locus-tag class description CH60_100 PF01226 Formate/nitrite transporter CH60_1003 PF01494 FAD binding domain CH60_1004 PF00919 Uncharacterized protein family UPF0004 CH60_1004 PF04055 Radical SAM superfamily CH60_1004 PF01938 TRAM domain CH60_1005 PF02562 PhoH-like protein CH60_1006 PF02130 Uncharacterized protein family UPF0054 CH60_1007 PF00571 CBS domain CH60_1007 PF03471 Transporter associated domain CH60_1008 PF00795 Carbon-nitrogen hydrolase CH60_1009 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH60_101 PF13806 Rieske-like [2Fe-2S] domain CH60_1010 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1011 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1012 PF00005 ABC transporter CH60_1013 PF07295 Zinc-ribbon containing domain CH60_1014 PF00133 tRNA synthetases class I (I, L, M and V) CH60_1014 PF08264 Anticodon-binding domain of tRNA CH60_1014 PF13603 Leucyl-tRNA synthetase, Domain 2 CH60_1015 PF04390 Lipopolysaccharide-assembly CH60_1016 PF06144 DNA polymerase III, delta subunit CH60_1016 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH60_1017 PF01467 Cytidylyltransferase-like CH60_1019 PF02590 Predicted SPOUT methyltransferase CH60_102 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH60_102 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH60_102 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH60_102 PF04324 BFD-like [2Fe-2S] binding domain CH60_102 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH60_1020 PF00905 Penicillin binding protein transpeptidase domain CH60_1020 PF03717 Penicillin-binding Protein dimerisation domain CH60_1021 PF01098 Cell cycle protein CH60_1022 PF05036 Sporulation related domain CH60_1022 PF03330 Lytic transglycolase CH60_1023 PF07943 Penicillin-binding protein 5, C-terminal domain CH60_1023 PF00768 D-alanyl-D-alanine carboxypeptidase CH60_1024 PF04359 Protein of unknown function (DUF493) CH60_1025 PF03099 Biotin/lipoate A/B protein ligase family CH60_1026 PF04055 Radical SAM superfamily CH60_1026 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CH60_1027 PF02416 mttA/Hcf106 family CH60_1028 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH60_1029 PF00313 'Cold-shock' DNA-binding domain CH60_103 PF07969 Amidohydrolase family CH60_1030 PF00313 'Cold-shock' DNA-binding domain CH60_1031 PF00196 Bacterial regulatory proteins, luxR family CH60_1036 PF00005 ABC transporter CH60_1036 PF00664 ABC transporter transmembrane region CH60_1038 PF04962 KduI/IolB family CH60_1039 PF01261 Xylose isomerase-like TIM barrel CH60_104 PF07690 Major Facilitator Superfamily CH60_1040 PF00294 pfkB family carbohydrate kinase CH60_1041 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH60_1041 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH60_1042 PF02653 Branched-chain amino acid transport system / permease component CH60_1043 PF00005 ABC transporter CH60_1044 PF13407 Periplasmic binding protein domain CH60_1045 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH60_1045 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH60_1046 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH60_1046 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH60_1047 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH60_1047 PF00205 Thiamine pyrophosphate enzyme, central domain CH60_1047 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH60_1048 PF00171 Aldehyde dehydrogenase family CH60_1053 PF17962 Bacterial macroglobulin domain 6 CH60_1053 PF01835 MG2 domain CH60_1053 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CH60_1053 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CH60_1053 PF00207 Alpha-2-macroglobulin family CH60_1053 PF07703 Alpha-2-macroglobulin bait region domain CH60_1053 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CH60_1054 PF00912 Transglycosylase CH60_1054 PF00905 Penicillin binding protein transpeptidase domain CH60_1054 PF06832 Penicillin-Binding Protein C-terminus Family CH60_1055 PF13693 Winged helix-turn-helix DNA-binding CH60_106 PF00356 Bacterial regulatory proteins, lacI family CH60_1060 PF05638 Type VI secretion system effector, Hcp CH60_1063 PF03797 Autotransporter beta-domain CH60_1063 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH60_1063 PF03212 Pertactin CH60_1063 PF13018 Extended Signal Peptide of Type V secretion system CH60_1065 PF08007 Cupin superfamily protein CH60_1066 PF00872 Transposase, Mutator family CH60_1067 PF00872 Transposase, Mutator family CH60_107 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH60_107 PF02056 Family 4 glycosyl hydrolase CH60_1072 PF00248 Aldo/keto reductase family CH60_1073 PF00248 Aldo/keto reductase family CH60_1074 PF03466 LysR substrate binding domain CH60_1074 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_1075 PF02796 Helix-turn-helix domain of resolvase CH60_1075 PF00665 Integrase core domain CH60_1076 PF01695 IstB-like ATP binding protein CH60_1077 PF02801 Beta-ketoacyl synthase, C-terminal domain CH60_1077 PF00109 Beta-ketoacyl synthase, N-terminal domain CH60_1078 PF01797 Transposase IS200 like CH60_1079 PF03886 ABC-type transport auxiliary lipoprotein component CH60_108 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH60_1080 PF02470 MlaD protein CH60_1081 PF04403 Paraquat-inducible protein A CH60_1082 PF16326 ABC transporter C-terminal domain CH60_1082 PF00005 ABC transporter CH60_1082 PF12848 ABC transporter CH60_1083 PF10672 S-adenosylmethionine-dependent methyltransferase CH60_1083 PF02926 THUMP domain CH60_1083 PF01170 Putative RNA methylase family UPF0020 CH60_1084 PF03473 MOSC domain CH60_1084 PF03476 MOSC N-terminal beta barrel domain CH60_1084 PF00111 2Fe-2S iron-sulfur cluster binding domain CH60_1085 PF07126 Cell-division protein ZapC CH60_1086 PF01180 Dihydroorotate dehydrogenase CH60_1087 PF01433 Peptidase family M1 domain CH60_1087 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH60_1087 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH60_1088 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH60_1088 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH60_1089 PF01336 OB-fold nucleic acid binding domain CH60_1089 PF00152 tRNA synthetases class II (D, K and N) CH60_109 PF05872 Bacterial protein of unknown function (DUF853) CH60_1090 PF00267 Gram-negative porin CH60_1091 PF00155 Aminotransferase class I and II CH60_1092 PF00753 Metallo-beta-lactamase superfamily CH60_1093 PF05951 Bacterial protein of unknown function (DUF882) CH60_1094 PF01471 Putative peptidoglycan binding domain CH60_1094 PF03734 L,D-transpeptidase catalytic domain CH60_1095 PF01797 Transposase IS200 like CH60_1096 PF16330 MukB hinge domain CH60_1096 PF04310 MukB N-terminal CH60_1097 PF04288 MukE-like family CH60_1098 PF03882 MukF winged-helix domain CH60_1098 PF17193 MukF C-terminal domain CH60_1098 PF17192 MukF middle domain CH60_11 PF01384 Phosphate transporter family CH60_110 PF00117 Glutamine amidotransferase class-I CH60_1100 PF01636 Phosphotransferase enzyme family CH60_1101 PF02348 Cytidylyltransferase CH60_1102 PF03966 Trm112p-like protein CH60_1103 PF00313 'Cold-shock' DNA-binding domain CH60_1104 PF07063 Domain of unknown function (DUF1338) CH60_1105 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH60_1106 PF00005 ABC transporter CH60_1106 PF00664 ABC transporter transmembrane region CH60_1107 PF03772 Competence protein CH60_1107 PF00753 Metallo-beta-lactamase superfamily CH60_1108 PF00216 Bacterial DNA-binding protein CH60_111 PF00202 Aminotransferase class-III CH60_1110 PF00575 S1 RNA binding domain CH60_1111 PF02224 Cytidylate kinase CH60_1112 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH60_1113 PF00266 Aminotransferase class-V CH60_1115 PF05662 Coiled stalk of trimeric autotransporter adhesin CH60_1115 PF13018 Extended Signal Peptide of Type V secretion system CH60_1115 PF03895 YadA-like membrane anchor domain CH60_1115 PF13018 Extended Signal Peptide of Type V secretion system CH60_1115 PF05662 Coiled stalk of trimeric autotransporter adhesin CH60_1115 PF05658 Head domain of trimeric autotransporter adhesin CH60_1115 PF03895 YadA-like membrane anchor domain CH60_1115 PF05658 Head domain of trimeric autotransporter adhesin CH60_1116 PF00710 Asparaginase, N-terminal CH60_1116 PF17763 Glutaminase/Asparaginase C-terminal domain CH60_1117 PF18381 YcaO cyclodehydratase C-terminal domain CH60_1117 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH60_1118 PF01226 Formate/nitrite transporter CH60_1119 PF01228 Glycine radical CH60_1119 PF02901 Pyruvate formate lyase-like CH60_112 PF12805 FUSC-like inner membrane protein yccS CH60_1121 PF04055 Radical SAM superfamily CH60_1122 PF07690 Major Facilitator Superfamily CH60_1123 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH60_1123 PF02403 Seryl-tRNA synthetase N-terminal domain CH60_1124 PF12002 MgsA AAA+ ATPase C terminal CH60_1124 PF16193 AAA C-terminal domain CH60_1124 PF00004 ATPase family associated with various cellular activities (AAA) CH60_1126 PF03548 Outer membrane lipoprotein carrier protein LolA CH60_1127 PF09397 Ftsk gamma domain CH60_1127 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH60_1127 PF17854 FtsK alpha domain CH60_1127 PF01580 FtsK/SpoIIIE family CH60_1128 PF01037 Lrp/AsnC ligand binding domain CH60_1129 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH60_113 PF00027 Cyclic nucleotide-binding domain CH60_113 PF13545 Crp-like helix-turn-helix domain CH60_1130 PF00005 ABC transporter CH60_1130 PF00664 ABC transporter transmembrane region CH60_1131 PF00005 ABC transporter CH60_1131 PF00664 ABC transporter transmembrane region CH60_1132 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH60_1133 PF01176 Translation initiation factor 1A / IF-1 CH60_1134 PF01797 Transposase IS200 like CH60_1135 PF17871 AAA lid domain CH60_1135 PF07724 AAA domain (Cdc48 subfamily) CH60_1135 PF00004 ATPase family associated with various cellular activities (AAA) CH60_1135 PF10431 C-terminal, D2-small domain, of ClpB protein CH60_1135 PF02861 Clp amino terminal domain, pathogenicity island component CH60_1136 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH60_1137 PF00313 'Cold-shock' DNA-binding domain CH60_1138 PF02687 FtsX-like permease family CH60_1138 PF12704 MacB-like periplasmic core domain CH60_1138 PF00005 ABC transporter CH60_1139 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH60_114 PF02566 OsmC-like protein CH60_1140 PF04393 Protein of unknown function (DUF535) CH60_1141 PF11398 Protein of unknown function (DUF2813) CH60_1142 PF03956 Lysine exporter LysO CH60_1143 PF03063 Prismane/CO dehydrogenase family CH60_1144 PF00970 Oxidoreductase FAD-binding domain CH60_1144 PF00111 2Fe-2S iron-sulfur cluster binding domain CH60_1144 PF00175 Oxidoreductase NAD-binding domain CH60_1145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH60_1145 PF00205 Thiamine pyrophosphate enzyme, central domain CH60_1145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH60_1146 PF01212 Beta-eliminating lyase CH60_1147 PF11066 Protein of unknown function (DUF2867) CH60_1147 PF13460 NAD(P)H-binding CH60_1148 PF01370 NAD dependent epimerase/dehydratase family CH60_1149 PF12883 Protein of unknown function (DUF3828) CH60_1150 PF01817 Chorismate mutase type II CH60_1151 PF00005 ABC transporter CH60_1152 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH60_1153 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1154 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1155 PF00892 EamA-like transporter family CH60_1156 PF10100 Staphylopine dehydrogenase CH60_1157 PF03059 Nicotianamine synthase protein CH60_1158 PF00005 ABC transporter CH60_1159 PF01032 FecCD transport family CH60_116 PF00485 Phosphoribulokinase / Uridine kinase family CH60_1164 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH60_1165 PF05958 tRNA (Uracil-5-)-methyltransferase CH60_1166 PF10767 Protein of unknown function (DUF2593) CH60_1167 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1168 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1169 PF00005 ABC transporter CH60_1169 PF08402 TOBE domain CH60_117 PF06794 Uncharacterised protein family (UPF0270) CH60_1170 PF13416 Bacterial extracellular solute-binding protein CH60_1171 PF10722 Putative bacterial sensory transduction regulator CH60_1172 PF07214 Protein of unknown function (DUF1418) CH60_1173 PF00462 Glutaredoxin CH60_1174 PF02080 TrkA-C domain CH60_1174 PF06826 Predicted Permease Membrane Region CH60_1176 PF01569 PAP2 superfamily CH60_1177 PF01791 DeoC/LacD family aldolase CH60_1178 PF08220 DeoR-like helix-turn-helix domain CH60_1178 PF00455 DeoR C terminal sensor domain CH60_118 PF00561 alpha/beta hydrolase fold CH60_1180 PF00768 D-alanyl-D-alanine carboxypeptidase CH60_1180 PF07943 Penicillin-binding protein 5, C-terminal domain CH60_1181 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1182 PF00005 ABC transporter CH60_1182 PF09383 NIL domain CH60_1183 PF03180 NLPA lipoprotein CH60_1186 PF13417 Glutathione S-transferase, N-terminal domain CH60_1186 PF00043 Glutathione S-transferase, C-terminal domain CH60_1187 PF07715 TonB-dependent Receptor Plug Domain CH60_1187 PF00593 TonB dependent receptor CH60_1188 PF00005 ABC transporter CH60_1189 PF01032 FecCD transport family CH60_119 PF01810 LysE type translocator CH60_1191 PF00324 Amino acid permease CH60_1193 PF03466 LysR substrate binding domain CH60_1193 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_1194 PF03601 Conserved hypothetical protein 698 CH60_1195 PF01261 Xylose isomerase-like TIM barrel CH60_1196 PF00665 Integrase core domain CH60_1196 PF02796 Helix-turn-helix domain of resolvase CH60_1198 PF01695 IstB-like ATP binding protein CH60_1199 PF09092 Lyase, N terminal CH60_1199 PF02278 Polysaccharide lyase family 8, super-sandwich domain CH60_1199 PF09093 Lyase, catalytic CH60_1199 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain CH60_12 PF01797 Transposase IS200 like CH60_120 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH60_1203 PF00484 Carbonic anhydrase CH60_1206 PF00263 Bacterial type II and III secretion system protein CH60_1206 PF03958 Bacterial type II/III secretion system short domain CH60_1208 PF00482 Type II secretion system (T2SS), protein F CH60_1209 PF08334 Type II secretion system (T2SS), protein G CH60_1209 PF07963 Prokaryotic N-terminal methylation motif CH60_121 PF00005 ABC transporter CH60_1217 PF06750 Bacterial Peptidase A24 N-terminal domain CH60_1217 PF01478 Type IV leader peptidase family CH60_122 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1221 PF02203 Tar ligand binding domain homologue CH60_1221 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH60_1221 PF00672 HAMP domain CH60_1223 PF03466 LysR substrate binding domain CH60_1223 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_1224 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_1224 PF03466 LysR substrate binding domain CH60_1225 PF07690 Major Facilitator Superfamily CH60_1226 PF00356 Bacterial regulatory proteins, lacI family CH60_1227 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH60_1227 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH60_1228 PF00384 Molybdopterin oxidoreductase CH60_1228 PF01568 Molydopterin dinucleotide binding domain CH60_1229 PF13193 AMP-binding enzyme C-terminal domain CH60_1229 PF01553 Acyltransferase CH60_1229 PF00501 AMP-binding enzyme CH60_123 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CH60_1230 PF07690 Major Facilitator Superfamily CH60_1233 PF00248 Aldo/keto reductase family CH60_1234 PF02976 DNA mismatch repair enzyme MutH CH60_1235 PF00293 NUDIX domain CH60_1236 PF00391 PEP-utilising enzyme, mobile domain CH60_1236 PF05524 PEP-utilising enzyme, N-terminal CH60_1236 PF01590 GAF domain CH60_1236 PF02896 PEP-utilising enzyme, TIM barrel domain CH60_1237 PF01790 Prolipoprotein diacylglyceryl transferase CH60_1238 PF00303 Thymidylate synthase CH60_1244 PF17946 RecC C-terminal domain CH60_1245 PF00675 Insulinase (Peptidase family M16) CH60_1245 PF05193 Peptidase M16 inactive domain CH60_1245 PF16187 Middle or third domain of peptidase_M16 CH60_1246 PF12705 PD-(D/E)XK nuclease superfamily CH60_1246 PF13361 UvrD-like helicase C-terminal domain CH60_1246 PF00580 UvrD/REP helicase N-terminal domain CH60_1247 PF13538 UvrD-like helicase C-terminal domain CH60_1248 PF00696 Amino acid kinase family CH60_1248 PF00583 Acetyltransferase (GNAT) family CH60_1249 PF11741 AMIN domain CH60_1249 PF01520 N-acetylmuramoyl-L-alanine amidase CH60_1252 PF03562 MltA specific insert domain CH60_1252 PF06725 3D domain CH60_1253 PF00899 ThiF family CH60_1254 PF02657 Fe-S metabolism associated domain CH60_1255 PF00266 Aminotransferase class-V CH60_1257 PF03466 LysR substrate binding domain CH60_1257 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_1258 PF04241 Protein of unknown function (DUF423) CH60_1259 PF01728 FtsJ-like methyltransferase CH60_1259 PF18125 RlmM ferredoxin-like domain CH60_126 PF00535 Glycosyl transferase family 2 CH60_1260 PF01367 5'-3' exonuclease, C-terminal SAM fold CH60_1260 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH60_1261 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH60_1261 PF11892 Domain of unknown function (DUF3412) CH60_1261 PF03641 Possible lysine decarboxylase CH60_1262 PF14489 QueF-like protein CH60_1262 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH60_1263 PF07348 Syd protein (SUKH-2) CH60_1264 PF01797 Transposase IS200 like CH60_1265 PF04287 tRNA pseudouridine synthase C CH60_1266 PF00849 RNA pseudouridylate synthase CH60_1267 PF00258 Flavodoxin CH60_1268 PF11944 Protein of unknown function (DUF3461) CH60_1269 PF00132 Bacterial transferase hexapeptide (six repeats) CH60_1269 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH60_1269 PF14602 Hexapeptide repeat of succinyl-transferase CH60_127 PF00005 ABC transporter CH60_127 PF12848 ABC transporter CH60_1270 PF08335 GlnD PII-uridylyltransferase CH60_1270 PF01966 HD domain CH60_1270 PF01909 Nucleotidyltransferase domain CH60_1270 PF01842 ACT domain CH60_1271 PF00557 Metallopeptidase family M24 CH60_1272 PF00318 Ribosomal protein S2 CH60_1273 PF00889 Elongation factor TS CH60_1274 PF00696 Amino acid kinase family CH60_1275 PF01765 Ribosome recycling factor CH60_1276 PF13288 DXP reductoisomerase C-terminal domain CH60_1276 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH60_1276 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH60_1277 PF01255 Putative undecaprenyl diphosphate synthase CH60_1279 PF17820 PDZ domain CH60_1279 PF02163 Peptidase family M50 CH60_128 PF02525 Flavodoxin-like fold CH60_1280 PF01103 Surface antigen CH60_1280 PF07244 Surface antigen variable number repeat CH60_1281 PF03938 Outer membrane protein (OmpH-like) CH60_1282 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH60_1282 PF00132 Bacterial transferase hexapeptide (six repeats) CH60_1283 PF07977 FabA-like domain CH60_1284 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH60_1284 PF00132 Bacterial transferase hexapeptide (six repeats) CH60_1285 PF02684 Lipid-A-disaccharide synthetase CH60_1286 PF01351 Ribonuclease HII CH60_1287 PF01336 OB-fold nucleic acid binding domain CH60_1287 PF02811 PHP domain CH60_1287 PF14579 Helix-hairpin-helix motif CH60_1287 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH60_1287 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH60_1288 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH60_1289 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH60_129 PF02254 TrkA-N domain CH60_129 PF00999 Sodium/hydrogen exchanger family CH60_1290 PF09179 TilS substrate binding domain CH60_1290 PF11734 TilS substrate C-terminal domain CH60_1290 PF01171 PP-loop family CH60_1291 PF00034 Cytochrome c CH60_1292 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH60_1293 PF06786 Uncharacterised protein family (UPF0253) CH60_1294 PF07152 YaeQ protein CH60_1295 PF00472 RF-1 domain CH60_1296 PF17185 NlpE C-terminal OB domain CH60_1296 PF04170 NlpE N-terminal domain CH60_1297 PF04073 Aminoacyl-tRNA editing domain CH60_1297 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH60_1297 PF03129 Anticodon binding domain CH60_1298 PF18389 TrmO C-terminal domain CH60_1298 PF01980 tRNA-methyltransferase O CH60_1299 PF16358 RcsF lipoprotein CH60_13 PF10625 Universal stress protein B (UspB) CH60_130 PF09526 Probable metal-binding protein (DUF2387) CH60_1300 PF03180 NLPA lipoprotein CH60_1301 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1302 PF00005 ABC transporter CH60_1302 PF09383 NIL domain CH60_131 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH60_1310 PF00248 Aldo/keto reductase family CH60_1312 PF03372 Endonuclease/Exonuclease/phosphatase family CH60_1313 PF01476 LysM domain CH60_1313 PF01464 Transglycosylase SLT domain CH60_1314 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH60_1314 PF00753 Metallo-beta-lactamase superfamily CH60_1315 PF08241 Methyltransferase domain CH60_1316 PF00075 RNase H CH60_1317 PF00929 Exonuclease CH60_1319 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CH60_132 PF04102 SlyX CH60_1321 PF01695 IstB-like ATP binding protein CH60_1322 PF01695 IstB-like ATP binding protein CH60_1326 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH60_1327 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1328 PF00005 ABC transporter CH60_1328 PF00571 CBS domain CH60_1329 PF00268 Ribonucleotide reductase, small chain CH60_133 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH60_133 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH60_1330 PF02867 Ribonucleotide reductase, barrel domain CH60_1330 PF00317 Ribonucleotide reductase, all-alpha domain CH60_1330 PF08343 Ribonucleotide reductase N-terminal CH60_1331 PF07972 NrdI Flavodoxin like CH60_1333 PF06392 Acid shock protein repeat CH60_1334 PF09400 Protein of unknown function (DUF2002) CH60_1335 PF00872 Transposase, Mutator family CH60_1336 PF00577 Outer membrane usher protein CH60_1336 PF13954 PapC N-terminal domain CH60_1336 PF13953 PapC C-terminal domain CH60_134 PF13309 HTH domain CH60_134 PF08348 YheO-like PAS domain CH60_1344 PF02796 Helix-turn-helix domain of resolvase CH60_1344 PF00665 Integrase core domain CH60_1345 PF01695 IstB-like ATP binding protein CH60_1348 PF04717 Type VI secretion system, phage-baseplate injector CH60_135 PF02635 DsrE/DsrF-like family CH60_1354 PF00872 Transposase, Mutator family CH60_1355 PF00872 Transposase, Mutator family CH60_1358 PF08543 Phosphomethylpyrimidine kinase CH60_136 PF02635 DsrE/DsrF-like family CH60_1361 PF00781 Diacylglycerol kinase catalytic domain CH60_1363 PF07411 Domain of unknown function (DUF1508) CH60_1364 PF00486 Transcriptional regulatory protein, C terminal CH60_1364 PF00072 Response regulator receiver domain CH60_1365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_1365 PF00512 His Kinase A (phospho-acceptor) domain CH60_1365 PF00672 HAMP domain CH60_1366 PF07690 Major Facilitator Superfamily CH60_1367 PF00873 AcrB/AcrD/AcrF family CH60_1368 PF00873 AcrB/AcrD/AcrF family CH60_1369 PF13533 Biotin-lipoyl like CH60_137 PF04077 DsrH like protein CH60_1370 PF08402 TOBE domain CH60_1370 PF00005 ABC transporter CH60_1371 PF00155 Aminotransferase class I and II CH60_1371 PF00392 Bacterial regulatory proteins, gntR family CH60_1372 PF00202 Aminotransferase class-III CH60_1374 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1375 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1376 PF00012 Hsp70 protein CH60_1377 PF03448 MgtE intracellular N domain CH60_1377 PF01769 Divalent cation transporter CH60_1377 PF00571 CBS domain CH60_1378 PF02541 Ppx/GppA phosphatase family CH60_1379 PF13090 Polyphosphate kinase C-terminal domain 2 CH60_1379 PF13089 Polyphosphate kinase N-terminal domain CH60_1379 PF02503 Polyphosphate kinase middle domain CH60_1379 PF17941 Polyphosphate kinase C-terminal domain 1 CH60_138 PF00164 Ribosomal protein S12/S23 CH60_1380 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1381 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1382 PF00005 ABC transporter CH60_1385 PF13302 Acetyltransferase (GNAT) domain CH60_1386 PF00551 Formyl transferase CH60_1387 PF00586 AIR synthase related protein, N-terminal domain CH60_1387 PF02769 AIR synthase related protein, C-terminal domain CH60_1389 PF01797 Transposase IS200 like CH60_139 PF00177 Ribosomal protein S7p/S5e CH60_1390 PF00308 Bacterial dnaA protein CH60_1391 PF03960 ArsC family CH60_1392 PF01435 Peptidase family M48 CH60_1392 PF07720 Tetratricopeptide repeat CH60_1393 PF01594 AI-2E family transporter CH60_1396 PF00578 AhpC/TSA family CH60_1397 PF01842 ACT domain CH60_1398 PF00701 Dihydrodipicolinate synthetase family CH60_1399 PF06804 NlpB/DapX lipoprotein CH60_14 PF00582 Universal stress protein family CH60_140 PF14492 Elongation Factor G, domain II CH60_140 PF00679 Elongation factor G C-terminus CH60_140 PF00009 Elongation factor Tu GTP binding domain CH60_140 PF03764 Elongation factor G, domain IV CH60_140 PF03144 Elongation factor Tu domain 2 CH60_1400 PF01797 Transposase IS200 like CH60_1401 PF01259 SAICAR synthetase CH60_1402 PF04228 Putative neutral zinc metallopeptidase CH60_1403 PF04284 Protein of unknown function (DUF441) CH60_1404 PF13718 GNAT acetyltransferase 2 CH60_1404 PF08351 Domain of unknown function (DUF1726) CH60_1404 PF05127 Helicase CH60_1404 PF17176 tRNA-binding domain CH60_1405 PF13980 Uncharacterised protein family (UPF0370) CH60_1406 PF02557 D-alanyl-D-alanine carboxypeptidase CH60_1407 PF01546 Peptidase family M20/M25/M40 CH60_1407 PF07687 Peptidase dimerisation domain CH60_1408 PF03960 ArsC family CH60_141 PF03144 Elongation factor Tu domain 2 CH60_141 PF03143 Elongation factor Tu C-terminal domain CH60_141 PF00009 Elongation factor Tu GTP binding domain CH60_1411 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1412 PF08402 TOBE domain CH60_1412 PF00005 ABC transporter CH60_1413 PF00884 Sulfatase CH60_1414 PF04055 Radical SAM superfamily CH60_1414 PF13186 Iron-sulfur cluster-binding domain CH60_1415 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH60_1417 PF00873 AcrB/AcrD/AcrF family CH60_1419 PF00072 Response regulator receiver domain CH60_1419 PF00196 Bacterial regulatory proteins, luxR family CH60_142 PF01797 Transposase IS200 like CH60_1420 PF12800 4Fe-4S binding domain CH60_1420 PF13187 4Fe-4S dicluster domain CH60_1420 PF00037 4Fe-4S binding domain CH60_1421 PF03927 NapD protein CH60_1422 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH60_1422 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH60_1422 PF00384 Molybdopterin oxidoreductase CH60_1422 PF01568 Molydopterin dinucleotide binding domain CH60_1423 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH60_1424 PF03264 NapC/NirT cytochrome c family, N-terminal region CH60_1425 PF00293 NUDIX domain CH60_1426 PF00390 Malic enzyme, N-terminal domain CH60_1426 PF01515 Phosphate acetyl/butaryl transferase CH60_1426 PF03949 Malic enzyme, NAD binding domain CH60_1427 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH60_1428 PF01218 Coproporphyrinogen III oxidase CH60_1429 PF00583 Acetyltransferase (GNAT) family CH60_143 PF04324 BFD-like [2Fe-2S] binding domain CH60_1432 PF03212 Pertactin CH60_1432 PF13018 Extended Signal Peptide of Type V secretion system CH60_1432 PF03797 Autotransporter beta-domain CH60_1432 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH60_1433 PF04076 Bacterial OB fold (BOF) protein CH60_1434 PF06572 Protein of unknown function (DUF1131) CH60_1435 PF04261 Dyp-type peroxidase family CH60_1436 PF00701 Dihydrodipicolinate synthetase family CH60_1437 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH60_1438 PF12468 Type III secretion system leucine rich repeat protein CH60_1439 PF00480 ROK family CH60_144 PF00210 Ferritin-like domain CH60_1440 PF04074 YhcH/YjgK/YiaL CH60_1441 PF01418 Helix-turn-helix domain, rpiR family CH60_1441 PF01380 SIS domain CH60_1442 PF07690 Major Facilitator Superfamily CH60_1444 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1445 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1446 PF00005 ABC transporter CH60_1447 PF00291 Pyridoxal-phosphate dependent enzyme CH60_1449 PF00486 Transcriptional regulatory protein, C terminal CH60_1449 PF00072 Response regulator receiver domain CH60_1450 PF00512 His Kinase A (phospho-acceptor) domain CH60_1450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_1450 PF00672 HAMP domain CH60_1452 PF00155 Aminotransferase class I and II CH60_1454 PF05195 Aminopeptidase P, N-terminal domain CH60_1454 PF00557 Metallopeptidase family M24 CH60_1456 PF00474 Sodium:solute symporter family CH60_1457 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH60_1457 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH60_1458 PF12704 MacB-like periplasmic core domain CH60_1458 PF02687 FtsX-like permease family CH60_1458 PF00005 ABC transporter CH60_1459 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH60_146 PF00338 Ribosomal protein S10p/S20e CH60_1460 PF00072 Response regulator receiver domain CH60_1460 PF00486 Transcriptional regulatory protein, C terminal CH60_1461 PF00512 His Kinase A (phospho-acceptor) domain CH60_1461 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_1461 PF00672 HAMP domain CH60_1461 PF16527 Two-component sensor protein CpxA, periplasmic domain CH60_1463 PF01797 Transposase IS200 like CH60_1464 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH60_1465 PF02896 PEP-utilising enzyme, TIM barrel domain CH60_1465 PF00391 PEP-utilising enzyme, mobile domain CH60_1465 PF05524 PEP-utilising enzyme, N-terminal CH60_1466 PF00381 PTS HPr component phosphorylation site CH60_1467 PF00291 Pyridoxal-phosphate dependent enzyme CH60_1469 PF04354 ZipA, C-terminal FtsZ-binding domain CH60_147 PF00297 Ribosomal protein L3 CH60_1470 PF00533 BRCA1 C Terminus (BRCT) domain CH60_1470 PF03120 NAD-dependent DNA ligase OB-fold domain CH60_1470 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH60_1470 PF12826 Helix-hairpin-helix motif CH60_1470 PF01653 NAD-dependent DNA ligase adenylation domain CH60_1471 PF12843 Putative quorum-sensing-regulated virulence factor CH60_1475 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH60_148 PF00573 Ribosomal protein L4/L1 family CH60_1480 PF07670 Nucleoside recognition CH60_1480 PF07662 Na+ dependent nucleoside transporter C-terminus CH60_1480 PF01773 Na+ dependent nucleoside transporter N-terminus CH60_1481 PF01566 Natural resistance-associated macrophage protein CH60_1483 PF00248 Aldo/keto reductase family CH60_1484 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_1484 PF03466 LysR substrate binding domain CH60_1486 PF02685 Glucokinase CH60_1487 PF07350 Protein of unknown function (DUF1479) CH60_1488 PF00155 Aminotransferase class I and II CH60_1489 PF01292 Prokaryotic cytochrome b561 CH60_149 PF00276 Ribosomal protein L23 CH60_1491 PF03783 Curli production assembly/transport component CsgG CH60_1493 PF05643 Putative bacterial lipoprotein (DUF799) CH60_1495 PF02613 Nitrate reductase delta subunit CH60_1496 PF04976 DMSO reductase anchor subunit (DmsC) CH60_1497 PF12800 4Fe-4S binding domain CH60_1497 PF13247 4Fe-4S dicluster domain CH60_1498 PF01568 Molydopterin dinucleotide binding domain CH60_1498 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH60_1498 PF00384 Molybdopterin oxidoreductase CH60_15 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH60_15 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH60_150 PF00181 Ribosomal Proteins L2, RNA binding domain CH60_150 PF03947 Ribosomal Proteins L2, C-terminal domain CH60_1500 PF05638 Type VI secretion system effector, Hcp CH60_1502 PF00005 ABC transporter CH60_1503 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1505 PF13406 Transglycosylase SLT domain CH60_151 PF00203 Ribosomal protein S19 CH60_1515 PF17871 AAA lid domain CH60_1515 PF10431 C-terminal, D2-small domain, of ClpB protein CH60_1515 PF07724 AAA domain (Cdc48 subfamily) CH60_1515 PF00004 ATPase family associated with various cellular activities (AAA) CH60_1516 PF16970 Type-1 fimbrial protein, A CH60_1517 PF02753 Pili assembly chaperone PapD, C-terminal domain CH60_1517 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH60_1518 PF13954 PapC N-terminal domain CH60_1518 PF13953 PapC C-terminal domain CH60_1518 PF00577 Outer membrane usher protein CH60_1519 PF00872 Transposase, Mutator family CH60_152 PF00237 Ribosomal protein L22p/L17e CH60_1520 PF06711 Protein of unknown function (DUF1198) CH60_1522 PF00313 'Cold-shock' DNA-binding domain CH60_1523 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH60_1524 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1525 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1525 PF12911 N-terminal TM domain of oligopeptide transport permease C CH60_1526 PF00005 ABC transporter CH60_1527 PF00005 ABC transporter CH60_1529 PF00547 Urease, gamma subunit CH60_153 PF07650 KH domain CH60_153 PF00189 Ribosomal protein S3, C-terminal domain CH60_1530 PF00699 Urease beta subunit CH60_1531 PF00449 Urease alpha-subunit, N-terminal domain CH60_1531 PF01979 Amidohydrolase family CH60_1532 PF05194 UreE urease accessory protein, C-terminal domain CH60_1532 PF02814 UreE urease accessory protein, N-terminal domain CH60_1533 PF01730 UreF CH60_1534 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH60_1535 PF01774 UreD urease accessory protein CH60_1536 PF03253 Urea transporter CH60_1537 PF03824 High-affinity nickel-transport protein CH60_1538 PF06411 HdeA/HdeB family CH60_1539 PF07885 Ion channel CH60_1539 PF02254 TrkA-N domain CH60_154 PF00252 Ribosomal protein L16p/L10e CH60_1540 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH60_1541 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH60_1542 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH60_1543 PF02378 Phosphotransferase system, EIIC CH60_1544 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH60_1545 PF12833 Helix-turn-helix domain CH60_1545 PF07883 Cupin domain CH60_1546 PF04794 YdjC-like protein CH60_1549 PF03925 SeqA protein C-terminal domain CH60_1549 PF17206 SeqA protein N-terminal domain CH60_155 PF00831 Ribosomal L29 protein CH60_1550 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH60_1550 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH60_1550 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH60_1550 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH60_1554 PF00072 Response regulator receiver domain CH60_1554 PF00486 Transcriptional regulatory protein, C terminal CH60_1555 PF00512 His Kinase A (phospho-acceptor) domain CH60_1555 PF02702 Osmosensitive K+ channel His kinase sensor domain CH60_1555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_1555 PF13492 GAF domain CH60_1555 PF13493 Domain of unknown function (DUF4118) CH60_1556 PF02669 K+-transporting ATPase, c chain CH60_1558 PF03814 Potassium-transporting ATPase A subunit CH60_1559 PF10725 Protein of unknown function (DUF2517) CH60_156 PF00366 Ribosomal protein S17 CH60_1560 PF08349 Protein of unknown function (DUF1722) CH60_1561 PF00875 DNA photolyase CH60_1561 PF03441 FAD binding domain of DNA photolyase CH60_1562 PF02112 cAMP phosphodiesterases class-II CH60_1563 PF01784 NIF3 (NGG1p interacting factor 3) CH60_1565 PF02682 Carboxyltransferase domain, subdomain C and D CH60_1566 PF02626 Carboxyltransferase domain, subdomain A and B CH60_1567 PF03746 LamB/YcsF family CH60_157 PF00238 Ribosomal protein L14p/L23e CH60_1570 PF01470 Pyroglutamyl peptidase CH60_1571 PF03167 Uracil DNA glycosylase superfamily CH60_1572 PF01228 Glycine radical CH60_1575 PF12796 Ankyrin repeats (3 copies) CH60_1579 PF05175 Methyltransferase small domain CH60_158 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH60_158 PF00467 KOW motif CH60_1580 PF02910 Fumarate reductase flavoprotein C-term CH60_1580 PF00890 FAD binding domain CH60_1581 PF04542 Sigma-70 region 2 CH60_1581 PF08281 Sigma-70, region 4 CH60_1582 PF03873 Anti sigma-E protein RseA, C-terminal domain CH60_1582 PF03872 Anti sigma-E protein RseA, N-terminal domain CH60_1583 PF03888 MucB/RseB N-terminal domain CH60_1583 PF17188 MucB/RseB C-terminal domain CH60_1586 PF06421 GTP-binding protein LepA C-terminus CH60_1586 PF00679 Elongation factor G C-terminus CH60_1586 PF00009 Elongation factor Tu GTP binding domain CH60_1586 PF03144 Elongation factor Tu domain 2 CH60_1587 PF10502 Signal peptidase, peptidase S26 CH60_1588 PF00035 Double-stranded RNA binding motif CH60_1588 PF14622 Ribonuclease-III-like CH60_1589 PF01926 50S ribosome-binding GTPase CH60_1589 PF07650 KH domain CH60_159 PF00281 Ribosomal protein L5 CH60_159 PF00673 ribosomal L5P family C-terminus CH60_1590 PF02565 Recombination protein O C terminal CH60_1590 PF11967 Recombination protein O N terminal CH60_1591 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH60_1592 PF01648 4'-phosphopantetheinyl transferase superfamily CH60_1593 PF01797 Transposase IS200 like CH60_1594 PF12838 4Fe-4S dicluster domain CH60_1595 PF01380 SIS domain CH60_1595 PF01418 Helix-turn-helix domain, rpiR family CH60_1596 PF02796 Helix-turn-helix domain of resolvase CH60_1596 PF00665 Integrase core domain CH60_1599 PF01695 IstB-like ATP binding protein CH60_16 PF00413 Matrixin CH60_16 PF08548 Peptidase M10 serralysin C terminal CH60_16 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH60_160 PF00253 Ribosomal protein S14p/S29e CH60_1600 PF01418 Helix-turn-helix domain, rpiR family CH60_1600 PF01380 SIS domain CH60_1601 PF01380 SIS domain CH60_1603 PF14437 MafB19-like deaminase CH60_1604 PF01464 Transglycosylase SLT domain CH60_1604 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH60_1605 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH60_1605 PF02769 AIR synthase related protein, C-terminal domain CH60_1605 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH60_1609 PF01797 Transposase IS200 like CH60_161 PF00410 Ribosomal protein S8 CH60_1610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_1610 PF00512 His Kinase A (phospho-acceptor) domain CH60_1611 PF13942 YfhG lipoprotein CH60_1612 PF00158 Sigma-54 interaction domain CH60_1612 PF00072 Response regulator receiver domain CH60_1613 PF00795 Carbon-nitrogen hydrolase CH60_1613 PF02540 NAD synthase CH60_1614 PF00543 Nitrogen regulatory protein P-II CH60_1617 PF00970 Oxidoreductase FAD-binding domain CH60_1617 PF00175 Oxidoreductase NAD-binding domain CH60_1617 PF00042 Globin CH60_1618 PF00464 Serine hydroxymethyltransferase CH60_1619 PF13505 Outer membrane protein beta-barrel domain CH60_162 PF00347 Ribosomal protein L6 CH60_1620 PF00874 PRD domain CH60_1621 PF12832 MFS_1 like family CH60_1622 PF06226 Protein of unknown function (DUF1007) CH60_1623 PF03824 High-affinity nickel-transport protein CH60_1624 PF00459 Inositol monophosphatase family CH60_1625 PF00588 SpoU rRNA Methylase family CH60_1626 PF02082 Transcriptional regulator CH60_1627 PF00266 Aminotransferase class-V CH60_1628 PF01592 NifU-like N terminal domain CH60_1629 PF01521 Iron-sulphur cluster biosynthesis CH60_163 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH60_1630 PF00226 DnaJ domain CH60_1630 PF07743 HSCB C-terminal oligomerisation domain CH60_1631 PF00012 Hsp70 protein CH60_1632 PF00111 2Fe-2S iron-sulfur cluster binding domain CH60_1633 PF04384 Iron-sulphur cluster assembly CH60_1634 PF12404 Peptidase CH60_1634 PF00883 Cytosol aminopeptidase family, catalytic domain CH60_1635 PF14581 SseB protein C-terminal domain CH60_1635 PF07179 SseB protein N-terminal domain CH60_1637 PF03212 Pertactin CH60_1637 PF03797 Autotransporter beta-domain CH60_1637 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH60_1638 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH60_1638 PF03212 Pertactin CH60_1638 PF03797 Autotransporter beta-domain CH60_164 PF03719 Ribosomal protein S5, C-terminal domain CH60_164 PF00333 Ribosomal protein S5, N-terminal domain CH60_1641 PF00334 Nucleoside diphosphate kinase CH60_1642 PF04055 Radical SAM superfamily CH60_1644 PF13464 Domain of unknown function (DUF4115) CH60_1645 PF04551 GcpE protein CH60_1646 PF03129 Anticodon binding domain CH60_1646 PF13393 Histidyl-tRNA synthetase CH60_1647 PF09976 Tetratricopeptide repeat-like domain CH60_1648 PF13360 PQQ-like domain CH60_1649 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH60_1649 PF01926 50S ribosome-binding GTPase CH60_165 PF00327 Ribosomal protein L30p/L7e CH60_1651 PF07191 zinc-ribbons CH60_1652 PF02601 Exonuclease VII, large subunit CH60_1652 PF13742 OB-fold nucleic acid binding domain CH60_1653 PF00478 IMP dehydrogenase / GMP reductase domain CH60_1653 PF00571 CBS domain CH60_1654 PF02540 NAD synthase CH60_1654 PF00117 Glutamine amidotransferase class-I CH60_1654 PF00958 GMP synthase C terminal domain CH60_1655 PF01797 Transposase IS200 like CH60_1656 PF05638 Type VI secretion system effector, Hcp CH60_166 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH60_1662 PF00872 Transposase, Mutator family CH60_1663 PF13419 Haloacid dehalogenase-like hydrolase CH60_1664 PF14002 YniB-like protein CH60_1666 PF00950 ABC 3 transport family CH60_1667 PF00950 ABC 3 transport family CH60_1668 PF00005 ABC transporter CH60_1669 PF01297 Zinc-uptake complex component A periplasmic CH60_167 PF00344 SecY translocase CH60_1670 PF01464 Transglycosylase SLT domain CH60_1671 PF01914 MarC family integral membrane protein CH60_1673 PF13619 KTSC domain CH60_1674 PF03129 Anticodon binding domain CH60_1674 PF02824 TGS domain CH60_1674 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH60_1674 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH60_1675 PF00707 Translation initiation factor IF-3, C-terminal domain CH60_1675 PF05198 Translation initiation factor IF-3, N-terminal domain CH60_1676 PF01632 Ribosomal protein L35 CH60_1677 PF00453 Ribosomal protein L20 CH60_1678 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH60_1678 PF01409 tRNA synthetases class II core domain (F) CH60_1679 PF03483 B3/4 domain CH60_1679 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH60_1679 PF01588 Putative tRNA binding domain CH60_1679 PF03147 Ferredoxin-fold anticodon binding domain CH60_1679 PF03484 tRNA synthetase B5 domain CH60_168 PF00444 Ribosomal protein L36 CH60_1680 PF00216 Bacterial DNA-binding protein CH60_1682 PF01032 FecCD transport family CH60_1683 PF00255 Glutathione peroxidase CH60_1684 PF00005 ABC transporter CH60_1685 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH60_1686 PF00535 Glycosyl transferase family 2 CH60_1687 PF02911 Formyl transferase, C-terminal domain CH60_1687 PF01370 NAD dependent epimerase/dehydratase family CH60_1687 PF00551 Formyl transferase CH60_1688 PF01522 Polysaccharide deacetylase CH60_1689 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CH60_169 PF00416 Ribosomal protein S13/S18 CH60_1690 PF00892 EamA-like transporter family CH60_1692 PF00877 NlpC/P60 family CH60_1693 PF03099 Biotin/lipoate A/B protein ligase family CH60_1693 PF10437 Bacterial lipoate protein ligase C-terminus CH60_1694 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH60_1695 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH60_1696 PF00793 DAHP synthetase I family CH60_1697 PF03618 Kinase/pyrophosphorylase CH60_1698 PF00391 PEP-utilising enzyme, mobile domain CH60_1698 PF02896 PEP-utilising enzyme, TIM barrel domain CH60_1698 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH60_1699 PF01594 AI-2E family transporter CH60_17 PF04445 Putative SAM-dependent methyltransferase CH60_170 PF00411 Ribosomal protein S11 CH60_1700 PF02913 FAD linked oxidases, C-terminal domain CH60_1700 PF01565 FAD binding domain CH60_1700 PF13183 4Fe-4S dicluster domain CH60_1701 PF03061 Thioesterase superfamily CH60_1702 PF01521 Iron-sulphur cluster biosynthesis CH60_1703 PF01458 Uncharacterized protein family (UPF0051) CH60_1704 PF00005 ABC transporter CH60_1705 PF01458 Uncharacterized protein family (UPF0051) CH60_1706 PF00266 Aminotransferase class-V CH60_1707 PF02657 Fe-S metabolism associated domain CH60_1708 PF01476 LysM domain CH60_1708 PF17969 L,D-transpeptidase C-terminal domain CH60_1708 PF03734 L,D-transpeptidase catalytic domain CH60_1709 PF01695 IstB-like ATP binding protein CH60_171 PF00163 Ribosomal protein S4/S9 N-terminal domain CH60_171 PF01479 S4 domain CH60_1711 PF00665 Integrase core domain CH60_1711 PF02796 Helix-turn-helix domain of resolvase CH60_1712 PF01797 Transposase IS200 like CH60_1713 PF04728 Lipoprotein leucine-zipper CH60_1714 PF02887 Pyruvate kinase, alpha/beta domain CH60_1714 PF00224 Pyruvate kinase, barrel domain CH60_1717 PF01554 MatE CH60_1718 PF00677 Lumazine binding domain CH60_172 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH60_172 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH60_172 PF01000 RNA polymerase Rpb3/RpoA insert domain CH60_1720 PF07690 Major Facilitator Superfamily CH60_1721 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_1721 PF03466 LysR substrate binding domain CH60_1722 PF00356 Bacterial regulatory proteins, lacI family CH60_1724 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH60_1724 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH60_1725 PF00877 NlpC/P60 family CH60_1727 PF00462 Glutaredoxin CH60_1728 PF00929 Exonuclease CH60_1729 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH60_173 PF01196 Ribosomal protein L17 CH60_1730 PF18807 Tripartite Tc toxins repeat CH60_1730 PF14431 YwqJ-like deaminase CH60_1731 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH60_1732 PF16925 Tetracyclin repressor-like, C-terminal domain CH60_1732 PF00440 Bacterial regulatory proteins, tetR family CH60_1733 PF08019 Phosphoethanolamine transferase EptA/EptB CH60_1733 PF00884 Sulfatase CH60_1734 PF06945 Protein of unknown function (DUF1289) CH60_1735 PF00248 Aldo/keto reductase family CH60_1736 PF01047 MarR family CH60_1737 PF05433 Glycine zipper 2TM domain CH60_1738 PF03702 Anhydro-N-acetylmuramic acid kinase CH60_1739 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH60_174 PF13411 MerR HTH family regulatory protein CH60_1740 PF01243 Pyridoxamine 5'-phosphate oxidase CH60_1740 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH60_1741 PF01479 S4 domain CH60_1741 PF00579 tRNA synthetases class I (W and Y) CH60_1742 PF08543 Phosphomethylpyrimidine kinase CH60_1743 PF00043 Glutathione S-transferase, C-terminal domain CH60_1743 PF02798 Glutathione S-transferase, N-terminal domain CH60_1744 PF11656 YjbD family (DUF3811) CH60_1745 PF04893 Yip1 domain CH60_1746 PF00854 POT family CH60_1749 PF00005 ABC transporter CH60_175 PF03889 Alternative ribosome-rescue factor A CH60_1750 PF00005 ABC transporter CH60_1750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH60_1751 PF12911 N-terminal TM domain of oligopeptide transport permease C CH60_1751 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1752 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1753 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH60_1754 PF01797 Transposase IS200 like CH60_1755 PF00158 Sigma-54 interaction domain CH60_1755 PF18024 Helix-turn-helix domain CH60_1758 PF05128 Domain of unknown function (DUF697) CH60_1759 PF04317 YcjX-like family, DUF463 CH60_176 PF01741 Large-conductance mechanosensitive channel, MscL CH60_1761 PF04024 PspC domain CH60_1762 PF06667 Phage shock protein B CH60_1763 PF04012 PspA/IM30 family CH60_1764 PF02954 Bacterial regulatory protein, Fis family CH60_1764 PF00158 Sigma-54 interaction domain CH60_1765 PF01797 Transposase IS200 like CH60_1766 PF08534 Redoxin CH60_1767 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH60_1767 PF13378 Enolase C-terminal domain-like CH60_1768 PF00246 Zinc carboxypeptidase CH60_1769 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH60_177 PF02254 TrkA-N domain CH60_177 PF02080 TrkA-C domain CH60_1770 PF01544 CorA-like Mg2+ transporter protein CH60_1772 PF07859 alpha/beta hydrolase fold CH60_1772 PF13472 GDSL-like Lipase/Acylhydrolase family CH60_1774 PF01171 PP-loop family CH60_1775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH60_1775 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH60_1775 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH60_1775 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CH60_1775 PF10371 Domain of unknown function CH60_1776 PF00893 Small Multidrug Resistance protein CH60_1777 PF02308 MgtC family CH60_1778 PF03891 Domain of unknown function (DUF333) CH60_1779 PF03724 META domain CH60_178 PF01029 NusB family CH60_178 PF01189 16S rRNA methyltransferase RsmB/F CH60_1780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH60_1780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH60_1781 PF11739 Dicarboxylate transport CH60_1782 PF13617 YnbE-like lipoprotein CH60_1783 PF07027 Protein of unknown function (DUF1318) CH60_1784 PF01232 Mannitol dehydrogenase Rossmann domain CH60_1784 PF08125 Mannitol dehydrogenase C-terminal domain CH60_1785 PF04198 Putative sugar-binding domain CH60_1785 PF00325 Bacterial regulatory proteins, crp family CH60_1786 PF02525 Flavodoxin-like fold CH60_1787 PF00271 Helicase conserved C-terminal domain CH60_1787 PF00270 DEAD/DEAH box helicase CH60_1787 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH60_1787 PF11898 Domain of unknown function (DUF3418) CH60_1787 PF04408 Helicase associated domain (HA2) CH60_179 PF02911 Formyl transferase, C-terminal domain CH60_179 PF00551 Formyl transferase CH60_1790 PF00089 Trypsin CH60_1792 PF01292 Prokaryotic cytochrome b561 CH60_1793 PF04264 YceI-like domain CH60_1795 PF14431 YwqJ-like deaminase CH60_1795 PF18807 Tripartite Tc toxins repeat CH60_1796 PF01797 Transposase IS200 like CH60_1797 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH60_1798 PF00672 HAMP domain CH60_1798 PF00512 His Kinase A (phospho-acceptor) domain CH60_1798 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_1799 PF00486 Transcriptional regulatory protein, C terminal CH60_1799 PF00072 Response regulator receiver domain CH60_18 PF01432 Peptidase family M3 CH60_180 PF01327 Polypeptide deformylase CH60_1801 PF13520 Amino acid permease CH60_1802 PF07338 Protein of unknown function (DUF1471) CH60_1803 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH60_1803 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH60_1803 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH60_1804 PF02233 NAD(P) transhydrogenase beta subunit CH60_1805 PF00582 Universal stress protein family CH60_1806 PF00027 Cyclic nucleotide-binding domain CH60_1806 PF13545 Crp-like helix-turn-helix domain CH60_1807 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH60_1807 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH60_1808 PF00245 Alkaline phosphatase CH60_181 PF02481 DNA recombination-mediator protein A CH60_181 PF17782 DprA winged helix domain CH60_1811 PF13419 Haloacid dehalogenase-like hydrolase CH60_1812 PF01842 ACT domain CH60_1813 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH60_1813 PF00205 Thiamine pyrophosphate enzyme, central domain CH60_1813 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH60_1818 PF01048 Phosphorylase superfamily CH60_1818 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH60_1819 PF00005 ABC transporter CH60_182 PF04361 Protein of unknown function (DUF494) CH60_1820 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1821 PF09084 NMT1/THI5 like CH60_1822 PF13407 Periplasmic binding protein domain CH60_1824 PF00356 Bacterial regulatory proteins, lacI family CH60_1825 PF00654 Voltage gated chloride channel CH60_1828 PF00480 ROK family CH60_1829 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_1829 PF03466 LysR substrate binding domain CH60_183 PF01396 Topoisomerase DNA binding C4 zinc finger CH60_1830 PF07690 Major Facilitator Superfamily CH60_1831 PF05472 DNA replication terminus site-binding protein (Ter protein) CH60_1832 PF10415 Fumarase C C-terminus CH60_1832 PF00206 Lyase CH60_1833 PF01238 Phosphomannose isomerase type I CH60_1834 PF06097 Bacterial protein of unknown function (DUF945) CH60_1836 PF13593 SBF-like CPA transporter family (DUF4137) CH60_1837 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH60_1837 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH60_1838 PF12833 Helix-turn-helix domain CH60_1838 PF02311 AraC-like ligand binding domain CH60_1839 PF02653 Branched-chain amino acid transport system / permease component CH60_184 PF01300 Telomere recombination CH60_1840 PF00005 ABC transporter CH60_1841 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH60_1842 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH60_1843 PF11762 L-arabinose isomerase C-terminal domain CH60_1843 PF02610 L-arabinose isomerase CH60_1845 PF00005 ABC transporter CH60_1845 PF00664 ABC transporter transmembrane region CH60_1845 PF03412 Peptidase C39 family CH60_1847 PF13533 Biotin-lipoyl like CH60_1848 PF00664 ABC transporter transmembrane region CH60_1848 PF00005 ABC transporter CH60_1848 PF03412 Peptidase C39 family CH60_1849 PF10754 Protein of unknown function (DUF2569) CH60_185 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH60_185 PF08501 Shikimate dehydrogenase substrate binding domain CH60_185 PF01488 Shikimate / quinate 5-dehydrogenase CH60_1850 PF02508 Rnf-Nqr subunit, membrane protein CH60_1851 PF04060 Putative Fe-S cluster CH60_1852 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH60_1852 PF13375 RnfC Barrel sandwich hybrid domain CH60_1852 PF10531 SLBB domain CH60_1852 PF13237 4Fe-4S dicluster domain CH60_1853 PF12833 Helix-turn-helix domain CH60_1853 PF06445 GyrI-like small molecule binding domain CH60_1854 PF03116 NQR2, RnfD, RnfE family CH60_1855 PF04205 FMN-binding domain CH60_1856 PF02508 Rnf-Nqr subunit, membrane protein CH60_1857 PF00633 Helix-hairpin-helix motif CH60_1857 PF10576 Iron-sulfur binding domain of endonuclease III CH60_1857 PF00730 HhH-GPD superfamily base excision DNA repair protein CH60_1858 PF01370 NAD dependent epimerase/dehydratase family CH60_1859 PF07690 Major Facilitator Superfamily CH60_186 PF00132 Bacterial transferase hexapeptide (six repeats) CH60_1860 PF00773 RNB domain CH60_1860 PF08206 Ribonuclease B OB domain CH60_1860 PF17876 Cold shock domain CH60_1860 PF00575 S1 RNA binding domain CH60_1861 PF13722 5TM C-terminal transporter carbon starvation CstA CH60_1861 PF02554 Carbon starvation protein CstA CH60_1862 PF04328 Selenoprotein, putative CH60_1863 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH60_1865 PF00596 Class II Aldolase and Adducin N-terminal domain CH60_1866 PF05433 Glycine zipper 2TM domain CH60_1867 PF01253 Translation initiation factor SUI1 CH60_1868 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH60_1870 PF18073 Rubredoxin metal binding domain CH60_1871 PF06305 Lipopolysaccharide assembly protein A domain CH60_1872 PF01569 PAP2 superfamily CH60_1873 PF00925 GTP cyclohydrolase II CH60_1874 PF00694 Aconitase C-terminal domain CH60_1874 PF00330 Aconitase family (aconitate hydratase) CH60_1876 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_1876 PF03466 LysR substrate binding domain CH60_1877 PF01396 Topoisomerase DNA binding C4 zinc finger CH60_1877 PF01131 DNA topoisomerase CH60_1877 PF01751 Toprim domain CH60_1877 PF08272 Topoisomerase I zinc-ribbon-like CH60_1879 PF10692 Protein of unknown function (DUF2498) CH60_1880 PF01343 Peptidase family S49 CH60_1880 PF08496 Peptidase family S49 N-terminal CH60_1881 PF00106 short chain dehydrogenase CH60_1882 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH60_1883 PF00849 RNA pseudouridylate synthase CH60_1883 PF01479 S4 domain CH60_1884 PF01300 Telomere recombination CH60_1885 PF02811 PHP domain CH60_1886 PF04715 Anthranilate synthase component I, N terminal region CH60_1886 PF00425 chorismate binding enzyme CH60_1887 PF00117 Glutamine amidotransferase class-I CH60_1888 PF00591 Glycosyl transferase family, a/b domain CH60_1888 PF02885 Glycosyl transferase family, helical bundle domain CH60_1889 PF00218 Indole-3-glycerol phosphate synthase CH60_1889 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH60_1890 PF00291 Pyridoxal-phosphate dependent enzyme CH60_1891 PF00290 Tryptophan synthase alpha chain CH60_1893 PF03922 OmpW family CH60_1897 PF04279 Intracellular septation protein A CH60_1898 PF03061 Thioesterase superfamily CH60_1899 PF00872 Transposase, Mutator family CH60_19 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH60_1900 PF00872 Transposase, Mutator family CH60_1901 PF03544 Gram-negative bacterial TonB protein C-terminal CH60_1903 PF03795 YCII-related domain CH60_1906 PF13505 Outer membrane protein beta-barrel domain CH60_1907 PF13091 PLD-like domain CH60_1907 PF13396 Phospholipase_D-nuclease N-terminal CH60_1908 PF04269 Protein of unknown function, DUF440 CH60_1910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH60_1910 PF00005 ABC transporter CH60_1911 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH60_1911 PF00005 ABC transporter CH60_1912 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1912 PF12911 N-terminal TM domain of oligopeptide transport permease C CH60_1913 PF00528 Binding-protein-dependent transport system inner membrane component CH60_1914 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH60_1915 PF01914 MarC family integral membrane protein CH60_1916 PF00465 Iron-containing alcohol dehydrogenase CH60_1916 PF00171 Aldehyde dehydrogenase family CH60_1917 PF00265 Thymidine kinase CH60_1918 PF00816 H-NS histone family CH60_1919 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH60_1919 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH60_1919 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH60_1920 PF00072 Response regulator receiver domain CH60_1921 PF02810 SEC-C motif CH60_1922 PF01842 ACT domain CH60_1922 PF00551 Formyl transferase CH60_1925 PF03466 LysR substrate binding domain CH60_1925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_1926 PF03372 Endonuclease/Exonuclease/phosphatase family CH60_1927 PF00293 NUDIX domain CH60_1928 PF07383 Protein of unknown function (DUF1496) CH60_1929 PF01751 Toprim domain CH60_1929 PF01131 DNA topoisomerase CH60_193 PF01527 Transposase CH60_1930 PF02769 AIR synthase related protein, C-terminal domain CH60_1930 PF00586 AIR synthase related protein, N-terminal domain CH60_1931 PF00881 Nitroreductase family CH60_1932 PF01343 Peptidase family S49 CH60_1933 PF00710 Asparaginase, N-terminal CH60_1933 PF17763 Glutaminase/Asparaginase C-terminal domain CH60_1934 PF00857 Isochorismatase family CH60_1935 PF07023 Protein of unknown function (DUF1315) CH60_1936 PF01641 SelR domain CH60_1937 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH60_1937 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH60_1938 PF01263 Aldose 1-epimerase CH60_1939 PF06629 MltA-interacting protein MipA CH60_194 PF13276 HTH-like domain CH60_194 PF13683 Integrase core domain CH60_1940 PF08298 PrkA AAA domain CH60_1940 PF06798 PrkA serine protein kinase C-terminal domain CH60_1941 PF04285 Protein of unknown function (DUF444) CH60_1943 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_1943 PF03466 LysR substrate binding domain CH60_1944 PF05726 Pirin C-terminal cupin domain CH60_1944 PF02678 Pirin CH60_1945 PF07690 Major Facilitator Superfamily CH60_1946 PF01266 FAD dependent oxidoreductase CH60_1947 PF04293 SpoVR like protein CH60_1948 PF00392 Bacterial regulatory proteins, gntR family CH60_1948 PF07840 FadR C-terminal domain CH60_1949 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CH60_195 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH60_195 PF01367 5'-3' exonuclease, C-terminal SAM fold CH60_1950 PF02600 Disulfide bond formation protein DsbB CH60_1953 PF00266 Aminotransferase class-V CH60_1955 PF00872 Transposase, Mutator family CH60_1957 PF00872 Transposase, Mutator family CH60_196 PF01695 IstB-like ATP binding protein CH60_1960 PF06530 Phage antitermination protein Q CH60_1962 PF05772 NinB protein CH60_1965 PF01695 IstB-like ATP binding protein CH60_1967 PF00665 Integrase core domain CH60_1967 PF02796 Helix-turn-helix domain of resolvase CH60_1968 PF00589 Phage integrase family CH60_1968 PF12167 Arm DNA-binding domain CH60_1969 PF03692 Putative zinc- or iron-chelating domain CH60_1970 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH60_1971 PF13406 Transglycosylase SLT domain CH60_1972 PF05166 YcgL domain CH60_1973 PF03775 Septum formation inhibitor MinC, C-terminal domain CH60_1973 PF05209 Septum formation inhibitor MinC, N-terminal domain CH60_1974 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH60_1975 PF03776 Septum formation topological specificity factor MinE CH60_1976 PF00570 HRDC domain CH60_1976 PF01612 3'-5' exonuclease CH60_1977 PF00501 AMP-binding enzyme CH60_1977 PF13193 AMP-binding enzyme C-terminal domain CH60_1978 PF03843 Outer membrane lipoprotein Slp family CH60_1979 PF00814 Glycoprotease family CH60_1980 PF13307 Helicase C-terminal domain CH60_1980 PF04851 Type III restriction enzyme, res subunit CH60_1981 PF01042 Endoribonuclease L-PSP CH60_1982 PF00893 Small Multidrug Resistance protein CH60_1983 PF00893 Small Multidrug Resistance protein CH60_1984 PF01081 KDPG and KHG aldolase CH60_1986 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH60_1986 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH60_1987 PF01380 SIS domain CH60_1987 PF01418 Helix-turn-helix domain, rpiR family CH60_1988 PF00224 Pyruvate kinase, barrel domain CH60_1988 PF02887 Pyruvate kinase, alpha/beta domain CH60_1989 PF03279 Bacterial lipid A biosynthesis acyltransferase CH60_199 PF00665 Integrase core domain CH60_199 PF02796 Helix-turn-helix domain of resolvase CH60_1990 PF01551 Peptidase family M23 CH60_1990 PF01476 LysM domain CH60_1990 PF08525 Opacity-associated protein A N-terminal motif CH60_1991 PF01297 Zinc-uptake complex component A periplasmic CH60_1992 PF00005 ABC transporter CH60_1993 PF00950 ABC 3 transport family CH60_1994 PF17864 RuvB AAA lid domain CH60_1994 PF05491 RuvB C-terminal winged helix domain CH60_1994 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH60_1995 PF07499 RuvA, C-terminal domain CH60_1995 PF01330 RuvA N terminal domain CH60_1996 PF02075 Crossover junction endodeoxyribonuclease RuvC CH60_1997 PF01709 Transcriptional regulator CH60_1998 PF00293 NUDIX domain CH60_1999 PF01336 OB-fold nucleic acid binding domain CH60_1999 PF00152 tRNA synthetases class II (D, K and N) CH60_1999 PF02938 GAD domain CH60_2 PF00486 Transcriptional regulatory protein, C terminal CH60_2 PF00072 Response regulator receiver domain CH60_20 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH60_20 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH60_200 PF03948 Ribosomal protein L9, C-terminal domain CH60_200 PF01281 Ribosomal protein L9, N-terminal domain CH60_2000 PF00872 Transposase, Mutator family CH60_2001 PF00872 Transposase, Mutator family CH60_2002 PF01904 Protein of unknown function DUF72 CH60_2003 PF01124 MAPEG family CH60_2004 PF13649 Methyltransferase domain CH60_2005 PF08003 Protein of unknown function (DUF1698) CH60_2006 PF03932 CutC family CH60_2007 PF06185 YecM protein CH60_2008 PF00750 tRNA synthetases class I (R) CH60_2008 PF05746 DALR anticodon binding domain CH60_2008 PF03485 Arginyl tRNA synthetase N terminal domain CH60_201 PF01084 Ribosomal protein S18 CH60_2011 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH60_2011 PF08479 POTRA domain, ShlB-type CH60_2011 PF17287 POTRA domain CH60_2012 PF03023 Lipid II flippase MurJ CH60_2013 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH60_2014 PF13302 Acetyltransferase (GNAT) domain CH60_2015 PF07690 Major Facilitator Superfamily CH60_2016 PF07273 Protein of unknown function (DUF1439) CH60_2017 PF02613 Nitrate reductase delta subunit CH60_2018 PF02811 PHP domain CH60_202 PF01250 Ribosomal protein S6 CH60_2020 PF00480 ROK family CH60_2020 PF01325 Iron dependent repressor, N-terminal DNA binding domain CH60_2021 PF03009 Glycerophosphoryl diester phosphodiesterase family CH60_2022 PF00005 ABC transporter CH60_2022 PF08402 TOBE domain CH60_2023 PF01797 Transposase IS200 like CH60_2024 PF00005 ABC transporter CH60_2024 PF08402 TOBE domain CH60_2025 PF00528 Binding-protein-dependent transport system inner membrane component CH60_2026 PF00528 Binding-protein-dependent transport system inner membrane component CH60_2028 PF03009 Glycerophosphoryl diester phosphodiesterase family CH60_2030 PF01740 STAS domain CH60_2030 PF00916 Sulfate permease family CH60_2031 PF00793 DAHP synthetase I family CH60_2032 PF13369 Transglutaminase-like superfamily CH60_2033 PF04247 Invasion gene expression up-regulator, SirB CH60_2034 PF13847 Methyltransferase domain CH60_2034 PF17827 PrmC N-terminal domain CH60_2035 PF03462 PCRF domain CH60_2035 PF00472 RF-1 domain CH60_2036 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH60_2036 PF01488 Shikimate / quinate 5-dehydrogenase CH60_2036 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH60_2037 PF03550 Outer membrane lipoprotein LolB CH60_2038 PF08544 GHMP kinases C terminal CH60_2038 PF00288 GHMP kinases N terminal domain CH60_2039 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH60_2039 PF14572 Phosphoribosyl synthetase-associated domain CH60_204 PF00326 Prolyl oligopeptidase family CH60_2040 PF10762 Protein of unknown function (DUF2583) CH60_2041 PF01195 Peptidyl-tRNA hydrolase CH60_2042 PF06071 Protein of unknown function (DUF933) CH60_2042 PF01926 50S ribosome-binding GTPase CH60_205 PF07338 Protein of unknown function (DUF1471) CH60_2051 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CH60_2052 PF00486 Transcriptional regulatory protein, C terminal CH60_2052 PF00072 Response regulator receiver domain CH60_2053 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_2053 PF00512 His Kinase A (phospho-acceptor) domain CH60_2053 PF00672 HAMP domain CH60_206 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH60_206 PF18158 Adaptive response protein AidB N-terminal domain CH60_206 PF02770 Acyl-CoA dehydrogenase, middle domain CH60_2062 PF08242 Methyltransferase domain CH60_2067 PF00872 Transposase, Mutator family CH60_207 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH60_207 PF00588 SpoU rRNA Methylase family CH60_2075 PF01370 NAD dependent epimerase/dehydratase family CH60_2076 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH60_2076 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH60_2077 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH60_2077 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH60_2079 PF05962 HutD CH60_208 PF17876 Cold shock domain CH60_208 PF00773 RNB domain CH60_208 PF08461 Ribonuclease R winged-helix domain CH60_208 PF00575 S1 RNA binding domain CH60_208 PF08206 Ribonuclease B OB domain CH60_2080 PF01979 Amidohydrolase family CH60_2081 PF07702 UTRA domain CH60_2081 PF00392 Bacterial regulatory proteins, gntR family CH60_2082 PF00665 Integrase core domain CH60_2082 PF02796 Helix-turn-helix domain of resolvase CH60_2083 PF02796 Helix-turn-helix domain of resolvase CH60_2083 PF00665 Integrase core domain CH60_2084 PF01695 IstB-like ATP binding protein CH60_209 PF02082 Transcriptional regulator CH60_2090 PF01168 Alanine racemase, N-terminal domain CH60_2090 PF00842 Alanine racemase, C-terminal domain CH60_2091 PF00872 Transposase, Mutator family CH60_2093 PF13018 Extended Signal Peptide of Type V secretion system CH60_2093 PF03895 YadA-like membrane anchor domain CH60_2093 PF05662 Coiled stalk of trimeric autotransporter adhesin CH60_2093 PF05658 Head domain of trimeric autotransporter adhesin CH60_2094 PF03895 YadA-like membrane anchor domain CH60_2094 PF05662 Coiled stalk of trimeric autotransporter adhesin CH60_2094 PF05658 Head domain of trimeric autotransporter adhesin CH60_2094 PF13018 Extended Signal Peptide of Type V secretion system CH60_2095 PF01510 N-acetylmuramoyl-L-alanine amidase CH60_2096 PF04344 Chemotaxis phosphatase, CheZ CH60_2097 PF00072 Response regulator receiver domain CH60_2098 PF00072 Response regulator receiver domain CH60_2098 PF01339 CheB methylesterase CH60_2099 PF01739 CheR methyltransferase, SAM binding domain CH60_2099 PF03705 CheR methyltransferase, all-alpha domain CH60_21 PF13556 PucR C-terminal helix-turn-helix domain CH60_21 PF17853 GGDEF-like domain CH60_21 PF05651 Putative sugar diacid recognition CH60_210 PF00709 Adenylosuccinate synthetase CH60_2100 PF00672 HAMP domain CH60_2100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH60_2100 PF02203 Tar ligand binding domain homologue CH60_2101 PF00672 HAMP domain CH60_2101 PF02203 Tar ligand binding domain homologue CH60_2101 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH60_2104 PF12951 Passenger-associated-transport-repeat CH60_2105 PF13309 HTH domain CH60_2105 PF08348 YheO-like PAS domain CH60_2107 PF01042 Endoribonuclease L-PSP CH60_2108 PF07690 Major Facilitator Superfamily CH60_2109 PF01584 CheW-like domain CH60_211 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CH60_2110 PF09078 CheY binding CH60_2110 PF02895 Signal transducing histidine kinase, homodimeric domain CH60_2110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_2110 PF01584 CheW-like domain CH60_2110 PF01627 Hpt domain CH60_2111 PF00691 OmpA family CH60_2111 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH60_2112 PF01618 MotA/TolQ/ExbB proton channel family CH60_2113 PF05280 Flagellar transcriptional activator (FlhC) CH60_2114 PF05247 Flagellar transcriptional activator (FlhD) CH60_2115 PF00689 Cation transporting ATPase, C-terminus CH60_2115 PF00690 Cation transporter/ATPase, N-terminus CH60_2116 PF02308 MgtC family CH60_2117 PF02203 Tar ligand binding domain homologue CH60_2117 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH60_2117 PF00672 HAMP domain CH60_2118 PF00672 HAMP domain CH60_2118 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH60_2118 PF02203 Tar ligand binding domain homologue CH60_2119 PF10781 Dextransucrase DSRB CH60_212 PF01145 SPFH domain / Band 7 family CH60_2120 PF00313 'Cold-shock' DNA-binding domain CH60_2121 PF16353 Domain of unknown function(DUF4981) CH60_2121 PF02929 Beta galactosidase small chain CH60_2121 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH60_2121 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH60_2121 PF00703 Glycosyl hydrolases family 2 CH60_2122 PF08659 KR domain CH60_2122 PF00107 Zinc-binding dehydrogenase CH60_2122 PF16197 Ketoacyl-synthetase C-terminal extension CH60_2122 PF00109 Beta-ketoacyl synthase, N-terminal domain CH60_2122 PF02801 Beta-ketoacyl synthase, C-terminal domain CH60_2122 PF08240 Alcohol dehydrogenase GroES-like domain CH60_2122 PF00550 Phosphopantetheine attachment site CH60_2122 PF00698 Acyl transferase domain CH60_2122 PF14765 Polyketide synthase dehydratase CH60_2123 PF10777 Inner membrane protein YlaC CH60_2124 PF01037 Lrp/AsnC ligand binding domain CH60_2124 PF13404 AsnC-type helix-turn-helix domain CH60_2126 PF14001 YdfZ protein CH60_2127 PF00328 Histidine phosphatase superfamily (branch 2) CH60_2129 PF01638 HxlR-like helix-turn-helix CH60_213 PF12221 Bacterial membrane protein N terminal CH60_213 PF01145 SPFH domain / Band 7 family CH60_2130 PF05368 NmrA-like family CH60_2131 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH60_2131 PF08447 PAS fold CH60_2133 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH60_2133 PF00356 Bacterial regulatory proteins, lacI family CH60_2134 PF00180 Isocitrate/isopropylmalate dehydrogenase CH60_2135 PF00849 RNA pseudouridylate synthase CH60_2136 PF00293 NUDIX domain CH60_2138 PF04356 Protein of unknown function (DUF489) CH60_2139 PF08328 Adenylosuccinate lyase C-terminal CH60_2139 PF00206 Lyase CH60_214 PF13167 GTP-binding GTPase N-terminal CH60_214 PF16360 GTP-binding GTPase Middle Region CH60_214 PF01926 50S ribosome-binding GTPase CH60_2141 PF00486 Transcriptional regulatory protein, C terminal CH60_2141 PF00072 Response regulator receiver domain CH60_2142 PF08918 PhoQ Sensor CH60_2142 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_2143 PF08007 Cupin superfamily protein CH60_2144 PF07687 Peptidase dimerisation domain CH60_2144 PF01546 Peptidase family M20/M25/M40 CH60_2145 PF02146 Sir2 family CH60_2146 PF00480 ROK family CH60_2147 PF02687 FtsX-like permease family CH60_2147 PF12704 MacB-like periplasmic core domain CH60_2148 PF00005 ABC transporter CH60_2149 PF12704 MacB-like periplasmic core domain CH60_2149 PF02687 FtsX-like permease family CH60_215 PF17209 Hfq protein CH60_2150 PF00271 Helicase conserved C-terminal domain CH60_2150 PF03461 TRCF domain CH60_2150 PF00270 DEAD/DEAH box helicase CH60_2150 PF02559 CarD-like/TRCF domain CH60_2150 PF17757 UvrB interaction domain CH60_2151 PF05433 Glycine zipper 2TM domain CH60_2152 PF00872 Transposase, Mutator family CH60_2153 PF00872 Transposase, Mutator family CH60_2156 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH60_2157 PF05728 Uncharacterised protein family (UPF0227) CH60_2158 PF00933 Glycosyl hydrolase family 3 N terminal domain CH60_2159 PF01636 Phosphotransferase enzyme family CH60_2160 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH60_2160 PF13036 Peptidoglycan-synthase activator LpoB CH60_2161 PF07233 Protein of unknown function (DUF1425) CH60_2162 PF01230 HIT domain CH60_2163 PF08501 Shikimate dehydrogenase substrate binding domain CH60_2164 PF01797 Transposase IS200 like CH60_2165 PF00367 phosphotransferase system, EIIB CH60_2165 PF02378 Phosphotransferase system, EIIC CH60_2166 PF01026 TatD related DNase CH60_2167 PF09115 DNA polymerase III, delta subunit, C terminal CH60_2168 PF02223 Thymidylate kinase CH60_2169 PF02618 YceG-like family CH60_217 PF08676 MutL C terminal dimerisation domain CH60_217 PF01119 DNA mismatch repair protein, C-terminal domain CH60_2170 PF01063 Amino-transferase class IV CH60_2171 PF01797 Transposase IS200 like CH60_2172 PF02801 Beta-ketoacyl synthase, C-terminal domain CH60_2172 PF00109 Beta-ketoacyl synthase, N-terminal domain CH60_2173 PF00550 Phosphopantetheine attachment site CH60_2175 PF00698 Acyl transferase domain CH60_2176 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH60_2176 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH60_2177 PF02504 Fatty acid synthesis protein CH60_2178 PF01783 Ribosomal L32p protein family CH60_2179 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH60_218 PF01520 N-acetylmuramoyl-L-alanine amidase CH60_2180 PF02545 Maf-like protein CH60_2181 PF01479 S4 domain CH60_2181 PF00849 RNA pseudouridylate synthase CH60_2182 PF12111 Polyribonucleotide phosphorylase C terminal CH60_2182 PF00575 S1 RNA binding domain CH60_2182 PF10150 Ribonuclease E/G family CH60_2183 PF03992 Antibiotic biosynthesis monooxygenase CH60_2184 PF01979 Amidohydrolase family CH60_2185 PF06183 DinI-like family CH60_2186 PF00872 Transposase, Mutator family CH60_2187 PF13991 BssS protein family CH60_2188 PF01266 FAD dependent oxidoreductase CH60_2189 PF00196 Bacterial regulatory proteins, luxR family CH60_219 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH60_2190 PF01594 AI-2E family transporter CH60_2194 PF00196 Bacterial regulatory proteins, luxR family CH60_2194 PF03472 Autoinducer binding domain CH60_2195 PF00765 Autoinducer synthase CH60_2196 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_2196 PF03466 LysR substrate binding domain CH60_2198 PF00083 Sugar (and other) transporter CH60_22 PF02447 GntP family permease CH60_220 PF01256 Carbohydrate kinase CH60_220 PF03853 YjeF-related protein N-terminus CH60_2200 PF00248 Aldo/keto reductase family CH60_2201 PF09618 CRISPR-associated protein (Cas_Csy4) CH60_2202 PF09615 CRISPR-associated protein (Cas_Csy3) CH60_2203 PF09614 CRISPR-associated protein (Cas_Csy2) CH60_2204 PF09611 CRISPR-associated protein (Cas_Csy1) CH60_2206 PF01867 CRISPR associated protein Cas1 CH60_2207 PF00924 Mechanosensitive ion channel CH60_221 PF08331 Domain of unknown function (DUF1730) CH60_2211 PF04041 beta-1,4-mannooligosaccharide phosphorylase CH60_2212 PF00528 Binding-protein-dependent transport system inner membrane component CH60_2213 PF00528 Binding-protein-dependent transport system inner membrane component CH60_2215 PF00356 Bacterial regulatory proteins, lacI family CH60_2216 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH60_2216 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH60_2216 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH60_2216 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH60_2217 PF01797 Transposase IS200 like CH60_2218 PF00005 ABC transporter CH60_2218 PF17912 MalK OB fold domain CH60_2220 PF15526 Novel toxin 21 CH60_2220 PF05860 haemagglutination activity domain CH60_2220 PF04829 Pre-toxin domain with VENN motif CH60_2220 PF05594 Haemagluttinin repeat CH60_2220 PF13332 Hemagglutinin repeat CH60_2224 PF04829 Pre-toxin domain with VENN motif CH60_2224 PF05860 haemagglutination activity domain CH60_2224 PF13018 Extended Signal Peptide of Type V secretion system CH60_2224 PF13332 Hemagglutinin repeat CH60_2225 PF08479 POTRA domain, ShlB-type CH60_2225 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH60_2225 PF17287 POTRA domain CH60_2226 PF00111 2Fe-2S iron-sulfur cluster binding domain CH60_2226 PF00175 Oxidoreductase NAD-binding domain CH60_2226 PF00970 Oxidoreductase FAD-binding domain CH60_2227 PF00355 Rieske [2Fe-2S] domain CH60_2227 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CH60_2228 PF02028 BCCT, betaine/carnitine/choline family transporter CH60_2229 PF00180 Isocitrate/isopropylmalate dehydrogenase CH60_2230 PF03466 LysR substrate binding domain CH60_2230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_2231 PF00356 Bacterial regulatory proteins, lacI family CH60_2232 PF02653 Branched-chain amino acid transport system / permease component CH60_2233 PF00005 ABC transporter CH60_2234 PF13407 Periplasmic binding protein domain CH60_2235 PF08240 Alcohol dehydrogenase GroES-like domain CH60_2235 PF00107 Zinc-binding dehydrogenase CH60_2239 PF13505 Outer membrane protein beta-barrel domain CH60_2240 PF00892 EamA-like transporter family CH60_2242 PF13649 Methyltransferase domain CH60_2243 PF00210 Ferritin-like domain CH60_2245 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH60_2246 PF00528 Binding-protein-dependent transport system inner membrane component CH60_2247 PF00005 ABC transporter CH60_2248 PF08447 PAS fold CH60_2248 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH60_2248 PF13426 PAS domain CH60_2249 PF05971 RNA methyltransferase CH60_225 PF00929 Exonuclease CH60_2250 PF07338 Protein of unknown function (DUF1471) CH60_2251 PF02885 Glycosyl transferase family, helical bundle domain CH60_2252 PF13193 AMP-binding enzyme C-terminal domain CH60_2252 PF00501 AMP-binding enzyme CH60_2253 PF13378 Enolase C-terminal domain-like CH60_2254 PF00378 Enoyl-CoA hydratase/isomerase CH60_2255 PF12697 Alpha/beta hydrolase family CH60_2256 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH60_2256 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH60_2256 PF16582 Middle domain of thiamine pyrophosphate CH60_2257 PF00425 chorismate binding enzyme CH60_2259 PF05957 Bacterial protein of unknown function (DUF883) CH60_226 PF03193 RsgA GTPase CH60_2261 PF00920 Dehydratase family CH60_2264 PF07690 Major Facilitator Superfamily CH60_2265 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH60_2265 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH60_2266 PF00356 Bacterial regulatory proteins, lacI family CH60_2268 PF00106 short chain dehydrogenase CH60_2269 PF01202 Shikimate kinase CH60_227 PF02666 Phosphatidylserine decarboxylase CH60_2270 PF04074 YhcH/YjgK/YiaL CH60_2272 PF00361 Proton-conducting membrane transporter CH60_2273 PF00361 Proton-conducting membrane transporter CH60_2274 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH60_2274 PF00361 Proton-conducting membrane transporter CH60_2275 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH60_2276 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH60_2277 PF12838 4Fe-4S dicluster domain CH60_2278 PF00146 NADH dehydrogenase CH60_2279 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH60_2279 PF01568 Molydopterin dinucleotide binding domain CH60_2279 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH60_2279 PF00384 Molybdopterin oxidoreductase CH60_228 PF12795 Mechanosensitive ion channel porin domain CH60_228 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH60_228 PF00924 Mechanosensitive ion channel CH60_2280 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH60_2280 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH60_2280 PF10531 SLBB domain CH60_2282 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH60_2282 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH60_2283 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH60_2284 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH60_2285 PF03466 LysR substrate binding domain CH60_2285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_2286 PF00155 Aminotransferase class I and II CH60_2288 PF03600 Citrate transporter CH60_2288 PF02080 TrkA-C domain CH60_2289 PF13419 Haloacid dehalogenase-like hydrolase CH60_229 PF00152 tRNA synthetases class II (D, K and N) CH60_2290 PF03887 YfbU domain CH60_2291 PF04217 Protein of unknown function, DUF412 CH60_2292 PF00871 Acetokinase family CH60_2293 PF01515 Phosphate acetyl/butaryl transferase CH60_2293 PF07085 DRTGG domain CH60_2294 PF00356 Bacterial regulatory proteins, lacI family CH60_2294 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH60_2295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH60_2297 PF00872 Transposase, Mutator family CH60_2298 PF03611 PTS system sugar-specific permease component CH60_23 PF02595 Glycerate kinase family CH60_230 PF02910 Fumarate reductase flavoprotein C-term CH60_230 PF00890 FAD binding domain CH60_2302 PF00293 NUDIX domain CH60_2303 PF12850 Calcineurin-like phosphoesterase superfamily domain CH60_2305 PF01370 NAD dependent epimerase/dehydratase family CH60_2305 PF08338 Domain of unknown function (DUF1731) CH60_2306 PF00005 ABC transporter CH60_2307 PF00528 Binding-protein-dependent transport system inner membrane component CH60_2308 PF00528 Binding-protein-dependent transport system inner membrane component CH60_2309 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH60_231 PF13085 2Fe-2S iron-sulfur cluster binding domain CH60_231 PF13183 4Fe-4S dicluster domain CH60_2310 PF02441 Flavoprotein CH60_2311 PF00156 Phosphoribosyl transferase domain CH60_2312 PF02674 Colicin V production protein CH60_2313 PF05036 Sporulation related domain CH60_2314 PF08245 Mur ligase middle domain CH60_2314 PF02875 Mur ligase family, glutamate ligase domain CH60_2315 PF01039 Carboxyl transferase domain CH60_2315 PF17848 Acetyl-coA carboxylase zinc finger domain CH60_2316 PF09335 SNARE associated Golgi protein CH60_2317 PF01416 tRNA pseudouridine synthase CH60_2318 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH60_2318 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH60_2319 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH60_2319 PF11890 Domain of unknown function (DUF3410) CH60_2319 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH60_232 PF02300 Fumarate reductase subunit C CH60_2321 PF00892 EamA-like transporter family CH60_2323 PF00419 Fimbrial protein CH60_2324 PF01177 Asp/Glu/Hydantoin racemase CH60_2325 PF02801 Beta-ketoacyl synthase, C-terminal domain CH60_2325 PF00109 Beta-ketoacyl synthase, N-terminal domain CH60_2326 PF01266 FAD dependent oxidoreductase CH60_2326 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH60_2327 PF08891 YfcL protein CH60_2328 PF04315 Elongation factor P hydroxylase CH60_2329 PF01925 Sulfite exporter TauE/SafE CH60_233 PF02313 Fumarate reductase subunit D CH60_2330 PF03411 Penicillin-insensitive murein endopeptidase CH60_2331 PF01264 Chorismate synthase CH60_2332 PF05175 Methyltransferase small domain CH60_2333 PF01713 Smr domain CH60_2334 PF00300 Histidine phosphatase superfamily (branch 1) CH60_2335 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH60_2335 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH60_2335 PF00378 Enoyl-CoA hydratase/isomerase CH60_2336 PF00108 Thiolase, N-terminal domain CH60_2336 PF02803 Thiolase, C-terminal domain CH60_2337 PF04175 Protein of unknown function (DUF406) CH60_2338 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH60_2339 PF04333 MlaA lipoprotein CH60_234 PF00893 Small Multidrug Resistance protein CH60_2340 PF03918 Cytochrome C biogenesis protein CH60_2341 PF03918 Cytochrome C biogenesis protein CH60_2342 PF08534 Redoxin CH60_2343 PF01578 Cytochrome C assembly protein CH60_2343 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH60_2344 PF03100 CcmE CH60_2345 PF04995 Heme exporter protein D (CcmD) CH60_2346 PF01578 Cytochrome C assembly protein CH60_2347 PF03379 CcmB protein CH60_2348 PF00005 ABC transporter CH60_235 PF09285 Elongation factor P, C-terminal CH60_235 PF08207 Elongation factor P (EF-P) KOW-like domain CH60_235 PF01132 Elongation factor P (EF-P) OB domain CH60_2351 PF04011 LemA family CH60_2353 PF03831 PhnA domain CH60_2353 PF08274 PhnA Zinc-Ribbon CH60_2354 PF00872 Transposase, Mutator family CH60_2355 PF07883 Cupin domain CH60_2356 PF04962 KduI/IolB family CH60_2358 PF06917 Periplasmic pectate lyase CH60_2359 PF00528 Binding-protein-dependent transport system inner membrane component CH60_236 PF04055 Radical SAM superfamily CH60_2362 PF00005 ABC transporter CH60_2362 PF17912 MalK OB fold domain CH60_2362 PF03459 TOBE domain CH60_2363 PF01547 Bacterial extracellular solute-binding protein CH60_2364 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH60_2365 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH60_2367 PF01510 N-acetylmuramoyl-L-alanine amidase CH60_2368 PF01614 Bacterial transcriptional regulator CH60_2368 PF09339 IclR helix-turn-helix domain CH60_2369 PF14583 Oligogalacturonate lyase CH60_237 PF13698 Domain of unknown function (DUF4156) CH60_2370 PF07690 Major Facilitator Superfamily CH60_2371 PF02753 Pili assembly chaperone PapD, C-terminal domain CH60_2371 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH60_2373 PF00577 Outer membrane usher protein CH60_2373 PF13953 PapC C-terminal domain CH60_2373 PF13954 PapC N-terminal domain CH60_2374 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH60_2374 PF02753 Pili assembly chaperone PapD, C-terminal domain CH60_2375 PF00419 Fimbrial protein CH60_2376 PF01435 Peptidase family M48 CH60_2378 PF11818 C-terminal domain of tail specific protease (DUF3340) CH60_2378 PF00595 PDZ domain CH60_2378 PF03572 Peptidase family S41 CH60_2378 PF17804 Tail specific protease N-terminal domain CH60_2379 PF04352 ProQ/FINO family CH60_2379 PF17516 ProQ C-terminal domain CH60_238 PF00118 TCP-1/cpn60 chaperonin family CH60_2380 PF13185 GAF domain CH60_2381 PF04403 Paraquat-inducible protein A CH60_2382 PF02470 MlaD protein CH60_2386 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH60_2386 PF02753 Pili assembly chaperone PapD, C-terminal domain CH60_2389 PF07351 Protein of unknown function (DUF1480) CH60_239 PF00166 Chaperonin 10 Kd subunit CH60_2391 PF00665 Integrase core domain CH60_2391 PF02796 Helix-turn-helix domain of resolvase CH60_2394 PF01695 IstB-like ATP binding protein CH60_2395 PF00392 Bacterial regulatory proteins, gntR family CH60_2395 PF07702 UTRA domain CH60_2396 PF01979 Amidohydrolase family CH60_2398 PF00267 Gram-negative porin CH60_2399 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CH60_240 PF04186 FxsA cytoplasmic membrane protein CH60_2400 PF04996 Succinylarginine dihydrolase CH60_2401 PF00171 Aldehyde dehydrogenase family CH60_2402 PF04958 Arginine N-succinyltransferase beta subunit CH60_2403 PF00202 Aminotransferase class-III CH60_2406 PF00392 Bacterial regulatory proteins, gntR family CH60_2406 PF00155 Aminotransferase class I and II CH60_2407 PF07730 Histidine kinase CH60_2407 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CH60_2407 PF00672 HAMP domain CH60_2407 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_2408 PF01699 Sodium/calcium exchanger protein CH60_2409 PF02562 PhoH-like protein CH60_241 PF10415 Fumarase C C-terminus CH60_241 PF00206 Lyase CH60_2412 PF13994 PgaD-like protein CH60_2413 PF00535 Glycosyl transferase family 2 CH60_2414 PF14883 Hypothetical glycosyl hydrolase family 13 CH60_2414 PF01522 Polysaccharide deacetylase CH60_2416 PF00557 Metallopeptidase family M24 CH60_2417 PF03848 Tellurite resistance protein TehB CH60_2417 PF09313 Domain of unknown function (DUF1971) CH60_2419 PF00578 AhpC/TSA family CH60_242 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH60_2420 PF02687 FtsX-like permease family CH60_2420 PF12704 MacB-like periplasmic core domain CH60_2420 PF00005 ABC transporter CH60_2422 PF12704 MacB-like periplasmic core domain CH60_2422 PF02687 FtsX-like permease family CH60_2422 PF00005 ABC transporter CH60_2424 PF10634 Fe2+ transport protein CH60_2425 PF03239 Iron permease FTR1 family CH60_2427 PF04960 Glutaminase CH60_2428 PF08220 DeoR-like helix-turn-helix domain CH60_2428 PF00455 DeoR C terminal sensor domain CH60_2429 PF00324 Amino acid permease CH60_243 PF03091 CutA1 divalent ion tolerance protein CH60_2430 PF00155 Aminotransferase class I and II CH60_2431 PF02508 Rnf-Nqr subunit, membrane protein CH60_2433 PF04909 Amidohydrolase CH60_2437 PF03466 LysR substrate binding domain CH60_2437 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_2438 PF03328 HpcH/HpaI aldolase/citrate lyase family CH60_2439 PF01575 MaoC like domain CH60_244 PF11412 Disulphide bond corrector protein DsbC CH60_244 PF02683 Cytochrome C biogenesis protein transmembrane region CH60_2440 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CH60_2440 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CH60_2442 PF00196 Bacterial regulatory proteins, luxR family CH60_2442 PF00072 Response regulator receiver domain CH60_2446 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH60_2446 PF02753 Pili assembly chaperone PapD, C-terminal domain CH60_2447 PF13953 PapC C-terminal domain CH60_2447 PF13954 PapC N-terminal domain CH60_2447 PF00577 Outer membrane usher protein CH60_2449 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH60_2449 PF02753 Pili assembly chaperone PapD, C-terminal domain CH60_245 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH60_245 PF00384 Molybdopterin oxidoreductase CH60_245 PF01568 Molydopterin dinucleotide binding domain CH60_2451 PF13356 Arm DNA-binding domain CH60_2451 PF00589 Phage integrase family CH60_2452 PF00425 chorismate binding enzyme CH60_2453 PF07690 Major Facilitator Superfamily CH60_2454 PF00005 ABC transporter CH60_2454 PF00664 ABC transporter transmembrane region CH60_2455 PF04954 Siderophore-interacting protein CH60_2455 PF08021 Siderophore-interacting FAD-binding domain CH60_2455 PF00005 ABC transporter CH60_2455 PF00664 ABC transporter transmembrane region CH60_2457 PF00550 Phosphopantetheine attachment site CH60_2457 PF00501 AMP-binding enzyme CH60_2457 PF00668 Condensation domain CH60_2457 PF08242 Methyltransferase domain CH60_2458 PF00668 Condensation domain CH60_2458 PF00698 Acyl transferase domain CH60_2458 PF16197 Ketoacyl-synthetase C-terminal extension CH60_2458 PF00109 Beta-ketoacyl synthase, N-terminal domain CH60_2458 PF00550 Phosphopantetheine attachment site CH60_2458 PF02801 Beta-ketoacyl synthase, C-terminal domain CH60_246 PF13247 4Fe-4S dicluster domain CH60_246 PF12800 4Fe-4S binding domain CH60_2460 PF00975 Thioesterase domain CH60_2461 PF13193 AMP-binding enzyme C-terminal domain CH60_2461 PF00501 AMP-binding enzyme CH60_2462 PF00593 TonB dependent receptor CH60_2462 PF07715 TonB-dependent Receptor Plug Domain CH60_247 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH60_247 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH60_247 PF13247 4Fe-4S dicluster domain CH60_2470 PF01695 IstB-like ATP binding protein CH60_2471 PF01695 IstB-like ATP binding protein CH60_2473 PF02796 Helix-turn-helix domain of resolvase CH60_2473 PF00665 Integrase core domain CH60_2474 PF02796 Helix-turn-helix domain of resolvase CH60_2474 PF00665 Integrase core domain CH60_2475 PF02801 Beta-ketoacyl synthase, C-terminal domain CH60_2475 PF00109 Beta-ketoacyl synthase, N-terminal domain CH60_2477 PF07977 FabA-like domain CH60_2478 PF05362 Lon protease (S16) C-terminal proteolytic domain CH60_2478 PF13654 AAA domain CH60_2479 PF06303 MatP N-terminal domain CH60_2479 PF17414 MatP C-terminal ribbon-helix-helix domain CH60_2480 PF01797 Transposase IS200 like CH60_2481 PF04245 37-kD nucleoid-associated bacterial protein CH60_2482 PF07208 Protein of unknown function (DUF1414) CH60_2483 PF00884 Sulfatase CH60_2483 PF11893 Domain of unknown function (DUF3413) CH60_2486 PF05638 Type VI secretion system effector, Hcp CH60_2490 PF00872 Transposase, Mutator family CH60_2491 PF00872 Transposase, Mutator family CH60_2492 PF00271 Helicase conserved C-terminal domain CH60_2492 PF00270 DEAD/DEAH box helicase CH60_2493 PF01797 Transposase IS200 like CH60_2495 PF01207 Dihydrouridine synthase (Dus) CH60_2497 PF00768 D-alanyl-D-alanine carboxypeptidase CH60_2498 PF01565 FAD binding domain CH60_2498 PF09330 D-lactate dehydrogenase, membrane binding CH60_2499 PF01928 CYTH domain CH60_2500 PF01844 HNH endonuclease CH60_2502 PF04226 Transglycosylase associated protein CH60_2503 PF00005 ABC transporter CH60_2505 PF00528 Binding-protein-dependent transport system inner membrane component CH60_2506 PF00528 Binding-protein-dependent transport system inner membrane component CH60_2507 PF07308 Protein of unknown function (DUF1456) CH60_2508 PF00158 Sigma-54 interaction domain CH60_2508 PF13188 PAS domain CH60_2508 PF02954 Bacterial regulatory protein, Fis family CH60_2509 PF02653 Branched-chain amino acid transport system / permease component CH60_2510 PF02653 Branched-chain amino acid transport system / permease component CH60_2511 PF00005 ABC transporter CH60_2512 PF00005 ABC transporter CH60_2515 PF00581 Rhodanese-like domain CH60_2518 PF00528 Binding-protein-dependent transport system inner membrane component CH60_2519 PF00005 ABC transporter CH60_2520 PF00528 Binding-protein-dependent transport system inner membrane component CH60_2521 PF13520 Amino acid permease CH60_2522 PF01276 Orn/Lys/Arg decarboxylase, major domain CH60_2522 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH60_2522 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH60_2524 PF00892 EamA-like transporter family CH60_2525 PF00267 Gram-negative porin CH60_2526 PF06733 DEAD_2 CH60_2526 PF13307 Helicase C-terminal domain CH60_2527 PF06628 Catalase-related immune-responsive CH60_2527 PF00199 Catalase CH60_2528 PF07437 YfaZ precursor CH60_2529 PF03222 Tryptophan/tyrosine permease family CH60_2530 PF00994 Probable molybdopterin binding domain CH60_2531 PF03974 Ecotin CH60_2532 PF00111 2Fe-2S iron-sulfur cluster binding domain CH60_2533 PF00268 Ribonucleotide reductase, small chain CH60_2534 PF03477 ATP cone domain CH60_2534 PF00317 Ribonucleotide reductase, all-alpha domain CH60_2534 PF02867 Ribonucleotide reductase, barrel domain CH60_2536 PF00521 DNA gyrase/topoisomerase IV, subunit A CH60_2536 PF03989 DNA gyrase C-terminal domain, beta-propeller CH60_2537 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_2537 PF00072 Response regulator receiver domain CH60_2537 PF09456 RcsC Alpha-Beta-Loop (ABL) CH60_2537 PF00512 His Kinase A (phospho-acceptor) domain CH60_2538 PF00196 Bacterial regulatory proteins, luxR family CH60_2538 PF00072 Response regulator receiver domain CH60_2539 PF16359 RcsD-ABL domain CH60_2539 PF01627 Hpt domain CH60_2539 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_2540 PF16359 RcsD-ABL domain CH60_2540 PF01627 Hpt domain CH60_2540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_2541 PF07690 Major Facilitator Superfamily CH60_2543 PF00267 Gram-negative porin CH60_2546 PF00144 Beta-lactamase CH60_2548 PF12706 Beta-lactamase superfamily domain CH60_2549 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH60_2549 PF00672 HAMP domain CH60_2549 PF02743 Cache domain CH60_255 PF06379 L-rhamnose-proton symport protein (RhaT) CH60_2550 PF01278 Omptin family CH60_2551 PF06183 DinI-like family CH60_2552 PF01381 Helix-turn-helix CH60_2552 PF00717 Peptidase S24-like CH60_2553 PF06530 Phage antitermination protein Q CH60_2554 PF17042 Nucleotide-binding C-terminal domain CH60_2554 PF07005 Sugar-binding N-terminal domain CH60_2555 PF00596 Class II Aldolase and Adducin N-terminal domain CH60_2556 PF08220 DeoR-like helix-turn-helix domain CH60_2556 PF00455 DeoR C terminal sensor domain CH60_2557 PF01261 Xylose isomerase-like TIM barrel CH60_256 PF12833 Helix-turn-helix domain CH60_256 PF02311 AraC-like ligand binding domain CH60_2561 PF17482 Phage tail sheath C-terminal domain CH60_2561 PF04984 Phage tail sheath protein subtilisin-like domain CH60_2569 PF04865 Baseplate J-like protein CH60_257 PF02311 AraC-like ligand binding domain CH60_257 PF12833 Helix-turn-helix domain CH60_2572 PF07484 Phage Tail Collar Domain CH60_2573 PF01418 Helix-turn-helix domain, rpiR family CH60_2573 PF01380 SIS domain CH60_2575 PF00232 Glycosyl hydrolase family 1 CH60_2576 PF00872 Transposase, Mutator family CH60_2581 PF02371 Transposase IS116/IS110/IS902 family CH60_2581 PF01548 Transposase CH60_2582 PF00270 DEAD/DEAH box helicase CH60_2582 PF00271 Helicase conserved C-terminal domain CH60_2583 PF09209 Tetracyclin repressor-like, C-terminal domain CH60_2583 PF00440 Bacterial regulatory proteins, tetR family CH60_2584 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH60_2585 PF00005 ABC transporter CH60_2589 PF03466 LysR substrate binding domain CH60_2589 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_2590 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH60_2591 PF00072 Response regulator receiver domain CH60_2591 PF00158 Sigma-54 interaction domain CH60_2591 PF02954 Bacterial regulatory protein, Fis family CH60_2592 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_2592 PF00512 His Kinase A (phospho-acceptor) domain CH60_2593 PF13801 Heavy-metal resistance CH60_2594 PF03825 Nucleoside H+ symporter CH60_2595 PF01797 Transposase IS200 like CH60_2596 PF03825 Nucleoside H+ symporter CH60_2597 PF01048 Phosphorylase superfamily CH60_2599 PF03466 LysR substrate binding domain CH60_2599 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_260 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH60_260 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH60_2600 PF02028 BCCT, betaine/carnitine/choline family transporter CH60_2601 PF13977 BetI-type transcriptional repressor, C-terminal CH60_2601 PF00440 Bacterial regulatory proteins, tetR family CH60_2602 PF00171 Aldehyde dehydrogenase family CH60_2603 PF00732 GMC oxidoreductase CH60_2603 PF05199 GMC oxidoreductase CH60_2604 PF01797 Transposase IS200 like CH60_2605 PF01027 Inhibitor of apoptosis-promoting Bax1 CH60_2606 PF02391 MoaE protein CH60_2607 PF02597 ThiS family CH60_2608 PF01967 MoaC family CH60_2609 PF06463 Molybdenum Cofactor Synthesis C CH60_2609 PF04055 Radical SAM superfamily CH60_261 PF06134 L-rhamnose isomerase (RhaA) CH60_2611 PF01933 Uncharacterised protein family UPF0052 CH60_2612 PF01695 IstB-like ATP binding protein CH60_2614 PF02796 Helix-turn-helix domain of resolvase CH60_2614 PF00665 Integrase core domain CH60_2615 PF01933 Uncharacterised protein family UPF0052 CH60_2616 PF09905 DNA-binding protein VF530 CH60_2617 PF00271 Helicase conserved C-terminal domain CH60_2617 PF04851 Type III restriction enzyme, res subunit CH60_2617 PF12344 Ultra-violet resistance protein B CH60_2617 PF17757 UvrB interaction domain CH60_2617 PF02151 UvrB/uvrC motif CH60_262 PF00596 Class II Aldolase and Adducin N-terminal domain CH60_2620 PF08241 Methyltransferase domain CH60_2621 PF00155 Aminotransferase class I and II CH60_2622 PF06968 Biotin and Thiamin Synthesis associated domain CH60_2622 PF04055 Radical SAM superfamily CH60_2623 PF00202 Aminotransferase class-III CH60_2624 PF10282 Lactonase, 7-bladed beta-propeller CH60_2626 PF03459 TOBE domain CH60_2626 PF00005 ABC transporter CH60_2627 PF00528 Binding-protein-dependent transport system inner membrane component CH60_2629 PF10766 Multidrug efflux pump-associated protein AcrZ CH60_263 PF00465 Iron-containing alcohol dehydrogenase CH60_2630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_2630 PF03459 TOBE domain CH60_2631 PF00005 ABC transporter CH60_2634 PF16363 GDP-mannose 4,6 dehydratase CH60_2635 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH60_2635 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH60_2636 PF10509 Galactokinase galactose-binding signature CH60_2636 PF08544 GHMP kinases C terminal CH60_2636 PF00288 GHMP kinases N terminal domain CH60_2638 PF01263 Aldose 1-epimerase CH60_264 PF05336 L-rhamnose mutarotase CH60_2640 PF00300 Histidine phosphatase superfamily (branch 1) CH60_2641 PF00793 DAHP synthetase I family CH60_2643 PF01545 Cation efflux family CH60_2644 PF04973 Nicotinamide mononucleotide transporter CH60_2645 PF02445 Quinolinate synthetase A protein CH60_2649 PF16331 TolA binding protein trimerisation CH60_2649 PF13174 Tetratricopeptide repeat CH60_265 PF00436 Single-strand binding protein family CH60_2650 PF00691 OmpA family CH60_2651 PF07676 WD40-like Beta Propeller Repeat CH60_2651 PF04052 TolB amino-terminal domain CH60_2652 PF06519 TolA C-terminal CH60_2652 PF06519 TolA C-terminal CH60_2653 PF02472 Biopolymer transport protein ExbD/TolR CH60_2654 PF01618 MotA/TolQ/ExbB proton channel family CH60_2655 PF03061 Thioesterase superfamily CH60_2656 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CH60_2657 PF08173 Membrane bound YbgT-like protein CH60_2658 PF02322 Cytochrome bd terminal oxidase subunit II CH60_2659 PF01654 Cytochrome bd terminal oxidase subunit I CH60_266 PF17755 UvrA DNA-binding domain CH60_266 PF17760 UvrA interaction domain CH60_266 PF00005 ABC transporter CH60_2660 PF01797 Transposase IS200 like CH60_2661 PF02629 CoA binding domain CH60_2661 PF00549 CoA-ligase CH60_2662 PF00549 CoA-ligase CH60_2662 PF08442 ATP-grasp domain CH60_2663 PF00364 Biotin-requiring enzyme CH60_2663 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH60_2663 PF02817 e3 binding domain CH60_2664 PF02779 Transketolase, pyrimidine binding domain CH60_2664 PF00676 Dehydrogenase E1 component CH60_2664 PF16870 2-oxoglutarate dehydrogenase C-terminal CH60_2664 PF16078 2-oxoglutarate dehydrogenase N-terminus CH60_2665 PF13085 2Fe-2S iron-sulfur cluster binding domain CH60_2666 PF00890 FAD binding domain CH60_2666 PF02910 Fumarate reductase flavoprotein C-term CH60_2667 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH60_2668 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH60_2669 PF00285 Citrate synthase, C-terminal domain CH60_267 PF04237 YjbR CH60_2670 PF01025 GrpE CH60_2671 PF01513 ATP-NAD kinase CH60_2672 PF02463 RecF/RecN/SMC N terminal domain CH60_2673 PF04355 SmpA / OmlA family CH60_2674 PF03658 RnfH family Ubiquitin CH60_2675 PF03364 Polyketide cyclase / dehydrase and lipid transport CH60_2676 PF01668 SmpB protein CH60_2677 PF01797 Transposase IS200 like CH60_2678 PF00589 Phage integrase family CH60_2678 PF13356 Arm DNA-binding domain CH60_268 PF00155 Aminotransferase class I and II CH60_2688 PF05973 Phage derived protein Gp49-like (DUF891) CH60_269 PF01168 Alanine racemase, N-terminal domain CH60_269 PF00842 Alanine racemase, C-terminal domain CH60_2690 PF02796 Helix-turn-helix domain of resolvase CH60_2690 PF00665 Integrase core domain CH60_2691 PF01695 IstB-like ATP binding protein CH60_2692 PF00990 Diguanylate cyclase, GGDEF domain CH60_2692 PF00563 EAL domain CH60_2692 PF08447 PAS fold CH60_2692 PF08448 PAS fold CH60_2692 PF13426 PAS domain CH60_2692 PF05231 MASE1 CH60_2694 PF13847 Methyltransferase domain CH60_2696 PF00313 'Cold-shock' DNA-binding domain CH60_2698 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH60_2699 PF00324 Amino acid permease CH60_270 PF03796 DnaB-like helicase C terminal domain CH60_270 PF00772 DnaB-like helicase N terminal domain CH60_2702 PF13974 YebO-like protein CH60_2703 PF13996 YobH-like protein CH60_2704 PF10964 Protein of unknown function (DUF2766) CH60_2706 PF12833 Helix-turn-helix domain CH60_2708 PF00005 ABC transporter CH60_2708 PF00664 ABC transporter transmembrane region CH60_271 PF00107 Zinc-binding dehydrogenase CH60_271 PF08240 Alcohol dehydrogenase GroES-like domain CH60_2711 PF06167 Glucose-regulated metallo-peptidase M90 CH60_2713 PF00356 Bacterial regulatory proteins, lacI family CH60_2713 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH60_2714 PF01306 LacY proton/sugar symporter CH60_2715 PF16875 Glycosyl hydrolase family 36 N-terminal domain CH60_2715 PF16874 Glycosyl hydrolase family 36 C-terminal domain CH60_2718 PF01648 4'-phosphopantetheinyl transferase superfamily CH60_2718 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH60_2719 PF03480 Bacterial extracellular solute-binding protein, family 7 CH60_272 PF09583 Phage shock protein G (Phageshock_PspG) CH60_2721 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH60_2722 PF00072 Response regulator receiver domain CH60_2722 PF00196 Bacterial regulatory proteins, luxR family CH60_2724 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CH60_2726 PF01522 Polysaccharide deacetylase CH60_2728 PF01554 MatE CH60_2729 PF00764 Arginosuccinate synthase CH60_273 PF01207 Dihydrouridine synthase (Dus) CH60_2730 PF01070 FMN-dependent dehydrogenase CH60_2732 PF13378 Enolase C-terminal domain-like CH60_2732 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH60_2733 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH60_2735 PF04134 Protein of unknown function, DUF393 CH60_2736 PF07690 Major Facilitator Superfamily CH60_2737 PF02369 Bacterial Ig-like domain (group 1) CH60_2737 PF11924 Inverse autotransporter, beta-domain CH60_2737 PF09134 Invasin, domain 3 CH60_2739 PF04363 Protein of unknown function (DUF496) CH60_274 PF01475 Ferric uptake regulator family CH60_2741 PF08411 Exonuclease C-terminal CH60_2741 PF00929 Exonuclease CH60_2742 PF13520 Amino acid permease CH60_2744 PF00465 Iron-containing alcohol dehydrogenase CH60_2745 PF00005 ABC transporter CH60_2746 PF00005 ABC transporter CH60_275 PF00717 Peptidase S24-like CH60_275 PF01726 LexA DNA binding domain CH60_2750 PF01370 NAD dependent epimerase/dehydratase family CH60_2751 PF08029 HisG, C-terminal domain CH60_2751 PF01634 ATP phosphoribosyltransferase CH60_2752 PF00815 Histidinol dehydrogenase CH60_2753 PF00155 Aminotransferase class I and II CH60_2754 PF00475 Imidazoleglycerol-phosphate dehydratase CH60_2755 PF00117 Glutamine amidotransferase class-I CH60_2756 PF00977 Histidine biosynthesis protein CH60_2757 PF00977 Histidine biosynthesis protein CH60_2758 PF01502 Phosphoribosyl-AMP cyclohydrolase CH60_2758 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH60_2759 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH60_2759 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH60_276 PF01219 Prokaryotic diacylglycerol kinase CH60_2760 PF00483 Nucleotidyl transferase CH60_2761 PF00483 Nucleotidyl transferase CH60_2762 PF04183 IucA / IucC family CH60_2762 PF06276 Ferric iron reductase FhuF-like transporter CH60_2763 PF07715 TonB-dependent Receptor Plug Domain CH60_2763 PF07660 Secretin and TonB N terminus short domain CH60_2763 PF00593 TonB dependent receptor CH60_2764 PF01497 Periplasmic binding protein CH60_2765 PF01032 FecCD transport family CH60_2766 PF01032 FecCD transport family CH60_2767 PF00005 ABC transporter CH60_2768 PF04183 IucA / IucC family CH60_2768 PF06276 Ferric iron reductase FhuF-like transporter CH60_277 PF01553 Acyltransferase CH60_2770 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH60_2771 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH60_2772 PF11575 FhuF 2Fe-2S C-terminal domain CH60_2772 PF06276 Ferric iron reductase FhuF-like transporter CH60_2773 PF00571 CBS domain CH60_2773 PF03471 Transporter associated domain CH60_2773 PF03741 Integral membrane protein TerC family CH60_2774 PF05170 AsmA family CH60_2775 PF00692 dUTPase CH60_2776 PF00485 Phosphoribulokinase / Uridine kinase family CH60_2777 PF10609 NUBPL iron-transfer P-loop NTPase CH60_2778 PF01588 Putative tRNA binding domain CH60_2778 PF09334 tRNA synthetases class I (M) CH60_2779 PF01797 Transposase IS200 like CH60_278 PF01040 UbiA prenyltransferase family CH60_2783 PF07690 Major Facilitator Superfamily CH60_2784 PF03788 LrgA family CH60_2785 PF04172 LrgB-like family CH60_2786 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH60_2786 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH60_2787 PF00390 Malic enzyme, N-terminal domain CH60_2787 PF03949 Malic enzyme, NAD binding domain CH60_2788 PF02698 DUF218 domain CH60_2789 PF02653 Branched-chain amino acid transport system / permease component CH60_279 PF04345 Chorismate lyase CH60_2790 PF00005 ABC transporter CH60_2791 PF13407 Periplasmic binding protein domain CH60_2792 PF04235 Protein of unknown function (DUF418) CH60_2793 PF01227 GTP cyclohydrolase I CH60_2794 PF06779 Uncharacterised MFS-type transporter YbfB CH60_2795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_2795 PF03466 LysR substrate binding domain CH60_2796 PF08240 Alcohol dehydrogenase GroES-like domain CH60_2796 PF00107 Zinc-binding dehydrogenase CH60_2797 PF00756 Putative esterase CH60_28 PF03631 Virulence factor BrkB CH60_280 PF12951 Passenger-associated-transport-repeat CH60_2800 PF13533 Biotin-lipoyl like CH60_2801 PF00005 ABC transporter CH60_2803 PF03454 MoeA C-terminal region (domain IV) CH60_2803 PF03453 MoeA N-terminal region (domain I and II) CH60_2803 PF00994 Probable molybdopterin binding domain CH60_2804 PF00899 ThiF family CH60_2805 PF00872 Transposase, Mutator family CH60_2807 PF00005 ABC transporter CH60_2807 PF12848 ABC transporter CH60_281 PF08031 Berberine and berberine like CH60_281 PF01565 FAD binding domain CH60_2827 PF07724 AAA domain (Cdc48 subfamily) CH60_2827 PF17871 AAA lid domain CH60_2827 PF10431 C-terminal, D2-small domain, of ClpB protein CH60_2827 PF00004 ATPase family associated with various cellular activities (AAA) CH60_2837 PF00698 Acyl transferase domain CH60_2838 PF00550 Phosphopantetheine attachment site CH60_284 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH60_2841 PF00378 Enoyl-CoA hydratase/isomerase CH60_2843 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal CH60_2843 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal CH60_2845 PF00109 Beta-ketoacyl synthase, N-terminal domain CH60_2845 PF02801 Beta-ketoacyl synthase, C-terminal domain CH60_2846 PF07977 FabA-like domain CH60_2849 PF01565 FAD binding domain CH60_2849 PF08031 Berberine and berberine like CH60_285 PF00577 Outer membrane usher protein CH60_285 PF13954 PapC N-terminal domain CH60_285 PF13953 PapC C-terminal domain CH60_2853 PF13610 DDE domain CH60_2855 PF04358 DsrC like protein CH60_2856 PF00708 Acylphosphatase CH60_2857 PF17785 PUA-like domain CH60_2857 PF10672 S-adenosylmethionine-dependent methyltransferase CH60_2858 PF08755 Hemimethylated DNA-binding protein YccV like CH60_2859 PF13380 CoA binding domain CH60_2860 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CH60_2861 PF02142 MGS-like domain CH60_2862 PF12462 DNA helicase IV / RNA helicase N terminal CH60_2862 PF00580 UvrD/REP helicase N-terminal domain CH60_2862 PF13361 UvrD-like helicase C-terminal domain CH60_2863 PF03733 Inner membrane component domain CH60_2864 PF12805 FUSC-like inner membrane protein yccS CH60_2865 PF04993 TfoX N-terminal domain CH60_2865 PF04994 TfoX C-terminal domain CH60_2866 PF03846 Cell division inhibitor SulA CH60_2867 PF01389 OmpA-like transmembrane domain CH60_2867 PF00691 OmpA family CH60_2868 PF01797 Transposase IS200 like CH60_2869 PF01386 Ribosomal L25p family CH60_287 PF02342 TerD domain CH60_2870 PF00271 Helicase conserved C-terminal domain CH60_2870 PF04851 Type III restriction enzyme, res subunit CH60_2871 PF01479 S4 domain CH60_2871 PF00849 RNA pseudouridylate synthase CH60_2872 PF07690 Major Facilitator Superfamily CH60_2873 PF13989 YejG-like protein CH60_2874 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH60_2874 PF00005 ABC transporter CH60_2875 PF00528 Binding-protein-dependent transport system inner membrane component CH60_2875 PF12911 N-terminal TM domain of oligopeptide transport permease C CH60_2876 PF00528 Binding-protein-dependent transport system inner membrane component CH60_2877 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH60_2878 PF00563 EAL domain CH60_2878 PF12792 CSS motif domain associated with EAL CH60_288 PF02342 TerD domain CH60_2880 PF00877 NlpC/P60 family CH60_2881 PF01569 PAP2 superfamily CH60_2882 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH60_2882 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH60_2884 PF00392 Bacterial regulatory proteins, gntR family CH60_2884 PF07729 FCD domain CH60_2885 PF08125 Mannitol dehydrogenase C-terminal domain CH60_2885 PF01232 Mannitol dehydrogenase Rossmann domain CH60_2886 PF03786 D-mannonate dehydratase (UxuA) CH60_2887 PF01132 Elongation factor P (EF-P) OB domain CH60_2887 PF08207 Elongation factor P (EF-P) KOW-like domain CH60_2887 PF09285 Elongation factor P, C-terminal CH60_2888 PF03222 Tryptophan/tyrosine permease family CH60_2889 PF03692 Putative zinc- or iron-chelating domain CH60_289 PF03741 Integral membrane protein TerC family CH60_2891 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH60_2891 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH60_2891 PF01842 ACT domain CH60_2893 PF00171 Aldehyde dehydrogenase family CH60_2894 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH60_2894 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH60_2895 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH60_2897 PF00005 ABC transporter CH60_2898 PF02653 Branched-chain amino acid transport system / permease component CH60_2899 PF00293 NUDIX domain CH60_29 PF05170 AsmA family CH60_290 PF05099 Tellurite resistance protein TerB CH60_2900 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH60_2900 PF00381 PTS HPr component phosphorylation site CH60_2901 PF00294 pfkB family carbohydrate kinase CH60_2902 PF02378 Phosphotransferase system, EIIC CH60_2902 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH60_2903 PF00486 Transcriptional regulatory protein, C terminal CH60_2904 PF17550 Family of unknown function CH60_2906 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH60_2906 PF02753 Pili assembly chaperone PapD, C-terminal domain CH60_2907 PF00577 Outer membrane usher protein CH60_2907 PF13953 PapC C-terminal domain CH60_2907 PF13954 PapC N-terminal domain CH60_2908 PF01261 Xylose isomerase-like TIM barrel CH60_2909 PF01695 IstB-like ATP binding protein CH60_291 PF02342 TerD domain CH60_2910 PF02796 Helix-turn-helix domain of resolvase CH60_2910 PF00665 Integrase core domain CH60_2911 PF13409 Glutathione S-transferase, N-terminal domain CH60_2912 PF07681 DoxX CH60_2914 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CH60_2915 PF05957 Bacterial protein of unknown function (DUF883) CH60_2917 PF13721 SecD export protein N-terminal TM region CH60_2918 PF09335 SNARE associated Golgi protein CH60_292 PF02342 TerD domain CH60_2920 PF00392 Bacterial regulatory proteins, gntR family CH60_2920 PF07729 FCD domain CH60_2921 PF07690 Major Facilitator Superfamily CH60_2922 PF02614 Glucuronate isomerase CH60_2923 PF01232 Mannitol dehydrogenase Rossmann domain CH60_2923 PF08125 Mannitol dehydrogenase C-terminal domain CH60_2924 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH60_2924 PF08666 SAF domain CH60_2925 PF10688 Bacterial inner membrane protein CH60_2926 PF01797 Transposase IS200 like CH60_2928 PF00375 Sodium:dicarboxylate symporter family CH60_2929 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH60_2930 PF01863 Protein of unknown function DUF45 CH60_2933 PF05175 Methyltransferase small domain CH60_2934 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH60_2934 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH60_2935 PF03729 Short repeat of unknown function (DUF308) CH60_2938 PF00092 von Willebrand factor type A domain CH60_2940 PF02342 TerD domain CH60_2941 PF00092 von Willebrand factor type A domain CH60_2942 PF17287 POTRA domain CH60_2942 PF08479 POTRA domain, ShlB-type CH60_2942 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH60_2943 PF05860 haemagglutination activity domain CH60_2943 PF13018 Extended Signal Peptide of Type V secretion system CH60_2943 PF04829 Pre-toxin domain with VENN motif CH60_2943 PF13332 Hemagglutinin repeat CH60_2945 PF05860 haemagglutination activity domain CH60_2945 PF04829 Pre-toxin domain with VENN motif CH60_2945 PF13018 Extended Signal Peptide of Type V secretion system CH60_2945 PF13332 Hemagglutinin repeat CH60_2947 PF05860 haemagglutination activity domain CH60_2947 PF04829 Pre-toxin domain with VENN motif CH60_2947 PF13018 Extended Signal Peptide of Type V secretion system CH60_2947 PF13332 Hemagglutinin repeat CH60_2951 PF00005 ABC transporter CH60_2951 PF17912 MalK OB fold domain CH60_2951 PF03459 TOBE domain CH60_2952 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CH60_2953 PF00356 Bacterial regulatory proteins, lacI family CH60_2954 PF13416 Bacterial extracellular solute-binding protein CH60_2955 PF00528 Binding-protein-dependent transport system inner membrane component CH60_2956 PF00528 Binding-protein-dependent transport system inner membrane component CH60_2958 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH60_2958 PF14310 Fibronectin type III-like domain CH60_2958 PF00933 Glycosyl hydrolase family 3 N terminal domain CH60_296 PF15608 PELOTA RNA binding domain CH60_296 PF11202 Phosphoribosyl transferase (PRTase) CH60_2960 PF04632 Fusaric acid resistance protein family CH60_2961 PF00529 HlyD membrane-fusion protein of T1SS CH60_2961 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH60_2968 PF01042 Endoribonuclease L-PSP CH60_2972 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_2972 PF03466 LysR substrate binding domain CH60_2981 PF00872 Transposase, Mutator family CH60_2985 PF03979 Sigma-70 factor, region 1.1 CH60_2985 PF00140 Sigma-70 factor, region 1.2 CH60_2985 PF04539 Sigma-70 region 3 CH60_2985 PF04545 Sigma-70, region 4 CH60_2985 PF04546 Sigma-70, non-essential region CH60_2985 PF04542 Sigma-70 region 2 CH60_2986 PF08278 DNA primase DnaG DnaB-binding CH60_2986 PF08275 DNA primase catalytic core, N-terminal domain CH60_2986 PF10410 DnaB-helicase binding domain of primase CH60_2986 PF01807 CHC2 zinc finger CH60_2987 PF01165 Ribosomal protein S21 CH60_2988 PF00814 Glycoprotease family CH60_2989 PF02660 Glycerol-3-phosphate acyltransferase CH60_2990 PF02152 Dihydroneopterin aldolase CH60_2991 PF02673 Bacitracin resistance protein BacA CH60_2992 PF12627 Probable RNA and SrmB- binding site of polymerase A CH60_2992 PF01743 Poly A polymerase head domain CH60_2992 PF01966 HD domain CH60_2993 PF08239 Bacterial SH3 domain CH60_2994 PF01928 CYTH domain CH60_2995 PF03710 Glutamate-ammonia ligase adenylyltransferase CH60_2995 PF08335 GlnD PII-uridylyltransferase CH60_2996 PF00294 pfkB family carbohydrate kinase CH60_2996 PF01467 Cytidylyltransferase-like CH60_2997 PF13520 Amino acid permease CH60_2998 PF04380 Membrane fusogenic activity CH60_30 PF02611 CDP-diacylglycerol pyrophosphatase CH60_300 PF04055 Radical SAM superfamily CH60_3000 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH60_3001 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH60_3002 PF03738 Glutathionylspermidine synthase preATP-grasp CH60_3003 PF06693 Protein of unknown function (DUF1190) CH60_3005 PF02321 Outer membrane efflux protein CH60_3006 PF00293 NUDIX domain CH60_3007 PF06853 Protein of unknown function (DUF1249) CH60_3008 PF00149 Calcineurin-like phosphoesterase CH60_3009 PF05728 Uncharacterised protein family (UPF0227) CH60_301 PF06228 Haem utilisation ChuX/HutX CH60_3010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_3010 PF00986 DNA gyrase B subunit, carboxyl terminus CH60_3010 PF00204 DNA gyrase B CH60_3010 PF01751 Toprim domain CH60_3011 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_3011 PF03466 LysR substrate binding domain CH60_3012 PF02525 Flavodoxin-like fold CH60_3013 PF00521 DNA gyrase/topoisomerase IV, subunit A CH60_3013 PF03989 DNA gyrase C-terminal domain, beta-propeller CH60_3014 PF01553 Acyltransferase CH60_3015 PF07732 Multicopper oxidase CH60_3015 PF07731 Multicopper oxidase CH60_3016 PF11842 Domain of unknown function (DUF3362) CH60_3016 PF04055 Radical SAM superfamily CH60_3016 PF08497 Radical SAM N-terminal CH60_3017 PF11842 Domain of unknown function (DUF3362) CH60_3017 PF04055 Radical SAM superfamily CH60_3017 PF08497 Radical SAM N-terminal CH60_3018 PF00248 Aldo/keto reductase family CH60_3019 PF00465 Iron-containing alcohol dehydrogenase CH60_302 PF13460 NAD(P)H-binding CH60_3020 PF12833 Helix-turn-helix domain CH60_3020 PF06719 AraC-type transcriptional regulator N-terminus CH60_3021 PF09335 SNARE associated Golgi protein CH60_3022 PF01053 Cys/Met metabolism PLP-dependent enzyme CH60_3023 PF01618 MotA/TolQ/ExbB proton channel family CH60_3025 PF02472 Biopolymer transport protein ExbD/TolR CH60_303 PF10636 Hemin uptake protein hemP CH60_3032 PF00437 Type II/IV secretion system protein CH60_3035 PF13629 Pilus formation protein N terminal region CH60_3035 PF04972 BON domain CH60_3035 PF00263 Bacterial type II and III secretion system protein CH60_3036 PF13629 Pilus formation protein N terminal region CH60_3036 PF04972 BON domain CH60_3036 PF00263 Bacterial type II and III secretion system protein CH60_3039 PF01797 Transposase IS200 like CH60_304 PF07715 TonB-dependent Receptor Plug Domain CH60_304 PF00593 TonB dependent receptor CH60_3040 PF00577 Outer membrane usher protein CH60_3040 PF13954 PapC N-terminal domain CH60_3040 PF13953 PapC C-terminal domain CH60_3041 PF02753 Pili assembly chaperone PapD, C-terminal domain CH60_3041 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH60_3042 PF00419 Fimbrial protein CH60_3042 PF09222 Fimbrial adhesin F17-AG, lectin domain CH60_3043 PF01497 Periplasmic binding protein CH60_3046 PF00771 FHIPEP family CH60_3047 PF00771 FHIPEP family CH60_3048 PF01312 FlhB HrpN YscU SpaS Family CH60_3049 PF01311 Bacterial export proteins, family 1 CH60_305 PF05171 Haemin-degrading HemS.ChuX domain CH60_3050 PF01313 Bacterial export proteins, family 3 CH60_3051 PF00813 FliP family CH60_3052 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH60_3054 PF00158 Sigma-54 interaction domain CH60_3054 PF02954 Bacterial regulatory protein, Fis family CH60_3054 PF00072 Response regulator receiver domain CH60_3055 PF02049 Flagellar hook-basal body complex protein FliE CH60_3056 PF01514 Secretory protein of YscJ/FliF family CH60_3056 PF08345 Flagellar M-ring protein C-terminal CH60_3059 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH60_3059 PF18269 T3SS EscN ATPase C-terminal domain CH60_306 PF01497 Periplasmic binding protein CH60_3063 PF13144 Chaperone for flagella basal body P-ring formation CH60_3064 PF00460 Flagella basal body rod protein CH60_3065 PF00460 Flagella basal body rod protein CH60_3065 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH60_3066 PF03963 Flagellar hook capping protein - N-terminal region CH60_3066 PF13861 FlgD Tudor-like domain CH60_3066 PF13860 FlgD Ig-like domain CH60_3067 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH60_3067 PF07559 Flagellar basal body protein FlaE CH60_3067 PF00460 Flagella basal body rod protein CH60_3068 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH60_3068 PF00460 Flagella basal body rod protein CH60_3069 PF00460 Flagella basal body rod protein CH60_3069 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH60_307 PF01032 FecCD transport family CH60_3070 PF02107 Flagellar L-ring protein CH60_3071 PF02119 Flagellar P-ring protein CH60_3073 PF00460 Flagella basal body rod protein CH60_3073 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH60_3077 PF00486 Transcriptional regulatory protein, C terminal CH60_3077 PF18500 CadC C-terminal domain 1 CH60_3078 PF00669 Bacterial flagellin N-terminal helical region CH60_3078 PF00700 Bacterial flagellin C-terminal helical region CH60_3079 PF00669 Bacterial flagellin N-terminal helical region CH60_3079 PF00700 Bacterial flagellin C-terminal helical region CH60_308 PF00005 ABC transporter CH60_3080 PF00700 Bacterial flagellin C-terminal helical region CH60_3080 PF00669 Bacterial flagellin N-terminal helical region CH60_3081 PF00700 Bacterial flagellin C-terminal helical region CH60_3081 PF00669 Bacterial flagellin N-terminal helical region CH60_3082 PF00700 Bacterial flagellin C-terminal helical region CH60_3082 PF00669 Bacterial flagellin N-terminal helical region CH60_3084 PF02465 Flagellar hook-associated protein 2 N-terminus CH60_3084 PF07195 Flagellar hook-associated protein 2 C-terminus CH60_3084 PF07196 Flagellin hook IN motif CH60_3089 PF04545 Sigma-70, region 4 CH60_3089 PF04542 Sigma-70 region 2 CH60_309 PF01053 Cys/Met metabolism PLP-dependent enzyme CH60_3090 PF01618 MotA/TolQ/ExbB proton channel family CH60_3091 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH60_3091 PF00691 OmpA family CH60_3095 PF05433 Glycine zipper 2TM domain CH60_3096 PF05433 Glycine zipper 2TM domain CH60_3099 PF13333 Integrase core domain CH60_3099 PF00665 Integrase core domain CH60_3099 PF13276 HTH-like domain CH60_31 PF00563 EAL domain CH60_310 PF03222 Tryptophan/tyrosine permease family CH60_3103 PF05638 Type VI secretion system effector, Hcp CH60_3105 PF07148 Maltose operon periplasmic protein precursor (MalM) CH60_3106 PF02264 LamB porin CH60_3107 PF17912 MalK OB fold domain CH60_3107 PF00005 ABC transporter CH60_3109 PF01547 Bacterial extracellular solute-binding protein CH60_311 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_311 PF03466 LysR substrate binding domain CH60_3110 PF00528 Binding-protein-dependent transport system inner membrane component CH60_3110 PF14785 Maltose transport system permease protein MalF P2 domain CH60_3111 PF00528 Binding-protein-dependent transport system inner membrane component CH60_3112 PF06146 Phosphate-starvation-inducible E CH60_3113 PF00342 Phosphoglucose isomerase CH60_3114 PF00696 Amino acid kinase family CH60_3114 PF01842 ACT domain CH60_3115 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH60_3115 PF17287 POTRA domain CH60_3115 PF08479 POTRA domain, ShlB-type CH60_3116 PF05860 haemagglutination activity domain CH60_3116 PF13332 Hemagglutinin repeat CH60_3117 PF02310 B12 binding domain CH60_3117 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH60_3117 PF02574 Homocysteine S-methyltransferase CH60_3117 PF00809 Pterin binding enzyme CH60_3117 PF02607 B12 binding domain CH60_3118 PF01614 Bacterial transcriptional regulator CH60_3118 PF09339 IclR helix-turn-helix domain CH60_3119 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH60_312 PF01206 Sulfurtransferase TusA CH60_3120 PF00463 Isocitrate lyase family CH60_3121 PF01274 Malate synthase CH60_3122 PF04204 Homoserine O-succinyltransferase CH60_3124 PF00872 Transposase, Mutator family CH60_313 PF04143 Sulphur transport CH60_3135 PF02142 MGS-like domain CH60_3135 PF01808 AICARFT/IMPCHase bienzyme CH60_3136 PF02843 Phosphoribosylglycinamide synthetase, C domain CH60_3136 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH60_3136 PF02844 Phosphoribosylglycinamide synthetase, N domain CH60_3137 PF07356 Protein of unknown function (DUF1481) CH60_3138 PF00216 Bacterial DNA-binding protein CH60_3139 PF04222 Protein of unknown function (DUF416) CH60_314 PF01312 FlhB HrpN YscU SpaS Family CH60_3140 PF04493 Endonuclease V CH60_3141 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH60_3143 PF00293 NUDIX domain CH60_3143 PF09297 NADH pyrophosphatase zinc ribbon domain CH60_3144 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH60_3145 PF13667 ThiC-associated domain CH60_3145 PF01964 Radical SAM ThiC family CH60_3146 PF02581 Thiamine monophosphate synthase CH60_3147 PF00899 ThiF family CH60_3149 PF05690 Thiazole biosynthesis protein ThiG CH60_315 PF01311 Bacterial export proteins, family 1 CH60_3150 PF06968 Biotin and Thiamin Synthesis associated domain CH60_3150 PF04055 Radical SAM superfamily CH60_3151 PF00623 RNA polymerase Rpb1, domain 2 CH60_3151 PF04997 RNA polymerase Rpb1, domain 1 CH60_3151 PF04983 RNA polymerase Rpb1, domain 3 CH60_3151 PF05000 RNA polymerase Rpb1, domain 4 CH60_3151 PF04998 RNA polymerase Rpb1, domain 5 CH60_3152 PF00562 RNA polymerase Rpb2, domain 6 CH60_3152 PF04560 RNA polymerase Rpb2, domain 7 CH60_3152 PF10385 RNA polymerase beta subunit external 1 domain CH60_3152 PF04563 RNA polymerase beta subunit CH60_3152 PF04561 RNA polymerase Rpb2, domain 2 CH60_3152 PF04565 RNA polymerase Rpb2, domain 3 CH60_3154 PF16320 Ribosomal protein L7/L12 dimerisation domain CH60_3154 PF00542 Ribosomal protein L7/L12 C-terminal domain CH60_3155 PF00466 Ribosomal protein L10 CH60_3156 PF00687 Ribosomal protein L1p/L10e family CH60_3157 PF00298 Ribosomal protein L11, RNA binding domain CH60_3157 PF03946 Ribosomal protein L11, N-terminal domain CH60_3158 PF00467 KOW motif CH60_3158 PF02357 Transcription termination factor nusG CH60_3159 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH60_316 PF01313 Bacterial export proteins, family 3 CH60_3160 PF03143 Elongation factor Tu C-terminal domain CH60_3160 PF00009 Elongation factor Tu GTP binding domain CH60_3160 PF03144 Elongation factor Tu domain 2 CH60_3165 PF01695 IstB-like ATP binding protein CH60_3166 PF00665 Integrase core domain CH60_3166 PF02796 Helix-turn-helix domain of resolvase CH60_3168 PF01797 Transposase IS200 like CH60_3169 PF00884 Sulfatase CH60_317 PF00813 FliP family CH60_3170 PF00455 DeoR C terminal sensor domain CH60_3170 PF08220 DeoR-like helix-turn-helix domain CH60_3171 PF08013 Tagatose 6 phosphate kinase CH60_3172 PF01380 SIS domain CH60_3173 PF03830 PTS system sorbose subfamily IIB component CH60_3174 PF03609 PTS system sorbose-specific iic component CH60_3175 PF03613 PTS system mannose/fructose/sorbose family IID component CH60_3176 PF03610 PTS system fructose IIA component CH60_3177 PF01979 Amidohydrolase family CH60_318 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH60_3180 PF04055 Radical SAM superfamily CH60_3180 PF13186 Iron-sulfur cluster-binding domain CH60_3181 PF00884 Sulfatase CH60_3183 PF01116 Fructose-bisphosphate aldolase class-II CH60_3186 PF00356 Bacterial regulatory proteins, lacI family CH60_3187 PF07690 Major Facilitator Superfamily CH60_3188 PF17137 Domain of unknown function (DUF5110) CH60_3188 PF13802 Galactose mutarotase-like CH60_3188 PF01055 Glycosyl hydrolases family 31 CH60_3188 PF16338 Domain of unknown function (DUF4968) CH60_3189 PF00356 Bacterial regulatory proteins, lacI family CH60_3190 PF02264 LamB porin CH60_3191 PF00367 phosphotransferase system, EIIB CH60_3191 PF02378 Phosphotransferase system, EIIC CH60_3192 PF02449 Beta-galactosidase CH60_3192 PF08532 Beta-galactosidase trimerisation domain CH60_3192 PF08533 Beta-galactosidase C-terminal domain CH60_3193 PF07745 Glycosyl hydrolase family 53 CH60_3194 PF00528 Binding-protein-dependent transport system inner membrane component CH60_3195 PF00528 Binding-protein-dependent transport system inner membrane component CH60_3196 PF13416 Bacterial extracellular solute-binding protein CH60_3197 PF17912 MalK OB fold domain CH60_3197 PF00005 ABC transporter CH60_3198 PF00005 ABC transporter CH60_3199 PF02653 Branched-chain amino acid transport system / permease component CH60_32 PF01361 Tautomerase enzyme CH60_3200 PF13407 Periplasmic binding protein domain CH60_3202 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CH60_3203 PF03551 Transcriptional regulator PadR-like family CH60_321 PF18269 T3SS EscN ATPase C-terminal domain CH60_321 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH60_322 PF00771 FHIPEP family CH60_3220 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA CH60_3221 PF15723 Motility quorum-sensing regulator, toxin of MqsA CH60_3225 PF14659 Phage integrase, N-terminal SAM-like domain CH60_3225 PF00589 Phage integrase family CH60_3225 PF13356 Arm DNA-binding domain CH60_3227 PF00152 tRNA synthetases class II (D, K and N) CH60_3227 PF01336 OB-fold nucleic acid binding domain CH60_3228 PF03462 PCRF domain CH60_3228 PF00472 RF-1 domain CH60_3229 PF17768 RecJ OB domain CH60_3229 PF01368 DHH family CH60_3229 PF02272 DHHA1 domain CH60_3230 PF10411 Disulfide bond isomerase protein N-terminus CH60_3230 PF13098 Thioredoxin-like domain CH60_3231 PF02899 Phage integrase, N-terminal SAM-like domain CH60_3231 PF00589 Phage integrase family CH60_3232 PF00258 Flavodoxin CH60_3233 PF06123 Inner membrane protein CreD CH60_3234 PF00512 His Kinase A (phospho-acceptor) domain CH60_3234 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_3234 PF00672 HAMP domain CH60_3235 PF00072 Response regulator receiver domain CH60_3235 PF00486 Transcriptional regulatory protein, C terminal CH60_3236 PF03937 Flavinator of succinate dehydrogenase CH60_3237 PF01571 Aminomethyltransferase folate-binding domain CH60_3239 PF03006 Haemolysin-III related CH60_3241 PF13018 Extended Signal Peptide of Type V secretion system CH60_3241 PF03895 YadA-like membrane anchor domain CH60_3241 PF05658 Head domain of trimeric autotransporter adhesin CH60_3241 PF05662 Coiled stalk of trimeric autotransporter adhesin CH60_3244 PF02347 Glycine cleavage system P-protein CH60_3245 PF01597 Glycine cleavage H-protein CH60_3246 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH60_3246 PF01571 Aminomethyltransferase folate-binding domain CH60_3247 PF01494 FAD binding domain CH60_3248 PF01494 FAD binding domain CH60_3249 PF00557 Metallopeptidase family M24 CH60_3249 PF05195 Aminopeptidase P, N-terminal domain CH60_325 PF01514 Secretory protein of YscJ/FliF family CH60_3250 PF03695 Uncharacterised protein family (UPF0149) CH60_3251 PF05164 Cell division protein ZapA CH60_3252 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH60_3253 PF01842 ACT domain CH60_3253 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH60_3253 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH60_3254 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH60_3255 PF03466 LysR substrate binding domain CH60_3255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_3256 PF04402 Protein of unknown function (DUF541) CH60_3257 PF01810 LysE type translocator CH60_3258 PF05552 Conserved TM helix CH60_3258 PF00924 Mechanosensitive ion channel CH60_3259 PF01116 Fructose-bisphosphate aldolase class-II CH60_3260 PF00162 Phosphoglycerate kinase CH60_3261 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH60_3261 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH60_3262 PF01797 Transposase IS200 like CH60_3263 PF02779 Transketolase, pyrimidine binding domain CH60_3263 PF00456 Transketolase, thiamine diphosphate binding domain CH60_3263 PF02780 Transketolase, C-terminal domain CH60_3264 PF01435 Peptidase family M48 CH60_3265 PF00355 Rieske [2Fe-2S] domain CH60_3266 PF17810 Arginine decarboxylase helical bundle domain CH60_3266 PF17944 Arginine decarboxylase C-terminal helical extension CH60_3266 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH60_3268 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH60_3268 PF02772 S-adenosylmethionine synthetase, central domain CH60_3268 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH60_3269 PF10263 SprT-like family CH60_3269 PF17283 SprT-like zinc ribbon domain CH60_3270 PF04231 Endonuclease I CH60_3271 PF04452 RNA methyltransferase CH60_3272 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH60_3272 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH60_3273 PF02622 Uncharacterized ACR, COG1678 CH60_3274 PF03652 Holliday junction resolvase CH60_3275 PF00795 Carbon-nitrogen hydrolase CH60_3276 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH60_3277 PF00437 Type II/IV secretion system protein CH60_3278 PF01168 Alanine racemase, N-terminal domain CH60_3279 PF03807 NADP oxidoreductase coenzyme F420-dependent CH60_3279 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH60_3280 PF02325 YGGT family CH60_3281 PF02594 Uncharacterised ACR, YggU family COG1872 CH60_3282 PF01725 Ham1 family CH60_3283 PF06969 HemN C-terminal domain CH60_3283 PF04055 Radical SAM superfamily CH60_3285 PF00872 Transposase, Mutator family CH60_3286 PF00872 Transposase, Mutator family CH60_3287 PF12146 Serine aminopeptidase, S33 CH60_3287 PF16671 Actin cross-linking domain CH60_3287 PF11647 Membrane Localization Domain CH60_3287 PF11713 Peptidase C80 family CH60_3287 PF07634 RtxA repeat CH60_3288 PF11101 Protein of unknown function (DUF2884) CH60_3289 PF11101 Protein of unknown function (DUF2884) CH60_329 PF12833 Helix-turn-helix domain CH60_329 PF14525 AraC-binding-like domain CH60_3290 PF04960 Glutaminase CH60_3291 PF04320 Protein with unknown function (DUF469) CH60_3292 PF02390 Putative methyltransferase CH60_3293 PF10576 Iron-sulfur binding domain of endonuclease III CH60_3293 PF00730 HhH-GPD superfamily base excision DNA repair protein CH60_3293 PF14815 NUDIX domain CH60_3293 PF00633 Helix-hairpin-helix motif CH60_3294 PF04362 Bacterial Fe(2+) trafficking CH60_3295 PF01464 Transglycosylase SLT domain CH60_3295 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CH60_3297 PF07715 TonB-dependent Receptor Plug Domain CH60_3298 PF02653 Branched-chain amino acid transport system / permease component CH60_3299 PF00005 ABC transporter CH60_33 PF00294 pfkB family carbohydrate kinase CH60_3300 PF13407 Periplasmic binding protein domain CH60_3301 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH60_3301 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH60_3301 PF01276 Orn/Lys/Arg decarboxylase, major domain CH60_3303 PF00589 Phage integrase family CH60_3303 PF02899 Phage integrase, N-terminal SAM-like domain CH60_3306 PF03400 IS1 transposase CH60_3307 PF03811 InsA N-terminal domain CH60_3307 PF12759 InsA C-terminal domain CH60_3312 PF03811 InsA N-terminal domain CH60_3312 PF12759 InsA C-terminal domain CH60_3316 PF10431 C-terminal, D2-small domain, of ClpB protein CH60_3316 PF17871 AAA lid domain CH60_3316 PF07724 AAA domain (Cdc48 subfamily) CH60_3316 PF00004 ATPase family associated with various cellular activities (AAA) CH60_3325 PF12759 InsA C-terminal domain CH60_3325 PF03811 InsA N-terminal domain CH60_3327 PF02517 CPBP intramembrane metalloprotease CH60_3329 PF00196 Bacterial regulatory proteins, luxR family CH60_3329 PF03472 Autoinducer binding domain CH60_333 PF01627 Hpt domain CH60_333 PF00072 Response regulator receiver domain CH60_333 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH60_333 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_333 PF00672 HAMP domain CH60_333 PF00512 His Kinase A (phospho-acceptor) domain CH60_3330 PF00765 Autoinducer synthase CH60_3334 PF04183 IucA / IucC family CH60_3334 PF06276 Ferric iron reductase FhuF-like transporter CH60_3335 PF06276 Ferric iron reductase FhuF-like transporter CH60_3335 PF04183 IucA / IucC family CH60_3337 PF04183 IucA / IucC family CH60_3337 PF06276 Ferric iron reductase FhuF-like transporter CH60_3338 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH60_3339 PF00593 TonB dependent receptor CH60_3339 PF07715 TonB-dependent Receptor Plug Domain CH60_334 PF00072 Response regulator receiver domain CH60_334 PF00196 Bacterial regulatory proteins, luxR family CH60_3342 PF00356 Bacterial regulatory proteins, lacI family CH60_3343 PF00939 Sodium:sulfate symporter transmembrane region CH60_3346 PF05593 RHS Repeat CH60_3346 PF03527 RHS protein CH60_3348 PF04717 Type VI secretion system, phage-baseplate injector CH60_3349 PF12951 Passenger-associated-transport-repeat CH60_335 PF00375 Sodium:dicarboxylate symporter family CH60_3350 PF12951 Passenger-associated-transport-repeat CH60_3352 PF02447 GntP family permease CH60_3356 PF00005 ABC transporter CH60_3356 PF00664 ABC transporter transmembrane region CH60_3357 PF00664 ABC transporter transmembrane region CH60_3357 PF00005 ABC transporter CH60_3357 PF04954 Siderophore-interacting protein CH60_3357 PF08021 Siderophore-interacting FAD-binding domain CH60_3359 PF00975 Thioesterase domain CH60_336 PF00501 AMP-binding enzyme CH60_336 PF13193 AMP-binding enzyme C-terminal domain CH60_336 PF16177 Acetyl-coenzyme A synthetase N-terminus CH60_3362 PF00501 AMP-binding enzyme CH60_3362 PF08242 Methyltransferase domain CH60_3362 PF00668 Condensation domain CH60_3362 PF00550 Phosphopantetheine attachment site CH60_3363 PF00501 AMP-binding enzyme CH60_3363 PF00668 Condensation domain CH60_3363 PF13193 AMP-binding enzyme C-terminal domain CH60_3364 PF00501 AMP-binding enzyme CH60_3364 PF00668 Condensation domain CH60_3364 PF08242 Methyltransferase domain CH60_3364 PF00550 Phosphopantetheine attachment site CH60_3365 PF07715 TonB-dependent Receptor Plug Domain CH60_3365 PF00593 TonB dependent receptor CH60_3366 PF07687 Peptidase dimerisation domain CH60_3366 PF01546 Peptidase family M20/M25/M40 CH60_3367 PF02796 Helix-turn-helix domain of resolvase CH60_3367 PF00665 Integrase core domain CH60_3369 PF01695 IstB-like ATP binding protein CH60_337 PF04341 Protein of unknown function, DUF485 CH60_3370 PF01546 Peptidase family M20/M25/M40 CH60_3370 PF07687 Peptidase dimerisation domain CH60_3371 PF03806 AbgT putative transporter family CH60_3372 PF12468 Type III secretion system leucine rich repeat protein CH60_3372 PF14496 C-terminal novel E3 ligase, LRR-interacting CH60_3373 PF12468 Type III secretion system leucine rich repeat protein CH60_3373 PF14496 C-terminal novel E3 ligase, LRR-interacting CH60_3373 PF14496 C-terminal novel E3 ligase, LRR-interacting CH60_3373 PF12468 Type III secretion system leucine rich repeat protein CH60_3374 PF14496 C-terminal novel E3 ligase, LRR-interacting CH60_3374 PF12468 Type III secretion system leucine rich repeat protein CH60_3375 PF03797 Autotransporter beta-domain CH60_3377 PF07906 ShET2 enterotoxin, N-terminal region CH60_3378 PF00873 AcrB/AcrD/AcrF family CH60_3379 PF00529 HlyD membrane-fusion protein of T1SS CH60_3379 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH60_338 PF00474 Sodium:solute symporter family CH60_3380 PF00563 EAL domain CH60_3380 PF13188 PAS domain CH60_3380 PF03707 Bacterial signalling protein N terminal repeat CH60_3380 PF00990 Diguanylate cyclase, GGDEF domain CH60_3381 PF00665 Integrase core domain CH60_3381 PF13276 HTH-like domain CH60_3381 PF13333 Integrase core domain CH60_3389 PF10431 C-terminal, D2-small domain, of ClpB protein CH60_3389 PF07724 AAA domain (Cdc48 subfamily) CH60_3389 PF17871 AAA lid domain CH60_3389 PF00004 ATPase family associated with various cellular activities (AAA) CH60_3396 PF04717 Type VI secretion system, phage-baseplate injector CH60_3399 PF05593 RHS Repeat CH60_3399 PF03527 RHS protein CH60_3399 PF14220 Domain of unknown function (DUF4329) CH60_34 PF00675 Insulinase (Peptidase family M16) CH60_34 PF05193 Peptidase M16 inactive domain CH60_340 PF02796 Helix-turn-helix domain of resolvase CH60_340 PF00665 Integrase core domain CH60_3405 PF04717 Type VI secretion system, phage-baseplate injector CH60_3407 PF03527 RHS protein CH60_3407 PF05593 RHS Repeat CH60_3410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH60_3410 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH60_3411 PF12833 Helix-turn-helix domain CH60_3411 PF02311 AraC-like ligand binding domain CH60_3412 PF05025 RbsD / FucU transport protein family CH60_3413 PF00294 pfkB family carbohydrate kinase CH60_3415 PF03358 NADPH-dependent FMN reductase CH60_3418 PF00296 Luciferase-like monooxygenase CH60_3419 PF00528 Binding-protein-dependent transport system inner membrane component CH60_342 PF01695 IstB-like ATP binding protein CH60_3420 PF00005 ABC transporter CH60_3421 PF04221 RelB antitoxin CH60_3422 PF00860 Permease family CH60_3423 PF00999 Sodium/hydrogen exchanger family CH60_3425 PF03279 Bacterial lipid A biosynthesis acyltransferase CH60_3427 PF00005 ABC transporter CH60_3428 PF02653 Branched-chain amino acid transport system / permease component CH60_343 PF01817 Chorismate mutase type II CH60_343 PF00800 Prephenate dehydratase CH60_3430 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH60_3430 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH60_3431 PF01380 SIS domain CH60_3431 PF00571 CBS domain CH60_3432 PF02798 Glutathione S-transferase, N-terminal domain CH60_3435 PF01797 Transposase IS200 like CH60_3436 PF00313 'Cold-shock' DNA-binding domain CH60_3437 PF00313 'Cold-shock' DNA-binding domain CH60_3438 PF05433 Glycine zipper 2TM domain CH60_3439 PF00753 Metallo-beta-lactamase superfamily CH60_344 PF01817 Chorismate mutase type II CH60_344 PF02153 Prephenate dehydrogenase CH60_3440 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH60_3440 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH60_3441 PF02627 Carboxymuconolactone decarboxylase family CH60_3442 PF07690 Major Facilitator Superfamily CH60_3445 PF02954 Bacterial regulatory protein, Fis family CH60_3446 PF01207 Dihydrouridine synthase (Dus) CH60_3448 PF00474 Sodium:solute symporter family CH60_3449 PF06196 Protein of unknown function (DUF997) CH60_345 PF00793 DAHP synthetase I family CH60_3451 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH60_3451 PF00289 Biotin carboxylase, N-terminal domain CH60_3451 PF02785 Biotin carboxylase C-terminal domain CH60_3452 PF00364 Biotin-requiring enzyme CH60_3453 PF01220 Dehydroquinase class II CH60_3454 PF01794 Ferric reductase like transmembrane component CH60_3455 PF00174 Oxidoreductase molybdopterin binding domain CH60_3456 PF00107 Zinc-binding dehydrogenase CH60_3456 PF08240 Alcohol dehydrogenase GroES-like domain CH60_3457 PF00563 EAL domain CH60_3457 PF00990 Diguanylate cyclase, GGDEF domain CH60_3457 PF17157 Gammaproteobacterial periplasmic sensor domain CH60_3459 PF04085 rod shape-determining protein MreC CH60_346 PF04397 LytTr DNA-binding domain CH60_346 PF00072 Response regulator receiver domain CH60_3460 PF04093 rod shape-determining protein MreD CH60_3461 PF02545 Maf-like protein CH60_3462 PF00575 S1 RNA binding domain CH60_3462 PF10150 Ribonuclease E/G family CH60_3463 PF13116 Protein of unknown function CH60_3463 PF13502 AsmA-like C-terminal region CH60_3464 PF00795 Carbon-nitrogen hydrolase CH60_3465 PF01523 Putative modulator of DNA gyrase CH60_3466 PF14431 YwqJ-like deaminase CH60_3466 PF18807 Tripartite Tc toxins repeat CH60_3467 PF05785 Rho-activating domain of cytotoxic necrotizing factor CH60_3467 PF18807 Tripartite Tc toxins repeat CH60_347 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH60_3471 PF12256 Insecticide toxin TcdB middle/N-terminal region CH60_3471 PF12255 Insecticide toxin TcdB middle/C-terminal region CH60_3471 PF03534 Salmonella virulence plasmid 65kDa B protein CH60_3472 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain CH60_3472 PF18413 Neuraminidase-like domain CH60_3475 PF03466 LysR substrate binding domain CH60_3475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_3476 PF07869 Protein of unknown function (DUF1656) CH60_3477 PF13533 Biotin-lipoyl like CH60_3478 PF04632 Fusaric acid resistance protein family CH60_3479 PF00171 Aldehyde dehydrogenase family CH60_348 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH60_3480 PF00171 Aldehyde dehydrogenase family CH60_3482 PF01337 Barstar (barnase inhibitor) CH60_3483 PF04751 Protein of unknown function (DUF615) CH60_3484 PF01523 Putative modulator of DNA gyrase CH60_3486 PF07361 Cytochrome b562 CH60_3487 PF01272 Transcription elongation factor, GreA/GreB, C-term CH60_3487 PF14760 Rnk N-terminus CH60_3488 PF00128 Alpha amylase, catalytic domain CH60_3488 PF11941 Domain of unknown function (DUF3459) CH60_3489 PF00367 phosphotransferase system, EIIB CH60_3489 PF02378 Phosphotransferase system, EIIC CH60_349 PF04338 Protein of unknown function, DUF481 CH60_3490 PF00356 Bacterial regulatory proteins, lacI family CH60_3492 PF01042 Endoribonuclease L-PSP CH60_3493 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH60_3493 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH60_3494 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH60_3494 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH60_3495 PF00381 PTS HPr component phosphorylation site CH60_3496 PF03668 P-loop ATPase protein family CH60_3497 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH60_3498 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH60_3499 PF04552 Sigma-54, DNA binding domain CH60_3499 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH60_3499 PF04963 Sigma-54 factor, core binding domain CH60_350 PF01245 Ribosomal protein L19 CH60_3500 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH60_3500 PF00005 ABC transporter CH60_3501 PF03968 OstA-like protein CH60_3502 PF06835 Lipopolysaccharide-assembly, LptC-related CH60_3504 PF01380 SIS domain CH60_3504 PF00571 CBS domain CH60_3505 PF01699 Sodium/calcium exchanger protein CH60_3506 PF00005 ABC transporter CH60_3507 PF02405 Permease MlaE CH60_3508 PF02470 MlaD protein CH60_3509 PF05494 MlaC protein CH60_351 PF01746 tRNA (Guanine-1)-methyltransferase CH60_3510 PF13466 STAS domain CH60_3511 PF01722 BolA-like protein CH60_3512 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH60_3513 PF13180 PDZ domain CH60_3514 PF01797 Transposase IS200 like CH60_3515 PF00682 HMGL-like CH60_3515 PF08502 LeuA allosteric (dimerisation) domain CH60_3516 PF00180 Isocitrate/isopropylmalate dehydrogenase CH60_3517 PF00330 Aconitase family (aconitate hydratase) CH60_3518 PF00694 Aconitase C-terminal domain CH60_3519 PF01695 IstB-like ATP binding protein CH60_352 PF01782 RimM N-terminal domain CH60_352 PF05239 PRC-barrel domain CH60_3521 PF00665 Integrase core domain CH60_3521 PF02796 Helix-turn-helix domain of resolvase CH60_3522 PF00694 Aconitase C-terminal domain CH60_3523 PF07690 Major Facilitator Superfamily CH60_3524 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH60_3524 PF12793 Sugar transport-related sRNA regulator N-term CH60_3527 PF00528 Binding-protein-dependent transport system inner membrane component CH60_3528 PF00005 ABC transporter CH60_3529 PF09335 SNARE associated Golgi protein CH60_353 PF00886 Ribosomal protein S16 CH60_3530 PF00136 DNA polymerase family B CH60_3530 PF03104 DNA polymerase family B, exonuclease domain CH60_3531 PF18339 RapA N-terminal Tudor like domain 1 CH60_3531 PF00271 Helicase conserved C-terminal domain CH60_3531 PF12137 RNA polymerase recycling family C-terminal CH60_3531 PF00176 SNF2 family N-terminal domain CH60_3531 PF18337 RapA N-terminal Tudor like domain CH60_3534 PF05736 OprF membrane domain CH60_3534 PF00691 OmpA family CH60_354 PF00448 SRP54-type protein, GTPase domain CH60_354 PF02881 SRP54-type protein, helical bundle domain CH60_354 PF02978 Signal peptide binding domain CH60_3543 PF17871 AAA lid domain CH60_3543 PF10431 C-terminal, D2-small domain, of ClpB protein CH60_3543 PF00004 ATPase family associated with various cellular activities (AAA) CH60_3543 PF07724 AAA domain (Cdc48 subfamily) CH60_355 PF01578 Cytochrome C assembly protein CH60_3552 PF00849 RNA pseudouridylate synthase CH60_3553 PF05099 Tellurite resistance protein TerB CH60_3553 PF00226 DnaJ domain CH60_3554 PF04453 LPS transport system D CH60_3554 PF03968 OstA-like protein CH60_3555 PF09312 SurA N-terminal domain CH60_3555 PF00639 PPIC-type PPIASE domain CH60_3556 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH60_3557 PF00398 Ribosomal RNA adenine dimethylase CH60_3558 PF04379 ApaG domain CH60_3559 PF00149 Calcineurin-like phosphoesterase CH60_356 PF00571 CBS domain CH60_356 PF03471 Transporter associated domain CH60_356 PF01595 Cyclin M transmembrane N-terminal domain CH60_3561 PF00186 Dihydrofolate reductase CH60_3562 PF12821 Threonine/Serine exporter, ThrE CH60_3563 PF06738 Putative threonine/serine exporter CH60_3564 PF01810 LysE type translocator CH60_3565 PF02142 MGS-like domain CH60_3565 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH60_3565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH60_3566 PF00117 Glutamine amidotransferase class-I CH60_3566 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH60_3567 PF05173 Dihydrodipicolinate reductase, C-terminus CH60_3567 PF01113 Dihydrodipicolinate reductase, N-terminus CH60_3568 PF01797 Transposase IS200 like CH60_3569 PF02401 LytB protein CH60_357 PF02664 S-Ribosylhomocysteinase (LuxS) CH60_3570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH60_3571 PF01252 Signal peptidase (SPase) II CH60_3572 PF06827 Zinc finger found in FPG and IleRS CH60_3572 PF08264 Anticodon-binding domain of tRNA CH60_3572 PF00133 tRNA synthetases class I (I, L, M and V) CH60_3573 PF01687 Riboflavin kinase CH60_3573 PF06574 FAD synthetase CH60_3574 PF01649 Ribosomal protein S20 CH60_3575 PF03466 LysR substrate binding domain CH60_3575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_3576 PF06965 Na+/H+ antiporter 1 CH60_3577 PF01556 DnaJ C terminal domain CH60_3577 PF00226 DnaJ domain CH60_3577 PF00684 DnaJ central domain CH60_3578 PF00012 Hsp70 protein CH60_3579 PF01184 GPR1/FUN34/yaaH family CH60_358 PF04262 Glutamate-cysteine ligase CH60_3581 PF07690 Major Facilitator Superfamily CH60_3582 PF00994 Probable molybdopterin binding domain CH60_3585 PF03883 Peroxide stress protein YaaA CH60_3587 PF00291 Pyridoxal-phosphate dependent enzyme CH60_3587 PF14821 Threonine synthase N terminus CH60_3588 PF08544 GHMP kinases C terminal CH60_3588 PF00288 GHMP kinases N terminal domain CH60_359 PF09335 SNARE associated Golgi protein CH60_3592 PF00072 Response regulator receiver domain CH60_3592 PF00486 Transcriptional regulatory protein, C terminal CH60_3593 PF05981 CreA protein CH60_3595 PF00300 Histidine phosphatase superfamily (branch 1) CH60_3596 PF06445 GyrI-like small molecule binding domain CH60_3596 PF12833 Helix-turn-helix domain CH60_3597 PF01371 Trp repressor protein CH60_3598 PF01931 Protein of unknown function DUF84 CH60_3599 PF01464 Transglycosylase SLT domain CH60_3599 PF14718 Soluble lytic murein transglycosylase L domain CH60_36 PF00375 Sodium:dicarboxylate symporter family CH60_360 PF13419 Haloacid dehalogenase-like hydrolase CH60_3600 PF00689 Cation transporting ATPase, C-terminus CH60_3600 PF00690 Cation transporter/ATPase, N-terminus CH60_3602 PF17152 Periplasmic sensor domain CH60_3602 PF00990 Diguanylate cyclase, GGDEF domain CH60_3603 PF00691 OmpA family CH60_3604 PF00005 ABC transporter CH60_3604 PF12848 ABC transporter CH60_3606 PF13521 AAA domain CH60_3606 PF01381 Helix-turn-helix CH60_3607 PF18073 Rubredoxin metal binding domain CH60_3608 PF18429 Domain of unknown function (DUF5609) CH60_3609 PF10144 Bacterial virulence factor haemolysin CH60_3610 PF01048 Phosphorylase superfamily CH60_3611 PF01676 Metalloenzyme superfamily CH60_3612 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH60_3612 PF00591 Glycosyl transferase family, a/b domain CH60_3612 PF02885 Glycosyl transferase family, helical bundle domain CH60_3613 PF01791 DeoC/LacD family aldolase CH60_3614 PF07670 Nucleoside recognition CH60_3614 PF07662 Na+ dependent nucleoside transporter C-terminus CH60_3614 PF01773 Na+ dependent nucleoside transporter N-terminus CH60_3615 PF01026 TatD related DNase CH60_3616 PF01734 Patatin-like phospholipase CH60_3617 PF07043 Protein of unknown function (DUF1328) CH60_3618 PF04972 BON domain CH60_3619 PF00009 Elongation factor Tu GTP binding domain CH60_3619 PF03144 Elongation factor Tu domain 2 CH60_3619 PF16658 Class II release factor RF3, C-terminal domain CH60_3620 PF00583 Acetyltransferase (GNAT) family CH60_3621 PF03603 DNA polymerase III psi subunit CH60_3622 PF08468 Methyltransferase small domain N-terminal CH60_3622 PF05175 Methyltransferase small domain CH60_3624 PF07256 Protein of unknown function (DUF1435) CH60_3625 PF00990 Diguanylate cyclase, GGDEF domain CH60_3626 PF01095 Pectinesterase CH60_3628 PF00873 AcrB/AcrD/AcrF family CH60_3629 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH60_3632 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH60_3633 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH60_3633 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH60_3634 PF04198 Putative sugar-binding domain CH60_3634 PF00325 Bacterial regulatory proteins, crp family CH60_3635 PF00005 ABC transporter CH60_3636 PF02653 Branched-chain amino acid transport system / permease component CH60_3637 PF02653 Branched-chain amino acid transport system / permease component CH60_3638 PF13407 Periplasmic binding protein domain CH60_3639 PF01791 DeoC/LacD family aldolase CH60_3640 PF03992 Antibiotic biosynthesis monooxygenase CH60_3641 PF10696 Protein of unknown function (DUF2501) CH60_3642 PF00381 PTS HPr component phosphorylation site CH60_3642 PF02896 PEP-utilising enzyme, TIM barrel domain CH60_3642 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH60_3642 PF05524 PEP-utilising enzyme, N-terminal CH60_3642 PF00391 PEP-utilising enzyme, mobile domain CH60_3644 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH60_3645 PF12833 Helix-turn-helix domain CH60_3646 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH60_3648 PF05987 Bacterial protein of unknown function (DUF898) CH60_365 PF02599 Global regulator protein family CH60_3656 PF01555 DNA methylase CH60_3657 PF01527 Transposase CH60_3658 PF13276 HTH-like domain CH60_3658 PF13683 Integrase core domain CH60_366 PF01411 tRNA synthetases class II (A) CH60_366 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH60_366 PF02272 DHHA1 domain CH60_3660 PF12102 Domain of unknown function (DUF3578) CH60_3660 PF07728 AAA domain (dynein-related subfamily) CH60_3661 PF00665 Integrase core domain CH60_3661 PF02796 Helix-turn-helix domain of resolvase CH60_3663 PF01695 IstB-like ATP binding protein CH60_3665 PF00293 NUDIX domain CH60_3666 PF07516 SecA Wing and Scaffold domain CH60_3666 PF01043 SecA preprotein cross-linking domain CH60_3666 PF07517 SecA DEAD-like domain CH60_3666 PF02810 SEC-C motif CH60_3667 PF06558 Secretion monitor precursor protein (SecM) CH60_3669 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH60_367 PF02631 RecX family CH60_3670 PF12327 FtsZ family, C-terminal domain CH60_3670 PF00091 Tubulin/FtsZ family, GTPase domain CH60_3671 PF02491 SHS2 domain inserted in FTSA CH60_3672 PF03799 Cell division protein FtsQ CH60_3672 PF08478 POTRA domain, FtsQ-type CH60_3673 PF07478 D-ala D-ala ligase C-terminus CH60_3673 PF01820 D-ala D-ala ligase N-terminus CH60_3674 PF08245 Mur ligase middle domain CH60_3674 PF01225 Mur ligase family, catalytic domain CH60_3674 PF02875 Mur ligase family, glutamate ligase domain CH60_3675 PF03033 Glycosyltransferase family 28 N-terminal domain CH60_3675 PF04101 Glycosyltransferase family 28 C-terminal domain CH60_3676 PF01098 Cell cycle protein CH60_3677 PF08245 Mur ligase middle domain CH60_3677 PF02875 Mur ligase family, glutamate ligase domain CH60_3678 PF00953 Glycosyl transferase family 4 CH60_3678 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH60_3679 PF01225 Mur ligase family, catalytic domain CH60_3679 PF02875 Mur ligase family, glutamate ligase domain CH60_3679 PF08245 Mur ligase middle domain CH60_368 PF00154 recA bacterial DNA recombination protein CH60_3680 PF02875 Mur ligase family, glutamate ligase domain CH60_3680 PF08245 Mur ligase middle domain CH60_3680 PF01225 Mur ligase family, catalytic domain CH60_3681 PF03717 Penicillin-binding Protein dimerisation domain CH60_3681 PF00905 Penicillin binding protein transpeptidase domain CH60_3682 PF04999 Cell division protein FtsL CH60_3683 PF01795 MraW methylase family CH60_3684 PF02381 MraZ protein, putative antitoxin-like CH60_3685 PF06610 L-alanine exporter CH60_3686 PF00356 Bacterial regulatory proteins, lacI family CH60_3686 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH60_3687 PF01797 Transposase IS200 like CH60_3688 PF10369 Small subunit of acetolactate synthase CH60_3689 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH60_3689 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH60_3689 PF00205 Thiamine pyrophosphate enzyme, central domain CH60_369 PF02464 Competence-damaged protein CH60_3690 PF00501 AMP-binding enzyme CH60_3691 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_3691 PF03466 LysR substrate binding domain CH60_3693 PF01797 Transposase IS200 like CH60_3694 PF00595 PDZ domain CH60_3694 PF13180 PDZ domain CH60_3695 PF06295 Protein of unknown function (DUF1043) CH60_3696 PF03969 AFG1-like ATPase CH60_3697 PF00572 Ribosomal protein L13 CH60_3698 PF00380 Ribosomal protein S9/S16 CH60_3699 PF02798 Glutathione S-transferase, N-terminal domain CH60_3699 PF00043 Glutathione S-transferase, C-terminal domain CH60_370 PF07690 Major Facilitator Superfamily CH60_3700 PF04386 Stringent starvation protein B CH60_3702 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH60_3702 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH60_3703 PF01493 GXGXG motif CH60_3703 PF00310 Glutamine amidotransferases class-II CH60_3703 PF04898 Glutamate synthase central domain CH60_3703 PF01645 Conserved region in glutamate synthase CH60_3704 PF04055 Radical SAM superfamily CH60_3704 PF16199 Radical_SAM C-terminal domain CH60_3705 PF00512 His Kinase A (phospho-acceptor) domain CH60_3705 PF01627 Hpt domain CH60_3705 PF00989 PAS fold CH60_3705 PF00072 Response regulator receiver domain CH60_3705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_3705 PF18415 Histidine kinase receptor ArcB trans-membrane domain CH60_3707 PF00912 Transglycosylase CH60_3708 PF04972 BON domain CH60_3709 PF13580 SIS domain CH60_3710 PF02021 Uncharacterised protein family UPF0102 CH60_3711 PF04348 LppC putative lipoprotein CH60_3712 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH60_3713 PF02678 Pirin CH60_3713 PF17954 Quercetinase C-terminal cupin domain CH60_3714 PF03466 LysR substrate binding domain CH60_3714 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_3715 PF13409 Glutathione S-transferase, N-terminal domain CH60_3716 PF01695 IstB-like ATP binding protein CH60_3718 PF02796 Helix-turn-helix domain of resolvase CH60_3718 PF00665 Integrase core domain CH60_3719 PF01026 TatD related DNase CH60_3720 PF00902 Sec-independent protein translocase protein (TatC) CH60_3722 PF02416 mttA/Hcf106 family CH60_3723 PF03109 ABC1 family CH60_3724 PF02036 SCP-2 sterol transfer family CH60_3725 PF01209 ubiE/COQ5 methyltransferase family CH60_3726 PF02646 RmuC family CH60_3727 PF09335 SNARE associated Golgi protein CH60_3728 PF02554 Carbon starvation protein CstA CH60_3728 PF13722 5TM C-terminal transporter carbon starvation CstA CH60_373 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH60_373 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH60_3730 PF01048 Phosphorylase superfamily CH60_3731 PF01738 Dienelactone hydrolase family CH60_3732 PF01717 Cobalamin-independent synthase, Catalytic domain CH60_3732 PF08267 Cobalamin-independent synthase, N-terminal domain CH60_3733 PF00892 EamA-like transporter family CH60_3734 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_3734 PF03466 LysR substrate binding domain CH60_3735 PF03547 Membrane transport protein CH60_3736 PF03009 Glycerophosphoryl diester phosphodiesterase family CH60_3737 PF00005 ABC transporter CH60_3737 PF17912 MalK OB fold domain CH60_3738 PF00528 Binding-protein-dependent transport system inner membrane component CH60_3739 PF00528 Binding-protein-dependent transport system inner membrane component CH60_374 PF02780 Transketolase, C-terminal domain CH60_374 PF02779 Transketolase, pyrimidine binding domain CH60_3740 PF13416 Bacterial extracellular solute-binding protein CH60_3748 PF00005 ABC transporter CH60_3749 PF00005 ABC transporter CH60_3749 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH60_375 PF00456 Transketolase, thiamine diphosphate binding domain CH60_3750 PF02653 Branched-chain amino acid transport system / permease component CH60_3750 PF11862 Domain of unknown function (DUF3382) CH60_3751 PF02653 Branched-chain amino acid transport system / permease component CH60_3752 PF13458 Periplasmic binding protein CH60_3753 PF12568 Acetyltransferase (GNAT) domain, PanZ CH60_3754 PF01797 Transposase IS200 like CH60_3755 PF04545 Sigma-70, region 4 CH60_3755 PF00140 Sigma-70 factor, region 1.2 CH60_3755 PF04542 Sigma-70 region 2 CH60_3756 PF18075 FtsX extracellular domain CH60_3756 PF02687 FtsX-like permease family CH60_3757 PF00005 ABC transporter CH60_3758 PF00448 SRP54-type protein, GTPase domain CH60_3758 PF00448 SRP54-type protein, GTPase domain CH60_3758 PF02881 SRP54-type protein, helical bundle domain CH60_3758 PF02881 SRP54-type protein, helical bundle domain CH60_376 PF02653 Branched-chain amino acid transport system / permease component CH60_3760 PF06611 Protein of unknown function (DUF1145) CH60_3763 PF07947 YhhN family CH60_3764 PF00403 Heavy-metal-associated domain CH60_3765 PF01206 Sulfurtransferase TusA CH60_3766 PF02592 Putative vitamin uptake transporter CH60_3767 PF08786 DcrB CH60_3768 PF02754 Cysteine-rich domain CH60_3768 PF13183 4Fe-4S dicluster domain CH60_3769 PF00890 FAD binding domain CH60_377 PF00005 ABC transporter CH60_3770 PF01266 FAD dependent oxidoreductase CH60_3770 PF04324 BFD-like [2Fe-2S] binding domain CH60_3771 PF03009 Glycerophosphoryl diester phosphodiesterase family CH60_3774 PF12146 Serine aminopeptidase, S33 CH60_3775 PF01810 LysE type translocator CH60_3776 PF01810 LysE type translocator CH60_3777 PF00270 DEAD/DEAH box helicase CH60_3777 PF00570 HRDC domain CH60_3777 PF16124 RecQ zinc-binding CH60_3777 PF09382 RQC domain CH60_3777 PF00271 Helicase conserved C-terminal domain CH60_3778 PF02253 Phospholipase A1 CH60_3779 PF03061 Thioesterase superfamily CH60_3780 PF00892 EamA-like transporter family CH60_3781 PF01544 CorA-like Mg2+ transporter protein CH60_3782 PF09370 Phosphoenolpyruvate hydrolase-like CH60_3785 PF13361 UvrD-like helicase C-terminal domain CH60_3785 PF00580 UvrD/REP helicase N-terminal domain CH60_3786 PF13419 Haloacid dehalogenase-like hydrolase CH60_3787 PF02899 Phage integrase, N-terminal SAM-like domain CH60_3787 PF00589 Phage integrase family CH60_3788 PF04340 Protein of unknown function, DUF484 CH60_3789 PF01678 Diaminopimelate epimerase CH60_3790 PF13627 Prokaryotic lipoprotein-attachment site CH60_3791 PF01491 Frataxin-like domain CH60_3792 PF01295 Adenylate cyclase, class-I CH60_3792 PF12633 Adenylate cyclase NT domain CH60_3793 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH60_3793 PF03900 Porphobilinogen deaminase, C-terminal domain CH60_3794 PF02602 Uroporphyrinogen-III synthase HemD CH60_3795 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CH60_3796 PF07719 Tetratricopeptide repeat CH60_3796 PF07219 HemY protein N-terminus CH60_3797 PF01797 Transposase IS200 like CH60_38 PF06917 Periplasmic pectate lyase CH60_380 PF00141 Peroxidase CH60_3803 PF00324 Amino acid permease CH60_3804 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH60_3805 PF06899 WzyE protein, O-antigen assembly polymerase CH60_3806 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CH60_3807 PF01943 Polysaccharide biosynthesis protein CH60_3808 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH60_381 PF07361 Cytochrome b562 CH60_3810 PF00483 Nucleotidyl transferase CH60_3811 PF16363 GDP-mannose 4,6 dehydratase CH60_3812 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH60_3812 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH60_3812 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH60_3813 PF02350 UDP-N-acetylglucosamine 2-epimerase CH60_3814 PF02706 Chain length determinant protein CH60_3815 PF00953 Glycosyl transferase family 4 CH60_3816 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH60_3816 PF07498 Rho termination factor, N-terminal domain CH60_3816 PF07497 Rho termination factor, RNA-binding domain CH60_3817 PF00085 Thioredoxin CH60_3818 PF00270 DEAD/DEAH box helicase CH60_3818 PF00271 Helicase conserved C-terminal domain CH60_3819 PF02541 Ppx/GppA phosphatase family CH60_382 PF01292 Prokaryotic cytochrome b561 CH60_3820 PF13361 UvrD-like helicase C-terminal domain CH60_3820 PF00580 UvrD/REP helicase N-terminal domain CH60_3824 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH60_3824 PF02753 Pili assembly chaperone PapD, C-terminal domain CH60_3825 PF00577 Outer membrane usher protein CH60_3825 PF13953 PapC C-terminal domain CH60_3825 PF13954 PapC N-terminal domain CH60_3827 PF02753 Pili assembly chaperone PapD, C-terminal domain CH60_3827 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH60_3828 PF01320 Colicin immunity protein / pyocin immunity protein CH60_383 PF02613 Nitrate reductase delta subunit CH60_3833 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH60_3833 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH60_3834 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_3834 PF03466 LysR substrate binding domain CH60_384 PF04976 DMSO reductase anchor subunit (DmsC) CH60_3840 PF00291 Pyridoxal-phosphate dependent enzyme CH60_3840 PF00585 C-terminal regulatory domain of Threonine dehydratase CH60_3841 PF00920 Dehydratase family CH60_3842 PF01063 Amino-transferase class IV CH60_3844 PF00205 Thiamine pyrophosphate enzyme, central domain CH60_3844 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH60_3844 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH60_3845 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH60_3845 PF01078 Magnesium chelatase, subunit ChlI CH60_3846 PF04219 Protein of unknown function, DUF CH60_3847 PF02653 Branched-chain amino acid transport system / permease component CH60_3848 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_3848 PF03466 LysR substrate binding domain CH60_3849 PF02653 Branched-chain amino acid transport system / permease component CH60_385 PF13247 4Fe-4S dicluster domain CH60_385 PF12800 4Fe-4S binding domain CH60_3850 PF00005 ABC transporter CH60_3851 PF13407 Periplasmic binding protein domain CH60_3859 PF01177 Asp/Glu/Hydantoin racemase CH60_386 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH60_386 PF01568 Molydopterin dinucleotide binding domain CH60_386 PF00384 Molybdopterin oxidoreductase CH60_3860 PF00593 TonB dependent receptor CH60_3860 PF07715 TonB-dependent Receptor Plug Domain CH60_3861 PF05958 tRNA (Uracil-5-)-methyltransferase CH60_3862 PF07226 Protein of unknown function (DUF1422) CH60_3863 PF00440 Bacterial regulatory proteins, tetR family CH60_3864 PF03466 LysR substrate binding domain CH60_3864 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_3865 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH60_3865 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH60_3866 PF00462 Glutaredoxin CH60_3866 PF08534 Redoxin CH60_3867 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH60_3867 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH60_3868 PF03544 Gram-negative bacterial TonB protein C-terminal CH60_3869 PF00529 HlyD membrane-fusion protein of T1SS CH60_387 PF00596 Class II Aldolase and Adducin N-terminal domain CH60_3870 PF00005 ABC transporter CH60_3870 PF00664 ABC transporter transmembrane region CH60_3872 PF00593 TonB dependent receptor CH60_3872 PF07715 TonB-dependent Receptor Plug Domain CH60_3874 PF14698 Argininosuccinate lyase C-terminal CH60_3874 PF00206 Lyase CH60_3875 PF00696 Amino acid kinase family CH60_3876 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH60_3876 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH60_3877 PF07687 Peptidase dimerisation domain CH60_3877 PF01546 Peptidase family M20/M25/M40 CH60_3878 PF00311 Phosphoenolpyruvate carboxylase CH60_388 PF08220 DeoR-like helix-turn-helix domain CH60_388 PF00455 DeoR C terminal sensor domain CH60_3880 PF13333 Integrase core domain CH60_3880 PF13276 HTH-like domain CH60_3880 PF00665 Integrase core domain CH60_3881 PF07690 Major Facilitator Superfamily CH60_3886 PF01526 Tn3 transposase DDE domain CH60_3886 PF13700 Domain of unknown function (DUF4158) CH60_3889 PF12390 Selenocysteine synthase N terminal CH60_3889 PF03841 L-seryl-tRNA selenium transferase CH60_3890 PF04216 Protein involved in formate dehydrogenase formation CH60_3891 PF01292 Prokaryotic cytochrome b561 CH60_3892 PF13247 4Fe-4S dicluster domain CH60_3892 PF09163 Formate dehydrogenase N, transmembrane CH60_3893 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH60_3893 PF00384 Molybdopterin oxidoreductase CH60_3893 PF01568 Molydopterin dinucleotide binding domain CH60_3894 PF00384 Molybdopterin oxidoreductase CH60_3894 PF01568 Molydopterin dinucleotide binding domain CH60_3894 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH60_3895 PF02634 FdhD/NarQ family CH60_3896 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH60_3896 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH60_3897 PF02203 Tar ligand binding domain homologue CH60_3897 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH60_3897 PF00672 HAMP domain CH60_39 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH60_390 PF00005 ABC transporter CH60_3901 PF10928 Protein of unknown function (DUF2810) CH60_3903 PF05068 Mannitol repressor CH60_3904 PF01232 Mannitol dehydrogenase Rossmann domain CH60_3904 PF08125 Mannitol dehydrogenase C-terminal domain CH60_3905 PF02378 Phosphotransferase system, EIIC CH60_3905 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH60_3905 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH60_3906 PF11254 Protein of unknown function (DUF3053) CH60_3907 PF05746 DALR anticodon binding domain CH60_3907 PF02092 Glycyl-tRNA synthetase beta subunit CH60_3908 PF02091 Glycyl-tRNA synthetase alpha subunit CH60_391 PF02653 Branched-chain amino acid transport system / permease component CH60_3910 PF03352 Methyladenine glycosylase CH60_3912 PF00691 OmpA family CH60_3912 PF13488 Glycine zipper CH60_3914 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH60_3914 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH60_3915 PF00128 Alpha amylase, catalytic domain CH60_3917 PF00155 Aminotransferase class I and II CH60_3918 PF06826 Predicted Permease Membrane Region CH60_3918 PF02080 TrkA-C domain CH60_3919 PF00011 Hsp20/alpha crystallin family CH60_392 PF02653 Branched-chain amino acid transport system / permease component CH60_3920 PF00011 Hsp20/alpha crystallin family CH60_3921 PF07119 Protein of unknown function (DUF1375) CH60_3922 PF12566 Protein of unknown function (DUF3748) CH60_3922 PF07676 WD40-like Beta Propeller Repeat CH60_3923 PF07676 WD40-like Beta Propeller Repeat CH60_3923 PF12566 Protein of unknown function (DUF3748) CH60_3924 PF00291 Pyridoxal-phosphate dependent enzyme CH60_3924 PF13291 ACT domain CH60_3925 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH60_3928 PF13276 HTH-like domain CH60_3928 PF13333 Integrase core domain CH60_3928 PF00665 Integrase core domain CH60_393 PF01261 Xylose isomerase-like TIM barrel CH60_3930 PF01751 Toprim domain CH60_3930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_3930 PF00986 DNA gyrase B subunit, carboxyl terminus CH60_3930 PF00204 DNA gyrase B CH60_3930 PF18053 DNA gyrase B subunit insert domain CH60_3931 PF02463 RecF/RecN/SMC N terminal domain CH60_3932 PF00712 DNA polymerase III beta subunit, N-terminal domain CH60_3932 PF02768 DNA polymerase III beta subunit, C-terminal domain CH60_3932 PF02767 DNA polymerase III beta subunit, central domain CH60_3933 PF00308 Bacterial dnaA protein CH60_3933 PF08299 Bacterial dnaA protein helix-turn-helix CH60_3933 PF11638 DnaA N-terminal domain CH60_3935 PF00468 Ribosomal protein L34 CH60_3936 PF00825 Ribonuclease P CH60_3937 PF01809 Putative membrane protein insertion efficiency factor CH60_3938 PF14849 YidC periplasmic domain CH60_3938 PF02096 60Kd inner membrane protein CH60_3939 PF01926 50S ribosome-binding GTPase CH60_3939 PF12631 MnmE helical domain CH60_3939 PF10396 GTP-binding protein TrmE N-terminus CH60_394 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH60_394 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH60_3940 PF07055 Enoyl reductase FAD binding domain CH60_3940 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH60_3940 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH60_3943 PF00860 Permease family CH60_3944 PF13419 Haloacid dehalogenase-like hydrolase CH60_3945 PF00528 Binding-protein-dependent transport system inner membrane component CH60_3946 PF00528 Binding-protein-dependent transport system inner membrane component CH60_3947 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH60_3949 PF01895 PhoU domain CH60_395 PF05683 Fumarase C-terminus CH60_395 PF05681 Fumarate hydratase (Fumerase) CH60_3950 PF00005 ABC transporter CH60_3951 PF00528 Binding-protein-dependent transport system inner membrane component CH60_3952 PF00528 Binding-protein-dependent transport system inner membrane component CH60_3953 PF12849 PBP superfamily domain CH60_3954 PF01380 SIS domain CH60_3955 PF00132 Bacterial transferase hexapeptide (six repeats) CH60_3955 PF12804 MobA-like NTP transferase domain CH60_3956 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH60_3956 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH60_3957 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH60_3957 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH60_3958 PF00231 ATP synthase CH60_3959 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH60_3959 PF00306 ATP synthase alpha/beta chain, C terminal domain CH60_3959 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH60_3960 PF00213 ATP synthase delta (OSCP) subunit CH60_3961 PF00430 ATP synthase B/B' CF(0) CH60_3962 PF00137 ATP synthase subunit C CH60_3963 PF00119 ATP synthase A chain CH60_3964 PF03899 ATP synthase I chain CH60_3965 PF02527 rRNA small subunit methyltransferase G CH60_3966 PF01134 Glucose inhibited division protein A CH60_3966 PF13932 GidA associated domain CH60_3967 PF00258 Flavodoxin CH60_3968 PF01037 Lrp/AsnC ligand binding domain CH60_3969 PF03590 Aspartate-ammonia ligase CH60_397 PF00557 Metallopeptidase family M24 CH60_3970 PF05762 VWA domain containing CoxE-like protein CH60_3971 PF07728 AAA domain (dynein-related subfamily) CH60_3971 PF17868 AAA lid domain CH60_3971 PF12592 Protein of unknown function (DUF3763) CH60_3972 PF02705 K+ potassium transporter CH60_3973 PF05025 RbsD / FucU transport protein family CH60_3974 PF00294 pfkB family carbohydrate kinase CH60_3975 PF07690 Major Facilitator Superfamily CH60_3977 PF00392 Bacterial regulatory proteins, gntR family CH60_3977 PF07729 FCD domain CH60_3982 PF00872 Transposase, Mutator family CH60_3983 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH60_3984 PF12804 MobA-like NTP transferase domain CH60_3985 PF06288 Protein of unknown function (DUF1040) CH60_3986 PF01636 Phosphotransferase enzyme family CH60_3987 PF01323 DSBA-like thioredoxin domain CH60_3988 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH60_3988 PF01367 5'-3' exonuclease, C-terminal SAM fold CH60_3988 PF01612 3'-5' exonuclease CH60_3988 PF00476 DNA polymerase family A CH60_3989 PF01926 50S ribosome-binding GTPase CH60_399 PF07715 TonB-dependent Receptor Plug Domain CH60_399 PF00593 TonB dependent receptor CH60_3990 PF04220 Der GTPase activator (YihI) CH60_3991 PF04055 Radical SAM superfamily CH60_3991 PF06969 HemN C-terminal domain CH60_3992 PF02954 Bacterial regulatory protein, Fis family CH60_3992 PF00072 Response regulator receiver domain CH60_3992 PF00158 Sigma-54 interaction domain CH60_3993 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_3993 PF00512 His Kinase A (phospho-acceptor) domain CH60_3993 PF00989 PAS fold CH60_3994 PF03951 Glutamine synthetase, beta-Grasp domain CH60_3994 PF00120 Glutamine synthetase, catalytic domain CH60_3996 PF13419 Haloacid dehalogenase-like hydrolase CH60_3997 PF03631 Virulence factor BrkB CH60_3998 PF02580 D-Tyr-tRNA(Tyr) deacylase CH60_3999 PF01695 IstB-like ATP binding protein CH60_4 PF01116 Fructose-bisphosphate aldolase class-II CH60_40 PF17154 Gammaproteobacterial periplasmic sensor domain CH60_40 PF00672 HAMP domain CH60_40 PF00990 Diguanylate cyclase, GGDEF domain CH60_40 PF00563 EAL domain CH60_4000 PF00665 Integrase core domain CH60_4000 PF02796 Helix-turn-helix domain of resolvase CH60_4001 PF09500 Putative thioesterase (yiiD_Cterm) CH60_4001 PF00583 Acetyltransferase (GNAT) family CH60_4002 PF05170 AsmA family CH60_4003 PF00860 Permease family CH60_4004 PF03616 Sodium/glutamate symporter CH60_4005 PF00271 Helicase conserved C-terminal domain CH60_4005 PF17191 RecG wedge domain CH60_4005 PF00270 DEAD/DEAH box helicase CH60_4006 PF12105 SpoU, rRNA methylase, C-terminal CH60_4006 PF00588 SpoU rRNA Methylase family CH60_4007 PF04607 Region found in RelA / SpoT proteins CH60_4007 PF13291 ACT domain CH60_4007 PF02824 TGS domain CH60_4008 PF01192 RNA polymerase Rpb6 CH60_4009 PF00625 Guanylate kinase CH60_401 PF00872 Transposase, Mutator family CH60_4010 PF03120 NAD-dependent DNA ligase OB-fold domain CH60_4010 PF01653 NAD-dependent DNA ligase adenylation domain CH60_4011 PF03458 UPF0126 domain CH60_4012 PF03755 YicC-like family, N-terminal region CH60_4012 PF08340 Domain of unknown function (DUF1732) CH60_4013 PF01138 3' exoribonuclease family, domain 1 CH60_4013 PF03725 3' exoribonuclease family, domain 2 CH60_4014 PF00156 Phosphoribosyl transferase domain CH60_4015 PF00440 Bacterial regulatory proteins, tetR family CH60_4016 PF00692 dUTPase CH60_4017 PF04127 DNA / pantothenate metabolism flavoprotein CH60_4017 PF02441 Flavoprotein CH60_4018 PF04002 RadC-like JAB domain CH60_4019 PF00830 Ribosomal L28 family CH60_402 PF00872 Transposase, Mutator family CH60_4020 PF00471 Ribosomal protein L33 CH60_4021 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH60_4021 PF06827 Zinc finger found in FPG and IleRS CH60_4021 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH60_4022 PF01467 Cytidylyltransferase-like CH60_4023 PF00535 Glycosyl transferase family 2 CH60_4024 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH60_4025 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH60_4026 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH60_4027 PF01370 NAD dependent epimerase/dehydratase family CH60_4028 PF00155 Aminotransferase class I and II CH60_4029 PF00107 Zinc-binding dehydrogenase CH60_4029 PF08240 Alcohol dehydrogenase GroES-like domain CH60_403 PF14376 Haem-binding domain CH60_403 PF03150 Di-haem cytochrome c peroxidase CH60_403 PF00034 Cytochrome c CH60_4030 PF04748 Divergent polysaccharide deacetylase CH60_4031 PF04748 Divergent polysaccharide deacetylase CH60_4032 PF01551 Peptidase family M23 CH60_4033 PF01676 Metalloenzyme superfamily CH60_4033 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH60_4034 PF00581 Rhodanese-like domain CH60_4035 PF00462 Glutaredoxin CH60_4036 PF02556 Preprotein translocase subunit SecB CH60_4037 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH60_4037 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH60_4038 PF00132 Bacterial transferase hexapeptide (six repeats) CH60_4038 PF06426 Serine acetyltransferase, N-terminal CH60_4039 PF00588 SpoU rRNA Methylase family CH60_404 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH60_4040 PF02805 Metal binding domain of Ada CH60_4040 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH60_4040 PF12833 Helix-turn-helix domain CH60_4040 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH60_4041 PF00672 HAMP domain CH60_4041 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_4041 PF00512 His Kinase A (phospho-acceptor) domain CH60_4041 PF16527 Two-component sensor protein CpxA, periplasmic domain CH60_4042 PF00072 Response regulator receiver domain CH60_4042 PF00486 Transcriptional regulatory protein, C terminal CH60_4043 PF07813 LTXXQ motif family protein CH60_4044 PF04754 Putative transposase, YhgA-like CH60_4045 PF16916 Dimerisation domain of Zinc Transporter CH60_4045 PF01545 Cation efflux family CH60_4046 PF00365 Phosphofructokinase CH60_4050 PF00939 Sodium:sulfate symporter transmembrane region CH60_4051 PF03737 Aldolase/RraA CH60_4052 PF02585 GlcNAc-PI de-N-acetylase CH60_4053 PF03466 LysR substrate binding domain CH60_4053 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH60_4054 PF00121 Triosephosphate isomerase CH60_4055 PF07305 Protein of unknown function (DUF1454) CH60_4056 PF05656 Protein of unknown function (DUF805) CH60_4057 PF00175 Oxidoreductase NAD-binding domain CH60_4057 PF00970 Oxidoreductase FAD-binding domain CH60_4058 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH60_4059 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH60_4059 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH60_4060 PF00230 Major intrinsic protein CH60_4061 PF06005 Cell division protein ZapB CH60_4062 PF01797 Transposase IS200 like CH60_4063 PF03412 Peptidase C39 family CH60_4063 PF00664 ABC transporter transmembrane region CH60_4063 PF00005 ABC transporter CH60_4064 PF00529 HlyD membrane-fusion protein of T1SS CH60_4064 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH60_4067 PF03737 Aldolase/RraA CH60_4068 PF01040 UbiA prenyltransferase family CH60_4069 PF10431 C-terminal, D2-small domain, of ClpB protein CH60_4069 PF07724 AAA domain (Cdc48 subfamily) CH60_4069 PF00004 ATPase family associated with various cellular activities (AAA) CH60_407 PF01022 Bacterial regulatory protein, arsR family CH60_4070 PF00227 Proteasome subunit CH60_4071 PF05036 Sporulation related domain CH60_4072 PF00356 Bacterial regulatory proteins, lacI family CH60_4074 PF00270 DEAD/DEAH box helicase CH60_4074 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH60_4074 PF00271 Helicase conserved C-terminal domain CH60_4074 PF17764 3′ DNA-binding domain (3′BD) CH60_4074 PF18074 Primosomal protein N C-terminal domain CH60_4075 PF01197 Ribosomal protein L31 CH60_4076 PF05360 yiaA/B two helix domain CH60_4077 PF01340 Met Apo-repressor, MetJ CH60_4078 PF01053 Cys/Met metabolism PLP-dependent enzyme CH60_4079 PF00696 Amino acid kinase family CH60_4079 PF03447 Homoserine dehydrogenase, NAD binding domain CH60_4079 PF00742 Homoserine dehydrogenase CH60_408 PF02040 Arsenical pump membrane protein CH60_4080 PF02219 Methylenetetrahydrofolate reductase CH60_4081 PF13333 Integrase core domain CH60_4081 PF00665 Integrase core domain CH60_4081 PF13276 HTH-like domain CH60_4083 PF01757 Acyltransferase family CH60_4084 PF00419 Fimbrial protein CH60_4085 PF13954 PapC N-terminal domain CH60_4085 PF13953 PapC C-terminal domain CH60_4085 PF00577 Outer membrane usher protein CH60_4086 PF13954 PapC N-terminal domain CH60_4086 PF13953 PapC C-terminal domain CH60_4086 PF00577 Outer membrane usher protein CH60_4087 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH60_4087 PF02753 Pili assembly chaperone PapD, C-terminal domain CH60_4089 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH60_4089 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH60_409 PF13936 Helix-turn-helix domain CH60_409 PF04198 Putative sugar-binding domain CH60_4091 PF13407 Periplasmic binding protein domain CH60_4092 PF00005 ABC transporter CH60_4093 PF02653 Branched-chain amino acid transport system / permease component CH60_4094 PF12833 Helix-turn-helix domain CH60_4096 PF00589 Phage integrase family CH60_4096 PF13356 Arm DNA-binding domain CH60_4096 PF14659 Phage integrase, N-terminal SAM-like domain CH60_4098 PF04606 Ogr/Delta-like zinc finger CH60_4099 PF13737 Transposase DDE domain CH60_41 PF01270 Glycosyl hydrolases family 8 CH60_410 PF02734 DAK2 domain CH60_4100 PF13737 Transposase DDE domain CH60_4103 PF00005 ABC transporter CH60_4105 PF01032 FecCD transport family CH60_4106 PF01032 FecCD transport family CH60_4107 PF01497 Periplasmic binding protein CH60_411 PF02733 Dak1 domain CH60_4110 PF00156 Phosphoribosyl transferase domain CH60_4111 PF00291 Pyridoxal-phosphate dependent enzyme CH60_4112 PF17392 Urocanase C-terminal domain CH60_4112 PF01175 Urocanase Rossmann-like domain CH60_4112 PF17391 Urocanase N-terminal domain CH60_4113 PF00221 Aromatic amino acid lyase CH60_4114 PF00324 Amino acid permease CH60_4115 PF02796 Helix-turn-helix domain of resolvase CH60_4115 PF00665 Integrase core domain CH60_4116 PF01695 IstB-like ATP binding protein CH60_4117 PF01026 TatD related DNase CH60_4118 PF00490 Delta-aminolevulinic acid dehydratase CH60_4119 PF02357 Transcription termination factor nusG CH60_4120 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH60_4121 PF00175 Oxidoreductase NAD-binding domain CH60_4121 PF00970 Oxidoreductase FAD-binding domain CH60_4122 PF02803 Thiolase, C-terminal domain CH60_4122 PF00108 Thiolase, N-terminal domain CH60_4123 PF00378 Enoyl-CoA hydratase/isomerase CH60_4123 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH60_4123 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH60_4124 PF00557 Metallopeptidase family M24 CH60_4125 PF09186 Domain of unknown function (DUF1949) CH60_4125 PF01205 Uncharacterized protein family UPF0029 CH60_4126 PF02386 Cation transport protein CH60_4127 PF12724 Flavodoxin domain CH60_413 PF08240 Alcohol dehydrogenase GroES-like domain CH60_413 PF00107 Zinc-binding dehydrogenase CH60_4132 PF01565 FAD binding domain CH60_4132 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH60_4133 PF02237 Biotin protein ligase C terminal domain CH60_4133 PF03099 Biotin/lipoate A/B protein ligase family CH60_4133 PF08279 HTH domain CH60_4134 PF00485 Phosphoribulokinase / Uridine kinase family CH60_4135 PF13673 Acetyltransferase (GNAT) domain CH60_4136 PF00665 Integrase core domain CH60_4136 PF02796 Helix-turn-helix domain of resolvase CH60_4137 PF01695 IstB-like ATP binding protein CH60_4138 PF13333 Integrase core domain CH60_4138 PF00665 Integrase core domain CH60_4138 PF13276 HTH-like domain CH60_414 PF02502 Ribose/Galactose Isomerase CH60_4141 PF01266 FAD dependent oxidoreductase CH60_4141 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH60_4142 PF00343 Carbohydrate phosphorylase CH60_4143 PF00534 Glycosyl transferases group 1 CH60_4143 PF08323 Starch synthase catalytic domain CH60_4144 PF00483 Nucleotidyl transferase CH60_4145 PF00128 Alpha amylase, catalytic domain CH60_4145 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH60_4145 PF18390 Glycogen debranching enzyme C-terminal domain CH60_4146 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH60_4146 PF00128 Alpha amylase, catalytic domain CH60_4146 PF02806 Alpha amylase, C-terminal all-beta domain CH60_4147 PF07694 5TMR of 5TMR-LYT CH60_4147 PF06580 Histidine kinase CH60_4148 PF09134 Invasin, domain 3 CH60_4148 PF11924 Inverse autotransporter, beta-domain CH60_4148 PF02369 Bacterial Ig-like domain (group 1) CH60_4148 PF07979 Intimin C-type lectin domain CH60_415 PF01624 MutS domain I CH60_415 PF05190 MutS family domain IV CH60_415 PF05192 MutS domain III CH60_415 PF05188 MutS domain II CH60_415 PF00488 MutS domain V CH60_4153 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH60_4153 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH60_4154 PF01914 MarC family integral membrane protein CH60_4158 PF01202 Shikimate kinase CH60_4159 PF02447 GntP family permease CH60_416 PF04545 Sigma-70, region 4 CH60_416 PF04539 Sigma-70 region 3 CH60_416 PF04542 Sigma-70 region 2 CH60_416 PF00140 Sigma-70 factor, region 1.2 CH60_4160 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH60_4160 PF00356 Bacterial regulatory proteins, lacI family CH60_417 PF01551 Peptidase family M23 CH60_417 PF01476 LysM domain CH60_4182 PF00664 ABC transporter transmembrane region CH60_4182 PF00005 ABC transporter CH60_4182 PF03412 Peptidase C39 family CH60_4183 PF17762 HTH domain found in ParB protein CH60_4183 PF02195 ParB-like nuclease domain CH60_4184 PF17762 HTH domain found in ParB protein CH60_4184 PF02195 ParB-like nuclease domain CH60_4185 PF17191 RecG wedge domain CH60_4185 PF00270 DEAD/DEAH box helicase CH60_4185 PF00271 Helicase conserved C-terminal domain CH60_419 PF01975 Survival protein SurE CH60_4194 PF01797 Transposase IS200 like CH60_4196 PF00268 Ribonucleotide reductase, small chain CH60_4197 PF02867 Ribonucleotide reductase, barrel domain CH60_4197 PF00317 Ribonucleotide reductase, all-alpha domain CH60_4197 PF03477 ATP cone domain CH60_42 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH60_42 PF00005 ABC transporter CH60_420 PF01142 tRNA pseudouridine synthase D (TruD) CH60_4205 PF01051 Initiator Replication protein CH60_421 PF02542 YgbB family CH60_4213 PF00154 recA bacterial DNA recombination protein CH60_4215 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH60_4215 PF01367 5'-3' exonuclease, C-terminal SAM fold CH60_422 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH60_4221 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH60_4221 PF14579 Helix-hairpin-helix motif CH60_4221 PF02811 PHP domain CH60_4221 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH60_4222 PF02796 Helix-turn-helix domain of resolvase CH60_4222 PF00665 Integrase core domain CH60_4223 PF02796 Helix-turn-helix domain of resolvase CH60_4223 PF00665 Integrase core domain CH60_4224 PF01695 IstB-like ATP binding protein CH60_4225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH60_4225 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH60_4225 PF14579 Helix-hairpin-helix motif CH60_4225 PF02811 PHP domain CH60_4227 PF11775 Cobalamin biosynthesis protein CobT VWA domain CH60_4227 PF06213 Cobalamin biosynthesis protein CobT CH60_423 PF04977 Septum formation initiator CH60_4231 PF09255 Caf1 Capsule antigen CH60_4232 PF13954 PapC N-terminal domain CH60_4232 PF13953 PapC C-terminal domain CH60_4232 PF00577 Outer membrane usher protein CH60_4233 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH60_4233 PF02753 Pili assembly chaperone PapD, C-terminal domain CH60_4234 PF06445 GyrI-like small molecule binding domain CH60_4234 PF12833 Helix-turn-helix domain CH60_424 PF12084 Protein of unknown function (DUF3561) CH60_4242 PF01695 IstB-like ATP binding protein CH60_4243 PF00665 Integrase core domain CH60_4243 PF02796 Helix-turn-helix domain of resolvase CH60_4244 PF02195 ParB-like nuclease domain CH60_4245 PF06006 Bacterial protein of unknown function (DUF905) CH60_4248 PF07128 Protein of unknown function (DUF1380) CH60_4250 PF01555 DNA methylase CH60_4253 PF02195 ParB-like nuclease domain CH60_4253 PF08775 ParB family CH60_4254 PF18607 ParA helix turn helix domain CH60_4254 PF13614 AAA domain CH60_4257 PF02796 Helix-turn-helix domain of resolvase CH60_4257 PF00239 Resolvase, N terminal domain CH60_4258 PF04754 Putative transposase, YhgA-like CH60_426 PF00009 Elongation factor Tu GTP binding domain CH60_4261 PF02371 Transposase IS116/IS110/IS902 family CH60_4261 PF01548 Transposase CH60_4262 PF00872 Transposase, Mutator family CH60_4265 PF00665 Integrase core domain CH60_4265 PF02796 Helix-turn-helix domain of resolvase CH60_4266 PF01695 IstB-like ATP binding protein CH60_4267 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH60_4269 PF03335 Phage tail fibre repeat CH60_4269 PF03335 Phage tail fibre repeat CH60_4269 PF08400 Prophage tail fibre N-terminal CH60_4269 PF07484 Phage Tail Collar Domain CH60_4269 PF08400 Prophage tail fibre N-terminal CH60_4269 PF07484 Phage Tail Collar Domain CH60_427 PF01507 Phosphoadenosine phosphosulfate reductase family CH60_4273 PF07201 HrpJ-like domain CH60_4274 PF18269 T3SS EscN ATPase C-terminal domain CH60_4274 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH60_4274 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH60_4275 PF07321 Type III secretion protein YscO CH60_4276 PF02120 Flagellar hook-length control protein FliK CH60_4277 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH60_4278 PF00813 FliP family CH60_4279 PF01313 Bacterial export proteins, family 3 CH60_428 PF10414 Sirohaem synthase dimerisation region CH60_428 PF14824 Sirohaem biosynthesis protein central CH60_428 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH60_4280 PF01311 Bacterial export proteins, family 1 CH60_4281 PF01312 FlhB HrpN YscU SpaS Family CH60_4283 PF02311 AraC-like ligand binding domain CH60_4283 PF12833 Helix-turn-helix domain CH60_4284 PF05932 Tir chaperone protein (CesT) family CH60_4286 PF16697 Inner membrane component of T3SS, cytoplasmic domain CH60_4286 PF16693 Inner membrane component of T3SS, periplasmic domain CH60_4287 PF08988 Type III secretion system, cytoplasmic E component of needle CH60_4288 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF CH60_4289 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) CH60_4290 PF09025 YopR, type III needle-polymerisation regulator CH60_4291 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI CH60_4292 PF01514 Secretory protein of YscJ/FliF family CH60_4293 PF06578 YOP proteins translocation protein K (YscK) CH60_4294 PF02108 Flagellar assembly protein FliH CH60_4295 PF09013 YopH, N-terminal CH60_4296 PF01527 Transposase CH60_4298 PF13683 Integrase core domain CH60_4298 PF13276 HTH-like domain CH60_4299 PF00102 Protein-tyrosine phosphatase CH60_4299 PF09013 YopH, N-terminal CH60_43 PF00005 ABC transporter CH60_43 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH60_4300 PF13683 Integrase core domain CH60_4300 PF13276 HTH-like domain CH60_4302 PF09632 Rac1-binding domain CH60_4302 PF00069 Protein kinase domain CH60_4308 PF02387 IncFII RepA protein family CH60_4309 PF10723 Replication regulatory protein RepB CH60_4315 PF05658 Head domain of trimeric autotransporter adhesin CH60_4315 PF05662 Coiled stalk of trimeric autotransporter adhesin CH60_4315 PF03895 YadA-like membrane anchor domain CH60_4317 PF05658 Head domain of trimeric autotransporter adhesin CH60_4317 PF03895 YadA-like membrane anchor domain CH60_4317 PF05662 Coiled stalk of trimeric autotransporter adhesin CH60_4318 PF13700 Domain of unknown function (DUF4158) CH60_4318 PF01526 Tn3 transposase DDE domain CH60_432 PF01507 Phosphoadenosine phosphosulfate reductase family CH60_4320 PF02796 Helix-turn-helix domain of resolvase CH60_4320 PF00239 Resolvase, N terminal domain CH60_4323 PF01527 Transposase CH60_4324 PF13683 Integrase core domain CH60_4324 PF13276 HTH-like domain CH60_4326 PF01695 IstB-like ATP binding protein CH60_4328 PF01695 IstB-like ATP binding protein CH60_433 PF01507 Phosphoadenosine phosphosulfate reductase family CH60_4330 PF00665 Integrase core domain CH60_4330 PF02796 Helix-turn-helix domain of resolvase CH60_4332 PF00665 Integrase core domain CH60_4333 PF13683 Integrase core domain CH60_4333 PF13276 HTH-like domain CH60_4334 PF05932 Tir chaperone protein (CesT) family CH60_4335 PF09020 YopE, N terminal CH60_4335 PF03545 Yersinia virulence determinant (YopE) CH60_4337 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CH60_4339 PF02195 ParB-like nuclease domain CH60_4339 PF18090 Centromere-binding protein HTH domain CH60_434 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH60_434 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH60_4340 PF13614 AAA domain CH60_4343 PF13333 Integrase core domain CH60_4343 PF00665 Integrase core domain CH60_4343 PF13276 HTH-like domain CH60_4345 PF05818 Enterobacterial TraT complement resistance protein CH60_4347 PF03543 Yersinia/Haemophilus virulence surface antigen CH60_4348 PF05932 Tir chaperone protein (CesT) family CH60_435 PF00175 Oxidoreductase NAD-binding domain CH60_435 PF00667 FAD binding domain CH60_435 PF00258 Flavodoxin CH60_4352 PF12468 Type III secretion system leucine rich repeat protein CH60_4352 PF12468 Type III secretion system leucine rich repeat protein CH60_4354 PF13610 DDE domain CH60_4355 PF05844 YopD protein CH60_4356 PF04888 Secretion system effector C (SseC) like family CH60_4357 PF07720 Tetratricopeptide repeat CH60_4358 PF04792 V antigen (LcrV) protein CH60_4359 PF07216 LcrG protein CH60_436 PF01242 6-pyruvoyl tetrahydropterin synthase CH60_4360 PF09621 Type III secretion system regulator (LcrR) CH60_4361 PF00771 FHIPEP family CH60_4363 PF09474 Type III secretion system YscX (type_III_YscX) CH60_4365 PF01695 IstB-like ATP binding protein CH60_4367 PF02796 Helix-turn-helix domain of resolvase CH60_4367 PF00665 Integrase core domain CH60_4368 PF05973 Phage derived protein Gp49-like (DUF891) CH60_437 PF04055 Radical SAM superfamily CH60_4370 PF01278 Omptin family CH60_4374 PF01815 Rop protein CH60_438 PF00080 Copper/zinc superoxide dismutase (SODC) CH60_439 PF00113 Enolase, C-terminal TIM barrel domain CH60_439 PF03952 Enolase, N-terminal domain CH60_44 PF00528 Binding-protein-dependent transport system inner membrane component CH60_44 PF12911 N-terminal TM domain of oligopeptide transport permease C CH60_440 PF06418 CTP synthase N-terminus CH60_440 PF00117 Glutamine amidotransferase class-I CH60_441 PF03819 MazG nucleotide pyrophosphohydrolase domain CH60_442 PF13291 ACT domain CH60_442 PF02824 TGS domain CH60_442 PF04607 Region found in RelA / SpoT proteins CH60_443 PF00512 His Kinase A (phospho-acceptor) domain CH60_443 PF00672 HAMP domain CH60_443 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_443 PF01627 Hpt domain CH60_443 PF00072 Response regulator receiver domain CH60_443 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH60_444 PF00595 PDZ domain CH60_445 PF13286 Phosphohydrolase-associated domain CH60_445 PF01966 HD domain CH60_446 PF01048 Phosphorylase superfamily CH60_447 PF01497 Periplasmic binding protein CH60_448 PF03458 UPF0126 domain CH60_449 PF01521 Iron-sulphur cluster biosynthesis CH60_45 PF00528 Binding-protein-dependent transport system inner membrane component CH60_450 PF00654 Voltage gated chloride channel CH60_451 PF00202 Aminotransferase class-III CH60_452 PF01032 FecCD transport family CH60_453 PF01497 Periplasmic binding protein CH60_454 PF00005 ABC transporter CH60_455 PF00905 Penicillin binding protein transpeptidase domain CH60_455 PF14814 Bifunctional transglycosylase second domain CH60_455 PF00912 Transglycosylase CH60_455 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CH60_456 PF04408 Helicase associated domain (HA2) CH60_456 PF08482 ATP-dependent helicase C-terminal CH60_456 PF00271 Helicase conserved C-terminal domain CH60_456 PF00270 DEAD/DEAH box helicase CH60_457 PF02834 LigT like Phosphoesterase CH60_458 PF03749 Sugar fermentation stimulation protein RE domain CH60_458 PF17746 SfsA N-terminal OB domain CH60_459 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH60_46 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH60_460 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH60_461 PF01743 Poly A polymerase head domain CH60_461 PF12626 Polymerase A arginine-rich C-terminus CH60_461 PF12627 Probable RNA and SrmB- binding site of polymerase A CH60_462 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH60_463 PF02548 Ketopantoate hydroxymethyltransferase CH60_464 PF02569 Pantoate-beta-alanine ligase CH60_465 PF02261 Aspartate decarboxylase CH60_466 PF01522 Polysaccharide deacetylase CH60_468 PF01061 ABC-2 type transporter CH60_469 PF00005 ABC transporter CH60_470 PF00484 Carbonic anhydrase CH60_471 PF00156 Phosphoribosyl transferase domain CH60_472 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH60_472 PF07732 Multicopper oxidase CH60_472 PF00394 Multicopper oxidase CH60_472 PF07731 Multicopper oxidase CH60_473 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CH60_474 PF17284 Spermidine synthase tetramerisation domain CH60_475 PF02675 S-adenosylmethionine decarboxylase CH60_476 PF00892 EamA-like transporter family CH60_477 PF06062 Uncharacterised protein family (UPF0231) CH60_478 PF00330 Aconitase family (aconitate hydratase) CH60_478 PF06434 Aconitate hydratase 2 N-terminus CH60_478 PF11791 Aconitate B N-terminal domain CH60_479 PF01797 Transposase IS200 like CH60_48 PF08479 POTRA domain, ShlB-type CH60_48 PF17287 POTRA domain CH60_48 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH60_480 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH60_480 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH60_481 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH60_481 PF00364 Biotin-requiring enzyme CH60_481 PF02817 e3 binding domain CH60_482 PF00456 Transketolase, thiamine diphosphate binding domain CH60_482 PF17831 Pyruvate dehydrogenase E1 component middle domain CH60_483 PF00392 Bacterial regulatory proteins, gntR family CH60_483 PF07729 FCD domain CH60_484 PF00324 Amino acid permease CH60_485 PF17113 Regulatory signalling modulator protein AmpE CH60_486 PF01510 N-acetylmuramoyl-L-alanine amidase CH60_487 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH60_487 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH60_488 PF07963 Prokaryotic N-terminal methylation motif CH60_489 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH60_489 PF00437 Type II/IV secretion system protein CH60_49 PF05594 Haemagluttinin repeat CH60_49 PF13332 Hemagglutinin repeat CH60_49 PF05860 haemagglutination activity domain CH60_49 PF04829 Pre-toxin domain with VENN motif CH60_490 PF00482 Type II secretion system (T2SS), protein F CH60_491 PF00478 IMP dehydrogenase / GMP reductase domain CH60_492 PF01121 Dephospho-CoA kinase CH60_493 PF07072 Cell division protein CH60_494 PF03884 DNA gyrase inhibitor YacG CH60_495 PF01797 Transposase IS200 like CH60_496 PF02796 Helix-turn-helix domain of resolvase CH60_496 PF00665 Integrase core domain CH60_497 PF01695 IstB-like ATP binding protein CH60_498 PF01797 Transposase IS200 like CH60_500 PF04225 Opacity-associated protein A LysM-like domain CH60_500 PF08525 Opacity-associated protein A N-terminal motif CH60_501 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH60_501 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH60_502 PF01814 Hemerythrin HHE cation binding domain CH60_502 PF04405 Domain of Unknown function (DUF542) CH60_503 PF02872 5'-nucleotidase, C-terminal domain CH60_503 PF00149 Calcineurin-like phosphoesterase CH60_504 PF00459 Inositol monophosphatase family CH60_505 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CH60_506 PF06526 Protein of unknown function (DUF1107) CH60_507 PF01595 Cyclin M transmembrane N-terminal domain CH60_507 PF00571 CBS domain CH60_507 PF03471 Transporter associated domain CH60_508 PF01625 Peptide methionine sulfoxide reductase CH60_509 PF17243 POTRA domain TamA domain 1 CH60_509 PF07244 Surface antigen variable number repeat CH60_509 PF01103 Surface antigen CH60_51 PF07690 Major Facilitator Superfamily CH60_510 PF04357 TamB, inner membrane protein subunit of TAM complex CH60_511 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CH60_512 PF00719 Inorganic pyrophosphatase CH60_513 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH60_514 PF08245 Mur ligase middle domain CH60_514 PF02875 Mur ligase family, glutamate ligase domain CH60_514 PF01225 Mur ligase family, catalytic domain CH60_516 PF02863 Arginine repressor, C-terminal domain CH60_516 PF01316 Arginine repressor, DNA binding domain CH60_517 PF00056 lactate/malate dehydrogenase, NAD binding domain CH60_517 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH60_518 PF13693 Winged helix-turn-helix DNA-binding CH60_52 PF07730 Histidine kinase CH60_52 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_52 PF05231 MASE1 CH60_520 PF00348 Polyprenyl synthetase CH60_521 PF00829 Ribosomal prokaryotic L21 protein CH60_522 PF01016 Ribosomal L27 protein CH60_523 PF00892 EamA-like transporter family CH60_524 PF01926 50S ribosome-binding GTPase CH60_524 PF01018 GTP1/OBG CH60_525 PF00672 HAMP domain CH60_525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_525 PF00512 His Kinase A (phospho-acceptor) domain CH60_526 PF00072 Response regulator receiver domain CH60_526 PF00486 Transcriptional regulatory protein, C terminal CH60_527 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH60_528 PF01272 Transcription elongation factor, GreA/GreB, C-term CH60_528 PF03449 Transcription elongation factor, N-terminal CH60_529 PF01985 CRS1 / YhbY (CRM) domain CH60_53 PF00196 Bacterial regulatory proteins, luxR family CH60_53 PF00072 Response regulator receiver domain CH60_530 PF01728 FtsJ-like methyltransferase CH60_531 PF00004 ATPase family associated with various cellular activities (AAA) CH60_531 PF06480 FtsH Extracellular CH60_531 PF17862 AAA+ lid domain CH60_531 PF01434 Peptidase family M41 CH60_532 PF00809 Pterin binding enzyme CH60_533 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH60_533 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH60_533 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH60_533 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH60_534 PF03840 Preprotein translocase SecG subunit CH60_537 PF17384 RimP C-terminal SH3 domain CH60_537 PF02576 RimP N-terminal domain CH60_538 PF13184 NusA-like KH domain CH60_538 PF00575 S1 RNA binding domain CH60_538 PF08529 NusA N-terminal domain CH60_539 PF04760 Translation initiation factor IF-2, N-terminal region CH60_539 PF08364 Bacterial translation initiation factor IF-2 associated region CH60_539 PF11987 Translation-initiation factor 2 CH60_539 PF03144 Elongation factor Tu domain 2 CH60_539 PF00009 Elongation factor Tu GTP binding domain CH60_54 PF08019 Phosphoethanolamine transferase EptA/EptB CH60_54 PF00884 Sulfatase CH60_540 PF02033 Ribosome-binding factor A CH60_541 PF09157 Pseudouridine synthase II TruB, C-terminal CH60_541 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH60_541 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH60_542 PF00312 Ribosomal protein S15 CH60_544 PF00665 Integrase core domain CH60_544 PF13276 HTH-like domain CH60_544 PF13333 Integrase core domain CH60_545 PF03725 3' exoribonuclease family, domain 2 CH60_545 PF00575 S1 RNA binding domain CH60_545 PF01138 3' exoribonuclease family, domain 1 CH60_545 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH60_545 PF00013 KH domain CH60_546 PF07719 Tetratricopeptide repeat CH60_546 PF13181 Tetratricopeptide repeat CH60_547 PF00271 Helicase conserved C-terminal domain CH60_547 PF00270 DEAD/DEAH box helicase CH60_547 PF03880 DbpA RNA binding domain CH60_547 PF12343 Cold shock protein DEAD box A CH60_549 PF01381 Helix-turn-helix CH60_55 PF12146 Serine aminopeptidase, S33 CH60_550 PF00296 Luciferase-like monooxygenase CH60_552 PF00529 HlyD membrane-fusion protein of T1SS CH60_552 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH60_553 PF00873 AcrB/AcrD/AcrF family CH60_554 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH60_554 PF02321 Outer membrane efflux protein CH60_558 PF13508 Acetyltransferase (GNAT) domain CH60_559 PF01541 GIY-YIG catalytic domain CH60_56 PF00324 Amino acid permease CH60_562 PF13416 Bacterial extracellular solute-binding protein CH60_564 PF00528 Binding-protein-dependent transport system inner membrane component CH60_569 PF13460 NAD(P)H-binding CH60_57 PF01695 IstB-like ATP binding protein CH60_570 PF12706 Beta-lactamase superfamily domain CH60_572 PF07969 Amidohydrolase family CH60_573 PF00005 ABC transporter CH60_574 PF00005 ABC transporter CH60_575 PF06007 Phosphonate metabolism protein PhnJ CH60_576 PF05861 Bacterial phosphonate metabolism protein (PhnI) CH60_577 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH60_578 PF06754 Phosphonate metabolism protein PhnG CH60_579 PF07702 UTRA domain CH60_579 PF00392 Bacterial regulatory proteins, gntR family CH60_58 PF02796 Helix-turn-helix domain of resolvase CH60_58 PF00665 Integrase core domain CH60_582 PF03477 ATP cone domain CH60_582 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH60_583 PF00005 ABC transporter CH60_583 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH60_584 PF00005 ABC transporter CH60_584 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH60_585 PF00528 Binding-protein-dependent transport system inner membrane component CH60_585 PF12911 N-terminal TM domain of oligopeptide transport permease C CH60_586 PF00528 Binding-protein-dependent transport system inner membrane component CH60_589 PF04074 YhcH/YjgK/YiaL CH60_590 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH60_590 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH60_591 PF06877 Regulator of ribonuclease activity B CH60_592 PF00583 Acetyltransferase (GNAT) family CH60_593 PF08264 Anticodon-binding domain of tRNA CH60_593 PF00133 tRNA synthetases class I (I, L, M and V) CH60_593 PF10458 Valyl tRNA synthetase tRNA binding arm CH60_594 PF04364 DNA polymerase III chi subunit, HolC CH60_595 PF00883 Cytosol aminopeptidase family, catalytic domain CH60_595 PF02789 Cytosol aminopeptidase family, N-terminal domain CH60_596 PF03739 Lipopolysaccharide export system permease LptF/LptG CH60_597 PF03739 Lipopolysaccharide export system permease LptF/LptG CH60_599 PF13356 Arm DNA-binding domain CH60_599 PF00589 Phage integrase family CH60_6 PF13407 Periplasmic binding protein domain CH60_60 PF08220 DeoR-like helix-turn-helix domain CH60_60 PF00455 DeoR C terminal sensor domain CH60_601 PF01119 DNA mismatch repair protein, C-terminal domain CH60_601 PF08676 MutL C terminal dimerisation domain CH60_602 PF01695 IstB-like ATP binding protein CH60_603 PF00665 Integrase core domain CH60_603 PF02796 Helix-turn-helix domain of resolvase CH60_604 PF01797 Transposase IS200 like CH60_605 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH60_606 PF13525 Outer membrane lipoprotein CH60_607 PF00849 RNA pseudouridylate synthase CH60_607 PF01479 S4 domain CH60_609 PF17871 AAA lid domain CH60_609 PF02861 Clp amino terminal domain, pathogenicity island component CH60_609 PF10431 C-terminal, D2-small domain, of ClpB protein CH60_609 PF00004 ATPase family associated with various cellular activities (AAA) CH60_609 PF07724 AAA domain (Cdc48 subfamily) CH60_61 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH60_61 PF01694 Rhomboid family CH60_616 PF10043 Predicted periplasmic lipoprotein (DUF2279) CH60_617 PF13091 PLD-like domain CH60_618 PF00583 Acetyltransferase (GNAT) family CH60_618 PF13607 Succinyl-CoA ligase like flavodoxin domain CH60_618 PF13380 CoA binding domain CH60_62 PF00581 Rhodanese-like domain CH60_620 PF00085 Thioredoxin CH60_621 PF00588 SpoU rRNA Methylase family CH60_621 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH60_622 PF07690 Major Facilitator Superfamily CH60_623 PF00529 HlyD membrane-fusion protein of T1SS CH60_623 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH60_624 PF01047 MarR family CH60_625 PF05437 Branched-chain amino acid transport protein (AzlD) CH60_626 PF03591 AzlC protein CH60_627 PF07690 Major Facilitator Superfamily CH60_629 PF01425 Amidase CH60_63 PF17874 MalT-like TPR region CH60_63 PF00196 Bacterial regulatory proteins, luxR family CH60_632 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH60_633 PF00528 Binding-protein-dependent transport system inner membrane component CH60_635 PF00005 ABC transporter CH60_636 PF00266 Aminotransferase class-V CH60_637 PF01695 IstB-like ATP binding protein CH60_64 PF00343 Carbohydrate phosphorylase CH60_640 PF00665 Integrase core domain CH60_640 PF02796 Helix-turn-helix domain of resolvase CH60_643 PF08402 TOBE domain CH60_643 PF00005 ABC transporter CH60_644 PF00528 Binding-protein-dependent transport system inner membrane component CH60_645 PF00528 Binding-protein-dependent transport system inner membrane component CH60_647 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH60_647 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH60_654 PF00872 Transposase, Mutator family CH60_655 PF00872 Transposase, Mutator family CH60_667 PF05638 Type VI secretion system effector, Hcp CH60_67 PF02446 4-alpha-glucanotransferase CH60_677 PF01066 CDP-alcohol phosphatidyltransferase CH60_678 PF01541 GIY-YIG catalytic domain CH60_678 PF08459 UvrC Helix-hairpin-helix N-terminal CH60_678 PF02151 UvrB/uvrC motif CH60_679 PF00196 Bacterial regulatory proteins, luxR family CH60_679 PF00072 Response regulator receiver domain CH60_68 PF01106 NifU-like domain CH60_68 PF01521 Iron-sulphur cluster biosynthesis CH60_680 PF10769 Protein of unknown function (DUF2594) CH60_681 PF06942 GlpM protein CH60_683 PF13505 Outer membrane protein beta-barrel domain CH60_685 PF00324 Amino acid permease CH60_686 PF01344 Kelch motif CH60_687 PF03358 NADPH-dependent FMN reductase CH60_688 PF04261 Dyp-type peroxidase family CH60_689 PF09375 Imelysin CH60_689 PF13473 Cupredoxin-like domain CH60_69 PF00156 Phosphoribosyl transferase domain CH60_690 PF03239 Iron permease FTR1 family CH60_691 PF00474 Sodium:solute symporter family CH60_693 PF01619 Proline dehydrogenase CH60_693 PF00171 Aldehyde dehydrogenase family CH60_693 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH60_693 PF14850 DNA-binding domain of Proline dehydrogenase CH60_699 PF00291 Pyridoxal-phosphate dependent enzyme CH60_7 PF02653 Branched-chain amino acid transport system / permease component CH60_70 PF00561 alpha/beta hydrolase fold CH60_700 PF02899 Phage integrase, N-terminal SAM-like domain CH60_701 PF04539 Sigma-70 region 3 CH60_701 PF04542 Sigma-70 region 2 CH60_701 PF04545 Sigma-70, region 4 CH60_702 PF08884 Flagellin D3 domain CH60_702 PF00700 Bacterial flagellin C-terminal helical region CH60_702 PF00669 Bacterial flagellin N-terminal helical region CH60_703 PF02465 Flagellar hook-associated protein 2 N-terminus CH60_703 PF07195 Flagellar hook-associated protein 2 C-terminus CH60_703 PF07196 Flagellin hook IN motif CH60_704 PF02561 Flagellar protein FliS CH60_705 PF05400 Flagellar protein FliT CH60_706 PF12833 Helix-turn-helix domain CH60_707 PF00211 Adenylate and Guanylate cyclase catalytic domain CH60_707 PF02743 Cache domain CH60_707 PF00672 HAMP domain CH60_708 PF01966 HD domain CH60_709 PF00730 HhH-GPD superfamily base excision DNA repair protein CH60_71 PF07338 Protein of unknown function (DUF1471) CH60_712 PF02049 Flagellar hook-basal body complex protein FliE CH60_713 PF01514 Secretory protein of YscJ/FliF family CH60_713 PF08345 Flagellar M-ring protein C-terminal CH60_714 PF14842 FliG N-terminal domain CH60_714 PF14841 FliG middle domain CH60_714 PF01706 FliG C-terminal domain CH60_715 PF02108 Flagellar assembly protein FliH CH60_716 PF18269 T3SS EscN ATPase C-terminal domain CH60_716 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH60_717 PF02050 Flagellar FliJ protein CH60_718 PF02120 Flagellar hook-length control protein FliK CH60_719 PF03748 Flagellar basal body-associated protein FliL CH60_72 PF09012 FeoC like transcriptional regulator CH60_720 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH60_720 PF02154 Flagellar motor switch protein FliM CH60_721 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH60_721 PF16973 Flagellar motor switch protein FliN N-terminal CH60_722 PF04347 Flagellar biosynthesis protein, FliO CH60_723 PF00813 FliP family CH60_724 PF01313 Bacterial export proteins, family 3 CH60_725 PF01311 Bacterial export proteins, family 1 CH60_728 PF00294 pfkB family carbohydrate kinase CH60_729 PF02653 Branched-chain amino acid transport system / permease component CH60_73 PF17910 FeoB cytosolic helical domain CH60_73 PF07664 Ferrous iron transport protein B C terminus CH60_73 PF07670 Nucleoside recognition CH60_73 PF02421 Ferrous iron transport protein B CH60_730 PF00005 ABC transporter CH60_731 PF13407 Periplasmic binding protein domain CH60_732 PF02653 Branched-chain amino acid transport system / permease component CH60_733 PF00596 Class II Aldolase and Adducin N-terminal domain CH60_734 PF04198 Putative sugar-binding domain CH60_735 PF00669 Bacterial flagellin N-terminal helical region CH60_736 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH60_736 PF00460 Flagella basal body rod protein CH60_737 PF10135 Rod binding protein CH60_737 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH60_738 PF02119 Flagellar P-ring protein CH60_739 PF02107 Flagellar L-ring protein CH60_74 PF04023 FeoA domain CH60_740 PF00460 Flagella basal body rod protein CH60_740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH60_741 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH60_741 PF00460 Flagella basal body rod protein CH60_742 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH60_742 PF00460 Flagella basal body rod protein CH60_742 PF07559 Flagellar basal body protein FlaE CH60_743 PF03963 Flagellar hook capping protein - N-terminal region CH60_743 PF13861 FlgD Tudor-like domain CH60_743 PF13860 FlgD Ig-like domain CH60_744 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH60_744 PF00460 Flagella basal body rod protein CH60_745 PF00460 Flagella basal body rod protein CH60_746 PF17656 FlgA N-terminal domain CH60_746 PF13144 Chaperone for flagella basal body P-ring formation CH60_747 PF04316 Anti-sigma-28 factor, FlgM CH60_748 PF05130 FlgN protein CH60_749 PF07979 Intimin C-type lectin domain CH60_749 PF09134 Invasin, domain 3 CH60_749 PF02369 Bacterial Ig-like domain (group 1) CH60_749 PF11924 Inverse autotransporter, beta-domain CH60_75 PF09371 Tex-like protein N-terminal domain CH60_75 PF00575 S1 RNA binding domain CH60_75 PF16921 Tex protein YqgF-like domain CH60_75 PF17674 HHH domain CH60_750 PF01797 Transposase IS200 like CH60_751 PF02369 Bacterial Ig-like domain (group 1) CH60_751 PF07979 Intimin C-type lectin domain CH60_751 PF11924 Inverse autotransporter, beta-domain CH60_751 PF09134 Invasin, domain 3 CH60_752 PF06366 Flagellar protein FlhE CH60_753 PF00771 FHIPEP family CH60_754 PF01312 FlhB HrpN YscU SpaS Family CH60_757 PF10709 Protein of unknown function (DUF2511) CH60_759 PF04234 CopC domain CH60_76 PF01272 Transcription elongation factor, GreA/GreB, C-term CH60_76 PF03449 Transcription elongation factor, N-terminal CH60_760 PF00210 Ferritin-like domain CH60_761 PF06440 DNA polymerase III, theta subunit CH60_762 PF00561 alpha/beta hydrolase fold CH60_763 PF00326 Prolyl oligopeptidase family CH60_763 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH60_764 PF13995 YebF-like protein CH60_766 PF07130 YebG protein CH60_767 PF03880 DbpA RNA binding domain CH60_767 PF00270 DEAD/DEAH box helicase CH60_767 PF00271 Helicase conserved C-terminal domain CH60_768 PF02222 ATP-grasp domain CH60_769 PF03701 Uncharacterised protein family (UPF0181) CH60_77 PF00072 Response regulator receiver domain CH60_77 PF00486 Transcriptional regulatory protein, C terminal CH60_770 PF04715 Anthranilate synthase component I, N terminal region CH60_770 PF00425 chorismate binding enzyme CH60_771 PF00293 NUDIX domain CH60_772 PF03313 Serine dehydratase alpha chain CH60_772 PF03315 Serine dehydratase beta chain CH60_773 PF01613 Flavin reductase like domain CH60_774 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CH60_774 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CH60_777 PF03328 HpcH/HpaI aldolase/citrate lyase family CH60_778 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH60_779 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CH60_78 PF00672 HAMP domain CH60_78 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_78 PF00512 His Kinase A (phospho-acceptor) domain CH60_780 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH60_781 PF00171 Aldehyde dehydrogenase family CH60_782 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH60_783 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH60_784 PF01047 MarR family CH60_785 PF03741 Integral membrane protein TerC family CH60_785 PF03471 Transporter associated domain CH60_786 PF03610 PTS system fructose IIA component CH60_786 PF03830 PTS system sorbose subfamily IIB component CH60_787 PF03609 PTS system sorbose-specific iic component CH60_788 PF03613 PTS system mannose/fructose/sorbose family IID component CH60_789 PF06173 Protein of unknown function (DUF986) CH60_79 PF01293 Phosphoenolpyruvate carboxykinase CH60_790 PF02659 Putative manganese efflux pump CH60_791 PF00593 TonB dependent receptor CH60_791 PF07715 TonB-dependent Receptor Plug Domain CH60_792 PF02796 Helix-turn-helix domain of resolvase CH60_792 PF00665 Integrase core domain CH60_793 PF01695 IstB-like ATP binding protein CH60_796 PF00782 Dual specificity phosphatase, catalytic domain CH60_797 PF12146 Serine aminopeptidase, S33 CH60_797 PF12147 Putative methyltransferase CH60_798 PF01553 Acyltransferase CH60_8 PF00005 ABC transporter CH60_80 PF01430 Hsp33 protein CH60_800 PF01066 CDP-alcohol phosphatidyltransferase CH60_806 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH60_806 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH60_808 PF01797 Transposase IS200 like CH60_81 PF01479 S4 domain CH60_810 PF01406 tRNA synthetases class I (C) catalytic domain CH60_810 PF09190 DALR domain CH60_811 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH60_812 PF00149 Calcineurin-like phosphoesterase CH60_813 PF00731 AIR carboxylase CH60_814 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH60_814 PF02222 ATP-grasp domain CH60_816 PF00005 ABC transporter CH60_817 PF13472 GDSL-like Lipase/Acylhydrolase family CH60_818 PF00106 short chain dehydrogenase CH60_819 PF00085 Thioredoxin CH60_82 PF13419 Haloacid dehalogenase-like hydrolase CH60_820 PF01145 SPFH domain / Band 7 family CH60_820 PF16200 C-terminal region of band_7 CH60_821 PF01957 NfeD-like C-terminal, partner-binding CH60_822 PF13411 MerR HTH family regulatory protein CH60_823 PF00403 Heavy-metal-associated domain CH60_824 PF01963 TraB family CH60_825 PF04073 Aminoacyl-tRNA editing domain CH60_828 PF00149 Calcineurin-like phosphoesterase CH60_828 PF02872 5'-nucleotidase, C-terminal domain CH60_829 PF00149 Calcineurin-like phosphoesterase CH60_829 PF02872 5'-nucleotidase, C-terminal domain CH60_83 PF07095 Intracellular growth attenuator protein IgaA CH60_830 PF00149 Calcineurin-like phosphoesterase CH60_830 PF02872 5'-nucleotidase, C-terminal domain CH60_831 PF07690 Major Facilitator Superfamily CH60_832 PF02254 TrkA-N domain CH60_832 PF00999 Sodium/hydrogen exchanger family CH60_833 PF00294 pfkB family carbohydrate kinase CH60_834 PF02706 Chain length determinant protein CH60_835 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH60_835 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH60_835 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH60_835 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH60_836 PF00535 Glycosyl transferase family 2 CH60_837 PF01050 Mannose-6-phosphate isomerase CH60_837 PF00483 Nucleotidyl transferase CH60_838 PF01370 NAD dependent epimerase/dehydratase family CH60_839 PF16363 GDP-mannose 4,6 dehydratase CH60_840 PF16363 GDP-mannose 4,6 dehydratase CH60_841 PF00534 Glycosyl transferases group 1 CH60_841 PF13439 Glycosyltransferase Family 4 CH60_85 PF00293 NUDIX domain CH60_850 PF01370 NAD dependent epimerase/dehydratase family CH60_851 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH60_852 PF16363 GDP-mannose 4,6 dehydratase CH60_853 PF00483 Nucleotidyl transferase CH60_854 PF00970 Oxidoreductase FAD-binding domain CH60_854 PF00175 Oxidoreductase NAD-binding domain CH60_854 PF00111 2Fe-2S iron-sulfur cluster binding domain CH60_855 PF00762 Ferrochelatase CH60_856 PF05191 Adenylate kinase, active site lid CH60_857 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_857 PF00183 Hsp90 protein CH60_858 PF13662 Toprim domain CH60_858 PF02132 RecR protein CH60_859 PF02575 YbaB/EbfC DNA-binding family CH60_86 PF00912 Transglycosylase CH60_86 PF00905 Penicillin binding protein transpeptidase domain CH60_86 PF17092 Penicillin-binding protein OB-like domain CH60_860 PF12169 DNA polymerase III subunits gamma and tau domain III CH60_860 PF12170 DNA polymerase III tau subunit V interacting with alpha CH60_860 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH60_861 PF00156 Phosphoribosyl transferase domain CH60_862 PF04304 Protein of unknown function (DUF454) CH60_864 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH60_864 PF12795 Mechanosensitive ion channel porin domain CH60_864 PF00924 Mechanosensitive ion channel CH60_865 PF02635 DsrE/DsrF-like family CH60_866 PF08361 MAATS-type transcriptional repressor, C-terminal region CH60_866 PF00440 Bacterial regulatory proteins, tetR family CH60_867 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH60_867 PF00529 HlyD membrane-fusion protein of T1SS CH60_868 PF00873 AcrB/AcrD/AcrF family CH60_869 PF01197 Ribosomal protein L31 CH60_870 PF00444 Ribosomal protein L36 CH60_872 PF10757 Biofilm formation regulator YbaJ CH60_873 PF05321 Haemolysin expression modulating protein CH60_874 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH60_875 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH60_877 PF00909 Ammonium Transporter Family CH60_878 PF00543 Nitrogen regulatory protein P-II CH60_879 PF00005 ABC transporter CH60_879 PF00664 ABC transporter transmembrane region CH60_880 PF00664 ABC transporter transmembrane region CH60_880 PF00005 ABC transporter CH60_881 PF01037 Lrp/AsnC ligand binding domain CH60_881 PF13404 AsnC-type helix-turn-helix domain CH60_882 PF00291 Pyridoxal-phosphate dependent enzyme CH60_884 PF12793 Sugar transport-related sRNA regulator N-term CH60_884 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH60_885 PF06508 Queuosine biosynthesis protein QueC CH60_888 PF13145 PPIC-type PPIASE domain CH60_889 PF00216 Bacterial DNA-binding protein CH60_890 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH60_890 PF05362 Lon protease (S16) C-terminal proteolytic domain CH60_890 PF00004 ATPase family associated with various cellular activities (AAA) CH60_891 PF06689 ClpX C4-type zinc finger CH60_891 PF10431 C-terminal, D2-small domain, of ClpB protein CH60_891 PF07724 AAA domain (Cdc48 subfamily) CH60_892 PF00574 Clp protease CH60_893 PF05698 Bacterial trigger factor protein (TF) C-terminus CH60_893 PF05697 Bacterial trigger factor protein (TF) CH60_893 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH60_895 PF01722 BolA-like protein CH60_896 PF03923 Uncharacterized lipoprotein CH60_896 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH60_897 PF07690 Major Facilitator Superfamily CH60_898 PF03502 Nucleoside-specific channel-forming protein, Tsx CH60_899 PF06481 COX Aromatic Rich Motif CH60_899 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH60_9 PF00072 Response regulator receiver domain CH60_9 PF00512 His Kinase A (phospho-acceptor) domain CH60_9 PF08448 PAS fold CH60_9 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_9 PF13188 PAS domain CH60_900 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH60_901 PF00510 Cytochrome c oxidase subunit III CH60_902 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CH60_903 PF01040 UbiA prenyltransferase family CH60_904 PF07690 Major Facilitator Superfamily CH60_905 PF04461 Protein of unknown function (DUF520) CH60_906 PF02558 Ketopantoate reductase PanE/ApbA CH60_906 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH60_907 PF01965 DJ-1/PfpI family CH60_908 PF02568 Thiamine biosynthesis protein (ThiI) CH60_908 PF02926 THUMP domain CH60_909 PF02609 Exonuclease VII small subunit CH60_91 PF00263 Bacterial type II and III secretion system protein CH60_91 PF03958 Bacterial type II/III secretion system short domain CH60_910 PF00348 Polyprenyl synthetase CH60_911 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH60_911 PF02780 Transketolase, C-terminal domain CH60_911 PF02779 Transketolase, pyrimidine binding domain CH60_912 PF01797 Transposase IS200 like CH60_913 PF04608 Phosphatidylglycerophosphatase A CH60_914 PF02769 AIR synthase related protein, C-terminal domain CH60_914 PF00586 AIR synthase related protein, N-terminal domain CH60_915 PF01029 NusB family CH60_916 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH60_917 PF01872 RibD C-terminal domain CH60_917 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH60_918 PF03477 ATP cone domain CH60_92 PF01202 Shikimate kinase CH60_921 PF01797 Transposase IS200 like CH60_922 PF02355 Protein export membrane protein CH60_922 PF07549 SecD/SecF GG Motif CH60_923 PF02355 Protein export membrane protein CH60_923 PF07549 SecD/SecF GG Motif CH60_923 PF13721 SecD export protein N-terminal TM region CH60_924 PF02699 Preprotein translocase subunit CH60_925 PF01702 Queuine tRNA-ribosyltransferase CH60_926 PF02547 Queuosine biosynthesis protein CH60_927 PF04336 Acyl carrier protein phosphodiesterase CH60_928 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH60_928 PF00578 AhpC/TSA family CH60_93 PF01761 3-dehydroquinate synthase CH60_932 PF00128 Alpha amylase, catalytic domain CH60_932 PF02903 Alpha amylase, N-terminal ig-like domain CH60_933 PF00324 Amino acid permease CH60_934 PF05525 Branched-chain amino acid transport protein CH60_935 PF12849 PBP superfamily domain CH60_936 PF00989 PAS fold CH60_936 PF00512 His Kinase A (phospho-acceptor) domain CH60_936 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH60_936 PF11808 Phosphate regulon sensor protein PhoR CH60_937 PF00486 Transcriptional regulatory protein, C terminal CH60_937 PF00072 Response regulator receiver domain CH60_938 PF00149 Calcineurin-like phosphoesterase CH60_938 PF12320 Type 5 capsule protein repressor C-terminal domain CH60_939 PF13476 AAA domain CH60_94 PF05036 Sporulation related domain CH60_940 PF00480 ROK family CH60_941 PF04381 Putative exonuclease, RdgC CH60_942 PF06865 Pyrimidine/purine nucleoside phosphorylase CH60_943 PF01202 Shikimate kinase CH60_945 PF08241 Methyltransferase domain CH60_947 PF07317 Flagellar regulator YcgR CH60_947 PF07238 PilZ domain CH60_948 PF00171 Aldehyde dehydrogenase family CH60_949 PF01472 PUA domain CH60_949 PF00696 Amino acid kinase family CH60_95 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH60_950 PF07417 Sigma factor-binding transcriptional regulator Crl CH60_952 PF00156 Phosphoribosyl transferase domain CH60_956 PF07687 Peptidase dimerisation domain CH60_956 PF01546 Peptidase family M20/M25/M40 CH60_957 PF11798 IMS family HHH motif CH60_957 PF11799 impB/mucB/samB family C-terminal domain CH60_957 PF00817 impB/mucB/samB family CH60_958 PF03009 Glycerophosphoryl diester phosphodiesterase family CH60_96 PF00834 Ribulose-phosphate 3 epimerase family CH60_960 PF02424 ApbE family CH60_961 PF00175 Oxidoreductase NAD-binding domain CH60_961 PF00970 Oxidoreductase FAD-binding domain CH60_961 PF00111 2Fe-2S iron-sulfur cluster binding domain CH60_962 PF02508 Rnf-Nqr subunit, membrane protein CH60_963 PF02508 Rnf-Nqr subunit, membrane protein CH60_964 PF04205 FMN-binding domain CH60_965 PF03116 NQR2, RnfD, RnfE family CH60_966 PF11973 NQRA C-terminal domain CH60_966 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH60_967 PF13230 Glutamine amidotransferases class-II CH60_968 PF03734 L,D-transpeptidase catalytic domain CH60_969 PF13580 SIS domain CH60_97 PF13419 Haloacid dehalogenase-like hydrolase CH60_970 PF09317 Domain of unknown function (DUF1974) CH60_970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH60_970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH60_972 PF18254 HMW1 domain 2 CH60_972 PF18071 HMW1C N-terminal CH60_973 PF05860 haemagglutination activity domain CH60_974 PF08479 POTRA domain, ShlB-type CH60_974 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH60_975 PF01546 Peptidase family M20/M25/M40 CH60_975 PF07687 Peptidase dimerisation domain CH60_976 PF00266 Aminotransferase class-V CH60_977 PF00665 Integrase core domain CH60_977 PF02796 Helix-turn-helix domain of resolvase CH60_978 PF01695 IstB-like ATP binding protein CH60_979 PF00589 Phage integrase family CH60_979 PF13356 Arm DNA-binding domain CH60_98 PF00579 tRNA synthetases class I (W and Y) CH60_980 PF01527 Transposase CH60_982 PF12697 Alpha/beta hydrolase family CH60_984 PF01402 Ribbon-helix-helix protein, copG family CH60_985 PF00258 Flavodoxin CH60_986 PF01475 Ferric uptake regulator family CH60_987 PF02838 Glycosyl hydrolase family 20, domain 2 CH60_987 PF00728 Glycosyl hydrolase family 20, catalytic domain CH60_987 PF03173 Putative carbohydrate binding domain CH60_987 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH60_988 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH60_988 PF02838 Glycosyl hydrolase family 20, domain 2 CH60_988 PF00728 Glycosyl hydrolase family 20, catalytic domain CH60_988 PF03173 Putative carbohydrate binding domain CH60_989 PF03573 outer membrane porin, OprD family CH60_99 PF10414 Sirohaem synthase dimerisation region CH60_99 PF14824 Sirohaem biosynthesis protein central CH60_99 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH60_990 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH60_990 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH60_991 PF00367 phosphotransferase system, EIIB CH60_991 PF02378 Phosphotransferase system, EIIC CH60_991 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH60_992 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH60_993 PF01979 Amidohydrolase family CH60_994 PF00480 ROK family CH60_994 PF01047 MarR family CH60_995 PF13344 Haloacid dehalogenase-like hydrolase CH60_996 PF13537 Glutamine amidotransferase domain CH60_996 PF00733 Asparagine synthase