CH60_1004 SM00729 Elongator protein 3, MiaB family, Radical SAM CH60_1007 SM00116 Domain in cystathionine beta-synthase and other proteins. CH60_1007 SM01091 Transporter associated domain CH60_1009 SM00062 Bacterial periplasmic substrate-binding proteins CH60_1012 SM00382 ATPases associated with a variety of cellular activities CH60_1023 SM00936 Penicillin-binding protein 5, C-terminal domain CH60_1026 SM00729 Elongator protein 3, MiaB family, Radical SAM CH60_1029 SM00357 Cold shock protein domain CH60_1031 SM00421 helix_turn_helix, Lux Regulon CH60_1036 SM00382 ATPases associated with a variety of cellular activities CH60_1043 SM00382 ATPases associated with a variety of cellular activities CH60_1053 SM01359 CH60_1053 CH60_1053 SM01360 CH60_1053 CH60_106 SM00354 helix_turn _helix lactose operon repressor CH60_1063 SM00869 Autotransporter beta-domain CH60_1070 SM01217 CH60_1070 CH60_1076 SM00382 ATPases associated with a variety of cellular activities CH60_1077 SM00825 Beta-ketoacyl synthase CH60_1078 SM01321 CH60_1078 CH60_1082 SM00382 ATPases associated with a variety of cellular activities CH60_1083 SM00981 CH60_1083 CH60_1092 SM00849 Metallo-beta-lactamase superfamily CH60_1095 SM01321 CH60_1095 CH60_1103 SM00357 Cold shock protein domain CH60_1104 SM01150 CH60_1104 CH60_1106 SM00382 ATPases associated with a variety of cellular activities CH60_1107 SM00849 Metallo-beta-lactamase superfamily CH60_1108 SM00411 bacterial (prokaryotic) histone like domain CH60_1110 SM00316 Ribosomal protein S1-like RNA-binding domain CH60_1116 SM00870 CH60_1116 CH60_1124 SM00382 ATPases associated with a variety of cellular activities CH60_1127 SM00843 CH60_1127 CH60_1128 SM00344 helix_turn_helix ASNC type CH60_113 SM00100 Cyclic nucleotide-monophosphate binding domain CH60_113 SM00419 helix_turn_helix, cAMP Regulatory protein CH60_1130 SM00382 ATPases associated with a variety of cellular activities CH60_1131 SM00382 ATPases associated with a variety of cellular activities CH60_1133 SM00316 Ribosomal protein S1-like RNA-binding domain CH60_1134 SM01321 CH60_1134 CH60_1135 SM00382 ATPases associated with a variety of cellular activities CH60_1135 SM01086 C-terminal, D2-small domain, of ClpB protein CH60_1137 SM00357 Cold shock protein domain CH60_1138 SM00382 ATPases associated with a variety of cellular activities CH60_1150 SM00830 Chorismate mutase type II CH60_1151 SM00382 ATPases associated with a variety of cellular activities CH60_1152 SM00062 Bacterial periplasmic substrate-binding proteins CH60_1152 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH60_1158 SM00382 ATPases associated with a variety of cellular activities CH60_1162 SM00244 prohibitin homologues CH60_1164 SM00062 Bacterial periplasmic substrate-binding proteins CH60_1164 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH60_1169 SM00382 ATPases associated with a variety of cellular activities CH60_1176 SM00014 Acid phosphatase homologues CH60_1177 SM01133 CH60_1177 CH60_1178 SM00420 helix_turn_helix, Deoxyribose operon repressor CH60_1178 SM01134 CH60_1178 CH60_1180 SM00936 Penicillin-binding protein 5, C-terminal domain CH60_1182 SM00382 ATPases associated with a variety of cellular activities CH60_1182 SM00930 CH60_1182 CH60_1188 SM00382 ATPases associated with a variety of cellular activities CH60_1198 SM00382 ATPases associated with a variety of cellular activities CH60_12 SM01321 CH60_12 CH60_120 SM00062 Bacterial periplasmic substrate-binding proteins CH60_1200 SM00869 Autotransporter beta-domain CH60_1203 SM00947 Carbonic anhydrase CH60_1207 SM00382 ATPases associated with a variety of cellular activities CH60_121 SM00382 ATPases associated with a variety of cellular activities CH60_1218 SM00862 Transcriptional regulatory protein, C terminal CH60_1221 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH60_1221 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH60_1221 SM00319 Homologues of the ligand binding domain of Tar CH60_1222 SM00849 Metallo-beta-lactamase superfamily CH60_1226 SM00354 helix_turn _helix lactose operon repressor CH60_1229 SM00563 Phosphate acyltransferases CH60_1234 SM00927 DNA mismatch repair enzyme MutH CH60_1236 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH60_1249 SM00646 CH60_1249 CH60_1252 SM00925 MltA specific insert domain CH60_1260 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH60_1260 SM00475 5'-3' exonuclease CH60_1264 SM01321 CH60_1264 CH60_127 SM00382 ATPases associated with a variety of cellular activities CH60_1270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH60_1279 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH60_1281 SM00935 Outer membrane protein (OmpH-like) CH60_1287 SM00481 DNA polymerase alpha chain like domain CH60_1290 SM00977 TilS substrate C-terminal domain CH60_1294 SM01322 CH60_1294 CH60_1302 SM00382 ATPases associated with a variety of cellular activities CH60_1302 SM00930 CH60_1302 CH60_1313 SM00257 Lysin motif CH60_1314 SM00849 Metallo-beta-lactamase superfamily CH60_1317 SM00479 CH60_1317 CH60_1328 SM00382 ATPases associated with a variety of cellular activities CH60_1345 SM00382 ATPases associated with a variety of cellular activities CH60_1361 SM00046 Diacylglycerol kinase catalytic domain (presumed) CH60_1364 SM00448 cheY-homologous receiver domain CH60_1364 SM00862 Transcriptional regulatory protein, C terminal CH60_1365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH60_1365 SM00387 Histidine kinase-like ATPases CH60_1365 SM00388 His Kinase A (phosphoacceptor) domain CH60_1370 SM00382 ATPases associated with a variety of cellular activities CH60_1371 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH60_1377 SM00924 MgtE intracellular N domain CH60_1382 SM00382 ATPases associated with a variety of cellular activities CH60_1389 SM01321 CH60_1389 CH60_1398 SM01130 CH60_1398 CH60_140 SM00838 Elongation factor G C-terminus CH60_140 SM00889 Elongation factor G, domain IV CH60_1400 SM01321 CH60_1400 CH60_1412 SM00382 ATPases associated with a variety of cellular activities CH60_1419 SM00421 helix_turn_helix, Lux Regulon CH60_1419 SM00448 cheY-homologous receiver domain CH60_142 SM01321 CH60_142 CH60_1422 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH60_1426 SM00919 Malic enzyme, NAD binding domain CH60_1426 SM01274 CH60_1426 CH60_1432 SM00869 Autotransporter beta-domain CH60_1436 SM01130 CH60_1436 CH60_1438 SM00364 Leucine-rich repeats, bacterial type CH60_1438 SM00369 Leucine-rich repeats, typical (most populated) subfamily CH60_1446 SM00382 ATPases associated with a variety of cellular activities CH60_1449 SM00448 cheY-homologous receiver domain CH60_1449 SM00862 Transcriptional regulatory protein, C terminal CH60_1450 SM00387 Histidine kinase-like ATPases CH60_1450 SM00388 His Kinase A (phosphoacceptor) domain CH60_1451 SM00327 von Willebrand factor (vWF) type A domain CH60_1457 SM00450 Rhodanese Homology Domain CH60_1458 SM00382 ATPases associated with a variety of cellular activities CH60_146 SM01403 CH60_146 CH60_1460 SM00448 cheY-homologous receiver domain CH60_1460 SM00862 Transcriptional regulatory protein, C terminal CH60_1461 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH60_1461 SM00387 Histidine kinase-like ATPases CH60_1461 SM00388 His Kinase A (phosphoacceptor) domain CH60_1463 SM01321 CH60_1463 CH60_1469 SM00771 ZipA, C-terminal domain (FtsZ-binding) CH60_1470 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH60_1470 SM00292 breast cancer carboxy-terminal domain CH60_1470 SM00532 Ligase N family CH60_1498 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH60_15 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH60_150 SM01382 CH60_150 CH60_150 SM01383 CH60_150 CH60_1502 SM00382 ATPases associated with a variety of cellular activities CH60_1506 SM00421 helix_turn_helix, Lux Regulon CH60_1515 SM00382 ATPases associated with a variety of cellular activities CH60_1515 SM01086 C-terminal, D2-small domain, of ClpB protein CH60_1522 SM00357 Cold shock protein domain CH60_1526 SM00382 ATPases associated with a variety of cellular activities CH60_1527 SM00382 ATPases associated with a variety of cellular activities CH60_153 SM00322 K homology RNA-binding domain CH60_1532 SM00988 UreE urease accessory protein, N-terminal domain CH60_1545 SM00342 helix_turn_helix, arabinose operon control protein CH60_1554 SM00448 cheY-homologous receiver domain CH60_1554 SM00862 Transcriptional regulatory protein, C terminal CH60_1555 SM00387 Histidine kinase-like ATPases CH60_1555 SM00388 His Kinase A (phosphoacceptor) domain CH60_1565 SM00796 Allophanate hydrolase subunit 1 CH60_1566 SM00797 Allophanate hydrolase subunit 2 CH60_157 SM01374 CH60_157 CH60_1571 SM00986 Uracil DNA glycosylase superfamily CH60_1571 SM00987 UreE urease accessory protein, C-terminal domain CH60_1575 SM00248 ankyrin repeats CH60_158 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH60_1588 SM00358 Double-stranded RNA binding motif CH60_1588 SM00535 Ribonuclease III family CH60_1593 SM01321 CH60_1593 CH60_16 SM00235 Zinc-dependent metalloprotease CH60_1604 SM00062 Bacterial periplasmic substrate-binding proteins CH60_1605 SM01211 CH60_1605 CH60_1609 SM01321 CH60_1609 CH60_1610 SM00387 Histidine kinase-like ATPases CH60_1610 SM00388 His Kinase A (phosphoacceptor) domain CH60_1612 SM00382 ATPases associated with a variety of cellular activities CH60_1612 SM00448 cheY-homologous receiver domain CH60_1614 SM00938 Nitrogen regulatory protein P-II CH60_1630 SM00271 DnaJ molecular chaperone homology domain CH60_1638 SM00869 Autotransporter beta-domain CH60_1641 SM00562 CH60_1641 CH60_1643 SM00028 Tetratricopeptide repeats CH60_1644 SM00530 Helix-turn-helix XRE-family like proteins CH60_1648 SM00564 beta-propeller repeat CH60_1653 SM00116 Domain in cystathionine beta-synthase and other proteins. CH60_1653 SM01240 CH60_1653 CH60_1655 SM01321 CH60_1655 CH60_1668 SM00382 ATPases associated with a variety of cellular activities CH60_1674 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH60_1679 SM00873 B3/4 domain CH60_1679 SM00874 tRNA synthetase B5 domain CH60_1679 SM00896 Ferredoxin-fold anticodon binding domain CH60_1680 SM00411 bacterial (prokaryotic) histone like domain CH60_1684 SM00382 ATPases associated with a variety of cellular activities CH60_1704 SM00382 ATPases associated with a variety of cellular activities CH60_1709 SM00382 ATPases associated with a variety of cellular activities CH60_171 SM00363 S4 RNA-binding domain CH60_171 SM01390 CH60_171 CH60_1712 SM01321 CH60_1712 CH60_172 SM00662 RNA polymerases D CH60_1722 SM00354 helix_turn _helix lactose operon repressor CH60_1728 SM00479 CH60_1728 CH60_1736 SM00347 helix_turn_helix multiple antibiotic resistance protein CH60_174 SM00422 helix_turn_helix, mercury resistance CH60_1741 SM00363 S4 RNA-binding domain CH60_1749 SM00382 ATPases associated with a variety of cellular activities CH60_1750 SM00382 ATPases associated with a variety of cellular activities CH60_1754 SM01321 CH60_1754 CH60_1755 SM00091 PAS domain CH60_1755 SM00382 ATPases associated with a variety of cellular activities CH60_1757 SM00953 CH60_1757 CH60_1764 SM00382 ATPases associated with a variety of cellular activities CH60_1765 SM01321 CH60_1765 CH60_1767 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH60_1771 SM00422 helix_turn_helix, mercury resistance CH60_1775 SM00890 Domain of unknown function CH60_1787 SM00382 ATPases associated with a variety of cellular activities CH60_1787 SM00487 DEAD-like helicases superfamily CH60_1787 SM00490 helicase superfamily c-terminal domain CH60_1787 SM00847 Helicase associated domain (HA2) Add an annotation CH60_1789 SM00530 Helix-turn-helix XRE-family like proteins CH60_1790 SM00020 Trypsin-like serine protease CH60_1793 SM00867 YceI-like domain CH60_1796 SM01321 CH60_1796 CH60_1798 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH60_1798 SM00387 Histidine kinase-like ATPases CH60_1798 SM00388 His Kinase A (phosphoacceptor) domain CH60_1799 SM00448 cheY-homologous receiver domain CH60_1799 SM00862 Transcriptional regulatory protein, C terminal CH60_1803 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CH60_1803 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CH60_1806 SM00100 Cyclic nucleotide-monophosphate binding domain CH60_1806 SM00419 helix_turn_helix, cAMP Regulatory protein CH60_1808 SM00098 Alkaline phosphatase homologues CH60_1819 SM00382 ATPases associated with a variety of cellular activities CH60_1824 SM00354 helix_turn _helix lactose operon repressor CH60_1838 SM00342 helix_turn_helix, arabinose operon control protein CH60_1840 SM00382 ATPases associated with a variety of cellular activities CH60_1845 SM00382 ATPases associated with a variety of cellular activities CH60_1853 SM00342 helix_turn_helix, arabinose operon control protein CH60_1855 SM00900 CH60_1855 CH60_1857 SM00478 endonuclease III CH60_1857 SM00525 CH60_1857 CH60_1860 SM00357 Cold shock protein domain CH60_1860 SM00955 CH60_1860 CH60_1865 SM01007 Class II Aldolase and Adducin N-terminal domain CH60_1868 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CH60_1870 SM00028 Tetratricopeptide repeats CH60_1872 SM00014 Acid phosphatase homologues CH60_1877 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH60_1877 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH60_1877 SM00493 CH60_1877 CH60_1881 SM00822 CH60_1881 CH60_1883 SM00363 S4 RNA-binding domain CH60_1885 SM00481 DNA polymerase alpha chain like domain CH60_1892 SM00749 bacterial OsmY and nodulation domain CH60_1907 SM00155 Phospholipase D. Active site motifs. CH60_1910 SM00382 ATPases associated with a variety of cellular activities CH60_1911 SM00382 ATPases associated with a variety of cellular activities CH60_1918 SM00528 Domain in histone-like proteins of HNS family CH60_1919 SM00984 UDP binding domain CH60_1920 SM00448 cheY-homologous receiver domain CH60_1929 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH60_1929 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH60_1929 SM00493 CH60_1929 CH60_1933 SM00870 CH60_1933 CH60_1937 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH60_1940 SM00763 PrkA AAA domain CH60_1948 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH60_1959 SM01040 BRO family, N-terminal domain CH60_1965 SM00382 ATPases associated with a variety of cellular activities CH60_1976 SM00341 Helicase and RNase D C-terminal CH60_1976 SM00474 3'-5' exonuclease CH60_1980 SM00487 DEAD-like helicases superfamily CH60_1980 SM00491 CH60_1980 CH60_1990 SM00257 Lysin motif CH60_1992 SM00382 ATPases associated with a variety of cellular activities CH60_1994 SM00382 ATPases associated with a variety of cellular activities CH60_1995 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH60_2 SM00448 cheY-homologous receiver domain CH60_2 SM00862 Transcriptional regulatory protein, C terminal CH60_2008 SM00836 DALR anticodon binding domain CH60_2008 SM01016 Arginyl tRNA synthetase N terminal dom CH60_2018 SM00481 DNA polymerase alpha chain like domain CH60_2023 SM01321 CH60_2023 CH60_2035 SM00937 CH60_2035 CH60_2039 SM01400 CH60_2039 CH60_2045 SM00450 Rhodanese Homology Domain CH60_2052 SM00448 cheY-homologous receiver domain CH60_2052 SM00862 Transcriptional regulatory protein, C terminal CH60_2053 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH60_2053 SM00387 Histidine kinase-like ATPases CH60_2053 SM00388 His Kinase A (phosphoacceptor) domain CH60_2064 SM00671 Sel1-like repeats. CH60_2066 SM00671 Sel1-like repeats. CH60_207 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH60_208 SM00316 Ribosomal protein S1-like RNA-binding domain CH60_208 SM00357 Cold shock protein domain CH60_208 SM00955 CH60_208 CH60_2081 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH60_2084 SM00382 ATPases associated with a variety of cellular activities CH60_2090 SM01005 Alanine racemase, C-terminal domain CH60_2095 SM00644 CH60_2095 CH60_2097 SM00448 cheY-homologous receiver domain CH60_2098 SM00448 cheY-homologous receiver domain CH60_2099 SM00138 Methyltransferase, chemotaxis proteins CH60_210 SM00788 Adenylosuccinate synthetase CH60_2100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH60_2100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH60_2100 SM00319 Homologues of the ligand binding domain of Tar CH60_2101 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH60_2101 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH60_2101 SM00319 Homologues of the ligand binding domain of Tar CH60_2104 SM00869 Autotransporter beta-domain CH60_2109 SM00260 Two component signalling adaptor domain CH60_2110 SM00073 Histidine Phosphotransfer domain CH60_2110 SM00260 Two component signalling adaptor domain CH60_2110 SM00387 Histidine kinase-like ATPases CH60_2110 SM01231 CH60_2110 CH60_2115 SM00831 Cation transporter/ATPase, N-terminus CH60_2117 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH60_2117 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH60_2117 SM00319 Homologues of the ligand binding domain of Tar CH60_212 SM00244 prohibitin homologues CH60_2120 SM00357 Cold shock protein domain CH60_2121 SM01038 Beta galactosidase small chain CH60_2122 SM00829 Enoylreductase CH60_2124 SM00344 helix_turn_helix ASNC type CH60_213 SM00244 prohibitin homologues CH60_2131 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH60_2131 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH60_2133 SM00354 helix_turn _helix lactose operon repressor CH60_2134 SM01329 CH60_2134 CH60_2141 SM00448 cheY-homologous receiver domain CH60_2141 SM00862 Transcriptional regulatory protein, C terminal CH60_2142 SM00387 Histidine kinase-like ATPases CH60_2142 SM00388 His Kinase A (phosphoacceptor) domain CH60_2143 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH60_2148 SM00382 ATPases associated with a variety of cellular activities CH60_2150 SM00487 DEAD-like helicases superfamily CH60_2150 SM00490 helicase superfamily c-terminal domain CH60_2150 SM00982 CH60_2150 CH60_2150 SM01058 CarD-like/TRCF domain CH60_2164 SM01321 CH60_2164 CH60_217 SM00853 MutL C terminal dimerisation domain CH60_217 SM01340 CH60_217 CH60_2171 SM01321 CH60_2171 CH60_2172 SM00825 Beta-ketoacyl synthase CH60_2174 SM00822 CH60_2174 CH60_2175 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH60_218 SM00257 Lysin motif CH60_218 SM00646 CH60_218 CH60_2181 SM00363 S4 RNA-binding domain CH60_2182 SM00316 Ribosomal protein S1-like RNA-binding domain CH60_2189 SM00421 helix_turn_helix, Lux Regulon CH60_2191 SM00450 Rhodanese Homology Domain CH60_2194 SM00421 helix_turn_helix, Lux Regulon CH60_2215 SM00354 helix_turn _helix lactose operon repressor CH60_2217 SM01321 CH60_2217 CH60_2218 SM00382 ATPases associated with a variety of cellular activities CH60_2224 SM00912 haemagglutination activity domain CH60_2229 SM01329 CH60_2229 CH60_2231 SM00354 helix_turn _helix lactose operon repressor CH60_2233 SM00382 ATPases associated with a variety of cellular activities CH60_2235 SM00829 Enoylreductase CH60_2245 SM00062 Bacterial periplasmic substrate-binding proteins CH60_2245 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH60_2247 SM00382 ATPases associated with a variety of cellular activities CH60_2248 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH60_2248 SM00091 PAS domain CH60_2248 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH60_225 SM00479 CH60_225 CH60_2253 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH60_2266 SM00354 helix_turn _helix lactose operon repressor CH60_2279 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH60_2279 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH60_2280 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH60_2287 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH60_2294 SM00354 helix_turn _helix lactose operon repressor CH60_2304 SM00052 Putative diguanylate phosphodiesterase CH60_2306 SM00382 ATPases associated with a variety of cellular activities CH60_2309 SM00062 Bacterial periplasmic substrate-binding proteins CH60_2318 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH60_2320 SM00342 helix_turn_helix, arabinose operon control protein CH60_2325 SM00825 Beta-ketoacyl synthase CH60_2333 SM00463 Small MutS-related domain CH60_2334 SM00855 Phosphoglycerate mutase family CH60_2348 SM00382 ATPases associated with a variety of cellular activities CH60_235 SM00841 Elongation factor P, C-terminal CH60_235 SM01185 CH60_235 CH60_2362 SM00382 ATPases associated with a variety of cellular activities CH60_2367 SM00644 CH60_2367 CH60_2368 SM00346 helix_turn_helix isocitrate lyase regulation CH60_2378 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH60_2378 SM00245 tail specific protease CH60_2379 SM00945 ProQ/FINO family CH60_2383 SM00972 Spore Coat Protein U domain CH60_2384 SM00972 Spore Coat Protein U domain CH60_2385 SM00972 Spore Coat Protein U domain CH60_2388 SM00972 Spore Coat Protein U domain CH60_239 SM00883 Chaperonin 10 Kd subunit CH60_2390 SM01022 CH60_2390 CH60_2394 SM00382 ATPases associated with a variety of cellular activities CH60_2395 SM00866 CH60_2395 CH60_2407 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH60_2407 SM00387 Histidine kinase-like ATPases CH60_2420 SM00382 ATPases associated with a variety of cellular activities CH60_2428 SM00420 helix_turn_helix, Deoxyribose operon repressor CH60_2428 SM01134 CH60_2428 CH60_2442 SM00421 helix_turn_helix, Lux Regulon CH60_2442 SM00448 cheY-homologous receiver domain CH60_245 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH60_2454 SM00382 ATPases associated with a variety of cellular activities CH60_2455 SM00382 ATPases associated with a variety of cellular activities CH60_2456 SM00342 helix_turn_helix, arabinose operon control protein CH60_2457 SM00823 Phosphopantetheine attachment site CH60_2458 SM00822 CH60_2458 CH60_2458 SM00823 Phosphopantetheine attachment site CH60_2458 SM00824 Thioesterase CH60_2458 SM00825 Beta-ketoacyl synthase CH60_2458 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH60_2480 SM01321 CH60_2480 CH60_2492 SM00490 helicase superfamily c-terminal domain CH60_2493 SM01321 CH60_2493 CH60_2499 SM01118 CH60_2499 CH60_2500 SM00507 HNH nucleases CH60_2503 SM00382 ATPases associated with a variety of cellular activities CH60_251 SM01276 CH60_251 CH60_2512 SM00382 ATPases associated with a variety of cellular activities CH60_2515 SM00450 Rhodanese Homology Domain CH60_2519 SM00382 ATPases associated with a variety of cellular activities CH60_2526 SM00487 DEAD-like helicases superfamily CH60_2526 SM00488 CH60_2526 CH60_2526 SM00491 CH60_2526 CH60_2527 SM01060 CH60_2527 CH60_2530 SM00852 Probable molybdopterin binding domain CH60_2536 SM00434 DNA Topoisomerase IV CH60_2537 SM00387 Histidine kinase-like ATPases CH60_2537 SM00388 His Kinase A (phosphoacceptor) domain CH60_2537 SM00448 cheY-homologous receiver domain CH60_2538 SM00421 helix_turn_helix, Lux Regulon CH60_2538 SM00448 cheY-homologous receiver domain CH60_2549 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH60_2549 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH60_2552 SM00530 Helix-turn-helix XRE-family like proteins CH60_2555 SM01007 Class II Aldolase and Adducin N-terminal domain CH60_2556 SM00420 helix_turn_helix, Deoxyribose operon repressor CH60_2556 SM01134 CH60_2556 CH60_256 SM00342 helix_turn_helix, arabinose operon control protein CH60_257 SM00342 helix_turn_helix, arabinose operon control protein CH60_2582 SM00487 DEAD-like helicases superfamily CH60_2582 SM00490 helicase superfamily c-terminal domain CH60_2585 SM00382 ATPases associated with a variety of cellular activities CH60_2591 SM00382 ATPases associated with a variety of cellular activities CH60_2591 SM00448 cheY-homologous receiver domain CH60_2592 SM00091 PAS domain CH60_2592 SM00387 Histidine kinase-like ATPases CH60_2592 SM00388 His Kinase A (phosphoacceptor) domain CH60_2595 SM01321 CH60_2595 CH60_2604 SM01321 CH60_2604 CH60_2609 SM00729 Elongator protein 3, MiaB family, Radical SAM CH60_2612 SM00382 ATPases associated with a variety of cellular activities CH60_2617 SM00487 DEAD-like helicases superfamily CH60_2617 SM00490 helicase superfamily c-terminal domain CH60_2618 SM00382 ATPases associated with a variety of cellular activities CH60_262 SM01007 Class II Aldolase and Adducin N-terminal domain CH60_2622 SM00729 Elongator protein 3, MiaB family, Radical SAM CH60_2622 SM00876 Biotin and Thiamin Synthesis associated domain CH60_2626 SM00382 ATPases associated with a variety of cellular activities CH60_2631 SM00382 ATPases associated with a variety of cellular activities CH60_2640 SM00855 Phosphoglycerate mutase family CH60_2660 SM01321 CH60_2660 CH60_2661 SM00881 CoA binding domain CH60_2664 SM00861 Transketolase, pyrimidine binding domain CH60_2677 SM01321 CH60_2677 CH60_2684 SM00778 Zinc-binding domain of primase-helicase CH60_269 SM01005 Alanine racemase, C-terminal domain CH60_2691 SM00382 ATPases associated with a variety of cellular activities CH60_2692 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH60_2692 SM00091 PAS domain CH60_2692 SM00267 diguanylate cyclase CH60_2696 SM00357 Cold shock protein domain CH60_27 SM00869 Autotransporter beta-domain CH60_270 SM00382 ATPases associated with a variety of cellular activities CH60_2706 SM00342 helix_turn_helix, arabinose operon control protein CH60_2708 SM00382 ATPases associated with a variety of cellular activities CH60_2709 SM00090 RIO-like kinase CH60_271 SM00829 Enoylreductase CH60_2713 SM00354 helix_turn _helix lactose operon repressor CH60_2722 SM00421 helix_turn_helix, Lux Regulon CH60_2722 SM00448 cheY-homologous receiver domain CH60_2732 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH60_2737 SM00634 Bacterial Ig-like domain (group 1) CH60_2745 SM00382 ATPases associated with a variety of cellular activities CH60_2746 SM00382 ATPases associated with a variety of cellular activities CH60_2759 SM01350 CH60_2759 CH60_2767 SM00382 ATPases associated with a variety of cellular activities CH60_2769 SM01006 Siderophore biosynthesis protein domain CH60_277 SM00563 Phosphate acyltransferases CH60_2773 SM01091 Transporter associated domain CH60_2779 SM01321 CH60_2779 CH60_2787 SM00919 Malic enzyme, NAD binding domain CH60_2787 SM01274 CH60_2787 CH60_2790 SM00382 ATPases associated with a variety of cellular activities CH60_2796 SM00829 Enoylreductase CH60_280 SM00869 Autotransporter beta-domain CH60_2801 SM00382 ATPases associated with a variety of cellular activities CH60_2803 SM00852 Probable molybdopterin binding domain CH60_2807 SM00382 ATPases associated with a variety of cellular activities CH60_281 SM00060 Fibronectin type 3 domain CH60_2827 SM00382 ATPases associated with a variety of cellular activities CH60_2827 SM01086 C-terminal, D2-small domain, of ClpB protein CH60_2837 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH60_2845 SM00825 Beta-ketoacyl synthase CH60_2857 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH60_2858 SM00992 Hemimethylated DNA-binding protein YccV like CH60_2859 SM00881 CoA binding domain CH60_2861 SM00851 MGS-like domain CH60_2868 SM01321 CH60_2868 CH60_2870 SM00487 DEAD-like helicases superfamily CH60_2870 SM00490 helicase superfamily c-terminal domain CH60_2871 SM00363 S4 RNA-binding domain CH60_2874 SM00382 ATPases associated with a variety of cellular activities CH60_2878 SM00052 Putative diguanylate phosphodiesterase CH60_2881 SM00014 Acid phosphatase homologues CH60_2882 SM00833 Cobalamin synthesis protein cobW C-terminal domain CH60_2884 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH60_2884 SM00895 CH60_2884 CH60_2887 SM00841 Elongation factor P, C-terminal CH60_2887 SM01185 CH60_2887 CH60_2897 SM00382 ATPases associated with a variety of cellular activities CH60_2903 SM00862 Transcriptional regulatory protein, C terminal CH60_2908 SM00518 AP endonuclease family 2 CH60_2909 SM00382 ATPases associated with a variety of cellular activities CH60_2920 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH60_2920 SM00895 CH60_2920 CH60_2924 SM00858 CH60_2924 CH60_2926 SM01321 CH60_2926 CH60_2936 SM00220 Serine/Threonine protein kinases, catalytic domain CH60_2938 SM00327 von Willebrand factor (vWF) type A domain CH60_2939 SM00327 von Willebrand factor (vWF) type A domain CH60_2941 SM00327 von Willebrand factor (vWF) type A domain CH60_2943 SM00912 haemagglutination activity domain CH60_2948 SM00869 Autotransporter beta-domain CH60_2951 SM00382 ATPases associated with a variety of cellular activities CH60_2953 SM00354 helix_turn _helix lactose operon repressor CH60_2958 SM01217 CH60_2958 CH60_2986 SM00400 zinc finger CH60_2986 SM00493 CH60_2986 CH60_2986 SM00766 DNA primase DnaG DnaB-binding CH60_2989 SM01207 CH60_2989 CH60_2990 SM00905 Dihydroneopterin aldolase CH60_2992 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH60_2993 SM00287 Bacterial SH3 domain homologues CH60_2994 SM01118 CH60_2994 CH60_300 SM00729 Elongator protein 3, MiaB family, Radical SAM CH60_3010 SM00387 Histidine kinase-like ATPases CH60_3010 SM00433 TopoisomeraseII CH60_3013 SM00434 DNA Topoisomerase IV CH60_3014 SM00563 Phosphate acyltransferases CH60_3020 SM00342 helix_turn_helix, arabinose operon control protein CH60_3039 SM01321 CH60_3039 CH60_3054 SM00382 ATPases associated with a variety of cellular activities CH60_3059 SM00382 ATPases associated with a variety of cellular activities CH60_3063 SM00858 CH60_3063 CH60_3077 SM00862 Transcriptional regulatory protein, C terminal CH60_308 SM00382 ATPases associated with a variety of cellular activities CH60_31 SM00052 Putative diguanylate phosphodiesterase CH60_3107 SM00382 ATPases associated with a variety of cellular activities CH60_3116 SM00912 haemagglutination activity domain CH60_3117 SM01018 B12 binding domain CH60_3118 SM00346 helix_turn_helix isocitrate lyase regulation CH60_3135 SM00798 AICARFT/IMPCHase bienzyme CH60_3135 SM00851 MGS-like domain CH60_3136 SM01209 CH60_3136 CH60_3136 SM01210 CH60_3136 CH60_3138 SM00411 bacterial (prokaryotic) histone like domain CH60_3150 SM00876 Biotin and Thiamin Synthesis associated domain CH60_3151 SM00663 RNA polymerase I subunit A N-terminus CH60_3157 SM00649 Ribosomal protein L11/L12 CH60_3158 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH60_3158 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH60_3165 SM00382 ATPases associated with a variety of cellular activities CH60_3170 SM00420 helix_turn_helix, Deoxyribose operon repressor CH60_3170 SM01134 CH60_3170 CH60_3186 SM00354 helix_turn _helix lactose operon repressor CH60_3189 SM00354 helix_turn _helix lactose operon repressor CH60_3197 SM00382 ATPases associated with a variety of cellular activities CH60_3198 SM00382 ATPases associated with a variety of cellular activities CH60_321 SM00382 ATPases associated with a variety of cellular activities CH60_3219 SM00778 Zinc-binding domain of primase-helicase CH60_3219 SM00885 D5 N terminal like CH60_3220 SM00530 Helix-turn-helix XRE-family like proteins CH60_3222 SM00530 Helix-turn-helix XRE-family like proteins CH60_3228 SM00937 CH60_3228 CH60_3234 SM00387 Histidine kinase-like ATPases CH60_3234 SM00388 His Kinase A (phosphoacceptor) domain CH60_3235 SM00448 cheY-homologous receiver domain CH60_3235 SM00862 Transcriptional regulatory protein, C terminal CH60_3249 SM01011 Aminopeptidase P, N-terminal domain CH60_3261 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH60_3263 SM00861 Transketolase, pyrimidine binding domain CH60_3269 SM00731 SprT homologues. CH60_3274 SM00732 Likely ribonuclease with RNase H fold. CH60_3277 SM00382 ATPases associated with a variety of cellular activities CH60_3281 SM01152 CH60_3281 CH60_3283 SM00729 Elongator protein 3, MiaB family, Radical SAM CH60_329 SM00342 helix_turn_helix, arabinose operon control protein CH60_3293 SM00478 endonuclease III CH60_3293 SM00525 CH60_3293 CH60_3299 SM00382 ATPases associated with a variety of cellular activities CH60_3316 SM00382 ATPases associated with a variety of cellular activities CH60_3316 SM01086 C-terminal, D2-small domain, of ClpB protein CH60_3329 SM00421 helix_turn_helix, Lux Regulon CH60_333 SM00387 Histidine kinase-like ATPases CH60_333 SM00388 His Kinase A (phosphoacceptor) domain CH60_333 SM00448 cheY-homologous receiver domain CH60_3336 SM01006 Siderophore biosynthesis protein domain CH60_334 SM00421 helix_turn_helix, Lux Regulon CH60_334 SM00448 cheY-homologous receiver domain CH60_3342 SM00354 helix_turn _helix lactose operon repressor CH60_3349 SM00869 Autotransporter beta-domain CH60_3350 SM00869 Autotransporter beta-domain CH60_3356 SM00382 ATPases associated with a variety of cellular activities CH60_3357 SM00382 ATPases associated with a variety of cellular activities CH60_3364 SM00823 Phosphopantetheine attachment site CH60_3364 SM00825 Beta-ketoacyl synthase CH60_3369 SM00382 ATPases associated with a variety of cellular activities CH60_3372 SM00364 Leucine-rich repeats, bacterial type CH60_3372 SM00369 Leucine-rich repeats, typical (most populated) subfamily CH60_3373 SM00364 Leucine-rich repeats, bacterial type CH60_3374 SM00364 Leucine-rich repeats, bacterial type CH60_3375 SM00869 Autotransporter beta-domain CH60_3380 SM00052 Putative diguanylate phosphodiesterase CH60_3380 SM00091 PAS domain CH60_3380 SM00267 diguanylate cyclase CH60_3389 SM00382 ATPases associated with a variety of cellular activities CH60_3389 SM01086 C-terminal, D2-small domain, of ClpB protein CH60_3400 SM00860 SMI1 / KNR4 family CH60_3403 SM00530 Helix-turn-helix XRE-family like proteins CH60_3411 SM00342 helix_turn_helix, arabinose operon control protein CH60_3414 SM01133 CH60_3414 CH60_342 SM00382 ATPases associated with a variety of cellular activities CH60_3420 SM00382 ATPases associated with a variety of cellular activities CH60_3427 SM00382 ATPases associated with a variety of cellular activities CH60_343 SM00830 Chorismate mutase type II CH60_3435 SM01321 CH60_3435 CH60_3436 SM00357 Cold shock protein domain CH60_3437 SM00357 Cold shock protein domain CH60_3439 SM00849 Metallo-beta-lactamase superfamily CH60_344 SM00830 Chorismate mutase type II CH60_3443 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH60_3443 SM00895 CH60_3443 CH60_3451 SM00878 Biotin carboxylase C-terminal domain CH60_3456 SM00829 Enoylreductase CH60_3457 SM00052 Putative diguanylate phosphodiesterase CH60_3457 SM00267 diguanylate cyclase CH60_346 SM00448 cheY-homologous receiver domain CH60_346 SM00850 LytTr DNA-binding domain CH60_3462 SM00316 Ribosomal protein S1-like RNA-binding domain CH60_3488 SM00642 Alpha-amylase domain CH60_3490 SM00354 helix_turn _helix lactose operon repressor CH60_3500 SM00382 ATPases associated with a variety of cellular activities CH60_3504 SM00116 Domain in cystathionine beta-synthase and other proteins. CH60_3506 SM00382 ATPases associated with a variety of cellular activities CH60_3513 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH60_3514 SM01321 CH60_3514 CH60_3515 SM00917 LeuA allosteric (dimerisation) domain CH60_3516 SM01329 CH60_3516 CH60_3519 SM00382 ATPases associated with a variety of cellular activities CH60_3528 SM00382 ATPases associated with a variety of cellular activities CH60_3530 SM00486 DNA polymerase type-B family CH60_3531 SM00487 DEAD-like helicases superfamily CH60_3531 SM00490 helicase superfamily c-terminal domain CH60_354 SM00382 ATPases associated with a variety of cellular activities CH60_354 SM00962 SRP54-type protein, GTPase domain CH60_354 SM00963 SRP54-type protein, helical bundle domain CH60_3543 SM00382 ATPases associated with a variety of cellular activities CH60_3543 SM01086 C-terminal, D2-small domain, of ClpB protein CH60_3553 SM00271 DnaJ molecular chaperone homology domain CH60_3557 SM00650 Ribosomal RNA adenine dimethylases CH60_356 SM01091 Transporter associated domain CH60_3565 SM00851 MGS-like domain CH60_3565 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH60_3566 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CH60_3568 SM01321 CH60_3568 CH60_3573 SM00904 Riboflavin kinase CH60_3577 SM00271 DnaJ molecular chaperone homology domain CH60_3582 SM00852 Probable molybdopterin binding domain CH60_3592 SM00448 cheY-homologous receiver domain CH60_3592 SM00862 Transcriptional regulatory protein, C terminal CH60_3595 SM00855 Phosphoglycerate mutase family CH60_3596 SM00342 helix_turn_helix, arabinose operon control protein CH60_3596 SM00871 Bacterial transcription activator, effector binding domain CH60_3600 SM00831 Cation transporter/ATPase, N-terminus CH60_3602 SM00267 diguanylate cyclase CH60_3604 SM00382 ATPases associated with a variety of cellular activities CH60_3606 SM00530 Helix-turn-helix XRE-family like proteins CH60_3607 SM00382 ATPases associated with a variety of cellular activities CH60_3612 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CH60_3613 SM01133 CH60_3613 CH60_3618 SM00749 bacterial OsmY and nodulation domain CH60_3625 SM00267 diguanylate cyclase CH60_3635 SM00382 ATPases associated with a variety of cellular activities CH60_3639 SM01133 CH60_3639 CH60_3645 SM00342 helix_turn_helix, arabinose operon control protein CH60_366 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH60_3660 SM00382 ATPases associated with a variety of cellular activities CH60_3663 SM00382 ATPases associated with a variety of cellular activities CH60_3666 SM00957 SecA DEAD-like domain CH60_3666 SM00958 SecA preprotein cross-linking domain CH60_3670 SM00864 Tubulin/FtsZ family, GTPase domain CH60_3670 SM00865 Tubulin/FtsZ family, C-terminal domain CH60_3671 SM00842 Cell division protein FtsA CH60_368 SM00382 ATPases associated with a variety of cellular activities CH60_3686 SM00354 helix_turn _helix lactose operon repressor CH60_3687 SM01321 CH60_3687 CH60_3693 SM01321 CH60_3693 CH60_3694 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH60_3704 SM00729 Elongator protein 3, MiaB family, Radical SAM CH60_3705 SM00073 Histidine Phosphotransfer domain CH60_3705 SM00091 PAS domain CH60_3705 SM00387 Histidine kinase-like ATPases CH60_3705 SM00388 His Kinase A (phosphoacceptor) domain CH60_3705 SM00448 cheY-homologous receiver domain CH60_3708 SM00749 bacterial OsmY and nodulation domain CH60_3716 SM00382 ATPases associated with a variety of cellular activities CH60_3737 SM00382 ATPases associated with a variety of cellular activities CH60_374 SM00861 Transketolase, pyrimidine binding domain CH60_3748 SM00382 ATPases associated with a variety of cellular activities CH60_3749 SM00382 ATPases associated with a variety of cellular activities CH60_3754 SM01321 CH60_3754 CH60_3757 SM00382 ATPases associated with a variety of cellular activities CH60_3758 SM00382 ATPases associated with a variety of cellular activities CH60_3758 SM00962 SRP54-type protein, GTPase domain CH60_3758 SM00963 SRP54-type protein, helical bundle domain CH60_377 SM00382 ATPases associated with a variety of cellular activities CH60_3777 SM00341 Helicase and RNase D C-terminal CH60_3777 SM00487 DEAD-like helicases superfamily CH60_3777 SM00490 helicase superfamily c-terminal domain CH60_3777 SM00956 CH60_3777 CH60_3791 SM01219 CH60_3791 CH60_3797 SM01321 CH60_3797 CH60_3812 SM00984 UDP binding domain CH60_3816 SM00357 Cold shock protein domain CH60_3816 SM00382 ATPases associated with a variety of cellular activities CH60_3816 SM00959 Rho termination factor, N-terminal domain CH60_3818 SM00487 DEAD-like helicases superfamily CH60_3818 SM00490 helicase superfamily c-terminal domain CH60_3829 SM00507 HNH nucleases CH60_3845 SM00382 ATPases associated with a variety of cellular activities CH60_3850 SM00382 ATPases associated with a variety of cellular activities CH60_386 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH60_387 SM01007 Class II Aldolase and Adducin N-terminal domain CH60_3870 SM00382 ATPases associated with a variety of cellular activities CH60_3876 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH60_388 SM00420 helix_turn_helix, Deoxyribose operon repressor CH60_388 SM01134 CH60_388 CH60_3894 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH60_3897 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH60_3897 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH60_3897 SM01358 CH60_3897 CH60_390 SM00382 ATPases associated with a variety of cellular activities CH60_3915 SM00642 Alpha-amylase domain CH60_3930 SM00387 Histidine kinase-like ATPases CH60_3930 SM00433 TopoisomeraseII CH60_3932 SM00480 DNA polymerase III beta subunit CH60_3933 SM00382 ATPases associated with a variety of cellular activities CH60_3933 SM00760 Bacterial dnaA protein helix-turn-helix domain CH60_3937 SM01234 CH60_3937 CH60_3947 SM00062 Bacterial periplasmic substrate-binding proteins CH60_3950 SM00382 ATPases associated with a variety of cellular activities CH60_3957 SM00382 ATPases associated with a variety of cellular activities CH60_3966 SM01228 CH60_3966 CH60_3968 SM00344 helix_turn_helix ASNC type CH60_3970 SM00327 von Willebrand factor (vWF) type A domain CH60_3971 SM00382 ATPases associated with a variety of cellular activities CH60_3977 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH60_3977 SM00895 CH60_3977 CH60_3988 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH60_3988 SM00474 3'-5' exonuclease CH60_3988 SM00475 5'-3' exonuclease CH60_3988 SM00482 DNA polymerase A domain CH60_3991 SM00729 Elongator protein 3, MiaB family, Radical SAM CH60_3992 SM00382 ATPases associated with a variety of cellular activities CH60_3992 SM00448 cheY-homologous receiver domain CH60_3993 SM00091 PAS domain CH60_3993 SM00387 Histidine kinase-like ATPases CH60_3993 SM00388 His Kinase A (phosphoacceptor) domain CH60_3994 SM01230 CH60_3994 CH60_3999 SM00382 ATPases associated with a variety of cellular activities CH60_40 SM00052 Putative diguanylate phosphodiesterase CH60_40 SM00267 diguanylate cyclase CH60_4005 SM00487 DEAD-like helicases superfamily CH60_4005 SM00490 helicase superfamily c-terminal domain CH60_4007 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH60_4007 SM00954 Region found in RelA / SpoT proteins CH60_4008 SM01409 CH60_4008 CH60_4009 SM00072 Guanylate kinase homologues. CH60_4010 SM00532 Ligase N family CH60_4021 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CH60_4021 SM01232 CH60_4021 CH60_4029 SM00829 Enoylreductase CH60_403 SM01235 CH60_403 CH60_4034 SM00450 Rhodanese Homology Domain CH60_4038 SM00971 Serine acetyltransferase, N-terminal CH60_404 SM00062 Bacterial periplasmic substrate-binding proteins CH60_4040 SM00342 helix_turn_helix, arabinose operon control protein CH60_4041 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH60_4041 SM00387 Histidine kinase-like ATPases CH60_4041 SM00388 His Kinase A (phosphoacceptor) domain CH60_4042 SM00448 cheY-homologous receiver domain CH60_4042 SM00862 Transcriptional regulatory protein, C terminal CH60_4062 SM01321 CH60_4062 CH60_4063 SM00382 ATPases associated with a variety of cellular activities CH60_4069 SM00382 ATPases associated with a variety of cellular activities CH60_4069 SM01086 C-terminal, D2-small domain, of ClpB protein CH60_407 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH60_4072 SM00354 helix_turn _helix lactose operon repressor CH60_4074 SM00487 DEAD-like helicases superfamily CH60_4074 SM00490 helicase superfamily c-terminal domain CH60_4092 SM00382 ATPases associated with a variety of cellular activities CH60_4094 SM00342 helix_turn_helix, arabinose operon control protein CH60_410 SM01120 CH60_410 CH60_4101 SM00530 Helix-turn-helix XRE-family like proteins CH60_4103 SM00382 ATPases associated with a variety of cellular activities CH60_4116 SM00382 ATPases associated with a variety of cellular activities CH60_4118 SM01004 Delta-aminolevulinic acid dehydratase CH60_4119 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH60_4119 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH60_413 SM00829 Enoylreductase CH60_4137 SM00382 ATPases associated with a variety of cellular activities CH60_4145 SM00642 Alpha-amylase domain CH60_4146 SM00642 Alpha-amylase domain CH60_4148 SM00257 Lysin motif CH60_4148 SM00634 Bacterial Ig-like domain (group 1) CH60_415 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CH60_415 SM00534 ATPase domain of DNA mismatch repair MUTS family CH60_4153 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH60_4160 SM00354 helix_turn _helix lactose operon repressor CH60_4161 SM00232 JAB/MPN domain CH60_4167 SM00635 Bacterial Ig-like domain 2 CH60_417 SM00257 Lysin motif CH60_4173 SM00635 Bacterial Ig-like domain 2 CH60_4182 SM00382 ATPases associated with a variety of cellular activities CH60_4183 SM00470 ParB-like nuclease domain CH60_4184 SM00470 ParB-like nuclease domain CH60_4185 SM00487 DEAD-like helicases superfamily CH60_4185 SM00490 helicase superfamily c-terminal domain CH60_4194 SM01321 CH60_4194 CH60_42 SM00382 ATPases associated with a variety of cellular activities CH60_4203 SM00062 Bacterial periplasmic substrate-binding proteins CH60_4211 SM00244 prohibitin homologues CH60_4215 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH60_4215 SM00475 5'-3' exonuclease CH60_4224 SM00382 ATPases associated with a variety of cellular activities CH60_4225 SM00481 DNA polymerase alpha chain like domain CH60_4234 SM00342 helix_turn_helix, arabinose operon control protein CH60_4242 SM00382 ATPases associated with a variety of cellular activities CH60_4244 SM00470 ParB-like nuclease domain CH60_4252 SM00382 ATPases associated with a variety of cellular activities CH60_4253 SM00470 ParB-like nuclease domain CH60_4257 SM00857 Resolvase, N terminal domain CH60_4260 SM00155 Phospholipase D. Active site motifs. CH60_4266 SM00382 ATPases associated with a variety of cellular activities CH60_4274 SM00382 ATPases associated with a variety of cellular activities CH60_4283 SM00342 helix_turn_helix, arabinose operon control protein CH60_4299 SM00194 Protein tyrosine phosphatase, catalytic domain CH60_4299 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH60_43 SM00382 ATPases associated with a variety of cellular activities CH60_4302 SM00220 Serine/Threonine protein kinases, catalytic domain CH60_4320 SM00857 Resolvase, N terminal domain CH60_4339 SM00470 ParB-like nuclease domain CH60_4352 SM00364 Leucine-rich repeats, bacterial type CH60_4365 SM00382 ATPases associated with a variety of cellular activities CH60_4369 SM00530 Helix-turn-helix XRE-family like proteins CH60_439 SM01192 CH60_439 CH60_439 SM01193 CH60_439 CH60_442 SM00954 Region found in RelA / SpoT proteins CH60_443 SM00073 Histidine Phosphotransfer domain CH60_443 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH60_443 SM00387 Histidine kinase-like ATPases CH60_443 SM00388 His Kinase A (phosphoacceptor) domain CH60_443 SM00448 cheY-homologous receiver domain CH60_444 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH60_445 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH60_454 SM00382 ATPases associated with a variety of cellular activities CH60_456 SM00487 DEAD-like helicases superfamily CH60_456 SM00490 helicase superfamily c-terminal domain CH60_456 SM00847 Helicase associated domain (HA2) Add an annotation CH60_469 SM00382 ATPases associated with a variety of cellular activities CH60_470 SM00947 Carbonic anhydrase CH60_479 SM01321 CH60_479 CH60_483 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH60_483 SM00895 CH60_483 CH60_486 SM00644 CH60_486 CH60_49 SM00912 haemagglutination activity domain CH60_491 SM01240 CH60_491 CH60_495 SM01321 CH60_495 CH60_497 SM00382 ATPases associated with a variety of cellular activities CH60_507 SM00116 Domain in cystathionine beta-synthase and other proteins. CH60_507 SM01091 Transporter associated domain CH60_52 SM00387 Histidine kinase-like ATPases CH60_525 SM00387 Histidine kinase-like ATPases CH60_525 SM00388 His Kinase A (phosphoacceptor) domain CH60_526 SM00448 cheY-homologous receiver domain CH60_526 SM00862 Transcriptional regulatory protein, C terminal CH60_529 SM01103 CH60_529 CH60_53 SM00421 helix_turn_helix, Lux Regulon CH60_53 SM00448 cheY-homologous receiver domain CH60_531 SM00382 ATPases associated with a variety of cellular activities CH60_538 SM00316 Ribosomal protein S1-like RNA-binding domain CH60_538 SM00322 K homology RNA-binding domain CH60_542 SM01387 CH60_542 CH60_545 SM00316 Ribosomal protein S1-like RNA-binding domain CH60_545 SM00322 K homology RNA-binding domain CH60_546 SM00028 Tetratricopeptide repeats CH60_547 SM00487 DEAD-like helicases superfamily CH60_547 SM00490 helicase superfamily c-terminal domain CH60_549 SM00530 Helix-turn-helix XRE-family like proteins CH60_569 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH60_57 SM00382 ATPases associated with a variety of cellular activities CH60_570 SM00849 Metallo-beta-lactamase superfamily CH60_571 SM00072 Guanylate kinase homologues. CH60_573 SM00382 ATPases associated with a variety of cellular activities CH60_574 SM00382 ATPases associated with a variety of cellular activities CH60_579 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH60_579 SM00866 CH60_579 CH60_583 SM00382 ATPases associated with a variety of cellular activities CH60_584 SM00382 ATPases associated with a variety of cellular activities CH60_60 SM00420 helix_turn_helix, Deoxyribose operon repressor CH60_60 SM01134 CH60_60 CH60_602 SM00382 ATPases associated with a variety of cellular activities CH60_604 SM01321 CH60_604 CH60_607 SM00363 S4 RNA-binding domain CH60_609 SM00382 ATPases associated with a variety of cellular activities CH60_609 SM01086 C-terminal, D2-small domain, of ClpB protein CH60_617 SM00155 Phospholipase D. Active site motifs. CH60_618 SM00881 CoA binding domain CH60_619 SM01144 CH60_619 CH60_62 SM00450 Rhodanese Homology Domain CH60_621 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH60_624 SM00347 helix_turn_helix multiple antibiotic resistance protein CH60_63 SM00421 helix_turn_helix, Lux Regulon CH60_632 SM00062 Bacterial periplasmic substrate-binding proteins CH60_635 SM00382 ATPases associated with a variety of cellular activities CH60_637 SM00382 ATPases associated with a variety of cellular activities CH60_643 SM00382 ATPases associated with a variety of cellular activities CH60_648 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH60_648 SM00866 CH60_648 CH60_678 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH60_678 SM00465 GIY-YIG type nucleases (URI domain) CH60_679 SM00421 helix_turn_helix, Lux Regulon CH60_679 SM00448 cheY-homologous receiver domain CH60_696 SM00382 ATPases associated with a variety of cellular activities CH60_698 SM00062 Bacterial periplasmic substrate-binding proteins CH60_698 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH60_706 SM00342 helix_turn_helix, arabinose operon control protein CH60_709 SM00478 endonuclease III CH60_716 SM00382 ATPases associated with a variety of cellular activities CH60_730 SM00382 ATPases associated with a variety of cellular activities CH60_733 SM01007 Class II Aldolase and Adducin N-terminal domain CH60_737 SM00047 Lysozyme subfamily 2 CH60_74 SM00899 CH60_74 CH60_746 SM00858 CH60_746 CH60_749 SM00634 Bacterial Ig-like domain (group 1) CH60_75 SM00316 Ribosomal protein S1-like RNA-binding domain CH60_75 SM00732 Likely ribonuclease with RNase H fold. CH60_750 SM01321 CH60_750 CH60_765 SM01022 CH60_765 CH60_767 SM00487 DEAD-like helicases superfamily CH60_767 SM00490 helicase superfamily c-terminal domain CH60_77 SM00448 cheY-homologous receiver domain CH60_77 SM00862 Transcriptional regulatory protein, C terminal CH60_773 SM00903 Flavin reductase like domain CH60_78 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH60_78 SM00387 Histidine kinase-like ATPases CH60_78 SM00388 His Kinase A (phosphoacceptor) domain CH60_784 SM00347 helix_turn_helix multiple antibiotic resistance protein CH60_785 SM01091 Transporter associated domain CH60_793 SM00382 ATPases associated with a variety of cellular activities CH60_796 SM00195 Dual specificity phosphatase, catalytic domain CH60_796 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH60_798 SM00563 Phosphate acyltransferases CH60_8 SM00382 ATPases associated with a variety of cellular activities CH60_808 SM01321 CH60_808 CH60_81 SM00363 S4 RNA-binding domain CH60_810 SM00840 CH60_810 CH60_813 SM01001 AIR carboxylase CH60_816 SM00382 ATPases associated with a variety of cellular activities CH60_818 SM00822 CH60_818 CH60_820 SM00244 prohibitin homologues CH60_822 SM00422 helix_turn_helix, mercury resistance CH60_857 SM00387 Histidine kinase-like ATPases CH60_858 SM00493 CH60_858 CH60_860 SM00382 ATPases associated with a variety of cellular activities CH60_878 SM00938 Nitrogen regulatory protein P-II CH60_879 SM00382 ATPases associated with a variety of cellular activities CH60_880 SM00382 ATPases associated with a variety of cellular activities CH60_881 SM00344 helix_turn_helix ASNC type CH60_889 SM00411 bacterial (prokaryotic) histone like domain CH60_890 SM00382 ATPases associated with a variety of cellular activities CH60_890 SM00464 Found in ATP-dependent protease La (LON) CH60_891 SM00382 ATPases associated with a variety of cellular activities CH60_891 SM00994 ClpX C4-type zinc finger CH60_891 SM01086 C-terminal, D2-small domain, of ClpB protein CH60_9 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH60_9 SM00387 Histidine kinase-like ATPases CH60_9 SM00388 His Kinase A (phosphoacceptor) domain CH60_9 SM00448 cheY-homologous receiver domain CH60_908 SM00981 CH60_908 CH60_911 SM00861 Transketolase, pyrimidine binding domain CH60_912 SM01321 CH60_912 CH60_921 SM01321 CH60_921 CH60_924 SM01323 CH60_924 CH60_932 SM00642 Alpha-amylase domain CH60_936 SM00091 PAS domain CH60_936 SM00387 Histidine kinase-like ATPases CH60_936 SM00388 His Kinase A (phosphoacceptor) domain CH60_937 SM00448 cheY-homologous receiver domain CH60_937 SM00862 Transcriptional regulatory protein, C terminal CH60_949 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH60_954 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CH60_964 SM00900 CH60_964 CH60_973 SM00710 Parallel beta-helix repeats CH60_973 SM00912 haemagglutination activity domain CH60_978 SM00382 ATPases associated with a variety of cellular activities CH60_988 SM01081 Putative carbohydrate binding domain