YgiB YP_3356 72246bac984a55002ab8f7c2495e7f55 168 SUPERFAMILY SSF49785 31 156 7.8E-22 T 14-10-2018 IPR008979 Galactose-binding-like domain superfamily YP_3356 72246bac984a55002ab8f7c2495e7f55 168 Gene3D G3DSA:2.60.120.260 26 168 9.5E-37 T 14-10-2018 IPR008979 Galactose-binding-like domain superfamily YP_3356 72246bac984a55002ab8f7c2495e7f55 168 Pfam PF00754 F5/8 type C domain 36 154 6.1E-18 T 14-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain YP_3775 3c5c37fde0e5e5aeeece468d94594923 163 Pfam PF10696 Protein of unknown function (DUF2501) 82 160 2.8E-29 T 14-10-2018 IPR019637 Protein of unknown function DUF2501 YP_1067 a862626803372bb73257f79d21f75ffd 362 Pfam PF13481 AAA domain 25 197 4.7E-42 T 14-10-2018 YP_1067 a862626803372bb73257f79d21f75ffd 362 SUPERFAMILY SSF52540 33 239 5.63E-16 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1067 a862626803372bb73257f79d21f75ffd 362 Gene3D G3DSA:3.40.50.300 21 256 1.2E-37 T 14-10-2018 YP_1258 3cdda94c162ddb977b034f5eb64a1e9a 154 Pfam PF10767 Protein of unknown function (DUF2593) 11 148 1.5E-63 T 14-10-2018 IPR019703 Protein of unknown function DUF2593 YP_1964 61f0e6d8d42acb9d4f0e80748449b526 348 PIRSF PIRSF036407 1 347 1.6E-118 T 14-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 YP_1964 61f0e6d8d42acb9d4f0e80748449b526 348 Pfam PF02769 AIR synthase related protein, C-terminal domain 169 339 5.7E-28 T 14-10-2018 IPR010918 PurM-like, C-terminal domain YP_1964 61f0e6d8d42acb9d4f0e80748449b526 348 Gene3D G3DSA:3.30.1330.10 2 162 2.6E-47 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YP_1964 61f0e6d8d42acb9d4f0e80748449b526 348 SUPERFAMILY SSF55326 7 160 1.33E-40 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YP_1964 61f0e6d8d42acb9d4f0e80748449b526 348 TIGRFAM TIGR00476 selD: selenide, water dikinase 7 313 1.9E-136 T 14-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 YP_1964 61f0e6d8d42acb9d4f0e80748449b526 348 Gene3D G3DSA:3.90.650.10 164 347 1.1E-52 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YP_1964 61f0e6d8d42acb9d4f0e80748449b526 348 Hamap MF_00625 Selenide, water dikinase [selD]. 5 347 45.623 T 14-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 YP_1964 61f0e6d8d42acb9d4f0e80748449b526 348 Pfam PF00586 AIR synthase related protein, N-terminal domain 50 157 1.3E-18 T 14-10-2018 IPR016188 PurM-like, N-terminal domain YP_1964 61f0e6d8d42acb9d4f0e80748449b526 348 SUPERFAMILY SSF56042 164 339 1.94E-51 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YP_3002 d31e6c47f57d73ea89ce5638ea7825ed 256 Gene3D G3DSA:1.25.40.10 21 237 6.2E-14 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_3002 d31e6c47f57d73ea89ce5638ea7825ed 256 SUPERFAMILY SSF48452 55 225 5.06E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_0050 13f0a0c8e0ce38c84603441951afeb6d 222 Hamap MF_00018 UPF0758 protein YicR [yicR]. 2 222 52.775 T 14-10-2018 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily YP_0050 13f0a0c8e0ce38c84603441951afeb6d 222 TIGRFAM TIGR00608 radc: DNA repair protein RadC 10 222 3.7E-82 T 14-10-2018 IPR001405 Uncharacterised protein family UPF0758 YP_0050 13f0a0c8e0ce38c84603441951afeb6d 222 SUPERFAMILY SSF47781 16 83 5.34E-11 T 14-10-2018 IPR010994 RuvA domain 2-like YP_0050 13f0a0c8e0ce38c84603441951afeb6d 222 Pfam PF04002 RadC-like JAB domain 107 220 2.0E-43 T 14-10-2018 IPR025657 RadC-like JAB domain YP_0050 13f0a0c8e0ce38c84603441951afeb6d 222 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 171 176 - T 14-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site YP_0050 13f0a0c8e0ce38c84603441951afeb6d 222 Gene3D G3DSA:3.40.140.10 101 222 9.2E-44 T 14-10-2018 YP_2747 cf1fbb1b451a6fd9f14df8d34aa72268 249 SUPERFAMILY SSF48452 37 193 2.94E-18 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2747 cf1fbb1b451a6fd9f14df8d34aa72268 249 Gene3D G3DSA:1.25.40.10 32 247 2.0E-40 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2747 cf1fbb1b451a6fd9f14df8d34aa72268 249 Pfam PF13181 Tetratricopeptide repeat 36 66 1.2E-5 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YP_2747 cf1fbb1b451a6fd9f14df8d34aa72268 249 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 10 236 1.5E-81 T 14-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW YP_2747 cf1fbb1b451a6fd9f14df8d34aa72268 249 Pfam PF13431 Tetratricopeptide repeat 90 122 1.6E-5 T 14-10-2018 YP_2747 cf1fbb1b451a6fd9f14df8d34aa72268 249 SMART SM00028 33 66 0.001 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YP_2747 cf1fbb1b451a6fd9f14df8d34aa72268 249 SMART SM00028 67 100 14.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YP_2747 cf1fbb1b451a6fd9f14df8d34aa72268 249 SMART SM00028 137 170 7.7 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YP_0491 b86a7f3a413f01b980824643ef677b97 141 SUPERFAMILY SSF50203 19 130 1.23E-40 T 14-10-2018 IPR008992 Enterotoxin GO:0009405 YP_0491 b86a7f3a413f01b980824643ef677b97 141 Gene3D G3DSA:2.40.50.110 21 139 2.8E-47 T 14-10-2018 YP_1285 a7a6af250b213df7a436f78304305534 368 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 27 364 1.0E-126 T 14-10-2018 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 YP_1285 a7a6af250b213df7a436f78304305534 368 Pfam PF03601 Conserved hypothetical protein 698 29 344 1.5E-107 T 14-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 YP_1053 c5b6e7f909936f593a6b04b0516ab47f 94 Gene3D G3DSA:3.10.20.280 1 88 1.3E-33 T 14-10-2018 IPR037021 RnfH superfamily YP_1053 c5b6e7f909936f593a6b04b0516ab47f 94 SUPERFAMILY SSF54285 4 78 6.34E-26 T 14-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YP_1053 c5b6e7f909936f593a6b04b0516ab47f 94 Pfam PF03658 RnfH family Ubiquitin 4 86 3.0E-34 T 14-10-2018 IPR005346 RnfH protein YP_1053 c5b6e7f909936f593a6b04b0516ab47f 94 Hamap MF_00460 Protein RnfH [rnfH]. 4 94 25.914 T 14-10-2018 IPR005346 RnfH protein YP_pCD27 125e4f9b1a26f0d06c82fb9c8205f8b1 115 TIGRFAM TIGR02508 type_III_yscG: type III secretion protein, YscG family 1 115 3.4E-59 T 14-10-2018 IPR013348 Type III secretion system YscG GO:0009405 YP_pCD27 125e4f9b1a26f0d06c82fb9c8205f8b1 115 Pfam PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) 1 115 2.7E-60 T 14-10-2018 IPR013348 Type III secretion system YscG GO:0009405 YP_pCD27 125e4f9b1a26f0d06c82fb9c8205f8b1 115 Gene3D G3DSA:1.25.40.10 1 115 6.1E-60 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2326 1943185fbda7494b50a540868fa2e8ec 375 SUPERFAMILY SSF48452 71 167 3.4E-12 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2326 1943185fbda7494b50a540868fa2e8ec 375 Pfam PF02698 DUF218 domain 204 320 1.3E-21 T 14-10-2018 IPR003848 Domain of unknown function DUF218 YP_2326 1943185fbda7494b50a540868fa2e8ec 375 Gene3D G3DSA:1.25.40.10 29 243 3.4E-9 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YP_2322 aa6b1ae1d02cee1bbd612d5ded44c0dc 295 SUPERFAMILY SSF103481 187 281 9.02E-7 T 14-10-2018 YP_2322 aa6b1ae1d02cee1bbd612d5ded44c0dc 295 Pfam PF00892 EamA-like transporter family 150 279 1.1E-16 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_1854 8d2ac3353a5971e1d5693ddc4dd9be52 276 Gene3D G3DSA:3.40.50.1820 29 268 5.8E-25 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1854 8d2ac3353a5971e1d5693ddc4dd9be52 276 SUPERFAMILY SSF53474 57 266 8.47E-28 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1854 8d2ac3353a5971e1d5693ddc4dd9be52 276 Pfam PF07859 alpha/beta hydrolase fold 73 155 1.2E-8 T 14-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 YP_1854 8d2ac3353a5971e1d5693ddc4dd9be52 276 Pfam PF07859 alpha/beta hydrolase fold 161 246 2.7E-10 T 14-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 YP_1844 2ff6a33547cf062e9a94c35514db71f4 357 SUPERFAMILY SSF53474 56 353 8.7E-30 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1844 2ff6a33547cf062e9a94c35514db71f4 357 Pfam PF12697 Alpha/beta hydrolase family 84 308 1.2E-8 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YP_1844 2ff6a33547cf062e9a94c35514db71f4 357 Gene3D G3DSA:3.40.50.1820 26 357 2.6E-108 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1649 5a371f99207a159f0967ac6749e6ddf7 673 SUPERFAMILY SSF56935 19 672 2.43E-94 T 14-10-2018 YP_1649 5a371f99207a159f0967ac6749e6ddf7 673 Gene3D G3DSA:2.40.170.20 35 673 4.0E-260 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_1649 5a371f99207a159f0967ac6749e6ddf7 673 Pfam PF00593 TonB dependent receptor 223 669 3.4E-48 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YP_1649 5a371f99207a159f0967ac6749e6ddf7 673 Pfam PF07715 TonB-dependent Receptor Plug Domain 48 149 1.7E-14 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain YP_1649 5a371f99207a159f0967ac6749e6ddf7 673 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 50 672 1.2E-149 T 14-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 YP_3266 e60d125548a3a87651f89039f1fb8ed9 189 Pfam PF09335 SNARE associated Golgi protein 54 177 7.3E-13 T 14-10-2018 IPR032816 SNARE associated Golgi protein YP_3016 dff1594048198c9dbb836ce58f4b7d9a 192 Pfam PF11153 Protein of unknown function (DUF2931) 12 191 1.1E-38 T 14-10-2018 IPR021326 Protein of unknown function DUF2931 YP_3414 fae419f42a2b1c31c1d4c6ddc8fd6fa4 195 Gene3D G3DSA:2.60.40.3700 34 194 2.2E-64 T 14-10-2018 YP_2085 216fecabe9a72f0b28c00148fb6e3ef6 250 Gene3D G3DSA:2.60.120.10 43 164 6.4E-48 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_2085 216fecabe9a72f0b28c00148fb6e3ef6 250 SMART SM00100 30 151 3.1E-21 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain YP_2085 216fecabe9a72f0b28c00148fb6e3ef6 250 ProSitePatterns PS00042 Crp-type HTH domain signature. 195 218 - T 14-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 YP_2085 216fecabe9a72f0b28c00148fb6e3ef6 250 SUPERFAMILY SSF46785 165 245 3.79E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_2085 216fecabe9a72f0b28c00148fb6e3ef6 250 Pfam PF13545 Crp-like helix-turn-helix domain 168 242 2.4E-16 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 YP_2085 216fecabe9a72f0b28c00148fb6e3ef6 250 SMART SM00419 187 235 1.7E-13 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 YP_2085 216fecabe9a72f0b28c00148fb6e3ef6 250 Pfam PF00027 Cyclic nucleotide-binding domain 51 132 4.0E-15 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain YP_2085 216fecabe9a72f0b28c00148fb6e3ef6 250 Gene3D G3DSA:1.10.10.10 165 247 2.6E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2085 216fecabe9a72f0b28c00148fb6e3ef6 250 SUPERFAMILY SSF51206 23 162 4.06E-31 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like YP_2085 216fecabe9a72f0b28c00148fb6e3ef6 250 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 209 224 8.8E-12 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 YP_2085 216fecabe9a72f0b28c00148fb6e3ef6 250 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 193 209 8.8E-12 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 YP_0769 5bbf433718a947e176c7af12963177df 510 TIGRFAM TIGR00901 2A0125: AmpG-like permease 43 381 4.5E-117 T 14-10-2018 YP_0769 5bbf433718a947e176c7af12963177df 510 SUPERFAMILY SSF103473 23 425 1.44E-45 T 14-10-2018 IPR036259 MFS transporter superfamily YP_0769 5bbf433718a947e176c7af12963177df 510 Pfam PF07690 Major Facilitator Superfamily 36 384 3.1E-31 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_0769 5bbf433718a947e176c7af12963177df 510 Gene3D G3DSA:1.20.1250.20 22 215 3.1E-17 T 14-10-2018 YP_0769 5bbf433718a947e176c7af12963177df 510 Gene3D G3DSA:1.20.1250.20 231 436 2.4E-14 T 14-10-2018 YP_0722 86d201e8eb4b19d1b44654d247835418 95 Gene3D G3DSA:2.60.120.10 1 94 9.3E-32 T 14-10-2018 IPR014710 RmlC-like jelly roll fold YP_0722 86d201e8eb4b19d1b44654d247835418 95 Pfam PF06865 Protein of unknown function (DUF1255) 3 93 1.6E-32 T 14-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 YP_0722 86d201e8eb4b19d1b44654d247835418 95 SUPERFAMILY SSF51182 1 94 1.53E-31 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily YP_0722 86d201e8eb4b19d1b44654d247835418 95 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 1 94 24.979 T 14-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 YP_0045 f240eaba6b87a5a28847c019df81a221 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 14-10-2018 IPR018336 Ribonuclease PH, conserved site YP_0045 f240eaba6b87a5a28847c019df81a221 238 SUPERFAMILY SSF54211 1 181 6.58E-44 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0045 f240eaba6b87a5a28847c019df81a221 238 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 45.269 T 14-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 YP_0045 f240eaba6b87a5a28847c019df81a221 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 9.7E-111 T 14-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 YP_0045 f240eaba6b87a5a28847c019df81a221 238 Pfam PF03725 3' exoribonuclease family, domain 2 158 222 1.6E-10 T 14-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YP_0045 f240eaba6b87a5a28847c019df81a221 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 2.4E-24 T 14-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YP_0045 f240eaba6b87a5a28847c019df81a221 238 SUPERFAMILY SSF55666 153 237 1.27E-25 T 14-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YP_0045 f240eaba6b87a5a28847c019df81a221 238 Gene3D G3DSA:3.30.230.70 10 238 6.0E-65 T 14-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YP_2600 b65f67732a14ab66e534f02ce3b6869d 411 Gene3D G3DSA:3.90.1150.10 294 391 2.8E-134 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_2600 b65f67732a14ab66e534f02ce3b6869d 411 SUPERFAMILY SSF53383 10 394 2.18E-107 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_2600 b65f67732a14ab66e534f02ce3b6869d 411 Pfam PF00155 Aminotransferase class I and II 37 387 5.9E-57 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YP_2600 b65f67732a14ab66e534f02ce3b6869d 411 Gene3D G3DSA:3.40.640.10 70 293 2.8E-134 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_1378 93dfabd59c9309ae1cd9af84bad362c7 150 SUPERFAMILY SSF160719 33 120 8.11E-17 T 14-10-2018 YP_1378 93dfabd59c9309ae1cd9af84bad362c7 150 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 7 116 6.8E-24 T 14-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein YP_1378 93dfabd59c9309ae1cd9af84bad362c7 150 Pfam PF04965 Gene 25-like lysozyme 35 116 3.1E-9 T 14-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD YP_2820 95ded84fba72e736f936e074e1bb7057 368 SUPERFAMILY SSF53335 185 289 1.77E-11 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_2820 95ded84fba72e736f936e074e1bb7057 368 Pfam PF01728 FtsJ-like methyltransferase 187 280 3.2E-7 T 14-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 YP_2820 95ded84fba72e736f936e074e1bb7057 368 Gene3D G3DSA:3.30.2300.20 81 176 2.3E-38 T 14-10-2018 YP_2820 95ded84fba72e736f936e074e1bb7057 368 Gene3D G3DSA:3.30.70.2810 1 80 1.2E-33 T 14-10-2018 YP_2820 95ded84fba72e736f936e074e1bb7057 368 Gene3D G3DSA:3.40.50.150 177 358 1.7E-57 T 14-10-2018 YP_2820 95ded84fba72e736f936e074e1bb7057 368 PIRSF PIRSF028774 2 361 7.2E-194 T 14-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 YP_2820 95ded84fba72e736f936e074e1bb7057 368 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 2 356 85.448 T 14-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 YP_1720 d9171a09f969b5bdb426911a414e9370 329 SMART SM00972 271 326 3.5E-12 T 14-10-2018 IPR007893 Spore coat protein U YP_1720 d9171a09f969b5bdb426911a414e9370 329 SMART SM00972 104 172 1.1E-11 T 14-10-2018 IPR007893 Spore coat protein U YP_1720 d9171a09f969b5bdb426911a414e9370 329 Pfam PF05229 Spore Coat Protein U domain 37 171 1.3E-13 T 14-10-2018 IPR007893 Spore coat protein U YP_1720 d9171a09f969b5bdb426911a414e9370 329 Pfam PF05229 Spore Coat Protein U domain 196 325 2.3E-25 T 14-10-2018 IPR007893 Spore coat protein U YP_2026 b2d540da210fe3bfc502c1533725f74f 245 SMART SM00934 16 237 3.4E-102 T 14-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YP_2026 b2d540da210fe3bfc502c1533725f74f 245 SUPERFAMILY SSF51366 14 240 1.36E-80 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 YP_2026 b2d540da210fe3bfc502c1533725f74f 245 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 68 81 - T 14-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YP_2026 b2d540da210fe3bfc502c1533725f74f 245 Gene3D G3DSA:3.20.20.70 2 245 9.5E-88 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_2026 b2d540da210fe3bfc502c1533725f74f 245 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 18 237 3.2E-56 T 14-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YP_2026 b2d540da210fe3bfc502c1533725f74f 245 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 14 242 39.676 T 14-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YP_2026 b2d540da210fe3bfc502c1533725f74f 245 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 15 237 4.7E-53 T 14-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YP_2107 b3c2a8a961abc48fa6c59a3bad968f1f 107 SUPERFAMILY SSF47413 29 102 2.28E-14 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YP_2107 b3c2a8a961abc48fa6c59a3bad968f1f 107 Gene3D G3DSA:1.10.260.40 21 99 5.3E-16 T 14-10-2018 YP_2107 b3c2a8a961abc48fa6c59a3bad968f1f 107 Pfam PF01381 Helix-turn-helix 42 93 6.2E-15 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_2107 b3c2a8a961abc48fa6c59a3bad968f1f 107 SMART SM00530 41 96 2.9E-13 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YP_1757 9d9929e228e8457d7b7e7397f0fc574b 416 Pfam PF12704 MacB-like periplasmic core domain 29 240 3.3E-15 T 14-10-2018 IPR025857 MacB-like periplasmic core domain YP_1757 9d9929e228e8457d7b7e7397f0fc574b 416 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 6 415 5.6E-159 T 14-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 YP_1757 9d9929e228e8457d7b7e7397f0fc574b 416 TIGRFAM TIGR02213 lolE_release: lipoprotein releasing system, transmembrane protein LolE 7 416 1.6E-212 T 14-10-2018 IPR011926 Lipoprotein-releasing system transmembrane protein LolC/E, gammaproteobacteria type GO:0016021|GO:0042953|GO:0042954|GO:0044874 YP_1757 9d9929e228e8457d7b7e7397f0fc574b 416 Pfam PF02687 FtsX-like permease family 303 409 1.9E-11 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 YP_pMT125 8807ee3f793062e106471332cc32d3c7 354 Pfam PF01548 Transposase 20 163 1.7E-17 T 14-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 YP_pMT125 8807ee3f793062e106471332cc32d3c7 354 Pfam PF02371 Transposase IS116/IS110/IS902 family 226 306 7.1E-27 T 14-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 YP_3086 6a94a448ad899464e78aad4fa2cc583f 575 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 7 572 0.0 T 14-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 YP_3086 6a94a448ad899464e78aad4fa2cc583f 575 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 1 570 43.925 T 14-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 YP_3086 6a94a448ad899464e78aad4fa2cc583f 575 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 9 566 1.1E-253 T 14-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 YP_3086 6a94a448ad899464e78aad4fa2cc583f 575 PIRSF PIRSF000719 1 575 1.1E-304 T 14-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 YP_1316 264872dfba8745ba53f942d3127ce1a8 602 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 99 502 8.7E-77 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain YP_1316 264872dfba8745ba53f942d3127ce1a8 602 Gene3D G3DSA:3.40.190.10 29 588 6.8E-224 T 14-10-2018 YP_1316 264872dfba8745ba53f942d3127ce1a8 602 SUPERFAMILY SSF53850 50 591 2.63E-116 T 14-10-2018 YP_1316 264872dfba8745ba53f942d3127ce1a8 602 PIRSF PIRSF002741 5 593 3.9E-147 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 YP_1316 264872dfba8745ba53f942d3127ce1a8 602 Gene3D G3DSA:3.10.105.10 310 568 6.8E-224 T 14-10-2018 YP_1968 425aceea2220c65276c93fbba7dfaefd 271 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 7 262 9.9E-24 T 14-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase YP_1968 425aceea2220c65276c93fbba7dfaefd 271 SUPERFAMILY SSF56219 4 271 1.96E-88 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YP_1968 425aceea2220c65276c93fbba7dfaefd 271 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 4 269 6.8E-105 T 14-10-2018 YP_1968 425aceea2220c65276c93fbba7dfaefd 271 Gene3D G3DSA:3.60.10.10 4 270 1.3E-82 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YP_1968 425aceea2220c65276c93fbba7dfaefd 271 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 30 39 - T 14-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 YP_1968 425aceea2220c65276c93fbba7dfaefd 271 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 4 269 2.0E-89 T 14-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 YP_1968 425aceea2220c65276c93fbba7dfaefd 271 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 226 237 - T 14-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 YP_2892 97f172b704c1c36e3adbef68e31000c3 160 Pfam PF06476 Protein of unknown function (DUF1090) 47 154 7.6E-38 T 14-10-2018 IPR009468 Protein of unknown function DUF1090 YP_3120 13cd391c6e03d507b93842c23fc0ffcc 171 SUPERFAMILY SSF46689 57 158 5.55E-14 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3120 13cd391c6e03d507b93842c23fc0ffcc 171 SUPERFAMILY SSF48295 2 53 8.89E-12 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 YP_3120 13cd391c6e03d507b93842c23fc0ffcc 171 Pfam PF13518 Helix-turn-helix domain 8 53 4.3E-9 T 14-10-2018 YP_3120 13cd391c6e03d507b93842c23fc0ffcc 171 Pfam PF13518 Helix-turn-helix domain 63 115 7.2E-12 T 14-10-2018 YP_0747 ad04a9c4e9eb6d14471c207a0dc82de9 149 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 4.5E-75 T 14-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 YP_0747 ad04a9c4e9eb6d14471c207a0dc82de9 149 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 149 88.723 T 14-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 YP_0747 ad04a9c4e9eb6d14471c207a0dc82de9 149 Pfam PF03477 ATP cone domain 50 136 5.9E-16 T 14-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 YP_2643 64744f58b24acc8042f5622fa2d8459a 156 Gene3D G3DSA:2.60.120.370 1 154 1.4E-44 T 14-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily YP_2643 64744f58b24acc8042f5622fa2d8459a 156 SUPERFAMILY SSF51197 1 154 8.79E-47 T 14-10-2018 YP_2643 64744f58b24acc8042f5622fa2d8459a 156 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 153 1.5E-46 T 14-10-2018 IPR004375 YhcH/YjgK/YiaL family YP_2643 64744f58b24acc8042f5622fa2d8459a 156 Pfam PF04074 Domain of unknown function (DUF386) 1 150 1.9E-41 T 14-10-2018 IPR004375 YhcH/YjgK/YiaL family YP_2857 9fc8efa7af9961a95e193f9a662cbd88 295 Pfam PF00753 Metallo-beta-lactamase superfamily 44 228 4.5E-9 T 14-10-2018 IPR001279 Metallo-beta-lactamase YP_2857 9fc8efa7af9961a95e193f9a662cbd88 295 Gene3D G3DSA:3.60.15.10 25 262 8.0E-29 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_2857 9fc8efa7af9961a95e193f9a662cbd88 295 SUPERFAMILY SSF56281 26 251 6.09E-43 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_2857 9fc8efa7af9961a95e193f9a662cbd88 295 SMART SM00849 43 228 3.1E-21 T 14-10-2018 IPR001279 Metallo-beta-lactamase YP_0612 1d20e8b62c73895c4efcfc64a8326f61 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 291 2.2E-11 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_0612 1d20e8b62c73895c4efcfc64a8326f61 294 Gene3D G3DSA:1.10.3720.10 51 293 3.5E-68 T 14-10-2018 IPR035906 MetI-like superfamily YP_0612 1d20e8b62c73895c4efcfc64a8326f61 294 SUPERFAMILY SSF161098 55 282 8.24E-58 T 14-10-2018 IPR035906 MetI-like superfamily YP_1995 7a59cf57c1a553702523c5e5c7e4156d 180 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 176 19.59 T 14-10-2018 IPR006008 Intracellular septation protein A GO:0016021 YP_1995 7a59cf57c1a553702523c5e5c7e4156d 180 Pfam PF04279 Intracellular septation protein A 1 175 1.8E-71 T 14-10-2018 IPR006008 Intracellular septation protein A GO:0016021 YP_1995 7a59cf57c1a553702523c5e5c7e4156d 180 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 178 1.9E-71 T 14-10-2018 IPR006008 Intracellular septation protein A GO:0016021 YP_3526 fd4a881e9bffed600f03888049eee35b 517 Pfam PF00884 Sulfatase 44 396 1.2E-54 T 14-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 YP_3526 fd4a881e9bffed600f03888049eee35b 517 Gene3D G3DSA:3.40.720.10 44 415 4.7E-101 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YP_3526 fd4a881e9bffed600f03888049eee35b 517 SUPERFAMILY SSF53649 42 505 7.98E-97 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YP_3526 fd4a881e9bffed600f03888049eee35b 517 Gene3D G3DSA:3.30.1120.10 424 511 3.0E-23 T 14-10-2018 YP_1498 4039277dcd145d3964cef0d475e612bf 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 270 3.5E-12 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1498 4039277dcd145d3964cef0d475e612bf 275 SUPERFAMILY SSF161098 11 275 5.23E-69 T 14-10-2018 IPR035906 MetI-like superfamily YP_1498 4039277dcd145d3964cef0d475e612bf 275 Gene3D G3DSA:1.10.3720.10 8 267 3.8E-60 T 14-10-2018 IPR035906 MetI-like superfamily YP_2332 42f2c3f0345699187100f46055d36477 86 Gene3D G3DSA:3.30.1660.10 22 86 9.6E-18 T 14-10-2018 IPR025543 Dodecin-like YP_2332 42f2c3f0345699187100f46055d36477 86 Pfam PF07338 Protein of unknown function (DUF1471) 34 86 5.0E-19 T 14-10-2018 IPR010854 Domain of unknown function DUF1471 YP_2332 42f2c3f0345699187100f46055d36477 86 SUPERFAMILY SSF159871 3 86 3.4E-26 T 14-10-2018 IPR036275 YdgH-like superfamily YP_3255 61346d1e2643c3da3d18fac8b0e88ee6 281 Gene3D G3DSA:1.10.3720.10 2 274 1.3E-53 T 14-10-2018 IPR035906 MetI-like superfamily YP_3255 61346d1e2643c3da3d18fac8b0e88ee6 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 276 3.1E-21 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_3255 61346d1e2643c3da3d18fac8b0e88ee6 281 SUPERFAMILY SSF161098 4 277 1.15E-58 T 14-10-2018 IPR035906 MetI-like superfamily YP_2263 7557a88f1e2dba552598c9dbff766cb0 1221 Gene3D G3DSA:2.40.50.140 32 125 7.8E-34 T 14-10-2018 YP_2263 7557a88f1e2dba552598c9dbff766cb0 1221 SUPERFAMILY SSF50249 40 124 8.88E-21 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold YP_2263 7557a88f1e2dba552598c9dbff766cb0 1221 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 425 1.1E-169 T 14-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 YP_2263 7557a88f1e2dba552598c9dbff766cb0 1221 Pfam PF00575 S1 RNA binding domain 36 118 1.5E-16 T 14-10-2018 IPR003029 S1 domain GO:0003676 YP_2263 7557a88f1e2dba552598c9dbff766cb0 1221 Hamap MF_00970 Ribonuclease E [rne]. 1 1207 41.615 T 14-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 YP_2263 7557a88f1e2dba552598c9dbff766cb0 1221 SMART SM00316 37 119 8.7E-13 T 14-10-2018 IPR022967 RNA-binding domain, S1 YP_2263 7557a88f1e2dba552598c9dbff766cb0 1221 Gene3D G3DSA:3.40.1260.20 401 510 4.1E-42 T 14-10-2018 YP_2263 7557a88f1e2dba552598c9dbff766cb0 1221 Pfam PF12111 Polyribonucleotide phosphorylase C terminal 1183 1218 7.0E-15 T 14-10-2018 IPR021968 Polyribonucleotide phosphorylase C-terminal YP_2263 7557a88f1e2dba552598c9dbff766cb0 1221 Pfam PF10150 Ribonuclease E/G family 121 391 7.7E-92 T 14-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 YP_0912 51bebf772d97dfa8918fee2551b926ac 342 Pfam PF12706 Beta-lactamase superfamily domain 103 299 3.0E-41 T 14-10-2018 IPR001279 Metallo-beta-lactamase YP_0912 51bebf772d97dfa8918fee2551b926ac 342 Gene3D G3DSA:3.60.15.10 60 342 1.8E-85 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_0912 51bebf772d97dfa8918fee2551b926ac 342 PIRSF PIRSF038896 2 342 1.3E-99 T 14-10-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 YP_0912 51bebf772d97dfa8918fee2551b926ac 342 SUPERFAMILY SSF56281 85 305 3.14E-37 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_2828 08b2a08889f14a29d17f0b4b5fb963b1 449 SUPERFAMILY SSF55729 296 419 2.79E-19 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_2828 08b2a08889f14a29d17f0b4b5fb963b1 449 PIRSF PIRSF000423 1 436 1.9E-206 T 14-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 YP_2828 08b2a08889f14a29d17f0b4b5fb963b1 449 Pfam PF00696 Amino acid kinase family 25 266 1.9E-31 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 YP_2828 08b2a08889f14a29d17f0b4b5fb963b1 449 SUPERFAMILY SSF53633 4 290 4.47E-70 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YP_2828 08b2a08889f14a29d17f0b4b5fb963b1 449 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 444 231.663 T 14-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 YP_2828 08b2a08889f14a29d17f0b4b5fb963b1 449 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 8 431 1.7E-196 T 14-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 YP_2828 08b2a08889f14a29d17f0b4b5fb963b1 449 Gene3D G3DSA:3.40.1160.10 7 292 7.5E-86 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YP_2828 08b2a08889f14a29d17f0b4b5fb963b1 449 Pfam PF00583 Acetyltransferase (GNAT) family 335 412 1.9E-7 T 14-10-2018 IPR000182 GNAT domain YP_2828 08b2a08889f14a29d17f0b4b5fb963b1 449 Gene3D G3DSA:3.40.630.30 293 436 2.7E-36 T 14-10-2018 YP_1881 b8b12049734f7e950c0c0409739d07e3 186 Gene3D G3DSA:1.10.3480.10 1 183 7.8E-33 T 14-10-2018 YP_1881 b8b12049734f7e950c0c0409739d07e3 186 PIRSF PIRSF004690 1 184 3.8E-62 T 14-10-2018 IPR026269 Tat proofreading chaperone DmsD-type YP_1881 b8b12049734f7e950c0c0409739d07e3 186 Pfam PF02613 Nitrate reductase delta subunit 37 147 2.7E-14 T 14-10-2018 IPR020945 DMSO/Nitrate reductase chaperone YP_1881 b8b12049734f7e950c0c0409739d07e3 186 SUPERFAMILY SSF89155 2 180 1.11E-47 T 14-10-2018 IPR036411 TorD-like superfamily YP_2967 a868bf7e31aff251648b6f4f3cb87080 435 Pfam PF01928 CYTH domain 4 196 3.7E-30 T 14-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 YP_2967 a868bf7e31aff251648b6f4f3cb87080 435 Gene3D G3DSA:2.40.320.10 1 200 1.1E-38 T 14-10-2018 YP_2967 a868bf7e31aff251648b6f4f3cb87080 435 SUPERFAMILY SSF55154 1 218 1.8E-55 T 14-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 YP_2967 a868bf7e31aff251648b6f4f3cb87080 435 SMART SM01118 2 202 9.8E-42 T 14-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 YP_0876 794048a438b64884df71657ae720eef2 583 Gene3D G3DSA:3.30.230.10 323 564 1.8E-96 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YP_0876 794048a438b64884df71657ae720eef2 583 Gene3D G3DSA:3.40.50.300 111 235 4.5E-12 T 14-10-2018 YP_0876 794048a438b64884df71657ae720eef2 583 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 460 479 9.5E-9 T 14-10-2018 YP_0876 794048a438b64884df71657ae720eef2 583 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 430 449 9.5E-9 T 14-10-2018 YP_0876 794048a438b64884df71657ae720eef2 583 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 490 508 9.5E-9 T 14-10-2018 YP_0876 794048a438b64884df71657ae720eef2 583 SUPERFAMILY SSF54211 347 538 3.72E-35 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YP_0876 794048a438b64884df71657ae720eef2 583 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 433 534 3.8E-10 T 14-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 YP_0876 794048a438b64884df71657ae720eef2 583 Pfam PF13654 AAA domain 132 321 2.6E-20 T 14-10-2018 YP_3941 518880bf3343ab6fb61546ad70cfb4b5 456 Pfam PF03527 RHS protein 216 252 9.3E-18 T 14-10-2018 IPR001826 RHS protein YP_3941 518880bf3343ab6fb61546ad70cfb4b5 456 Gene3D G3DSA:2.180.10.10 14 326 2.5E-43 T 14-10-2018 YP_3941 518880bf3343ab6fb61546ad70cfb4b5 456 Pfam PF14414 A nuclease of the HNH/ENDO VII superfamily with conserved WHH 375 421 1.3E-15 T 14-10-2018 IPR032869 WHH domain-containing protein YP_3941 518880bf3343ab6fb61546ad70cfb4b5 456 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 243 326 2.3E-27 T 14-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 YP_0415 f59a9363c77ee2d70457088c23baee9f 82 Pfam PF06287 Protein of unknown function (DUF1039) 17 81 6.0E-30 T 14-10-2018 IPR010437 Type III secretion system SsaH YP_0415 f59a9363c77ee2d70457088c23baee9f 82 TIGRFAM TIGR02498 type_III_ssaH: type III secretion system protein, SsaH family 4 82 4.5E-37 T 14-10-2018 IPR010437 Type III secretion system SsaH YP_1935 bdc37a5d0965e6b0b66458abf78e6b02 129 Pfam PF06530 Phage antitermination protein Q 2 124 1.7E-29 T 14-10-2018 IPR010534 Bacteriophage 933W, GpQ GO:0003677|GO:0060567 YP_1246 ae3d7ca3da9245f7c0f7adde5edb09d8 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 4 79 8.0E-12 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YP_1246 ae3d7ca3da9245f7c0f7adde5edb09d8 238 Gene3D G3DSA:1.10.3720.10 2 233 3.5E-46 T 14-10-2018 IPR035906 MetI-like superfamily YP_1246 ae3d7ca3da9245f7c0f7adde5edb09d8 238 SUPERFAMILY SSF161098 7 216 1.44E-35 T 14-10-2018 IPR035906 MetI-like superfamily YP_1246 ae3d7ca3da9245f7c0f7adde5edb09d8 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 25 231 5.9E-15 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2009 0b5a91ad9f2f3aeda04b0f7b15fd1c97 206 Gene3D G3DSA:3.90.870.10 1 206 2.8E-71 T 14-10-2018 YP_2009 0b5a91ad9f2f3aeda04b0f7b15fd1c97 206 SUPERFAMILY SSF55821 1 203 1.86E-66 T 14-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YP_2009 0b5a91ad9f2f3aeda04b0f7b15fd1c97 206 Pfam PF01300 Telomere recombination 23 198 8.2E-47 T 14-10-2018 IPR006070 YrdC-like domain GO:0003725 YP_2009 0b5a91ad9f2f3aeda04b0f7b15fd1c97 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 201 5.8E-74 T 14-10-2018 IPR006070 YrdC-like domain GO:0003725 YP_1125 b1bbe9138fba663d9657e867b26a9061 64 Gene3D G3DSA:1.20.58.250 12 64 1.9E-7 T 14-10-2018 IPR036745 DNA polymerase III-theta superfamily GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YP_1125 b1bbe9138fba663d9657e867b26a9061 64 Hamap MF_00525 Surface composition regulator [glgS]. 5 64 19.062 T 14-10-2018 IPR015065 Surface composition regulator YP_1125 b1bbe9138fba663d9657e867b26a9061 64 Pfam PF08971 Glycogen synthesis protein 11 58 5.2E-10 T 14-10-2018 IPR015065 Surface composition regulator YP_1125 b1bbe9138fba663d9657e867b26a9061 64 SUPERFAMILY SSF46575 15 60 4.19E-8 T 14-10-2018 YP_1619 fd6cca415565595131f78e5e75b11a49 85 ProDom PD026807 UPF0181 YOAH YPTB1650 VV20310 VPA0916 VCA0569 YPO1774/Y2534/YP1619 PLU2693 VVA0806 PM0480 1 46 6.0E-19 T 14-10-2018 IPR005371 Uncharacterised protein family UPF0181 YP_1619 fd6cca415565595131f78e5e75b11a49 85 Pfam PF03701 Uncharacterised protein family (UPF0181) 1 48 4.0E-27 T 14-10-2018 IPR005371 Uncharacterised protein family UPF0181 YP_1619 fd6cca415565595131f78e5e75b11a49 85 Hamap MF_00507 UPF0181 protein YoaH [yoaH]. 1 58 20.122 T 14-10-2018 IPR005371 Uncharacterised protein family UPF0181 YP_2014 2b25ad630e90fa094f10b62eae337fe3 83 Pfam PF10692 Protein of unknown function (DUF2498) 5 81 2.6E-44 T 14-10-2018 IPR019633 Protein of unknown function DUF2498 YP_2014 2b25ad630e90fa094f10b62eae337fe3 83 Gene3D G3DSA:1.10.1900.30 9 77 1.6E-38 T 14-10-2018 IPR038191 YciN superfamily YP_3148 1021dc1677af3d1df977afe9ee2bfb49 85 Pfam PF13710 ACT domain 13 73 3.2E-27 T 14-10-2018 YP_3148 1021dc1677af3d1df977afe9ee2bfb49 85 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 2 81 0.009 T 14-10-2018 YP_3148 1021dc1677af3d1df977afe9ee2bfb49 85 Gene3D G3DSA:3.30.70.260 1 85 2.0E-8 T 14-10-2018 YP_3148 1021dc1677af3d1df977afe9ee2bfb49 85 SUPERFAMILY SSF55021 3 76 2.25E-13 T 14-10-2018 YP_3079 addd5a07e6a65e62b6e165a69db113cc 135 Pfam PF06146 Phosphate-starvation-inducible E 60 122 6.7E-16 T 14-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like YP_3079 addd5a07e6a65e62b6e165a69db113cc 135 PIRSF PIRSF029598 1 135 2.0E-48 T 14-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 YP_3079 addd5a07e6a65e62b6e165a69db113cc 135 Hamap MF_01048 Protein PsiE [psiE]. 1 135 25.941 T 14-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 YP_1646 d10f42c572767e6f043ea5446222b902 93 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 37 86 3.2E-25 T 14-10-2018 IPR010260 DNA-binding transcriptional activator AlpA YP_1646 d10f42c572767e6f043ea5446222b902 93 Gene3D G3DSA:1.10.238.160 37 93 9.5E-7 T 14-10-2018 YP_1999 d3f07bb481b32594524eb61e81007fe3 215 Pfam PF03922 OmpW family 27 215 4.4E-65 T 14-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 YP_1999 d3f07bb481b32594524eb61e81007fe3 215 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 207 215 - T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_1999 d3f07bb481b32594524eb61e81007fe3 215 Gene3D G3DSA:2.40.160.20 26 215 1.3E-76 T 14-10-2018 YP_1999 d3f07bb481b32594524eb61e81007fe3 215 SUPERFAMILY SSF56925 27 215 3.92E-29 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_0375 20a97367813e7579602dc75b056dcb7b 474 Pfam PF02952 L-fucose isomerase, C-terminal domain 343 471 2.7E-38 T 14-10-2018 IPR015888 L-fucose isomerase, C-terminal GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 YP_0375 20a97367813e7579602dc75b056dcb7b 474 SUPERFAMILY SSF53743 7 325 1.83E-64 T 14-10-2018 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily GO:0005737|GO:0005996|GO:0016861 YP_pCD55 b52e7a12769e926a3a54c123ee5e93b0 306 Pfam PF05844 YopD protein 13 306 5.4E-155 T 14-10-2018 IPR008898 YopD-like YP_3458 f8372853dcc6f6b17d1cc154aa48263e 89 Pfam PF03811 InsA N-terminal domain 3 37 5.6E-17 T 14-10-2018 IPR003220 InsA N-terminal domain GO:0006313 YP_3458 f8372853dcc6f6b17d1cc154aa48263e 89 Pfam PF12759 InsA C-terminal domain 44 88 1.2E-23 T 14-10-2018 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YP_0369 ac242ad0e7ba64e2267deacfc80e372a 205 SUPERFAMILY SSF141318 49 202 1.31E-43 T 14-10-2018 IPR036215 TM0957-like superfamily YP_0369 ac242ad0e7ba64e2267deacfc80e372a 205 Pfam PF10054 Predicted periplasmic lipoprotein (DUF2291) 13 200 2.3E-35 T 14-10-2018 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein YP_0369 ac242ad0e7ba64e2267deacfc80e372a 205 PIRSF PIRSF033535 1 204 1.2E-83 T 14-10-2018 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein YP_2421 6dfb33dc69b43fec27decf3b68476fd4 258 PRINTS PR01805 VacJ lipoprotein signature 36 49 1.0E-32 T 14-10-2018 IPR007428 MlaA lipoprotein GO:0016020 YP_2421 6dfb33dc69b43fec27decf3b68476fd4 258 PRINTS PR01805 VacJ lipoprotein signature 54 70 1.0E-32 T 14-10-2018 IPR007428 MlaA lipoprotein GO:0016020 YP_2421 6dfb33dc69b43fec27decf3b68476fd4 258 PRINTS PR01805 VacJ lipoprotein signature 105 122 1.0E-32 T 14-10-2018 IPR007428 MlaA lipoprotein GO:0016020 YP_2421 6dfb33dc69b43fec27decf3b68476fd4 258 PRINTS PR01805 VacJ lipoprotein signature 144 161 1.0E-32 T 14-10-2018 IPR007428 MlaA lipoprotein GO:0016020 YP_2421 6dfb33dc69b43fec27decf3b68476fd4 258 Pfam PF04333 MlaA lipoprotein 35 228 1.1E-65 T 14-10-2018 IPR007428 MlaA lipoprotein GO:0016020 YP_3645 0fcd07e57077e5d4d9d87ec57f064c24 601 Pfam PF00501 AMP-binding enzyme 15 470 4.9E-90 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YP_3645 0fcd07e57077e5d4d9d87ec57f064c24 601 ProSitePatterns PS00455 Putative AMP-binding domain signature. 187 198 - T 14-10-2018 IPR020845 AMP-binding, conserved site YP_3645 0fcd07e57077e5d4d9d87ec57f064c24 601 Gene3D G3DSA:3.40.50.12780 3 317 2.6E-53 T 14-10-2018 YP_3645 0fcd07e57077e5d4d9d87ec57f064c24 601 SUPERFAMILY SSF56801 8 599 1.31E-109 T 14-10-2018 YP_3645 0fcd07e57077e5d4d9d87ec57f064c24 601 Gene3D G3DSA:3.40.50.12780 325 463 2.6E-32 T 14-10-2018 YP_2685 82b85e0dd3283a4a35f9c8f911ed3eac 238 Pfam PF13740 ACT domain 56 131 8.0E-26 T 14-10-2018 YP_2685 82b85e0dd3283a4a35f9c8f911ed3eac 238 SUPERFAMILY SSF55021 140 228 6.66E-19 T 14-10-2018 YP_2685 82b85e0dd3283a4a35f9c8f911ed3eac 238 SUPERFAMILY SSF55021 55 134 2.33E-16 T 14-10-2018 YP_2685 82b85e0dd3283a4a35f9c8f911ed3eac 238 Gene3D G3DSA:3.30.70.260 140 237 1.6E-30 T 14-10-2018 YP_2685 82b85e0dd3283a4a35f9c8f911ed3eac 238 Gene3D G3DSA:3.30.70.260 54 138 3.0E-25 T 14-10-2018 YP_3041 b4bc47049bf05042f5a9a5e5c71799e5 391 Pfam PF02119 Flagellar P-ring protein 51 390 1.8E-130 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_3041 b4bc47049bf05042f5a9a5e5c71799e5 391 PRINTS PR01010 Flagellar P-ring protein signature 147 165 2.0E-71 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_3041 b4bc47049bf05042f5a9a5e5c71799e5 391 PRINTS PR01010 Flagellar P-ring protein signature 108 127 2.0E-71 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_3041 b4bc47049bf05042f5a9a5e5c71799e5 391 PRINTS PR01010 Flagellar P-ring protein signature 130 147 2.0E-71 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_3041 b4bc47049bf05042f5a9a5e5c71799e5 391 PRINTS PR01010 Flagellar P-ring protein signature 278 290 2.0E-71 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_3041 b4bc47049bf05042f5a9a5e5c71799e5 391 PRINTS PR01010 Flagellar P-ring protein signature 48 63 2.0E-71 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_3041 b4bc47049bf05042f5a9a5e5c71799e5 391 PRINTS PR01010 Flagellar P-ring protein signature 82 97 2.0E-71 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_3041 b4bc47049bf05042f5a9a5e5c71799e5 391 PRINTS PR01010 Flagellar P-ring protein signature 63 78 2.0E-71 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_3041 b4bc47049bf05042f5a9a5e5c71799e5 391 PRINTS PR01010 Flagellar P-ring protein signature 214 232 2.0E-71 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_3041 b4bc47049bf05042f5a9a5e5c71799e5 391 PRINTS PR01010 Flagellar P-ring protein signature 188 206 2.0E-71 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_3041 b4bc47049bf05042f5a9a5e5c71799e5 391 Hamap MF_00416 Flagellar P-ring protein [flgI]. 32 391 35.724 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YP_0710 3c0672d89d34f0e33c3b0e33497fb81c 133 Hamap MF_01178 Sigma factor-binding protein Crl [crl]. 3 128 32.466 T 14-10-2018 IPR009986 Sigma factor-binding protein Crl GO:0045893 YP_0710 3c0672d89d34f0e33c3b0e33497fb81c 133 Pfam PF07417 Transcriptional regulator Crl 5 122 3.5E-54 T 14-10-2018 IPR009986 Sigma factor-binding protein Crl GO:0045893 YP_0710 3c0672d89d34f0e33c3b0e33497fb81c 133 Gene3D G3DSA:3.30.310.230 1 133 3.6E-57 T 14-10-2018 IPR038208 Sigma factor-binding protein Crl superfamily GO:0045893 YP_1100 ce71427ebb695bc3377af38697cc35b8 224 Gene3D G3DSA:1.10.3720.10 2 224 1.6E-50 T 14-10-2018 IPR035906 MetI-like superfamily YP_1100 ce71427ebb695bc3377af38697cc35b8 224 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 223 2.5E-17 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_1100 ce71427ebb695bc3377af38697cc35b8 224 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 118 1.6E-24 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YP_1100 ce71427ebb695bc3377af38697cc35b8 224 SUPERFAMILY SSF161098 14 209 4.06E-39 T 14-10-2018 IPR035906 MetI-like superfamily YP_1567 397524a12ab35cf7b866387b98321789 450 Gene3D G3DSA:3.30.750.140 295 408 6.6E-38 T 14-10-2018 IPR038610 FliK-like, C-terminal domain superfamily YP_1567 397524a12ab35cf7b866387b98321789 450 Pfam PF02120 Flagellar hook-length control protein FliK 315 397 1.6E-20 T 14-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal YP_1567 397524a12ab35cf7b866387b98321789 450 PRINTS PR01007 Flagellar hook-length control protein signature 363 386 1.8E-37 T 14-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 YP_1567 397524a12ab35cf7b866387b98321789 450 PRINTS PR01007 Flagellar hook-length control protein signature 348 363 1.8E-37 T 14-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 YP_1567 397524a12ab35cf7b866387b98321789 450 PRINTS PR01007 Flagellar hook-length control protein signature 282 304 1.8E-37 T 14-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 YP_1567 397524a12ab35cf7b866387b98321789 450 PRINTS PR01007 Flagellar hook-length control protein signature 305 327 1.8E-37 T 14-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 YP_1567 397524a12ab35cf7b866387b98321789 450 PRINTS PR01007 Flagellar hook-length control protein signature 74 91 1.8E-37 T 14-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 YP_1567 397524a12ab35cf7b866387b98321789 450 PRINTS PR01007 Flagellar hook-length control protein signature 330 348 1.8E-37 T 14-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 YP_0469 58cbea32495370e49791f95ad08149a3 123 Pfam PF01219 Prokaryotic diacylglycerol kinase 17 117 1.0E-33 T 14-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 YP_0469 58cbea32495370e49791f95ad08149a3 123 Gene3D G3DSA:1.10.3830.10 2 122 2.3E-40 T 14-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 YP_0469 58cbea32495370e49791f95ad08149a3 123 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 70 81 - T 14-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 YP_1588 4efd3434db576b3931562c304e36605e 243 Pfam PF02107 Flagellar L-ring protein 59 242 5.5E-59 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YP_1588 4efd3434db576b3931562c304e36605e 243 Hamap MF_00415 Flagellar L-ring protein [flgH]. 15 241 27.546 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YP_1588 4efd3434db576b3931562c304e36605e 243 PRINTS PR01008 Flagellar L-ring protein signature 183 199 4.0E-35 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YP_1588 4efd3434db576b3931562c304e36605e 243 PRINTS PR01008 Flagellar L-ring protein signature 84 96 4.0E-35 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YP_1588 4efd3434db576b3931562c304e36605e 243 PRINTS PR01008 Flagellar L-ring protein signature 157 172 4.0E-35 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YP_1588 4efd3434db576b3931562c304e36605e 243 PRINTS PR01008 Flagellar L-ring protein signature 204 218 4.0E-35 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YP_1588 4efd3434db576b3931562c304e36605e 243 PRINTS PR01008 Flagellar L-ring protein signature 220 234 4.0E-35 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YP_1969 0901941b6a45182f4709e592f68500f8 286 Gene3D G3DSA:1.10.10.10 3 91 6.2E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1969 0901941b6a45182f4709e592f68500f8 286 SUPERFAMILY SSF46785 5 79 3.47E-14 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_1969 0901941b6a45182f4709e592f68500f8 286 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.9E-14 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_0868 d3f7bcc74a9fc69633d7b5c03da62ecc 439 Pfam PF14378 PAP2 superfamily 78 200 1.1E-8 T 14-10-2018 IPR026841 Inositolphosphotransferase Aur1/Ipt1 YP_0868 d3f7bcc74a9fc69633d7b5c03da62ecc 439 Gene3D G3DSA:3.90.190.10 303 436 3.1E-20 T 14-10-2018 IPR029021 Protein-tyrosine phosphatase-like YP_0868 d3f7bcc74a9fc69633d7b5c03da62ecc 439 SMART SM00404 337 428 0.0065 T 14-10-2018 IPR003595 Protein-tyrosine phosphatase, catalytic YP_0868 d3f7bcc74a9fc69633d7b5c03da62ecc 439 SUPERFAMILY SSF52799 285 436 9.62E-23 T 14-10-2018 IPR029021 Protein-tyrosine phosphatase-like YP_0868 d3f7bcc74a9fc69633d7b5c03da62ecc 439 SMART SM00195 302 433 1.7E-7 T 14-10-2018 IPR020422 Dual specificity protein phosphatase domain GO:0006470|GO:0008138 YP_0868 d3f7bcc74a9fc69633d7b5c03da62ecc 439 Pfam PF00782 Dual specificity phosphatase, catalytic domain 346 431 2.7E-14 T 14-10-2018 IPR000340 Dual specificity phosphatase, catalytic domain GO:0008138|GO:0016311 YP_3402 5417c2b2f11fa533de6a20c7bab46e35 328 SUPERFAMILY SSF49401 203 327 4.57E-11 T 14-10-2018 IPR008966 Adhesion domain superfamily YP_3402 5417c2b2f11fa533de6a20c7bab46e35 328 Pfam PF00419 Fimbrial protein 204 327 6.9E-10 T 14-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YP_3402 5417c2b2f11fa533de6a20c7bab46e35 328 Gene3D G3DSA:2.60.40.1090 199 327 2.9E-6 T 14-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YP_1074 c0fac093a306f107c0672fd50f00c830 87 Pfam PF01527 Transposase 2 70 3.0E-23 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 YP_1074 c0fac093a306f107c0672fd50f00c830 87 SUPERFAMILY SSF46689 1 72 2.33E-14 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3953 485f868e3f9e91d268436ef3fbfb2f87 448 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 446 1.2E-158 T 14-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YP_3953 485f868e3f9e91d268436ef3fbfb2f87 448 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 445 6.9E-154 T 14-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 641 7.4E-282 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 1.6E-58 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 631 644 1.6E-58 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 1.6E-58 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 1.6E-58 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 1.6E-58 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 1.6E-58 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 1.6E-58 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 637 6.1E-131 T 14-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 2.2E-93 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 2.2E-93 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 2.2E-93 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 2.2E-93 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 2.2E-93 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 2.2E-93 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 2.2E-93 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 2.2E-93 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 YP_2425 fa3bf10fe416a14048b549f4651da0eb 656 Pfam PF01578 Cytochrome C assembly protein 89 296 1.6E-54 T 14-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 YP_0953 be7223be5a8389d10b7410bb1f04d929 309 Gene3D G3DSA:3.40.190.10 117 243 1.1E-54 T 14-10-2018 YP_0953 be7223be5a8389d10b7410bb1f04d929 309 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 1 305 8.1E-103 T 14-10-2018 IPR017797 Phosphonate ABC transporter, substrate-binding protein GO:0015716|GO:0043190 YP_0953 be7223be5a8389d10b7410bb1f04d929 309 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 1 268 8.4E-85 T 14-10-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 YP_0953 be7223be5a8389d10b7410bb1f04d929 309 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 44 285 1.2E-47 T 14-10-2018 YP_0953 be7223be5a8389d10b7410bb1f04d929 309 SUPERFAMILY SSF53850 26 300 2.3E-44 T 14-10-2018 YP_0953 be7223be5a8389d10b7410bb1f04d929 309 Gene3D G3DSA:3.40.190.10 31 272 1.1E-54 T 14-10-2018 YP_1267 aafa8f2eca90811cc339f20904de3cab 271 Pfam PF01569 PAP2 superfamily 136 259 2.5E-8 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YP_1267 aafa8f2eca90811cc339f20904de3cab 271 SUPERFAMILY SSF48317 47 260 5.23E-12 T 14-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YP_1267 aafa8f2eca90811cc339f20904de3cab 271 Gene3D G3DSA:1.20.144.10 178 271 2.2E-7 T 14-10-2018 YP_3031 bb297d45bc7197c4195f47d9ff9f842f 141 Gene3D G3DSA:1.20.58.300 4 132 6.7E-17 T 14-10-2018 YP_3031 bb297d45bc7197c4195f47d9ff9f842f 141 Pfam PF05130 FlgN protein 7 130 4.3E-14 T 14-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 YP_3031 bb297d45bc7197c4195f47d9ff9f842f 141 SUPERFAMILY SSF140566 7 130 2.48E-22 T 14-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 YP_2059 0ceac885ac3cc2137de253d70b19cd42 514 Pfam PF06097 Bacterial protein of unknown function (DUF945) 1 470 1.6E-140 T 14-10-2018 IPR010352 Protein of unknown function DUF945 YP_3353 e34e7f18596d8460cd6e10c838b795f1 314 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 262 275 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 YP_3353 e34e7f18596d8460cd6e10c838b795f1 314 Gene3D G3DSA:3.40.1190.20 1 312 4.1E-87 T 14-10-2018 IPR029056 Ribokinase-like YP_3353 e34e7f18596d8460cd6e10c838b795f1 314 Pfam PF00294 pfkB family carbohydrate kinase 4 308 2.3E-68 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB YP_3353 e34e7f18596d8460cd6e10c838b795f1 314 SUPERFAMILY SSF53613 1 307 2.65E-73 T 14-10-2018 IPR029056 Ribokinase-like YP_3918 cd3d032ee3bde668d5d50b02cde25e30 451 Pfam PF00860 Permease family 28 411 8.4E-82 T 14-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 YP_0634 f521b1fba1dcb1ea7874e059c6da3535 278 SUPERFAMILY SSF161098 72 257 1.27E-27 T 14-10-2018 IPR035906 MetI-like superfamily YP_0634 f521b1fba1dcb1ea7874e059c6da3535 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 275 1.3E-28 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_0634 f521b1fba1dcb1ea7874e059c6da3535 278 Gene3D G3DSA:1.10.3720.10 65 273 1.2E-23 T 14-10-2018 IPR035906 MetI-like superfamily YP_0634 f521b1fba1dcb1ea7874e059c6da3535 278 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 7 53 1.8E-9 T 14-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YP_2785 10ba1628845ff53e67d7bc89ac372e32 66 Hamap MF_01064 UPF0253 protein YaeP [yaeP]. 1 66 26.197 T 14-10-2018 IPR009624 Uncharacterised protein family UPF0253 YP_2785 10ba1628845ff53e67d7bc89ac372e32 66 Pfam PF06786 Uncharacterised protein family (UPF0253) 2 65 6.2E-37 T 14-10-2018 IPR009624 Uncharacterised protein family UPF0253 YP_2785 10ba1628845ff53e67d7bc89ac372e32 66 ProDom PD054643 UPF0253 YAEP CYTOPLASMIC VP2335 YPO1064.1/Y3113/YP2785 VC0872 VV2574 PBPRA2947 VV11836 1 66 1.0E-30 T 14-10-2018 IPR009624 Uncharacterised protein family UPF0253 YP_2190 50605f0bb652d33cbaa1b7e734bf5515 503 Pfam PF01458 Uncharacterized protein family (UPF0051) 242 474 7.1E-68 T 14-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 YP_2190 50605f0bb652d33cbaa1b7e734bf5515 503 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 21 494 2.5E-193 T 14-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 YP_2190 50605f0bb652d33cbaa1b7e734bf5515 503 SUPERFAMILY SSF101960 41 500 3.53E-134 T 14-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily YP_3582 a5889521d781db1022dbc1a5d4555cc1 86 Gene3D G3DSA:3.30.2310.20 2 86 4.7E-16 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily YP_3582 a5889521d781db1022dbc1a5d4555cc1 86 SUPERFAMILY SSF143011 1 81 4.05E-16 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily YP_3582 a5889521d781db1022dbc1a5d4555cc1 86 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 72 1.3E-6 T 14-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family YP_2726 d8e39ec8a31393a158d278e7c0f4ba01 159 Pfam PF06092 Enterobacterial putative membrane protein (DUF943) 12 157 1.9E-63 T 14-10-2018 IPR010351 Protein of unknown function DUF943 YP_0156 a385d9919fb510604bdd45c6141cf83a 271 Gene3D G3DSA:1.10.1020.10 57 156 4.9E-85 T 14-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 YP_0156 a385d9919fb510604bdd45c6141cf83a 271 PIRSF PIRSF000398 1 271 3.4E-63 T 14-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 YP_0156 a385d9919fb510604bdd45c6141cf83a 271 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 1.7E-18 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YP_0156 a385d9919fb510604bdd45c6141cf83a 271 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 1.7E-18 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YP_0156 a385d9919fb510604bdd45c6141cf83a 271 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 1.7E-18 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YP_0156 a385d9919fb510604bdd45c6141cf83a 271 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 50 63 1.7E-18 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YP_0156 a385d9919fb510604bdd45c6141cf83a 271 Gene3D G3DSA:3.40.50.150 7 239 4.9E-85 T 14-10-2018 YP_0156 a385d9919fb510604bdd45c6141cf83a 271 TIGRFAM TIGR00571 dam: DNA adenine methylase 5 269 2.4E-93 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YP_0156 a385d9919fb510604bdd45c6141cf83a 271 SUPERFAMILY SSF53335 5 269 3.06E-70 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_0156 a385d9919fb510604bdd45c6141cf83a 271 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YP_0156 a385d9919fb510604bdd45c6141cf83a 271 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 253 1.6E-74 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YP_0478 7aaeb75657213b53e752f3e2b8973b8f 119 SUPERFAMILY SSF142906 1 115 1.09E-36 T 14-10-2018 IPR038056 YjbR-like superfamily YP_0478 7aaeb75657213b53e752f3e2b8973b8f 119 Pfam PF04237 YjbR 11 102 4.5E-20 T 14-10-2018 IPR007351 Uncharacterised protein YjbR YP_0478 7aaeb75657213b53e752f3e2b8973b8f 119 Gene3D G3DSA:3.90.1150.30 1 119 2.0E-41 T 14-10-2018 IPR038056 YjbR-like superfamily YP_3213 1eecf44797e6cab923e34896d13623f5 156 SUPERFAMILY SSF54637 13 155 1.0E-24 T 14-10-2018 IPR029069 HotDog domain superfamily YP_3213 1eecf44797e6cab923e34896d13623f5 156 Pfam PF03061 Thioesterase superfamily 58 143 1.9E-15 T 14-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 YP_3213 1eecf44797e6cab923e34896d13623f5 156 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 27 154 2.8E-15 T 14-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 YP_3213 1eecf44797e6cab923e34896d13623f5 156 Gene3D G3DSA:3.10.129.10 4 156 2.3E-48 T 14-10-2018 YP_3484 4c482d57eff7a2ada8ea8f5860b5bd35 339 Pfam PF02653 Branched-chain amino acid transport system / permease component 64 328 4.7E-45 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_3020 24d11d2a3cd4eba09ca0b831493b8da9 90 Pfam PF01313 Bacterial export proteins, family 3 9 78 2.5E-25 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_3020 24d11d2a3cd4eba09ca0b831493b8da9 90 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 2 88 8.5E-27 T 14-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 YP_3020 24d11d2a3cd4eba09ca0b831493b8da9 90 PIRSF PIRSF004669 2 90 1.8E-30 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_3020 24d11d2a3cd4eba09ca0b831493b8da9 90 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 19 40 6.6E-17 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_3020 24d11d2a3cd4eba09ca0b831493b8da9 90 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 55 77 6.6E-17 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_3020 24d11d2a3cd4eba09ca0b831493b8da9 90 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 40 55 6.6E-17 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_3463 5b3836ca85c5aa580356acd991918f78 450 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 448 7.6E-139 T 14-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YP_3463 5b3836ca85c5aa580356acd991918f78 450 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 18 447 2.5E-136 T 14-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YP_2414 4ddd1f0be973fb56fd52a93bac915c8c 203 Hamap MF_01042 UPF0115 protein YfcN [yfcN]. 28 201 39.916 T 14-10-2018 IPR022990 Uncharacterised protein family UPF0115 YP_2414 4ddd1f0be973fb56fd52a93bac915c8c 203 Pfam PF01713 Smr domain 125 197 1.7E-17 T 14-10-2018 IPR002625 Smr domain YP_2414 4ddd1f0be973fb56fd52a93bac915c8c 203 SUPERFAMILY SSF160443 122 177 1.57E-9 T 14-10-2018 IPR036063 Smr domain superfamily YP_2414 4ddd1f0be973fb56fd52a93bac915c8c 203 SMART SM00463 122 200 5.1E-18 T 14-10-2018 IPR002625 Smr domain YP_2414 4ddd1f0be973fb56fd52a93bac915c8c 203 Gene3D G3DSA:3.30.1370.110 77 203 1.3E-28 T 14-10-2018 YP_0686 0c94c8e107846d33750016b579345f47 617 Gene3D G3DSA:3.40.50.11380 265 404 1.0E-126 T 14-10-2018 YP_0686 0c94c8e107846d33750016b579345f47 617 Gene3D G3DSA:3.40.50.2000 405 585 1.0E-126 T 14-10-2018 YP_2410 eac5bc96c2d4f2997a6e5ccd095d02cd 268 Pfam PF01925 Sulfite exporter TauE/SafE 14 248 7.0E-45 T 14-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 YP_2783 0a8249f1b57856e4b0fdbfb8cd9afd2f 146 Gene3D G3DSA:3.30.160.20 9 146 2.5E-36 T 14-10-2018 YP_2783 0a8249f1b57856e4b0fdbfb8cd9afd2f 146 SUPERFAMILY SSF75620 15 123 1.84E-13 T 14-10-2018 YP_2783 0a8249f1b57856e4b0fdbfb8cd9afd2f 146 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 29 45 - T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 YP_2783 0a8249f1b57856e4b0fdbfb8cd9afd2f 146 Pfam PF00472 RF-1 domain 16 137 5.2E-22 T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 YP_2196 406eb0cde8b1ea19f2afe26cd4c6e899 784 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 687 705 - T 14-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 YP_2196 406eb0cde8b1ea19f2afe26cd4c6e899 784 Gene3D G3DSA:3.20.20.60 471 783 3.5E-100 T 14-10-2018 YP_2196 406eb0cde8b1ea19f2afe26cd4c6e899 784 SUPERFAMILY SSF56059 1 377 8.71E-106 T 14-10-2018 YP_2196 406eb0cde8b1ea19f2afe26cd4c6e899 784 Gene3D G3DSA:3.50.30.10 354 470 4.3E-41 T 14-10-2018 YP_2196 406eb0cde8b1ea19f2afe26cd4c6e899 784 SUPERFAMILY SSF52009 341 459 7.85E-36 T 14-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 YP_2196 406eb0cde8b1ea19f2afe26cd4c6e899 784 Pfam PF00391 PEP-utilising enzyme, mobile domain 377 448 7.0E-27 T 14-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 YP_2196 406eb0cde8b1ea19f2afe26cd4c6e899 784 SUPERFAMILY SSF51621 460 782 3.4E-97 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YP_2196 406eb0cde8b1ea19f2afe26cd4c6e899 784 Gene3D G3DSA:3.30.470.20 189 350 1.8E-59 T 14-10-2018 YP_2196 406eb0cde8b1ea19f2afe26cd4c6e899 784 PIRSF PIRSF000854 1 784 0.0 T 14-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 YP_2196 406eb0cde8b1ea19f2afe26cd4c6e899 784 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 407 418 - T 14-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 YP_2196 406eb0cde8b1ea19f2afe26cd4c6e899 784 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 475 780 3.7E-60 T 14-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 YP_2196 406eb0cde8b1ea19f2afe26cd4c6e899 784 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 13 340 4.1E-117 T 14-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 YP_2196 406eb0cde8b1ea19f2afe26cd4c6e899 784 Gene3D G3DSA:3.30.1490.20 1 188 7.6E-70 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YP_2196 406eb0cde8b1ea19f2afe26cd4c6e899 784 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 1 781 0.0 T 14-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 YP_pCD34 c4ca389b1fd4cdbc7bae10aa779cf859 271 SMART SM00342 180 263 1.0E-30 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_pCD34 c4ca389b1fd4cdbc7bae10aa779cf859 271 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 232 247 5.0E-8 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_pCD34 c4ca389b1fd4cdbc7bae10aa779cf859 271 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 247 263 5.0E-8 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YP_pCD34 c4ca389b1fd4cdbc7bae10aa779cf859 271 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 217 259 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YP_pCD34 c4ca389b1fd4cdbc7bae10aa779cf859 271 SUPERFAMILY SSF46689 216 263 1.22E-13 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_pCD34 c4ca389b1fd4cdbc7bae10aa779cf859 271 SUPERFAMILY SSF51215 21 145 4.58E-8 T 14-10-2018 IPR037923 Transcription regulator HTH-like YP_pCD34 c4ca389b1fd4cdbc7bae10aa779cf859 271 Pfam PF02311 AraC-like ligand binding domain 26 130 7.1E-5 T 14-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 YP_pCD34 c4ca389b1fd4cdbc7bae10aa779cf859 271 Gene3D G3DSA:1.10.10.60 159 268 2.2E-27 T 14-10-2018 YP_pCD34 c4ca389b1fd4cdbc7bae10aa779cf859 271 Pfam PF12833 Helix-turn-helix domain 187 263 2.9E-23 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YP_1856 3563c3bdc8bce5240cee69c1f7e6629a 169 Gene3D G3DSA:3.30.420.10 20 169 1.5E-9 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_1856 3563c3bdc8bce5240cee69c1f7e6629a 169 SUPERFAMILY SSF53098 27 166 2.58E-29 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1856 3563c3bdc8bce5240cee69c1f7e6629a 169 Pfam PF00665 Integrase core domain 26 125 2.2E-19 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_2779 18c0b35e96b10ae902fa39657e505a34 135 Gene3D G3DSA:3.30.110.70 31 135 5.9E-38 T 14-10-2018 YP_2779 18c0b35e96b10ae902fa39657e505a34 135 Pfam PF16358 RcsF lipoprotein 39 133 9.0E-53 T 14-10-2018 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 YP_2779 18c0b35e96b10ae902fa39657e505a34 135 Hamap MF_00976 Outer membrane lipoprotein RcsF [rcsF]. 1 134 36.594 T 14-10-2018 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 YP_1926 cd5d9040c065ae598cc9767cca6ce3fd 148 Pfam PF03692 Putative zinc- or iron-chelating domain 24 92 3.0E-7 T 14-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein YP_1926 cd5d9040c065ae598cc9767cca6ce3fd 148 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 2 145 40.958 T 14-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 YP_1926 cd5d9040c065ae598cc9767cca6ce3fd 148 PIRSF PIRSF006173 1 145 7.8E-66 T 14-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 YP_1209 7d566640d56a0f5355f5d2573f052e82 285 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 83 92 - T 14-10-2018 IPR024002 Formate/nitrite transporter, conserved site YP_1209 7d566640d56a0f5355f5d2573f052e82 285 Pfam PF01226 Formate/nitrite transporter 15 276 8.9E-76 T 14-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 YP_1209 7d566640d56a0f5355f5d2573f052e82 285 Gene3D G3DSA:1.20.1080.10 1 268 2.9E-104 T 14-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 YP_1209 7d566640d56a0f5355f5d2573f052e82 285 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 14 279 1.7E-129 T 14-10-2018 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 YP_1209 7d566640d56a0f5355f5d2573f052e82 285 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 168 178 - T 14-10-2018 IPR024002 Formate/nitrite transporter, conserved site YP_1209 7d566640d56a0f5355f5d2573f052e82 285 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 26 280 1.0E-92 T 14-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 YP_1466 fbd4a2b90f09b2a0464c30bd021f9900 168 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 27 153 1.8E-22 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ YP_0049 748e7f716d7b5f36d3b2a845cc7b5143 405 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 6 396 1.8E-163 T 14-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 YP_0049 748e7f716d7b5f36d3b2a845cc7b5143 405 Gene3D G3DSA:3.40.50.10300 188 405 2.5E-87 T 14-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 YP_0049 748e7f716d7b5f36d3b2a845cc7b5143 405 Pfam PF02441 Flavoprotein 8 179 1.3E-45 T 14-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 YP_0049 748e7f716d7b5f36d3b2a845cc7b5143 405 Gene3D G3DSA:3.40.50.1950 2 187 2.3E-58 T 14-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 YP_0049 748e7f716d7b5f36d3b2a845cc7b5143 405 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 189 370 2.7E-74 T 14-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 YP_0049 748e7f716d7b5f36d3b2a845cc7b5143 405 SUPERFAMILY SSF52507 4 182 8.76E-62 T 14-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 YP_0049 748e7f716d7b5f36d3b2a845cc7b5143 405 SUPERFAMILY SSF102645 186 401 2.75E-80 T 14-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 YP_1033 d127b0ecd5b359339743b9a4c2e3e654 401 Pfam PF06519 TolA C-terminal 306 398 8.1E-37 T 14-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 YP_1033 d127b0ecd5b359339743b9a4c2e3e654 401 SUPERFAMILY SSF74653 313 401 5.49E-20 T 14-10-2018 YP_1033 d127b0ecd5b359339743b9a4c2e3e654 401 TIGRFAM TIGR02794 tolA_full: protein TolA 18 400 1.3E-99 T 14-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 YP_1033 d127b0ecd5b359339743b9a4c2e3e654 401 Gene3D G3DSA:3.30.1150.10 323 395 1.3E-34 T 14-10-2018 YP_0610 89d00783a63b5ead1f07f0975377be2e 408 SUPERFAMILY SSF48230 80 359 9.15E-47 T 14-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 YP_0610 89d00783a63b5ead1f07f0975377be2e 408 Pfam PF05426 Alginate lyase 73 352 2.8E-71 T 14-10-2018 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 YP_0610 89d00783a63b5ead1f07f0975377be2e 408 Gene3D G3DSA:1.50.10.100 33 404 1.4E-116 T 14-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 YP_0166 3311a9853ba116e0bbfd58d71bdee97f 686 SUPERFAMILY SSF56935 65 686 2.42E-84 T 14-10-2018 YP_0166 3311a9853ba116e0bbfd58d71bdee97f 686 Pfam PF00593 TonB dependent receptor 233 685 1.6E-37 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YP_0166 3311a9853ba116e0bbfd58d71bdee97f 686 Pfam PF07715 TonB-dependent Receptor Plug Domain 79 178 5.1E-12 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain YP_0166 3311a9853ba116e0bbfd58d71bdee97f 686 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 79 686 5.4E-248 T 14-10-2018 IPR010100 TonB-dependent copper receptor YP_0166 3311a9853ba116e0bbfd58d71bdee97f 686 Gene3D G3DSA:2.40.170.20 190 686 1.2E-58 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_0166 3311a9853ba116e0bbfd58d71bdee97f 686 Gene3D G3DSA:2.170.130.10 73 185 2.9E-12 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YP_2163 c21de816a4d57cc0f8c505e33e36a53b 545 Pfam PF08019 Domain of unknown function (DUF1705) 56 208 1.4E-49 T 14-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 YP_2163 c21de816a4d57cc0f8c505e33e36a53b 545 SUPERFAMILY SSF53649 237 539 9.45E-23 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YP_2163 c21de816a4d57cc0f8c505e33e36a53b 545 Pfam PF00884 Sulfatase 237 525 1.4E-45 T 14-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 YP_2163 c21de816a4d57cc0f8c505e33e36a53b 545 Gene3D G3DSA:3.40.720.10 215 545 1.1E-87 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YP_2616 41795cb14b36e777735f215afbc48dc3 244 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 6 222 2.2E-45 T 14-10-2018 YP_2616 41795cb14b36e777735f215afbc48dc3 244 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 1 240 28.747 T 14-10-2018 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 YP_3283 e2dd652845e97a9dab4e43f1d704de13 443 Gene3D G3DSA:3.40.350.10 1 159 3.7E-63 T 14-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YP_3283 e2dd652845e97a9dab4e43f1d704de13 443 Pfam PF00557 Metallopeptidase family M24 168 430 2.7E-40 T 14-10-2018 IPR000994 Peptidase M24 YP_3283 e2dd652845e97a9dab4e43f1d704de13 443 SUPERFAMILY SSF55920 163 438 9.81E-53 T 14-10-2018 IPR036005 Creatinase/aminopeptidase-like YP_3283 e2dd652845e97a9dab4e43f1d704de13 443 Gene3D G3DSA:3.90.230.10 161 443 4.4E-75 T 14-10-2018 YP_3283 e2dd652845e97a9dab4e43f1d704de13 443 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 335 347 - T 14-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YP_3283 e2dd652845e97a9dab4e43f1d704de13 443 Hamap MF_01279 Xaa-Pro dipeptidase [pepQ]. 1 443 58.618 T 14-10-2018 IPR022846 Xaa-Pro dipeptidase GO:0016795 YP_1988 93d10a9b317cb79a19674ba557cbd8d2 179 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 171 179 - T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_1988 93d10a9b317cb79a19674ba557cbd8d2 179 Pfam PF13505 Outer membrane protein beta-barrel domain 11 179 1.2E-23 T 14-10-2018 IPR027385 Outer membrane protein beta-barrel YP_1988 93d10a9b317cb79a19674ba557cbd8d2 179 Gene3D G3DSA:2.40.160.20 25 179 2.7E-52 T 14-10-2018 YP_1988 93d10a9b317cb79a19674ba557cbd8d2 179 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 140 161 1.1E-31 T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_1988 93d10a9b317cb79a19674ba557cbd8d2 179 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 167 178 1.1E-31 T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_1988 93d10a9b317cb79a19674ba557cbd8d2 179 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 52 64 1.1E-31 T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_1988 93d10a9b317cb79a19674ba557cbd8d2 179 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 93 116 1.1E-31 T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YP_1988 93d10a9b317cb79a19674ba557cbd8d2 179 SUPERFAMILY SSF56925 30 179 2.12E-27 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_3030 03e280804fc6221d4da3d26d112562a5 145 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 6 139 4.0E-27 T 14-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 YP_3030 03e280804fc6221d4da3d26d112562a5 145 Pfam PF02050 Flagellar FliJ protein 17 136 9.4E-8 T 14-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 YP_1607 d9e179be035d32ee4faf25b65098da5f 294 Pfam PF05425 Copper resistance protein D 189 287 1.4E-19 T 14-10-2018 IPR008457 Copper resistance protein D GO:0016021 YP_3750 6107464d672431e495bb2895f893cf72 204 Pfam PF04972 BON domain 137 204 2.5E-18 T 14-10-2018 IPR007055 BON domain YP_3750 6107464d672431e495bb2895f893cf72 204 Pfam PF04972 BON domain 57 124 2.1E-22 T 14-10-2018 IPR007055 BON domain YP_3750 6107464d672431e495bb2895f893cf72 204 SMART SM00749 62 125 9.5E-11 T 14-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria YP_3750 6107464d672431e495bb2895f893cf72 204 SMART SM00749 141 204 2.6E-12 T 14-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria YP_3241 ea2d222e721ba7d8968bdf44de84ff58 376 SUPERFAMILY SSF53822 31 373 1.72E-89 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_3241 ea2d222e721ba7d8968bdf44de84ff58 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 32 48 7.4E-63 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YP_3241 ea2d222e721ba7d8968bdf44de84ff58 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 260 278 7.4E-63 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YP_3241 ea2d222e721ba7d8968bdf44de84ff58 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 73 91 7.4E-63 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YP_3241 ea2d222e721ba7d8968bdf44de84ff58 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 283 296 7.4E-63 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YP_3241 ea2d222e721ba7d8968bdf44de84ff58 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 336 351 7.4E-63 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YP_3241 ea2d222e721ba7d8968bdf44de84ff58 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 54 70 7.4E-63 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YP_3241 ea2d222e721ba7d8968bdf44de84ff58 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 94 104 7.4E-63 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YP_3241 ea2d222e721ba7d8968bdf44de84ff58 376 Gene3D G3DSA:3.40.50.2300 33 348 1.7E-117 T 14-10-2018 YP_3241 ea2d222e721ba7d8968bdf44de84ff58 376 Gene3D G3DSA:3.40.50.2300 150 278 1.7E-117 T 14-10-2018 YP_3241 ea2d222e721ba7d8968bdf44de84ff58 376 Pfam PF13458 Periplasmic binding protein 32 365 4.4E-63 T 14-10-2018 IPR028081 Leucine-binding protein domain YP_1488 3a84e2e879d36a645b53e143fca1da67 279 PIRSF PIRSF018249 1 271 4.5E-84 T 14-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 YP_1488 3a84e2e879d36a645b53e143fca1da67 279 Pfam PF13847 Methyltransferase domain 86 199 3.3E-11 T 14-10-2018 IPR025714 Methyltransferase domain YP_1488 3a84e2e879d36a645b53e143fca1da67 279 Gene3D G3DSA:3.40.50.150 1 272 9.4E-79 T 14-10-2018 YP_1488 3a84e2e879d36a645b53e143fca1da67 279 SUPERFAMILY SSF53335 4 242 3.29E-42 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_2157 47432ef57f02cbc6c0b0251e1fcc80b8 83 SUPERFAMILY SSF141488 8 80 4.97E-23 T 14-10-2018 IPR036328 C-type lysozyme inhibitor superfamily YP_2157 47432ef57f02cbc6c0b0251e1fcc80b8 83 Gene3D G3DSA:2.40.128.200 6 82 5.2E-27 T 14-10-2018 IPR036328 C-type lysozyme inhibitor superfamily YP_2157 47432ef57f02cbc6c0b0251e1fcc80b8 83 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 12 73 2.7E-17 T 14-10-2018 IPR018660 C-type lysozyme inhibitor YP_0571 984c9117a25c3de5a866874ad209020e 119 TIGRFAM TIGR00061 L21: ribosomal protein bL21 18 117 3.5E-44 T 14-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0571 984c9117a25c3de5a866874ad209020e 119 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 17 119 27.14 T 14-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0571 984c9117a25c3de5a866874ad209020e 119 SUPERFAMILY SSF141091 17 118 6.02E-38 T 14-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_0571 984c9117a25c3de5a866874ad209020e 119 ProSitePatterns PS01169 Ribosomal protein L21 signature. 88 110 - T 14-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0571 984c9117a25c3de5a866874ad209020e 119 Pfam PF00829 Ribosomal prokaryotic L21 protein 17 117 3.0E-39 T 14-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YP_2045 ecf740b9d862cdfd5fcd28b626a3198c 147 Pfam PF10754 Protein of unknown function (DUF2569) 7 145 3.5E-45 T 14-10-2018 IPR019690 Protein of unknown function DUF2569 YP_1798 8611fdb5644865e2996739b71ad322ca 411 Pfam PF07690 Major Facilitator Superfamily 29 361 4.8E-30 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_1798 8611fdb5644865e2996739b71ad322ca 411 Gene3D G3DSA:1.20.1250.20 206 407 3.5E-23 T 14-10-2018 YP_1798 8611fdb5644865e2996739b71ad322ca 411 Gene3D G3DSA:1.20.1250.20 3 199 2.2E-19 T 14-10-2018 YP_1798 8611fdb5644865e2996739b71ad322ca 411 SUPERFAMILY SSF103473 3 407 4.32E-46 T 14-10-2018 IPR036259 MFS transporter superfamily YP_0456 06f31f2a4d8d074e73d7bb0ae9c19f73 194 Gene3D G3DSA:2.60.60.30 21 188 1.7E-79 T 14-10-2018 YP_0456 06f31f2a4d8d074e73d7bb0ae9c19f73 194 Pfam PF02342 TerD domain 3 189 1.9E-86 T 14-10-2018 IPR003325 TerD domain YP_1380 729a7c908d56c20df834e1e62cac33f0 207 Gene3D G3DSA:1.20.1260.90 34 202 2.1E-7 T 14-10-2018 IPR038334 NleF superfamily YP_1380 729a7c908d56c20df834e1e62cac33f0 207 Pfam PF16809 NleF caspase inhibitor 35 195 1.4E-65 T 14-10-2018 IPR031829 Effector protein NleF YP_1451 22fe0360d3726d946b7596653d0c8be2 466 Gene3D G3DSA:1.20.1250.20 44 250 1.1E-37 T 14-10-2018 YP_1451 22fe0360d3726d946b7596653d0c8be2 466 SUPERFAMILY SSF103473 34 462 8.89E-70 T 14-10-2018 IPR036259 MFS transporter superfamily YP_1451 22fe0360d3726d946b7596653d0c8be2 466 Gene3D G3DSA:1.20.1250.20 265 458 1.8E-17 T 14-10-2018 YP_1451 22fe0360d3726d946b7596653d0c8be2 466 Pfam PF07690 Major Facilitator Superfamily 59 420 1.6E-36 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_2601 a0740b757a5507a148c354a972854a00 415 Pfam PF07350 Protein of unknown function (DUF1479) 8 412 2.2E-147 T 14-10-2018 IPR010856 Protein of unknown function DUF1479 YP_2601 a0740b757a5507a148c354a972854a00 415 SUPERFAMILY SSF51197 3 413 2.84E-153 T 14-10-2018 YP_2601 a0740b757a5507a148c354a972854a00 415 Gene3D G3DSA:2.60.120.330 1 415 5.0E-169 T 14-10-2018 IPR027443 Isopenicillin N synthase-like YP_1753 c5b54859a9eb4bb832edea58d14704df 188 Pfam PF05433 Glycine zipper 2TM domain 82 122 2.7E-10 T 14-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 YP_2277 4494aed2421a8ddc8937db4b437f1e7c 326 Gene3D G3DSA:3.40.190.10 117 302 7.0E-33 T 14-10-2018 YP_2277 4494aed2421a8ddc8937db4b437f1e7c 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 61 72 9.8E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2277 4494aed2421a8ddc8937db4b437f1e7c 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 61 9.8E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2277 4494aed2421a8ddc8937db4b437f1e7c 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 9.8E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2277 4494aed2421a8ddc8937db4b437f1e7c 326 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 25 81 2.2E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2277 4494aed2421a8ddc8937db4b437f1e7c 326 Pfam PF03466 LysR substrate binding domain 111 306 2.4E-20 T 14-10-2018 IPR005119 LysR, substrate-binding YP_2277 4494aed2421a8ddc8937db4b437f1e7c 326 Gene3D G3DSA:3.40.190.10 177 277 7.0E-33 T 14-10-2018 YP_2277 4494aed2421a8ddc8937db4b437f1e7c 326 SUPERFAMILY SSF46785 20 103 3.3E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_2277 4494aed2421a8ddc8937db4b437f1e7c 326 SUPERFAMILY SSF53850 111 310 5.97E-24 T 14-10-2018 YP_2277 4494aed2421a8ddc8937db4b437f1e7c 326 Gene3D G3DSA:1.10.10.10 23 114 1.6E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2858 2f2cf99d5ccaaad756f56d2c01e76dd1 302 Gene3D G3DSA:3.40.190.10 163 262 1.2E-60 T 14-10-2018 YP_2858 2f2cf99d5ccaaad756f56d2c01e76dd1 302 Gene3D G3DSA:1.10.10.10 3 91 1.7E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_2858 2f2cf99d5ccaaad756f56d2c01e76dd1 302 Pfam PF03466 LysR substrate binding domain 88 291 3.5E-40 T 14-10-2018 IPR005119 LysR, substrate-binding YP_2858 2f2cf99d5ccaaad756f56d2c01e76dd1 302 SUPERFAMILY SSF46785 5 107 4.24E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_2858 2f2cf99d5ccaaad756f56d2c01e76dd1 302 Gene3D G3DSA:3.40.190.10 92 289 1.2E-60 T 14-10-2018 YP_2858 2f2cf99d5ccaaad756f56d2c01e76dd1 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 3.2E-15 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_2858 2f2cf99d5ccaaad756f56d2c01e76dd1 302 SUPERFAMILY SSF53850 89 295 4.71E-43 T 14-10-2018 YP_3601 05562fe16a978ff22cee7c73b2d5b5ac 145 Pfam PF13924 Lipocalin-like domain 7 143 4.1E-45 T 14-10-2018 IPR024311 Lipocalin-like domain YP_0365 aa299cce7a04f60d87eec6739aac6736 187 SUPERFAMILY SSF81342 10 183 7.14E-25 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 YP_0365 aa299cce7a04f60d87eec6739aac6736 187 Pfam PF01292 Prokaryotic cytochrome b561 16 183 3.2E-19 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 YP_0344 fc46ed3cc4815c9df8fea8d5b8852b36 256 SMART SM00062 34 256 1.9E-31 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_0344 fc46ed3cc4815c9df8fea8d5b8852b36 256 Gene3D G3DSA:3.40.190.10 121 212 5.6E-67 T 14-10-2018 YP_0344 fc46ed3cc4815c9df8fea8d5b8852b36 256 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 241 1.7E-40 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_0344 fc46ed3cc4815c9df8fea8d5b8852b36 256 SUPERFAMILY SSF53850 3 245 2.57E-45 T 14-10-2018 YP_0344 fc46ed3cc4815c9df8fea8d5b8852b36 256 Gene3D G3DSA:3.40.190.10 27 243 5.6E-67 T 14-10-2018 YP_1746 f86abf1752e1c8ea365bbf35274ac528 306 Gene3D G3DSA:1.10.3720.10 24 297 3.6E-63 T 14-10-2018 IPR035906 MetI-like superfamily YP_1746 f86abf1752e1c8ea365bbf35274ac528 306 SUPERFAMILY SSF161098 30 306 6.54E-71 T 14-10-2018 IPR035906 MetI-like superfamily YP_1746 f86abf1752e1c8ea365bbf35274ac528 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 125 300 2.6E-18 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_3406 669b5f573b6509be82d6b919542ec9f9 214 Pfam PF00419 Fimbrial protein 61 213 8.8E-15 T 14-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YP_3406 669b5f573b6509be82d6b919542ec9f9 214 Gene3D G3DSA:2.60.40.1090 57 214 2.0E-33 T 14-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YP_3406 669b5f573b6509be82d6b919542ec9f9 214 SUPERFAMILY SSF49401 61 214 4.23E-36 T 14-10-2018 IPR008966 Adhesion domain superfamily YP_1608 75b42aeff62bbc961007acde9f3ce422 181 Gene3D G3DSA:2.60.40.1220 83 181 1.2E-26 T 14-10-2018 YP_1608 75b42aeff62bbc961007acde9f3ce422 181 SUPERFAMILY SSF81296 83 181 8.4E-27 T 14-10-2018 IPR014756 Immunoglobulin E-set YP_1608 75b42aeff62bbc961007acde9f3ce422 181 Pfam PF04234 CopC domain 84 180 8.5E-24 T 14-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 YP_2286 802c1544b75e4351c12f4416151da93e 1095 TIGRFAM TIGR02562 cas3_yersinia: CRISPR-associated helicase Cas3, subtype I-F/YPEST 1 1091 0.0 T 14-10-2018 IPR013395 Helicase Cas3, CRISPR-associated, Yersinia-type YP_2286 802c1544b75e4351c12f4416151da93e 1095 Gene3D G3DSA:1.10.3210.30 89 220 4.0E-9 T 14-10-2018 IPR038257 CRISPR-associated Cas3-type HD domain superfamily YP_2286 802c1544b75e4351c12f4416151da93e 1095 SUPERFAMILY SSF52540 430 872 1.58E-17 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_1828 10872f65d1e5d1756b3390f7b6e2f987 338 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 233 4.0E-33 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YP_1828 10872f65d1e5d1756b3390f7b6e2f987 338 Gene3D G3DSA:3.40.50.720 1 334 5.7E-63 T 14-10-2018 YP_1828 10872f65d1e5d1756b3390f7b6e2f987 338 SUPERFAMILY SSF51735 1 330 8.19E-62 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3345 c2cebe239815314cb8315f1541961456 165 Pfam PF06092 Enterobacterial putative membrane protein (DUF943) 3 162 1.5E-56 T 14-10-2018 IPR010351 Protein of unknown function DUF943 YP_pMT054 106e79ea5946d6135d47d91718f0ece2 340 Pfam PF09084 NMT1/THI5 like 46 251 3.3E-19 T 14-10-2018 IPR015168 SsuA/THI5-like YP_pMT054 106e79ea5946d6135d47d91718f0ece2 340 Gene3D G3DSA:3.40.190.10 44 326 2.1E-43 T 14-10-2018 YP_pMT054 106e79ea5946d6135d47d91718f0ece2 340 Gene3D G3DSA:3.40.190.10 118 217 2.1E-43 T 14-10-2018 YP_pMT054 106e79ea5946d6135d47d91718f0ece2 340 SUPERFAMILY SSF53850 39 265 1.48E-31 T 14-10-2018 YP_pMT054 106e79ea5946d6135d47d91718f0ece2 340 SMART SM00062 44 253 4.2E-30 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_0883 b4ba961c23ecb557d61614e20137cee1 382 Pfam PF12639 DNase/tRNase domain of colicin-like bacteriocin 278 349 1.3E-6 T 14-10-2018 YP_0883 b4ba961c23ecb557d61614e20137cee1 382 SUPERFAMILY SSF54060 245 348 3.06E-24 T 14-10-2018 YP_0883 b4ba961c23ecb557d61614e20137cee1 382 PIRSF PIRSF011452 1 382 9.4E-223 T 14-10-2018 IPR016583 Uncharacterised conserved protein UCP011452, HNH endonuclease domain-type YP_3835 a2065432b15da2d312417b6986aadaf1 188 Pfam PF03968 OstA-like protein 42 153 4.1E-28 T 14-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal YP_3835 a2065432b15da2d312417b6986aadaf1 188 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 12 172 25.31 T 14-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 YP_3835 a2065432b15da2d312417b6986aadaf1 188 Gene3D G3DSA:2.60.450.10 32 169 4.8E-49 T 14-10-2018 YP_3835 a2065432b15da2d312417b6986aadaf1 188 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 32 171 8.7E-48 T 14-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 YP_1719 2131f33d8f4e441a4d982231b27e80cb 79 ProDom PD060427 YEBV CYTOPLASMIC Y1856 ESCHERICHIA ECS2546 YPO1694 COLI STY1982 SIMILAR 3 78 3.0E-39 T 14-10-2018 IPR009950 Protein of unknown function DUF1480 YP_1719 2131f33d8f4e441a4d982231b27e80cb 79 Pfam PF07351 Protein of unknown function (DUF1480) 1 78 2.5E-43 T 14-10-2018 IPR009950 Protein of unknown function DUF1480 YP_2824 2ca3e917b4fe92a51ed98cea490cbb2e 147 Gene3D G3DSA:3.90.1010.10 1 144 1.1E-49 T 14-10-2018 YP_2824 2ca3e917b4fe92a51ed98cea490cbb2e 147 SUPERFAMILY SSF82649 3 144 1.2E-45 T 14-10-2018 YP_2824 2ca3e917b4fe92a51ed98cea490cbb2e 147 Pfam PF02657 Fe-S metabolism associated domain 18 138 4.8E-40 T 14-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like YP_2824 2ca3e917b4fe92a51ed98cea490cbb2e 147 TIGRFAM TIGR03391 FeS_syn_CsdE: cysteine desulfurase, sulfur acceptor subunit CsdE 3 141 1.1E-78 T 14-10-2018 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE YP_0165 d42293fbb37b93fc37b428b19f5dcd96 394 SUPERFAMILY SSF103473 4 389 1.57E-38 T 14-10-2018 IPR036259 MFS transporter superfamily YP_0165 d42293fbb37b93fc37b428b19f5dcd96 394 Gene3D G3DSA:1.20.1250.20 2 188 9.2E-16 T 14-10-2018 YP_0165 d42293fbb37b93fc37b428b19f5dcd96 394 Gene3D G3DSA:1.20.1250.20 206 388 2.6E-20 T 14-10-2018 YP_0165 d42293fbb37b93fc37b428b19f5dcd96 394 Pfam PF07690 Major Facilitator Superfamily 15 321 2.7E-21 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_0165 d42293fbb37b93fc37b428b19f5dcd96 394 Hamap MF_01044 Protein TsgA [tsgA]. 1 390 28.778 T 14-10-2018 IPR023528 Major facilitator superfamily transporter, TsgA YP_2294 f290d5eacfb6173ac8d898a7cb02c114 274 Gene3D G3DSA:1.10.3720.10 1 263 5.6E-57 T 14-10-2018 IPR035906 MetI-like superfamily YP_2294 f290d5eacfb6173ac8d898a7cb02c114 274 SUPERFAMILY SSF161098 2 270 4.21E-57 T 14-10-2018 IPR035906 MetI-like superfamily YP_2294 f290d5eacfb6173ac8d898a7cb02c114 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 269 2.2E-13 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_0700 dc87ff17e4cb656d9527b16afe02a46d 75 Pfam PF04400 (Na+)-NQR maturation NqrM 23 65 1.7E-22 T 14-10-2018 IPR007495 (Na+)-NQR maturation factor NqrM YP_3230 b3d46fdd4345f7111df1a882dc327792 106 Pfam PF08850 Domain of unknown function (DUF1820) 7 99 1.2E-40 T 14-10-2018 IPR014949 Protein of unknown function DUF1820 YP_3230 b3d46fdd4345f7111df1a882dc327792 106 PIRSF PIRSF028538 1 106 9.2E-44 T 14-10-2018 IPR014949 Protein of unknown function DUF1820 YP_2270 1bdcb837152ffa6dda53e60c21580649 352 Pfam PF01594 AI-2E family transporter 14 327 4.7E-71 T 14-10-2018 IPR002549 Transmembrane protein TqsA-like YP_0755 299d19dceef93ef020d8030047eff0bf 306 Pfam PF00348 Polyprenyl synthetase 38 278 1.5E-56 T 14-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 YP_0755 299d19dceef93ef020d8030047eff0bf 306 Gene3D G3DSA:1.10.600.10 8 306 8.2E-106 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily YP_0755 299d19dceef93ef020d8030047eff0bf 306 SUPERFAMILY SSF48576 9 290 4.32E-86 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily YP_0755 299d19dceef93ef020d8030047eff0bf 306 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 222 234 - T 14-10-2018 IPR033749 Polyprenyl synthetase, conserved site YP_0755 299d19dceef93ef020d8030047eff0bf 306 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 88 104 - T 14-10-2018 IPR033749 Polyprenyl synthetase, conserved site YP_1429 afc53b3e7143e58ba863fec0e28986bc 297 Gene3D G3DSA:3.90.550.10 2 297 3.1E-79 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_1429 afc53b3e7143e58ba863fec0e28986bc 297 SUPERFAMILY SSF53448 1 289 4.96E-57 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_1429 afc53b3e7143e58ba863fec0e28986bc 297 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 5 273 3.6E-102 T 14-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 YP_1429 afc53b3e7143e58ba863fec0e28986bc 297 Pfam PF00483 Nucleotidyl transferase 5 252 6.9E-22 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 YP_1356 7a5489e2c88a5f5d293e1709d1d17f51 167 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 6 160 2.3E-53 T 14-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YP_1356 7a5489e2c88a5f5d293e1709d1d17f51 167 PIRSF PIRSF028301 1 166 7.4E-56 T 14-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YP_1356 7a5489e2c88a5f5d293e1709d1d17f51 167 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 9 159 9.6E-57 T 14-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YP_0559 c332cb7528967d202c302a4238848fcf 578 Gene3D G3DSA:3.10.20.310 102 189 4.8E-30 T 14-10-2018 YP_0559 c332cb7528967d202c302a4238848fcf 578 Pfam PF07244 Surface antigen variable number repeat 190 251 3.1E-7 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 YP_0559 c332cb7528967d202c302a4238848fcf 578 Pfam PF01103 Surface antigen 341 575 4.8E-31 T 14-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 YP_0559 c332cb7528967d202c302a4238848fcf 578 Pfam PF17243 POTRA domain TamA domain 1 26 100 2.4E-20 T 14-10-2018 IPR035243 TamA, POTRA domain 1 YP_0559 c332cb7528967d202c302a4238848fcf 578 Gene3D G3DSA:3.10.20.310 190 266 2.8E-25 T 14-10-2018 YP_0559 c332cb7528967d202c302a4238848fcf 578 Gene3D G3DSA:3.10.20.310 21 101 5.4E-31 T 14-10-2018 YP_0559 c332cb7528967d202c302a4238848fcf 578 Gene3D G3DSA:2.40.160.50 267 578 6.6E-121 T 14-10-2018 YP_3014 0657332377066f49ee7b237659b82455 359 SUPERFAMILY SSF53807 52 333 9.03E-44 T 14-10-2018 YP_3014 0657332377066f49ee7b237659b82455 359 Pfam PF01497 Periplasmic binding protein 75 321 5.7E-21 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain YP_3014 0657332377066f49ee7b237659b82455 359 Gene3D G3DSA:3.40.50.1980 172 352 8.2E-62 T 14-10-2018 YP_3014 0657332377066f49ee7b237659b82455 359 Gene3D G3DSA:3.40.50.1980 54 171 5.6E-28 T 14-10-2018 YP_2668 db42b06b84c28839747feb4283f5e185 182 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 168 7.7E-34 T 14-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase YP_2936 4d61e68a9bedfb3be8bb42b33b01a863 589 Pfam PF04632 Fusaric acid resistance protein family 237 480 1.8E-25 T 14-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 YP_1375 44a1695fe1a380d00eaf46ade5a3883c 587 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 6 580 3.8E-173 T 14-10-2018 IPR010272 Type VI secretion system, TssF-like YP_1375 44a1695fe1a380d00eaf46ade5a3883c 587 Pfam PF05947 Type VI secretion system, TssF 6 584 1.3E-189 T 14-10-2018 IPR010272 Type VI secretion system, TssF-like YP_1375 44a1695fe1a380d00eaf46ade5a3883c 587 PIRSF PIRSF028304 1 586 1.5E-161 T 14-10-2018 IPR010272 Type VI secretion system, TssF-like YP_0632 5ddf0afb3163eba50f86daa75c291713 233 Gene3D G3DSA:3.40.50.300 1 232 8.6E-71 T 14-10-2018 YP_0632 5ddf0afb3163eba50f86daa75c291713 233 SUPERFAMILY SSF52540 1 227 2.05E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0632 5ddf0afb3163eba50f86daa75c291713 233 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_0632 5ddf0afb3163eba50f86daa75c291713 233 SMART SM00382 27 215 2.6E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0632 5ddf0afb3163eba50f86daa75c291713 233 Pfam PF00005 ABC transporter 19 166 2.1E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_2593 aa28a3c8322647c6b904bed9d3ea6032 224 Gene3D G3DSA:1.10.3480.10 30 224 1.0E-39 T 14-10-2018 YP_2593 aa28a3c8322647c6b904bed9d3ea6032 224 SUPERFAMILY SSF89155 31 223 3.79E-48 T 14-10-2018 IPR036411 TorD-like superfamily YP_2593 aa28a3c8322647c6b904bed9d3ea6032 224 PIRSF PIRSF004690 28 224 1.4E-36 T 14-10-2018 IPR026269 Tat proofreading chaperone DmsD-type YP_2593 aa28a3c8322647c6b904bed9d3ea6032 224 Pfam PF02613 Nitrate reductase delta subunit 72 180 2.0E-18 T 14-10-2018 IPR020945 DMSO/Nitrate reductase chaperone YP_3095 5acf6fe22513978049f2a1098697eb3e 196 Pfam PF04222 Protein of unknown function (DUF416) 5 193 1.4E-76 T 14-10-2018 IPR007338 Protein of unknown function DUF416 YP_3095 5acf6fe22513978049f2a1098697eb3e 196 Gene3D G3DSA:1.20.1590.10 3 194 5.2E-64 T 14-10-2018 IPR023381 YP001051499.1-like domain superfamily YP_1328 9f8529545b938acaeb805bcbcc45b3cb 240 Pfam PF04994 TfoX C-terminal domain 148 225 1.0E-22 T 14-10-2018 IPR007077 TfoX, C-terminal YP_1328 9f8529545b938acaeb805bcbcc45b3cb 240 Gene3D G3DSA:1.10.150.20 145 233 2.3E-20 T 14-10-2018 YP_1328 9f8529545b938acaeb805bcbcc45b3cb 240 Gene3D G3DSA:3.30.1460.30 34 137 8.7E-28 T 14-10-2018 YP_1328 9f8529545b938acaeb805bcbcc45b3cb 240 SUPERFAMILY SSF159894 45 135 1.36E-27 T 14-10-2018 YP_1328 9f8529545b938acaeb805bcbcc45b3cb 240 PIRSF PIRSF028788 30 234 1.1E-60 T 14-10-2018 IPR026256 Transcriptional regulator, TfoX/Sxy-type YP_1328 9f8529545b938acaeb805bcbcc45b3cb 240 Pfam PF04993 TfoX N-terminal domain 47 134 2.7E-26 T 14-10-2018 IPR007076 TfoX, N-terminal YP_2181 572ee641a8e2ec99672cc29834a9b19d 81 Gene3D G3DSA:1.20.5.190 25 80 9.5E-31 T 14-10-2018 YP_2181 572ee641a8e2ec99672cc29834a9b19d 81 SUPERFAMILY SSF58042 27 76 2.35E-22 T 14-10-2018 YP_2181 572ee641a8e2ec99672cc29834a9b19d 81 Pfam PF04728 Lipoprotein leucine-zipper 29 81 1.5E-24 T 14-10-2018 IPR006817 Lipoprotein leucine-zipper GO:0019867 YP_2181 572ee641a8e2ec99672cc29834a9b19d 81 PIRSF PIRSF002855 4 81 1.1E-28 T 14-10-2018 IPR016367 Murein-lipoprotein YP_0569 abbeebf79cc8433f91ab753463675bde 133 Gene3D G3DSA:1.10.10.10 19 92 2.1E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0569 abbeebf79cc8433f91ab753463675bde 133 SUPERFAMILY SSF46955 21 91 2.29E-23 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily YP_0569 abbeebf79cc8433f91ab753463675bde 133 Pfam PF02316 Mu DNA-binding domain 27 79 1.2E-13 T 14-10-2018 IPR003314 Mu-type HTH domain GO:0003677 YP_2100 108a0c77a0c84d164c2aba99aadf99af 118 Gene3D G3DSA:3.30.70.1720 13 113 2.4E-8 T 14-10-2018 YP_2100 108a0c77a0c84d164c2aba99aadf99af 118 SUPERFAMILY SSF81298 2 108 3.53E-37 T 14-10-2018 IPR035099 Anthrax toxin, edema factor, C-terminal KEGG: 00230+4.6.1.1 YP_3530 b5e75c73ffe2f03c2f38a9536e5d84ba 165 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 5 153 4.7E-51 T 14-10-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 YP_3530 b5e75c73ffe2f03c2f38a9536e5d84ba 165 SUPERFAMILY SSF52728 5 162 8.63E-47 T 14-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 YP_3530 b5e75c73ffe2f03c2f38a9536e5d84ba 165 Pfam PF03830 PTS system sorbose subfamily IIB component 6 154 1.7E-47 T 14-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 YP_3530 b5e75c73ffe2f03c2f38a9536e5d84ba 165 Gene3D G3DSA:3.40.35.10 1 164 2.8E-48 T 14-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 YP_3862 e0f9e073485a596f09e5e76d721197c2 291 Gene3D G3DSA:1.10.10.10 7 96 6.4E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3862 e0f9e073485a596f09e5e76d721197c2 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 65 2.7E-14 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YP_3862 e0f9e073485a596f09e5e76d721197c2 291 SUPERFAMILY SSF46785 9 87 2.72E-15 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3189 b074fa787470256b8392c6bcde71eac0 454 Hamap MF_01003 Probable ECA polymerase [wzyE]. 1 447 38.509 T 14-10-2018 IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 YP_3189 b074fa787470256b8392c6bcde71eac0 454 Pfam PF06899 WzyE protein, O-antigen assembly polymerase 1 442 7.8E-264 T 14-10-2018 IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 YP_2463 578681d76e08ed7b6d926caf2ddf2a55 268 Gene3D G3DSA:1.10.3720.10 60 262 1.4E-19 T 14-10-2018 IPR035906 MetI-like superfamily YP_2463 578681d76e08ed7b6d926caf2ddf2a55 268 SUPERFAMILY SSF161098 65 256 4.97E-24 T 14-10-2018 IPR035906 MetI-like superfamily YP_2463 578681d76e08ed7b6d926caf2ddf2a55 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 261 1.6E-20 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2211 3faa5484b37abb2499dfb8955197610a 184 Gene3D G3DSA:3.40.30.10 1 184 2.5E-63 T 14-10-2018 YP_2211 3faa5484b37abb2499dfb8955197610a 184 Pfam PF00255 Glutathione peroxidase 5 111 8.6E-40 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 YP_2211 3faa5484b37abb2499dfb8955197610a 184 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 14-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 YP_2211 3faa5484b37abb2499dfb8955197610a 184 Hamap MF_02061 Thioredoxin/glutathione peroxidase BtuE [btuE]. 3 184 51.072 T 14-10-2018 IPR033674 Thioredoxin/glutathione peroxidase BtuE KEGG: 00480+1.11.1.15+1.11.1.9|KEGG: 00590+1.11.1.9|MetaCyc: PWY-4081 YP_2211 3faa5484b37abb2499dfb8955197610a 184 PRINTS PR01011 Glutathione peroxidase family signature 23 40 2.6E-18 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 YP_2211 3faa5484b37abb2499dfb8955197610a 184 PRINTS PR01011 Glutathione peroxidase family signature 58 74 2.6E-18 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 YP_2211 3faa5484b37abb2499dfb8955197610a 184 PRINTS PR01011 Glutathione peroxidase family signature 143 152 2.6E-18 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 YP_2211 3faa5484b37abb2499dfb8955197610a 184 PIRSF PIRSF000303 1 184 1.9E-61 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 YP_2211 3faa5484b37abb2499dfb8955197610a 184 SUPERFAMILY SSF52833 4 182 2.76E-54 T 14-10-2018 IPR036249 Thioredoxin-like superfamily YP_1419 1a89ca063a371927abda7ee26095a37a 432 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 3 339 1.4E-116 T 14-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YP_1419 1a89ca063a371927abda7ee26095a37a 432 SUPERFAMILY SSF51905 1 254 2.8E-15 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_1419 1a89ca063a371927abda7ee26095a37a 432 Gene3D G3DSA:3.50.50.60 1 420 1.6E-108 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_0473 4ac842e583554f79fd0efd627fb41598 72 Pfam PF09583 Phage shock protein G (Phageshock_PspG) 1 64 3.0E-25 T 14-10-2018 IPR014318 Phage shock protein, PspG YP_0473 4ac842e583554f79fd0efd627fb41598 72 TIGRFAM TIGR02975 phageshock_pspG: phage shock protein G 2 65 7.7E-29 T 14-10-2018 IPR014318 Phage shock protein, PspG YP_3586 e6110dbf47a55c147b994e2bc0fbf3b4 577 SUPERFAMILY SSF64182 49 466 5.49E-117 T 14-10-2018 IPR038763 DHH phosphoesterase superfamily YP_3586 e6110dbf47a55c147b994e2bc0fbf3b4 577 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 24 573 1.6E-159 T 14-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 YP_3586 e6110dbf47a55c147b994e2bc0fbf3b4 577 Pfam PF01368 DHH family 74 175 5.1E-9 T 14-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YP_3586 e6110dbf47a55c147b994e2bc0fbf3b4 577 Pfam PF02272 DHHA1 domain 322 452 5.7E-27 T 14-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 YP_3586 e6110dbf47a55c147b994e2bc0fbf3b4 577 Gene3D G3DSA:2.40.50.460 459 576 1.4E-7 T 14-10-2018 YP_3586 e6110dbf47a55c147b994e2bc0fbf3b4 577 Gene3D G3DSA:3.90.1640.30 48 326 2.8E-89 T 14-10-2018 YP_3586 e6110dbf47a55c147b994e2bc0fbf3b4 577 Gene3D G3DSA:3.10.310.30 328 458 1.4E-30 T 14-10-2018 YP_0131 96c49f0cd411b5d60007b18ae1d60385 92 SUPERFAMILY SSF159871 6 92 2.62E-24 T 14-10-2018 IPR036275 YdgH-like superfamily YP_0131 96c49f0cd411b5d60007b18ae1d60385 92 Pfam PF07338 Protein of unknown function (DUF1471) 39 92 3.7E-21 T 14-10-2018 IPR010854 Domain of unknown function DUF1471 YP_0131 96c49f0cd411b5d60007b18ae1d60385 92 Gene3D G3DSA:3.30.1660.10 29 92 8.8E-26 T 14-10-2018 IPR025543 Dodecin-like YP_0752 9f85ea1aba9f6537569324de4ee61718 161 Pfam PF04608 Phosphatidylglycerophosphatase A 15 155 8.6E-55 T 14-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 YP_0752 9f85ea1aba9f6537569324de4ee61718 161 SUPERFAMILY SSF101307 8 157 1.14E-50 T 14-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 YP_0752 9f85ea1aba9f6537569324de4ee61718 161 PIRSF PIRSF006162 4 161 5.4E-62 T 14-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 YP_3384 df3829b5a2cf983526dd6a7ec97170c3 424 Pfam PF13535 ATP-grasp domain 154 295 1.2E-13 T 14-10-2018 YP_3384 df3829b5a2cf983526dd6a7ec97170c3 424 Gene3D G3DSA:3.30.470.20 109 417 9.3E-53 T 14-10-2018 YP_3384 df3829b5a2cf983526dd6a7ec97170c3 424 SUPERFAMILY SSF56059 117 318 1.4E-27 T 14-10-2018 YP_2966 65d7b4bb395e33aea26d012dffe96dd0 207 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 27 204 1.3E-52 T 14-10-2018 IPR016476 SH3 domain protein YP_2966 65d7b4bb395e33aea26d012dffe96dd0 207 Gene3D G3DSA:2.30.30.40 21 88 5.3E-7 T 14-10-2018 YP_2966 65d7b4bb395e33aea26d012dffe96dd0 207 SMART SM00287 23 89 5.7E-12 T 14-10-2018 IPR003646 SH3-like domain, bacterial-type YP_2966 65d7b4bb395e33aea26d012dffe96dd0 207 PIRSF PIRSF006158 1 205 2.1E-69 T 14-10-2018 IPR016476 SH3 domain protein YP_2966 65d7b4bb395e33aea26d012dffe96dd0 207 Pfam PF08239 Bacterial SH3 domain 34 81 9.0E-9 T 14-10-2018 IPR003646 SH3-like domain, bacterial-type YP_0862 3907d7aac0dee7b87ffd03ddef3786e0 81 Gene3D G3DSA:1.25.40.590 27 80 1.9E-5 T 14-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily YP_2056 faedc0b27e4880aa41c70de9f640aede 342 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 10 319 3.3E-104 T 14-10-2018 IPR016833 Putative sodium bile acid cotransporter YP_2056 faedc0b27e4880aa41c70de9f640aede 342 PIRSF PIRSF026166 1 335 1.1E-135 T 14-10-2018 IPR016833 Putative sodium bile acid cotransporter YP_2056 faedc0b27e4880aa41c70de9f640aede 342 Gene3D G3DSA:1.20.1530.20 7 327 3.7E-32 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily YP_pCD41 48fd90b9f9e16c7bad551695444c67dd 455 TIGRFAM TIGR02514 type_III_yscP: type III secretion system needle length determinant 331 455 1.4E-42 T 14-10-2018 IPR013354 Type III secretion system needle length determinant, C-terminal domain GO:0009405 YP_pCD41 48fd90b9f9e16c7bad551695444c67dd 455 Pfam PF02120 Flagellar hook-length control protein FliK 368 439 6.3E-9 T 14-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal YP_1714 5dd76139a3c04c715fc64401c14f9d11 406 SUPERFAMILY SSF51556 66 366 2.86E-86 T 14-10-2018 IPR032466 Metal-dependent hydrolase YP_1714 5dd76139a3c04c715fc64401c14f9d11 406 Gene3D G3DSA:2.30.40.10 15 402 2.9E-161 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YP_1714 5dd76139a3c04c715fc64401c14f9d11 406 SUPERFAMILY SSF51338 6 404 1.68E-27 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YP_1714 5dd76139a3c04c715fc64401c14f9d11 406 Hamap MF_00372 Imidazolonepropionase [hutI]. 8 405 42.711 T 14-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YP_1714 5dd76139a3c04c715fc64401c14f9d11 406 Pfam PF01979 Amidohydrolase family 64 402 1.2E-14 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 YP_1714 5dd76139a3c04c715fc64401c14f9d11 406 Gene3D G3DSA:3.20.20.140 67 365 2.9E-161 T 14-10-2018 YP_1714 5dd76139a3c04c715fc64401c14f9d11 406 TIGRFAM TIGR01224 hutI: imidazolonepropionase 28 404 2.9E-170 T 14-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YP_0887 809da73c5753701a3e950a595ac8c761 246 Gene3D G3DSA:3.40.50.10490 80 246 3.6E-31 T 14-10-2018 YP_0887 809da73c5753701a3e950a595ac8c761 246 Pfam PF01418 Helix-turn-helix domain, rpiR family 8 70 1.4E-14 T 14-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 YP_0887 809da73c5753701a3e950a595ac8c761 246 Pfam PF01380 SIS domain 108 218 1.9E-15 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YP_0887 809da73c5753701a3e950a595ac8c761 246 Gene3D G3DSA:1.10.10.10 3 71 1.5E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0887 809da73c5753701a3e950a595ac8c761 246 SUPERFAMILY SSF53697 86 230 3.4E-31 T 14-10-2018 YP_0887 809da73c5753701a3e950a595ac8c761 246 SUPERFAMILY SSF46689 6 72 2.33E-20 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_3907 8a5e44d9b44a98dcb06dfeab733db6ab 448 Pfam PF13449 Esterase-like activity of phytase 90 421 7.9E-66 T 14-10-2018 IPR027372 Phytase-like domain YP_3907 8a5e44d9b44a98dcb06dfeab733db6ab 448 SUPERFAMILY SSF63829 93 295 4.97E-6 T 14-10-2018 YP_2844 560a87fba73eee278c40ffce722e55e0 196 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 21 37 7.5E-5 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site YP_2844 560a87fba73eee278c40ffce722e55e0 196 Gene3D G3DSA:3.55.40.10 53 193 3.0E-5 T 14-10-2018 YP_2844 560a87fba73eee278c40ffce722e55e0 196 Pfam PF07963 Prokaryotic N-terminal methylation motif 20 37 5.2E-5 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site YP_2844 560a87fba73eee278c40ffce722e55e0 196 PRINTS PR00885 Bacterial general secretion pathway protein H signature 19 33 8.8E-7 T 14-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 YP_2844 560a87fba73eee278c40ffce722e55e0 196 PRINTS PR00885 Bacterial general secretion pathway protein H signature 155 170 8.8E-7 T 14-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 YP_2844 560a87fba73eee278c40ffce722e55e0 196 PRINTS PR00885 Bacterial general secretion pathway protein H signature 34 48 8.8E-7 T 14-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 YP_2385 41108ec13223201b390896f4f95286c2 230 SUPERFAMILY SSF141868 14 226 3.92E-21 T 14-10-2018 IPR035919 EAL domain superfamily YP_2385 41108ec13223201b390896f4f95286c2 230 SMART SM00052 1 223 4.0E-6 T 14-10-2018 IPR001633 EAL domain YP_2385 41108ec13223201b390896f4f95286c2 230 Gene3D G3DSA:3.20.20.450 1 227 1.1E-41 T 14-10-2018 IPR035919 EAL domain superfamily YP_2385 41108ec13223201b390896f4f95286c2 230 Pfam PF00563 EAL domain 15 218 7.5E-14 T 14-10-2018 IPR001633 EAL domain YP_0944 7c7600da93ad00477e26b02f916f59b1 285 PIRSF PIRSF030125 7 285 6.8E-110 T 14-10-2018 IPR016946 Uncharacterised conserved protein UCP030125 YP_0944 7c7600da93ad00477e26b02f916f59b1 285 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 175 273 4.6E-7 T 14-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 YP_0435 57086288f292ae1d29412d7fcd401580 334 Pfam PF01032 FecCD transport family 17 327 4.5E-94 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YP_0435 57086288f292ae1d29412d7fcd401580 334 Gene3D G3DSA:1.10.3470.10 4 334 9.8E-135 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_0435 57086288f292ae1d29412d7fcd401580 334 SUPERFAMILY SSF81345 5 327 4.84E-87 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_3214 efacd3dde81d132b4963149daf0bc2ad 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 103 119 6.1E-84 T 14-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YP_3214 efacd3dde81d132b4963149daf0bc2ad 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 261 281 6.1E-84 T 14-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YP_3214 efacd3dde81d132b4963149daf0bc2ad 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 126 145 6.1E-84 T 14-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YP_3214 efacd3dde81d132b4963149daf0bc2ad 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 206 224 6.1E-84 T 14-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YP_3214 efacd3dde81d132b4963149daf0bc2ad 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 171 189 6.1E-84 T 14-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YP_3214 efacd3dde81d132b4963149daf0bc2ad 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 156 170 6.1E-84 T 14-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YP_3214 efacd3dde81d132b4963149daf0bc2ad 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 81 98 6.1E-84 T 14-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YP_3214 efacd3dde81d132b4963149daf0bc2ad 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 239 256 6.1E-84 T 14-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YP_3214 efacd3dde81d132b4963149daf0bc2ad 292 Gene3D G3DSA:2.40.230.10 33 292 3.9E-106 T 14-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YP_3214 efacd3dde81d132b4963149daf0bc2ad 292 SUPERFAMILY SSF56931 39 291 1.83E-94 T 14-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YP_3214 efacd3dde81d132b4963149daf0bc2ad 292 Pfam PF02253 Phospholipase A1 43 288 9.4E-99 T 14-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YP_0625 0487552cc358da8ceedc81ef5e8a5e37 392 PIRSF PIRSF007313 1 360 1.9E-162 T 14-10-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 YP_0625 0487552cc358da8ceedc81ef5e8a5e37 392 Pfam PF05861 Bacterial phosphonate metabolism protein (PhnI) 1 351 4.7E-155 T 14-10-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 YP_0552 4fc8c0112c9ddf0974bb7b35d71cbbbd 221 Pfam PF04405 Domain of Unknown function (DUF542) 5 59 8.0E-20 T 14-10-2018 IPR019903 Repair of iron centres family YP_0552 4fc8c0112c9ddf0974bb7b35d71cbbbd 221 Gene3D G3DSA:1.20.120.520 79 220 3.0E-30 T 14-10-2018 YP_0552 4fc8c0112c9ddf0974bb7b35d71cbbbd 221 TIGRFAM TIGR03652 FeS_repair_RIC: iron-sulfur cluster repair di-iron protein 8 217 1.8E-81 T 14-10-2018 IPR019903 Repair of iron centres family YP_0552 4fc8c0112c9ddf0974bb7b35d71cbbbd 221 Hamap MF_01606 Iron-sulfur cluster repair protein YtfE [ytfE]. 1 221 47.459 T 14-10-2018 IPR023742 Iron-sulfur cluster repair protein YftE GO:0030091 YP_0552 4fc8c0112c9ddf0974bb7b35d71cbbbd 221 Pfam PF01814 Hemerythrin HHE cation binding domain 81 217 6.1E-27 T 14-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 YP_1652 401b74e6ab39dfe19627589db5a92201 386 SUPERFAMILY SSF51735 29 163 5.79E-14 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1652 401b74e6ab39dfe19627589db5a92201 386 PIRSF PIRSF017494 24 383 4.5E-153 T 14-10-2018 IPR010091 Thiazolinyl imide reductase YP_1652 401b74e6ab39dfe19627589db5a92201 386 Gene3D G3DSA:3.30.360.10 150 311 4.7E-133 T 14-10-2018 YP_1652 401b74e6ab39dfe19627589db5a92201 386 TIGRFAM TIGR01761 thiaz-red: thiazolinyl imide reductase 26 368 3.6E-161 T 14-10-2018 IPR010091 Thiazolinyl imide reductase YP_1652 401b74e6ab39dfe19627589db5a92201 386 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 30 146 6.2E-24 T 14-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 YP_1652 401b74e6ab39dfe19627589db5a92201 386 Gene3D G3DSA:3.40.50.720 30 360 4.7E-133 T 14-10-2018 YP_pMT050 fe70dc4c7ebf47802df72aa1ad446cb4 642 SUPERFAMILY SSF52540 5 621 6.49E-34 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pMT050 fe70dc4c7ebf47802df72aa1ad446cb4 642 Pfam PF13476 AAA domain 9 233 1.8E-15 T 14-10-2018 IPR038729 Rad50/SbcC-type AAA domain YP_pMT050 fe70dc4c7ebf47802df72aa1ad446cb4 642 Gene3D G3DSA:3.40.50.300 250 642 4.8E-21 T 14-10-2018 YP_pMT050 fe70dc4c7ebf47802df72aa1ad446cb4 642 Gene3D G3DSA:3.40.50.300 4 249 3.5E-31 T 14-10-2018 YP_1672 c329e43ac2ca9f72cc02bb3fbb60128a 157 SUPERFAMILY SSF49478 39 88 5.89E-7 T 14-10-2018 YP_1672 c329e43ac2ca9f72cc02bb3fbb60128a 157 Gene3D G3DSA:2.60.40.10 29 103 3.7E-8 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_1575 c97e80b8507e87b20637ce2c25c0a26f 122 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 66 121 8.9E-22 T 14-10-2018 IPR012933 HicA mRNA interferase family GO:0003729 YP_1575 c97e80b8507e87b20637ce2c25c0a26f 122 SUPERFAMILY SSF54786 62 122 2.08E-19 T 14-10-2018 YP_1575 c97e80b8507e87b20637ce2c25c0a26f 122 Gene3D G3DSA:3.30.920.30 57 121 1.1E-27 T 14-10-2018 IPR038570 HicA superfamily YP_0657 123bf3c63d361f8b6e0d81e525efa027 113 PIRSF PIRSF034456 8 113 1.4E-58 T 14-10-2018 IPR017028 Uncharacterised conserved protein UCP034456 YP_0657 123bf3c63d361f8b6e0d81e525efa027 113 Pfam PF10043 Predicted periplasmic lipoprotein (DUF2279) 31 109 7.6E-7 T 14-10-2018 IPR018736 Protein of unknown function DUF2279, periplasmic lipoprotein YP_2683 306d2fed28353bcc02958074096a17e9 353 Pfam PF06804 NlpB/DapX lipoprotein 41 344 5.0E-112 T 14-10-2018 IPR010653 NlpB/DapX lipoprotein YP_2683 306d2fed28353bcc02958074096a17e9 353 Gene3D G3DSA:3.30.310.170 228 351 2.0E-49 T 14-10-2018 YP_2683 306d2fed28353bcc02958074096a17e9 353 PIRSF PIRSF026343 10 347 7.9E-114 T 14-10-2018 IPR014524 Outer membrane protein assembly factor BamC YP_2683 306d2fed28353bcc02958074096a17e9 353 Hamap MF_00924 Outer membrane protein assembly factor BamC [bamC]. 10 345 40.118 T 14-10-2018 IPR014524 Outer membrane protein assembly factor BamC YP_2683 306d2fed28353bcc02958074096a17e9 353 Gene3D G3DSA:3.30.530.50 102 214 1.5E-44 T 14-10-2018 YP_1947 e72c6e215394c21158bb1595bef7fff9 511 Pfam PF04293 SpoVR like protein 20 451 1.3E-175 T 14-10-2018 IPR007390 Sporulation stage V, protein R YP_2205 eac49ddf601f6bb057eef2148b2f5434 554 Hamap MF_01165 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase [arnT]. 3 553 43.835 T 14-10-2018 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase GO:0016763 YP_2205 eac49ddf601f6bb057eef2148b2f5434 554 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 11 239 3.9E-38 T 14-10-2018 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 Reactome: R-HSA-5173105 YP_2872 653463b6538c0dcac193641c1c3155d2 175 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 38.062 T 14-10-2018 IPR022927 RNA pyrophosphohydrolase RppH YP_2872 653463b6538c0dcac193641c1c3155d2 175 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YP_2872 653463b6538c0dcac193641c1c3155d2 175 Gene3D G3DSA:3.90.79.10 1 160 4.6E-53 T 14-10-2018 YP_2872 653463b6538c0dcac193641c1c3155d2 175 SUPERFAMILY SSF55811 6 155 4.6E-33 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YP_2872 653463b6538c0dcac193641c1c3155d2 175 PRINTS PR00502 NUDIX hydrolase family signature 47 62 6.2E-8 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YP_2872 653463b6538c0dcac193641c1c3155d2 175 PRINTS PR00502 NUDIX hydrolase family signature 33 47 6.2E-8 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YP_2872 653463b6538c0dcac193641c1c3155d2 175 Pfam PF00293 NUDIX domain 7 146 1.0E-28 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YP_3426 141e72d936e2946ce53c8ebeda3e1b49 362 Gene3D G3DSA:3.40.50.720 9 156 4.4E-14 T 14-10-2018 YP_3426 141e72d936e2946ce53c8ebeda3e1b49 362 SUPERFAMILY SSF51735 10 143 2.42E-17 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_3426 141e72d936e2946ce53c8ebeda3e1b49 362 Pfam PF01370 NAD dependent epimerase/dehydratase family 13 86 2.9E-8 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YP_2164 43004045a45df006aa70e426bd3b8adc 199 Gene3D G3DSA:1.10.357.10 2 199 2.7E-58 T 14-10-2018 YP_2164 43004045a45df006aa70e426bd3b8adc 199 SUPERFAMILY SSF46689 2 77 6.67E-14 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_2164 43004045a45df006aa70e426bd3b8adc 199 Pfam PF16925 Bacterial transcriptional repressor C-terminal 88 186 6.4E-10 T 14-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal YP_2164 43004045a45df006aa70e426bd3b8adc 199 SUPERFAMILY SSF48498 85 196 3.86E-22 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YP_2164 43004045a45df006aa70e426bd3b8adc 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 56 3.1E-7 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YP_3209 d0f955fffde572a951f12bc67d6a3183 405 Gene3D G3DSA:3.40.50.12020 2 175 7.0E-56 T 14-10-2018 YP_3209 d0f955fffde572a951f12bc67d6a3183 405 Hamap MF_00677 UPF0261 protein . 2 402 53.653 T 14-10-2018 IPR008322 Uncharacterised protein family UPF0261 YP_3209 d0f955fffde572a951f12bc67d6a3183 405 PIRSF PIRSF033271 1 403 5.4E-204 T 14-10-2018 IPR008322 Uncharacterised protein family UPF0261 YP_3209 d0f955fffde572a951f12bc67d6a3183 405 Pfam PF06792 Uncharacterised protein family (UPF0261) 4 399 1.3E-158 T 14-10-2018 IPR008322 Uncharacterised protein family UPF0261 YP_3209 d0f955fffde572a951f12bc67d6a3183 405 Gene3D G3DSA:3.40.50.12030 183 402 3.2E-85 T 14-10-2018 YP_1425 2d85432bbd4e10d0ad687200dbc02dc0 372 SUPERFAMILY SSF53807 74 355 1.1E-46 T 14-10-2018 YP_1425 2d85432bbd4e10d0ad687200dbc02dc0 372 Gene3D G3DSA:3.40.50.1980 63 201 7.6E-37 T 14-10-2018 YP_1425 2d85432bbd4e10d0ad687200dbc02dc0 372 Pfam PF01497 Periplasmic binding protein 85 324 3.2E-21 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain YP_1425 2d85432bbd4e10d0ad687200dbc02dc0 372 Gene3D G3DSA:3.40.50.1980 207 364 4.1E-38 T 14-10-2018 YP_2351 11d2ff9450d6074815c5cad73c088fe5 178 Gene3D G3DSA:3.40.50.300 2 168 6.9E-65 T 14-10-2018 YP_2351 11d2ff9450d6074815c5cad73c088fe5 178 SUPERFAMILY SSF52540 2 166 2.91E-28 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2351 11d2ff9450d6074815c5cad73c088fe5 178 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 6 165 8.0E-65 T 14-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 YP_2351 11d2ff9450d6074815c5cad73c088fe5 178 Pfam PF01202 Shikimate kinase 12 166 6.7E-11 T 14-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YP_0954 6311e16018da5ceb4ef42f6270ac1ee3 290 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 37 281 2.5E-91 T 14-10-2018 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 YP_0954 6311e16018da5ceb4ef42f6270ac1ee3 290 SMART SM00382 62 270 1.2E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_0954 6311e16018da5ceb4ef42f6270ac1ee3 290 SUPERFAMILY SSF52540 36 273 1.69E-57 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0954 6311e16018da5ceb4ef42f6270ac1ee3 290 Pfam PF00005 ABC transporter 53 214 1.2E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_0954 6311e16018da5ceb4ef42f6270ac1ee3 290 Gene3D G3DSA:3.40.50.300 33 284 1.2E-61 T 14-10-2018 YP_0954 6311e16018da5ceb4ef42f6270ac1ee3 290 ProSitePatterns PS00211 ABC transporters family signature. 186 200 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_2575 bd7f7bc2cb811613ee8e2e10068065a0 341 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 23 321 7.9E-96 T 14-10-2018 IPR010732 Type VI secretion, TssG-like YP_2575 bd7f7bc2cb811613ee8e2e10068065a0 341 Pfam PF06996 Type VI secretion, TssG 23 320 1.2E-82 T 14-10-2018 IPR010732 Type VI secretion, TssG-like YP_pCD57 6da852beeb0b91da691411baa4fa11b0 107 Pfam PF13610 DDE domain 11 94 1.5E-26 T 14-10-2018 IPR032874 DDE domain YP_1253 44bd1f2422da2a8bfc1ada109198c178 378 SUPERFAMILY SSF53807 39 346 7.06E-40 T 14-10-2018 YP_1253 44bd1f2422da2a8bfc1ada109198c178 378 Pfam PF01497 Periplasmic binding protein 98 322 6.4E-28 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain YP_1253 44bd1f2422da2a8bfc1ada109198c178 378 Gene3D G3DSA:3.40.50.1980 38 375 3.2E-78 T 14-10-2018 YP_2281 836574fa37abd3e91d928173432b81e1 184 Pfam PF09618 CRISPR-associated protein (Cas_Csy4) 4 184 6.9E-65 T 14-10-2018 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST GO:0004519|GO:0043571 YP_2281 836574fa37abd3e91d928173432b81e1 184 Gene3D G3DSA:3.30.70.2540 1 184 1.2E-60 T 14-10-2018 YP_2281 836574fa37abd3e91d928173432b81e1 184 TIGRFAM TIGR02563 cas_Csy4: CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST 3 184 1.8E-70 T 14-10-2018 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST GO:0004519|GO:0043571 YP_1064 5684cc048847bf159d4cdcc58c0c8772 66 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 6 54 6.6E-22 T 14-10-2018 IPR010260 DNA-binding transcriptional activator AlpA YP_0682 dde86c03158349e4d24c2075932fef58 340 Pfam PF02796 Helix-turn-helix domain of resolvase 9 40 1.1E-8 T 14-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 YP_0682 dde86c03158349e4d24c2075932fef58 340 SUPERFAMILY SSF53098 118 290 2.5E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_0682 dde86c03158349e4d24c2075932fef58 340 Pfam PF00665 Integrase core domain 118 243 1.8E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_0682 dde86c03158349e4d24c2075932fef58 340 SUPERFAMILY SSF46689 12 84 8.96E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_0682 dde86c03158349e4d24c2075932fef58 340 Gene3D G3DSA:1.10.10.60 7 40 3.2E-8 T 14-10-2018 YP_2161 668b37b427ecda904b6edcb3c8427209 298 Gene3D G3DSA:3.20.20.100 1 298 6.7E-107 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_2161 668b37b427ecda904b6edcb3c8427209 298 Pfam PF00248 Aldo/keto reductase family 17 291 7.3E-61 T 14-10-2018 IPR023210 NADP-dependent oxidoreductase domain YP_2161 668b37b427ecda904b6edcb3c8427209 298 PRINTS PR00069 Aldo-keto reductase signature 225 249 3.0E-8 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_2161 668b37b427ecda904b6edcb3c8427209 298 PRINTS PR00069 Aldo-keto reductase signature 112 130 3.0E-8 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_2161 668b37b427ecda904b6edcb3c8427209 298 PRINTS PR00069 Aldo-keto reductase signature 143 160 3.0E-8 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YP_2161 668b37b427ecda904b6edcb3c8427209 298 SUPERFAMILY SSF51430 8 295 1.83E-72 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_1574 dc5dd5a3ebd53ea12aad493a6b67e2c0 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 4.3E-29 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_1574 dc5dd5a3ebd53ea12aad493a6b67e2c0 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 4.3E-29 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_1574 dc5dd5a3ebd53ea12aad493a6b67e2c0 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 4.3E-29 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_1574 dc5dd5a3ebd53ea12aad493a6b67e2c0 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 4.3E-29 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_1574 dc5dd5a3ebd53ea12aad493a6b67e2c0 260 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 13 255 3.8E-74 T 14-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 YP_1574 dc5dd5a3ebd53ea12aad493a6b67e2c0 260 Pfam PF01311 Bacterial export proteins, family 1 14 246 1.0E-65 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YP_3828 313991223c73744223e4192ec28329e7 185 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 152 2.1E-54 T 14-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 YP_3828 313991223c73744223e4192ec28329e7 185 Pfam PF02470 MlaD protein 39 116 2.5E-18 T 14-10-2018 IPR003399 Mce/MlaD YP_2051 9768fb0c2de135cb610f4500e2df4c6e 327 PIRSF PIRSF002816 2 326 3.6E-149 T 14-10-2018 IPR026266 L-arabinose-binding periplasmic protein GO:0042882 YP_2051 9768fb0c2de135cb610f4500e2df4c6e 327 SUPERFAMILY SSF53822 26 324 2.88E-67 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_2051 9768fb0c2de135cb610f4500e2df4c6e 327 Gene3D G3DSA:3.40.50.2300 27 308 2.2E-131 T 14-10-2018 YP_2051 9768fb0c2de135cb610f4500e2df4c6e 327 Gene3D G3DSA:3.40.50.2300 132 317 2.2E-131 T 14-10-2018 YP_2051 9768fb0c2de135cb610f4500e2df4c6e 327 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 26 319 1.2E-85 T 14-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain YP_3006 ef3781b6f8cf77e9e07945a272ae8bab 410 SUPERFAMILY SSF52540 179 365 1.72E-8 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3006 ef3781b6f8cf77e9e07945a272ae8bab 410 Gene3D G3DSA:3.40.50.300 180 387 5.6E-10 T 14-10-2018 YP_2220 c6df74213639dc196672a8cf86c775c9 116 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 24 113 3.2E-36 T 14-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 YP_2220 c6df74213639dc196672a8cf86c775c9 116 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 1 115 2.4E-46 T 14-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 YP_2220 c6df74213639dc196672a8cf86c775c9 116 SUPERFAMILY SSF55200 23 115 6.93E-33 T 14-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 YP_2220 c6df74213639dc196672a8cf86c775c9 116 Gene3D G3DSA:3.30.110.10 14 116 9.9E-38 T 14-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 YP_3043 83b0909bb426f1cf1eae9b647ce0a00c 453 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 410 451 1.4E-10 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_3043 83b0909bb426f1cf1eae9b647ce0a00c 453 SUPERFAMILY SSF64518 143 452 8.63E-21 T 14-10-2018 YP_3043 83b0909bb426f1cf1eae9b647ce0a00c 453 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 3 452 1.5E-126 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_3043 83b0909bb426f1cf1eae9b647ce0a00c 453 Pfam PF00460 Flagella basal body rod protein 4 33 5.1E-7 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YP_3043 83b0909bb426f1cf1eae9b647ce0a00c 453 PRINTS PR01005 Flagellar hook-associated protein signature 122 142 4.4E-13 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_3043 83b0909bb426f1cf1eae9b647ce0a00c 453 PRINTS PR01005 Flagellar hook-associated protein signature 155 179 4.4E-13 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_3043 83b0909bb426f1cf1eae9b647ce0a00c 453 PRINTS PR01005 Flagellar hook-associated protein signature 48 70 4.4E-13 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_3043 83b0909bb426f1cf1eae9b647ce0a00c 453 PRINTS PR01005 Flagellar hook-associated protein signature 10 33 4.4E-13 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_3043 83b0909bb426f1cf1eae9b647ce0a00c 453 PRINTS PR01005 Flagellar hook-associated protein signature 444 453 4.4E-13 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_3043 83b0909bb426f1cf1eae9b647ce0a00c 453 PRINTS PR01005 Flagellar hook-associated protein signature 213 231 4.4E-13 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YP_2118 ef70c414d629867e598b12f2a12ddaf1 219 Pfam PF02308 MgtC family 10 138 2.7E-40 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YP_2118 ef70c414d629867e598b12f2a12ddaf1 219 PRINTS PR01837 MgtC/SapB protein signature 12 31 3.7E-48 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YP_2118 ef70c414d629867e598b12f2a12ddaf1 219 PRINTS PR01837 MgtC/SapB protein signature 65 87 3.7E-48 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YP_2118 ef70c414d629867e598b12f2a12ddaf1 219 PRINTS PR01837 MgtC/SapB protein signature 92 116 3.7E-48 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YP_2118 ef70c414d629867e598b12f2a12ddaf1 219 PRINTS PR01837 MgtC/SapB protein signature 31 49 3.7E-48 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YP_0996 9593fdcd733a4a89ba9be36dc46f5b4b 236 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 20 232 6.7E-62 T 14-10-2018 IPR006214 Bax inhibitor 1-related YP_1573 92b4e8651b29e0425f30e0652f3a0dd6 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 3.5E-23 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_1573 92b4e8651b29e0425f30e0652f3a0dd6 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 3.5E-23 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_1573 92b4e8651b29e0425f30e0652f3a0dd6 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 3.5E-23 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_1573 92b4e8651b29e0425f30e0652f3a0dd6 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 88 3.3E-33 T 14-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 YP_1573 92b4e8651b29e0425f30e0652f3a0dd6 89 PIRSF PIRSF004669 1 89 1.8E-32 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_1573 92b4e8651b29e0425f30e0652f3a0dd6 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 8.0E-30 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YP_2419 61e91a363d561bf30c366812aeb33e74 100 Gene3D G3DSA:3.30.70.860 29 100 3.0E-26 T 14-10-2018 IPR035571 UPF0234-like, C-terminal YP_2419 61e91a363d561bf30c366812aeb33e74 100 Pfam PF04175 Protein of unknown function (DUF406) 10 100 1.5E-39 T 14-10-2018 IPR005272 Conserved hypothetical protein CHP00743 YP_2419 61e91a363d561bf30c366812aeb33e74 100 TIGRFAM TIGR00743 TIGR00743: conserved hypothetical protein 7 100 3.2E-39 T 14-10-2018 IPR005272 Conserved hypothetical protein CHP00743 YP_2394 e52061f1c392e6b7cd32ffb9882e101c 242 Pfam PF05036 Sporulation related domain 163 235 1.8E-9 T 14-10-2018 IPR007730 Sporulation-like domain GO:0042834 YP_2394 e52061f1c392e6b7cd32ffb9882e101c 242 Hamap MF_02022 Cell division protein DedD [dedD]. 16 240 25.48 T 14-10-2018 IPR032898 Cell division protein DedD GO:0030428|GO:0032506 YP_2394 e52061f1c392e6b7cd32ffb9882e101c 242 SUPERFAMILY SSF110997 163 236 1.7E-11 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 YP_1154 20813ada10506e551cb2692cd9d35fbd 193 Pfam PF17194 Transcriptional regulator, AbiEi antitoxin N-terminal domain 4 94 1.1E-29 T 14-10-2018 IPR033455 Transcriptional regulator AbiEi antitoxin, N-terminal domain YP_1154 20813ada10506e551cb2692cd9d35fbd 193 Pfam PF11459 Transcriptional regulator, AbiEi antitoxin, Type IV TA system 99 191 4.2E-21 T 14-10-2018 IPR021561 Transcriptional regulator, AbiEi 3 antitoxin, Type IV TA system YP_0272 b338a4631aaa0d460e0001e91d00a0eb 302 SUPERFAMILY SSF103481 45 139 1.27E-7 T 14-10-2018 YP_0272 b338a4631aaa0d460e0001e91d00a0eb 302 SUPERFAMILY SSF103481 188 296 1.31E-8 T 14-10-2018 YP_0272 b338a4631aaa0d460e0001e91d00a0eb 302 Pfam PF00892 EamA-like transporter family 157 291 2.9E-8 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YP_1892 251fcadd55151165ed09acc532a8779b 323 Gene3D G3DSA:3.40.50.150 90 323 1.7E-21 T 14-10-2018 YP_1892 251fcadd55151165ed09acc532a8779b 323 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 8 321 3.4E-146 T 14-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 YP_1892 251fcadd55151165ed09acc532a8779b 323 SUPERFAMILY SSF53335 89 317 4.29E-33 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_1892 251fcadd55151165ed09acc532a8779b 323 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 12 322 54.277 T 14-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 YP_1892 251fcadd55151165ed09acc532a8779b 323 Pfam PF08003 Protein of unknown function (DUF1698) 7 322 3.1E-165 T 14-10-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like YP_3250 3abf23265ad9b04f58b5a293aebbf444 239 SUPERFAMILY SSF49354 31 137 1.02E-6 T 14-10-2018 IPR008962 PapD-like superfamily YP_3250 3abf23265ad9b04f58b5a293aebbf444 239 Gene3D G3DSA:2.60.40.10 30 163 8.7E-27 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_0764 d6def7e7622e1b6429d225298cf11e17 110 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 13 108 1.0E-39 T 14-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 YP_0764 d6def7e7622e1b6429d225298cf11e17 110 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 20 93 1.0E-18 T 14-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 YP_3757 a3a59a445bc3fbbb92946c2685fc1ccf 361 Gene3D G3DSA:2.160.20.10 41 361 1.3E-132 T 14-10-2018 IPR012334 Pectin lyase fold YP_3757 a3a59a445bc3fbbb92946c2685fc1ccf 361 Pfam PF01095 Pectinesterase 31 335 3.2E-38 T 14-10-2018 IPR000070 Pectinesterase, catalytic GO:0005618|GO:0030599|GO:0042545 KEGG: 00040+3.1.1.11|MetaCyc: PWY-1081|MetaCyc: PWY-7246|MetaCyc: PWY-7248 YP_3757 a3a59a445bc3fbbb92946c2685fc1ccf 361 SUPERFAMILY SSF51126 28 357 3.14E-60 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor YP_2284 fb332b6635be28b1d540319a96d38092 448 Pfam PF09611 CRISPR-associated protein (Cas_Csy1) 59 429 1.4E-131 T 14-10-2018 IPR013397 CRISPR-associated protein Csy1 YP_2284 fb332b6635be28b1d540319a96d38092 448 TIGRFAM TIGR02564 cas_Csy1: CRISPR type I-F/YPEST-associated protein Csy1 58 436 9.9E-174 T 14-10-2018 IPR013397 CRISPR-associated protein Csy1 YP_2427 47862efd253d4265f166b2541b348fbf 100 Pfam PF04995 Heme exporter protein D (CcmD) 15 58 4.6E-19 T 14-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 YP_2427 47862efd253d4265f166b2541b348fbf 100 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 12 58 6.7E-21 T 14-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 YP_0105 2409a8f5766ea4714ead9159156f689f 161 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 4.8E-62 T 14-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 YP_0105 2409a8f5766ea4714ead9159156f689f 161 Hamap MF_00471 Regulator of ribonuclease activity A [rraA]. 1 161 46.958 T 14-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 YP_0105 2409a8f5766ea4714ead9159156f689f 161 Pfam PF03737 Aldolase/RraA 5 152 1.2E-35 T 14-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein YP_0105 2409a8f5766ea4714ead9159156f689f 161 Gene3D G3DSA:3.50.30.40 1 161 2.4E-61 T 14-10-2018 YP_0105 2409a8f5766ea4714ead9159156f689f 161 TIGRFAM TIGR02998 RraA_entero: regulator of ribonuclease activity A 1 161 7.1E-87 T 14-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 YP_0105 2409a8f5766ea4714ead9159156f689f 161 SUPERFAMILY SSF89562 2 158 4.71E-44 T 14-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily YP_pCD14 131db03a1c0ac853391163e2efc14c84 288 Pfam PF03421 YopJ Serine/Threonine acetyltransferase 26 198 3.0E-63 T 14-10-2018 IPR005083 Serine/Threonine acetyltransferase, YopJ YP_3834 ba3117c6cedc25cad18af00d79987cd0 187 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 4 186 27.338 T 14-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 YP_3834 ba3117c6cedc25cad18af00d79987cd0 187 PIRSF PIRSF028513 1 187 3.1E-41 T 14-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 YP_3834 ba3117c6cedc25cad18af00d79987cd0 187 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 6 183 3.4E-54 T 14-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 YP_3834 ba3117c6cedc25cad18af00d79987cd0 187 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 13 184 2.6E-52 T 14-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related YP_3834 ba3117c6cedc25cad18af00d79987cd0 187 Gene3D G3DSA:2.60.450.10 60 187 6.4E-48 T 14-10-2018 YP_0898 6e562ba9ce64535dbafd93a4b15155ac 122 Pfam PF10618 Phage tail tube protein 6 121 2.7E-42 T 14-10-2018 IPR019596 Bacteriophage Mu, GpM, tail tube YP_3568 056d47a7a7b0a1204e7ec8de4288c270 94 Pfam PF09204 Bacterial self-protective colicin-like immunity 1 87 2.1E-34 T 14-10-2018 IPR015287 Colicin D immunity protein domain GO:0015643|GO:0030153 YP_3568 056d47a7a7b0a1204e7ec8de4288c270 94 Gene3D G3DSA:1.20.120.650 1 89 4.4E-20 T 14-10-2018 IPR036471 Colicin D superfamily YP_3568 056d47a7a7b0a1204e7ec8de4288c270 94 SUPERFAMILY SSF101125 2 89 9.42E-37 T 14-10-2018 IPR036471 Colicin D superfamily YP_pCD71 9e6e4b6667a26ef47adaa41d81a729d0 107 Gene3D G3DSA:1.10.10.60 14 97 8.8E-8 T 14-10-2018 YP_pCD71 9e6e4b6667a26ef47adaa41d81a729d0 107 Pfam PF01527 Transposase 8 81 6.7E-22 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 YP_pCD71 9e6e4b6667a26ef47adaa41d81a729d0 107 SUPERFAMILY SSF46689 9 98 4.3E-19 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 SUPERFAMILY SSF51905 1 314 3.8E-56 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 313 1.8E-125 T 14-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 Gene3D G3DSA:3.50.50.60 118 244 4.8E-129 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 Gene3D G3DSA:3.50.50.60 9 312 4.8E-129 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 300 4.5E-51 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 14-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 1.9E-76 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 1.9E-76 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 1.9E-76 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 1.9E-76 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 1.9E-76 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 1.9E-76 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 1.9E-76 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 1.9E-76 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 1.9E-76 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 6.9E-41 T 14-10-2018 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 6.9E-41 T 14-10-2018 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 6.9E-41 T 14-10-2018 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 6.9E-41 T 14-10-2018 YP_1219 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 6.9E-41 T 14-10-2018 YP_2032 dba2bbc6e16d8453ca8a24cb769d3700 109 Pfam PF04328 Selenoprotein, putative 46 109 1.6E-24 T 14-10-2018 IPR007423 Selenoprotein, putative YP_1461 08a24b269ba92845ff091d98588a2c35 305 SUPERFAMILY SSF88713 19 303 4.7E-61 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 YP_1461 08a24b269ba92845ff091d98588a2c35 305 Pfam PF01522 Polysaccharide deacetylase 53 157 7.6E-20 T 14-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 YP_1461 08a24b269ba92845ff091d98588a2c35 305 Gene3D G3DSA:3.20.20.370 14 304 8.5E-100 T 14-10-2018 YP_0684 b79e71f444a58f0454a892e5526c5229 596 Gene3D G3DSA:2.40.160.50 213 593 3.8E-60 T 14-10-2018 YP_0684 b79e71f444a58f0454a892e5526c5229 596 Pfam PF08479 POTRA domain, ShlB-type 86 166 3.0E-13 T 14-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type YP_0684 b79e71f444a58f0454a892e5526c5229 596 Gene3D G3DSA:3.10.20.310 79 166 5.7E-16 T 14-10-2018 YP_0684 b79e71f444a58f0454a892e5526c5229 596 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 241 532 4.2E-17 T 14-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal YP_3867 e2b0887e5ba25c7810335f2adef5db76 100 Pfam PF16083 LydA holin phage, holin superfamily III 15 92 1.9E-25 T 14-10-2018 IPR032126 LydA-like holin YP_2370 0e194c15d0515d6f0acc33661682eddb 197 ProDom PD353566 UPF0207 HYDROLASE HD PHOSPHOHYDROLASE METAL-DEPENDENT SUBDOMAIN YFBR PHOSPHOHYDROLASE NUCLEOTIDE-BINDING NUCLEOSIDE 78 174 5.0E-51 T 14-10-2018 YP_2370 0e194c15d0515d6f0acc33661682eddb 197 SMART SM00471 24 149 2.0E-7 T 14-10-2018 IPR003607 HD/PDEase domain YP_2370 0e194c15d0515d6f0acc33661682eddb 197 Pfam PF13023 HD domain 9 159 4.8E-18 T 14-10-2018 IPR006674 HD domain YP_2370 0e194c15d0515d6f0acc33661682eddb 197 SUPERFAMILY SSF109604 2 191 1.39E-44 T 14-10-2018 YP_2370 0e194c15d0515d6f0acc33661682eddb 197 Hamap MF_01100 5'-deoxynucleotidase YfbR [yfbR]. 1 193 45.484 T 14-10-2018 IPR022971 5'-deoxynucleotidase YfbR KEGG: 00240+3.1.3.89 YP_2370 0e194c15d0515d6f0acc33661682eddb 197 Gene3D G3DSA:1.10.3210.10 1 196 4.8E-86 T 14-10-2018 YP_pCRY15 41774e4f0720248eb65a25658f4b23b4 416 Pfam PF03743 Bacterial conjugation TrbI-like protein 220 404 2.9E-42 T 14-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI YP_pCRY15 41774e4f0720248eb65a25658f4b23b4 416 Gene3D G3DSA:2.40.128.260 347 413 8.3E-7 T 14-10-2018 YP_pCRY15 41774e4f0720248eb65a25658f4b23b4 416 Gene3D G3DSA:2.40.128.260 213 344 1.4E-34 T 14-10-2018 YP_2452 4ef14dcbfbc98bcab2667cfb2e604aae 148 Hamap MF_00128 Protein NrdI [nrdI]. 17 147 36.262 T 14-10-2018 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial YP_2452 4ef14dcbfbc98bcab2667cfb2e604aae 148 PIRSF PIRSF005087 15 148 4.0E-54 T 14-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI YP_2452 4ef14dcbfbc98bcab2667cfb2e604aae 148 Gene3D G3DSA:3.40.50.360 17 148 8.5E-46 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_2452 4ef14dcbfbc98bcab2667cfb2e604aae 148 TIGRFAM TIGR00333 nrdI: nrdI protein 19 146 4.0E-53 T 14-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI YP_2452 4ef14dcbfbc98bcab2667cfb2e604aae 148 Pfam PF07972 NrdI Flavodoxin like 19 137 3.7E-47 T 14-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI YP_2452 4ef14dcbfbc98bcab2667cfb2e604aae 148 SUPERFAMILY SSF52218 14 146 1.61E-23 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_3987 8917dc8e0e061463c4536d914924e073 214 Gene3D G3DSA:1.10.10.10 12 115 7.6E-6 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3987 8917dc8e0e061463c4536d914924e073 214 SUPERFAMILY SSF46785 16 194 1.87E-26 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3868 cccabe6b11d1db774c5a0b03aba014e1 136 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 63 130 4.9E-17 T 14-10-2018 IPR039561 Peptidase M15C GO:0008233 YP_3868 cccabe6b11d1db774c5a0b03aba014e1 136 SUPERFAMILY SSF55166 5 132 8.11E-30 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YP_3868 cccabe6b11d1db774c5a0b03aba014e1 136 Gene3D G3DSA:3.30.1380.10 11 130 8.0E-23 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YP_2145 a4768dc5e1796488c1c4b179592f5e8d 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 311 5.2E-44 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2145 a4768dc5e1796488c1c4b179592f5e8d 321 SUPERFAMILY SSF161098 69 300 3.4E-24 T 14-10-2018 IPR035906 MetI-like superfamily YP_0857 1166f89c1b01b145da1791c91c840b95 60 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 4 55 7.8E-5 T 14-10-2018 IPR010260 DNA-binding transcriptional activator AlpA YP_3220 8f50f5ef33f1929ab0fc2cc275880dd4 403 Pfam PF03272 Putative mucin or carbohydrate-binding module 41 144 2.9E-12 T 14-10-2018 IPR004954 Putative mucin/carbohydrate-binding domain YP_3220 8f50f5ef33f1929ab0fc2cc275880dd4 403 Pfam PF03272 Putative mucin or carbohydrate-binding module 234 345 1.4E-30 T 14-10-2018 IPR004954 Putative mucin/carbohydrate-binding domain YP_2997 ff0d54e974b40329591ff9e8709c0a3f 353 Pfam PF01618 MotA/TolQ/ExbB proton channel family 209 317 1.3E-34 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel YP_2997 ff0d54e974b40329591ff9e8709c0a3f 353 TIGRFAM TIGR02797 exbB: tonB-system energizer ExbB 120 331 3.7E-96 T 14-10-2018 IPR014164 TonB-system energizer ExbB type-1 GO:0016020|GO:0022857|GO:0055085 YP_1547 16e880f4004379e01e4965b42f418091 266 Gene3D G3DSA:3.40.190.10 126 225 2.0E-73 T 14-10-2018 YP_1547 16e880f4004379e01e4965b42f418091 266 SUPERFAMILY SSF53850 15 264 6.73E-78 T 14-10-2018 YP_1547 16e880f4004379e01e4965b42f418091 266 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 43 261 3.6E-73 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_1547 16e880f4004379e01e4965b42f418091 266 SMART SM00062 42 263 2.7E-86 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YP_1547 16e880f4004379e01e4965b42f418091 266 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 65 78 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site YP_1547 16e880f4004379e01e4965b42f418091 266 Gene3D G3DSA:3.40.190.10 40 260 2.0E-73 T 14-10-2018 YP_1547 16e880f4004379e01e4965b42f418091 266 SMART SM00079 42 262 6.2E-5 T 14-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 YP_1200 cd62ff6e78886be13899a872c9395e47 94 SMART SM00411 1 91 2.7E-41 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_1200 cd62ff6e78886be13899a872c9395e47 94 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 5.9E-19 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_1200 cd62ff6e78886be13899a872c9395e47 94 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 5.9E-19 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_1200 cd62ff6e78886be13899a872c9395e47 94 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 5.9E-19 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_1200 cd62ff6e78886be13899a872c9395e47 94 SUPERFAMILY SSF47729 1 91 3.83E-29 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YP_1200 cd62ff6e78886be13899a872c9395e47 94 Pfam PF00216 Bacterial DNA-binding protein 1 91 5.0E-29 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YP_1200 cd62ff6e78886be13899a872c9395e47 94 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 30.373 T 14-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 YP_1200 cd62ff6e78886be13899a872c9395e47 94 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 93 2.5E-51 T 14-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 YP_1200 cd62ff6e78886be13899a872c9395e47 94 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 14-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 YP_1200 cd62ff6e78886be13899a872c9395e47 94 Gene3D G3DSA:4.10.520.10 40 94 1.3E-33 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YP_1200 cd62ff6e78886be13899a872c9395e47 94 Gene3D G3DSA:4.10.520.10 2 39 2.2E-16 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YP_2373 81f1498adfcf83d1673854e44046bacc 220 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 183 2.6E-22 T 14-10-2018 YP_2373 81f1498adfcf83d1673854e44046bacc 220 Gene3D G3DSA:3.40.50.1000 6 204 1.7E-53 T 14-10-2018 IPR023214 HAD superfamily YP_2373 81f1498adfcf83d1673854e44046bacc 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 1.3E-5 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_2373 81f1498adfcf83d1673854e44046bacc 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 145 165 1.3E-5 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_2373 81f1498adfcf83d1673854e44046bacc 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 97 110 1.3E-5 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_2373 81f1498adfcf83d1673854e44046bacc 220 Gene3D G3DSA:1.10.150.240 20 82 1.7E-53 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YP_2373 81f1498adfcf83d1673854e44046bacc 220 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 61 183 4.8E-15 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YP_2373 81f1498adfcf83d1673854e44046bacc 220 SUPERFAMILY SSF56784 6 205 6.62E-46 T 14-10-2018 IPR036412 HAD-like superfamily YP_2698 57574e446e1b019e922f4251088ee482 181 Pfam PF13302 Acetyltransferase (GNAT) domain 7 141 6.3E-22 T 14-10-2018 IPR000182 GNAT domain YP_2698 57574e446e1b019e922f4251088ee482 181 SUPERFAMILY SSF55729 3 164 6.67E-41 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_2698 57574e446e1b019e922f4251088ee482 181 Gene3D G3DSA:3.40.630.30 5 174 1.1E-50 T 14-10-2018 YP_2552 cec1f24e83f5090f01eb7aca30558e5f 453 Gene3D G3DSA:1.10.1790.10 258 357 3.6E-13 T 14-10-2018 YP_2552 cec1f24e83f5090f01eb7aca30558e5f 453 Pfam PF00874 PRD domain 266 355 8.8E-16 T 14-10-2018 IPR011608 PRD domain GO:0006355 YP_2552 cec1f24e83f5090f01eb7aca30558e5f 453 SUPERFAMILY SSF63520 258 359 1.7E-18 T 14-10-2018 IPR036634 PRD domain superfamily GO:0006355 YP_1972 4004e2d9a652c00dc374ebe92168434f 338 SMART SM00448 8 120 1.0E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1972 4004e2d9a652c00dc374ebe92168434f 338 Hamap MF_00958 Regulator of RpoS [rssB]. 1 337 56.022 T 14-10-2018 IPR028616 Regulator of RpoS YP_1972 4004e2d9a652c00dc374ebe92168434f 338 SUPERFAMILY SSF52172 7 144 3.56E-32 T 14-10-2018 IPR011006 CheY-like superfamily YP_1972 4004e2d9a652c00dc374ebe92168434f 338 Pfam PF00072 Response regulator receiver domain 10 120 9.1E-25 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YP_1972 4004e2d9a652c00dc374ebe92168434f 338 Gene3D G3DSA:3.40.50.2300 2 130 2.7E-31 T 14-10-2018 YP_1972 4004e2d9a652c00dc374ebe92168434f 338 Gene3D G3DSA:3.60.40.10 137 321 1.2E-8 T 14-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 YP_0455 40b31f73708f89ae6d5bff623230b885 345 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 10 337 3.0E-104 T 14-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 YP_0455 40b31f73708f89ae6d5bff623230b885 345 Pfam PF03741 Integral membrane protein TerC family 73 299 1.6E-41 T 14-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 YP_1302 9ce816b557d3e46178660617e12cd263 380 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 208 355 7.2E-9 T 14-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 YP_1302 9ce816b557d3e46178660617e12cd263 380 SUPERFAMILY SSF56529 155 361 7.46E-25 T 14-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YP_1302 9ce816b557d3e46178660617e12cd263 380 Gene3D G3DSA:3.90.850.10 135 359 3.7E-40 T 14-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YP_pMT109 77863bf22bda9a51af8eb7bba669703c 465 SUPERFAMILY SSF52540 26 289 8.92E-28 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pMT109 77863bf22bda9a51af8eb7bba669703c 465 Pfam PF13191 AAA ATPase domain 32 197 6.4E-13 T 14-10-2018 YP_pMT109 77863bf22bda9a51af8eb7bba669703c 465 SMART SM00382 50 226 1.8E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_pMT109 77863bf22bda9a51af8eb7bba669703c 465 Gene3D G3DSA:3.40.50.300 22 227 2.6E-21 T 14-10-2018 YP_3416 89bb3a50c3d3549b552c47db11cee255 626 SMART SM00364 254 273 0.24 T 14-10-2018 YP_3416 89bb3a50c3d3549b552c47db11cee255 626 SMART SM00364 171 190 10.0 T 14-10-2018 YP_3416 89bb3a50c3d3549b552c47db11cee255 626 SMART SM00364 150 169 480.0 T 14-10-2018 YP_3416 89bb3a50c3d3549b552c47db11cee255 626 SMART SM00364 129 148 0.0046 T 14-10-2018 YP_3416 89bb3a50c3d3549b552c47db11cee255 626 SMART SM00364 87 106 540.0 T 14-10-2018 YP_3416 89bb3a50c3d3549b552c47db11cee255 626 SMART SM00364 108 127 4.6E-4 T 14-10-2018 YP_3416 89bb3a50c3d3549b552c47db11cee255 626 SMART SM00364 212 231 1.2 T 14-10-2018 YP_3416 89bb3a50c3d3549b552c47db11cee255 626 SMART SM00364 233 252 0.21 T 14-10-2018 YP_3416 89bb3a50c3d3549b552c47db11cee255 626 SMART SM00364 191 210 9.4E-4 T 14-10-2018 YP_3416 89bb3a50c3d3549b552c47db11cee255 626 Gene3D G3DSA:1.20.58.90 543 615 4.3E-26 T 14-10-2018 YP_3416 89bb3a50c3d3549b552c47db11cee255 626 Gene3D G3DSA:1.20.1270.130 322 403 4.2E-28 T 14-10-2018 YP_3416 89bb3a50c3d3549b552c47db11cee255 626 Gene3D G3DSA:3.80.10.10 29 317 1.7E-60 T 14-10-2018 IPR032675 Leucine-rich repeat domain superfamily YP_3416 89bb3a50c3d3549b552c47db11cee255 626 Pfam PF14496 C-terminal novel E3 ligase, LRR-interacting 331 546 3.8E-74 T 14-10-2018 IPR029487 Novel E3 ligase domain GO:0004842|GO:0016567 MetaCyc: PWY-7511 YP_3416 89bb3a50c3d3549b552c47db11cee255 626 Gene3D G3DSA:1.20.58.360 404 542 5.0E-48 T 14-10-2018 YP_3416 89bb3a50c3d3549b552c47db11cee255 626 SUPERFAMILY SSF52058 60 302 4.08E-34 T 14-10-2018 YP_3416 89bb3a50c3d3549b552c47db11cee255 626 Pfam PF12468 Type III secretion system leucine rich repeat protein 1 60 2.3E-21 T 14-10-2018 IPR032674 LRR-containing bacterial E3 ligase, N-terminal MetaCyc: PWY-7511 YP_1037 7c48b74851654c25a40d3da3853e6687 86 TIGRFAM TIGR02112 cyd_oper_ybgE: cyd operon protein YbgE 1 86 1.7E-37 T 14-10-2018 IPR011846 Cyd operon protein YbgE YP_1037 7c48b74851654c25a40d3da3853e6687 86 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 6 83 4.6E-30 T 14-10-2018 IPR011846 Cyd operon protein YbgE YP_3771 4c035c9a1d1e437b5a7980f63aa6c92b 333 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 307 1.8E-44 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_1077 385a5a8ccb4e00e888846c6ae8186d22 255 Pfam PF12697 Alpha/beta hydrolase family 19 246 6.9E-22 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YP_1077 385a5a8ccb4e00e888846c6ae8186d22 255 Gene3D G3DSA:3.40.50.1820 2 253 6.2E-74 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1077 385a5a8ccb4e00e888846c6ae8186d22 255 SUPERFAMILY SSF53474 3 253 7.36E-52 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_1077 385a5a8ccb4e00e888846c6ae8186d22 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 85 98 2.1E-5 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YP_1077 385a5a8ccb4e00e888846c6ae8186d22 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 42 57 2.1E-5 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YP_1077 385a5a8ccb4e00e888846c6ae8186d22 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 99 112 2.1E-5 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YP_0489 a8a1d4a66dc34f9b190f6f10783ccf26 362 Pfam PF06379 L-rhamnose-proton symport protein (RhaT) 19 362 3.3E-227 T 14-10-2018 IPR004673 L-rhamnose-proton symport, RhaT GO:0008645|GO:0015153|GO:0016021 YP_0489 a8a1d4a66dc34f9b190f6f10783ccf26 362 TIGRFAM TIGR00776 RhaT: RhaT L-rhamnose-proton symporter family protein 26 360 1.5E-97 T 14-10-2018 YP_0489 a8a1d4a66dc34f9b190f6f10783ccf26 362 Hamap MF_01532 L-rhamnose-proton symporter [rhaT]. 19 362 42.992 T 14-10-2018 IPR004673 L-rhamnose-proton symport, RhaT GO:0008645|GO:0015153|GO:0016021 YP_2592 c71a6ca8c8548816fd1d9d6962e2e6b5 277 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 20 270 3.6E-27 T 14-10-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 YP_1762 8370d0d704f54f18922204e75c25c446 373 SMART SM00558 87 215 2.2E-9 T 14-10-2018 IPR003347 JmjC domain YP_1762 8370d0d704f54f18922204e75c25c446 373 Gene3D G3DSA:1.10.10.2510 205 373 2.9E-62 T 14-10-2018 YP_1762 8370d0d704f54f18922204e75c25c446 373 Pfam PF08007 Cupin superfamily protein 10 310 4.5E-101 T 14-10-2018 IPR003347 JmjC domain YP_1762 8370d0d704f54f18922204e75c25c446 373 SUPERFAMILY SSF51197 7 289 1.15E-74 T 14-10-2018 YP_1762 8370d0d704f54f18922204e75c25c446 373 Gene3D G3DSA:2.60.120.650 2 204 3.6E-86 T 14-10-2018 YP_pCD85 2c408d3ab37780060d20df72f0cc677e 339 Pfam PF00665 Integrase core domain 62 188 4.7E-22 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_pCD85 2c408d3ab37780060d20df72f0cc677e 339 SUPERFAMILY SSF53098 62 228 5.56E-13 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1638 e670695b952b66b10ad4b4a2a1f0d6c7 189 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 184 25.828 T 14-10-2018 IPR022929 Putative manganese efflux pump MntP YP_1638 e670695b952b66b10ad4b4a2a1f0d6c7 189 Pfam PF02659 Putative manganese efflux pump 31 181 1.1E-55 T 14-10-2018 IPR003810 Putative manganese efflux pump YP_0998 c903d51151d13a2fe98b9c39684e274f 81 SUPERFAMILY SSF54285 1 81 3.18E-22 T 14-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YP_0998 c903d51151d13a2fe98b9c39684e274f 81 Pfam PF02597 ThiS family 4 81 5.6E-21 T 14-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 YP_0998 c903d51151d13a2fe98b9c39684e274f 81 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 81 2.1E-24 T 14-10-2018 YP_0998 c903d51151d13a2fe98b9c39684e274f 81 Gene3D G3DSA:3.10.20.30 1 81 1.3E-26 T 14-10-2018 IPR012675 Beta-grasp domain superfamily YP_0386 a13cdff49cc1c2efd247d8f22a1b50f9 171 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 152 4.1E-62 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YP_0386 a13cdff49cc1c2efd247d8f22a1b50f9 171 PIRSF PIRSF006160 1 162 5.9E-67 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YP_0386 a13cdff49cc1c2efd247d8f22a1b50f9 171 Gene3D G3DSA:3.30.1360.80 1 171 1.9E-73 T 14-10-2018 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YP_0386 a13cdff49cc1c2efd247d8f22a1b50f9 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 2.1E-50 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YP_0386 a13cdff49cc1c2efd247d8f22a1b50f9 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 121 140 2.1E-50 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YP_0386 a13cdff49cc1c2efd247d8f22a1b50f9 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 2.1E-50 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YP_0386 a13cdff49cc1c2efd247d8f22a1b50f9 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 2.1E-50 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YP_0386 a13cdff49cc1c2efd247d8f22a1b50f9 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 77 95 2.1E-50 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YP_0386 a13cdff49cc1c2efd247d8f22a1b50f9 171 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 9 155 2.0E-84 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YP_0386 a13cdff49cc1c2efd247d8f22a1b50f9 171 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 159 35.725 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YP_0386 a13cdff49cc1c2efd247d8f22a1b50f9 171 SUPERFAMILY SSF63411 4 162 1.19E-67 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 YP_0837 0d3137168b103d43878cea70806de169 269 Pfam PF01963 TraB family 31 267 7.6E-40 T 14-10-2018 IPR002816 Pheromone shutdown, TraB YP_0297 6b5bc3db33bd18f99c67779fdfdfc653 478 Hamap MF_01128 H(+)/Cl(-) exchange transporter ClcA [clcA]. 3 469 47.926 T 14-10-2018 IPR023861 Chloride channel, ClcA GO:0005887|GO:0006821|GO:0015108 YP_0297 6b5bc3db33bd18f99c67779fdfdfc653 478 Gene3D G3DSA:1.10.3080.10 31 473 2.0E-152 T 14-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 YP_0297 6b5bc3db33bd18f99c67779fdfdfc653 478 SUPERFAMILY SSF81340 23 453 8.5E-110 T 14-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 YP_0297 6b5bc3db33bd18f99c67779fdfdfc653 478 Pfam PF00654 Voltage gated chloride channel 90 437 3.5E-89 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YP_0297 6b5bc3db33bd18f99c67779fdfdfc653 478 PRINTS PR00762 Chloride channel signature 102 119 5.5E-28 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YP_0297 6b5bc3db33bd18f99c67779fdfdfc653 478 PRINTS PR00762 Chloride channel signature 352 372 5.5E-28 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YP_0297 6b5bc3db33bd18f99c67779fdfdfc653 478 PRINTS PR00762 Chloride channel signature 387 403 5.5E-28 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YP_0297 6b5bc3db33bd18f99c67779fdfdfc653 478 PRINTS PR00762 Chloride channel signature 405 424 5.5E-28 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YP_0297 6b5bc3db33bd18f99c67779fdfdfc653 478 PRINTS PR00762 Chloride channel signature 183 202 5.5E-28 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YP_2839 edaa3995c681e7c9e3af143c7bc8abb4 177 Pfam PF11356 Type II secretion system protein C 38 174 6.4E-11 T 14-10-2018 IPR024961 Type II secretion system protein C, N-terminal YP_2839 edaa3995c681e7c9e3af143c7bc8abb4 177 Gene3D G3DSA:2.30.30.830 114 176 2.0E-13 T 14-10-2018 YP_2812 f9f203d5a2e9ee5cd047839243def9d5 149 SUPERFAMILY SSF52218 1 148 1.9E-39 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_2812 f9f203d5a2e9ee5cd047839243def9d5 149 Gene3D G3DSA:3.40.50.360 1 149 1.1E-43 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_2812 f9f203d5a2e9ee5cd047839243def9d5 149 PRINTS PR00369 Flavodoxin signature 84 94 5.3E-7 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YP_2812 f9f203d5a2e9ee5cd047839243def9d5 149 PRINTS PR00369 Flavodoxin signature 108 127 5.3E-7 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YP_2812 f9f203d5a2e9ee5cd047839243def9d5 149 PRINTS PR00369 Flavodoxin signature 53 64 5.3E-7 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YP_2812 f9f203d5a2e9ee5cd047839243def9d5 149 Pfam PF00258 Flavodoxin 6 137 6.8E-23 T 14-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 YP_1078 c501220ea87ba14bcd81957c49e79617 95 Pfam PF01402 Ribbon-helix-helix protein, copG family 52 88 6.7E-8 T 14-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 YP_1039 082cb72adc2e2ac294aac9c2a69a8cd7 522 PIRSF PIRSF006446 1 521 1.1E-140 T 14-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 YP_1039 082cb72adc2e2ac294aac9c2a69a8cd7 522 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 501 5.5E-173 T 14-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 YP_3859 38506d3759974918c4e845c06455592b 67 Hamap MF_01546 Protein AaeX [aaeX]. 1 67 23.167 T 14-10-2018 IPR012451 Protein of unknown function DUF1656 YP_3859 38506d3759974918c4e845c06455592b 67 Pfam PF07869 Protein of unknown function (DUF1656) 7 61 1.2E-20 T 14-10-2018 IPR012451 Protein of unknown function DUF1656 YP_0104 352d4c7eb6a11fbad6158496e5e5d8ab 195 Pfam PF14016 Protein of unknown function (DUF4232) 51 173 1.0E-12 T 14-10-2018 IPR025326 Protein of unknown function DUF4232 YP_3696 c4e09401cbe3b2925e010545e653cf41 225 PIRSF PIRSF006324 20 225 6.1E-57 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 YP_3696 c4e09401cbe3b2925e010545e653cf41 225 Pfam PF01810 LysE type translocator 36 224 2.2E-36 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 YP_1519 c8ffc6cf6f3f4bc00299952dbc1a4ef2 319 SUPERFAMILY SSF53098 111 274 1.23E-37 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_1519 c8ffc6cf6f3f4bc00299952dbc1a4ef2 319 Pfam PF00665 Integrase core domain 110 224 8.9E-22 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_1519 c8ffc6cf6f3f4bc00299952dbc1a4ef2 319 Pfam PF13565 Homeodomain-like domain 11 82 3.4E-8 T 14-10-2018 YP_1519 c8ffc6cf6f3f4bc00299952dbc1a4ef2 319 Gene3D G3DSA:3.30.420.10 107 249 5.1E-12 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YP_0414 088530e06a9f075ffde068419e75bd7a 71 TIGRFAM TIGR02105 III_needle: type III secretion apparatus needle protein 1 71 2.4E-31 T 14-10-2018 IPR011841 Type III secretion system, needle protein GO:0008565|GO:0009405|GO:0015031 YP_0414 088530e06a9f075ffde068419e75bd7a 71 SUPERFAMILY SSF140129 1 67 8.11E-18 T 14-10-2018 IPR037203 Type III secretion, needle-protein-like superfamily GO:0009405|GO:0015031 YP_0414 088530e06a9f075ffde068419e75bd7a 71 Pfam PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF 3 71 5.7E-21 T 14-10-2018 IPR021123 Type III secretion, needle-protein-like GO:0009405|GO:0015031 YP_3752 fa572a407ed02525d23f9bf25b6c7a72 161 SUPERFAMILY SSF55729 17 159 3.22E-32 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_3752 fa572a407ed02525d23f9bf25b6c7a72 161 Gene3D G3DSA:3.40.630.30 15 161 5.6E-47 T 14-10-2018 YP_3752 fa572a407ed02525d23f9bf25b6c7a72 161 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 26 156 2.0E-44 T 14-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 YP_3752 fa572a407ed02525d23f9bf25b6c7a72 161 Pfam PF00583 Acetyltransferase (GNAT) family 29 134 1.9E-17 T 14-10-2018 IPR000182 GNAT domain YP_3984 b9718535deba681b9ec73c180b068ccd 190 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 4 183 2.7E-83 T 14-10-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 YP_3984 b9718535deba681b9ec73c180b068ccd 190 Gene3D G3DSA:1.10.340.30 3 189 5.7E-86 T 14-10-2018 YP_3984 b9718535deba681b9ec73c180b068ccd 190 SUPERFAMILY SSF48150 4 186 9.42E-81 T 14-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 YP_3984 b9718535deba681b9ec73c180b068ccd 190 Pfam PF03352 Methyladenine glycosylase 8 184 1.6E-78 T 14-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 YP_3976 7fc5fc9e983c38b78643341e4c8c49af 82 Pfam PF10928 Protein of unknown function (DUF2810) 28 80 3.1E-33 T 14-10-2018 IPR021230 Protein of unknown function DUF2810 YP_3976 7fc5fc9e983c38b78643341e4c8c49af 82 Gene3D G3DSA:3.30.1370.150 23 82 3.9E-35 T 14-10-2018 YP_2044 564fc6fa0ed5a2c557a259ade22daba7 214 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 23 212 26.463 T 14-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 YP_2044 564fc6fa0ed5a2c557a259ade22daba7 214 Pfam PF02508 Rnf-Nqr subunit, membrane protein 26 211 2.6E-60 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YP_2044 564fc6fa0ed5a2c557a259ade22daba7 214 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 24 212 1.6E-90 T 14-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 YP_2044 564fc6fa0ed5a2c557a259ade22daba7 214 PIRSF PIRSF006102 21 214 5.6E-62 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YP_2787 fc351bc81ac394254052a877243d2591 105 Pfam PF00034 Cytochrome c 34 104 2.7E-8 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YP_2787 fc351bc81ac394254052a877243d2591 105 SUPERFAMILY SSF46626 33 104 4.8E-21 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 YP_2787 fc351bc81ac394254052a877243d2591 105 Gene3D G3DSA:1.10.760.10 22 105 1.2E-25 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 YP_2787 fc351bc81ac394254052a877243d2591 105 PRINTS PR00605 Class IC cytochrome C signature 78 100 7.4E-5 T 14-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 YP_2787 fc351bc81ac394254052a877243d2591 105 PRINTS PR00605 Class IC cytochrome C signature 33 44 7.4E-5 T 14-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 YP_3708 3e4d4a45eb2b8cfecfba22d75630d56c 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 3.2E-33 T 14-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_3708 3e4d4a45eb2b8cfecfba22d75630d56c 87 Gene3D G3DSA:1.20.58.110 1 87 3.8E-31 T 14-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_3708 3e4d4a45eb2b8cfecfba22d75630d56c 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.359 T 14-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_3708 3e4d4a45eb2b8cfecfba22d75630d56c 87 SUPERFAMILY SSF46992 3 86 1.44E-31 T 14-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_3708 3e4d4a45eb2b8cfecfba22d75630d56c 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 87 1.0E-28 T 14-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_3708 3e4d4a45eb2b8cfecfba22d75630d56c 87 Pfam PF01649 Ribosomal protein S20 2 84 1.0E-27 T 14-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 YP_0253 ad570b838904cb7e5987d86ead747e07 250 Pfam PF07072 Cell division protein 22 228 3.1E-78 T 14-10-2018 IPR009777 Cell division protein ZapD YP_0253 ad570b838904cb7e5987d86ead747e07 250 Hamap MF_01092 Cell division protein ZapD [zapD]. 7 250 32.807 T 14-10-2018 IPR009777 Cell division protein ZapD YP_0253 ad570b838904cb7e5987d86ead747e07 250 Gene3D G3DSA:2.60.440.10 9 250 1.6E-84 T 14-10-2018 IPR027462 Z ring-associated protein D, C-terminal YP_0253 ad570b838904cb7e5987d86ead747e07 250 Gene3D G3DSA:1.10.3900.10 16 182 1.6E-84 T 14-10-2018 YP_0253 ad570b838904cb7e5987d86ead747e07 250 SUPERFAMILY SSF160950 6 250 1.01E-91 T 14-10-2018 IPR036268 ZapD domain superfamily YP_3901 2bce05d434400ce56843205f01a86307 157 Pfam PF05433 Glycine zipper 2TM domain 63 104 2.2E-7 T 14-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 YP_4017 77ef118fbdcdfa8002e7697274ed57ba 245 Gene3D G3DSA:1.10.3720.10 7 241 7.2E-46 T 14-10-2018 IPR035906 MetI-like superfamily YP_4017 77ef118fbdcdfa8002e7697274ed57ba 245 SUPERFAMILY SSF161098 17 226 1.96E-38 T 14-10-2018 IPR035906 MetI-like superfamily YP_4017 77ef118fbdcdfa8002e7697274ed57ba 245 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 229 9.1E-12 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_4017 77ef118fbdcdfa8002e7697274ed57ba 245 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 17 85 2.6E-16 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YP_1742 fc8fe09d46023afbbc71d832b2fedfbd 182 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 163 1.0E-35 T 14-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase YP_1742 fc8fe09d46023afbbc71d832b2fedfbd 182 PIRSF PIRSF030780 1 182 2.2E-106 T 14-10-2018 IPR016956 Inner membrane protein YdjM YP_3715 99be1463cb551adb0dfd174d1c63237f 462 Pfam PF07690 Major Facilitator Superfamily 82 408 7.4E-29 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_3715 99be1463cb551adb0dfd174d1c63237f 462 Gene3D G3DSA:1.20.1250.20 36 450 1.1E-58 T 14-10-2018 YP_3715 99be1463cb551adb0dfd174d1c63237f 462 SUPERFAMILY SSF103473 19 442 5.49E-66 T 14-10-2018 IPR036259 MFS transporter superfamily YP_1688 bd56aee6fb75eaeee8c5b33f3850279a 430 Pfam PF02687 FtsX-like permease family 335 422 4.7E-14 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 YP_2964 3a9c20c2037a024d43491e91375dc7a9 272 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 5 271 18.356 T 14-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 YP_2964 3a9c20c2037a024d43491e91375dc7a9 272 Pfam PF02673 Bacitracin resistance protein BacA 10 266 9.2E-86 T 14-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 YP_2964 3a9c20c2037a024d43491e91375dc7a9 272 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 10 264 6.6E-99 T 14-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 YP_3695 32b80e66c5f636eda80385f85ba52da9 266 Pfam PF06738 Putative threonine/serine exporter 21 260 3.5E-68 T 14-10-2018 IPR010619 Putative threonine/serine exporter YP_0899 1fb8e971cab49252855f1c683912458f 502 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 212 375 9.2E-20 T 14-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain YP_0899 1fb8e971cab49252855f1c683912458f 502 PIRSF PIRSF007349 1 498 1.3E-156 T 14-10-2018 IPR007067 Tail sheath protein YP_0899 1fb8e971cab49252855f1c683912458f 502 Pfam PF17482 Phage tail sheath C-terminal domain 384 496 1.4E-8 T 14-10-2018 IPR020287 Tail sheath protein, C-terminal domain YP_3804 e11a2f2380eca2e3307456be43b03d0b 196 Pfam PF13580 SIS domain 9 144 2.9E-32 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YP_3804 e11a2f2380eca2e3307456be43b03d0b 196 SUPERFAMILY SSF53697 3 191 4.45E-51 T 14-10-2018 YP_3804 e11a2f2380eca2e3307456be43b03d0b 196 Gene3D G3DSA:3.40.50.10490 2 196 5.8E-69 T 14-10-2018 YP_3804 e11a2f2380eca2e3307456be43b03d0b 196 Hamap MF_01157 DnaA initiator-associating protein DiaA [diaA]. 1 196 59.319 T 14-10-2018 IPR023070 DnaA initiator-associating protein YP_3770 1e10901849b18c6f7a931e319b1a9bf8 351 Pfam PF02653 Branched-chain amino acid transport system / permease component 39 301 3.2E-45 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_3690 11cb7236efb7efeb74fdc5280c0a7443 154 Pfam PF12582 Protein of unknown function (DUF3757) 22 140 1.1E-27 T 14-10-2018 IPR022231 Protein of unknown function DUF3757 YP_2461 ef4255cad974778d3c48b4505e6b0d52 525 PIRSF PIRSF002741 30 517 1.7E-74 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 YP_2461 ef4255cad974778d3c48b4505e6b0d52 525 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 74 427 7.5E-81 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain YP_2461 ef4255cad974778d3c48b4505e6b0d52 525 Gene3D G3DSA:3.10.105.10 250 496 2.9E-181 T 14-10-2018 YP_2461 ef4255cad974778d3c48b4505e6b0d52 525 SUPERFAMILY SSF53850 29 505 1.94E-96 T 14-10-2018 YP_2461 ef4255cad974778d3c48b4505e6b0d52 525 Gene3D G3DSA:3.40.190.10 42 508 2.9E-181 T 14-10-2018 YP_2953 47d7f9b6a4984b6a8dccf9526c337498 156 SUPERFAMILY SSF160631 49 148 3.73E-7 T 14-10-2018 YP_0150 1559d08558f6302e8eab3659db1ca090 142 Pfam PF10748 Protein of unknown function (DUF2531) 49 121 5.9E-6 T 14-10-2018 IPR019684 HofP protein YP_3224 98489013fb094aab103803febcca58e2 416 Pfam PF13183 4Fe-4S dicluster domain 14 78 8.9E-10 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YP_3224 98489013fb094aab103803febcca58e2 416 Gene3D G3DSA:1.10.1060.10 3 99 4.3E-9 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YP_3224 98489013fb094aab103803febcca58e2 416 TIGRFAM TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit 11 415 2.2E-231 T 14-10-2018 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit GO:0009061|GO:0016020 YP_3224 98489013fb094aab103803febcca58e2 416 SUPERFAMILY SSF46548 14 89 1.74E-15 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YP_3224 98489013fb094aab103803febcca58e2 416 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 64 75 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_3224 98489013fb094aab103803febcca58e2 416 Pfam PF02754 Cysteine-rich domain 313 396 1.3E-13 T 14-10-2018 IPR004017 Cysteine-rich domain YP_3224 98489013fb094aab103803febcca58e2 416 Pfam PF02754 Cysteine-rich domain 171 257 3.4E-14 T 14-10-2018 IPR004017 Cysteine-rich domain YP_3679 0b587fb496eee60a7a7cbce4ebd9bfc2 186 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 13 163 5.5E-55 T 14-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YP_3679 0b587fb496eee60a7a7cbce4ebd9bfc2 186 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 8 165 4.0E-55 T 14-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YP_3679 0b587fb496eee60a7a7cbce4ebd9bfc2 186 PIRSF PIRSF028301 2 177 6.0E-63 T 14-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YP_1379 847ec67415307b24bc13044f7840b11a 455 Pfam PF12486 Type VI secretion system, EvfB, or VasL 304 448 9.1E-50 T 14-10-2018 IPR021069 ImpA, C-terminal YP_1379 847ec67415307b24bc13044f7840b11a 455 Pfam PF06812 ImpA, N-terminal, type VI secretion system 11 112 2.8E-19 T 14-10-2018 IPR010657 ImpA, N-terminal YP_1955 6f7133561740e213e9fda12890c959b7 256 Pfam PF06629 MltA-interacting protein MipA 35 255 2.4E-55 T 14-10-2018 IPR010583 MltA-interacting MipA YP_1955 6f7133561740e213e9fda12890c959b7 256 Gene3D G3DSA:2.40.160.20 149 255 2.6E-5 T 14-10-2018 YP_2971 7cd90199f27aa7edd031f861de2aac35 93 Pfam PF04380 Membrane fusogenic activity 1 78 2.9E-28 T 14-10-2018 IPR007475 Membrane fusogenic activity YP_3949 daf773a362b1e74b38dec109746ac76b 231 TIGRFAM TIGR03360 VI_minor_1: type VI secretion-associated protein, VC_A0118 family 44 231 1.4E-81 T 14-10-2018 IPR017738 Type VI secretion system-associated, VCA0118 YP_3949 daf773a362b1e74b38dec109746ac76b 231 Pfam PF11319 Type VI secretion system VasI, EvfG, VC_A0118 46 231 4.5E-63 T 14-10-2018 IPR017738 Type VI secretion system-associated, VCA0118 YP_0471 d983a5f37daefa77d9e9be437fd6c1eb 172 Gene3D G3DSA:3.30.1490.190 93 155 4.8E-15 T 14-10-2018 YP_0471 d983a5f37daefa77d9e9be437fd6c1eb 172 Pfam PF01475 Ferric uptake regulator family 23 141 2.8E-13 T 14-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 YP_0471 d983a5f37daefa77d9e9be437fd6c1eb 172 SUPERFAMILY SSF46785 15 147 3.58E-33 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_0471 d983a5f37daefa77d9e9be437fd6c1eb 172 Gene3D G3DSA:1.10.10.10 4 92 4.2E-36 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3449 a62364edb011859a5431ca63182a7458 316 Pfam PF13523 Acetyltransferase (GNAT) domain 151 295 1.4E-49 T 14-10-2018 YP_3449 a62364edb011859a5431ca63182a7458 316 SMART SM01006 147 194 6.8E-17 T 14-10-2018 IPR019432 Siderophore biosynthesis protein, conserved domain YP_3449 a62364edb011859a5431ca63182a7458 316 Gene3D G3DSA:3.40.630.30 104 309 4.0E-60 T 14-10-2018 YP_3449 a62364edb011859a5431ca63182a7458 316 SUPERFAMILY SSF55729 114 307 4.64E-55 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_2260 02d5baf5e72a1fe7e555f99265275a0d 174 Pfam PF02620 Uncharacterized ACR, COG1399 62 171 1.2E-15 T 14-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD YP_pCD42 c0e4e4a912da90d757197815b82f39e9 154 Pfam PF07321 Type III secretion protein YscO 2 150 1.7E-48 T 14-10-2018 IPR009929 Type III secretion sytem,YscO YP_2851 537554a14711f65412ae73b68c804fdb 121 Gene3D G3DSA:1.20.58.1630 28 121 2.4E-27 T 14-10-2018 IPR038432 PulS/OutS-like superfamily YP_2851 537554a14711f65412ae73b68c804fdb 121 Pfam PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) 17 117 3.3E-20 T 14-10-2018 IPR019114 Chaperone lipoprotein, PulS/OutS-like YP_3254 876177cffefe6ad89d1975b901310a82 295 SUPERFAMILY SSF161098 56 283 2.88E-50 T 14-10-2018 IPR035906 MetI-like superfamily YP_3254 876177cffefe6ad89d1975b901310a82 295 Gene3D G3DSA:1.10.3720.10 52 293 9.8E-58 T 14-10-2018 IPR035906 MetI-like superfamily YP_3254 876177cffefe6ad89d1975b901310a82 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 293 4.5E-19 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_3594 d49ca5fb44c56e7bd6256343949746e1 88 SUPERFAMILY SSF109910 2 78 1.2E-27 T 14-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily YP_3594 d49ca5fb44c56e7bd6256343949746e1 88 Gene3D G3DSA:1.10.150.250 1 88 7.4E-39 T 14-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily YP_3594 d49ca5fb44c56e7bd6256343949746e1 88 Pfam PF03937 Flavinator of succinate dehydrogenase 6 76 9.7E-26 T 14-10-2018 IPR005631 Flavinator of succinate dehydrogenase YP_2113 b656dcc0445635f51d95774152e4a74c 123 PIRSF PIRSF025560 1 123 1.2E-44 T 14-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 YP_2113 b656dcc0445635f51d95774152e4a74c 123 Pfam PF07027 Protein of unknown function (DUF1318) 35 123 1.1E-29 T 14-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 YP_2291 1ab4c552d58667546932a39eb5f0c876 373 SUPERFAMILY SSF56925 171 373 1.91E-6 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_3678 811dfcfc5146597a1d58d7acb2a403ed 503 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 21 495 1.8E-209 T 14-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YP_3678 811dfcfc5146597a1d58d7acb2a403ed 503 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 71 495 1.2E-181 T 14-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YP_2216 b670954fdb5725914e20b2659804ae14 327 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 326 49.816 T 14-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 YP_2216 b670954fdb5725914e20b2659804ae14 327 Gene3D G3DSA:3.30.930.10 8 327 1.6E-124 T 14-10-2018 YP_2216 b670954fdb5725914e20b2659804ae14 327 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 327 1.4E-117 T 14-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 YP_2216 b670954fdb5725914e20b2659804ae14 327 SUPERFAMILY SSF46589 14 99 1.15E-21 T 14-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 YP_2216 b670954fdb5725914e20b2659804ae14 327 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 19 87 1.2E-25 T 14-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 YP_2216 b670954fdb5725914e20b2659804ae14 327 SUPERFAMILY SSF55681 92 327 2.7E-81 T 14-10-2018 YP_2216 b670954fdb5725914e20b2659804ae14 327 Pfam PF01409 tRNA synthetases class II core domain (F) 92 326 5.5E-107 T 14-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 YP_1427 38a4926447de61da56d594016f496c56 604 Pfam PF06276 Ferric iron reductase FhuF-like transporter 421 578 3.3E-38 T 14-10-2018 IPR022770 Ferric iron reductase FhuF domain YP_1427 38a4926447de61da56d594016f496c56 604 Gene3D G3DSA:1.10.510.40 388 595 3.5E-67 T 14-10-2018 YP_1427 38a4926447de61da56d594016f496c56 604 Pfam PF04183 IucA / IucC family 150 399 1.3E-75 T 14-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 YP_1427 38a4926447de61da56d594016f496c56 604 Gene3D G3DSA:1.10.274.90 3 139 6.8E-43 T 14-10-2018 YP_1775 65f543f3ed18da7237807472d0144603 285 Gene3D G3DSA:3.90.25.10 137 269 2.3E-90 T 14-10-2018 YP_1775 65f543f3ed18da7237807472d0144603 285 Pfam PF05368 NmrA-like family 2 220 7.7E-24 T 14-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 YP_1775 65f543f3ed18da7237807472d0144603 285 SUPERFAMILY SSF51735 2 245 3.31E-62 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1775 65f543f3ed18da7237807472d0144603 285 Gene3D G3DSA:3.40.50.720 3 267 2.3E-90 T 14-10-2018 YP_3854 98f56058f10323ad8d040ccc2fbae2c6 93 SUPERFAMILY SSF52038 1 87 1.31E-28 T 14-10-2018 IPR035905 Barstar-like superfamily YP_3854 98f56058f10323ad8d040ccc2fbae2c6 93 Pfam PF01337 Barstar (barnase inhibitor) 6 80 3.8E-11 T 14-10-2018 IPR000468 Barstar (barnase inhibitor) YP_3854 98f56058f10323ad8d040ccc2fbae2c6 93 Gene3D G3DSA:3.30.370.10 1 89 3.3E-35 T 14-10-2018 IPR035905 Barstar-like superfamily YP_0597 15fd16183de4dc73b238fb8e97643066 122 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 24 113 3.6E-20 T 14-10-2018 IPR009241 Toxin HigB-like YP_3249 fc8e14337500aeb558adc5a9103c72a2 220 Gene3D G3DSA:2.60.40.10 24 147 2.9E-17 T 14-10-2018 IPR013783 Immunoglobulin-like fold YP_0817 df6112abe4e9672145533014cbce1243 437 SUPERFAMILY SSF53383 37 433 3.36E-105 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YP_0817 df6112abe4e9672145533014cbce1243 437 Gene3D G3DSA:3.90.1150.10 306 437 9.8E-58 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YP_0817 df6112abe4e9672145533014cbce1243 437 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 43 429 2.1E-117 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YP_0817 df6112abe4e9672145533014cbce1243 437 Gene3D G3DSA:3.40.640.10 1 305 5.9E-103 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YP_0817 df6112abe4e9672145533014cbce1243 437 PIRSF PIRSF000390 8 437 3.7E-127 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YP_2982 06cf6250718d16be8c95099d7fac627f 194 Pfam PF05728 Uncharacterised protein family (UPF0227) 5 189 6.7E-69 T 14-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YP_2982 06cf6250718d16be8c95099d7fac627f 194 Gene3D G3DSA:3.40.50.1820 2 194 3.3E-64 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_2982 06cf6250718d16be8c95099d7fac627f 194 SUPERFAMILY SSF53474 4 189 2.25E-17 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_2581 614883efac4dd8f139288bdf408ed9b1 160 SUPERFAMILY SSF55724 5 155 6.8E-37 T 14-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YP_2581 614883efac4dd8f139288bdf408ed9b1 160 Gene3D G3DSA:3.40.1000.10 5 159 1.0E-30 T 14-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YP_2581 614883efac4dd8f139288bdf408ed9b1 160 Pfam PF08786 DcrB 12 151 3.8E-34 T 14-10-2018 IPR014894 Protein DcrB YP_1149 0604947be5303eaa1e45aaed8e9c28f0 133 Pfam PF06836 Protein of unknown function (DUF1240) 39 132 1.9E-40 T 14-10-2018 IPR010665 Protein of unknown function DUF1240 YP_3237 0f174b6e35fc67a567d9cfe7ed461537 317 Pfam PF02687 FtsX-like permease family 218 307 2.4E-6 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 YP_3237 0f174b6e35fc67a567d9cfe7ed461537 317 PIRSF PIRSF003097 16 313 1.2E-94 T 14-10-2018 IPR004513 Cell division protein FtsX GO:0016021 YP_3237 0f174b6e35fc67a567d9cfe7ed461537 317 TIGRFAM TIGR00439 ftsX: putative protein insertion permease FtsX 19 316 1.6E-130 T 14-10-2018 IPR004513 Cell division protein FtsX GO:0016021 YP_1252 cf3381f55dfebd37f2ac20db08fe71d8 280 Gene3D G3DSA:1.10.3470.10 102 280 3.4E-50 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_1252 cf3381f55dfebd37f2ac20db08fe71d8 280 Pfam PF01032 FecCD transport family 110 274 1.0E-44 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YP_1252 cf3381f55dfebd37f2ac20db08fe71d8 280 SUPERFAMILY SSF81345 109 275 9.15E-44 T 14-10-2018 IPR037294 ABC transporter, BtuC-like YP_1689 ee26daa0210531e4aa07233b76d94679 406 Pfam PF12704 MacB-like periplasmic core domain 58 222 5.4E-12 T 14-10-2018 IPR025857 MacB-like periplasmic core domain YP_1689 ee26daa0210531e4aa07233b76d94679 406 Pfam PF02687 FtsX-like permease family 311 399 1.5E-12 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 YP_3691 2b91c4b25391cdf0cce463925ac7a91e 73 Pfam PF12582 Protein of unknown function (DUF3757) 10 49 8.4E-5 T 14-10-2018 IPR022231 Protein of unknown function DUF3757 YP_0153 72be2aa6396ad0abaa3a71920db8eba5 173 Hamap MF_00109 Shikimate kinase [aroK]. 4 171 29.487 T 14-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YP_0153 72be2aa6396ad0abaa3a71920db8eba5 173 SUPERFAMILY SSF52540 4 170 2.7E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0153 72be2aa6396ad0abaa3a71920db8eba5 173 Pfam PF01202 Shikimate kinase 13 170 8.9E-57 T 14-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YP_0153 72be2aa6396ad0abaa3a71920db8eba5 173 PRINTS PR01100 Shikimate kinase family signature 59 67 4.3E-29 T 14-10-2018 YP_0153 72be2aa6396ad0abaa3a71920db8eba5 173 PRINTS PR01100 Shikimate kinase family signature 31 44 4.3E-29 T 14-10-2018 YP_0153 72be2aa6396ad0abaa3a71920db8eba5 173 PRINTS PR01100 Shikimate kinase family signature 98 115 4.3E-29 T 14-10-2018 YP_0153 72be2aa6396ad0abaa3a71920db8eba5 173 PRINTS PR01100 Shikimate kinase family signature 7 22 4.3E-29 T 14-10-2018 YP_0153 72be2aa6396ad0abaa3a71920db8eba5 173 PRINTS PR01100 Shikimate kinase family signature 77 86 4.3E-29 T 14-10-2018 YP_0153 72be2aa6396ad0abaa3a71920db8eba5 173 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 14-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YP_0153 72be2aa6396ad0abaa3a71920db8eba5 173 Gene3D G3DSA:3.40.50.300 1 173 1.2E-58 T 14-10-2018 YP_2448 48a23a23f7e76e2df74b5ae26cc9655e 388 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 195 360 2.8E-26 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2448 48a23a23f7e76e2df74b5ae26cc9655e 388 SUPERFAMILY SSF161098 174 356 2.88E-43 T 14-10-2018 IPR035906 MetI-like superfamily YP_2448 48a23a23f7e76e2df74b5ae26cc9655e 388 Gene3D G3DSA:1.10.3720.10 171 361 3.0E-38 T 14-10-2018 IPR035906 MetI-like superfamily YP_3659 dbd10df0cc9e1d058483b95b6c4b49c2 243 Pfam PF00005 ABC transporter 26 164 2.6E-34 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YP_3659 dbd10df0cc9e1d058483b95b6c4b49c2 243 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 9 217 2.2E-101 T 14-10-2018 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0016021|GO:0042626|GO:0071934 YP_3659 dbd10df0cc9e1d058483b95b6c4b49c2 243 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YP_3659 dbd10df0cc9e1d058483b95b6c4b49c2 243 SUPERFAMILY SSF52540 8 227 5.83E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_3659 dbd10df0cc9e1d058483b95b6c4b49c2 243 Gene3D G3DSA:3.40.50.300 4 235 2.8E-61 T 14-10-2018 YP_3659 dbd10df0cc9e1d058483b95b6c4b49c2 243 SMART SM00382 31 216 1.1E-18 T 14-10-2018 IPR003593 AAA+ ATPase domain YP_pMT064 92d324d80ed4aea05cc05fa9bc3e5073 276 SMART SM00244 26 189 3.2E-14 T 14-10-2018 IPR001107 Band 7 domain YP_pMT064 92d324d80ed4aea05cc05fa9bc3e5073 276 Pfam PF01145 SPFH domain / Band 7 family 24 209 3.2E-24 T 14-10-2018 IPR001107 Band 7 domain YP_2135 6c78c94698fd4439d1be5b5fb34439f1 465 PIRSF PIRSF019381 1 465 3.3E-219 T 14-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein YP_2135 6c78c94698fd4439d1be5b5fb34439f1 465 Pfam PF04317 YcjX-like family, DUF463 20 464 4.1E-188 T 14-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein YP_3032 98344f96342e234b2f86f0b2d2f77665 88 Pfam PF04316 Anti-sigma-28 factor, FlgM 45 84 3.5E-6 T 14-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal YP_3032 98344f96342e234b2f86f0b2d2f77665 88 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 86 6.3E-14 T 14-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 YP_3032 98344f96342e234b2f86f0b2d2f77665 88 SUPERFAMILY SSF101498 42 85 1.03E-6 T 14-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily YP_3154 689b253560fd79ed314cf576d3e3fc05 153 Pfam PF06092 Enterobacterial putative membrane protein (DUF943) 2 151 4.8E-62 T 14-10-2018 IPR010351 Protein of unknown function DUF943 YP_0501 ef2d56ceae23f319bf71e00c9237f92d 433 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 365 3.6E-142 T 14-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 YP_0501 ef2d56ceae23f319bf71e00c9237f92d 433 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 433 3.8E-195 T 14-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 YP_0501 ef2d56ceae23f319bf71e00c9237f92d 433 PIRSF PIRSF004539 1 433 7.0E-175 T 14-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 YP_1685 af16b4ccfe5a3691e790e1e7819a90a7 639 Pfam PF03239 Iron permease FTR1 family 156 556 1.4E-95 T 14-10-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0016020|GO:0033573|GO:0034755 YP_2511 4665f03771e5ccc420aeb8a3ed513cc9 218 Gene3D G3DSA:1.25.40.20 14 208 5.4E-26 T 14-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily YP_2511 4665f03771e5ccc420aeb8a3ed513cc9 218 SUPERFAMILY SSF48403 15 188 1.29E-30 T 14-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily YP_2511 4665f03771e5ccc420aeb8a3ed513cc9 218 SMART SM00248 43 72 600.0 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 YP_2511 4665f03771e5ccc420aeb8a3ed513cc9 218 SMART SM00248 143 172 0.6 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 YP_2511 4665f03771e5ccc420aeb8a3ed513cc9 218 SMART SM00248 110 139 460.0 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 YP_2511 4665f03771e5ccc420aeb8a3ed513cc9 218 SMART SM00248 76 105 2400.0 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 YP_pCRY22 11a07152ca40973e61a5c022dc7a5172 583 SUPERFAMILY SSF52540 155 538 1.56E-36 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_pCRY22 11a07152ca40973e61a5c022dc7a5172 583 Pfam PF01935 Domain of unknown function DUF87 179 280 1.1E-7 T 14-10-2018 IPR002789 Helicase HerA, central domain YP_pCRY22 11a07152ca40973e61a5c022dc7a5172 583 Gene3D G3DSA:3.40.50.300 133 298 1.7E-8 T 14-10-2018 YP_pCRY22 11a07152ca40973e61a5c022dc7a5172 583 Gene3D G3DSA:3.40.50.300 333 559 9.1E-22 T 14-10-2018 YP_pCRY22 11a07152ca40973e61a5c022dc7a5172 583 Pfam PF12696 TraM recognition site of TraD and TraG 404 497 1.1E-8 T 14-10-2018 IPR032689 TraD/TraG, TraM recognition site YP_pCRY22 11a07152ca40973e61a5c022dc7a5172 583 PIRSF PIRSF003273 1 583 1.4E-287 T 14-10-2018 IPR016387 Mobilization, MobA YP_0356 11ce3cecd18bcff6408b57e4bdea6a68 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 312 4.7E-38 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_0560 c6b682b49d5ae2f14db549070b9dae3a 1305 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 969 1305 7.3E-64 T 14-10-2018 IPR007452 Translocation and assembly module TamB YP_1058 7f72326531575144b7e613e534e20887 362 Pfam PF14130 Domain of unknown function (DUF4297) 16 223 3.0E-56 T 14-10-2018 IPR025382 Domain of unknown function DUF4297 YP_0063 2885d32130f310100b8f87767952a358 456 Pfam PF01551 Peptidase family M23 357 450 8.2E-26 T 14-10-2018 IPR016047 Peptidase M23 YP_0063 2885d32130f310100b8f87767952a358 456 Gene3D G3DSA:2.70.70.10 316 456 2.6E-38 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_0063 2885d32130f310100b8f87767952a358 456 SUPERFAMILY SSF51261 287 454 1.24E-46 T 14-10-2018 IPR011055 Duplicated hybrid motif YP_0347 22c34a08a8d16722200129f51ea48560 731 SUPERFAMILY SSF56935 60 731 3.36E-123 T 14-10-2018 YP_0347 22c34a08a8d16722200129f51ea48560 731 Gene3D G3DSA:2.170.130.10 58 189 1.3E-39 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YP_0347 22c34a08a8d16722200129f51ea48560 731 Pfam PF00593 TonB dependent receptor 256 730 3.7E-57 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YP_0347 22c34a08a8d16722200129f51ea48560 731 Pfam PF07715 TonB-dependent Receptor Plug Domain 71 184 3.3E-27 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain YP_0347 22c34a08a8d16722200129f51ea48560 731 Gene3D G3DSA:2.40.170.20 195 731 2.3E-127 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YP_0900 568c095c349f1cd8ee0f5c744167b43c 64 ProDom PD027295 GP38 FLUMU BACTERIOPHAGE MU-LIKE ECS4978 SB12 PHAGE ORF10 PROPHAGE 1 42 1.0E-18 T 14-10-2018 IPR024400 Protein of unknown function DUF2635 YP_0900 568c095c349f1cd8ee0f5c744167b43c 64 Pfam PF10948 Protein of unknown function (DUF2635) 3 47 2.2E-22 T 14-10-2018 IPR024400 Protein of unknown function DUF2635 YP_0350 59f94d016a129d10c640a1c5a064980e 261 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 5 249 1.5E-90 T 14-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 YP_0350 59f94d016a129d10c640a1c5a064980e 261 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 168 186 - T 14-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 YP_0350 59f94d016a129d10c640a1c5a064980e 261 SUPERFAMILY SSF55920 6 258 1.13E-87 T 14-10-2018 IPR036005 Creatinase/aminopeptidase-like YP_0350 59f94d016a129d10c640a1c5a064980e 261 Pfam PF00557 Metallopeptidase family M24 14 242 8.5E-51 T 14-10-2018 IPR000994 Peptidase M24 YP_0350 59f94d016a129d10c640a1c5a064980e 261 Hamap MF_01974 Methionine aminopeptidase [map]. 4 251 39.562 T 14-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 YP_0350 59f94d016a129d10c640a1c5a064980e 261 Gene3D G3DSA:3.90.230.10 2 254 8.9E-105 T 14-10-2018 YP_0350 59f94d016a129d10c640a1c5a064980e 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 92 108 1.2E-22 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YP_0350 59f94d016a129d10c640a1c5a064980e 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 70 83 1.2E-22 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YP_0350 59f94d016a129d10c640a1c5a064980e 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 162 174 1.2E-22 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YP_0350 59f94d016a129d10c640a1c5a064980e 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 193 205 1.2E-22 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YP_3428 c05f7d786244f65f32fe244af107423a 255 SUPERFAMILY SSF53474 8 237 3.71E-42 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_3428 c05f7d786244f65f32fe244af107423a 255 Pfam PF00975 Thioesterase domain 17 238 1.3E-44 T 14-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 YP_3428 c05f7d786244f65f32fe244af107423a 255 Gene3D G3DSA:3.40.50.1820 6 236 8.7E-54 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold YP_2055 1013a1079dd1943eba885854c07ebd67 349 Gene3D G3DSA:3.30.360.10 127 330 8.9E-140 T 14-10-2018 YP_2055 1013a1079dd1943eba885854c07ebd67 349 SUPERFAMILY SSF51735 3 196 3.32E-48 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2055 1013a1079dd1943eba885854c07ebd67 349 Gene3D G3DSA:3.40.50.720 5 316 8.9E-140 T 14-10-2018 YP_2055 1013a1079dd1943eba885854c07ebd67 349 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 121 1.1E-23 T 14-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 YP_2055 1013a1079dd1943eba885854c07ebd67 349 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 134 241 1.8E-13 T 14-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 YP_0001 43a4ab7b81d5c1e934889625011c9261 146 SUPERFAMILY SSF52218 1 146 2.86E-41 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_0001 43a4ab7b81d5c1e934889625011c9261 146 PRINTS PR00369 Flavodoxin signature 51 62 3.0E-9 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YP_0001 43a4ab7b81d5c1e934889625011c9261 146 PRINTS PR00369 Flavodoxin signature 106 125 3.0E-9 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YP_0001 43a4ab7b81d5c1e934889625011c9261 146 PRINTS PR00369 Flavodoxin signature 5 18 3.0E-9 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YP_0001 43a4ab7b81d5c1e934889625011c9261 146 PRINTS PR00369 Flavodoxin signature 82 92 3.0E-9 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YP_0001 43a4ab7b81d5c1e934889625011c9261 146 Pfam PF00258 Flavodoxin 7 138 4.4E-28 T 14-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 YP_0001 43a4ab7b81d5c1e934889625011c9261 146 Gene3D G3DSA:3.40.50.360 1 146 3.6E-50 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_3919 b77c683cf63bacffb06c83f3b44be0b5 67 Pfam PF04221 RelB antitoxin 5 57 7.3E-10 T 14-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ YP_3919 b77c683cf63bacffb06c83f3b44be0b5 67 PIRSF PIRSF003108 2 67 8.1E-15 T 14-10-2018 IPR026262 Antitoxin DinJ GO:0000986|GO:0015643|GO:0044010 YP_3561 2cfd51b0d5bb086c3cc26cb238e82699 226 SUPERFAMILY SSF46785 63 184 8.0E-23 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YP_3561 2cfd51b0d5bb086c3cc26cb238e82699 226 Pfam PF03551 Transcriptional regulator PadR-like family 68 137 4.4E-19 T 14-10-2018 IPR005149 Transcription regulator PadR, N-terminal YP_3561 2cfd51b0d5bb086c3cc26cb238e82699 226 Gene3D G3DSA:1.10.10.10 49 162 4.7E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_3152 a6c87679cd152bea5537929e8b20c72e 161 Pfam PF06092 Enterobacterial putative membrane protein (DUF943) 9 159 1.2E-65 T 14-10-2018 IPR010351 Protein of unknown function DUF943 YP_pMT006 ee6a967eae5c074c704e2cfd9a76c56f 210 Pfam PF14301 Domain of unknown function (DUF4376) 93 198 9.0E-26 T 14-10-2018 IPR025484 Domain of unknown function DUF4376 YP_2613 8cc59e83724cd60911a37d23499ce40b 80 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 12 77 4.5E-31 T 14-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor YP_2613 8cc59e83724cd60911a37d23499ce40b 80 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 23 77 5.0E-25 T 14-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor YP_1600 2ca8f60b45e62b8ba9742339ce2044ca 140 Pfam PF06366 Flagellar protein FlhE 35 140 1.6E-36 T 14-10-2018 IPR009420 Flagellar protein FlhE YP_3184 b813f4b4d71531ebc2fb971ddefb924c 363 SUPERFAMILY SSF53448 71 356 4.06E-92 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_3184 b813f4b4d71531ebc2fb971ddefb924c 363 Gene3D G3DSA:3.90.550.10 69 363 1.7E-86 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YP_3184 b813f4b4d71531ebc2fb971ddefb924c 363 Pfam PF00483 Nucleotidyl transferase 72 308 1.5E-70 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 YP_3184 b813f4b4d71531ebc2fb971ddefb924c 363 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 72 356 6.8E-159 T 14-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 YP_pMT117 ab2a5710b6c791fee68618c8d1cf826d 328 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 25 326 3.4E-78 T 14-10-2018 IPR010106 Recombination-promoting nuclease RpnA YP_pMT117 ab2a5710b6c791fee68618c8d1cf826d 328 Pfam PF04754 Putative transposase, YhgA-like 24 224 1.3E-86 T 14-10-2018 IPR006842 Transposase (putative), YhgA-like YP_3490 9b430d515d66e9dcced229e8a3a815d0 239 SUPERFAMILY SSF53335 18 237 1.22E-40 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YP_3490 9b430d515d66e9dcced229e8a3a815d0 239 Pfam PF02390 Putative methyltransferase 64 233 1.5E-60 T 14-10-2018 YP_3490 9b430d515d66e9dcced229e8a3a815d0 239 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 24 238 31.119 T 14-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 YP_3490 9b430d515d66e9dcced229e8a3a815d0 239 Gene3D G3DSA:3.40.50.150 30 239 7.7E-72 T 14-10-2018 YP_3490 9b430d515d66e9dcced229e8a3a815d0 239 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 49 238 1.5E-71 T 14-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 YP_2105 4237dde819618e76861d22ae4ecec5b3 98 ProDom PD580032 SHOCK ACID PRECURSOR SIGNAL 3D-STRUCTURE RESPONSE STRESS SECRETED 1 97 6.0E-18 T 14-10-2018 YP_pMT077 912700738e93a4652a47c93b952be3c0 788 Pfam PF06213 Cobalamin biosynthesis protein CobT 11 332 7.9E-75 T 14-10-2018 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 YP_pMT077 912700738e93a4652a47c93b952be3c0 788 Pfam PF11775 Cobalamin biosynthesis protein CobT VWA domain 581 788 8.5E-112 T 14-10-2018 IPR025861 Cobalamin biosynthesis protein CobT VWA domain KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 YP_pMT077 912700738e93a4652a47c93b952be3c0 788 SUPERFAMILY SSF53300 598 767 9.46E-7 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YP_pMT077 912700738e93a4652a47c93b952be3c0 788 PIRSF PIRSF031715 1 788 2.2E-247 T 14-10-2018 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 YP_pMT077 912700738e93a4652a47c93b952be3c0 788 Gene3D G3DSA:3.40.50.410 595 786 1.7E-5 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YP_0013 220c0dfb18deb0d341c2be834496f0cc 185 Gene3D G3DSA:2.20.25.120 61 93 3.8E-58 T 14-10-2018 YP_0013 220c0dfb18deb0d341c2be834496f0cc 185 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 18 151 7.3E-47 T 14-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 YP_0013 220c0dfb18deb0d341c2be834496f0cc 185 Gene3D G3DSA:3.40.50.300 18 173 3.8E-58 T 14-10-2018 YP_0013 220c0dfb18deb0d341c2be834496f0cc 185 SUPERFAMILY SSF52540 15 177 1.32E-23 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_0013 220c0dfb18deb0d341c2be834496f0cc 185 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 18 176 3.7E-43 T 14-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 YP_pMT120 a961d0aa4b59316b1293c6543a640c09 156 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 91 146 1.8E-9 T 14-10-2018 IPR000477 Reverse transcriptase domain YP_pMT120 a961d0aa4b59316b1293c6543a640c09 156 SUPERFAMILY SSF56672 49 144 3.89E-17 T 14-10-2018 YP_1208 10ced6011bea23e54455784824eb097f 588 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 59 391 9.5E-80 T 14-10-2018 IPR003776 YcaO-like domain YP_1208 10ced6011bea23e54455784824eb097f 588 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 11 404 8.4E-160 T 14-10-2018 IPR003776 YcaO-like domain YP_1801 cdee5b8d5ff45e2705aa245b876aa973 225 Pfam PF08348 YheO-like PAS domain 21 130 7.8E-34 T 14-10-2018 IPR013559 YheO-like YP_1801 cdee5b8d5ff45e2705aa245b876aa973 225 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 20 122 2.0E-57 T 14-10-2018 IPR013559 YheO-like YP_1801 cdee5b8d5ff45e2705aa245b876aa973 225 Pfam PF13309 HTH domain 159 216 7.8E-12 T 14-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain YP_2119 f2ff96e64a13aab6da920760ef0253ea 112 Pfam PF00893 Small Multidrug Resistance protein 5 96 2.7E-28 T 14-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 YP_2119 f2ff96e64a13aab6da920760ef0253ea 112 SUPERFAMILY SSF103481 8 107 9.29E-20 T 14-10-2018 YP_2119 f2ff96e64a13aab6da920760ef0253ea 112 Gene3D G3DSA:1.10.3730.20 3 112 7.3E-37 T 14-10-2018 YP_0262 51fc6a74d368285da16d71e6aca2e804 284 Pfam PF17113 Regulatory signalling modulator protein AmpE 1 284 2.7E-163 T 14-10-2018 IPR031347 Protein AmpE YP_3025 a2e4284e90fcd117c08f618dbd5b85b6 126 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 90 106 2.9E-8 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YP_3025 a2e4284e90fcd117c08f618dbd5b85b6 126 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 111 124 2.9E-8 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YP_3025 a2e4284e90fcd117c08f618dbd5b85b6 126 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 56 72 2.9E-8 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YP_3025 a2e4284e90fcd117c08f618dbd5b85b6 126 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 52 124 2.8E-13 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YP_3025 a2e4284e90fcd117c08f618dbd5b85b6 126 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 24 126 13.032 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YP_3025 a2e4284e90fcd117c08f618dbd5b85b6 126 Pfam PF02049 Flagellar hook-basal body complex protein FliE 50 125 2.0E-21 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YP_0611 a7d903900e5490442dae736fc1638023 437 SUPERFAMILY SSF53850 32 432 1.65E-79 T 14-10-2018 YP_0611 a7d903900e5490442dae736fc1638023 437 Gene3D G3DSA:3.40.190.10 31 434 2.5E-75 T 14-10-2018 YP_0611 a7d903900e5490442dae736fc1638023 437 Pfam PF01547 Bacterial extracellular solute-binding protein 45 340 4.8E-36 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein YP_2880 d84abcb29ad88eaf2aae69bd8ecc6acf 136 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 27 47 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site YP_2880 d84abcb29ad88eaf2aae69bd8ecc6acf 136 Pfam PF12528 Type II secretion prepilin peptidase dependent protein C 51 132 7.0E-28 T 14-10-2018 IPR022204 Prepilin peptidase dependent protein C YP_2880 d84abcb29ad88eaf2aae69bd8ecc6acf 136 Pfam PF07963 Prokaryotic N-terminal methylation motif 27 49 1.5E-4 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site YP_0342 2934c28aa439000c764c9932a2262ec6 92 Gene3D G3DSA:1.10.10.10 27 86 1.3E-10 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_0342 2934c28aa439000c764c9932a2262ec6 92 Pfam PF04703 FaeA-like protein 39 75 1.5E-4 T 14-10-2018 IPR006793 FaeA-like protein GO:0006355|GO:0009289 YP_4014 6a1205a0136c371bd648c4ad68511907 461 Pfam PF00860 Permease family 48 421 1.1E-43 T 14-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 YP_4014 6a1205a0136c371bd648c4ad68511907 461 PIRSF PIRSF005353 22 461 8.2E-178 T 14-10-2018 IPR026033 Purine permease PbuG-like YP_2628 7c2c3685c6f5d243ab0ccb01dc83d91d 65 Pfam PF11755 Protein of unknown function (DUF3311) 7 64 2.6E-17 T 14-10-2018 IPR021741 Protein of unknown function DUF3311 YP_1959 359345af6664b45573ba9d2bcbf2025d 125 Pfam PF07023 Protein of unknown function (DUF1315) 40 118 3.1E-26 T 14-10-2018 IPR009749 Protein of unknown function DUF1315 YP_2553 5d49eef17c0ea6c35b1ccf5da52db72f 224 PIRSF PIRSF008159 7 224 3.1E-76 T 14-10-2018 IPR016537 Uncharacterised conserved protein UCP008159, YP_2553 5d49eef17c0ea6c35b1ccf5da52db72f 224 Pfam PF06226 Protein of unknown function (DUF1007) 22 223 4.5E-64 T 14-10-2018 IPR010412 Protein of unknown function DUF1007 YP_1352 d796f9caa36a7b0b02d9aeb24812e914 262 Gene3D G3DSA:3.40.50.720 1 250 5.7E-39 T 14-10-2018 YP_1352 d796f9caa36a7b0b02d9aeb24812e914 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.0E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1352 d796f9caa36a7b0b02d9aeb24812e914 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.0E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1352 d796f9caa36a7b0b02d9aeb24812e914 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.0E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YP_1352 d796f9caa36a7b0b02d9aeb24812e914 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 241 2.1E-32 T 14-10-2018 YP_1352 d796f9caa36a7b0b02d9aeb24812e914 262 SUPERFAMILY SSF51735 9 243 1.4E-43 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_2680 fa71567ddd4565abf0ee7c202bd0ae08 288 Pfam PF04228 Putative neutral zinc metallopeptidase 1 285 1.7E-133 T 14-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative YP_3636 ae08b8903dfa75169799b847bc7ab2df 105 Hamap MF_00910 Cell division protein FtsL [ftsL]. 20 103 17.014 T 14-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 YP_3636 ae08b8903dfa75169799b847bc7ab2df 105 Pfam PF04999 Cell division protein FtsL 11 104 3.5E-34 T 14-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 YP_3636 ae08b8903dfa75169799b847bc7ab2df 105 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 22 103 7.2E-28 T 14-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 YP_2420 45a8f95fc3f5450d6c8f43dbc00269fa 423 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 19 423 7.6E-138 T 14-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) YP_2420 45a8f95fc3f5450d6c8f43dbc00269fa 423 Gene3D G3DSA:2.40.160.60 28 423 9.4E-142 T 14-10-2018 YP_2420 45a8f95fc3f5450d6c8f43dbc00269fa 423 SUPERFAMILY SSF56935 28 423 1.74E-104 T 14-10-2018 YP_0457 7d0f1f75ad0ecfea0514ba015ca1f8fa 191 Pfam PF02342 TerD domain 1 187 2.3E-84 T 14-10-2018 IPR003325 TerD domain YP_0457 7d0f1f75ad0ecfea0514ba015ca1f8fa 191 Gene3D G3DSA:2.60.60.30 20 186 7.1E-75 T 14-10-2018 YP_1065 7c3f3c5736859a056c56c7493b6b831e 180 Pfam PF10554 Ash protein family 13 111 1.8E-24 T 14-10-2018 IPR018880 Bacteriophage P4, Ash protein YP_2360 56fc6812360c8a20be42c9fe714225e0 325 Pfam PF00146 NADH dehydrogenase 17 316 3.8E-120 T 14-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2360 56fc6812360c8a20be42c9fe714225e0 325 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 211 224 - T 14-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2360 56fc6812360c8a20be42c9fe714225e0 325 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 10 323 23.932 T 14-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_2360 56fc6812360c8a20be42c9fe714225e0 325 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 56 71 - T 14-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YP_1726 da636f1ea8e7ec2846a327425e5a4f5e 885 Pfam PF02470 MlaD protein 165 222 1.8E-6 T 14-10-2018 IPR003399 Mce/MlaD YP_1726 da636f1ea8e7ec2846a327425e5a4f5e 885 Pfam PF02470 MlaD protein 282 350 3.6E-6 T 14-10-2018 IPR003399 Mce/MlaD YP_1726 da636f1ea8e7ec2846a327425e5a4f5e 885 Pfam PF02470 MlaD protein 756 815 2.8E-8 T 14-10-2018 IPR003399 Mce/MlaD YP_1726 da636f1ea8e7ec2846a327425e5a4f5e 885 Pfam PF02470 MlaD protein 48 139 1.3E-15 T 14-10-2018 IPR003399 Mce/MlaD YP_1726 da636f1ea8e7ec2846a327425e5a4f5e 885 Pfam PF02470 MlaD protein 643 731 2.7E-10 T 14-10-2018 IPR003399 Mce/MlaD YP_1726 da636f1ea8e7ec2846a327425e5a4f5e 885 Pfam PF02470 MlaD protein 397 454 4.1E-6 T 14-10-2018 IPR003399 Mce/MlaD YP_2328 418cee8065e67993cb7d276e7762e0d9 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 216 1.9E-20 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2328 418cee8065e67993cb7d276e7762e0d9 218 SUPERFAMILY SSF161098 13 201 1.7E-41 T 14-10-2018 IPR035906 MetI-like superfamily YP_2328 418cee8065e67993cb7d276e7762e0d9 218 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 110 6.8E-30 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YP_2328 418cee8065e67993cb7d276e7762e0d9 218 Gene3D G3DSA:1.10.3720.10 1 216 3.0E-52 T 14-10-2018 IPR035906 MetI-like superfamily YP_0803 d1239aee4024af1beb67149cb92dc1f5 55 Pfam PF10689 Protein of unknown function (DUF2496) 6 48 2.0E-23 T 14-10-2018 IPR019630 Protein of unknown function DUF2496, YbaM-related YP_2165 55f391cf91c1fec2f03a88caf6e7eb1d 365 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 344 1.8E-93 T 14-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 YP_2165 55f391cf91c1fec2f03a88caf6e7eb1d 365 SUPERFAMILY SSF51395 1 365 4.45E-125 T 14-10-2018 YP_2165 55f391cf91c1fec2f03a88caf6e7eb1d 365 Gene3D G3DSA:3.20.20.70 3 365 5.0E-143 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_pMT036 df148d7ab57ba69a8818273eeeb3bc52 187 Pfam PF03614 Repressor of phase-1 flagellin 18 184 7.6E-100 T 14-10-2018 IPR003223 Flagellin phase1 repressor GO:0003700|GO:0006355 YP_pMT036 df148d7ab57ba69a8818273eeeb3bc52 187 ProDom PD016683 REPRESSOR TRANSCRIPTION FLIC PLASMID PHASE FLAGELLIN TRANSCRIPTIONAL DNA-BINDING GENE FLAGELLUM 18 184 1.0E-96 T 14-10-2018 IPR003223 Flagellin phase1 repressor GO:0003700|GO:0006355 YP_3668 52632b49181d264d90dc896f52cbe840 121 Pfam PF13665 Domain of unknown function (DUF4150) 18 106 2.3E-12 T 14-10-2018 IPR025425 Domain of unknown function DUF4150 YP_1483 15e2ee5206c4123ec98e15573381b5de 103 Pfam PF13269 Protein of unknown function (DUF4060) 25 97 6.1E-39 T 14-10-2018 IPR025135 Protein of unknown function DUF4060 YP_1399 5fc8588eddcfe547dde6fd80005ee599 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 325 2.5E-49 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_2137 e715f5d9e9ca77ae5439b912fd45ffaa 119 TIGRFAM TIGR02978 phageshock_pspC: phage shock protein C 7 119 3.9E-40 T 14-10-2018 IPR014320 Phage shock protein, PspC YP_2137 e715f5d9e9ca77ae5439b912fd45ffaa 119 Pfam PF04024 PspC domain 8 64 8.0E-18 T 14-10-2018 IPR007168 Phage shock protein, PspC, N-terminal YP_2504 6df7511a3d0fae43bee935527776c3ec 258 SUPERFAMILY SSF88713 15 256 3.04E-93 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 YP_2504 6df7511a3d0fae43bee935527776c3ec 258 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 14 253 42.935 T 14-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 YP_2504 6df7511a3d0fae43bee935527776c3ec 258 Pfam PF03746 LamB/YcsF family 16 248 6.6E-94 T 14-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 YP_2504 6df7511a3d0fae43bee935527776c3ec 258 Gene3D G3DSA:3.20.20.370 14 258 7.2E-101 T 14-10-2018 YP_0035 169ce61ea81d5e4fa013f9a22f5e2baf 469 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 382 402 - T 14-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 YP_0035 169ce61ea81d5e4fa013f9a22f5e2baf 469 Pfam PF00860 Permease family 41 433 1.8E-108 T 14-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 YP_0035 169ce61ea81d5e4fa013f9a22f5e2baf 469 TIGRFAM TIGR03173 pbuX: xanthine permease 46 466 7.0E-127 T 14-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 YP_0035 169ce61ea81d5e4fa013f9a22f5e2baf 469 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 36 464 1.2E-139 T 14-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 YP_pMT022 f1632a62a088150f8c7dfed64ea42226 291 SUPERFAMILY SSF56563 9 288 1.44E-13 T 14-10-2018 YP_1520 6ce15ce526c6cd8c14e3fad1d0010cc6 114 Pfam PF05638 Type VI secretion system effector, Hcp 6 114 4.3E-12 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_1520 6ce15ce526c6cd8c14e3fad1d0010cc6 114 Gene3D G3DSA:2.30.110.20 3 114 4.8E-34 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_1520 6ce15ce526c6cd8c14e3fad1d0010cc6 114 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 113 1.6E-37 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp YP_1520 6ce15ce526c6cd8c14e3fad1d0010cc6 114 SUPERFAMILY SSF141452 3 114 1.2E-20 T 14-10-2018 IPR036624 Hcp1-like superfamily YP_2437 fa4cdcfdc6103e9725aef29d85f256b0 159 Pfam PF04965 Gene 25-like lysozyme 36 136 1.3E-16 T 14-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD YP_2437 fa4cdcfdc6103e9725aef29d85f256b0 159 SUPERFAMILY SSF160719 72 144 1.18E-10 T 14-10-2018 YP_2970 51e809ed3fc3ba176df00537d13f19f3 418 Pfam PF13520 Amino acid permease 10 414 5.3E-31 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_2970 51e809ed3fc3ba176df00537d13f19f3 418 PIRSF PIRSF006060 3 416 3.4E-50 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YP_2970 51e809ed3fc3ba176df00537d13f19f3 418 Gene3D G3DSA:1.20.1740.10 6 417 3.0E-47 T 14-10-2018 YP_2171 7139b488df094e63686ddf3cd0eb22e0 304 SUPERFAMILY SSF54001 167 298 8.34E-40 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily YP_2171 7139b488df094e63686ddf3cd0eb22e0 304 Gene3D G3DSA:3.90.1720.10 98 297 5.7E-42 T 14-10-2018 YP_2171 7139b488df094e63686ddf3cd0eb22e0 304 Pfam PF00877 NlpC/P60 family 186 296 1.1E-31 T 14-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain YP_3720 e002482d613fba49a07899d9f2f1709b 259 Pfam PF03883 Peroxide stress protein YaaA 2 243 3.4E-93 T 14-10-2018 IPR005583 Peroxide stress protein YaaA YP_3720 e002482d613fba49a07899d9f2f1709b 259 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 2 256 38.486 T 14-10-2018 IPR005583 Peroxide stress protein YaaA YP_1804 a85e88ffba92571d07594be52f0c98c7 958 Pfam PF10101 Predicted membrane protein (DUF2339) 177 935 7.1E-140 T 14-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane YP_1804 a85e88ffba92571d07594be52f0c98c7 958 PIRSF PIRSF035905 1 945 0.0 T 14-10-2018 IPR014600 Uncharacterised conserved protein UCP035905, membrane protein YP_3764 d35e0b9c79b5df55e9d275d216e27c5d 410 Pfam PF04932 O-Antigen ligase 194 338 2.7E-16 T 14-10-2018 IPR007016 O-antigen ligase-related YP_0707 48949eddca3d42d2eb7132ad7ead68e5 101 Pfam PF16083 LydA holin phage, holin superfamily III 15 93 4.3E-22 T 14-10-2018 IPR032126 LydA-like holin YP_3755 2011b1147f1eb9eb052634d6a3f1c200 110 ProDom PD058594 MEMBRANE INNER C5447 MAJOR ECS5328 THE SUPERFAMILY PERMEASES STY4905 YJJZ 32 86 7.0E-24 T 14-10-2018 IPR009885 Protein of unknown function DUF1435 YP_3755 2011b1147f1eb9eb052634d6a3f1c200 110 Pfam PF07256 Protein of unknown function (DUF1435) 33 106 3.4E-32 T 14-10-2018 IPR009885 Protein of unknown function DUF1435 YP_3062 f304a8434d2e0f5f13eadbb8255f2aad 100 ProDom PD069399 MEMBRANE INNER YJEO SIMILAR INTEGRAL ORF22 ESCHERICHIA TRANSMEMBRANE COLI 1 100 1.0E-50 T 14-10-2018 IPR022553 Protein of unknown function DUF2645 YP_3062 f304a8434d2e0f5f13eadbb8255f2aad 100 Pfam PF10840 Protein of unknown function (DUF2645) 4 100 1.9E-33 T 14-10-2018 IPR022553 Protein of unknown function DUF2645 YP_2126 c419e214ad182a0a685bcfb289500bcc 538 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 83 104 - T 14-10-2018 IPR023765 Solute-binding protein family 5, conserved site YP_2126 c419e214ad182a0a685bcfb289500bcc 538 SUPERFAMILY SSF53850 32 526 4.6E-140 T 14-10-2018 YP_2126 c419e214ad182a0a685bcfb289500bcc 538 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 78 453 1.8E-86 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain YP_2126 c419e214ad182a0a685bcfb289500bcc 538 Gene3D G3DSA:3.10.105.10 292 507 4.9E-189 T 14-10-2018 YP_2126 c419e214ad182a0a685bcfb289500bcc 538 Gene3D G3DSA:3.40.190.10 41 519 4.9E-189 T 14-10-2018 YP_2126 c419e214ad182a0a685bcfb289500bcc 538 PIRSF PIRSF002741 6 538 2.8E-112 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 YP_2126 c419e214ad182a0a685bcfb289500bcc 538 Gene3D G3DSA:3.90.76.10 67 190 4.9E-189 T 14-10-2018 YP_1432 606ab20f90b412c09a05259e8e184ff2 258 Gene3D G3DSA:3.20.20.70 1 258 3.6E-91 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YP_1432 606ab20f90b412c09a05259e8e184ff2 258 SUPERFAMILY SSF51366 1 257 4.4E-72 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 YP_1432 606ab20f90b412c09a05259e8e184ff2 258 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 256 43.971 T 14-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 YP_1432 606ab20f90b412c09a05259e8e184ff2 258 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 256 4.1E-114 T 14-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 YP_1432 606ab20f90b412c09a05259e8e184ff2 258 Pfam PF00977 Histidine biosynthesis protein 5 239 1.1E-76 T 14-10-2018 IPR006062 Histidine biosynthesis GO:0000105 YP_0805 7a065e003053b9ab04a26dbc52d4c625 126 PIRSF PIRSF016789 2 123 9.6E-50 T 14-10-2018 IPR007401 Protein of unknown function DUF454 YP_0805 7a065e003053b9ab04a26dbc52d4c625 126 Pfam PF04304 Protein of unknown function (DUF454) 3 116 6.0E-41 T 14-10-2018 IPR007401 Protein of unknown function DUF454 YP_1396 0bbc48a4b2e63e833059c5fcc4311715 388 Pfam PF04235 Protein of unknown function (DUF418) 216 374 3.6E-47 T 14-10-2018 IPR007349 Domain of unknown function DUF418 YP_0180 0fa03ef150e62724fa5895700fb9ead4 192 Pfam PF01810 LysE type translocator 8 170 1.2E-15 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 YP_1852 9df01be2e40000612c1aaac806b037ca 280 Pfam PF13316 Protein of unknown function (DUF4087) 26 120 3.5E-39 T 14-10-2018 IPR025145 Protein of unknown function DUF4087 YP_1083 18fedd34ae3524e3e56e85990faa0aad 473 Gene3D G3DSA:2.40.160.10 29 451 6.8E-33 T 14-10-2018 IPR023614 Porin domain superfamily YP_1083 18fedd34ae3524e3e56e85990faa0aad 473 Pfam PF03573 outer membrane porin, OprD family 39 442 2.2E-22 T 14-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 YP_3232 47ac2b8136d5bb9db564377881bc68f7 90 Pfam PF06611 Protein of unknown function (DUF1145) 1 58 6.9E-27 T 14-10-2018 IPR009525 Protein of unknown function DUF1145 YP_2226 26fd68ff51b191d93a0a40c17edef47c 220 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 75 103 - T 14-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 YP_2226 26fd68ff51b191d93a0a40c17edef47c 220 Gene3D G3DSA:1.10.530.10 40 218 2.8E-45 T 14-10-2018 YP_2226 26fd68ff51b191d93a0a40c17edef47c 220 SUPERFAMILY SSF53955 53 217 1.66E-29 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily YP_2226 26fd68ff51b191d93a0a40c17edef47c 220 Pfam PF01464 Transglycosylase SLT domain 57 182 5.8E-29 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 YP_0113 3f031b609d564ef01621e3543b392432 155 Pfam PF05360 yiaA/B two helix domain 16 68 7.4E-21 T 14-10-2018 IPR008024 YiaAB two helix YP_0113 3f031b609d564ef01621e3543b392432 155 Pfam PF05360 yiaA/B two helix domain 79 131 2.1E-22 T 14-10-2018 IPR008024 YiaAB two helix YP_0822 93791331392dfcc213080c32bc7a21c8 380 Gene3D G3DSA:3.40.50.2000 217 380 5.5E-7 T 14-10-2018 YP_0822 93791331392dfcc213080c32bc7a21c8 380 SUPERFAMILY SSF53756 5 343 1.57E-8 T 14-10-2018 YP_0822 93791331392dfcc213080c32bc7a21c8 380 Pfam PF13692 Glycosyl transferases group 1 238 369 1.7E-10 T 14-10-2018 YP_3136 01af90948fa499a2c8fcf342512c2767 135 ProDom PD076479 MEMBRANE INNER YIJD TRANSMEMBRANE Y0323 AAA SIMILAR A ACETYL-COENZYME VV0128 3 115 4.0E-50 T 14-10-2018 IPR009867 Protein of unknown function DUF1422 YP_3136 01af90948fa499a2c8fcf342512c2767 135 Pfam PF07226 Protein of unknown function (DUF1422) 4 115 3.7E-51 T 14-10-2018 IPR009867 Protein of unknown function DUF1422 YP_pMT011 4ea83300469f8879a55288d28a29a1a6 111 Pfam PF05939 Phage minor tail protein 5 108 1.9E-33 T 14-10-2018 IPR010265 Bacteriophage lambda, GpM, minor tail YP_3857 f374b66684a69a6305aab915e7e7271c 651 Pfam PF04632 Fusaric acid resistance protein family 8 649 6.1E-171 T 14-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 YP_3857 f374b66684a69a6305aab915e7e7271c 651 Hamap MF_01545 p-hydroxybenzoic acid efflux pump subunit AaeB [aaeB]. 1 651 55.618 T 14-10-2018 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB GO:0005886|GO:0046942 YP_2409 f32c869cfa4b0cc99d6822c955b7b40d 180 Pfam PF04315 Elongation factor P hydroxylase 11 169 4.8E-78 T 14-10-2018 IPR007411 Elongation factor P hydroxylase YP_0550 595794c186337972b3cc7ca01042129e 246 Gene3D G3DSA:3.10.450.350 150 244 4.0E-14 T 14-10-2018 YP_0550 595794c186337972b3cc7ca01042129e 246 Pfam PF04225 Opacity-associated protein A LysM-like domain 161 245 3.8E-38 T 14-10-2018 IPR007340 Opacity-associated protein A YP_0550 595794c186337972b3cc7ca01042129e 246 Pfam PF08525 Opacity-associated protein A N-terminal motif 89 115 7.0E-7 T 14-10-2018 IPR013731 Opacity-associated protein A, N-terminal YP_3341 92431c2e7543348152181097709e164e 375 Pfam PF13556 PucR C-terminal helix-turn-helix domain 315 373 8.9E-19 T 14-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain YP_3341 92431c2e7543348152181097709e164e 375 Pfam PF05651 Putative sugar diacid recognition 6 139 2.1E-52 T 14-10-2018 IPR008599 Putative sugar diacid recognition YP_3341 92431c2e7543348152181097709e164e 375 Gene3D G3DSA:1.10.10.2840 248 375 1.4E-17 T 14-10-2018 YP_3042 2b988770c3fbb4269f6cfe5f3d57d932 97 Pfam PF10135 Rod binding protein 42 93 9.9E-12 T 14-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal YP_2459 3ac5f7d4dd36c99016c361638e614d47 134 Pfam PF04899 MbeD/MobD like 25 83 2.1E-7 T 14-10-2018 IPR006983 MbeD/MobD-like YP_0667 2bcc2054386d42e562e2e551b588c99e 113 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 5 105 5.3E-17 T 14-10-2018 IPR008407 Branched-chain amino acid transport, AzlD YP_3344 bb92cc3492273dc88615d35cc008b1b5 168 Pfam PF06092 Enterobacterial putative membrane protein (DUF943) 2 165 3.3E-55 T 14-10-2018 IPR010351 Protein of unknown function DUF943 YP_2709 7100ab53246ab4f8099abe4ae877a95e 448 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 248 436 1.2E-7 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2709 7100ab53246ab4f8099abe4ae877a95e 448 Gene3D G3DSA:1.10.3720.10 183 446 1.9E-48 T 14-10-2018 IPR035906 MetI-like superfamily YP_2709 7100ab53246ab4f8099abe4ae877a95e 448 SUPERFAMILY SSF161098 222 434 9.55E-42 T 14-10-2018 IPR035906 MetI-like superfamily YP_0793 e170c44f73704e57c10cc6de67d4d054 67 Pfam PF05321 Haemolysin expression modulating protein 8 64 4.1E-33 T 14-10-2018 IPR007985 Haemolysin expression modulating, HHA YP_0793 e170c44f73704e57c10cc6de67d4d054 67 SUPERFAMILY SSF68989 1 67 1.22E-30 T 14-10-2018 IPR036666 HHA superfamily YP_0793 e170c44f73704e57c10cc6de67d4d054 67 Gene3D G3DSA:1.20.1280.40 1 67 3.7E-37 T 14-10-2018 IPR036666 HHA superfamily YP_0889 71ed0b9a193a1111dcb86f3749db5144 115 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 3 112 1.3E-19 T 14-10-2018 IPR018755 Bacteriophage Mu-like, Gp48 YP_pCRY12 265431a721c92d0510715e61f3eec1bc 357 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 40 250 5.5E-43 T 14-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 YP_1388 6c813179859f7dd1250e99b4ec216fd9 420 Gene3D G3DSA:1.10.287.470 108 235 4.5E-29 T 14-10-2018 YP_1388 6c813179859f7dd1250e99b4ec216fd9 420 Gene3D G3DSA:2.40.50.100 74 269 4.5E-29 T 14-10-2018 YP_1388 6c813179859f7dd1250e99b4ec216fd9 420 Gene3D G3DSA:2.40.30.170 68 342 4.5E-29 T 14-10-2018 YP_1388 6c813179859f7dd1250e99b4ec216fd9 420 Gene3D G3DSA:2.40.420.20 343 404 4.5E-29 T 14-10-2018 YP_1388 6c813179859f7dd1250e99b4ec216fd9 420 Pfam PF13437 HlyD family secretion protein 235 320 3.3E-6 T 14-10-2018 YP_1330 4407ed531de5f95b05bd00aa61082b3f 148 PIRSF PIRSF028777 1 139 8.4E-55 T 14-10-2018 IPR031308 Uncharacterised conserved protein UCP028777 YP_1330 4407ed531de5f95b05bd00aa61082b3f 148 Pfam PF03733 Inner membrane component domain 77 127 2.5E-18 T 14-10-2018 IPR005185 Inner membrane component domain YP_1330 4407ed531de5f95b05bd00aa61082b3f 148 Pfam PF03733 Inner membrane component domain 4 53 2.5E-9 T 14-10-2018 IPR005185 Inner membrane component domain YP_2637 2c67470e11ead9769e4263a73dac0409 291 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 15 275 3.3E-105 T 14-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 YP_2637 2c67470e11ead9769e4263a73dac0409 291 SUPERFAMILY SSF161098 16 268 3.01E-52 T 14-10-2018 IPR035906 MetI-like superfamily YP_2637 2c67470e11ead9769e4263a73dac0409 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 267 1.6E-14 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_2637 2c67470e11ead9769e4263a73dac0409 291 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 19 276 1.3E-112 T 14-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 YP_2637 2c67470e11ead9769e4263a73dac0409 291 Gene3D G3DSA:1.10.3720.10 20 276 6.4E-59 T 14-10-2018 IPR035906 MetI-like superfamily YP_1953 128e946404261603d7649378b6fc13c6 439 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 16 437 41.936 T 14-10-2018 IPR006698 Uncharacterised protein family UPF0229 YP_1953 128e946404261603d7649378b6fc13c6 439 Pfam PF04285 Protein of unknown function (DUF444) 19 435 2.3E-186 T 14-10-2018 IPR006698 Uncharacterised protein family UPF0229 YP_0804 ff66418a3665dc58f7172eeeefcc96b7 178 Pfam PF07445 Primosomal replication protein priC 9 175 3.3E-54 T 14-10-2018 IPR010890 Primosomal replication PriB/PriC YP_0804 ff66418a3665dc58f7172eeeefcc96b7 178 Gene3D G3DSA:1.20.1270.340 1 98 1.4E-33 T 14-10-2018 IPR038338 PriB/PriC superfamily YP_0533 0d53074181791645b278512a944f0d33 102 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 41 96 1.1E-21 T 14-10-2018 IPR019201 Protein of unknown function DUF2065 YP_2888 5c026f872b7bbd6a31f1466faa100f7e 94 Pfam PF13997 YqjK-like protein 13 85 7.6E-30 T 14-10-2018 IPR025612 YqjK-like protein YP_2889 2f1a6977d911fc016aa8da3b0fa16fe6 131 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 16 127 2.1E-20 T 14-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III YP_3217 218afb2e0f04ed78f7d375fde17d162f 206 Pfam PF01810 LysE type translocator 14 202 3.1E-45 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 YP_3217 218afb2e0f04ed78f7d375fde17d162f 206 PIRSF PIRSF006324 1 205 1.9E-54 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 YP_3946 e1a77ff373dd238159d489c245a4fb37 260 Pfam PF06812 ImpA, N-terminal, type VI secretion system 12 113 3.3E-23 T 14-10-2018 IPR010657 ImpA, N-terminal YP_2033 b9a827379177741c89e65449687118e8 688 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 463 591 2.6E-32 T 14-10-2018 IPR025299 CstA, C-terminal domain YP_2033 b9a827379177741c89e65449687118e8 688 Pfam PF02554 Carbon starvation protein CstA 32 407 7.3E-170 T 14-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 YP_0246 09648645fd6123e48e3aa04169044d8e 180 SUPERFAMILY SSF51161 3 175 1.66E-46 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily YP_0246 09648645fd6123e48e3aa04169044d8e 180 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 13 46 8.7E-6 T 14-10-2018 IPR001451 Hexapeptide repeat YP_0246 09648645fd6123e48e3aa04169044d8e 180 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 131 2.1E-8 T 14-10-2018 IPR001451 Hexapeptide repeat YP_0246 09648645fd6123e48e3aa04169044d8e 180 Gene3D G3DSA:2.160.10.10 1 180 4.0E-56 T 14-10-2018 YP_1725 d7ac4c99a1f640006063cf0fc2a8c1ae 184 SMART SM00972 121 181 5.4E-16 T 14-10-2018 IPR007893 Spore coat protein U YP_1725 d7ac4c99a1f640006063cf0fc2a8c1ae 184 Pfam PF05229 Spore Coat Protein U domain 27 181 6.5E-30 T 14-10-2018 IPR007893 Spore coat protein U YP_0791 7ef42871530c7e64b6a097ca0a486947 173 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 48 152 3.1E-41 T 14-10-2018 IPR039366 YscW/ExsB YP_2732 19d8000f7608b2afbab0b1c8abe76828 139 Pfam PF06836 Protein of unknown function (DUF1240) 45 139 9.5E-40 T 14-10-2018 IPR010665 Protein of unknown function DUF1240 YP_0913 2f99f3300ebfa13379343b3996ddb2f7 512 Gene3D G3DSA:1.20.1250.20 6 444 1.1E-14 T 14-10-2018 YP_0913 2f99f3300ebfa13379343b3996ddb2f7 512 Pfam PF13347 MFS/sugar transport protein 17 448 1.2E-48 T 14-10-2018 YP_0913 2f99f3300ebfa13379343b3996ddb2f7 512 SUPERFAMILY SSF103473 12 446 3.79E-30 T 14-10-2018 IPR036259 MFS transporter superfamily YP_1242 d6a0a01660040c52746bb85e6203b804 191 Pfam PF12883 Protein of unknown function (DUF3828) 41 174 2.0E-13 T 14-10-2018 IPR024289 Domain of unknown function DUF3828 YP_1303 6c623d3db62da4b37402f3c267d706c8 321 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 31 316 3.2E-22 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 YP_1303 6c623d3db62da4b37402f3c267d706c8 321 SUPERFAMILY SSF52283 5 137 2.84E-26 T 14-10-2018 YP_1303 6c623d3db62da4b37402f3c267d706c8 321 Gene3D G3DSA:3.40.50.720 104 290 3.1E-94 T 14-10-2018 YP_1303 6c623d3db62da4b37402f3c267d706c8 321 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 113 289 9.7E-57 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 YP_1303 6c623d3db62da4b37402f3c267d706c8 321 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 199 221 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YP_1303 6c623d3db62da4b37402f3c267d706c8 321 Gene3D G3DSA:3.40.50.720 31 314 3.1E-94 T 14-10-2018 YP_1303 6c623d3db62da4b37402f3c267d706c8 321 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 228 244 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YP_1303 6c623d3db62da4b37402f3c267d706c8 321 SUPERFAMILY SSF51735 106 289 2.36E-53 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1644 c71ac5fd43b73d437b3cc95c9f10ba46 193 Pfam PF11198 Protein of unknown function (DUF2857) 6 182 2.6E-63 T 14-10-2018 IPR021364 Protein of unknown function DUF2857 YP_1403 7f0a287721cb51024bd8d83e486d6d30 231 Pfam PF04172 LrgB-like family 12 223 2.5E-78 T 14-10-2018 IPR007300 CidB/LrgB family YP_1403 7f0a287721cb51024bd8d83e486d6d30 231 TIGRFAM TIGR00659 TIGR00659: TIGR00659 family protein 4 226 5.0E-98 T 14-10-2018 IPR005261 Conserved hypothetical protein CHP00659 YP_2999 05174660794412d7a6166c32071c3ba5 518 SUPERFAMILY SSF53300 160 498 3.85E-12 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YP_3451 f61d6cec327329b2a2b42c00b00bf349 407 Pfam PF07690 Major Facilitator Superfamily 22 359 4.9E-20 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_3451 f61d6cec327329b2a2b42c00b00bf349 407 SUPERFAMILY SSF103473 20 396 9.68E-31 T 14-10-2018 IPR036259 MFS transporter superfamily YP_3451 f61d6cec327329b2a2b42c00b00bf349 407 Gene3D G3DSA:1.20.1250.20 14 391 1.6E-26 T 14-10-2018 YP_pMT082 12e400cc992f0393566b7a6da3324950 170 Gene3D G3DSA:2.60.40.1310 22 170 4.5E-83 T 14-10-2018 IPR038699 F1 capsule antigen superfamily YP_pMT082 12e400cc992f0393566b7a6da3324950 170 SUPERFAMILY SSF49401 35 170 3.23E-83 T 14-10-2018 IPR008966 Adhesion domain superfamily YP_pMT082 12e400cc992f0393566b7a6da3324950 170 Pfam PF09255 Caf1 Capsule antigen 35 170 1.0E-92 T 14-10-2018 IPR015335 F1 capsule antigen YP_pCD93 1e3668460d0e830778ac5af61ed54bb7 771 Pfam PF01526 Tn3 transposase DDE domain 356 745 8.1E-149 T 14-10-2018 IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 YP_pCD93 1e3668460d0e830778ac5af61ed54bb7 771 Pfam PF13700 Domain of unknown function (DUF4158) 5 172 7.4E-53 T 14-10-2018 IPR025296 Domain of unknown function DUF4158 YP_3072 7baf0474ab1c1ceb0a05337c610cdf3e 309 Pfam PF07148 Maltose operon periplasmic protein precursor (MalM) 80 212 3.9E-53 T 14-10-2018 IPR010794 Maltose operon periplasmic GO:0008643|GO:0042597 YP_2838 2170d9d6295084b351d8be90c0133060 138 SUPERFAMILY SSF46894 43 118 9.35E-6 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YP_2838 2170d9d6295084b351d8be90c0133060 138 Gene3D G3DSA:1.10.10.10 27 121 9.0E-7 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YP_1210 e2110bb153029613cd97b4f3cd88fad8 784 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 35 783 0.0 T 14-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 YP_1210 e2110bb153029613cd97b4f3cd88fad8 784 Pfam PF01228 Glycine radical 654 765 3.7E-43 T 14-10-2018 IPR001150 Glycine radical domain GO:0003824 YP_1210 e2110bb153029613cd97b4f3cd88fad8 784 SUPERFAMILY SSF51998 28 782 2.66E-289 T 14-10-2018 YP_1210 e2110bb153029613cd97b4f3cd88fad8 784 Pfam PF02901 Pyruvate formate lyase-like 48 638 1.3E-205 T 14-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 YP_1210 e2110bb153029613cd97b4f3cd88fad8 784 Gene3D G3DSA:3.20.70.20 26 784 0.0 T 14-10-2018 YP_1210 e2110bb153029613cd97b4f3cd88fad8 784 PIRSF PIRSF000379 32 784 0.0 T 14-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 YP_1210 e2110bb153029613cd97b4f3cd88fad8 784 ProSitePatterns PS00850 Glycine radical domain signature. 754 762 - T 14-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YP_3087 0ef361892d7ed64e494c81749c00dfdf 435 SUPERFAMILY SSF51621 5 435 8.52E-156 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YP_3087 0ef361892d7ed64e494c81749c00dfdf 435 PIRSF PIRSF001362 1 435 2.1E-224 T 14-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 YP_3087 0ef361892d7ed64e494c81749c00dfdf 435 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 257 435 2.4E-89 T 14-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 YP_3087 0ef361892d7ed64e494c81749c00dfdf 435 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 9 256 2.3E-116 T 14-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 YP_3087 0ef361892d7ed64e494c81749c00dfdf 435 ProSitePatterns PS00161 Isocitrate lyase signature. 194 199 - T 14-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 YP_3087 0ef361892d7ed64e494c81749c00dfdf 435 Pfam PF00463 Isocitrate lyase family 258 435 5.1E-50 T 14-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 YP_3087 0ef361892d7ed64e494c81749c00dfdf 435 Pfam PF00463 Isocitrate lyase family 9 256 8.6E-63 T 14-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 YP_3087 0ef361892d7ed64e494c81749c00dfdf 435 Gene3D G3DSA:3.20.20.60 1 418 9.2E-190 T 14-10-2018 YP_2302 8f04f8db89407d521a8e889a8bd35cee 134 Pfam PF14106 Domain of unknown function (DUF4279) 13 127 2.3E-29 T 14-10-2018 IPR025459 Protein of unknown function DUF4279 YP_3207 666920baa373b571102b75c3907a5ae5 228 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 69 3.4E-5 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YP_3207 666920baa373b571102b75c3907a5ae5 228 Gene3D G3DSA:1.10.357.10 12 130 9.7E-13 T 14-10-2018 YP_3207 666920baa373b571102b75c3907a5ae5 228 SUPERFAMILY SSF46689 19 80 4.61E-9 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_1371 f872a627ece848e446f259c529453514 1140 Pfam PF06761 Intracellular multiplication and human macrophage-killing 418 735 2.7E-71 T 14-10-2018 IPR009612 ImcF-related YP_1371 f872a627ece848e446f259c529453514 1140 Pfam PF06744 Type VI secretion protein IcmF C-terminal 868 1066 4.6E-57 T 14-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal YP_2232 61658c4b0522d65c1f618cee69f377a1 184 Pfam PF14002 YniB-like protein 15 179 6.1E-80 T 14-10-2018 IPR025229 YniB-like protein YP_2232 61658c4b0522d65c1f618cee69f377a1 184 ProDom PD035714 MEMBRANE REGULATOR YNIB TRANSMEMBRANE YFEABCD YFEE PROBABLE LOCUS ESCHERICHIA ECS2432 1 181 1.0E-101 T 14-10-2018 YP_1420 3c67f5573b50f52c9f10930324e93b19 181 Pfam PF13523 Acetyltransferase (GNAT) domain 15 156 7.0E-45 T 14-10-2018 YP_1420 3c67f5573b50f52c9f10930324e93b19 181 SMART SM01006 10 59 1.1E-9 T 14-10-2018 IPR019432 Siderophore biosynthesis protein, conserved domain YP_1420 3c67f5573b50f52c9f10930324e93b19 181 Gene3D G3DSA:3.40.630.30 2 172 6.0E-48 T 14-10-2018 YP_1420 3c67f5573b50f52c9f10930324e93b19 181 SUPERFAMILY SSF55729 5 170 4.98E-44 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_0388 7bd69aafb30b38fd88d5f4e68101411b 297 Pfam PF01578 Cytochrome C assembly protein 71 295 2.4E-41 T 14-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 YP_0461 ca74a8fb952f8280a6db20029aef5a46 85 SUPERFAMILY SSF103473 21 83 1.7E-5 T 14-10-2018 IPR036259 MFS transporter superfamily YP_3733 15aa3bdb4df73834110726c17f80446f 207 Pfam PF13689 Domain of unknown function (DUF4154) 63 201 5.6E-33 T 14-10-2018 IPR025293 YfiR-like YP_2166 2f0c7cc8fe3d0d3e28e689c7806436e0 984 Gene3D G3DSA:2.180.10.10 1 689 4.8E-259 T 14-10-2018 YP_2166 2f0c7cc8fe3d0d3e28e689c7806436e0 984 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 609 689 2.3E-26 T 14-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 YP_1289 3ec58838c371b6ea6f2ef839a07f8c94 163 Gene3D G3DSA:2.60.40.3590 49 163 1.5E-56 T 14-10-2018 YP_2036 04b3770ded4ae84ac9ebe069e090e067 333 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 207 4.2E-19 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YP_2036 04b3770ded4ae84ac9ebe069e090e067 333 Gene3D G3DSA:3.40.50.720 7 306 1.1E-113 T 14-10-2018 YP_2036 04b3770ded4ae84ac9ebe069e090e067 333 Gene3D G3DSA:3.90.25.10 179 316 1.1E-113 T 14-10-2018 YP_2036 04b3770ded4ae84ac9ebe069e090e067 333 SUPERFAMILY SSF51735 2 319 8.37E-44 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily YP_1829 41b768e5e40d747e81e1d7e20af7775f 283 Pfam PF00753 Metallo-beta-lactamase superfamily 51 215 1.2E-12 T 14-10-2018 IPR001279 Metallo-beta-lactamase YP_1829 41b768e5e40d747e81e1d7e20af7775f 283 SUPERFAMILY SSF56281 41 280 5.5E-27 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_1829 41b768e5e40d747e81e1d7e20af7775f 283 Gene3D G3DSA:3.60.15.10 17 283 1.6E-37 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YP_3346 fc1a9b5432a21ce0a632ce7387c6a13f 289 TIGRFAM TIGR03034 TIGR03034: conserved hypothetical protein 17 286 3.7E-129 T 14-10-2018 IPR017483 Conserved hypothetical protein CHP03034 YP_3346 fc1a9b5432a21ce0a632ce7387c6a13f 289 Pfam PF11692 Protein of unknown function (DUF3289) 18 286 6.4E-116 T 14-10-2018 IPR017483 Conserved hypothetical protein CHP03034 YP_3906 61fa7ac68d136268efbdc5c5a11e3256 391 SUPERFAMILY SSF46565 249 289 4.45E-5 T 14-10-2018 IPR036869 Chaperone J-domain superfamily YP_3155 dacf05c150f43ad619317dd0801fa54a 304 TIGRFAM TIGR03034 TIGR03034: conserved hypothetical protein 23 297 1.2E-147 T 14-10-2018 IPR017483 Conserved hypothetical protein CHP03034 YP_3155 dacf05c150f43ad619317dd0801fa54a 304 Pfam PF11692 Protein of unknown function (DUF3289) 25 297 2.0E-116 T 14-10-2018 IPR017483 Conserved hypothetical protein CHP03034 YP_1721 9eee3d82bfa3e5c3375c386b10bc3d3a 815 Gene3D G3DSA:2.60.40.3110 244 330 6.7E-8 T 14-10-2018 YP_1721 9eee3d82bfa3e5c3375c386b10bc3d3a 815 Pfam PF13953 PapC C-terminal domain 739 801 2.8E-11 T 14-10-2018 IPR025949 PapC-like, C-terminal domain YP_1721 9eee3d82bfa3e5c3375c386b10bc3d3a 815 Pfam PF00577 Outer membrane usher protein 234 712 9.3E-30 T 14-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YP_1721 9eee3d82bfa3e5c3375c386b10bc3d3a 815 Gene3D G3DSA:2.60.40.2610 643 733 1.0E-9 T 14-10-2018 YP_2179 aaf62963985984edcbdd28a94776fba1 457 PIRSF PIRSF006603 5 455 1.5E-62 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 YP_2179 aaf62963985984edcbdd28a94776fba1 457 Pfam PF01554 MatE 17 177 1.6E-37 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 YP_2179 aaf62963985984edcbdd28a94776fba1 457 Pfam PF01554 MatE 244 405 5.8E-37 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 YP_2179 aaf62963985984edcbdd28a94776fba1 457 Hamap MF_00400 Multidrug resistance protein MdtK [mdtK]. 1 457 51.021 T 14-10-2018 IPR022913 Multidrug resistance protein MdtK YP_2179 aaf62963985984edcbdd28a94776fba1 457 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 422 2.3E-119 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 YP_2595 8ca86850cb89e4b356547d220430d845 218 Gene3D G3DSA:3.40.50.10610 23 189 6.1E-69 T 14-10-2018 YP_2595 8ca86850cb89e4b356547d220430d845 218 Pfam PF05643 Putative bacterial lipoprotein (DUF799) 10 209 8.9E-98 T 14-10-2018 IPR008517 Protein of unknown function DUF799 YP_pCD29 e168cdadc8260d35166558ca92cc7df0 66 Gene3D G3DSA:1.20.5.420 2 66 1.1E-39 T 14-10-2018 YP_pCD29 e168cdadc8260d35166558ca92cc7df0 66 TIGRFAM TIGR02501 type_III_yscE: type III secretion system protein, YseE family 1 66 1.3E-26 T 14-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 YP_pCD29 e168cdadc8260d35166558ca92cc7df0 66 Pfam PF08988 Type III secretion system, cytoplasmic E component of needle 1 64 7.1E-24 T 14-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 YP_pCD16 71a251119ff6e0aac42078a370c6dce4 68 Pfam PF13817 IS66 C-terminal element 25 62 5.3E-18 T 14-10-2018 IPR039552 Transposase IS66, C-terminal YP_2985 02071d5f77d07bd6609a4cccf10e0e1c 194 SUPERFAMILY SSF52218 1 191 1.06E-41 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_2985 02071d5f77d07bd6609a4cccf10e0e1c 194 Gene3D G3DSA:3.40.50.360 1 194 2.6E-65 T 14-10-2018 IPR029039 Flavoprotein-like superfamily YP_2985 02071d5f77d07bd6609a4cccf10e0e1c 194 Pfam PF02525 Flavodoxin-like fold 3 188 3.4E-36 T 14-10-2018 IPR003680 Flavodoxin-like fold YP_3420 9fe015ca031a999ef2d4a052325d2087 518 Pfam PF03806 AbgT putative transporter family 14 514 3.3E-159 T 14-10-2018 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 YP_0363 d4a0ffaada0197cae97c2d9ae8a3d281 307 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 22 297 1.5E-98 T 14-10-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 YP_1163 a40d0965b25ef2ad8b040a21c9a6fa8b 330 Pfam PF00248 Aldo/keto reductase family 17 309 1.6E-73 T 14-10-2018 IPR023210 NADP-dependent oxidoreductase domain YP_1163 a40d0965b25ef2ad8b040a21c9a6fa8b 330 SUPERFAMILY SSF51430 2 315 1.23E-101 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_1163 a40d0965b25ef2ad8b040a21c9a6fa8b 330 Gene3D G3DSA:3.20.20.100 2 329 5.9E-118 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YP_1589 43e257bb9bdbe60253bbf26ac64651f6 232 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 1 231 1.7E-102 T 14-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 YP_1589 43e257bb9bdbe60253bbf26ac64651f6 232 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 154 232 7.8E-27 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YP_1589 43e257bb9bdbe60253bbf26ac64651f6 232 SUPERFAMILY SSF117143 65 194 5.62E-36 T 14-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YP_1589 43e257bb9bdbe60253bbf26ac64651f6 232 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 108 2.4E-35 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YP_1589 43e257bb9bdbe60253bbf26ac64651f6 232 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 118 215 1.8E-29 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YP_pMT010 849bd5e8e73efc995e755299c0dac83f 243 Pfam PF05100 Phage minor tail protein L 38 242 1.5E-97 T 14-10-2018 IPR006487 Bacteriophage lambda, GpL, minor tail YP_pMT010 849bd5e8e73efc995e755299c0dac83f 243 TIGRFAM TIGR01600 phage_tail_L: phage minor tail protein L 17 242 2.8E-123 T 14-10-2018 IPR006487 Bacteriophage lambda, GpL, minor tail YP_0416 32ccc5c3faeb60fe4802a0c4d9cde4a0 83 TIGRFAM TIGR02497 yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain 45 83 2.2E-22 T 14-10-2018 IPR012670 Type III secretion system, YscI/HrpB GO:0009306 YP_0030 4d98f618e344e6e2f6fed8265cd6dc3e 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 143 8.0E-53 T 14-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 YP_0030 4d98f618e344e6e2f6fed8265cd6dc3e 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 4.6E-68 T 14-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 YP_0030 4d98f618e344e6e2f6fed8265cd6dc3e 145 Gene3D G3DSA:3.50.80.10 1 145 6.1E-56 T 14-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily YP_0030 4d98f618e344e6e2f6fed8265cd6dc3e 145 SUPERFAMILY SSF69500 1 144 6.54E-56 T 14-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily YP_0030 4d98f618e344e6e2f6fed8265cd6dc3e 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 34.707 T 14-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 YP_2296 2782f5287f0eebcbd4bb9d0a60240a47 478 Gene3D G3DSA:3.40.190.10 204 455 8.8E-107 T 14-10-2018 YP_2296 2782f5287f0eebcbd4bb9d0a60240a47 478 Gene3D G3DSA:3.40.190.10 88 434 8.8E-107 T 14-10-2018 YP_2296 2782f5287f0eebcbd4bb9d0a60240a47 478 Pfam PF13416 Bacterial extracellular solute-binding protein 106 414 2.0E-34 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein YP_2296 2782f5287f0eebcbd4bb9d0a60240a47 478 SUPERFAMILY SSF53850 72 477 1.52E-61 T 14-10-2018 YP_0991 b1ca60714ed77d228333473c7b44de7e 733 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 70 554 4.5E-175 T 14-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 YP_0991 b1ca60714ed77d228333473c7b44de7e 733 ProSitePatterns PS01303 BCCT family of transporters signature. 371 380 - T 14-10-2018 IPR018093 BCCT transporter, conserved site YP_0991 b1ca60714ed77d228333473c7b44de7e 733 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 108 555 1.4E-175 T 14-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 YP_1851 e5ece41c888b3461daf3950f325dc424 231 Pfam PF14358 Domain of unknown function (DUF4405) 73 131 1.3E-13 T 14-10-2018 IPR025517 Domain of unknown function DUF4405 YP_1851 e5ece41c888b3461daf3950f325dc424 231 SUPERFAMILY SSF81342 16 133 2.2E-5 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 YP_2766 779e759b3fa2554977960eff4be83b71 503 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 36 471 3.1E-85 T 14-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 YP_2766 779e759b3fa2554977960eff4be83b71 503 Gene3D G3DSA:1.10.4160.10 20 485 4.6E-109 T 14-10-2018 IPR038271 Purine-cytosine permease superfamily YP_1102 8f639699b998956608f1446501084aa5 166 Pfam PF07295 Zinc-ribbon containing domain 20 163 3.8E-54 T 14-10-2018 IPR009912 Zinc-ribbon containing domain YP_1994 e14c0f10b5f1592b22c441d586064e53 149 SUPERFAMILY SSF54637 15 137 4.84E-39 T 14-10-2018 IPR029069 HotDog domain superfamily YP_1994 e14c0f10b5f1592b22c441d586064e53 149 Pfam PF03061 Thioesterase superfamily 33 104 4.1E-18 T 14-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 YP_1994 e14c0f10b5f1592b22c441d586064e53 149 Gene3D G3DSA:3.10.129.10 1 145 3.8E-44 T 14-10-2018 YP_2946 c729730cb4b9116eb163155a5ddb4d8c 100 Gene3D G3DSA:3.30.70.100 1 100 2.1E-41 T 14-10-2018 YP_2946 c729730cb4b9116eb163155a5ddb4d8c 100 SUPERFAMILY SSF54909 3 96 1.98E-32 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel YP_2946 c729730cb4b9116eb163155a5ddb4d8c 100 Pfam PF08803 Putative mono-oxygenase ydhR 4 99 1.7E-42 T 14-10-2018 IPR014910 Putative monooxygenase YdhR YP_0930 249033f6ae72e31759b13ae9c0ad6e09 180 SUPERFAMILY SSF56925 38 180 2.04E-11 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YP_0930 249033f6ae72e31759b13ae9c0ad6e09 180 Pfam PF07437 YfaZ precursor 1 180 1.2E-91 T 14-10-2018 IPR009998 YfaZ YP_3188 d3426ed6d449328527badf9c1da76fb2 361 Hamap MF_01002 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [wecF]. 1 361 68.082 T 14-10-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 YP_3188 d3426ed6d449328527badf9c1da76fb2 361 Pfam PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 1 357 8.6E-181 T 14-10-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 YP_3975 b7437e96ef772d3203b84ebae9b6879c 158 Pfam PF10517 Electron transfer DM13 62 157 8.2E-22 T 14-10-2018 IPR019545 DM13 domain YP_0075 d51b23831703fcf0a70c52f3025c4843 162 Gene3D G3DSA:1.20.120.1490 47 155 4.7E-40 T 14-10-2018 YP_0075 d51b23831703fcf0a70c52f3025c4843 162 PIRSF PIRSF034445 1 152 6.7E-33 T 14-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 YP_0075 d51b23831703fcf0a70c52f3025c4843 162 Pfam PF07813 LTXXQ motif family protein 45 142 2.5E-23 T 14-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 YP_1937 64fc9be5f5ac632ab262e03078326702 187 SMART SM01040 11 108 1.4E-21 T 14-10-2018 IPR003497 BRO N-terminal domain YP_1937 64fc9be5f5ac632ab262e03078326702 187 Pfam PF02498 BRO family, N-terminal domain 15 104 1.1E-8 T 14-10-2018 IPR003497 BRO N-terminal domain YP_0890 fc3e89d50a35d64f401aad9fe93d6b72 86 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 12 76 1.4E-15 T 14-10-2018 IPR018755 Bacteriophage Mu-like, Gp48 YP_3258 5b6a82b3f5c1a77f4ac2c5a9e93d3777 318 Pfam PF03547 Membrane transport protein 168 310 2.7E-15 T 14-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 YP_2053 dba294b69d4abed096169e54fefd6359 354 Pfam PF02653 Branched-chain amino acid transport system / permease component 84 341 7.5E-44 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_0010 1ffce76e3e947ba91b29058f74b16c2b 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 5.8E-7 T 14-10-2018 YP_0010 1ffce76e3e947ba91b29058f74b16c2b 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 135 159 5.8E-7 T 14-10-2018 YP_0010 1ffce76e3e947ba91b29058f74b16c2b 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 105 125 5.8E-7 T 14-10-2018 YP_0010 1ffce76e3e947ba91b29058f74b16c2b 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 396 415 5.8E-7 T 14-10-2018 YP_0010 1ffce76e3e947ba91b29058f74b16c2b 474 Pfam PF07690 Major Facilitator Superfamily 16 405 5.9E-43 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YP_0010 1ffce76e3e947ba91b29058f74b16c2b 474 Gene3D G3DSA:1.20.1250.20 256 455 4.1E-13 T 14-10-2018 YP_0010 1ffce76e3e947ba91b29058f74b16c2b 474 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 414 1.6E-71 T 14-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 YP_0010 1ffce76e3e947ba91b29058f74b16c2b 474 Gene3D G3DSA:1.20.1720.10 13 247 8.1E-43 T 14-10-2018 YP_0010 1ffce76e3e947ba91b29058f74b16c2b 474 SUPERFAMILY SSF103473 13 452 6.67E-58 T 14-10-2018 IPR036259 MFS transporter superfamily YP_3726 66844b7c179158fcbce27dfc838788dd 155 Pfam PF05981 CreA protein 24 155 1.8E-57 T 14-10-2018 IPR010292 Uncharacterised protein family CreA YP_3726 66844b7c179158fcbce27dfc838788dd 155 PIRSF PIRSF003174 1 155 2.5E-66 T 14-10-2018 IPR010292 Uncharacterised protein family CreA YP_3783 945915502f6e7e837f6bcd9a813baddd 348 Pfam PF01435 Peptidase family M48 157 340 1.3E-26 T 14-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 YP_3142 f66a2a0fc388a6977507053ba7f48272 339 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 322 1.2E-41 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_3104 15dc8c350ec438a37bae5ce4f185ef11 265 SUPERFAMILY SSF69572 5 263 2.62E-79 T 14-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 YP_3104 15dc8c350ec438a37bae5ce4f185ef11 265 Gene3D G3DSA:3.40.50.720 7 264 7.0E-94 T 14-10-2018 YP_3104 15dc8c350ec438a37bae5ce4f185ef11 265 Pfam PF00899 ThiF family 15 258 1.1E-61 T 14-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 YP_1481 6ca6708eef33db828c045c7788b6fe41 93 Pfam PF13974 YebO-like protein 18 93 4.1E-29 T 14-10-2018 IPR025594 YebO-like protein YP_pMT110 541ebed67319a6c80f05fed52950058f 48 Pfam PF13438 Domain of unknown function (DUF4113) 19 45 9.9E-12 T 14-10-2018 IPR025188 Domain of unknown function DUF4113 YP_2393 1ad16b1a4c89ff512c3f156bd7f258ab 169 Pfam PF02674 Colicin V production protein 4 142 3.0E-36 T 14-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 YP_3201 d500e1f4e118acf6954aa9c9c00d25d8 62 Pfam PF13627 Prokaryotic lipoprotein-attachment site 10 29 9.6E-9 T 14-10-2018 IPR032831 Prokaryotic lipoprotein-attachment site YP_1934 649761ebb219e9801692a943a4f86464 201 Pfam PF05766 Bacteriophage Lambda NinG protein 3 196 5.1E-83 T 14-10-2018 IPR008713 Bacteriophage lambda NinG YP_0938 d46798700a74102c12a4e39407998a8e 278 SUPERFAMILY SSF161098 69 259 6.67E-32 T 14-10-2018 IPR035906 MetI-like superfamily YP_0938 d46798700a74102c12a4e39407998a8e 278 Gene3D G3DSA:1.10.3720.10 67 266 1.0E-26 T 14-10-2018 IPR035906 MetI-like superfamily YP_0938 d46798700a74102c12a4e39407998a8e 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 265 5.9E-22 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_0429 97f6a7ce92d8fbdb59b3e5953bbe00fc 404 Pfam PF04143 Sulphur transport 5 160 9.6E-25 T 14-10-2018 IPR007272 Sulphur transport domain YP_0429 97f6a7ce92d8fbdb59b3e5953bbe00fc 404 Pfam PF04143 Sulphur transport 237 394 1.1E-24 T 14-10-2018 IPR007272 Sulphur transport domain YP_pMT063 c181f721643cc8ee31361e91bf23abed 123 Pfam PF10765 Protein of unknown function (DUF2591) 3 115 1.3E-33 T 14-10-2018 IPR019701 Bacteriophage P22, NinX YP_2159 22f70820e7e280f1621dc4508ab88494 155 Pfam PF05433 Glycine zipper 2TM domain 62 102 3.2E-7 T 14-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 YP_2213 c738566ad5e8d541cb366667f0470f95 152 Pfam PF10697 Protein of unknown function (DUF2502) 23 102 9.5E-34 T 14-10-2018 IPR019638 Protein of unknown function DUF2502 YP_3539 de268af37d90ea40f248ad744256f18a 495 Pfam PF10022 Uncharacterized protein conserved in bacteria (DUF2264) 63 408 7.1E-86 T 14-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 YP_3539 de268af37d90ea40f248ad744256f18a 495 PIRSF PIRSF014753 37 488 2.1E-91 T 14-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 YP_1783 20940f7e851da2940206dbd176f66a2f 177 Pfam PF10777 Inner membrane protein YlaC 1 153 2.3E-72 T 14-10-2018 IPR019713 Inner membrane protein YlaC YP_1606 ec62b062abcbe2c8a285fc6e63443244 113 Pfam PF10709 Protein of unknown function (DUF2511) 25 111 4.0E-45 T 14-10-2018 IPR019648 Protein of unknown function DUF2511 YP_1780 c72ca295c3932c1c514085635a83233a 299 Pfam PF11004 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase 25 298 9.4E-113 T 14-10-2018 IPR021266 Kdo hydroxylase YP_1263 75c82b9022afd1236d35c1e9dbb02cb8 161 Pfam PF10722 Putative bacterial sensory transduction regulator 9 132 1.4E-14 T 14-10-2018 IPR019660 Putative sensory transduction regulator YbjN YP_1147 018f9f7305def5abf777f4a193060abf 146 Pfam PF06836 Protein of unknown function (DUF1240) 52 145 3.4E-38 T 14-10-2018 IPR010665 Protein of unknown function DUF1240 YP_3660 c647ae4bef35264332401bcefab4ff42 255 Pfam PF09335 SNARE associated Golgi protein 36 159 1.5E-19 T 14-10-2018 IPR032816 SNARE associated Golgi protein YP_1518 4173527e61bc1254a6912816ed03463f 148 Pfam PF01527 Transposase 10 42 2.3E-5 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 YP_1518 4173527e61bc1254a6912816ed03463f 148 Pfam PF01527 Transposase 48 117 2.6E-8 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 YP_1518 4173527e61bc1254a6912816ed03463f 148 SUPERFAMILY SSF46689 8 53 5.02E-5 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YP_pPCP10 112eb3b5001758cbbe111f761423927c 90 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 2 80 7.1E-20 T 14-10-2018 IPR009241 Toxin HigB-like YP_3316 179154baa85cdc8821fcc6bedced6e7e 427 Pfam PF02447 GntP family permease 1 426 2.9E-179 T 14-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 YP_3316 179154baa85cdc8821fcc6bedced6e7e 427 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 1 427 8.4E-193 T 14-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 YP_3316 179154baa85cdc8821fcc6bedced6e7e 427 PIRSF PIRSF002746 1 427 1.8E-156 T 14-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 YP_0348 04496d2ff4447d138832e930846f886f 395 Pfam PF07906 ShET2 enterotoxin, N-terminal region 10 280 4.2E-106 T 14-10-2018 IPR012927 ShET2 enterotoxin, N-terminal YP_3680 3ae9846a38b6e114b168de7d17d80d3f 337 Pfam PF06812 ImpA, N-terminal, type VI secretion system 21 129 4.5E-12 T 14-10-2018 IPR010657 ImpA, N-terminal YP_2580 2aaed266e1eb2e1ef218dda9dcb8f3f9 560 PRINTS PR01021 OMPA domain signature 489 505 5.6E-6 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YP_2580 2aaed266e1eb2e1ef218dda9dcb8f3f9 560 PRINTS PR01021 OMPA domain signature 474 489 5.6E-6 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YP_2580 2aaed266e1eb2e1ef218dda9dcb8f3f9 560 SUPERFAMILY SSF103088 440 547 2.09E-27 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_2580 2aaed266e1eb2e1ef218dda9dcb8f3f9 560 Pfam PF00691 OmpA family 441 539 7.5E-18 T 14-10-2018 IPR006665 OmpA-like domain YP_2580 2aaed266e1eb2e1ef218dda9dcb8f3f9 560 Gene3D G3DSA:3.30.1330.60 411 554 6.6E-30 T 14-10-2018 IPR036737 OmpA-like domain superfamily YP_3003 d71e5b6158a96229af4994d465e0b558 277 Pfam PF00482 Type II secretion system (T2SS), protein F 135 263 5.3E-10 T 14-10-2018 IPR018076 Type II secretion system F domain YP_2133 edb11f99935fcc9dab09632702c036ed 152 Pfam PF08808 RES domain 2 147 1.4E-24 T 14-10-2018 IPR014914 RES domain YP_2133 edb11f99935fcc9dab09632702c036ed 152 SMART SM00953 15 140 7.6E-34 T 14-10-2018 IPR014914 RES domain YP_3285 ab68d13dfe36767fd914be7e50f42599 483 Pfam PF02386 Cation transport protein 37 477 5.0E-92 T 14-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 YP_3285 ab68d13dfe36767fd914be7e50f42599 483 PIRSF PIRSF006247 1 483 3.5E-182 T 14-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 YP_3285 ab68d13dfe36767fd914be7e50f42599 483 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 84 466 4.3E-126 T 14-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 YP_pCD54 cf1268a5e8f8ef87d76aac45526006f2 401 Pfam PF04888 Secretion system effector C (SseC) like family 107 396 2.6E-56 T 14-10-2018 IPR006972 Secretion system effector C, SseC-like GO:0009405 YP_2634 8d1c73c9e7f31f4a720535d4b97b2e76 410 Gene3D G3DSA:3.80.10.10 24 195 5.9E-15 T 14-10-2018 IPR032675 Leucine-rich repeat domain superfamily YP_2634 8d1c73c9e7f31f4a720535d4b97b2e76 410 SUPERFAMILY SSF52058 63 181 5.78E-9 T 14-10-2018 YP_0635 60098bfea136e6d1f25b802dba9e389f 349 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 128 349 3.0E-42 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YP_0635 60098bfea136e6d1f25b802dba9e389f 349 SUPERFAMILY SSF161098 106 337 1.02E-20 T 14-10-2018 IPR035906 MetI-like superfamily YP_2603 16333c409146b5f118ada666a7c48cea 175 Pfam PF05232 Chlorhexidine efflux transporter 23 85 7.0E-24 T 14-10-2018 IPR007896 Chlorhexidine efflux transporter YP_2603 16333c409146b5f118ada666a7c48cea 175 Pfam PF05232 Chlorhexidine efflux transporter 91 153 6.3E-24 T 14-10-2018 IPR007896 Chlorhexidine efflux transporter YP_0897 b280376cd13dd29660634f55a98231d7 99 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 9 88 1.6E-15 T 14-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative YP_0627 60f4ccaef790df74807f44f49d430e34 158 TIGRFAM TIGR03293 PhnG_redo: phosphonate C-P lyase system protein PhnG 6 157 6.1E-54 T 14-10-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YP_0627 60f4ccaef790df74807f44f49d430e34 158 Pfam PF06754 Phosphonate metabolism protein PhnG 7 156 1.5E-51 T 14-10-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YP_3049 a24468568e084b552e0b282a30897907 425 Pfam PF07196 Flagellin hook IN motif 124 174 3.6E-5 T 14-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 YP_3049 a24468568e084b552e0b282a30897907 425 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 21 99 1.2E-12 T 14-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 YP_3049 a24468568e084b552e0b282a30897907 425 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 206 413 3.3E-23 T 14-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 YP_0549 86628b9bb7eb05988500d41284089bde 151 Pfam PF12582 Protein of unknown function (DUF3757) 20 142 3.3E-35 T 14-10-2018 IPR022231 Protein of unknown function DUF3757 YP_1134 ec3fb978818ce036a4ff329ee1dd94f4 309 Gene3D G3DSA:3.40.50.2300 34 282 1.8E-73 T 14-10-2018 YP_1134 ec3fb978818ce036a4ff329ee1dd94f4 309 SUPERFAMILY SSF53822 22 300 5.65E-71 T 14-10-2018 IPR028082 Periplasmic binding protein-like I YP_1134 ec3fb978818ce036a4ff329ee1dd94f4 309 Gene3D G3DSA:3.40.50.2300 122 262 1.8E-73 T 14-10-2018 YP_1134 ec3fb978818ce036a4ff329ee1dd94f4 309 Pfam PF13407 Periplasmic binding protein domain 24 277 1.1E-54 T 14-10-2018 IPR025997 Periplasmic binding protein YP_3938 28879fa6dd41ca9f221fa127bb65801d 74 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 19 70 4.7E-22 T 14-10-2018 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 YP_pMT103 5481301ffd39184ea51fb2a9194b6d8b 163 Pfam PF07128 Protein of unknown function (DUF1380) 25 161 2.7E-72 T 14-10-2018 IPR009811 Protein of unknown function DUF1380 YP_1509 40089f009c491763e1646387a9efa849 96 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 12 90 1.9E-24 T 14-10-2018 IPR025528 BrnA antitoxin of type II toxin-antitoxin system YP_3939 fb172ee63fa8f9f56e46c8b02d18c03d 63 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 10 55 3.5E-18 T 14-10-2018 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 YP_1172 d84081d1d0117dd03a613333f1073bf0 559 Pfam PF02470 MlaD protein 171 229 4.1E-8 T 14-10-2018 IPR003399 Mce/MlaD YP_1172 d84081d1d0117dd03a613333f1073bf0 559 Pfam PF02470 MlaD protein 301 402 8.3E-13 T 14-10-2018 IPR003399 Mce/MlaD YP_1172 d84081d1d0117dd03a613333f1073bf0 559 Pfam PF02470 MlaD protein 54 145 4.5E-11 T 14-10-2018 IPR003399 Mce/MlaD YP_0091 60f9d9f2530d3edf1d0f89b210fb5d2c 166 Pfam PF05656 Protein of unknown function (DUF805) 29 154 1.2E-21 T 14-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 YP_0419 53a90de0a8cd713627e7992fe72eec5e 186 TIGRFAM TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family 2 166 3.7E-37 T 14-10-2018 IPR012842 Type III secretion system HrpE/YscL YP_3713 77eb3301636dca58b7e26ee52ecd57c2 196 Pfam PF01184 GPR1/FUN34/yaaH family 4 183 1.1E-43 T 14-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 YP_3669 aed4c330a494f4b0ccb7e9c866d9aae4 205 Pfam PF12059 Protein of unknown function (DUF3540) 133 205 9.7E-13 T 14-10-2018 IPR021927 Protein of unknown function DUF3540 YP_3669 aed4c330a494f4b0ccb7e9c866d9aae4 205 Pfam PF12059 Protein of unknown function (DUF3540) 55 127 2.2E-10 T 14-10-2018 IPR021927 Protein of unknown function DUF3540 YP_3067 0c8564e0c1083e701cf3c77db7618e79 493 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 67 490 4.9E-175 T 14-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YP_3067 0c8564e0c1083e701cf3c77db7618e79 493 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 20 491 3.7E-210 T 14-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YP_3153 97869ff059a0c803867a6ad8611ade31 160 Pfam PF06092 Enterobacterial putative membrane protein (DUF943) 9 158 2.8E-63 T 14-10-2018 IPR010351 Protein of unknown function DUF943 YP_3203 c4e330644aeedcabc03a027930ffe023 234 Gene3D G3DSA:3.30.450.40 49 232 2.8E-34 T 14-10-2018 IPR029016 GAF-like domain superfamily YP_3203 c4e330644aeedcabc03a027930ffe023 234 Pfam PF04340 Protein of unknown function, DUF484 13 231 1.9E-72 T 14-10-2018 IPR007435 Protein of unknown function DUF484 YP_1513 942c349b01f2775396fc12967fb5ef32 95 Gene3D G3DSA:2.60.40.3940 10 93 2.0E-6 T 14-10-2018 YP_2606 aa26d36661d9d39ce36c8334243a79c0 122 Pfam PF10697 Protein of unknown function (DUF2502) 24 111 5.1E-36 T 14-10-2018 IPR019638 Protein of unknown function DUF2502 YP_3221 ac80936da7890220479422b1801d0a83 372 SUPERFAMILY SSF51695 41 365 7.85E-91 T 14-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YP_3221 ac80936da7890220479422b1801d0a83 372 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 45 359 4.4E-71 T 14-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 YP_3221 ac80936da7890220479422b1801d0a83 372 Gene3D G3DSA:3.20.20.190 39 366 5.7E-132 T 14-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YP_pCD97 dc374436bfe099ae644e9921a427e985 163 SUPERFAMILY SSF52540 58 151 1.01E-6 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YP_2225 e18ac6f85173ca1f415cb8f2c532f701 227 Pfam PF01914 MarC family integral membrane protein 9 218 2.2E-62 T 14-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 YP_2225 e18ac6f85173ca1f415cb8f2c532f701 227 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 15 215 6.0E-37 T 14-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 YP_pCRY17 8b223038cebd84df5f97f7e7a0a24ddb 132 Pfam PF13117 Cag pathogenicity island protein Cag12 10 115 5.4E-40 T 14-10-2018 IPR025264 Cag pathogenicity island protein Cag12 YP_pCRY08 53ded6eed1768c980fa640a3ad5a913e 101 Pfam PF04956 TrbC/VIRB2 family 6 98 9.1E-19 T 14-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 YP_0891 230a61bdb769fe904b159db9c93b5587 378 Pfam PF04865 Baseplate J-like protein 66 340 1.2E-84 T 14-10-2018 IPR006949 Baseplate protein J-like YP_2954 8d686ea67c8e05ec04518f9278cec1c8 153 SUPERFAMILY SSF160631 50 144 4.51E-5 T 14-10-2018 YP_2690 d7e5a1d2e190f9ce49c933473ed3d50a 354 Pfam PF01594 AI-2E family transporter 19 345 1.4E-81 T 14-10-2018 IPR002549 Transmembrane protein TqsA-like YP_3911 d4d6100715562fe8f367bc4d9e45731b 317 Pfam PF02653 Branched-chain amino acid transport system / permease component 44 309 2.8E-36 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_1800 7a20a5fc4d15d4f810d2734c46ce38db 328 Gene3D G3DSA:3.20.20.150 1 240 8.2E-39 T 14-10-2018 YP_1800 7a20a5fc4d15d4f810d2734c46ce38db 328 Pfam PF01261 Xylose isomerase-like TIM barrel 26 218 7.3E-18 T 14-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain YP_1800 7a20a5fc4d15d4f810d2734c46ce38db 328 SUPERFAMILY SSF51658 18 231 1.66E-29 T 14-10-2018 IPR036237 Xylose isomerase-like superfamily YP_2567 2c83255975abda464dd4e86eb85f8eb5 317 Pfam PF07179 SseB protein N-terminal domain 48 176 3.6E-29 T 14-10-2018 IPR009839 SseB protein N-terminal domain YP_2567 2c83255975abda464dd4e86eb85f8eb5 317 Pfam PF14581 SseB protein C-terminal domain 192 302 1.1E-34 T 14-10-2018 IPR027945 SseB protein, C-terminal YP_0411 f25a275f963be8fb9b200d8eef822f7e 409 Pfam PF16693 Inner membrane component of T3SS, periplasmic domain 175 402 1.0E-16 T 14-10-2018 IPR032034 Yop protein translocation protein D, periplasmic domain YP_0411 f25a275f963be8fb9b200d8eef822f7e 409 TIGRFAM TIGR02500 type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family 10 407 3.2E-120 T 14-10-2018 IPR012843 Type III secretion system YscD/HrpQ YP_1891 b1460073910cc96f7b2337ef6f8ad9f4 270 Gene3D G3DSA:3.20.20.380 17 269 3.0E-87 T 14-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 YP_1891 b1460073910cc96f7b2337ef6f8ad9f4 270 Pfam PF03932 CutC family 19 217 2.7E-73 T 14-10-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 YP_1891 b1460073910cc96f7b2337ef6f8ad9f4 270 SUPERFAMILY SSF110395 19 260 2.48E-75 T 14-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 YP_1891 b1460073910cc96f7b2337ef6f8ad9f4 270 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 18 220 28.069 T 14-10-2018 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 YP_3676 bcab395e1dd4e9cd70c4ba8ee20d2b52 147 Pfam PF04965 Gene 25-like lysozyme 25 121 1.9E-12 T 14-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD YP_3326 94c95df70ff360754f356b9434e8792c 330 Pfam PF02653 Branched-chain amino acid transport system / permease component 53 318 6.7E-44 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_pMT003 950dddb52d70ca716c3ec39a45b1c23f 202 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 72 189 3.8E-41 T 14-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YP_2599 f82c8f1e9f0b3292128fe1ef0a3889a8 199 SUPERFAMILY SSF81342 24 199 6.51E-29 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 YP_2599 f82c8f1e9f0b3292128fe1ef0a3889a8 199 Pfam PF01292 Prokaryotic cytochrome b561 29 198 8.8E-22 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 YP_2375 3cceeccd8c6e7fe998c062118c6e9e68 151 Hamap MF_01101 UPF0208 membrane protein YfbV [yfbV]. 9 151 35.697 T 14-10-2018 IPR007334 Uncharacterised protein family UPF0208 YP_2375 3cceeccd8c6e7fe998c062118c6e9e68 151 Pfam PF04217 Protein of unknown function, DUF412 11 149 4.8E-58 T 14-10-2018 IPR007334 Uncharacterised protein family UPF0208 YP_pMT028 773224a5ee6ebfdc56bace15981f2d72 299 SUPERFAMILY SSF55729 4 165 8.73E-10 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase YP_2382 f425fd94cf203258b116f2402cfef20a 418 Pfam PF03611 PTS system sugar-specific permease component 11 405 2.0E-147 T 14-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 YP_1132 4e3c38fba62c39dd5f3abff8a16e2836 342 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 329 1.1E-50 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_1140 995b0798d0c42f0c06adde92ccc00900 184 Pfam PF07274 Protein of unknown function (DUF1440) 22 165 2.6E-43 T 14-10-2018 IPR009898 Protein of unknown function DUF1440 YP_2496 d24ede8b2406a91617a82bf6f0e3b513 94 Pfam PF10725 Protein of unknown function (DUF2517) 30 89 8.4E-35 T 14-10-2018 IPR019663 Uncharacterised protein YbfA YP_3869 1954394027e36d1fef97c856ff808da5 122 Pfam PF10828 Protein of unknown function (DUF2570) 18 112 2.4E-6 T 14-10-2018 IPR022538 Protein of unknown function DUF2570 YP_2440 b2fcd233094037d21a7538a09882c69c 86 Pfam PF05488 PAAR motif 8 76 7.8E-12 T 14-10-2018 IPR008727 PAAR motif YP_2440 b2fcd233094037d21a7538a09882c69c 86 Gene3D G3DSA:2.60.200.60 2 85 2.7E-14 T 14-10-2018 YP_pMT127 f5176be5013d2b2ff76e19e5f3e41b72 240 Pfam PF13643 Domain of unknown function (DUF4145) 124 198 5.1E-6 T 14-10-2018 IPR025285 Domain of unknown function DUF4145 YP_2025 adaa0a2159deba84730598d72ceca993 100 Gene3D G3DSA:1.10.1220.10 1 48 7.4E-7 T 14-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 YP_2025 adaa0a2159deba84730598d72ceca993 100 SUPERFAMILY SSF47598 2 45 4.08E-8 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 YP_3229 89ac6633759986a9c5b769701740ec8e 208 Pfam PF07947 YhhN family 26 206 4.2E-44 T 14-10-2018 IPR012506 YhhN-like GO:0016021 YP_2656 f3e20469bb3c9a9ab266aca5deed9ecb 152 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 32.028 T 14-10-2018 IPR003791 Protein of unknown function UPF0178 YP_2656 f3e20469bb3c9a9ab266aca5deed9ecb 152 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 18 145 3.7E-51 T 14-10-2018 IPR003791 Protein of unknown function UPF0178 YP_3962 67c21636cbed706e049e00c8176912bf 195 Pfam PF13988 Protein of unknown function (DUF4225) 1 163 1.4E-61 T 14-10-2018 IPR025320 Protein of unknown function DUF4225 YP_1857 e264ca8778002c6228cc11e4a535fd81 133 SUPERFAMILY SSF48295 4 56 5.75E-13 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 YP_3456 299fa75be9dcaa0bc702874c11944895 216 Pfam PF02517 CAAX protease self-immunity 114 206 6.7E-19 T 14-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 YP_2662 445a1a00ba3cf068d2bdafe76c0e22f0 90 Gene3D G3DSA:3.30.70.920 8 78 9.5E-26 T 14-10-2018 YP_2662 445a1a00ba3cf068d2bdafe76c0e22f0 90 Hamap MF_02200 Chaperone NapD [napD]. 8 85 17.751 T 14-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly YP_2662 445a1a00ba3cf068d2bdafe76c0e22f0 90 Pfam PF03927 NapD protein 8 83 2.9E-25 T 14-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly YP_0462 ec90585bba185c8834f07b2781832c15 466 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 113 133 - T 14-10-2018 IPR013087 Zinc finger C2H2-type GO:0003676 YP_1271 f05ad9cc0c047e408f30dd517c757f5d 440 TIGRFAM TIGR00814 stp: serine transporter 27 426 1.4E-178 T 14-10-2018 IPR004694 Hydroxy amino acid transporter GO:0006865|GO:0015171|GO:0016021 YP_1271 f05ad9cc0c047e408f30dd517c757f5d 440 Pfam PF03222 Tryptophan/tyrosine permease family 39 363 5.4E-10 T 14-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 YP_1290 4fa51cbe94ea57af9085ec1a8cdde644 166 ProDom PD022058 PSAF MYFF 5 166 1.0E-89 T 14-10-2018 IPR035182 Protein of unknown function PsaF YP_1290 4fa51cbe94ea57af9085ec1a8cdde644 166 Pfam PF17550 Family of unknown function 5 166 2.5E-113 T 14-10-2018 IPR035182 Protein of unknown function PsaF YP_pCD08 dc8fd93903439b5b01e1646077ec5820 288 TIGRFAM TIGR03474 incFII_RepA: incFII family plasmid replication initiator RepA 12 286 4.6E-182 T 14-10-2018 IPR017837 Plasmid replication initiator, RepA, IncFII type YP_pCD08 dc8fd93903439b5b01e1646077ec5820 288 Pfam PF02387 IncFII RepA protein family 14 247 8.6E-30 T 14-10-2018 IPR003446 Plasmid replication initiation, RepA GO:0006276 YP_2879 65a45e1b8a4158650227a9878b8fda64 156 Pfam PF10713 Protein of unknown function (DUF2509) 18 154 2.4E-43 T 14-10-2018 IPR019652 Protein of unknown function DUF2509 YP_2610 b14a48a96d17520aa926e2c6015495ad 203 Pfam PF06042 Nucleotidyltransferase 25 201 2.5E-66 T 14-10-2018 IPR009267 Putative nucleotidyltransferase YP_1366 c678a0d6d03708c1ac423fab450c7c3f 86 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 1 56 3.5E-17 T 14-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal YP_3956 03f474e43c597ca2cefc154264624b2e 365 Pfam PF06996 Type VI secretion, TssG 41 351 9.5E-92 T 14-10-2018 IPR010732 Type VI secretion, TssG-like YP_3956 03f474e43c597ca2cefc154264624b2e 365 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 41 351 3.7E-99 T 14-10-2018 IPR010732 Type VI secretion, TssG-like YP_1104 150956a1e3a738c7b064580ec4fba705 207 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 5 164 27.726 T 14-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 YP_1104 150956a1e3a738c7b064580ec4fba705 207 Pfam PF04390 Lipopolysaccharide-assembly 45 159 3.2E-13 T 14-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 YP_1104 150956a1e3a738c7b064580ec4fba705 207 Gene3D G3DSA:3.30.160.150 16 164 6.9E-62 T 14-10-2018 YP_pCD68 8d573edd92d6d1e9d1f17777cba6f674 187 PIRSF PIRSF007043 6 187 2.0E-128 T 14-10-2018 IPR016505 Type III secretion system YopQ YP_pCD18 04146acd83e2875315287db6647e2aef 102 SUPERFAMILY SSF53098 4 90 6.98E-14 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily YP_pCD18 04146acd83e2875315287db6647e2aef 102 Pfam PF13683 Integrase core domain 48 85 1.9E-13 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YP_1576 7278e2de0ebb191db8bb38d7f82a67cd 139 Gene3D G3DSA:3.30.160.250 2 88 3.4E-11 T 14-10-2018 YP_1576 7278e2de0ebb191db8bb38d7f82a67cd 139 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 4 131 4.3E-35 T 14-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system YP_1576 7278e2de0ebb191db8bb38d7f82a67cd 139 SUPERFAMILY SSF143100 2 67 4.71E-10 T 14-10-2018 IPR035069 TTHA1013/TTHA0281-like YP_pMT057 2cee22f4832d136b806a4c18d6d1e2b8 354 Pfam PF01051 Initiator Replication protein 27 285 4.1E-37 T 14-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 YP_1019 79e6fc2569b65c3f3fdf817041b3441b 272 Pfam PF02517 CAAX protease self-immunity 172 259 1.2E-19 T 14-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 YP_1604 d10e148b86965c4c69cd2422054acef7 108 Pfam PF07377 Protein of unknown function (DUF1493) 1 108 9.4E-44 T 14-10-2018 IPR010862 Protein of unknown function DUF1493 YP_2195 8dc976b39fef042ac3ee77f430f741f6 382 Pfam PF01594 AI-2E family transporter 32 361 9.8E-50 T 14-10-2018 IPR002549 Transmembrane protein TqsA-like YP_3242 28a21f8131b1ee37012722f45a602b81 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 292 1.3E-63 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_2730 4e8e8bbad922290b03d46c4f2d29c375 97 Pfam PF06836 Protein of unknown function (DUF1240) 3 97 7.3E-39 T 14-10-2018 IPR010665 Protein of unknown function DUF1240 YP_3596 c7b66969af519c8e07b6df74a4b8c4bd 176 Pfam PF09933 Predicted small integral membrane protein (DUF2165) 14 170 1.4E-67 T 14-10-2018 IPR018681 Protein of unknown function DUF2165, transmembrane YP_3252 1a05106df1639004c4d64b37d790e891 206 Pfam PF04449 CS1 type fimbrial major subunit 68 203 1.3E-36 T 14-10-2018 IPR007540 Fimbrial major subunit, CS1-type GO:0009289 YP_3252 1a05106df1639004c4d64b37d790e891 206 Gene3D G3DSA:2.60.40.2040 80 206 1.9E-7 T 14-10-2018 YP_2938 8e0924970c517dfd4b579ff182147b3a 111 Pfam PF17090 Uncharacterised protein family 46 109 5.2E-11 T 14-10-2018 IPR031381 Uncharacterised protein YtcA YP_3499 e099cd2e749ba16f95428ce1942bfbdd 184 Pfam PF02325 YGGT family 10 76 8.1E-21 T 14-10-2018 IPR003425 CCB3/YggT GO:0016020 YP_3499 e099cd2e749ba16f95428ce1942bfbdd 184 Pfam PF02325 YGGT family 108 171 5.8E-18 T 14-10-2018 IPR003425 CCB3/YggT GO:0016020 YP_pCD06 146d2f97e503a84d48bf361fbd14f46a 84 Pfam PF10723 Replication regulatory protein RepB 1 80 3.8E-44 T 14-10-2018 IPR019661 Replication regulatory protein RepA2 GO:0006276 YP_2834 4022be5deff6efccc5c52c4088b43e3c 316 Pfam PF16946 OMPG-porin 1 family 131 316 3.7E-9 T 14-10-2018 IPR031605 Putative OMPG-porin 1 family YP_0405 8f293858e06a2914bfd0dd76561ef50d 103 Pfam PF04341 Protein of unknown function, DUF485 11 98 4.9E-34 T 14-10-2018 IPR007436 Protein of unknown function DUF485 YP_3001 b219e35ca767a44bf1f488b340eb1e43 157 Pfam PF07811 TadE-like protein 15 56 6.4E-9 T 14-10-2018 IPR012495 TadE-like YP_2821 566b90b6aee3100a6b1cbc9ca4d27735 139 Pfam PF04241 Protein of unknown function (DUF423) 28 114 4.4E-23 T 14-10-2018 IPR006696 Protein of unknown function DUF423 YP_4019 57a1c11d3b798748d2e5787564dac035 223 Pfam PF04519 Polymer-forming cytoskeletal 87 183 1.5E-17 T 14-10-2018 IPR007607 Bactofilin A/B YP_2403 6c73359c526560ca9f376b022da7bf19 345 PIRSF PIRSF020588 1 344 3.0E-154 T 14-10-2018 IPR023597 Flagellar regulator Flk GO:0010468|GO:0031224 YP_3060 ed6ab4a9b1df816f550219a42833df8e 123 Pfam PF05656 Protein of unknown function (DUF805) 19 121 9.6E-15 T 14-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 YP_2995 c20acde2eb5dbe0365a3e3ef318bf705 220 Pfam PF09335 SNARE associated Golgi protein 48 172 1.7E-17 T 14-10-2018 IPR032816 SNARE associated Golgi protein YP_3195 fbe63d9c61e42d99884079f5d7431998 377 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 35 365 3.0E-144 T 14-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX YP_2397 8cf783548f0e6631195270410c351170 220 Pfam PF09335 SNARE associated Golgi protein 49 177 6.2E-27 T 14-10-2018 IPR032816 SNARE associated Golgi protein YP_3393 14b6a8f952b49a6ce6f0dfd6e899cb4a 81 Pfam PF04606 Ogr/Delta-like zinc finger 3 49 1.9E-19 T 14-10-2018 IPR007684 Zinc finger, Ogr/Delta-type YP_1842 d9cf048577e9e9a84617e95e6190c2ec 310 SUPERFAMILY SSF51182 40 209 2.71E-5 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily YP_1442 7cbc3d046d43f34a6f88988ea12a8601 331 Pfam PF02653 Branched-chain amino acid transport system / permease component 49 322 9.9E-38 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_1480 828d02213c49c16c0c8bd65bdcbe362d 77 Pfam PF13996 YobH-like protein 3 70 8.0E-35 T 14-10-2018 IPR025611 YobH-like protein YP_1296 6808b89457839909fc3ca39d30a96e1e 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 320 1.6E-37 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YP_2114 a1a275420dce4ed352e72e519fe60ca9 898 Pfam PF11739 Dicarboxylate transport 661 862 8.8E-66 T 14-10-2018 IPR021730 Dicarboxylate transport YP_2598 de8d18fa1ce8119d313c172af6f9cd41 146 Pfam PF15970 HicB_like antitoxin of bacterial toxin-antitoxin system 6 86 2.4E-46 T 14-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system YP_0892 2dccdb4d893c145932fd3180b7abacde 151 Pfam PF07409 Phage protein GP46 30 136 2.9E-41 T 14-10-2018 IPR010877 Bacteriophage Mu, Gp46 YP_3785 7d5803451301c8a96047d0dac3819b5b 462 Pfam PF13558 Putative exonuclease SbcCD, C subunit 318 406 1.8E-16 T 14-10-2018