locus_tag old_locus_tag gene Name start end strand product note type ID NCBI CH60_1 CH60_1 CH60_1 809 1021 - hypothetical protein conserved hypothetical protein gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1 CH60_10 CH60_10 CH60_10 11387 12583 - flavo%2C family protein flavo%2C HI0933 family protein~[R] COG2081 Predicted flavoproteins gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_10 CH60_100 CH60_100 CH60_100 120974 121780 - putative nitrite transporter [P] COG2116 Formate/nitrite family of transporters gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_100 CH60_1000 CH60_1000 CH60_1000 1047126 1047200 + tRNA-Gln tRNA gene991 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1000 CH60_1001 CH60_1001 CH60_1001 1047233 1047309 + tRNA-Met tRNA gene992 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1001 CH60_1002 CH60_1002 CH60_1002 1047315 1047389 + tRNA-Gln tRNA gene993 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1002 CH60_1003 CH60_1003 CH60_1003 1047783 1048964 - ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 family protein ubi-OHases: ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 family protein~[HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1003 CH60_1004 CH60_1004 miaB miaB 1049206 1050630 + tRNA-i(6)A37 thiotransferase enzyme MiaB miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB~[J] COG0621 2-methylthioadenine synthetase gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1004 CH60_1005 CH60_1005 ybeZ ybeZ 1050975 1052030 + phoH-like protein [T] COG1702 Phosphate starvation-inducible protein PhoH%2C predicted ATPase gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1005 CH60_1006 CH60_1006 CH60_1006 1052027 1052500 + putative rRNA maturation factor YbeY [R] COG0319 Predicted metal-dependent hydrolase gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1006 CH60_1007 CH60_1007 corC corC 1052618 1053496 + magnesium and cobalt efflux protein CorC [P] COG4535 Putative Mg2+ and Co2+ transporter CorC gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1007 CH60_1008 CH60_1008 lnt lnt 1053504 1055051 + apolipoprotein N-acyltransferase lnt: apolipoprotein N-acyltransferase~[M] COG0815 Apolipoprotein N-acyltransferase gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1008 CH60_1009 CH60_1009 CH60_1009 1055816 1056733 + bacterial extracellular solute-binding s%2C 3 family protein [ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1009 CH60_101 CH60_101 nirD nirD 121959 122285 - nitrite reductase [NAD(P)H] small subunit [PR] COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_101 CH60_1010 CH60_1010 CH60_1010 1056907 1057647 + amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG0765 ABC-type amino acid transport system%2C permease component gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1010 CH60_1011 CH60_1011 CH60_1011 1057647 1058321 + amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG0765 ABC-type amino acid transport system%2C permease component gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1011 CH60_1012 CH60_1012 CH60_1012 1058321 1059046 + ABC transporter family protein [E] COG1126 ABC-type polar amino acid transport system%2C ATPase component gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1012 CH60_1013 CH60_1013 CH60_1013 1059180 1059662 - hypothetical protein conserved hypothetical protein gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1013 CH60_1014 CH60_1014 leuS leuS 1059923 1062505 + leucine--tRNA ligase leuS_bact: leucine--tRNA ligase~[J] COG0495 Leucyl-tRNA synthetase gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1014 CH60_1015 CH60_1015 CH60_1015 1062520 1063143 + lipopolysaccharide-assembly family protein [M] COG2980 Rare lipoprotein B gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1015 CH60_1016 CH60_1016 holA holA 1063140 1064174 + DNA polymerase III%2C delta subunit holA: DNA polymerase III%2C delta subunit~[L] COG1466 DNA polymerase III%2C delta subunit gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1016 CH60_1017 CH60_1017 nadD nadD 1064164 1064826 + nicotinate (nicotinamide) nucleotide adenylyltransferase [H] COG1057 Nicotinic acid mononucleotide adenylyltransferase gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1017 CH60_1018 CH60_1018 rsfS rsfS 1065050 1065367 + ribosome silencing factor rsfS_iojap_ybeB: ribosome silencing factor~[S] COG0799 Uncharacterized homolog of plant Iojap protein gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1018 CH60_1019 CH60_1019 rlmH rlmH 1065371 1065841 + rRNA large subunit m3Psi methyltransferase RlmH tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH~[S] COG1576 Uncharacterized conserved protein gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1019 CH60_102 CH60_102 nirB nirB 122282 124828 - nitrite reductase [NAD(P)H]%2C large subunit nitri_red_nirB: nitrite reductase [NAD(P)H]%2C large subunit~[C] COG1251 NAD(P)H-nitrite reductase gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_102 CH60_1020 CH60_1020 mrdA mrdA 1065923 1067818 + penicillin-binding protein 2 pbp2_mrdA: penicillin-binding protein 2~[M] COG0768 Cell division protein FtsI/penicillin-binding protein 2 gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1020 CH60_1021 CH60_1021 mrdB mrdB 1067989 1069101 + rod shape-determining protein RodA rodA_shape: rod shape-determining protein RodA~[D] COG0772 Bacterial cell division membrane protein gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1021 CH60_1022 CH60_1022 rlpA rlpA 1069111 1070193 + rare lipoA family protein rlpA: rare lipoA family protein~[M] COG0797 Lipoproteins gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1022 CH60_1023 CH60_1023 CH60_1023 1070596 1071798 + D-alanyl-D-alanine carboxypeptidase family protein [M] COG1686 D-alanyl-D-alanine carboxypeptidase gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1023 CH60_1024 CH60_1024 CH60_1024 1071996 1072259 + hypothetical protein conserved hypothetical protein~[S] COG2921 Uncharacterized conserved protein gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1024 CH60_1025 CH60_1025 lipB lipB 1072474 1073172 + lipoyl(octanoyl) transferase lipB: lipoyl(octanoyl) transferase~[H] COG0321 Lipoate-protein ligase B gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1025 CH60_1026 CH60_1026 lipA lipA 1073365 1074330 + lipoyl synthase lipA: lipoyl synthase~[H] COG0320 Lipoate synthase gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1026 CH60_1027 CH60_1027 tatA tatA 1074511 1074768 - twin arginine-targeting translocase%2C TatA/E family protein tatAE: twin arginine-targeting translocase%2C TatA/E family protein~[U] COG1826 Sec-independent protein secretion pathway components gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1027 CH60_1028 CH60_1028 crcB crcB 1075335 1075718 + protein CrcB [D] COG0239 Integral membrane protein possibly involved in chromosome condensation gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1028 CH60_1029 CH60_1029 cspE cspE 1076141 1076350 - RNA chaperone%2C negative regulator of cspA transcription [K] COG1278 Cold shock proteins gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1029 CH60_103 CH60_103 CH60_103 125150 126448 + amidohydrolase family protein [FR] COG0402 Cytosine deaminase and related metal-dependent hydrolases gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_103 CH60_1030 CH60_1030 CH60_1030 1076629 1077108 + putative cold-shock protein gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1030 CH60_1031 CH60_1031 CH60_1031 1077418 1078008 - bacterial regulatory s%2C luxR family protein [K] COG2771 DNA-binding HTH domain-containing proteins gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1031 CH60_1032 CH60_1032 CH60_1032 1078458 1079423 + putative membrane protein [S] COG3274 Uncharacterized protein conserved in bacteria gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1032 CH60_1033 CH60_1033 CH60_1033 1079605 1079787 + hypothetical protein conserved hypothetical protein gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1033 CH60_1034 CH60_1034 CH60_1034 1079805 1079999 - glycogen synthesis family protein gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1034 CH60_1035 CH60_1035 CH60_1035 1080442 1080729 + antibiotic biosynthesis monooxygenase family protein [S] COG1359 Uncharacterized conserved protein gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1035 CH60_1036 CH60_1036 CH60_1036 1080745 1082535 - ABC transporter family protein [O] COG5265 ABC-type transport system involved in Fe-S cluster assembly%2C permease and ATPase components gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1036 CH60_1037 CH60_1037 CH60_1037 1082743 1082946 - putative membrane protein gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1037 CH60_1038 CH60_1038 iolB iolB 1083105 1083920 - 5-deoxy-glucuronate isomerase myo_inos_iolB: 5-deoxy-glucuronate isomerase~[G] COG3718 Uncharacterized enzyme involved in inositol metabolism gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1038 CH60_1039 CH60_1039 iolE iolE 1083930 1084982 - myo-inosose-2 dehydratase myo_inos_iolE: myo-inosose-2 dehydratase~[G] COG1082 Sugar phosphate isomerases/epimerases gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1039 CH60_104 CH60_104 CH60_104 126533 127717 - major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_104 CH60_1040 CH60_1040 iolC iolC 1085003 1086973 - 5-dehydro-2-deoxygluconokinase myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase~[G] COG0524 Sugar kinases%2C ribokinase family gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1040 CH60_1041 CH60_1041 CH60_1041 1087005 1088138 - hypothetical protein oxidoreductase family%2C C-terminal alpha/beta domain protein~[R] COG0673 Predicted dehydrogenases and related proteins gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1041 CH60_1042 CH60_1042 CH60_1042 1088162 1089190 - branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1042 CH60_1043 CH60_1043 CH60_1043 1089202 1090749 - ABC transporter family protein [G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1043 CH60_1044 CH60_1044 CH60_1044 1090798 1091727 - periplasmic binding domain protein [G] COG1879 ABC-type sugar transport system%2C periplasmic component gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1044 CH60_1045 CH60_1045 CH60_1045 1091853 1092332 - hypothetical protein oxidoreductase family%2C C-terminal alpha/beta domain protein~[R] COG0673 Predicted dehydrogenases and related proteins gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1045 CH60_1046 CH60_1046 CH60_1046 1092329 1092838 - oxidoreductase%2C NAD-binding Rossmann fold family protein [R] COG0673 Predicted dehydrogenases and related proteins gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1046 CH60_1047 CH60_1047 iolD iolD 1093132 1095057 - 3%2C5/4-trihydroxycyclohexa-1%2C2-dione hydrolase myo_inos_iolD: 3%2C5/4-trihydroxycyclohexa-1%2C2-dione hydrolase~[E] COG3962 Acetolactate synthase gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1047 CH60_1048 CH60_1048 mmsA mmsA 1095092 1096618 - methylmalonate-semialdehyde dehydrogenase MMSDH: methylmalonate-semialdehyde dehydrogenase~[C] COG1012 NAD-dependent aldehyde dehydrogenases gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1048 CH60_1049 CH60_1049 CH60_1049 1096824 1096961 + hypothetical protein gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1049 CH60_105 CH60_105 CH60_105 128203 130248 + TonB-dependent copper receptor tonB-copper: TonB-dependent copper receptor~[P] COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_105 CH60_1050 CH60_1050 CH60_1050 1096961 1097815 + SIS domain protein [K] COG1737 Transcriptional regulators gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1050 CH60_1051 CH60_1051 CH60_1051 1098448 1098996 + hypothetical protein conserved hypothetical protein~[S] COG3477 Predicted periplasmic/secreted protein gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1051 CH60_1052 CH60_1052 CH60_1052 1099102 1099266 - hypothetical protein conserved hypothetical protein gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1052 CH60_1053 CH60_1053 CH60_1053 1099403 1105381 + MG2 domain protein [R] COG2373 Large extracellular alpha-helical protein gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1053 CH60_1054 CH60_1054 pbpC pbpC 1105456 1107801 + penicillin-binding protein 1C PBP_1c: penicillin-binding protein 1C~[M] COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1054 CH60_1055 CH60_1055 CH60_1055 1108014 1108259 - winged helix-turn-helix DNA-binding family protein [K] COG3423 Predicted transcriptional regulator gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1055 CH60_1056 CH60_1056 CH60_1056 1108364 1108474 + putative membrane protein gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1056 CH60_1057 CH60_1057 CH60_1057 1108932 1109513 + putative membrane protein gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1057 CH60_1058 CH60_1058 CH60_1058 1109781 1110182 + hypothetical protein conserved hypothetical protein gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1058 CH60_1059 CH60_1059 CH60_1059 1110561 1110815 + hypothetical protein conserved hypothetical protein gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1059 CH60_106 CH60_106 CH60_106 130349 131335 - helix-turn-helix family protein [K] COG1609 Transcriptional regulators gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_106 CH60_1060 CH60_1060 CH60_1060 1110827 1111399 - type VI secretion system effector%2C Hcp1 family protein VI_effect_Hcp1: type VI secretion system effector%2C Hcp1 family protein~[S] COG3157 Hemolysin-coregulated protein (uncharacterized) gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1060 CH60_1061 CH60_1061 CH60_1061 1111423 1111674 - hypothetical protein conserved hypothetical protein gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1061 CH60_1062 CH60_1062 CH60_1062 1111713 1111952 - hypothetical protein conserved hypothetical protein gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1062 CH60_1063 CH60_1063 CH60_1063 1112761 1114677 + outer membrane autotransporter barrel domain protein autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1063 CH60_1064 CH60_1064 CH60_1064 1115027 1115608 + hypothetical protein conserved hypothetical protein gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1064 CH60_1065 CH60_1065 CH60_1065 1115623 1115931 - putative cytoplasmic protein [S] COG2850 Uncharacterized conserved protein gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1065 CH60_1066 CH60_1066 CH60_1066 1116195 1116449 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1066 CH60_1067 CH60_1067 CH60_1067 1116536 1117216 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1067 CH60_1068 CH60_1068 CH60_1068 1117668 1119875 + hypothetical protein conserved hypothetical protein~[S] COG4984 Predicted membrane protein gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1068 CH60_1069 CH60_1069 CH60_1069 1119868 1120398 + GDYXXLXY family protein [S] COG4929 Uncharacterized membrane-anchored protein gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1069 CH60_107 CH60_107 CH60_107 131584 132897 - hypothetical protein family 4 glycosyl hydrolase C-terminal domain protein~[G] COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases%2C family 4 of glycosyl hydrolases gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_107 CH60_1070 CH60_1070 bglB bglB 1120557 1122938 + thermostable beta-glucosidase B [G] COG1472 Beta-glucosidase-related glycosidases gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1070 CH60_1071 CH60_1071 CH60_1071 1123017 1124645 - hypothetical protein conserved hypothetical protein gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1071 CH60_1072 CH60_1072 CH60_1072 1125118 1125969 + aldo/keto reductase family protein [R] COG0656 Aldo/keto reductases%2C related to diketogulonate reductase gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1072 CH60_1073 CH60_1073 CH60_1073 1125995 1126984 + aldo/keto reductase family protein [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1073 CH60_1074 CH60_1074 CH60_1074 1127039 1127932 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1074 CH60_1075 CH60_1075 CH60_1075 1128026 1129048 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1075 CH60_1076 CH60_1076 CH60_1076 1129048 1129827 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1076 CH60_1077 CH60_1077 CH60_1077 1129843 1130871 + hypothetical protein thiolase%2C N-terminal domain protein~[IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1077 CH60_1078 CH60_1078 CH60_1078 1130988 1131446 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1078 CH60_1079 CH60_1079 CH60_1079 1132081 1132677 - hypothetical protein conserved hypothetical protein~[S] COG3009 Uncharacterized protein conserved in bacteria gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1079 CH60_108 CH60_108 ppiA ppiA 133413 133982 + peptidyl-prolyl cis-trans isomerase A [O] COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_108 CH60_1080 CH60_1080 CH60_1080 1132674 1134326 - mce related family protein [R] COG3008 Paraquat-inducible protein B gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1080 CH60_1081 CH60_1081 CH60_1081 1134313 1135530 - integral membrane%2C PqiA family protein pqiA_fam: integral membrane%2C PqiA family protein~[S] COG2995 Uncharacterized paraquat-inducible protein A gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1081 CH60_1082 CH60_1082 ccmA ccmA 1135728 1137641 - heme ABC exporter%2C ATP-binding protein CcmA ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1082 CH60_1083 CH60_1083 CH60_1083 1137647 1139767 - THUMP domain protein [R] COG1092 Predicted SAM-dependent methyltransferases gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1083 CH60_1084 CH60_1084 CH60_1084 1139870 1140979 + 2Fe-2S iron-sulfur cluster binding domain protein [R] COG3217 Uncharacterized Fe-S protein gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1084 CH60_1085 CH60_1085 CH60_1085 1141005 1141556 - hypothetical protein conserved hypothetical protein gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1085 CH60_1086 CH60_1086 pyrD pyrD 1141739 1142749 - dihydroorotate dehydrogenase pyrD_sub2: dihydroorotate dehydrogenase~[F] COG0167 Dihydroorotate dehydrogenase gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1086 CH60_1087 CH60_1087 pepN pepN 1143358 1145973 - aminopeptidase N pepN_proteo: aminopeptidase N~[E] COG0308 Aminopeptidase N gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1087 CH60_1088 CH60_1088 pncB pncB 1146707 1147912 + nicotinate phosphoribosyltransferase NAPRTase: nicotinate phosphoribosyltransferase~[H] COG1488 Nicotinic acid phosphoribosyltransferase gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1088 CH60_1089 CH60_1089 asnS asnS 1148426 1149826 + asparagine--tRNA ligase asnS: asparagine--tRNA ligase~[J] COG0017 Aspartyl/asparaginyl-tRNA synthetases gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1089 CH60_109 CH60_109 CH60_109 134374 135849 + ftsK/SpoIIIE family protein [R] COG0433 Predicted ATPase gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_109 CH60_1090 CH60_1090 CH60_1090 1150127 1151212 + gram-negative porin family protein [M] COG3203 Outer membrane protein (porin) gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1090 CH60_1091 CH60_1091 aspC aspC 1151469 1152659 + aspartate aminotransferase [E] COG1448 Aspartate/tyrosine/aromatic aminotransferase gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1091 CH60_1092 CH60_1092 CH60_1092 1153083 1153730 - beta-lactamase superfamily domain protein [R] COG0491 Zn-dependent hydrolases%2C including glyoxylases gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1092 CH60_1093 CH60_1093 CH60_1093 1153791 1154339 - hypothetical protein conserved hypothetical protein~[S] COG3108 Uncharacterized protein conserved in bacteria gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1093 CH60_1094 CH60_1094 CH60_1094 1154563 1156272 - L%2CD-transpeptidase catalytic domain protein [S] COG2989 Uncharacterized protein conserved in bacteria gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1094 CH60_1095 CH60_1095 CH60_1095 1156703 1157161 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1095 CH60_1096 CH60_1096 CH60_1096 1157377 1161834 - hypothetical protein mukB N-terminal family protein~[D] COG3096 Uncharacterized protein involved in chromosome partitioning gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1096 CH60_1097 CH60_1097 mukE mukE 1161831 1162559 - chromosome partition protein mukE [D] COG3095 Uncharacterized protein involved in chromosome partitioning gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1097 CH60_1098 CH60_1098 CH60_1098 1162540 1163862 - kicB killing factor family protein [D] COG3006 Uncharacterized protein involved in chromosome partitioning gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1098 CH60_1099 CH60_1099 CH60_1099 1163859 1164644 - methyltransferase small domain protein [QR] COG0500 SAM-dependent methyltransferases gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1099 CH60_11 CH60_11 CH60_11 12894 14390 + phosphate transporter family protein [P] COG0306 Phosphate/sulphate permeases gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_11 CH60_110 CH60_110 CH60_110 136092 136667 + glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein trpG_papA: glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein~[EH] COG0512 Anthranilate/para-aminobenzoate synthases component II gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_110 CH60_1100 CH60_1100 CH60_1100 1165417 1166310 - fructosamine kinase family protein gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1100 CH60_1101 CH60_1101 kdsB kdsB 1166673 1167425 - 3-deoxy-D-manno-octulosonate cytidylyltransferase kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase~[M] COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1101 CH60_1102 CH60_1102 CH60_1102 1167422 1167604 - trm112p-like family protein [S] COG2835 Uncharacterized conserved protein gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1102 CH60_1103 CH60_1103 CH60_1103 1168152 1168361 - 'Cold-shock' DNA-binding domain protein [K] COG1278 Cold shock proteins gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1103 CH60_1104 CH60_1104 CH60_1104 1169080 1170507 + hypothetical protein conserved hypothetical protein~[S] COG5383 Uncharacterized protein conserved in bacteria gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1104 CH60_1105 CH60_1105 lpxK lpxK 1170515 1171501 - tetraacyldisaccharide 4'-kinase lpxK: tetraacyldisaccharide 4'-kinase~[M] COG1663 Tetraacyldisaccharide-1-P 4'-kinase gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1105 CH60_1106 CH60_1106 msbA msbA 1171498 1173246 - lipid A export permease/ATP-binding protein MsbA msbA_lipidA: lipid A export permease/ATP-binding protein MsbA~[V] COG1132 ABC-type multidrug transport system%2C ATPase and permease components gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1106 CH60_1107 CH60_1107 CH60_1107 1173282 1175573 - DNA internalization-related competence protein ComEC/Rec2 comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2~[R] COG0658 Predicted membrane metal-binding protein gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1107 CH60_1108 CH60_1108 ihfB ihfB 1176120 1176404 - integration host factor%2C beta subunit hip: integration host factor%2C beta subunit~[L] COG0776 Bacterial nucleoid DNA-binding protein gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1108 CH60_1109 CH60_1109 CH60_1109 1175834 1176136 + hypothetical protein conserved hypothetical protein gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1109 CH60_111 CH60_111 astC astC 136800 138017 + succinylornithine transaminase family protein arg_catab_astC: succinylornithine transaminase family protein~[E] COG4992 Ornithine/acetylornithine aminotransferase gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_111 CH60_1110 CH60_1110 rpsA rpsA 1176465 1178138 - ribosomal protein S1 rpsA: ribosomal protein S1~[J] COG0539 Ribosomal protein S1 gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1110 CH60_1111 CH60_1111 cmk cmk 1178312 1179004 - cytidylate kinase cmk: cytidylate kinase~[F] COG0283 Cytidylate kinase gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1111 CH60_1112 CH60_1112 aroA aroA 1179317 1180603 - 3-phosphoshikimate 1-carboxyvinyltransferase aroA: 3-phosphoshikimate 1-carboxyvinyltransferase~[E] COG0128 5-enolpyruvylshikimate-3-phosphate synthase gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1112 CH60_1113 CH60_1113 serC serC 1180766 1181851 - phosphoserine transaminase serC_1: phosphoserine transaminase~[HE] COG1932 Phosphoserine aminotransferase gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1113 CH60_1114 CH60_1114 CH60_1114 1182218 1184065 - hypothetical protein yadA-like C-terminal region family protein gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1114 CH60_1115 CH60_1115 CH60_1115 1184086 1185180 - coiled stalk of trimeric autotransporter adhesin family protein [UW] COG5295 Autotransporter adhesin gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1115 CH60_1116 CH60_1116 CH60_1116 1185449 1186486 - L-asparaginase%2C type II family protein asnASE_II: L-asparaginase%2C type II family protein~[EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1116 CH60_1117 CH60_1117 CH60_1117 1186635 1188401 + ycaO-type kinase domain protein [S] COG1944 Uncharacterized conserved protein gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1117 CH60_1118 CH60_1118 focA focA 1189097 1189954 + formate transporter FocA formate_focA: formate transporter FocA~[P] COG2116 Formate/nitrite family of transporters gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1118 CH60_1119 CH60_1119 pflB pflB 1190010 1192292 + formate acetyltransferase pyr_form_ly_1: formate acetyltransferase~[C] COG1882 Pyruvate-formate lyase gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1119 CH60_112 CH60_112 CH60_112 138243 140363 - integral membrane%2C YccS/YhfK family protein YCCS_YHJK: integral membrane%2C YccS/YhfK family protein~[S] COG1289 Predicted membrane protein gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_112 CH60_1120 CH60_1120 CH60_1120 1192410 1193084 - glycosyltransferase 25 family protein [M] COG3306 Glycosyltransferase involved in LPS biosynthesis gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1120 CH60_1121 CH60_1121 pflA pflA 1194071 1194805 + pyruvate formate-lyase 1-activating enzyme PFLA: pyruvate formate-lyase 1-activating enzyme~[O] COG1180 Pyruvate-formate lyase-activating enzyme gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1121 CH60_1122 CH60_1122 CH60_1122 1194959 1196107 - sugar (and other) transporter family protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1122 CH60_1123 CH60_1123 serS serS 1196338 1197630 - serine--tRNA ligase serS: serine--tRNA ligase~[J] COG0172 Seryl-tRNA synthetase gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1123 CH60_1124 CH60_1124 CH60_1124 1197872 1199206 - sigma-54 interaction domain protein [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1124 CH60_1125 CH60_1125 CH60_1125 1197782 1197916 + hypothetical protein conserved hypothetical protein gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1125 CH60_1126 CH60_1126 lolA lolA 1199226 1199834 - outer membrane lipocarrier protein LolA lolA: outer membrane lipocarrier protein LolA~[M] COG2834 Outer membrane lipoprotein-sorting protein gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1126 CH60_1127 CH60_1127 CH60_1127 1200027 1203944 - ftsK/SpoIIIE family protein [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1127 CH60_1128 CH60_1128 lrp lrp 1204067 1204561 - leucine-responsive regulatory protein [K] COG1522 Transcriptional regulators gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1128 CH60_1129 CH60_1129 trxB trxB 1205328 1206290 + thioredoxin-disulfide reductase TRX_reduct: thioredoxin-disulfide reductase~[O] COG0492 Thioredoxin reductase gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1129 CH60_113 CH60_113 CH60_113 140449 141081 - bacterial regulatory s%2C crp family protein [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_113 CH60_1130 CH60_1130 cydD cydD 1206749 1208515 + thiol reductant ABC exporter%2C CydD subunit cydD: thiol reductant ABC exporter%2C CydD subunit~[CO] COG4988 ABC-type transport system involved in cytochrome bd biosynthesis%2C ATPase and permease components gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1130 CH60_1131 CH60_1131 cydC cydC 1208518 1210242 + thiol reductant ABC exporter%2C CydC subunit cydC: thiol reductant ABC exporter%2C CydC subunit~[CO] COG4987 ABC-type transport system involved in cytochrome bd biosynthesis%2C fused ATPase and permease components gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1131 CH60_1132 CH60_1132 aat aat 1210461 1211171 + leucyl/phenylalanyl-tRNA--protein transferase aat: leucyl/phenylalanyl-tRNA--protein transferase~[O] COG2360 Leu/Phe-tRNA-protein transferase gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1132 CH60_1133 CH60_1133 infA infA 1211337 1211555 + translation initiation factor IF-1 infA: translation initiation factor IF-1~[J] COG0361 Translation initiation factor 1 (IF-1) gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1133 CH60_1134 CH60_1134 CH60_1134 1211927 1212385 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1134 CH60_1135 CH60_1135 clpA clpA 1212678 1214954 - ATP-dependent Clp protease ATP-binding subunit ClpA clpA: ATP-dependent Clp protease ATP-binding subunit ClpA~[O] COG0542 ATPases with chaperone activity%2C ATP-binding subunit gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1135 CH60_1136 CH60_1136 CH60_1136 1214980 1215300 - ATP-dependent Clp protease adaptor ClpS family protein [S] COG2127 Uncharacterized conserved protein gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1136 CH60_1137 CH60_1137 cspD cspD 1215661 1215924 + cold shock domain protein CspD cspD: cold shock domain protein CspD~[K] COG1278 Cold shock proteins gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1137 CH60_1138 CH60_1138 CH60_1138 1216205 1218154 - ABC transporter family protein [V] COG0577 ABC-type antimicrobial peptide transport system%2C permease component gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1138 CH60_1139 CH60_1139 CH60_1139 1218154 1219266 - efflux transporter%2C RND family%2C MFP subunit RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1139 CH60_114 CH60_114 CH60_114 141417 141824 + osmC-like family protein [O] COG1765 Predicted redox protein%2C regulator of disulfide bond formation gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_114 CH60_1140 CH60_1140 CH60_1140 1219503 1220450 + hypothetical protein conserved hypothetical protein~[S] COG2990 Uncharacterized protein conserved in bacteria gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1140 CH60_1141 CH60_1141 CH60_1141 1220587 1222254 - AAA domain protein [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1141 CH60_1142 CH60_1142 CH60_1142 1222607 1223503 + hypothetical protein conserved hypothetical protein~[S] COG2431 Predicted membrane protein gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1142 CH60_1143 CH60_1143 hcp hcp 1223705 1225357 + hydroxylamine reductase hybrid_clust: hydroxylamine reductase~[C] COG1151 6Fe-6S prismane cluster-containing protein gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1143 CH60_1144 CH60_1144 CH60_1144 1225471 1226493 + 2Fe-2S iron-sulfur cluster binding domain protein [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1144 CH60_1145 CH60_1145 CH60_1145 1226637 1228358 + thiamine pyrophosphate enzyme%2C central domain protein [EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase%2C pyruvate dehydrogenase (cytochrome)%2C glyoxylate carboligase%2C phosphonopyruvate decarboxylase] gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1145 CH60_1146 CH60_1146 CH60_1146 1228707 1229726 + beta-eliminating lyase family protein [E] COG2008 Threonine aldolase gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1146 CH60_1147 CH60_1147 CH60_1147 1229723 1231213 + 3-beta hydroxysteroid dehydrogenase/isomerase family protein [MG] COG0702 Predicted nucleoside-diphosphate-sugar epimerases gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1147 CH60_1148 CH60_1148 CH60_1148 1231313 1232320 + 3-beta hydroxysteroid dehydrogenase/isomerase family protein [MG] COG0451 Nucleoside-diphosphate-sugar epimerases gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1148 CH60_1149 CH60_1149 CH60_1149 1232417 1232992 + putative lipoprotein YbjP gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1149 CH60_115 CH60_115 CH60_115 141896 142327 + hypothetical protein conserved hypothetical protein gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_115 CH60_1150 CH60_1150 CH60_1150 1233162 1233722 + putative chorismate mutase CM_mono2: putative chorismate mutase~[E] COG1605 Chorismate mutase gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1150 CH60_1151 CH60_1151 artP artP 1234017 1234745 + arginine transport ATP-binding protein ArtP [E] COG4161 ABC-type arginine transport system%2C ATPase component gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1151 CH60_1152 CH60_1152 CH60_1152 1234766 1235497 + lysine-arginine-ornithine-binding periplasmic family protein 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein~[ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1152 CH60_1153 CH60_1153 CH60_1153 1235509 1236225 + amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG4215 ABC-type arginine transport system%2C permease component gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1153 CH60_1154 CH60_1154 CH60_1154 1236225 1236893 + amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG4160 ABC-type arginine/histidine transport system%2C permease component gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1154 CH60_1155 CH60_1155 CH60_1155 1237083 1237928 - eamA-like transporter family protein [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1155 CH60_1156 CH60_1156 CH60_1156 1237925 1239295 - hypothetical protein conserved hypothetical protein~[S] COG4408 Uncharacterized protein conserved in bacteria gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1156 CH60_1157 CH60_1157 CH60_1157 1239288 1240085 - nicotianamine synthase family protein [QR] COG0500 SAM-dependent methyltransferases gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1157 CH60_1158 CH60_1158 CH60_1158 1240073 1240858 - ABC transporter family protein [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems%2C ATPase components gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1158 CH60_1159 CH60_1159 CH60_1159 1240855 1241721 - ABC 3 transport family protein [P] COG0609 ABC-type Fe3+-siderophore transport system%2C permease component gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1159 CH60_116 CH60_116 CH60_116 142505 143374 - phosphoribulokinase / Uridine kinase family protein [C] COG3954 Phosphoribulokinase gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_116 CH60_1160 CH60_1160 CH60_1160 1241675 1241911 - putative iron(III) dicitrate transport system permease protein FecD gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1160 CH60_1161 CH60_1161 CH60_1161 1241911 1243002 - periplasmic binding family protein [P] COG0614 ABC-type Fe3+-hydroxamate transport system%2C periplasmic component gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1161 CH60_1162 CH60_1162 CH60_1162 1243414 1244340 - SPFH domain / Band 7 family protein [O] COG0330 Membrane protease subunits%2C stomatin/prohibitin homologs gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1162 CH60_1163 CH60_1163 CH60_1163 1244681 1244911 - hypothetical protein conserved hypothetical protein gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1163 CH60_1164 CH60_1164 CH60_1164 1245159 1245890 + lysine-arginine-ornithine-binding periplasmic family protein 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein~[ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1164 CH60_1165 CH60_1165 rumA rumA 1246017 1247147 - 23S rRNA (uracil-5-)-methyltransferase RumA rumA: 23S rRNA (uracil-5-)-methyltransferase RumA~[J] COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1165 CH60_1166 CH60_1166 ybjO ybjO 1247231 1247695 - inner membrane protein ybjO gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1166 CH60_1167 CH60_1167 CH60_1167 1247820 1248665 - binding--dependent transport system inner membrane component family protein [E] COG1177 ABC-type spermidine/putrescine transport system%2C permease component II gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1167 CH60_1168 CH60_1168 CH60_1168 1248662 1249627 - binding--dependent transport system inner membrane component family protein [E] COG1176 ABC-type spermidine/putrescine transport system%2C permease component I gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1168 CH60_1169 CH60_1169 CH60_1169 1249652 1250785 - polyamine ABC transporter%2C ATP-binding family protein potA: polyamine ABC transporter%2C ATP-binding family protein~[E] COG3842 ABC-type spermidine/putrescine transport systems%2C ATPase components gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1169 CH60_117 CH60_117 CH60_117 143523 143759 - hypothetical protein conserved hypothetical protein~[S] COG3089 Uncharacterized protein conserved in bacteria gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_117 CH60_1170 CH60_1170 potF potF 1250956 1252065 - putrescine-binding periplasmic protein [E] COG0687 Spermidine/putrescine-binding periplasmic protein gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1170 CH60_1171 CH60_1171 CH60_1171 1252583 1253068 - bacterial sensory transduction regulator family protein gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1171 CH60_1172 CH60_1172 CH60_1172 1253210 1253524 - hypothetical protein conserved hypothetical protein gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1172 CH60_1173 CH60_1173 grxA grxA 1253987 1254250 + glutaredoxin%2C GrxA family GRXA: glutaredoxin%2C GrxA family~[O] COG0695 Glutaredoxin and related proteins gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1173 CH60_1174 CH60_1174 CH60_1174 1254660 1256348 + AspT/YidE/YbjL antiporter duplication domain protein yidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain protein~[R] COG2985 Predicted permease gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1174 CH60_1175 CH60_1175 CH60_1175 1256726 1257496 + PAP2 superfamily protein [R] COG3907 PAP2 (acid phosphatase) superfamily protein gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1175 CH60_1176 CH60_1176 CH60_1176 1257496 1258101 + PAP2 superfamily protein [I] COG0671 Membrane-associated phospholipid phosphatase gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1176 CH60_1177 CH60_1177 deoC deoC 1258359 1259030 + deoxyribose-phosphate aldolase deoC: deoxyribose-phosphate aldolase~[F] COG0274 Deoxyribose-phosphate aldolase gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1177 CH60_1178 CH60_1178 CH60_1178 1259260 1260024 + deoR-like helix-turn-helix domain protein [KG] COG1349 Transcriptional regulators of sugar metabolism gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1178 CH60_1179 CH60_1179 stp stp 1261123 1262424 + serine transporter family protein stp: serine transporter family protein~[E] COG0814 Amino acid permeases gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1179 CH60_118 CH60_118 CH60_118 143756 144736 - alpha/beta hydrolase family protein [R] COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_118 CH60_1180 CH60_1180 CH60_1180 1262865 1264070 - D-alanyl-D-alanine carboxypeptidase family protein [M] COG1686 D-alanyl-D-alanine carboxypeptidase gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1180 CH60_1181 CH60_1181 CH60_1181 1264405 1265076 - binding--dependent transport system inner membrane component family protein [P] COG2011 ABC-type metal ion transport system%2C permease component gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1181 CH60_1182 CH60_1182 CH60_1182 1265073 1266059 - ABC transporter family protein [P] COG1135 ABC-type metal ion transport system%2C ATPase component gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1182 CH60_1183 CH60_1183 CH60_1183 1266056 1266880 - NLPA lipofamily protein [P] COG1464 ABC-type metal ion transport system%2C periplasmic component/surface antigen gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1183 CH60_1184 CH60_1184 CH60_1184 1267108 1268175 - 2OG-Fe(II) oxygenase superfamily protein [R] COG3491 Isopenicillin N synthase and related dioxygenases gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1184 CH60_1185 CH60_1185 CH60_1185 1268662 1269312 + HAD phosphoserine phosphatase-like hydrolase%2C IB family protein HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase%2C IB family protein~[E] COG0560 Phosphoserine phosphatase gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1185 CH60_1186 CH60_1186 CH60_1186 1269466 1270086 + hypothetical protein glutathione S-transferase%2C N-terminal domain protein~[O] COG0625 Glutathione S-transferase gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1186 CH60_1187 CH60_1187 CH60_1187 1270356 1272353 - tonB dependent receptor family protein [P] COG4771 Outer membrane receptor for ferrienterochelin and colicins gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1187 CH60_1188 CH60_1188 CH60_1188 1272613 1273401 - ABC transporter family protein [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems%2C ATPase components gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1188 CH60_1189 CH60_1189 CH60_1189 1273398 1274480 - fecCD transport family protein [P] COG0609 ABC-type Fe3+-siderophore transport system%2C permease component gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1189 CH60_119 CH60_119 CH60_119 144838 145440 + lysE type translocator family protein [E] COG1280 Putative threonine efflux protein gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_119 CH60_1190 CH60_1190 CH60_1190 1274675 1275820 - periplasmic binding family protein [P] COG0614 ABC-type Fe3+-hydroxamate transport system%2C periplasmic component gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1190 CH60_1191 CH60_1191 CH60_1191 1276106 1277617 - amino acid permease family protein [E] COG0833 Amino acid transporters gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1191 CH60_1192 CH60_1192 CH60_1192 1277727 1277873 - hypothetical protein conserved hypothetical protein gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1192 CH60_1193 CH60_1193 CH60_1193 1277875 1278747 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1193 CH60_1194 CH60_1194 CH60_1194 1279405 1280493 + hypothetical protein conserved hypothetical family protein~[S] COG2855 Predicted membrane protein gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1194 CH60_1195 CH60_1195 CH60_1195 1280657 1280818 + putative endonuclease IV [L] COG0648 Endonuclease IV gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1195 CH60_1196 CH60_1196 CH60_1196 1280900 1281622 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1196 CH60_1197 CH60_1197 CH60_1197 1281642 1281920 + putative transposase Orf A%2C insertion element IS100 [L] COG4584 Transposase and inactivated derivatives gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1197 CH60_1198 CH60_1198 CH60_1198 1281920 1282699 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1198 CH60_1199 CH60_1199 CH60_1199 1283044 1286157 - chondroitin ABC endolyase 1 gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1199 CH60_12 CH60_12 CH60_12 14656 15114 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_12 CH60_120 CH60_120 tauA tauA 145643 146704 + taurine ABC transporter%2C periplasmic binding protein taurine_ABC_bnd: taurine ABC transporter%2C periplasmic binding protein~[P] COG4521 ABC-type taurine transport system%2C periplasmic component gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_120 CH60_1200 CH60_1200 CH60_1200 1286227 1288413 - outer membrane autotransporter barrel domain protein autotrans_barl: outer membrane autotransporter barrel domain protein~[S] COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1200 CH60_1201 CH60_1201 CH60_1201 1288528 1289478 - hypothetical protein conserved hypothetical protein gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1201 CH60_1202 CH60_1202 CH60_1202 1290081 1290269 - putative hyaluronate lyase gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1202 CH60_1203 CH60_1203 CH60_1203 1290765 1291520 + Tat (twin-arginine translocation) pathway signal sequence domain protein TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein~[P] COG0288 Carbonic anhydrase gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1203 CH60_1204 CH60_1204 CH60_1204 1292263 1292679 + hypothetical protein conserved hypothetical protein gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1204 CH60_1205 CH60_1205 CH60_1205 1292747 1293250 + type IV pilus biogenesis family protein gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1205 CH60_1206 CH60_1206 gspD gspD 1293331 1295253 + type II secretion system protein D type_II_gspD: type II secretion system protein D~[NU] COG1450 Type II secretory pathway%2C component PulD gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1206 CH60_1207 CH60_1207 gspE gspE 1295250 1296761 + type II secretion system protein E type_II_gspE: type II secretion system protein E~[NU] COG2804 Type II secretory pathway%2C ATPase PulE/Tfp pilus assembly pathway%2C ATPase PilB gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1207 CH60_1208 CH60_1208 CH60_1208 1296748 1297950 + type II secretion system (T2SS)%2C F family protein [NU] COG1459 Type II secretory pathway%2C component PulF gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1208 CH60_1209 CH60_1209 gspG gspG 1297970 1298407 + type II secretion system protein G typeII_sec_gspG: type II secretion system protein G~[NU] COG2165 Type II secretory pathway%2C pseudopilin PulG gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1209 CH60_121 CH60_121 CH60_121 146713 147480 + ABC transporter family protein [P] COG4525 ABC-type taurine transport system%2C ATPase component gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_121 CH60_1210 CH60_1210 CH60_1210 1298412 1298954 + hypothetical protein IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein~[NU] COG2165 Type II secretory pathway%2C pseudopilin PulG gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1210 CH60_1211 CH60_1211 CH60_1211 1299046 1299336 + type II secretion system (T2SS)%2C I family protein [NU] COG2165 Type II secretory pathway%2C pseudopilin PulG gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1211 CH60_1212 CH60_1212 gspJ gspJ 1299329 1299925 + type II secretion system protein J gspJ: type II secretion system protein J~[U] COG4795 Type II secretory pathway%2C component PulJ gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1212 CH60_1213 CH60_1213 CH60_1213 1299934 1300890 + type II secretion system (T2SS)%2C K family protein [U] COG3156 Type II secretory pathway%2C component PulK gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1213 CH60_1214 CH60_1214 gspL gspL 1300874 1302064 + type II secretion system protein L typeII_sec_gspL: type II secretion system protein L~[U] COG3297 Type II secretory pathway%2C component PulL gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1214 CH60_1215 CH60_1215 CH60_1215 1302073 1302522 + putative membrane protein gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1215 CH60_1216 CH60_1216 CH60_1216 1303374 1303739 - bacterial chaperone lipo family protein gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1216 CH60_1217 CH60_1217 CH60_1217 1302551 1303390 + type IV leader peptidase family protein [NOU] COG1989 Type II secretory pathway%2C prepilin signal peptidase PulO and related peptidases gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1217 CH60_1218 CH60_1218 CH60_1218 1304023 1304739 + hypothetical protein transcriptional regulatory%2C C terminal family protein~[K] COG3710 DNA-binding winged-HTH domains gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1218 CH60_1219 CH60_1219 CH60_1219 1304736 1305137 + hypothetical protein conserved hypothetical protein gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1219 CH60_122 CH60_122 CH60_122 147477 148331 + binding--dependent transport system inner membrane component family protein [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system%2C permease component gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_122 CH60_1220 CH60_1220 CH60_1220 1306969 1307604 - DSBA-like thioredoxin domain protein [O] COG3531 Predicted protein-disulfide isomerase gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1220 CH60_1221 CH60_1221 CH60_1221 1305304 1306983 + hypothetical protein conserved hypothetical protein~[NT] COG0840 Methyl-accepting chemotaxis protein gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1221 CH60_1222 CH60_1222 CH60_1222 1307717 1308604 - metallo-beta-lactamase superfamily protein [R] COG0491 Zn-dependent hydrolases%2C including glyoxylases gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1222 CH60_1223 CH60_1223 CH60_1223 1308711 1309619 + bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1223 CH60_1224 CH60_1224 CH60_1224 1311145 1312086 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1224 CH60_1225 CH60_1225 CH60_1225 1309988 1311148 + sugar (and other) transporter family protein [G] COG2814 Arabinose efflux permease gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1225 CH60_1226 CH60_1226 CH60_1226 1313560 1314582 - bacterial regulatory s%2C lacI family protein [K] COG1609 Transcriptional regulators gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1226 CH60_1227 CH60_1227 lysA lysA 1312301 1313563 + diaminopimelate decarboxylase lysA: diaminopimelate decarboxylase~[E] COG0019 Diaminopimelate decarboxylase gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1227 CH60_1228 CH60_1228 CH60_1228 1314892 1317153 + molybdopterin oxidoreductase family protein [C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1228 CH60_1229 CH60_1229 CH60_1229 1317602 1319758 + acyltransferase family protein [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1229 CH60_123 CH60_123 tauD tauD 148328 149176 + alpha-ketoglutarate-dependent taurine dioxygenase [Q] COG2175 Probable taurine catabolism dioxygenase gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_123 CH60_1230 CH60_1230 CH60_1230 1319755 1320975 + major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1230 CH60_1231 CH60_1231 CH60_1231 1321004 1321168 - hypothetical protein conserved hypothetical protein~[S] COG3122 Uncharacterized protein conserved in bacteria gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1231 CH60_1232 CH60_1232 CH60_1232 1321316 1321567 + hypothetical protein conserved hypothetical protein gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1232 CH60_1233 CH60_1233 CH60_1233 1321944 1322984 - aldo/keto reductase family protein [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1233 CH60_1234 CH60_1234 mutH mutH 1323355 1324041 - DNA mismatch repair endonuclease MutH mutH_TIGR: DNA mismatch repair endonuclease MutH~[L] COG3066 DNA mismatch repair protein gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1234 CH60_1235 CH60_1235 rppH rppH 1324731 1325258 + RNA pyrophosphohydrolase [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1235 CH60_1236 CH60_1236 ptsP ptsP 1325277 1327517 + phosphoenolpyruvate-protein phosphotransferase PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase~[T] COG3605 Signal transduction protein containing GAF and PtsI domains gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1236 CH60_1237 CH60_1237 lgt lgt 1327768 1328640 + prolipoprotein diacylglyceryl transferase lgt: prolipoprotein diacylglyceryl transferase~[M] COG0682 Prolipoprotein diacylglyceryltransferase gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1237 CH60_1238 CH60_1238 thyA thyA 1328647 1329441 + thymidylate synthase thym_sym: thymidylate synthase~[F] COG0207 Thymidylate synthase gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1238 CH60_1239 CH60_1239 CH60_1239 1329461 1329601 + putative membrane protein gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1239 CH60_124 CH60_124 CH60_124 149189 149950 - glycosyltransferase 9 family protein [M] COG0859 ADP-heptose:LPS heptosyltransferase gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_124 CH60_1240 CH60_1240 CH60_1240 1329677 1330246 + hypothetical protein IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein~[NU] COG2165 Type II secretory pathway%2C pseudopilin PulG gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1240 CH60_1241 CH60_1241 CH60_1241 1330237 1330845 + hypothetical protein IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein~[U] COG4795 Type II secretory pathway%2C component PulJ gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1241 CH60_1242 CH60_1242 CH60_1242 1330842 1331312 + hypothetical protein conserved hypothetical protein gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1242 CH60_1243 CH60_1243 CH60_1243 1331300 1331710 + hypothetical protein conserved hypothetical protein~[NU] COG4967 Tfp pilus assembly protein PilV gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1243 CH60_1244 CH60_1244 recC recC 1331845 1335216 + exodeoxyribonuclease V%2C gamma subunit recC: exodeoxyribonuclease V%2C gamma subunit~[L] COG1330 Exonuclease V gamma subunit gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1244 CH60_1245 CH60_1245 CH60_1245 1335298 1338186 + insulinase family protein [O] COG1025 Secreted/periplasmic Zn-dependent peptidases%2C insulinase-like gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1245 CH60_1246 CH60_1246 recB recB 1338183 1341845 + exodeoxyribonuclease V%2C beta subunit recB: exodeoxyribonuclease V%2C beta subunit~[L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1246 CH60_1247 CH60_1247 recD recD 1341842 1343800 + exodeoxyribonuclease V%2C alpha subunit recD: exodeoxyribonuclease V%2C alpha subunit~[L] COG0507 ATP-dependent exoDNAse (exonuclease V)%2C alpha subunit - helicase superfamily I member gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1247 CH60_1248 CH60_1248 argA argA 1343942 1345267 - amino-acid N-acetyltransferase N-Ac-Glu-synth: amino-acid N-acetyltransferase~[E] COG0548 Acetylglutamate kinase gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1248 CH60_1249 CH60_1249 CH60_1249 1345503 1346753 + N-acetylmuramoyl-L-alanine amidase family protein [M] COG0860 N-acetylmuramoyl-L-alanine amidase gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1249 CH60_125 CH60_125 CH60_125 150051 150155 - putative sugar transferase [M] COG0859 ADP-heptose:LPS heptosyltransferase gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_125 CH60_1250 CH60_1250 CH60_1250 1346983 1347059 - tRNA-Met tRNA gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1250 CH60_1251 CH60_1251 CH60_1251 1347183 1347259 - tRNA-Met tRNA gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1251 CH60_1252 CH60_1252 CH60_1252 1347475 1348647 + mltA specific insert domain protein [M] COG2821 Membrane-bound lytic murein transglycosylase gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1252 CH60_1253 CH60_1253 CH60_1253 1348790 1349617 + thiF family protein [H] COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1253 CH60_1254 CH60_1254 csdE csdE 1349653 1350093 - cysteine desulfurase%2C sulfur acceptor subunit CsdE feS_syn_CsdE: cysteine desulfurase%2C sulfur acceptor subunit CsdE~[R] COG2166 SufE protein probably involved in Fe-S center assembly gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1254 CH60_1255 CH60_1255 csdA csdA 1350231 1351436 - cysteine desulfurase%2C catalytic subunit CsdA feS_syn_CsdA: cysteine desulfurase%2C catalytic subunit CsdA~[E] COG0520 Selenocysteine lyase gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1255 CH60_1256 CH60_1256 CH60_1256 1351513 1351632 + hypothetical protein conserved hypothetical protein gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1256 CH60_1257 CH60_1257 gcvA gcvA 1352096 1353013 + glycine cleavage system transcriptional activator [K] COG0583 Transcriptional regulator gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1257 CH60_1258 CH60_1258 CH60_1258 1353179 1353574 + hypothetical protein conserved hypothetical protein~[S] COG2363 Uncharacterized small membrane protein gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1258 CH60_1259 CH60_1259 CH60_1259 1353567 1354673 + ftsJ-like methyltransferase family protein [R] COG2933 Predicted SAM-dependent methyltransferase gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1259 CH60_126 CH60_126 CH60_126 150248 151237 - glycosyltransferase like 2 family protein [M] COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_126 CH60_1260 CH60_1260 CH60_1260 1354924 1355679 - hypothetical protein 5'-3' exonuclease%2C C-terminal SAM fold family protein~[L] COG0258 5'-3' exonuclease (including N-terminal domain of PolI) gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1260 CH60_1261 CH60_1261 CH60_1261 1355939 1357303 - hypothetical protein conserved hypothetical protein~[R] COG1611 Predicted Rossmann fold nucleotide-binding protein gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1261 CH60_1262 CH60_1262 queF queF 1357456 1358301 - queuine synthase queF: queuine synthase~[R] COG0780 Enzyme related to GTP cyclohydrolase I gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1262 CH60_1263 CH60_1263 CH60_1263 1358433 1358984 + syd family protein gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1263 CH60_1264 CH60_1264 CH60_1264 1359674 1360132 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1264 CH60_1265 CH60_1265 CH60_1265 1360386 1360718 + tRNA pseudouridine synthase C family protein [S] COG3098 Uncharacterized protein conserved in bacteria gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1265 CH60_1266 CH60_1266 CH60_1266 1360718 1361491 + RNA pseudouridylate synthase family protein [J] COG0564 Pseudouridylate synthases%2C 23S RNA-specific gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1266 CH60_1267 CH60_1267 CH60_1267 1361519 1361968 + flavodoxin family protein [C] COG0716 Flavodoxins gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1267 CH60_1268 CH60_1268 CH60_1268 1362058 1362447 - hypothetical protein conserved hypothetical protein gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1268 CH60_1269 CH60_1269 dapD dapD 1362571 1363395 - 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase dapD: 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase~[E] COG2171 Tetrahydrodipicolinate N-succinyltransferase gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1269 CH60_127 CH60_127 CH60_127 151372 153294 - miro-like family protein [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_127 CH60_1270 CH60_1270 glnD glnD 1363570 1366251 - protein-P-II uridylyltransferase UTase_glnD: protein-P-II uridylyltransferase~[O] COG2844 UTP:GlnB (protein PII) uridylyltransferase gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1270 CH60_1271 CH60_1271 map map 1366311 1367102 - methionine aminopeptidase%2C type I met_pdase_I: methionine aminopeptidase%2C type I~[J] COG0024 Methionine aminopeptidase gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1271 CH60_1272 CH60_1272 rpsB rpsB 1367537 1368262 + ribosomal protein S2 rpsB_bact: ribosomal protein S2~[J] COG0052 Ribosomal protein S2 gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1272 CH60_1273 CH60_1273 tsf tsf 1368390 1369247 + translation elongation factor Ts tsf: translation elongation factor Ts~[J] COG0264 Translation elongation factor Ts gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1273 CH60_1274 CH60_1274 pyrH pyrH 1369456 1370181 + UMP kinase pyrH_bact: UMP kinase~[F] COG0528 Uridylate kinase gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1274 CH60_1275 CH60_1275 frr frr 1370317 1370874 + ribosome recycling factor frr: ribosome recycling factor~[J] COG0233 Ribosome recycling factor gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1275 CH60_1276 CH60_1276 dxr dxr 1371088 1372284 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase~[I] COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1276 CH60_1277 CH60_1277 uppS uppS 1372508 1373266 + di-trans%2Cpoly-cis-decaprenylcistransferase uppS: di-trans%2Cpoly-cis-decaprenylcistransferase~[I] COG0020 Undecaprenyl pyrophosphate synthase gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1277 CH60_1278 CH60_1278 CH60_1278 1373276 1374124 + cytidylyltransferase family protein [I] COG0575 CDP-diglyceride synthetase gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1278 CH60_1279 CH60_1279 rseP rseP 1374153 1375508 + RIP metalloprotease RseP [M] COG0750 Predicted membrane-associated Zn-dependent proteases 1 gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1279 CH60_128 CH60_128 CH60_128 153545 154093 + NADPH-dependent FMN reductase family protein [R] COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_128 CH60_1280 CH60_1280 yaeT yaeT 1375545 1377932 + outer membrane assembly complex%2C YaeT protein OM_YaeT: outer membrane assembly complex%2C YaeT protein~[M] COG4775 Outer membrane protein/protective antigen OMA87 gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1280 CH60_1281 CH60_1281 CH60_1281 1378090 1378587 + outer membrane family protein [M] COG2825 Outer membrane protein gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1281 CH60_1282 CH60_1282 lpxD lpxD 1378591 1379613 + UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD~[M] COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1282 CH60_1283 CH60_1283 fabZ fabZ 1379771 1380301 + beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ~[I] COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1283 CH60_1284 CH60_1284 lpxA lpxA 1380305 1381093 + acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase~[M] COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1284 CH60_1285 CH60_1285 lpxB lpxB 1381097 1382281 + lipid-A-disaccharide synthase lpxB: lipid-A-disaccharide synthase~[M] COG0763 Lipid A disaccharide synthetase gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1285 CH60_1286 CH60_1286 rnhB rnhB 1382278 1382874 + ribonuclease HII [L] COG0164 Ribonuclease HII gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1286 CH60_1287 CH60_1287 dnaE dnaE 1383037 1386519 + DNA polymerase III%2C alpha subunit polc: DNA polymerase III%2C alpha subunit~[L] COG0587 DNA polymerase III%2C alpha subunit gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1287 CH60_1288 CH60_1288 accA accA 1386532 1387491 + acetyl-CoA carboxylase%2C carboxyl transferase%2C alpha subunit accA: acetyl-CoA carboxylase%2C carboxyl transferase%2C alpha subunit~[I] COG0825 Acetyl-CoA carboxylase alpha subunit gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1288 CH60_1289 CH60_1289 CH60_1289 1387675 1388073 + glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein [E] COG0346 Lactoylglutathione lyase and related lyases gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1289 CH60_129 CH60_129 CH60_129 154097 155905 + transporter%2C monovalent cation:proton antiporter-2 family protein 2a37: transporter%2C monovalent cation:proton antiporter-2 family protein~[P] COG0475 Kef-type K+ transport systems%2C membrane components gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_129 CH60_1290 CH60_1290 tilS tilS 1388075 1389457 + tRNA(Ile)-lysidine synthetase lysidine_TilS_N: tRNA(Ile)-lysidine synthetase~[D] COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1290 CH60_1291 CH60_1291 CH60_1291 1389694 1390011 + cytochrome c family protein [C] COG2863 Cytochrome c553 gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1291 CH60_1292 CH60_1292 rof rof 1390276 1390536 - protein rof [K] COG4568 Transcriptional antiterminator gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1292 CH60_1293 CH60_1293 CH60_1293 1390523 1390723 - hypothetical protein conserved hypothetical protein gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1293 CH60_1294 CH60_1294 CH60_1294 1390965 1391513 + yaeQ family protein [S] COG4681 Uncharacterized protein conserved in bacteria gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1294 CH60_1295 CH60_1295 CH60_1295 1391516 1391932 + RF-1 domain protein [J] COG1186 Protein chain release factor B gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1295 CH60_1296 CH60_1296 CH60_1296 1392017 1392700 + hypothetical protein nlpE N-terminal domain protein~[MP] COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1296 CH60_1297 CH60_1297 proS proS 1392834 1394552 - proline--tRNA ligase proS_fam_II: proline--tRNA ligase~[J] COG0442 Prolyl-tRNA synthetase gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1297 CH60_1298 CH60_1298 tsaA tsaA 1394656 1395363 - tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA~[S] COG1720 Uncharacterized conserved protein gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1298 CH60_1299 CH60_1299 CH60_1299 1395360 1395767 - putative protein rcsF gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1299 CH60_13 CH60_13 uspB uspB 15247 15582 - universal stress protein B gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_13 CH60_130 CH60_130 CH60_130 155921 156142 + hypothetical protein conserved hypothetical protein~[R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_130 CH60_1300 CH60_1300 metQ metQ 1395885 1396700 - D-methionine-binding lipoprotein metQ [P] COG1464 ABC-type metal ion transport system%2C periplasmic component/surface antigen gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1300 CH60_1301 CH60_1301 metI metI 1396764 1397417 - D-methionine transport system permease protein metI [P] COG2011 ABC-type metal ion transport system%2C permease component gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1301 CH60_1302 CH60_1302 metN metN 1397410 1398441 - D-methionine ABC transporter%2C ATP-binding protein ABC_MetN: D-methionine ABC transporter%2C ATP-binding protein~[P] COG1135 ABC-type metal ion transport system%2C ATPase component gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1302 CH60_1303 CH60_1303 gmhB gmhB 1398628 1399194 + D%2CD-heptose 1%2C7-bisphosphate phosphatase [E] COG0241 Histidinol phosphatase and related phosphatases gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1303 CH60_1304 CH60_1304 CH60_1304 1399643 1401170 + 16S ribosomal RNA rRNA gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1304 CH60_1305 CH60_1305 CH60_1305 1401278 1401354 + tRNA-Ile tRNA gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1305 CH60_1306 CH60_1306 CH60_1306 1401406 1401481 + tRNA-Ala tRNA gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1306 CH60_1307 CH60_1307 CH60_1307 1401702 1404600 + 23S ribosomal RNA rRNA gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1307 CH60_1308 CH60_1308 CH60_1308 1404712 1404826 + 5S ribosomal RNA rRNA gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1308 CH60_1309 CH60_1309 CH60_1309 1404951 1405027 + tRNA-Asp tRNA gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1309 CH60_131 CH60_131 slyD slyD 156237 156824 + FKBP-type peptidyl-prolyl cis-trans isomerase slyD [O] COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_131 CH60_1310 CH60_1310 CH60_1310 1405386 1406189 + aldo/keto reductase family protein [R] COG0656 Aldo/keto reductases%2C related to diketogulonate reductase gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1310 CH60_1311 CH60_1311 CH60_1311 1406314 1406688 + hypothetical protein conserved hypothetical protein gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1311 CH60_1312 CH60_1312 CH60_1312 1407049 1407831 + endonuclease/Exonuclease/phosphatase family protein [S] COG3021 Uncharacterized protein conserved in bacteria gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1312 CH60_1313 CH60_1313 CH60_1313 1407874 1409262 - lysM domain protein [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1313 CH60_1314 CH60_1314 gloB gloB 1409334 1410089 - hydroxyacylglutathione hydrolase GSH_gloB: hydroxyacylglutathione hydrolase~[R] COG0491 Zn-dependent hydrolases%2C including glyoxylases gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1314 CH60_1315 CH60_1315 CH60_1315 1410134 1410853 + methyltransferase domain protein [QR] COG0500 SAM-dependent methyltransferases gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1315 CH60_1316 CH60_1316 CH60_1316 1410908 1411372 - RNase H family protein [L] COG0328 Ribonuclease HI gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1316 CH60_1317 CH60_1317 dnaQ dnaQ 1411442 1412206 + DNA polymerase III%2C epsilon subunit dnaQ_proteo: DNA polymerase III%2C epsilon subunit~[L] COG0847 DNA polymerase III%2C epsilon subunit and related 3'-5' exonucleases gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1317 CH60_1318 CH60_1318 CH60_1318 1412319 1412395 + tRNA-Asp tRNA gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1318 CH60_1319 CH60_1319 CH60_1319 1412452 1413936 - permease for cytosine/purine%2C uracil%2C thiamine%2C allantoin family protein [FH] COG1953 Cytosine/uracil/thiamine/allantoin permeases gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1319 CH60_132 CH60_132 CH60_132 157045 157263 - slyX family protein [S] COG2900 Uncharacterized protein conserved in bacteria gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_132 CH60_1320 CH60_1320 CH60_1320 1414275 1414508 + urate catabolism domain protein [G] COG0726 Predicted xylanase/chitin deacetylase gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1320 CH60_1321 CH60_1321 CH60_1321 1414559 1414975 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1321 CH60_1322 CH60_1322 CH60_1322 1414978 1415337 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1322 CH60_1323 CH60_1323 CH60_1323 1415405 1416359 - putative transposase Orf A%2C insertion element IS100%3Bhelix-turn-helix family protein pseudogene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1323 CH60_1325 CH60_1325 CH60_1325 1416416 1417183 + polysaccharide deacetylase family protein [G] COG0726 Predicted xylanase/chitin deacetylase gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1325 CH60_1326 CH60_1326 CH60_1326 1417413 1418417 - substrate binding domain of ABC-type glycine betaine transport system family protein [E] COG2113 ABC-type proline/glycine betaine transport systems%2C periplasmic components gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1326 CH60_1327 CH60_1327 CH60_1327 1418465 1419631 - binding--dependent transport system inner membrane component family protein [E] COG4176 ABC-type proline/glycine betaine transport system%2C permease component gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1327 CH60_1328 CH60_1328 proV proV 1419624 1420823 - glycine betaine/L-proline transport ATP binding subunit proV: glycine betaine/L-proline transport ATP binding subunit~[E] COG4175 ABC-type proline/glycine betaine transport system%2C ATPase component gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1328 CH60_1329 CH60_1329 CH60_1329 1421499 1422470 - ribonucleotide reductase%2C small chain family protein [F] COG0208 Ribonucleotide reductase%2C beta subunit gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1329 CH60_133 CH60_133 CH60_133 157578 158378 + domain amino terminal to FKBP-type peptidyl-prolyl isomerase family protein [O] COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_133 CH60_1330 CH60_1330 CH60_1330 1422595 1424676 - ribonucleoside-diphosphate reductase%2C alpha subunit nrdE_NrdA: ribonucleoside-diphosphate reductase%2C alpha subunit~[F] COG0209 Ribonucleotide reductase%2C alpha subunit gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1330 CH60_1331 CH60_1331 nrdI nrdI 1424727 1425131 - nrdI protein nrdI: nrdI protein~[F] COG1780 Protein involved in ribonucleotide reduction gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1331 CH60_1332 CH60_1332 nrdH nrdH 1425145 1425381 - glutaredoxin-like NrdH family protein glrX_NrdH: glutaredoxin-like NrdH family protein~[O] COG0695 Glutaredoxin and related proteins gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1332 CH60_1333 CH60_1333 CH60_1333 1425902 1426267 + acid shock repeat family protein gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1333 CH60_1334 CH60_1334 CH60_1334 1426745 1427080 + hypothetical protein conserved hypothetical protein gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1334 CH60_1335 CH60_1335 CH60_1335 1427315 1428523 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1335 CH60_1336 CH60_1336 CH60_1336 1428581 1429738 + outer membrane usher family protein [NU] COG3188 P pilus assembly protein%2C porin PapC gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1336 CH60_1337 CH60_1337 CH60_1337 1429723 1430331 + fimbrial family protein [NU] COG3539 P pilus assembly protein%2C pilin FimA gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1337 CH60_1338 CH60_1338 CH60_1338 1430436 1430960 + hypothetical protein conserved hypothetical protein~[S] COG3516 Uncharacterized protein conserved in bacteria gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1338 CH60_1339 CH60_1339 CH60_1339 1430984 1432486 + hypothetical protein conserved hypothetical protein~[S] COG3517 Uncharacterized protein conserved in bacteria gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1339 CH60_134 CH60_134 CH60_134 158632 159354 + sensory box protein [S] COG2964 Uncharacterized protein conserved in bacteria gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_134 CH60_1340 CH60_1340 CH60_1340 1432812 1433297 + type VI secretion system effector%2C Hcp1 family protein VI_effect_Hcp1: type VI secretion system effector%2C Hcp1 family protein~[S] COG3157 Hemolysin-coregulated protein (uncharacterized) gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1340 CH60_1341 CH60_1341 CH60_1341 1433571 1434110 + type VI secretion lipofamily protein [S] COG3521 Uncharacterized protein conserved in bacteria gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1341 CH60_1342 CH60_1342 CH60_1342 1434114 1435463 + hypothetical protein conserved hypothetical protein~[S] COG3522 Uncharacterized protein conserved in bacteria gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1342 CH60_1343 CH60_1343 CH60_1343 1435496 1436128 + type IV/VI secretion system%2C DotU family domain protein IV_VI_DotU: type IV/VI secretion system%2C DotU family domain protein~[S] COG3455 Uncharacterized protein conserved in bacteria gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1343 CH60_1344 CH60_1344 CH60_1344 1436142 1437164 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1344 CH60_1345 CH60_1345 CH60_1345 1437164 1437943 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1345 CH60_1346 CH60_1346 CH60_1346 1437959 1438795 + type VI secretion system peptidoglycan-associated domain protein type_VI_ompA: type VI secretion system peptidoglycan-associated domain~[N] COG1360 Flagellar motor protein gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1346 CH60_1347 CH60_1347 CH60_1347 1438804 1442631 + intracellular multiplication and macrophage-killing family protein [S] COG3523 Uncharacterized protein conserved in bacteria gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1347 CH60_1348 CH60_1348 CH60_1348 1442958 1445276 + Rhs element Vgr family protein vgr_GE: Rhs element Vgr family protein~[S] COG3501 Uncharacterized protein conserved in bacteria gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1348 CH60_1349 CH60_1349 CH60_1349 1445375 1445635 + PAAR motif family protein [M] COG3209 Rhs family protein gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1349 CH60_135 CH60_135 CH60_135 159354 159749 + dsrE/DsrF-like family protein [P] COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_135 CH60_1350 CH60_1350 CH60_1350 1445641 1446462 + hypothetical protein conserved hypothetical protein gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1350 CH60_1351 CH60_1351 CH60_1351 1446502 1447308 + impE family protein [R] COG4455 Protein of avirulence locus involved in temperature-dependent protein secretion gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1351 CH60_1352 CH60_1352 CH60_1352 1447858 1447998 - hypothetical protein gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1352 CH60_1353 CH60_1353 CH60_1353 1447421 1447900 + lysozyme family protein [S] COG3518 Uncharacterized protein conserved in bacteria gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1353 CH60_1354 CH60_1354 CH60_1354 1448088 1448900 + transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1354 CH60_1355 CH60_1355 CH60_1355 1448857 1449297 + transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1355 CH60_1356 CH60_1356 CH60_1356 1449309 1449587 - hypothetical protein conserved hypothetical protein gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1356 CH60_1357 CH60_1357 CH60_1357 1449646 1450113 - hypothetical protein conserved hypothetical protein gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1357 CH60_1358 CH60_1358 thiD thiD 1450635 1451435 + hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase~[H] COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1358 CH60_1359 CH60_1359 CH60_1359 1451497 1452384 - hypothetical protein conserved hypothetical protein gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1359 CH60_136 CH60_136 tusC tusC 159749 160114 + sulfur relay protein TusC/DsrF sulf_tusC_dsrF: sulfur relay protein TusC/DsrF~[P] COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_136 CH60_1360 CH60_1360 ivy ivy 1452615 1453124 + inhibitor of vertebrate lysozyme domain protein gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1360 CH60_1361 CH60_1361 yegS yegS 1453411 1454301 - lipid kinase YegS lip_kinase_YegS: lipid kinase YegS~[IR] COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1361 CH60_1362 CH60_1362 CH60_1362 1454937 1456331 - peptidase U32 family protein [O] COG0826 Collagenase and related proteases gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1362 CH60_1363 CH60_1363 CH60_1363 1456606 1456944 - hypothetical protein conserved hypothetical protein~[S] COG3422 Uncharacterized conserved protein gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1363 CH60_1364 CH60_1364 CH60_1364 1457081 1457800 - response regulator [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1364 CH60_1365 CH60_1365 CH60_1365 1457810 1459195 - HAMP domain protein [T] COG0642 Signal transduction histidine kinase gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1365 CH60_1366 CH60_1366 CH60_1366 1459226 1460623 - drug resistance MFS transporter%2C drug:H+ antiporter-2 family protein efflux_EmrB: drug resistance MFS transporter%2C drug:H+ antiporter-2 family protein~[GEPR] COG0477 Permeases of the major facilitator superfamily gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1366 CH60_1367 CH60_1367 CH60_1367 1460657 1463731 - acrB/AcrD/AcrF family protein [V] COG0841 Cation/multidrug efflux pump gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1367 CH60_1368 CH60_1368 CH60_1368 1463728 1466886 - acrB/AcrD/AcrF family protein [V] COG0841 Cation/multidrug efflux pump gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1368 CH60_1369 CH60_1369 CH60_1369 1466886 1468220 - efflux transporter%2C RND family%2C MFP subunit RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1369 CH60_137 CH60_137 dsrH dsrH 160134 160421 + sulfur relay protein TusB/DsrH sulf_tusB_dsrH: sulfur relay protein TusB/DsrH~[P] COG2168 Uncharacterized conserved protein involved in oxidation of intracellular sulfur gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_137 CH60_1370 CH60_1370 CH60_1370 1468584 1469669 - polyamine ABC transporter%2C ATP-binding family protein potA: polyamine ABC transporter%2C ATP-binding family protein~[E] COG3842 ABC-type spermidine/putrescine transport systems%2C ATPase components gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1370 CH60_1371 CH60_1371 CH60_1371 1470052 1471557 - aminotransferase class I and II family protein [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1371 CH60_1372 CH60_1372 gabT gabT 1471739 1473028 + 4-aminobutyrate transaminase GABAtrnsam: 4-aminobutyrate transaminase~[E] COG0160 4-aminobutyrate aminotransferase and related aminotransferases gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1372 CH60_1373 CH60_1373 CH60_1373 1473081 1474109 + bacterial extracellular solute-binding family protein [E] COG0687 Spermidine/putrescine-binding periplasmic protein gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1373 CH60_1374 CH60_1374 CH60_1374 1474156 1475421 + binding--dependent transport system inner membrane component family protein [E] COG1176 ABC-type spermidine/putrescine transport system%2C permease component I gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1374 CH60_1375 CH60_1375 CH60_1375 1475483 1476331 + binding--dependent transport system inner membrane component family protein [E] COG1177 ABC-type spermidine/putrescine transport system%2C permease component II gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1375 CH60_1376 CH60_1376 CH60_1376 1476603 1477955 - hsp70 family protein [O] COG0443 Molecular chaperone gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1376 CH60_1377 CH60_1377 mgtE mgtE 1478095 1479570 - magnesium transporter mgtE: magnesium transporter~[P] COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1377 CH60_1378 CH60_1378 CH60_1378 1479946 1481505 - ppx/GppA phosphatase family protein [FP] COG0248 Exopolyphosphatase gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1378 CH60_1379 CH60_1379 ppk1 ppk1 1481516 1483579 - polyphosphate kinase 1 poly_P_kin: polyphosphate kinase 1~[P] COG0855 Polyphosphate kinase gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1379 CH60_138 CH60_138 rpsL rpsL 160559 160933 + ribosomal protein S12 rpsL_bact: ribosomal protein S12~[J] COG0048 Ribosomal protein S12 gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_138 CH60_1380 CH60_1380 CH60_1380 1483850 1486081 + binding--dependent transport system inner membrane component family protein [R] COG4590 ABC-type uncharacterized transport system%2C permease component gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1380 CH60_1381 CH60_1381 pstA pstA 1486207 1487793 + phosphate ABC transporter%2C permease protein PstA 3a0107s02c: phosphate ABC transporter%2C permease protein PstA~[P] COG4985 ABC-type phosphate transport system%2C auxiliary component gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1381 CH60_1382 CH60_1382 pstB pstB 1487821 1488633 + phosphate ABC transporter%2C ATP-binding protein 3a0107s01c2: phosphate ABC transporter%2C ATP-binding protein~[P] COG1117 ABC-type phosphate transport system%2C ATPase component gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1382 CH60_1383 CH60_1383 fliU fliU 1488847 1489227 + flagellar biosynthetic protein fliU gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1383 CH60_1384 CH60_1384 CH60_1384 1489314 1490036 + putative n-methylation of lysine residues in flagellin gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1384 CH60_1385 CH60_1385 speG speG 1490130 1490675 - spermidine N(1)-acetyltransferase [J] COG1670 Acetyltransferases%2C including N-acetylases of ribosomal proteins gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1385 CH60_1386 CH60_1386 purN purN 1490904 1491542 - phosphoribosylglycinamide formyltransferase purN: phosphoribosylglycinamide formyltransferase~[F] COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1386 CH60_1387 CH60_1387 purM purM 1491657 1492700 - phosphoribosylformylglycinamidine cyclo-ligase purM: phosphoribosylformylglycinamidine cyclo-ligase~[F] COG0150 Phosphoribosylaminoimidazole (AIR) synthetase gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1387 CH60_1388 CH60_1388 upp upp 1493097 1493723 + uracil phosphoribosyltransferase upp: uracil phosphoribosyltransferase~[F] COG0035 Uracil phosphoribosyltransferase gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1388 CH60_1389 CH60_1389 CH60_1389 1493899 1494357 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1389 CH60_139 CH60_139 rpsG rpsG 161030 161500 + ribosomal protein S7 rpsG_bact: ribosomal protein S7~[J] COG0049 Ribosomal protein S7 gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_139 CH60_1390 CH60_1390 hda hda 1494545 1495252 + DnaA regulatory inactivator Hda dnaA_homol_Hda: DnaA regulatory inactivator Hda~[L] COG0593 ATPase involved in DNA replication initiation gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1390 CH60_1391 CH60_1391 arsC arsC 1495464 1495820 - arsenate reductase arsC: arsenate reductase~[P] COG1393 Arsenate reductase and related proteins%2C glutaredoxin family gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1391 CH60_1392 CH60_1392 CH60_1392 1495927 1497411 - peptidase M48 family protein [R] COG4783 Putative Zn-dependent protease%2C contains TPR repeats gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1392 CH60_1393 CH60_1393 CH60_1393 1497742 1498806 + hypothetical protein conserved hypothetical protein~[R] COG0628 Predicted permease gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1393 CH60_1394 CH60_1394 CH60_1394 1499406 1500101 + hypothetical protein conserved hypothetical protein gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1394 CH60_1395 CH60_1395 CH60_1395 1500105 1500524 + putative exported protein gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1395 CH60_1396 CH60_1396 CH60_1396 1500768 1501238 - putative peroxiredoxin bcp [O] COG1225 Peroxiredoxin gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1396 CH60_1397 CH60_1397 CH60_1397 1501241 1501810 - ACT domain protein [E] COG2716 Glycine cleavage system regulatory protein gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1397 CH60_1398 CH60_1398 dapA dapA 1501975 1502856 + 4-hydroxy-tetrahydrodipicolinate synthase dapA: 4-hydroxy-tetrahydrodipicolinate synthase~[EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1398 CH60_1399 CH60_1399 CH60_1399 1502874 1503932 + nlpB/DapX lipofamily protein [M] COG3317 Uncharacterized lipoprotein gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1399 CH60_14 CH60_14 uspA uspA 16290 16736 + universal stress protein A [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_14 CH60_140 CH60_140 fusA fusA 161594 163702 + translation elongation factor G EF-G: translation elongation factor G~[J] COG0480 Translation elongation factors (GTPases) gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_140 CH60_1400 CH60_1400 CH60_1400 1504107 1504565 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1400 CH60_1401 CH60_1401 purC purC 1504713 1505426 + phosphoribosylaminoimidazolesuccinocarboxamide synthase purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase~[F] COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1401 CH60_1402 CH60_1402 CH60_1402 1505645 1506511 + neutral zinc metallopeptidase family protein [R] COG2321 Predicted metalloprotease gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1402 CH60_1403 CH60_1403 CH60_1403 1506605 1507057 + hypothetical protein conserved hypothetical protein~[S] COG2707 Predicted membrane protein gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1403 CH60_1404 CH60_1404 CH60_1404 1507059 1509110 + acetyltransferase family protein [R] COG1444 Predicted P-loop ATPase fused to an acetyltransferase gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1404 CH60_1405 CH60_1405 CH60_1405 1509364 1509558 - hypothetical protein conserved hypothetical protein gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1405 CH60_1406 CH60_1406 CH60_1406 1509626 1510276 - D-alanyl-D-alanine carboxypeptidase family protein [M] COG1876 D-alanyl-D-alanine carboxypeptidase gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1406 CH60_1407 CH60_1407 dapE dapE 1510300 1511427 - succinyl-diaminopimelate desuccinylase dapE_proteo: succinyl-diaminopimelate desuccinylase~[E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1407 CH60_1408 CH60_1408 CH60_1408 1511429 1511827 - transcriptional regulator%2C Spx/MgsR family protein arsC_related: transcriptional regulator%2C Spx/MgsR family protein~[P] COG1393 Arsenate reductase and related proteins%2C glutaredoxin family gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1408 CH60_1409 CH60_1409 CH60_1409 1511987 1512460 - tetratricopeptide repeat family protein [R] COG0457 FOG: TPR repeat gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1409 CH60_141 CH60_141 tuf tuf 163775 164959 + translation elongation factor Tu EF-Tu: translation elongation factor Tu~[J] COG0050 GTPases - translation elongation factors gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_141 CH60_1410 CH60_1410 CH60_1410 1512771 1513859 + bacterial extracellular solute-binding family protein [P] COG1840 ABC-type Fe3+ transport system%2C periplasmic component gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1410 CH60_1411 CH60_1411 CH60_1411 1513954 1515723 + binding--dependent transport system inner membrane component family protein [P] COG1178 ABC-type Fe3+ transport system%2C permease component gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1411 CH60_1412 CH60_1412 CH60_1412 1515716 1516786 + ABC transporter family protein [E] COG3842 ABC-type spermidine/putrescine transport systems%2C ATPase components gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1412 CH60_1413 CH60_1413 CH60_1413 1517267 1518937 + type I phosphodiesterase / nucleotide pyrophosphatase family protein [P] COG3119 Arylsulfatase A and related enzymes gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1413 CH60_1414 CH60_1414 CH60_1414 1518995 1520170 + anaerobic sulfatase maturase sulfatase_rSAM: anaerobic sulfatase maturase~[R] COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1414 CH60_1415 CH60_1415 CH60_1415 1520924 1521472 - hypothetical protein conserved hypothetical protein~[R] COG1988 Predicted membrane-bound metal-dependent hydrolases gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1415 CH60_1416 CH60_1416 CH60_1416 1521761 1522345 - hypothetical protein conserved hypothetical protein gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1416 CH60_1417 CH60_1417 CH60_1417 1522576 1525707 - RND transporter%2C hydrophobe/amphiphile efflux-1 family protein 2A0602: RND transporter%2C hydrophobe/amphiphile efflux-1 family protein~[V] COG0841 Cation/multidrug efflux pump gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1417 CH60_1418 CH60_1418 CH60_1418 1526122 1526400 + winged helix-turn helix family protein [S] COG4519 Uncharacterized protein conserved in bacteria gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1418 CH60_1419 CH60_1419 CH60_1419 1526413 1527042 - bacterial regulatory s%2C luxR family protein [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1419 CH60_142 CH60_142 CH60_142 165162 165620 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_142 CH60_1420 CH60_1420 napF napF 1527875 1528378 + ferredoxin-type protein NapF napF: ferredoxin-type protein NapF~[C] COG1145 Ferredoxin gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1420 CH60_1421 CH60_1421 CH60_1421 1528368 1528634 + napD family protein [P] COG3062 Uncharacterized protein involved in formation of periplasmic nitrate reductase gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1421 CH60_1422 CH60_1422 napA napA 1528631 1531120 + periplasmic nitrate reductase%2C large subunit NAPA: periplasmic nitrate reductase%2C large subunit~[C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1422 CH60_1423 CH60_1423 CH60_1423 1531269 1531670 + nitrate reductase cytochrome c-type subunit family protein [C] COG3043 Nitrate reductase cytochrome c-type subunit gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1423 CH60_1424 CH60_1424 CH60_1424 1531698 1532297 + periplasmic nitrate (or nitrite) reductase c-type cytochrome%2C NapC/NirT family protein napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome%2C NapC/NirT family protein~[C] COG3005 Nitrate/TMAO reductases%2C membrane-bound tetraheme cytochrome c subunit gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1424 CH60_1425 CH60_1425 CH60_1425 1532481 1533077 + nudix-type nucleoside diphosphatase%2C YffH/AdpP family protein [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1425 CH60_1426 CH60_1426 CH60_1426 1533273 1535552 + malic enzyme%2C NAD binding domain protein [C] COG0281 Malic enzyme gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1426 CH60_1427 CH60_1427 CH60_1427 1535703 1536161 - hypothetical protein conserved hypothetical protein~[S] COG1671 Uncharacterized protein conserved in bacteria gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1427 CH60_1428 CH60_1428 CH60_1428 1536161 1537090 - coproporphyrinogen III oxidase family protein [H] COG0408 Coproporphyrinogen III oxidase gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1428 CH60_1429 CH60_1429 CH60_1429 1537373 1537798 + acetyltransferase domain protein [R] COG0456 Acetyltransferases gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1429 CH60_143 CH60_143 bfd bfd 165808 166002 + bacterioferritin-associated ferredoxin [P] COG2906 Bacterioferritin-associated ferredoxin gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_143 CH60_1430 CH60_1430 CH60_1430 1537980 1538165 - hypothetical protein conserved hypothetical protein gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1430 CH60_1431 CH60_1431 CH60_1431 1538271 1538687 + putative membrane protein gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1431 CH60_1432 CH60_1432 CH60_1432 1538779 1541058 - outer membrane autotransporter barrel domain protein autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1432 CH60_1433 CH60_1433 CH60_1433 1541545 1541958 - OB-fold nucleic acid binding domain protein [S] COG3111 Uncharacterized conserved protein gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1433 CH60_1434 CH60_1434 CH60_1434 1542317 1542928 + hypothetical protein conserved hypothetical protein gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1434 CH60_1435 CH60_1435 CH60_1435 1543106 1544005 + Dyp-type peroxidase family protein dyp_perox_fam: Dyp-type peroxidase family protein~[P] COG2837 Predicted iron-dependent peroxidase gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1435 CH60_1436 CH60_1436 CH60_1436 1544103 1544996 - dihydrodipicolinate synthetase family protein [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1436 CH60_1437 CH60_1437 CH60_1437 1545059 1545760 - N-acetylmannosamine-6-phosphate epimerase family protein [G] COG3010 Putative N-acetylmannosamine-6-phosphate epimerase gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1437 CH60_1438 CH60_1438 yopM yopM 1545966 1547093 - outer membrane protein yopM [S] COG4886 Leucine-rich repeat (LRR) protein gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1438 CH60_1439 CH60_1439 nanK nanK 1547362 1548234 + N-acetylmannosamine kinase [KG] COG1940 Transcriptional regulator/sugar kinase gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1439 CH60_144 CH60_144 bfr bfr 166081 166554 + bacterioferritin bfr: bacterioferritin~[P] COG2193 Bacterioferritin (cytochrome b1) gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_144 CH60_1440 CH60_1440 CH60_1440 1548316 1548786 + yhcH/YjgK/YiaL family protein [G] COG2731 Beta-galactosidase%2C beta subunit gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1440 CH60_1441 CH60_1441 CH60_1441 1548975 1549853 + SIS domain protein [K] COG1737 Transcriptional regulators gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1441 CH60_1442 CH60_1442 CH60_1442 1550458 1551990 + putative sialic acid transporter [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1442 CH60_1443 CH60_1443 CH60_1443 1552305 1553342 + sulfate ABC transporter%2C sulfate-binding family protein 3a0106s03: sulfate ABC transporter%2C sulfate-binding family protein~[P] COG4150 ABC-type sulfate transport system%2C periplasmic component gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1443 CH60_1444 CH60_1444 cysT cysT 1553342 1554175 + sulfate ABC transporter%2C permease protein CysT permease_CysT: sulfate ABC transporter%2C permease protein CysT~[O] COG0555 ABC-type sulfate transport system%2C permease component gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1444 CH60_1445 CH60_1445 cysW cysW 1554175 1555050 + sulfate ABC transporter%2C permease protein CysW permease_CysW: sulfate ABC transporter%2C permease protein CysW~[P] COG4208 ABC-type sulfate transport system%2C permease component gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1445 CH60_1446 CH60_1446 cysA cysA 1555040 1556131 + sulfate ABC transporter%2C ATP-binding family protein 3a0106s01: sulfate ABC transporter%2C ATP-binding family protein~[P] COG1118 ABC-type sulfate/molybdate transport systems%2C ATPase component gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1446 CH60_1447 CH60_1447 cysM cysM 1556302 1557180 + cysteine synthase B cysM: cysteine synthase B~[E] COG0031 Cysteine synthase gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1447 CH60_1448 CH60_1448 CH60_1448 1557425 1558657 + hypothetical protein conserved hypothetical protein~[S] COG4886 Leucine-rich repeat (LRR) protein gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1448 CH60_1449 CH60_1449 phoP phoP 1559038 1559745 - alkaline phosphatase synthesis transcriptional regulatory protein phoP [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1449 CH60_145 CH60_145 CH60_145 166653 166844 + hypothetical protein gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_145 CH60_1450 CH60_1450 CH60_1450 1559742 1561286 - his Kinase A domain protein [T] COG0642 Signal transduction histidine kinase gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1450 CH60_1451 CH60_1451 CH60_1451 1561519 1562937 - von Willebrand factor type A domain protein [R] COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1451 CH60_1452 CH60_1452 CH60_1452 1563637 1564818 + C-S lyase family protein C_S_lyase_PatB: C-S lyase family protein~[E] COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1452 CH60_1453 CH60_1453 CH60_1453 1564852 1565043 + hypothetical protein creatinase/Prolidase N-terminal domain protein~[E] COG0006 Xaa-Pro aminopeptidase gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1453 CH60_1454 CH60_1454 CH60_1454 1565040 1566071 + hypothetical protein creatinase/Prolidase N-terminal domain protein~[E] COG0006 Xaa-Pro aminopeptidase gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1454 CH60_1455 CH60_1455 CH60_1455 1566214 1566411 + hypothetical protein conserved hypothetical protein gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1455 CH60_1456 CH60_1456 CH60_1456 1566408 1567868 + putative membrane protein [ER] COG0591 Na+/proline symporter gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1456 CH60_1457 CH60_1457 CH60_1457 1567928 1569574 + FAD dependent oxidoreductase family protein [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1457 CH60_1458 CH60_1458 CH60_1458 1569829 1571838 - ABC transporter family protein [V] COG1136 ABC-type antimicrobial peptide transport system%2C ATPase component gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1458 CH60_1459 CH60_1459 CH60_1459 1571869 1573074 - efflux transporter%2C RND family%2C MFP subunit RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1459 CH60_146 CH60_146 rpsJ rpsJ 166968 167279 + ribosomal protein S10 rpsJ_bact: ribosomal protein S10~[J] COG0051 Ribosomal protein S10 gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_146 CH60_1460 CH60_1460 CH60_1460 1573262 1573945 + response regulator [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1460 CH60_1461 CH60_1461 CH60_1461 1573971 1575320 + HAMP domain protein [T] COG0642 Signal transduction histidine kinase gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1461 CH60_1462 CH60_1462 CH60_1462 1575406 1575600 + hypothetical protein conserved hypothetical protein gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1462 CH60_1463 CH60_1463 CH60_1463 1575590 1576048 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1463 CH60_1464 CH60_1464 crr crr 1576191 1576700 - glucose-specific phosphotransferase enzyme IIA component [G] COG2190 Phosphotransferase system IIA components gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1464 CH60_1465 CH60_1465 ptsP ptsP 1576749 1578476 - phosphoenolpyruvate-protein phosphotransferase PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase~[G] COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1465 CH60_1466 CH60_1466 ptsH ptsH 1578525 1578782 - phosphocarrier protein HPr [G] COG1925 Phosphotransferase system%2C HPr-related proteins gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1466 CH60_1467 CH60_1467 cysK cysK 1579281 1580249 - cysteine synthase A cysK: cysteine synthase A~[E] COG0031 Cysteine synthase gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1467 CH60_1468 CH60_1468 cysZ cysZ 1580406 1581140 - protein CysZ [E] COG2981 Uncharacterized protein involved in cysteine biosynthesis gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1468 CH60_1469 CH60_1469 zipA zipA 1581389 1582375 + cell division protein ZipA septum_zipA: cell division protein ZipA~[D] COG3115 Cell division protein gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1469 CH60_147 CH60_147 rplC rplC 167312 167941 + 50S ribosomal protein L3 L3_bact: 50S ribosomal protein L3~[J] COG0087 Ribosomal protein L3 gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_147 CH60_1470 CH60_1470 ligA ligA 1582466 1584478 + DNA ligase%2C NAD-dependent dnlj: DNA ligase%2C NAD-dependent~[L] COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1470 CH60_1471 CH60_1471 CH60_1471 1584498 1584713 + hypothetical protein conserved hypothetical protein~[S] COG3530 Uncharacterized protein conserved in bacteria gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1471 CH60_1472 CH60_1472 CH60_1472 1584814 1585161 - flxA-like family protein gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1472 CH60_1473 CH60_1473 CH60_1473 1585293 1585898 - hypothetical protein conserved hypothetical protein~[S] COG3575 Uncharacterized protein conserved in bacteria gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1473 CH60_1474 CH60_1474 CH60_1474 1586093 1586168 - tRNA-Ala tRNA gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1474 CH60_1475 CH60_1475 gltX gltX 1586400 1587815 - glutamate--tRNA ligase gltX_bact: glutamate--tRNA ligase~[J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1475 CH60_1476 CH60_1476 CH60_1476 1588090 1588165 + tRNA-Val tRNA gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1476 CH60_1477 CH60_1477 CH60_1477 1588202 1588277 + tRNA-Val tRNA gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1477 CH60_1478 CH60_1478 CH60_1478 1588322 1588397 + tRNA-Val tRNA gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1478 CH60_1479 CH60_1479 CH60_1479 1588597 1588672 + tRNA-Lys tRNA gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1479 CH60_148 CH60_148 rplD rplD 167958 168563 + 50S ribosomal protein L4 rplD_bact: 50S ribosomal protein L4~[J] COG0088 Ribosomal protein L4 gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_148 CH60_1480 CH60_1480 CH60_1480 1589049 1590233 - na+ dependent nucleoside transporter family protein [F] COG1972 Nucleoside permease gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1480 CH60_1481 CH60_1481 CH60_1481 1590684 1591913 + metal ion transporter%2C metal ion family protein nramp: metal ion transporter%2C metal ion family protein~[P] COG1914 Mn2+ and Fe2+ transporters of the NRAMP family gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1481 CH60_1482 CH60_1482 CH60_1482 1592006 1592419 - hypothetical protein conserved hypothetical protein gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1482 CH60_1483 CH60_1483 CH60_1483 1592590 1593579 - aldo/keto reductase family protein [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1483 CH60_1484 CH60_1484 CH60_1484 1593715 1594593 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1484 CH60_1485 CH60_1485 CH60_1485 1594696 1595172 + bacterial Transmembrane Pair family protein [S] COG4125 Predicted membrane protein gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1485 CH60_1486 CH60_1486 glk glk 1595353 1596324 + glucokinase glk: glucokinase~[G] COG0837 Glucokinase gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1486 CH60_1487 CH60_1487 CH60_1487 1596402 1597649 - phytanoyl-CoA dioxygenase family protein gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1487 CH60_1488 CH60_1488 CH60_1488 1597915 1599150 + aminotransferase class I and II family protein [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1488 CH60_1489 CH60_1489 CH60_1489 1599395 1599919 + hypothetical protein conserved hypothetical protein~[C] COG3038 Cytochrome B561 gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1489 CH60_149 CH60_149 rplW rplW 168560 168862 + 50S ribosomal protein L23 [J] COG0089 Ribosomal protein L23 gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_149 CH60_1490 CH60_1490 CH60_1490 1600014 1600445 - hypothetical protein conserved hypothetical protein~[S] COG1598 Uncharacterized conserved protein gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1490 CH60_1491 CH60_1491 CH60_1491 1601035 1601706 + tolB amino-terminal domain protein [M] COG1462 Uncharacterized protein involved in formation of curli polymers gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1491 CH60_1492 CH60_1492 CH60_1492 1601733 1602089 + putative lipoprotein [S] COG4259 Uncharacterized protein conserved in bacteria gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1492 CH60_1493 CH60_1493 CH60_1493 1602086 1602742 + hypothetical protein conserved hypothetical protein~[S] COG4380 Uncharacterized protein conserved in bacteria gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1493 CH60_1494 CH60_1494 CH60_1494 1602988 1603557 - 4Fe-4S binding domain protein [C] COG1145 Ferredoxin gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1494 CH60_1495 CH60_1495 CH60_1495 1603554 1604150 - nitrate reductase delta subunit [R] COG3381 Uncharacterized component of anaerobic dehydrogenases gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1495 CH60_1496 CH60_1496 CH60_1496 1604508 1605284 - DMSO reductase anchor subunit family protein [R] COG3302 DMSO reductase anchor subunit gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1496 CH60_1497 CH60_1497 dmsB dmsB 1605286 1605903 - dimethylsulfoxide reductase%2C chain B DMSO_dmsB: dimethylsulfoxide reductase%2C chain B~[C] COG0437 Fe-S-cluster-containing hydrogenase components 1 gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1497 CH60_1498 CH60_1498 CH60_1498 1605915 1608341 - anaerobic dimethyl sulfoxide reductase%2C A subunit%2C DmsA/YnfE family protein dmsA_ynfE: anaerobic dimethyl sulfoxide reductase%2C A subunit%2C DmsA/YnfE family protein~[C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1498 CH60_1499 CH60_1499 CH60_1499 1609172 1610020 + hypothetical protein conserved hypothetical protein gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1499 CH60_15 CH60_15 CH60_15 16983 18326 + glu/Leu/Phe/Val dehydrogenase%2C dimerization domain protein [E] COG0334 Glutamate dehydrogenase/leucine dehydrogenase gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_15 CH60_150 CH60_150 rplB rplB 168879 169703 + ribosomal protein L2 rplB_bact: ribosomal protein L2~[J] COG0090 Ribosomal protein L2 gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_150 CH60_1500 CH60_1500 CH60_1500 1610250 1610729 - type VI secretion system effector%2C Hcp1 family protein VI_effect_Hcp1: type VI secretion system effector%2C Hcp1 family protein~[S] COG3157 Hemolysin-coregulated protein (uncharacterized) gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1500 CH60_1501 CH60_1501 CH60_1501 1611196 1611720 + hypothetical protein conserved hypothetical protein~[S] COG4331 Predicted membrane protein gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1501 CH60_1502 CH60_1502 CH60_1502 1611793 1612842 - ABC transporter family protein [E] COG3842 ABC-type spermidine/putrescine transport systems%2C ATPase components gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1502 CH60_1503 CH60_1503 CH60_1503 1612839 1614425 - binding--dependent transport system inner membrane component family protein [P] COG1178 ABC-type Fe3+ transport system%2C permease component gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1503 CH60_1504 CH60_1504 yfuA yfuA 1614481 1615500 - yfuA [P] COG1840 ABC-type Fe3+ transport system%2C periplasmic component gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1504 CH60_1505 CH60_1505 mltB mltB 1615829 1616923 + lytic murein transglycosylase B mltB: lytic murein transglycosylase B~[M] COG2951 Membrane-bound lytic murein transglycosylase B gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1505 CH60_1506 CH60_1506 CH60_1506 1618192 1618794 + bacterial regulatory s%2C luxR family protein [K] COG2771 DNA-binding HTH domain-containing proteins gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1506 CH60_1507 CH60_1507 CH60_1507 1619152 1619634 - hypothetical protein conserved hypothetical protein~[S] COG5435 Uncharacterized conserved protein gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1507 CH60_1508 CH60_1508 CH60_1508 1619631 1621313 - ompA family protein [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1508 CH60_1509 CH60_1509 CH60_1509 1621314 1622015 - putative membrane protein gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1509 CH60_151 CH60_151 rpsS rpsS 169718 169996 + ribosomal protein S19 rpsS_bact: ribosomal protein S19~[J] COG0185 Ribosomal protein S19 gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_151 CH60_1510 CH60_1510 CH60_1510 1622012 1623349 - glycosyltransferase family protein gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1510 CH60_1511 CH60_1511 CH60_1511 1623389 1624420 - fimbrial family protein gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1511 CH60_1512 CH60_1512 CH60_1512 1624427 1625608 - hypothetical protein impA-related N-terminal family protein~[S] COG3515 Uncharacterized protein conserved in bacteria gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1512 CH60_1513 CH60_1513 CH60_1513 1625707 1626732 - hypothetical protein conserved hypothetical protein~[S] COG3520 Uncharacterized protein conserved in bacteria gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1513 CH60_1514 CH60_1514 CH60_1514 1626732 1628567 - hypothetical protein conserved hypothetical protein~[S] COG3519 Uncharacterized protein conserved in bacteria gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1514 CH60_1515 CH60_1515 clpV clpV 1629395 1632070 + type VI secretion ATPase%2C ClpV1 family VI_ClpV1: type VI secretion ATPase%2C ClpV1 family~[O] COG0542 ATPases with chaperone activity%2C ATP-binding subunit gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1515 CH60_1516 CH60_1516 CH60_1516 1632271 1632816 + fimbrial family protein [NU] COG3539 P pilus assembly protein%2C pilin FimA gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1516 CH60_1517 CH60_1517 CH60_1517 1632973 1633734 + hypothetical protein pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1517 CH60_1518 CH60_1518 CH60_1518 1633862 1635412 + hypothetical protein papC N-terminal domain protein~[NU] COG3188 P pilus assembly protein%2C porin PapC gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1518 CH60_1519 CH60_1519 CH60_1519 1635434 1636642 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1519 CH60_152 CH60_152 rplV rplV 170011 170343 + ribosomal protein L22 rplV_bact: ribosomal protein L22~[J] COG0091 Ribosomal protein L22 gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_152 CH60_1520 CH60_1520 CH60_1520 1636704 1637069 - hypothetical protein conserved hypothetical protein gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1520 CH60_1521 CH60_1521 CH60_1521 1637234 1637572 - mbeD/MobD like family protein gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1521 CH60_1522 CH60_1522 cspG cspG 1638080 1638292 + cold shock-like protein CspG [K] COG1278 Cold shock proteins gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1522 CH60_1523 CH60_1523 CH60_1523 1639085 1640662 + bacterial extracellular solute-binding s%2C 5 Middle family protein [E] COG0747 ABC-type dipeptide transport system%2C periplasmic component gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1523 CH60_1524 CH60_1524 CH60_1524 1640662 1641630 + binding--dependent transport system inner membrane component family protein [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1524 CH60_1525 CH60_1525 CH60_1525 1641627 1642433 + binding--dependent transport system inner membrane component family protein [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1525 CH60_1526 CH60_1526 CH60_1526 1642433 1643239 + ABC transporter family protein [R] COG1123 ATPase components of various ABC-type transport systems%2C contain duplicated ATPase gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1526 CH60_1527 CH60_1527 CH60_1527 1643232 1643897 + ABC transporter family protein [EP] COG1124 ABC-type dipeptide/oligopeptide/nickel transport system%2C ATPase component gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1527 CH60_1528 CH60_1528 CH60_1528 1644016 1644141 + hypothetical protein conserved hypothetical protein gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1528 CH60_1529 CH60_1529 ureA ureA 1645096 1645398 + urease subunit gamma [E] COG0831 Urea amidohydrolase (urease) gamma subunit gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1529 CH60_153 CH60_153 rpsC rpsC 170361 171059 + ribosomal protein S3 rpsC_bact: ribosomal protein S3~[J] COG0092 Ribosomal protein S3 gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_153 CH60_1530 CH60_1530 ureB ureB 1645451 1645885 + urease subunit beta [E] COG0832 Urea amidohydrolase (urease) beta subunit gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1530 CH60_1531 CH60_1531 ureC ureC 1645975 1647693 + urease%2C alpha subunit urease_alph: urease%2C alpha subunit~[E] COG0804 Urea amidohydrolase (urease) alpha subunit gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1531 CH60_1532 CH60_1532 CH60_1532 1647989 1648684 + hypothetical protein ureE urease accessory%2C C-terminal domain protein~[O] COG2371 Urease accessory protein UreE gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1532 CH60_1533 CH60_1533 CH60_1533 1648706 1649392 + ureF family protein [O] COG0830 Urease accessory protein UreF gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1533 CH60_1534 CH60_1534 ureG ureG 1649519 1650181 + urease accessory protein UreG ureG: urease accessory protein UreG~[OK] COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1534 CH60_1535 CH60_1535 CH60_1535 1650178 1651011 + ureD urease accessory family protein [O] COG0829 Urease accessory protein UreH gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1535 CH60_1536 CH60_1536 yut yut 1651336 1652328 + urea transporter urea_trans_yut: urea transporter~[E] COG4413 Urea transporter gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1536 CH60_1537 CH60_1537 CH60_1537 1652477 1653535 + transition metal uptake transporter%2C Ni2+-Co2+ transporter family protein nico: transition metal uptake transporter%2C Ni2+-Co2+ transporter family protein~[P] COG3376 High-affinity nickel permease gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1537 CH60_1538 CH60_1538 hdeB hdeB 1653704 1654033 - protein hdeB gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1538 CH60_1539 CH60_1539 CH60_1539 1654646 1655821 + trkA-N domain protein [P] COG1226 Kef-type K+ transport systems%2C predicted NAD-binding component gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1539 CH60_154 CH60_154 rplP rplP 171072 171482 + ribosomal protein L16 rplP_bact: ribosomal protein L16~[J] COG0197 Ribosomal protein L16/L10E gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_154 CH60_1540 CH60_1540 CH60_1540 1655919 1656323 - crcB-like family protein [D] COG0239 Integral membrane protein possibly involved in chromosome condensation gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1540 CH60_1541 CH60_1541 CH60_1541 1656339 1656719 - crcB-like family protein [D] COG0239 Integral membrane protein possibly involved in chromosome condensation gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1541 CH60_1542 CH60_1542 chbB chbB 1657760 1658077 + N%2CN'-diacetylchitobiose-specific phosphotransferase enzyme IIB component [G] COG1440 Phosphotransferase system cellobiose-specific component IIB gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1542 CH60_1543 CH60_1543 celB celB 1658088 1659449 + PTS system%2C cellobiose-specific IIC component cello_pts_IIC: PTS system%2C cellobiose-specific IIC component~[G] COG1455 Phosphotransferase system cellobiose-specific component IIC gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1543 CH60_1544 CH60_1544 chbA chbA 1659616 1659963 + N%2CN'-diacetylchitobiose-specific phosphotransferase enzyme IIA component [G] COG1447 Phosphotransferase system cellobiose-specific component IIA gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1544 CH60_1545 CH60_1545 chbR chbR 1660012 1660842 + HTH-type transcriptional regulator ChbR [K] COG2207 AraC-type DNA-binding domain-containing proteins gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1545 CH60_1546 CH60_1546 CH60_1546 1660894 1661655 + ydjC-like family protein [S] COG3394 Uncharacterized protein conserved in bacteria gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1546 CH60_1547 CH60_1547 CH60_1547 1661662 1661838 - putative membrane protein gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1547 CH60_1548 CH60_1548 CH60_1548 1661950 1662318 - hypothetical protein conserved hypothetical protein~[S] COG4461 Uncharacterized protein conserved in bacteria%2C putative lipoprotein gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1548 CH60_1549 CH60_1549 seqA seqA 1662813 1663340 + protein seqA [L] COG3057 Negative regulator of replication initiationR gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1549 CH60_155 CH60_155 rpmC rpmC 171482 171673 + ribosomal protein L29 L29: ribosomal protein L29~[J] COG0255 Ribosomal protein L29 gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_155 CH60_1550 CH60_1550 pgm pgm 1663413 1665056 + phosphoglucomutase%2C alpha-D-glucose phosphate-specific pgm: phosphoglucomutase%2C alpha-D-glucose phosphate-specific~[G] COG0033 Phosphoglucomutase gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1550 CH60_1551 CH60_1551 CH60_1551 1665274 1665387 + hypothetical protein conserved hypothetical protein gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1551 CH60_1552 CH60_1552 CH60_1552 1665430 1665672 + hypothetical protein conserved hypothetical protein gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1552 CH60_1553 CH60_1553 CH60_1553 1665800 1666228 - eamA-like transporter family protein [S] COG2510 Predicted membrane protein gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1553 CH60_1554 CH60_1554 CH60_1554 1666323 1666952 - hypothetical protein transcriptional regulatory%2C C terminal family protein~[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1554 CH60_1555 CH60_1555 CH60_1555 1667245 1669971 - universal stress family protein [T] COG2205 Osmosensitive K+ channel histidine kinase gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1555 CH60_1556 CH60_1556 kdpC kdpC 1669981 1670583 - K+-transporting ATPase%2C C subunit kdpC: K+-transporting ATPase%2C C subunit~[P] COG2156 K+-transporting ATPase%2C c chain gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1556 CH60_1557 CH60_1557 kdpB kdpB 1670795 1672861 - K+-transporting ATPase%2C B subunit kdpB: K+-transporting ATPase%2C B subunit~[P] COG2216 High-affinity K+ transport system%2C ATPase chain B gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1557 CH60_1558 CH60_1558 kdpA kdpA 1672955 1674643 - K+-transporting ATPase%2C A subunit kdpA: K+-transporting ATPase%2C A subunit~[P] COG2060 K+-transporting ATPase%2C A chain gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1558 CH60_1559 CH60_1559 CH60_1559 1675138 1675344 + hypothetical protein conserved hypothetical protein gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1559 CH60_156 CH60_156 rpsQ rpsQ 171673 171927 + 30S ribosomal protein S17 S17_bact: 30S ribosomal protein S17~[J] COG0186 Ribosomal protein S17 gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_156 CH60_1560 CH60_1560 CH60_1560 1675683 1676165 + hypothetical protein conserved hypothetical protein~[S] COG3272 Uncharacterized conserved protein gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1560 CH60_1561 CH60_1561 CH60_1561 1676271 1677734 + FAD binding domain of DNA photolyase family protein [L] COG0415 Deoxyribodipyrimidine photolyase gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1561 CH60_1562 CH60_1562 CH60_1562 1677725 1678762 + cAMP phosphodiesterases class-II family protein [T] COG5212 Low-affinity cAMP phosphodiesterase gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1562 CH60_1563 CH60_1563 CH60_1563 1678905 1679648 + NIF3 family protein [S] COG0327 Uncharacterized conserved protein gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1563 CH60_1564 CH60_1564 CH60_1564 1679733 1679888 - hypothetical protein conserved hypothetical protein gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1564 CH60_1565 CH60_1565 CH60_1565 1680306 1680812 + allophanate hydrolase subunit 1 family protein [E] COG2049 Allophanate hydrolase subunit 1 gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1565 CH60_1566 CH60_1566 CH60_1566 1680917 1681867 + hypothetical protein conserved hypothetical protein~[E] COG1984 Allophanate hydrolase subunit 2 gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1566 CH60_1567 CH60_1567 CH60_1567 1681864 1682601 + lamB/YcsF family protein [R] COG1540 Uncharacterized proteins%2C homologs of lactam utilization protein B gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1567 CH60_1568 CH60_1568 CH60_1568 1682813 1683418 + hypothetical protein conserved hypothetical protein~[S] COG3819 Predicted membrane protein gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1568 CH60_1569 CH60_1569 CH60_1569 1683415 1684434 + hypothetical protein conserved hypothetical protein~[S] COG3817 Predicted membrane protein gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1569 CH60_157 CH60_157 rplN rplN 172108 172479 + ribosomal protein L14 rplN_bact: ribosomal protein L14~[J] COG0093 Ribosomal protein L14 gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_157 CH60_1570 CH60_1570 pcp pcp 1684444 1685091 + pyroglutamyl-peptidase I pyro_pdase: pyroglutamyl-peptidase I~[O] COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1570 CH60_1571 CH60_1571 ung ung 1685182 1685868 - uracil-DNA glycosylase ung: uracil-DNA glycosylase~[L] COG0692 Uracil DNA glycosylase gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1571 CH60_1572 CH60_1572 grcA grcA 1686221 1686604 + autonomous glycyl radical cofactor GrcA spare_glycyl: autonomous glycyl radical cofactor GrcA~[R] COG3445 Acid-induced glycyl radical enzyme gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1572 CH60_1573 CH60_1573 phlA phlA 1686783 1687745 + extracellular phospholipase A1 gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1573 CH60_1574 CH60_1574 CH60_1574 1687738 1687836 + hypothetical protein conserved hypothetical protein gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1574 CH60_1575 CH60_1575 CH60_1575 1687823 1688479 + ankyrin repeat family protein [R] COG0666 FOG: Ankyrin repeat gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1575 CH60_1576 CH60_1576 CH60_1576 1688433 1688582 + hypothetical protein conserved hypothetical protein gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1576 CH60_1577 CH60_1577 CH60_1577 1688610 1689935 - DEAD/DEAH box helicase family protein pseudogene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1577 CH60_1579 CH60_1579 CH60_1579 1690178 1690933 + methyltransferase small domain protein [R] COG4123 Predicted O-methyltransferase gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1579 CH60_158 CH60_158 rplX rplX 172490 172804 + ribosomal protein L24 rplX_bact: ribosomal protein L24~[J] COG0198 Ribosomal protein L24 gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_158 CH60_1580 CH60_1580 nadB nadB 1691216 1692817 - L-aspartate oxidase nadB: L-aspartate oxidase~[H] COG0029 Aspartate oxidase gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1580 CH60_1581 CH60_1581 rpoE rpoE 1693041 1693616 + RNA polymerase sigma factor RpoE rpoE_Sigma70: RNA polymerase sigma factor RpoE~[K] COG1595 DNA-directed RNA polymerase specialized sigma subunit%2C sigma24 homolog gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1581 CH60_1582 CH60_1582 CH60_1582 1693642 1694298 + hypothetical protein anti sigma-E RseA%2C N-terminal domain protein~[T] COG3073 Negative regulator of sigma E activity gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1582 CH60_1583 CH60_1583 CH60_1583 1694298 1695254 + mucB/RseB family protein [T] COG3026 Negative regulator of sigma E activity gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1583 CH60_1584 CH60_1584 CH60_1584 1695251 1695706 + positive regulator of sigma(E)%2C RseC/MucC family protein [T] COG3086 Positive regulator of sigma E activity gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1584 CH60_1585 CH60_1585 CH60_1585 1695727 1696581 - putative membrane protein gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1585 CH60_1586 CH60_1586 lepA lepA 1697081 1698880 + elongation factor 4 lepA: elongation factor 4~[M] COG0481 Membrane GTPase LepA gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1586 CH60_1587 CH60_1587 lepB lepB 1698890 1699888 + signal peptidase I sigpep_I_bact: signal peptidase I~[U] COG0681 Signal peptidase I gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1587 CH60_1588 CH60_1588 rnc rnc 1700240 1700920 + ribonuclease III RNaseIII: ribonuclease III~[K] COG0571 dsRNA-specific ribonuclease gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1588 CH60_1589 CH60_1589 era era 1700917 1701828 + GTP-binding protein Era era: GTP-binding protein Era~[R] COG1159 GTPase gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1589 CH60_159 CH60_159 rplE rplE 172819 173358 + 50S ribosomal protein L5 [J] COG0094 Ribosomal protein L5 gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_159 CH60_1590 CH60_1590 recO recO 1701838 1702563 + DNA repair protein RecO reco: DNA repair protein RecO~[L] COG1381 Recombinational DNA repair protein (RecF pathway) gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1590 CH60_1591 CH60_1591 pdxJ pdxJ 1702722 1703453 + pyridoxine 5'-phosphate synthase pdxJ: pyridoxine 5'-phosphate synthase~[H] COG0854 Pyridoxal phosphate biosynthesis protein gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1591 CH60_1592 CH60_1592 acpS acpS 1703453 1703833 + holo-[acyl-carrier-protein] synthase acpS: holo-[acyl-carrier-protein] synthase~[I] COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1592 CH60_1593 CH60_1593 CH60_1593 1704035 1704493 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1593 CH60_1594 CH60_1594 CH60_1594 1704649 1704909 - hypothetical protein conserved hypothetical protein~[C] COG1145 Ferredoxin gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1594 CH60_1595 CH60_1595 CH60_1595 1705071 1705307 - SIS domain protein [K] COG1737 Transcriptional regulators gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1595 CH60_1596 CH60_1596 CH60_1596 1705366 1706088 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1596 CH60_1597 CH60_1597 CH60_1597 1706108 1706386 + putative transposase Orf A%2C insertion element IS100 [L] COG4584 Transposase and inactivated derivatives gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1597 CH60_1598 CH60_1598 CH60_1598 1706386 1706691 + putative transposase/IS protein [L] COG1484 DNA replication protein gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1598 CH60_1599 CH60_1599 CH60_1599 1706723 1707166 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1599 CH60_16 CH60_16 prtA prtA 18574 19908 + secreted protease A [Q] COG2931 RTX toxins and related Ca2+-binding proteins gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_16 CH60_160 CH60_160 CH60_160 173372 173677 + ribosomal S14p/S29e family protein [J] COG0199 Ribosomal protein S14 gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_160 CH60_1600 CH60_1600 CH60_1600 1707210 1707869 - SIS domain protein [K] COG1737 Transcriptional regulators gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1600 CH60_1601 CH60_1601 murQ murQ 1708077 1708964 + N-acetylmuramic acid 6-phosphate etherase [R] COG2103 Predicted sugar phosphate isomerase gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1601 CH60_1602 CH60_1602 CH60_1602 1709191 1709886 + haloacid dehalogenase-like hydrolase family protein [E] COG0560 Phosphoserine phosphatase gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1602 CH60_1603 CH60_1603 CH60_1603 1710014 1710559 + cytidine and deoxycytidylate deaminase zinc-binding region family protein [FJ] COG0590 Cytosine/adenosine deaminases gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1603 CH60_1604 CH60_1604 CH60_1604 1710668 1712128 - bacterial extracellular solute-binding s%2C 3 family protein [M] COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1604 CH60_1605 CH60_1605 purL purL 1712444 1716334 + phosphoribosylformylglycinamidine synthase FGAM_synt: phosphoribosylformylglycinamidine synthase~[F] COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase%2C synthetase domain gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1605 CH60_1606 CH60_1606 CH60_1606 1716746 1717195 - hypothetical protein conserved hypothetical protein gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1606 CH60_1607 CH60_1607 CH60_1607 1717647 1718207 - putative exported protein gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1607 CH60_1608 CH60_1608 CH60_1608 1719220 1719444 + hypothetical protein conserved hypothetical protein gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1608 CH60_1609 CH60_1609 CH60_1609 1719434 1719892 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1609 CH60_161 CH60_161 rpsH rpsH 173711 174103 + 30S ribosomal protein S8 [J] COG0096 Ribosomal protein S8 gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_161 CH60_1610 CH60_1610 CH60_1610 1720113 1721549 + HAMP domain protein [T] COG0642 Signal transduction histidine kinase gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1610 CH60_1611 CH60_1611 CH60_1611 1721553 1722620 + yfhG lipofamily protein gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1611 CH60_1612 CH60_1612 CH60_1612 1722583 1723920 + AAA domain family protein [T] COG2204 Response regulator containing CheY-like receiver%2C AAA-type ATPase%2C and DNA-binding domains gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1612 CH60_1613 CH60_1613 nadE nadE 1724080 1725702 + NAD+ synthetase nadE: NAD+ synthetase~[H] COG0171 NAD synthase gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1613 CH60_1614 CH60_1614 glnB glnB 1725717 1726055 + nitrogen regulatory protein P-II [E] COG0347 Nitrogen regulatory protein PII gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1614 CH60_1615 CH60_1615 CH60_1615 1726224 1727124 - hypothetical protein pseudogene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1615 CH60_1617 CH60_1617 CH60_1617 1727588 1728778 - globin family protein [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1617 CH60_1618 CH60_1618 CH60_1618 1729319 1730572 + beta-eliminating lyase family protein [E] COG0112 Glycine/serine hydroxymethyltransferase gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1618 CH60_1619 CH60_1619 ail ail 1731025 1731564 + attachment invasion locus protein [M] COG3637 Opacity protein and related surface antigens gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1619 CH60_162 CH60_162 rplF rplF 174118 174651 + ribosomal protein L6 L6_bact: ribosomal protein L6~[J] COG0097 Ribosomal protein L6P/L9E gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_162 CH60_1620 CH60_1620 CH60_1620 1733088 1734449 - PRD domain protein [K] COG3711 Transcriptional antiterminator gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1620 CH60_1621 CH60_1621 CH60_1621 1731934 1733091 + lacY proton/sugar symporter family protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1621 CH60_1622 CH60_1622 CH60_1622 1734600 1735265 + hypothetical protein conserved hypothetical protein~[R] COG3683 ABC-type uncharacterized transport system%2C periplasmic component gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1622 CH60_1623 CH60_1623 CH60_1623 1735256 1736278 + high-affinity nickel-transport family protein [R] COG2215 ABC-type uncharacterized transport system%2C permease component gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1623 CH60_1624 CH60_1624 suhB suhB 1736377 1737180 - inositol-1-monophosphatase [G] COG0483 Archaeal fructose-1%2C6-bisphosphatase and related enzymes of inositol monophosphatase family gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1624 CH60_1625 CH60_1625 CH60_1625 1737299 1738072 + RNA methyltransferase%2C TrmH%2C group 1 family protein rRNA_methyl_1: RNA methyltransferase%2C TrmH%2C group 1 family protein~[J] COG0565 rRNA methylase gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1625 CH60_1626 CH60_1626 iscR iscR 1738228 1738722 + iron-sulfur cluster assembly transcription factor IscR iscR: iron-sulfur cluster assembly transcription factor IscR~[K] COG1959 Predicted transcriptional regulator gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1626 CH60_1627 CH60_1627 iscS iscS 1738776 1740005 + cysteine desulfurase IscS iscS: cysteine desulfurase IscS~[E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1627 CH60_1628 CH60_1628 nifU nifU 1740036 1740422 + nifU-like protein [C] COG0822 NifU homolog involved in Fe-S cluster formation gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1628 CH60_1629 CH60_1629 iscA iscA 1740692 1741015 + iron-sulfur cluster assembly protein IscA iscA: iron-sulfur cluster assembly protein IscA~[S] COG0316 Uncharacterized conserved protein gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1629 CH60_163 CH60_163 rplR rplR 174661 175014 + ribosomal protein L18 L18_bact: ribosomal protein L18~[J] COG0256 Ribosomal protein L18 gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_163 CH60_1630 CH60_1630 hscB hscB 1741126 1741650 + Fe-S protein assembly co-chaperone HscB hscB: Fe-S protein assembly co-chaperone HscB~[O] COG1076 DnaJ-domain-containing proteins 1 gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1630 CH60_1631 CH60_1631 hscA hscA 1741893 1743845 + Fe-S protein assembly chaperone HscA hscA: Fe-S protein assembly chaperone HscA~[O] COG0443 Molecular chaperone gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1631 CH60_1632 CH60_1632 fdx fdx 1743848 1744183 + ferredoxin%2C 2Fe-2S type%2C ISC system fdx_isc: ferredoxin%2C 2Fe-2S type%2C ISC system~[C] COG0633 Ferredoxin gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1632 CH60_1633 CH60_1633 iscX iscX 1744213 1744413 + FeS assembly protein IscX iscX_yfhJ: FeS assembly protein IscX~[S] COG2975 Uncharacterized protein conserved in bacteria gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1633 CH60_1634 CH60_1634 CH60_1634 1744553 1745851 + peptidase family protein [E] COG0260 Leucyl aminopeptidase gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1634 CH60_1635 CH60_1635 CH60_1635 1745930 1746883 + hypothetical protein sseB C-terminal domain protein gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1635 CH60_1636 CH60_1636 CH60_1636 1747221 1747541 - outer membrane autotransporter barrel domain protein autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1636 CH60_1637 CH60_1637 CH60_1637 1747507 1750665 - outer membrane autotransporter barrel domain protein autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1637 CH60_1638 CH60_1638 CH60_1638 1751223 1755707 - outer membrane autotransporter barrel domain protein autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1638 CH60_1639 CH60_1639 CH60_1639 1756423 1758844 + beta/Gamma crystallin family protein%3Bexotoxin A binding family protein pseudogene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1639 CH60_164 CH60_164 rpsE rpsE 175029 175532 + ribosomal protein S5 rpsE_bact: ribosomal protein S5~[J] COG0098 Ribosomal protein S5 gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_164 CH60_1641 CH60_1641 CH60_1641 1759171 1759599 + nucleoside diphosphate kinase family protein [F] COG0105 Nucleoside diphosphate kinase gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1641 CH60_1642 CH60_1642 rlmN rlmN 1759861 1761057 + 23S rRNA (adenine(2503)-C(2))-methyltransferase rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase~[R] COG0820 Predicted Fe-S-cluster redox enzyme gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1642 CH60_1643 CH60_1643 pilF pilF 1761211 1761960 + type IV pilus biogenesis/stability protein PilW type_IV_pilW: type IV pilus biogenesis/stability protein PilW~[NU] COG3063 Tfp pilus assembly protein PilF gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1643 CH60_1644 CH60_1644 CH60_1644 1761950 1762987 + helix-turn-helix family protein [S] COG1426 Uncharacterized protein conserved in bacteria gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1644 CH60_1645 CH60_1645 ispG ispG 1763049 1764176 + 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase~[I] COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1645 CH60_1646 CH60_1646 hisS hisS 1764385 1765659 + histidine--tRNA ligase hisS: histidine--tRNA ligase~[J] COG0124 Histidyl-tRNA synthetase gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1646 CH60_1647 CH60_1647 CH60_1647 1765673 1766308 + tetratricopeptide repeat family protein [S] COG2976 Uncharacterized protein conserved in bacteria gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1647 CH60_1648 CH60_1648 yfgL yfgL 1766320 1767501 + outer membrane assembly lipoprotein YfgL assembly_YfgL: outer membrane assembly lipoprotein YfgL~[S] COG1520 FOG: WD40-like repeat gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1648 CH60_1649 CH60_1649 engA engA 1767649 1769136 + ribosome-associated GTPase EngA GTPase_EngA: ribosome-associated GTPase EngA~[R] COG1160 Predicted GTPases gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1649 CH60_165 CH60_165 rpmD rpmD 175535 175714 + ribosomal protein L30 rpmD_bact: ribosomal protein L30~[J] COG1841 Ribosomal protein L30/L7E gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_165 CH60_1650 CH60_1650 CH60_1650 1769483 1770439 + membrane transport family protein [R] COG0679 Predicted permeases gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1650 CH60_1651 CH60_1651 CH60_1651 1770488 1770712 + zinc-ribbons family protein gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1651 CH60_1652 CH60_1652 xseA xseA 1770813 1772192 - exodeoxyribonuclease VII%2C large subunit xseA: exodeoxyribonuclease VII%2C large subunit~[L] COG1570 Exonuclease VII%2C large subunit gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1652 CH60_1653 CH60_1653 guaB guaB 1772362 1773825 + inosine-5'-monophosphate dehydrogenase IMP_dehydrog: inosine-5'-monophosphate dehydrogenase~[F] COG0516 IMP dehydrogenase/GMP reductase gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1653 CH60_1654 CH60_1654 guaA guaA 1774005 1775582 + GMP synthase guaA_Nterm: GMP synthase (glutamine-hydrolyzing)%2C N-terminal domain~[F] COG0519 GMP synthase%2C PP-ATPase domain/subunit gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1654 CH60_1655 CH60_1655 CH60_1655 1775957 1776415 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1655 CH60_1656 CH60_1656 CH60_1656 1776575 1777054 - type VI secretion system effector%2C Hcp1 family protein VI_effect_Hcp1: type VI secretion system effector%2C Hcp1 family protein~[S] COG3157 Hemolysin-coregulated protein (uncharacterized) gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1656 CH60_1657 CH60_1657 CH60_1657 1777340 1777528 + putative membrane protein gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1657 CH60_1658 CH60_1658 CH60_1658 1777540 1777935 - hypothetical protein conserved hypothetical protein gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1658 CH60_1659 CH60_1659 CH60_1659 1777997 1778392 - hypothetical protein conserved hypothetical protein gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1659 CH60_166 CH60_166 rplO rplO 175718 176152 + ribosomal protein L15 rplO_bact: ribosomal protein L15~[J] COG0200 Ribosomal protein L15 gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_166 CH60_1660 CH60_1660 CH60_1660 1778456 1778851 - hypothetical protein conserved hypothetical protein gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1660 CH60_1661 CH60_1661 CH60_1661 1778848 1779483 - putative membrane protein gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1661 CH60_1662 CH60_1662 CH60_1662 1779555 1780763 + transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1662 CH60_1663 CH60_1663 yniC yniC 1781014 1781679 - phosphatase YniC [R] COG0637 Predicted phosphatase/phosphohexomutase gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1663 CH60_1664 CH60_1664 CH60_1664 1782090 1782644 + yniB-like family protein gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1664 CH60_1665 CH60_1665 CH60_1665 1782773 1783648 - fructosamine kinase family protein [G] COG3001 Fructosamine-3-kinase gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1665 CH60_1666 CH60_1666 CH60_1666 1783953 1784846 - ABC 3 transport family protein [P] COG1108 ABC-type Mn2+/Zn2+ transport systems%2C permease components gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1666 CH60_1667 CH60_1667 CH60_1667 1784843 1785727 - ABC 3 transport family protein [P] COG1108 ABC-type Mn2+/Zn2+ transport systems%2C permease components gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1667 CH60_1668 CH60_1668 CH60_1668 1785727 1786617 - ABC transporter family protein [P] COG1121 ABC-type Mn/Zn transport systems%2C ATPase component gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1668 CH60_1669 CH60_1669 CH60_1669 1786614 1787582 - periplasmic solute binding family protein [P] COG0803 ABC-type metal ion transport system%2C periplasmic component/surface adhesin gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1669 CH60_167 CH60_167 secY secY 176160 177491 + preprotein translocase%2C SecY subunit 3a0501s007: preprotein translocase%2C SecY subunit~[U] COG0201 Preprotein translocase subunit SecY gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_167 CH60_1670 CH60_1670 CH60_1670 1787794 1788456 + transglycosylase SLT domain protein [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1670 CH60_1671 CH60_1671 CH60_1671 1788578 1789261 - marC integral membrane family protein [U] COG2095 Multiple antibiotic transporter gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1671 CH60_1672 CH60_1672 CH60_1672 1789580 1789831 + hypothetical protein conserved hypothetical protein gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1672 CH60_1673 CH60_1673 CH60_1673 1790590 1790802 - KTSC domain protein gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1673 CH60_1674 CH60_1674 thrS thrS 1791193 1793121 + threonine--tRNA ligase thrS: threonine--tRNA ligase~[J] COG0441 Threonyl-tRNA synthetase gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1674 CH60_1675 CH60_1675 infC infC 1793326 1793676 + translation initiation factor IF-3 infC: translation initiation factor IF-3~[J] COG0290 Translation initiation factor 3 (IF-3) gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1675 CH60_1676 CH60_1676 rpmI rpmI 1793773 1793970 + ribosomal protein L35 rpmI_bact: ribosomal protein L35~[J] COG0291 Ribosomal protein L35 gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1676 CH60_1677 CH60_1677 rplT rplT 1794008 1794364 + ribosomal protein L20 rplT_bact: ribosomal protein L20~[J] COG0292 Ribosomal protein L20 gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1677 CH60_1678 CH60_1678 pheS pheS 1794863 1795846 + phenylalanine--tRNA ligase%2C alpha subunit pheS: phenylalanine--tRNA ligase%2C alpha subunit~[J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1678 CH60_1679 CH60_1679 pheT pheT 1795860 1798247 + phenylalanine--tRNA ligase%2C beta subunit pheT_bact: phenylalanine--tRNA ligase%2C beta subunit~[J] COG0072 Phenylalanyl-tRNA synthetase beta subunit gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1679 CH60_168 CH60_168 rpmJ rpmJ 177525 177641 + ribosomal protein L36 rpmJ_bact: ribosomal protein L36~[J] COG0257 Ribosomal protein L36 gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_168 CH60_1680 CH60_1680 ihfA ihfA 1798252 1798548 + integration host factor%2C alpha subunit himA: integration host factor%2C alpha subunit~[L] COG0776 Bacterial nucleoid DNA-binding protein gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1680 CH60_1681 CH60_1681 CH60_1681 1798882 1799340 + hypothetical protein conserved hypothetical protein gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1681 CH60_1682 CH60_1682 CH60_1682 1799567 1800574 + fecCD transport family protein [H] COG4139 ABC-type cobalamin transport system%2C permease component gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1682 CH60_1683 CH60_1683 CH60_1683 1800644 1801198 + glutathione peroxidase family protein [O] COG0386 Glutathione peroxidase gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1683 CH60_1684 CH60_1684 CH60_1684 1801223 1801981 + ABC transporter family protein [H] COG4138 ABC-type cobalamin transport system%2C ATPase component gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1684 CH60_1685 CH60_1685 CH60_1685 1802331 1803485 + beta-eliminating lyase family protein [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1685 CH60_1686 CH60_1686 arnC arnC 1803472 1804455 + undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [M] COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1686 CH60_1687 CH60_1687 CH60_1687 1804452 1806455 + 3-beta hydroxysteroid dehydrogenase/isomerase family protein [MG] COG0451 Nucleoside-diphosphate-sugar epimerases gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1687 CH60_1688 CH60_1688 CH60_1688 1806452 1807357 + polysaccharide deacetylase family protein [G] COG0726 Predicted xylanase/chitin deacetylase gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1688 CH60_1689 CH60_1689 CH60_1689 1807354 1809018 + dolichyl-phosphate-mannose-mannosyltransferase family protein [M] COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1689 CH60_169 CH60_169 rpsM rpsM 177789 178145 + 30S ribosomal protein S13 bact_S13: 30S ribosomal protein S13~[J] COG0099 Ribosomal protein S13 gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_169 CH60_1690 CH60_1690 CH60_1690 1809015 1809359 + small Multidrug Resistance family protein [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1690 CH60_1691 CH60_1691 CH60_1691 1809356 1809742 + eamA-like transporter family protein [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1691 CH60_1692 CH60_1692 CH60_1692 1810055 1810486 + nlpC/P60 family protein [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins) gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1692 CH60_1693 CH60_1693 lplA lplA 1810611 1811627 + lipoate-protein ligase A [H] COG0095 Lipoate-protein ligase A gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1693 CH60_1694 CH60_1694 CH60_1694 1811691 1812401 + hypothetical protein conserved hypothetical protein~[S] COG0397 Uncharacterized conserved protein gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1694 CH60_1695 CH60_1695 CH60_1695 1812426 1813142 + hypothetical protein conserved hypothetical protein~[S] COG0397 Uncharacterized conserved protein gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1695 CH60_1696 CH60_1696 CH60_1696 1813311 1814357 - 3-deoxy-7-phosphoheptulonate synthase aroFGH: 3-deoxy-7-phosphoheptulonate synthase~[E] COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1696 CH60_1697 CH60_1697 CH60_1697 1814514 1815335 - putative phosphotransferase ydiA [S] COG1806 Uncharacterized protein conserved in bacteria gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1697 CH60_1698 CH60_1698 ppsA ppsA 1815672 1818056 + phosphoenolpyruvate synthase PEP_synth: phosphoenolpyruvate synthase~[G] COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1698 CH60_1699 CH60_1699 CH60_1699 1818656 1819759 - hypothetical protein conserved hypothetical protein~[R] COG0628 Predicted permease gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1699 CH60_17 CH60_17 CH60_17 19973 20743 - SAM-dependent methyltransferase family protein [QR] COG0500 SAM-dependent methyltransferases gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_17 CH60_170 CH60_170 rpsK rpsK 178162 178551 + 30S ribosomal protein S11 bact_S11: 30S ribosomal protein S11~[J] COG0100 Ribosomal protein S11 gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_170 CH60_1700 CH60_1700 CH60_1700 1820380 1823436 + hypothetical protein FAD linked oxidase%2C C-terminal domain protein~[C] COG0277 FAD/FMN-containing dehydrogenases gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1700 CH60_1701 CH60_1701 CH60_1701 1823558 1823974 + hypothetical protein conserved hypothetical protein~[Q] COG2050 Uncharacterized protein%2C possibly involved in aromatic compounds catabolism gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1701 CH60_1702 CH60_1702 CH60_1702 1824590 1824961 + iron-sulfur cluster assembly accessory family protein [S] COG0316 Uncharacterized conserved protein gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1702 CH60_1703 CH60_1703 sufB sufB 1824976 1826487 + FeS assembly protein SufB sufB: FeS assembly protein SufB~[O] COG0719 ABC-type transport system involved in Fe-S cluster assembly%2C permease component gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1703 CH60_1704 CH60_1704 sufC sufC 1826673 1827419 + FeS assembly ATPase SufC sufC: FeS assembly ATPase SufC~[O] COG0396 ABC-type transport system involved in Fe-S cluster assembly%2C ATPase component gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1704 CH60_1705 CH60_1705 sufD sufD 1827394 1828719 + FeS assembly protein SufD sufD: FeS assembly protein SufD~[O] COG0719 ABC-type transport system involved in Fe-S cluster assembly%2C permease component gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1705 CH60_1706 CH60_1706 sufS sufS 1828716 1829936 + cysteine desulfurase%2C SufS family protein sufS: cysteine desulfurase%2C SufS family protein~[E] COG0520 Selenocysteine lyase gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1706 CH60_1707 CH60_1707 sufE sufE 1830025 1830447 + cysteine desulfuration protein sufE [R] COG2166 SufE protein probably involved in Fe-S center assembly gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1707 CH60_1708 CH60_1708 CH60_1708 1830718 1831737 + L%2CD-transpeptidase catalytic domain protein [S] COG1376 Uncharacterized protein conserved in bacteria gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1708 CH60_1709 CH60_1709 CH60_1709 1831781 1832560 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1709 CH60_171 CH60_171 rpsD rpsD 178582 179202 + ribosomal protein S4 rpsD_bact: ribosomal protein S4~[J] COG0522 Ribosomal protein S4 and related proteins gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_171 CH60_1710 CH60_1710 CH60_1710 1832560 1832838 - putative transposase Orf A%2C insertion element IS100 [L] COG4584 Transposase and inactivated derivatives gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1710 CH60_1711 CH60_1711 CH60_1711 1832895 1833581 - helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1711 CH60_1712 CH60_1712 CH60_1712 1834163 1834621 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1712 CH60_1713 CH60_1713 lpp lpp 1834812 1835048 - major outer membrane lipoprotein Lpp [M] COG4238 Murein lipoprotein gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1713 CH60_1714 CH60_1714 pyk pyk 1835369 1836781 - pyruvate kinase pyruv_kin: pyruvate kinase~[G] COG0469 Pyruvate kinase gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1714 CH60_1715 CH60_1715 CH60_1715 1837357 1837433 - tRNA-Val tRNA gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1715 CH60_1716 CH60_1716 CH60_1716 1837493 1837569 - tRNA-Val tRNA gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1716 CH60_1717 CH60_1717 CH60_1717 1837812 1839185 - MATE efflux family protein matE: MATE efflux family protein~[V] COG0534 Na+-driven multidrug efflux pump gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1717 CH60_1718 CH60_1718 ribE ribE 1839434 1840090 + riboflavin synthase%2C alpha subunit ribE: riboflavin synthase%2C alpha subunit~[H] COG0307 Riboflavin synthase alpha chain gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1718 CH60_1719 CH60_1719 cfa cfa 1840141 1841292 - cyclopropane-fatty-acyl-phospholipid synthase [M] COG2230 Cyclopropane fatty acid synthase and related methyltransferases gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1719 CH60_172 CH60_172 rpoA rpoA 179228 180217 + DNA-directed RNA polymerase%2C alpha subunit rpoA: DNA-directed RNA polymerase%2C alpha subunit~[K] COG0202 DNA-directed RNA polymerase%2C alpha subunit/40 kD subunit gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_172 CH60_1720 CH60_1720 CH60_1720 1841772 1842974 - drug resistance transporter%2C Bcr/CflA subfamily protein efflux_Bcr_CflA: drug resistance transporter%2C Bcr/CflA subfamily protein~[GEPR] COG0477 Permeases of the major facilitator superfamily gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1720 CH60_1721 CH60_1721 CH60_1721 1843264 1844196 + bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1721 CH60_1722 CH60_1722 CH60_1722 1844285 1845310 - bacterial regulatory s%2C lacI family protein [K] COG1609 Transcriptional regulators gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1722 CH60_1723 CH60_1723 CH60_1723 1845644 1845733 + putative membrane protein gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1723 CH60_1724 CH60_1724 sodB sodB 1845837 1846415 - superoxide dismutase Fe [P] COG0605 Superoxide dismutase gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1724 CH60_1725 CH60_1725 CH60_1725 1846793 1847644 - nlpC/P60 family protein [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins) gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1725 CH60_1726 CH60_1726 CH60_1726 1847763 1847984 + hypothetical protein conserved hypothetical protein gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1726 CH60_1727 CH60_1727 grxD grxD 1848084 1848434 + monothiol glutaredoxin%2C Grx4 family [O] COG0278 Glutaredoxin-related protein gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1727 CH60_1728 CH60_1728 rnt rnt 1848743 1849390 - ribonuclease T RNaseT: ribonuclease T~[L] COG0847 DNA polymerase III%2C epsilon subunit and related 3'-5' exonucleases gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1728 CH60_1729 CH60_1729 gloA gloA 1849502 1849909 - lactoylglutathione lyase glyox_I: lactoylglutathione lyase~[E] COG0346 Lactoylglutathione lyase and related lyases gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1729 CH60_173 CH60_173 rplQ rplQ 180258 180647 + ribosomal protein L17 L17: ribosomal protein L17~[J] COG0203 Ribosomal protein L17 gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_173 CH60_1730 CH60_1730 CH60_1730 1850182 1853136 + RHS repeat-associated core domain protein rhs_assc_core: RHS repeat-associated core domain protein~[M] COG3209 Rhs family protein gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1730 CH60_1731 CH60_1731 CH60_1731 1853357 1854454 - flavin oxidoreductase / NADH oxidase family protein NADH:flavin oxidoreductase / NADH oxidase family protein~[C] COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme family gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1731 CH60_1732 CH60_1732 nemR nemR 1854542 1855141 - HTH-type transcriptional repressor nemR [K] COG1309 Transcriptional regulator gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1732 CH60_1733 CH60_1733 CH60_1733 1855364 1857001 - hypothetical protein conserved hypothetical protein~[R] COG2194 Predicted membrane-associated%2C metal-dependent hydrolase gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1733 CH60_1734 CH60_1734 CH60_1734 1857175 1857414 + hypothetical protein conserved hypothetical protein~[R] COG3313 Predicted Fe-S protein gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1734 CH60_1735 CH60_1735 CH60_1735 1857546 1858442 + aldo/keto reductase family protein [R] COG4989 Predicted oxidoreductase gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1735 CH60_1736 CH60_1736 CH60_1736 1859240 1859596 + winged helix DNA-binding domain protein [K] COG1846 Transcriptional regulators gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1736 CH60_1737 CH60_1737 slyB slyB 1859815 1860282 - outer membrane lipoprotein slyB [M] COG3133 Outer membrane lipoprotein gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1737 CH60_1738 CH60_1738 CH60_1738 1860838 1861950 + hypothetical protein conserved hypothetical protein~[O] COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1738 CH60_1739 CH60_1739 CH60_1739 1862008 1862322 + membrane-bound lysozyme-inhibitor of c-type lysozyme family protein [R] COG3895 Predicted periplasmic protein gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1739 CH60_174 CH60_174 zntR zntR 181094 181519 + Zn(II)-responsive transcriptional regulator zntR: Zn(II)-responsive transcriptional regulator~[K] COG0789 Predicted transcriptional regulators gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_174 CH60_1740 CH60_1740 pdxH pdxH 1862413 1863066 + pyridoxamine 5'-phosphate oxidase pdxH: pyridoxamine 5'-phosphate oxidase~[H] COG0259 Pyridoxamine-phosphate oxidase gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1740 CH60_1741 CH60_1741 tyrS tyrS 1863248 1864522 + tyrosine--tRNA ligase tyrS: tyrosine--tRNA ligase~[J] COG0162 Tyrosyl-tRNA synthetase gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1741 CH60_1742 CH60_1742 CH60_1742 1864677 1865537 + pyridoxal kinase pyridox_kin: pyridoxal kinase~[H] COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1742 CH60_1743 CH60_1743 gstB gstB 1865597 1866202 - glutathione S-transferase GST-6.0 [O] COG0625 Glutathione S-transferase gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1743 CH60_1744 CH60_1744 CH60_1744 1866447 1866710 - hypothetical protein conserved hypothetical protein gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1744 CH60_1745 CH60_1745 CH60_1745 1866956 1867546 - yip1 domain protein gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1745 CH60_1746 CH60_1746 CH60_1746 1867801 1869306 - amino acid/peptide transporter family protein yjdL_sub1_fam: amino acid/peptide transporter family protein~[E] COG3104 Dipeptide/tripeptide permease gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1746 CH60_1747 CH60_1747 CH60_1747 1869489 1869578 + putative membrane protein gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1747 CH60_1748 CH60_1748 CH60_1748 1869949 1871229 - hypothetical protein conserved hypothetical protein~[S] COG4950 Uncharacterized protein conserved in bacteria gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1748 CH60_1749 CH60_1749 sapF sapF 1871619 1872434 - peptide transport system ATP-binding protein SapF [V] COG4167 ABC-type antimicrobial peptide transport system%2C ATPase component gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1749 CH60_175 CH60_175 CH60_175 181607 181807 + hypothetical protein domain of unknown function family protein~[S] COG3036 Uncharacterized protein conserved in bacteria gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_175 CH60_1750 CH60_1750 CH60_1750 1872434 1873426 - hypothetical protein oligo_HPY: oligopeptide/dipeptide ABC transporter%2C ATP-binding%2C C-terminal domain protein~[V] COG4170 ABC-type antimicrobial peptide transport system%2C ATPase component gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1750 CH60_1751 CH60_1751 sapC sapC 1873426 1874316 - peptide transport system permease protein sapC [V] COG4171 ABC-type antimicrobial peptide transport system%2C permease component gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1751 CH60_1752 CH60_1752 sapB sapB 1874303 1875268 - peptide transport system permease protein sapB [V] COG4168 ABC-type antimicrobial peptide transport system%2C permease component gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1752 CH60_1753 CH60_1753 CH60_1753 1875265 1876911 - bacterial extracellular solute-binding s%2C 5 Middle family protein [E] COG4166 ABC-type oligopeptide transport system%2C periplasmic component gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1753 CH60_1754 CH60_1754 CH60_1754 1877583 1878041 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1754 CH60_1755 CH60_1755 tyrR tyrR 1878188 1879765 - transcriptional regulatory protein tyrR [KE] COG3283 Transcriptional regulator of aromatic amino acids metabolism gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1755 CH60_1756 CH60_1756 CH60_1756 1880101 1880547 + hypothetical protein conserved hypothetical protein~[S] COG5642 Uncharacterized conserved protein gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1756 CH60_1757 CH60_1757 CH60_1757 1880643 1881101 + RES domain protein [S] COG5654 Uncharacterized conserved protein gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1757 CH60_1758 CH60_1758 CH60_1758 1881111 1882172 - hypothetical protein conserved hypothetical protein~[S] COG3768 Predicted membrane protein gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1758 CH60_1759 CH60_1759 CH60_1759 1882169 1883566 - hypothetical protein conserved hypothetical protein~[R] COG3106 Predicted ATPase gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1759 CH60_176 CH60_176 mscL mscL 181917 182321 - large conductance mechanosensitive channel protein mscL: large conductance mechanosensitive channel protein~[M] COG1970 Large-conductance mechanosensitive channel gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_176 CH60_1760 CH60_1760 CH60_1760 1883547 1883789 - phage shock PspD family protein gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1760 CH60_1761 CH60_1761 pspC pspC 1883874 1884233 - phage shock protein C phageshock_pspC: phage shock protein C~[KT] COG1983 Putative stress-responsive transcriptional regulator gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1761 CH60_1762 CH60_1762 pspB pspB 1884233 1884460 - phage shock protein B phageshock_pspB: phage shock protein B gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1762 CH60_1763 CH60_1763 pspA pspA 1884622 1885287 - phage shock protein A phageshock_pspA: phage shock protein A~[KT] COG1842 Phage shock protein A (IM30)%2C suppresses sigma54-dependent transcription gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1763 CH60_1764 CH60_1764 pspF pspF 1885532 1886560 + psp operon transcriptional activator phageshock_pspF: psp operon transcriptional activator~[KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1764 CH60_1765 CH60_1765 CH60_1765 1886725 1887183 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1765 CH60_1766 CH60_1766 tpx tpx 1887436 1887939 - thiol peroxidase [O] COG2077 Peroxiredoxin gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1766 CH60_1767 CH60_1767 CH60_1767 1888102 1889076 + hypothetical protein mandelate racemase / muconate lactonizing enzyme%2C N-terminal domain protein~[MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1767 CH60_1768 CH60_1768 CH60_1768 1889118 1889825 - zinc carboxypeptidase family protein [E] COG2866 Predicted carboxypeptidase gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1768 CH60_1769 CH60_1769 CH60_1769 1890266 1891882 + bacterial extracellular solute-binding s%2C 5 Middle family protein [E] COG4166 ABC-type oligopeptide transport system%2C periplasmic component gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1769 CH60_177 CH60_177 CH60_177 182469 183845 - ketopantoate reductase PanE/ApbA family protein [P] COG0569 K+ transport systems%2C NAD-binding component gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_177 CH60_1770 CH60_1770 CH60_1770 1892125 1893108 + corA-like Mg2+ transporter family protein [P] COG0598 Mg2+ and Co2+ transporters gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1770 CH60_1771 CH60_1771 CH60_1771 1893482 1894321 - merR regulatory family protein [K] COG0789 Predicted transcriptional regulators gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1771 CH60_1772 CH60_1772 CH60_1772 1894633 1895637 - alpha/beta hydrolase fold family protein [I] COG0657 Esterase/lipase gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1772 CH60_1773 CH60_1773 CH60_1773 1894525 1894734 + hypothetical protein conserved hypothetical protein gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1773 CH60_1774 CH60_1774 CH60_1774 1895908 1896849 - PP-loop family protein [D] COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1774 CH60_1775 CH60_1775 nifJ nifJ 1897124 1900657 - ferredoxin (flavodoxin) oxidoreductase pyruvate:ferredoxin (flavodoxin) oxidoreductase~pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase~[C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases%2C gamma subunit gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1775 CH60_1776 CH60_1776 CH60_1776 1901136 1901468 + small Multidrug Resistance family protein [P] COG2076 Membrane transporters of cations and cationic drugs gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1776 CH60_1777 CH60_1777 CH60_1777 1901528 1902187 - mgtC family protein [S] COG1285 Uncharacterized membrane protein gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1777 CH60_1778 CH60_1778 CH60_1778 1902472 1902813 + hypothetical protein conserved hypothetical protein~[R] COG3042 Putative hemolysin gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1778 CH60_1779 CH60_1779 hslJ hslJ 1902871 1903323 - heat shock protein hslJ [O] COG3187 Heat shock protein gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1779 CH60_178 CH60_178 rsmB rsmB 183901 185190 - 16S rRNA (cytosine(967)-C(5))-methyltransferase rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase~[J] COG0144 tRNA and rRNA cytosine-C5-methylases gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_178 CH60_1780 CH60_1780 CH60_1780 1903393 1904385 - D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain protein [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1780 CH60_1781 CH60_1781 CH60_1781 1904651 1907347 + dicarboxylate transport family protein gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1781 CH60_1782 CH60_1782 CH60_1782 1907344 1907538 + ynbE-like lipofamily protein gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1782 CH60_1783 CH60_1783 CH60_1783 1907614 1907919 + hypothetical protein conserved hypothetical protein~[S] COG3784 Uncharacterized protein conserved in bacteria gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1783 CH60_1784 CH60_1784 CH60_1784 1908120 1909481 - mannitol dehydrogenase Rossmann domain protein [G] COG0246 Mannitol-1-phosphate/altronate dehydrogenases gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1784 CH60_1785 CH60_1785 CH60_1785 1909721 1910677 + putative sugar-binding domain protein [K] COG2390 Transcriptional regulator%2C contains sigma factor-related N-terminal domain gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1785 CH60_1786 CH60_1786 CH60_1786 1910798 1911403 - NADPH-dependent FMN reductase family protein [I] COG1182 Acyl carrier protein phosphodiesterase gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1786 CH60_1787 CH60_1787 hrpA hrpA 1911804 1915691 + RNA helicase HrpA DEAH_box_HrpA: RNA helicase HrpA~[L] COG1643 HrpA-like helicases gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1787 CH60_1788 CH60_1788 CH60_1788 1916030 1916359 + hypothetical protein conserved hypothetical protein~[S] COG4679 Phage-related protein gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1788 CH60_1789 CH60_1789 CH60_1789 1916356 1916679 + helix-turn-helix family protein [K] COG1396 Predicted transcriptional regulators gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1789 CH60_179 CH60_179 fmt fmt 185284 186231 - methionyl-tRNA formyltransferase fmt: methionyl-tRNA formyltransferase~[J] COG0223 Methionyl-tRNA formyltransferase gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_179 CH60_1790 CH60_1790 CH60_1790 1916735 1917571 - trypsin family protein [E] COG3591 V8-like Glu-specific endopeptidase gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1790 CH60_1791 CH60_1791 CH60_1791 1917905 1918213 - putative acid shock protein 1 gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1791 CH60_1792 CH60_1792 CH60_1792 1918817 1919371 + prokaryotic cytochrome b561 family protein [C] COG3038 Cytochrome B561 gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1792 CH60_1793 CH60_1793 CH60_1793 1919397 1919975 + yceI-like domain protein [S] COG2353 Uncharacterized conserved protein gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1793 CH60_1794 CH60_1794 CH60_1794 1920617 1920907 - hypothetical protein conserved hypothetical protein gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1794 CH60_1795 CH60_1795 CH60_1795 1920976 1923600 - RHS repeat-associated core domain protein rhs_assc_core: RHS repeat-associated core domain protein~[M] COG3209 Rhs family protein gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1795 CH60_1796 CH60_1796 CH60_1796 1924570 1925028 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1796 CH60_1797 CH60_1797 CH60_1797 1925150 1926649 - carboxypeptidase Taq (M32) metallopeptidase family protein [E] COG2317 Zn-dependent carboxypeptidase gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1797 CH60_1798 CH60_1798 CH60_1798 1926743 1927999 - HAMP domain protein [T] COG0642 Signal transduction histidine kinase gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1798 CH60_1799 CH60_1799 CH60_1799 1928048 1928794 - hypothetical protein transcriptional regulatory%2C C terminal family protein~[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1799 CH60_18 CH60_18 CH60_18 20747 22789 - peptidase M3 family protein [E] COG0339 Zn-dependent oligopeptidases gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_18 CH60_180 CH60_180 def def 186256 186768 - peptide deformylase pept_deformyl: peptide deformylase~[J] COG0242 N-formylmethionyl-tRNA deformylase gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_180 CH60_1800 CH60_1800 CH60_1800 1929091 1929507 + hypothetical protein conserved hypothetical protein gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1800 CH60_1801 CH60_1801 CH60_1801 1929531 1930922 - putative arginine/ornithine antiporter [E] COG0531 Amino acid transporters gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1801 CH60_1802 CH60_1802 ydgH ydgH 1931192 1932145 - protein ydgH gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1802 CH60_1803 CH60_1803 pntA pntA 1932675 1934201 + NAD(P)(+) transhydrogenase (AB-specific)%2C alpha subunit pntA: NAD(P)(+) transhydrogenase (AB-specific)%2C alpha subunit~[C] COG3288 NAD/NADP transhydrogenase alpha subunit gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1803 CH60_1804 CH60_1804 pntB pntB 1934274 1935668 + NAD(P) transhydrogenase subunit beta [C] COG1282 NAD/NADP transhydrogenase beta subunit gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1804 CH60_1805 CH60_1805 CH60_1805 1935943 1936899 - universal stress family protein [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1805 CH60_1806 CH60_1806 fnr fnr 1937034 1937786 - fumarate and nitrate reduction regulatory protein [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1806 CH60_1807 CH60_1807 CH60_1807 1937859 1938377 - methylated-DNA--[]-cysteine S-methyltransferase family protein ogt: methylated-DNA--[]-cysteine S-methyltransferase family protein~[L] COG0350 Methylated DNA-protein cysteine methyltransferase gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1807 CH60_1808 CH60_1808 CH60_1808 1938618 1940063 + alkaline phosphatase family protein [P] COG1785 Alkaline phosphatase gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1808 CH60_1809 CH60_1809 CH60_1809 1940609 1943006 + terB-N family protein%3BterB-C domain protein pseudogene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1809 CH60_181 CH60_181 dprA dprA 186903 188024 + DNA protecting protein DprA dprA: DNA protecting protein DprA~[LU] COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_181 CH60_1811 CH60_1811 CH60_1811 1943137 1943811 + noncanonical pyrimidine nucleotidase%2C YjjG family yjjG/YfnB: noncanonical pyrimidine nucleotidase%2C YjjG family~[R] COG1011 Predicted hydrolase (HAD superfamily) gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1811 CH60_1812 CH60_1812 ilvN ilvN 1943878 1944225 - acetolactate synthase [E] COG0440 Acetolactate synthase%2C small (regulatory) subunit gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1812 CH60_1813 CH60_1813 ilvB ilvB 1944227 1945894 - acetolactate synthase%2C large subunit%2C biosynthetic type acolac_lg: acetolactate synthase%2C large subunit%2C biosynthetic type~[EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase%2C pyruvate dehydrogenase (cytochrome)%2C glyoxylate carboligase%2C phosphonopyruvate decarboxylase] gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1813 CH60_1814 CH60_1814 CH60_1814 1946475 1947269 + hypothetical protein conserved hypothetical protein gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1814 CH60_1815 CH60_1815 CH60_1815 1947438 1949978 - bacterial virulence factor family protein [S] COG4458 Uncharacterized protein conserved in bacteria%2C putative virulence factor gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1815 CH60_1816 CH60_1816 CH60_1816 1949975 1953046 - virulence factor SrfB family protein [S] COG4457 Uncharacterized protein conserved in bacteria%2C putative virulence factor gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1816 CH60_1817 CH60_1817 CH60_1817 1953051 1954484 - putative virulence effector protein SrfA gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1817 CH60_1818 CH60_1818 amn amn 1954690 1956180 + AMP nucleosidase AMP-nucleosdse: AMP nucleosidase~[F] COG0775 Nucleoside phosphorylase gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1818 CH60_1819 CH60_1819 CH60_1819 1956605 1957423 - ABC transporter family protein [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system%2C ATPase component gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1819 CH60_182 CH60_182 CH60_182 187996 188469 + hypothetical protein conserved hypothetical protein~[S] COG2922 Uncharacterized protein conserved in bacteria gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_182 CH60_1820 CH60_1820 CH60_1820 1957433 1958212 - binding--dependent transport system inner membrane component family protein [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system%2C permease component gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1820 CH60_1821 CH60_1821 CH60_1821 1958258 1959289 - bacterial extracellular solute-binding s%2C 3 family protein [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems%2C periplasmic components gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1821 CH60_1822 CH60_1822 CH60_1822 1959728 1960078 + periplasmic binding domain protein [G] COG1879 ABC-type sugar transport system%2C periplasmic component gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1822 CH60_1823 CH60_1823 CH60_1823 1960222 1960692 + hypothetical protein conserved hypothetical protein gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1823 CH60_1824 CH60_1824 CH60_1824 1960756 1961772 + bacterial regulatory s%2C lacI family protein [K] COG1609 Transcriptional regulators gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1824 CH60_1825 CH60_1825 CH60_1825 1962372 1963652 + voltage gated chloride channel family protein [P] COG0038 Chloride channel protein EriC gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1825 CH60_1826 CH60_1826 bioD bioD 1963904 1964572 - dethiobiotin synthase bioD: dethiobiotin synthase~[H] COG0132 Dethiobiotin synthetase gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1826 CH60_1827 CH60_1827 CH60_1827 1964639 1964734 + hypothetical protein gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1827 CH60_1828 CH60_1828 CH60_1828 1964796 1966013 - ROK family protein [KG] COG1940 Transcriptional regulator/sugar kinase gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1828 CH60_1829 CH60_1829 CH60_1829 1966227 1967105 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1829 CH60_183 CH60_183 CH60_183 188510 189049 + topoisomerase DNA binding C4 zinc finger family protein [L] COG0551 Zn-finger domain associated with topoisomerase type I gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_183 CH60_1830 CH60_1830 CH60_1830 1967318 1968436 + sugar (and other) transporter family protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1830 CH60_1831 CH60_1831 tus tus 1968821 1969756 + DNA replication rep_term_tus: DNA replication terminus site-binding protein gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1831 CH60_1832 CH60_1832 fumC fumC 1969836 1971233 - fumarate hydratase%2C class II fumC_II: fumarate hydratase%2C class II~[C] COG0114 Fumarase gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1832 CH60_1833 CH60_1833 manA manA 1971613 1972692 + mannose-6-phosphate isomerase%2C class I manA: mannose-6-phosphate isomerase%2C class I~[G] COG1482 Phosphomannose isomerase gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1833 CH60_1834 CH60_1834 CH60_1834 1972932 1974476 + hypothetical protein conserved hypothetical protein~[S] COG5339 Uncharacterized protein conserved in bacteria gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1834 CH60_1835 CH60_1835 CH60_1835 1974525 1975124 - hypothetical protein conserved hypothetical protein gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1835 CH60_1836 CH60_1836 CH60_1836 1975330 1976358 - hypothetical protein conserved hypothetical protein~[R] COG0385 Predicted Na+-dependent transporter gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1836 CH60_1837 CH60_1837 CH60_1837 1976552 1977601 - putative oxidoreductase [R] COG0673 Predicted dehydrogenases and related proteins gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1837 CH60_1838 CH60_1838 CH60_1838 1977880 1978662 - helix-turn-helix domain protein [K] COG2207 AraC-type DNA-binding domain-containing proteins gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1838 CH60_1839 CH60_1839 CH60_1839 1978883 1979932 - branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1839 CH60_184 CH60_184 CH60_184 189051 189623 + telomere recombination family protein [J] COG0009 Putative translation factor (SUA5) gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_184 CH60_1840 CH60_1840 CH60_1840 1979950 1981521 - ABC transporter family protein [G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1840 CH60_1841 CH60_1841 CH60_1841 1981619 1982602 - periplasmic binding domain protein [G] COG1879 ABC-type sugar transport system%2C periplasmic component gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1841 CH60_1842 CH60_1842 araB araB 1983010 1984713 + ribulokinase L-ribulokinase: ribulokinase~[C] COG1069 Ribulose kinase gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1842 CH60_1843 CH60_1843 CH60_1843 1984797 1986299 + L-arabinose isomerase family protein [G] COG2160 L-arabinose isomerase gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1843 CH60_1844 CH60_1844 CH60_1844 1986299 1986433 + hypothetical protein conserved hypothetical protein gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1844 CH60_1845 CH60_1845 CH60_1845 1986489 1988627 - type I secretion system ATPase family protein type_I_sec_HlyB: type I secretion system ATPase family protein~[V] COG2274 ABC-type bacteriocin/lantibiotic exporters%2C contain an N-terminal double-glycine peptidase domain gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1845 CH60_1846 CH60_1846 CH60_1846 1988629 1988997 - hlyD secretion family protein [M] COG0845 Membrane-fusion protein gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1846 CH60_1847 CH60_1847 CH60_1847 1988997 1989998 - hlyD secretion family protein [M] COG0845 Membrane-fusion protein gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1847 CH60_1848 CH60_1848 CH60_1848 1990297 1992081 - ABC transporter family protein [V] COG2274 ABC-type bacteriocin/lantibiotic exporters%2C contain an N-terminal double-glycine peptidase domain gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1848 CH60_1849 CH60_1849 CH60_1849 1992556 1992999 + hypothetical protein conserved hypothetical protein gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1849 CH60_185 CH60_185 aroE aroE 189632 190453 + shikimate dehydrogenase aroE: shikimate dehydrogenase~[E] COG0169 Shikimate 5-dehydrogenase gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_185 CH60_1850 CH60_1850 CH60_1850 1993127 1993708 + electron transport complex%2C RnfABCDGE type%2C A subunit rnfA: electron transport complex%2C RnfABCDGE type%2C A subunit~[C] COG4657 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfA gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1850 CH60_1851 CH60_1851 CH60_1851 1993708 1994274 + electron transport complex%2C RnfABCDGE type%2C B subunit rnfB: electron transport complex%2C RnfABCDGE type%2C B subunit~[C] COG2878 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfB gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1851 CH60_1852 CH60_1852 CH60_1852 1994324 1996303 + electron transport complex%2C RnfABCDGE type%2C C subunit rnfC: electron transport complex%2C RnfABCDGE type%2C C subunit~[C] COG4656 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfC gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1852 CH60_1853 CH60_1853 CH60_1853 1996408 1997313 - helix-turn-helix domain protein [K] COG2207 AraC-type DNA-binding domain-containing proteins gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1853 CH60_1854 CH60_1854 CH60_1854 1997802 1998896 + electron transport complex%2C RnfABCDGE type%2C D subunit rnfD: electron transport complex%2C RnfABCDGE type%2C D subunit~[C] COG4658 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfD gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1854 CH60_1855 CH60_1855 CH60_1855 1998906 1999535 + electron transport complex%2C RnfABCDGE type%2C G subunit rnfG: electron transport complex%2C RnfABCDGE type%2C G subunit~[C] COG4659 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfG gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1855 CH60_1856 CH60_1856 CH60_1856 1999532 2000233 + electron transport complex%2C RnfABCDGE type%2C E subunit rnfE: electron transport complex%2C RnfABCDGE type%2C E subunit~[C] COG4660 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfE gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1856 CH60_1857 CH60_1857 nth nth 2000230 2000871 + endonuclease III nth: endonuclease III~[L] COG0177 Predicted EndoIII-related endonuclease gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1857 CH60_1858 CH60_1858 CH60_1858 2001054 2002052 - 3-beta hydroxysteroid dehydrogenase/isomerase family protein [MG] COG0451 Nucleoside-diphosphate-sugar epimerases gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1858 CH60_1859 CH60_1859 CH60_1859 2002090 2003400 - major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1859 CH60_186 CH60_186 CH60_186 190508 191050 - hexapeptide repeat of succinyl-transferase family protein [R] COG0663 Carbonic anhydrases/acetyltransferases%2C isoleucine patch superfamily gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_186 CH60_1860 CH60_1860 rnb rnb 2004059 2005993 + exoribonuclease II RNase_B: exoribonuclease II~[K] COG4776 Exoribonuclease II gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1860 CH60_1861 CH60_1861 CH60_1861 2006343 2008409 + carbon starvation CstA family protein [T] COG1966 Carbon starvation protein%2C predicted membrane protein gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1861 CH60_1862 CH60_1862 CH60_1862 2008402 2008707 + hypothetical protein conserved hypothetical protein~[S] COG2879 Uncharacterized small protein gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1862 CH60_1863 CH60_1863 fsa fsa 2008824 2009489 - fructose-6-phosphate aldolase fsa_talC_mipB: fructose-6-phosphate aldolase~[G] COG0176 Transaldolase gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1863 CH60_1864 CH60_1864 CH60_1864 2009823 2010071 + hypothetical protein conserved hypothetical protein~[S] COG5460 Uncharacterized conserved protein gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1864 CH60_1865 CH60_1865 araD araD 2010100 2010795 - L-ribulose-5-phosphate 4-epimerase araD: L-ribulose-5-phosphate 4-epimerase~[G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1865 CH60_1866 CH60_1866 CH60_1866 2011275 2011490 + glycine zipper 2TM domain protein gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1866 CH60_1867 CH60_1867 CH60_1867 2011747 2012073 - translation initiation factor SUI1 family protein [J] COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1867 CH60_1868 CH60_1868 pyrF pyrF 2012073 2012810 - orotidine 5'-phosphate decarboxylase pyrF: orotidine 5'-phosphate decarboxylase~[F] COG0284 Orotidine-5'-phosphate decarboxylase gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1868 CH60_1869 CH60_1869 CH60_1869 2013281 2013580 + hypothetical protein conserved hypothetical protein gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1869 CH60_187 CH60_187 CH60_187 191354 191473 + hypothetical protein conserved hypothetical protein gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_187 CH60_1870 CH60_1870 CH60_1870 2013702 2014871 - tetratricopeptide repeat family protein [G] COG2956 Predicted N-acetylglucosaminyl transferase gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1870 CH60_1871 CH60_1871 yciS yciS 2014878 2015189 - inner membrane protein yciS [S] COG3771 Predicted membrane protein gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1871 CH60_1872 CH60_1872 CH60_1872 2015358 2016119 - PAP2 superfamily protein [I] COG0671 Membrane-associated phospholipid phosphatase gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1872 CH60_1873 CH60_1873 ribA ribA 2016625 2017215 + GTP cyclohydrolase-2 [H] COG0807 GTP cyclohydrolase II gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1873 CH60_1874 CH60_1874 acnA acnA 2017379 2020051 - aconitate hydratase 1 aconitase_1: aconitate hydratase 1~[C] COG1048 Aconitase A gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1874 CH60_1875 CH60_1875 CH60_1875 2020415 2021272 - hypothetical protein conserved hypothetical protein gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1875 CH60_1876 CH60_1876 CH60_1876 2021608 2022582 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1876 CH60_1877 CH60_1877 topA topA 2022979 2025594 - DNA topoisomerase I topA_bact: DNA topoisomerase I~[L] COG0551 Zn-finger domain associated with topoisomerase type I gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1877 CH60_1878 CH60_1878 CH60_1878 2025621 2025920 - hypothetical protein conserved hypothetical protein gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1878 CH60_1879 CH60_1879 yciN yciN 2026013 2026264 + protein yciN gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1879 CH60_188 CH60_188 CH60_188 191609 193136 + 16S ribosomal RNA rRNA gene186 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_188 CH60_1880 CH60_1880 CH60_1880 2026383 2027429 - peptidase S49 family protein [OU] COG0616 Periplasmic serine proteases (ClpP class) gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1880 CH60_1881 CH60_1881 CH60_1881 2027601 2028362 + short chain dehydrogenase family protein [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1881 CH60_1882 CH60_1882 cobO cobO 2028379 2028969 + cob(I)yrinic acid a%2Cc-diamide adenosyltransferase cobA: cob(I)yrinic acid a%2Cc-diamide adenosyltransferase~[H] COG2109 ATP:corrinoid adenosyltransferase gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1882 CH60_1883 CH60_1883 CH60_1883 2029092 2030048 - pseudouridine synthase family protein [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1883 CH60_1884 CH60_1884 CH60_1884 2030456 2031076 - tRNA threonylcarbamoyl adenosine modification protein%2C Sua5/YciO/YrdC/YwlC family [J] COG0009 Putative translation factor (SUA5) gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1884 CH60_1885 CH60_1885 CH60_1885 2031093 2032028 - PHP domain protein [R] COG0613 Predicted metal-dependent phosphoesterases (PHP family) gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1885 CH60_1886 CH60_1886 trpE trpE 2032447 2034009 + anthranilate synthase component I trpE_proteo: anthranilate synthase component I~[EH] COG0147 Anthranilate/para-aminobenzoate synthases component I gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1886 CH60_1887 CH60_1887 trpG trpG 2034009 2034587 + anthranilate synthase component II [EH] COG0512 Anthranilate/para-aminobenzoate synthases component II gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1887 CH60_1888 CH60_1888 trpD trpD 2034602 2035600 + anthranilate phosphoribosyltransferase [E] COG0547 Anthranilate phosphoribosyltransferase gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1888 CH60_1889 CH60_1889 CH60_1889 2035604 2037031 + indole-3-glycerol phosphate synthase family protein [E] COG0134 Indole-3-glycerol phosphate synthase gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1889 CH60_189 CH60_189 CH60_189 193244 193320 + tRNA-Ile tRNA gene187 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_189 CH60_1890 CH60_1890 trpB trpB 2037188 2038378 + tryptophan synthase%2C beta subunit trpB: tryptophan synthase%2C beta subunit~[E] COG0133 Tryptophan synthase beta chain gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1890 CH60_1891 CH60_1891 trpA trpA 2038378 2039184 + tryptophan synthase%2C alpha subunit trpA: tryptophan synthase%2C alpha subunit~[E] COG0159 Tryptophan synthase alpha chain gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1891 CH60_1892 CH60_1892 CH60_1892 2039527 2039841 + BON domain protein [R] COG2823 Predicted periplasmic or secreted lipoprotein gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1892 CH60_1893 CH60_1893 CH60_1893 2039988 2040623 - oprF membrane domain protein [M] COG3047 Outer membrane protein W gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1893 CH60_1894 CH60_1894 CH60_1894 2041109 2041879 + hypothetical protein conserved hypothetical protein gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1894 CH60_1895 CH60_1895 CH60_1895 2042000 2042620 - STAS domain protein [P] COG0659 Sulfate permease and related transporters (MFS superfamily) gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1895 CH60_1896 CH60_1896 CH60_1896 2042652 2043734 - sulfate transporter family protein [P] COG0659 Sulfate permease and related transporters (MFS superfamily) gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1896 CH60_1897 CH60_1897 ispZ ispZ 2043965 2044507 + intracellular septation protein A ispZ: intracellular septation protein A~[D] COG2917 Intracellular septation protein A gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1897 CH60_1898 CH60_1898 CH60_1898 2044587 2045036 + thioesterase superfamily protein [I] COG1607 Acyl-CoA hydrolase gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1898 CH60_1899 CH60_1899 CH60_1899 2045184 2045864 + transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1899 CH60_19 CH60_19 CH60_19 23118 23960 + ribosomal RNA small subunit methyltransferase D%2C RsmJ family protein [R] COG2961 Protein involved in catabolism of external DNA gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_19 CH60_190 CH60_190 CH60_190 193372 193447 + tRNA-Ala tRNA gene188 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_190 CH60_1900 CH60_1900 CH60_1900 2045951 2046391 + transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1900 CH60_1901 CH60_1901 CH60_1901 2046427 2047074 - hypothetical protein tonB_Cterm: TonB family C-terminal domain protein~[M] COG0810 Periplasmic protein TonB%2C links inner and outer membranes gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1901 CH60_1902 CH60_1902 CH60_1902 2047217 2047339 - hypothetical protein conserved hypothetical protein gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1902 CH60_1903 CH60_1903 CH60_1903 2047543 2047782 + YCII-related domain protein [S] COG2350 Uncharacterized protein conserved in bacteria gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1903 CH60_1904 CH60_1904 CH60_1904 2048005 2048250 + transcription factor zinc-finger family protein [S] COG3809 Uncharacterized protein conserved in bacteria gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1904 CH60_1905 CH60_1905 CH60_1905 2048366 2048629 - hypothetical protein conserved hypothetical protein gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1905 CH60_1906 CH60_1906 ail ail 2048850 2049389 - attachment invasion locus protein [M] COG3637 Opacity protein and related surface antigens gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1906 CH60_1907 CH60_1907 cls cls 2050436 2051896 + cardiolipin synthase bac_cardiolipin: cardiolipin synthase~[I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1907 CH60_1908 CH60_1908 CH60_1908 2052061 2052384 + hypothetical protein conserved hypothetical protein~[S] COG3099 Uncharacterized protein conserved in bacteria gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1908 CH60_1909 CH60_1909 CH60_1909 2052683 2052898 - hypothetical protein conserved hypothetical protein gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1909 CH60_191 CH60_191 CH60_191 193668 196572 + 23S ribosomal RNA rRNA gene189 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_191 CH60_1910 CH60_1910 CH60_1910 2053459 2054460 - hypothetical protein oligo_HPY: oligopeptide/dipeptide ABC transporter%2C ATP-binding%2C C-terminal domain protein~[E] COG4608 ABC-type oligopeptide transport system%2C ATPase component gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1910 CH60_1911 CH60_1911 CH60_1911 2054457 2055458 - hypothetical protein oligo_HPY: oligopeptide/dipeptide ABC transporter%2C ATP-binding%2C C-terminal domain protein~[EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system%2C ATPase component gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1911 CH60_1912 CH60_1912 oppC oppC 2055470 2056375 - oligopeptide transport system permease protein oppC [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1912 CH60_1913 CH60_1913 oppB oppB 2056394 2057314 - oligopeptide transport system permease protein oppB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1913 CH60_1914 CH60_1914 oppA3 oppA3 2057401 2059038 - periplasmic oligopeptide-binding protein [E] COG4166 ABC-type oligopeptide transport system%2C periplasmic component gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1914 CH60_1915 CH60_1915 CH60_1915 2059876 2060520 - marC integral membrane family protein [U] COG2095 Multiple antibiotic transporter gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1915 CH60_1916 CH60_1916 CH60_1916 2061327 2064002 + aldehyde dehydrogenase family protein [C] COG1012 NAD-dependent aldehyde dehydrogenases gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1916 CH60_1917 CH60_1917 CH60_1917 2064753 2065343 - thymidine kinase family protein [F] COG1435 Thymidine kinase gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1917 CH60_1918 CH60_1918 hns hns 2066093 2066500 + DNA-binding protein H-NS [R] COG2916 DNA-binding protein H-NS gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1918 CH60_1919 CH60_1919 CH60_1919 2066935 2068281 - nucleotide sugar dehydrogenase family protein NDP-sugDHase: nucleotide sugar dehydrogenase family protein~[M] COG1004 Predicted UDP-glucose 6-dehydrogenase gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1919 CH60_192 CH60_192 CH60_192 196684 196798 + 5S ribosomal RNA rRNA gene190 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_192 CH60_1920 CH60_1920 CH60_1920 2068588 2069604 - response regulator [T] COG0784 FOG: CheY-like receiver gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1920 CH60_1921 CH60_1921 CH60_1921 2070938 2071402 + SEC-C motif family protein [S] COG3012 Uncharacterized protein conserved in bacteria gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1921 CH60_1922 CH60_1922 purU purU 2071486 2072334 + formyltetrahydrofolate deformylase purU: formyltetrahydrofolate deformylase~[F] COG0788 Formyltetrahydrofolate hydrolase gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1922 CH60_1924 CH60_1924 CH60_1924 2072483 2072567 + tRNA-Tyr tRNA gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1924 CH60_1925 CH60_1925 CH60_1925 2073075 2073935 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1925 CH60_1926 CH60_1926 xth xth 2074745 2075551 + exodeoxyribonuclease III exoDNase_III: exodeoxyribonuclease III~[L] COG0708 Exonuclease III gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1926 CH60_1927 CH60_1927 nudG nudG 2075649 2076035 + CTP pyrophosphohydrolase [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1927 CH60_1928 CH60_1928 CH60_1928 2076048 2076338 - hypothetical protein conserved hypothetical protein gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1928 CH60_1929 CH60_1929 topB topB 2076335 2078260 - DNA topoisomerase 3 [L] COG0550 Topoisomerase IA gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1929 CH60_193 CH60_193 CH60_193 197264 197482 + transposase family protein [L] COG2801 Transposase and inactivated derivatives gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_193 CH60_1930 CH60_1930 selD selD 2078337 2079383 - selenide%2C water dikinase selD: selenide%2C water dikinase~[E] COG0709 Selenophosphate synthase gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1930 CH60_1931 CH60_1931 CH60_1931 2079608 2080159 - nitroreductase family protein [C] COG0778 Nitroreductase gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1931 CH60_1932 CH60_1932 sppA sppA 2080322 2082172 + signal peptide peptidase SppA%2C 67K type sppA_67K: signal peptide peptidase SppA%2C 67K type~[OU] COG0616 Periplasmic serine proteases (ClpP class) gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1932 CH60_1933 CH60_1933 ansA ansA 2082289 2083305 + cytoplasmic L-asparaginase I [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1933 CH60_1934 CH60_1934 CH60_1934 2083320 2083967 + isochorismatase family protein [Q] COG1335 Amidases related to nicotinamidase gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1934 CH60_1935 CH60_1935 CH60_1935 2084101 2084373 - hypothetical protein conserved hypothetical protein~[S] COG3139 Uncharacterized protein conserved in bacteria gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1935 CH60_1936 CH60_1936 msrB msrB 2084444 2084857 - methionine-R-sulfoxide reductase [O] COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1936 CH60_1937 CH60_1937 gap gap 2085205 2086200 + glyceraldehyde-3-phosphate dehydrogenase%2C type I GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase%2C type I~[G] COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1937 CH60_1938 CH60_1938 CH60_1938 2086514 2087389 + aldose 1-epimerase family protein [G] COG0676 Uncharacterized enzymes related to aldose 1-epimerase gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1938 CH60_1939 CH60_1939 CH60_1939 2087462 2088232 - mltA-interacting MipA family protein [M] COG3713 Outer membrane protein V gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1939 CH60_194 CH60_194 CH60_194 197610 198362 + integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_194 CH60_1940 CH60_1940 CH60_1940 2088655 2090589 + hypothetical protein prkA serine kinase C-terminal domain protein~[T] COG2766 Putative Ser protein kinase gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1940 CH60_1941 CH60_1941 CH60_1941 2090739 2092013 + hypothetical protein conserved hypothetical protein~[S] COG2718 Uncharacterized conserved protein gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1941 CH60_1942 CH60_1942 CH60_1942 2092121 2093239 + eamA-like transporter family protein [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1942 CH60_1943 CH60_1943 CH60_1943 2093274 2094179 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1943 CH60_1944 CH60_1944 CH60_1944 2094377 2095246 + pirin family protein [R] COG1741 Pirin-related protein gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1944 CH60_1945 CH60_1945 CH60_1945 2095511 2096713 + drug resistance transporter%2C Bcr/CflA subfamily protein efflux_Bcr_CflA: drug resistance transporter%2C Bcr/CflA subfamily protein~[GEPR] COG0477 Permeases of the major facilitator superfamily gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1945 CH60_1946 CH60_1946 CH60_1946 2096729 2098033 - ketopantoate reductase PanE/ApbA family protein [E] COG0665 Glycine/D-amino acid oxidases (deaminating) gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1946 CH60_1947 CH60_1947 CH60_1947 2098498 2100033 + spoVR like family protein [S] COG2719 Uncharacterized conserved protein gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1947 CH60_1948 CH60_1948 fadR fadR 2100251 2100970 - fatty acid metabolism transcriptional regulator FadR fadR_gamma: fatty acid metabolism transcriptional regulator FadR~[K] COG2186 Transcriptional regulators gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1948 CH60_1949 CH60_1949 nhaB nhaB 2101214 2102788 + Na+/H+ antiporter NhaB nhaB: Na+/H+ antiporter NhaB~[P] COG3067 Na+/H+ antiporter gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1949 CH60_195 CH60_195 CH60_195 198757 199017 + hypothetical protein conserved hypothetical protein gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_195 CH60_1950 CH60_1950 CH60_1950 2103024 2103554 + disulfide bond formation DsbB family protein [O] COG1495 Disulfide bond formation protein DsbB gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1950 CH60_1951 CH60_1951 CH60_1951 2103971 2104327 - hypothetical protein conserved hypothetical protein gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1951 CH60_1952 CH60_1952 CH60_1952 2105419 2106159 + hypothetical protein conserved hypothetical protein gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1952 CH60_1953 CH60_1953 CH60_1953 2106176 2107375 + beta-eliminating lyase family protein [E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1953 CH60_1954 CH60_1954 CH60_1954 2107379 2108551 + major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1954 CH60_1955 CH60_1955 CH60_1955 2108856 2109668 + transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1955 CH60_1956 CH60_1956 CH60_1956 2110028 2110243 - putative formyltetrahydrofolate deformylase gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1956 CH60_1957 CH60_1957 CH60_1957 2109625 2110065 + transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1957 CH60_1958 CH60_1958 CH60_1958 2110406 2110582 + hypothetical protein gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1958 CH60_1959 CH60_1959 CH60_1959 2110667 2111230 - hypothetical protein BRO family%2C N-terminal domain protein~[K] COG3617 Prophage antirepressor gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1959 CH60_196 CH60_196 CH60_196 199027 199470 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_196 CH60_1960 CH60_1960 CH60_1960 2111501 2111890 - phage antitermination Q family protein gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1960 CH60_1961 CH60_1961 CH60_1961 2111891 2112496 - bacteriophage Lambda NinG family protein gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1961 CH60_1962 CH60_1962 ninB ninB 2112570 2113016 - protein ninB gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1962 CH60_1963 CH60_1963 CH60_1963 2113043 2113741 + D12 class N6 adenine-specific DNA methyltransferase family protein [L] COG0338 Site-specific DNA methylase gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1963 CH60_1964 CH60_1964 CH60_1964 2114041 2114301 + hypothetical protein conserved hypothetical protein gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1964 CH60_1965 CH60_1965 CH60_1965 2114469 2115056 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1965 CH60_1966 CH60_1966 CH60_1966 2115035 2115247 - putative transposition helper domain protein [L] COG1484 DNA replication protein gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1966 CH60_1967 CH60_1967 CH60_1967 2115247 2116269 - helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1967 CH60_1968 CH60_1968 CH60_1968 2116339 2117577 + phage integrase family protein [L] COG0582 Integrase gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1968 CH60_1969 CH60_1969 CH60_1969 2117604 2118050 - putative zinc-/iron-chelating domain protein [S] COG2983 Uncharacterized conserved protein gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1969 CH60_197 CH60_197 CH60_197 199446 199805 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_197 CH60_1970 CH60_1970 CH60_1970 2118153 2118809 - fumarylacetoacetate (FAA) hydrolase family protein [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1%2C7-dioic acid hydratase (catechol pathway) gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1970 CH60_1971 CH60_1971 CH60_1971 2118880 2119965 - lytic murein transglycosylase family protein mltB_2: lytic murein transglycosylase family protein~[M] COG2951 Membrane-bound lytic murein transglycosylase B gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1971 CH60_1972 CH60_1972 CH60_1972 2120106 2120378 - hypothetical protein conserved hypothetical protein~[S] COG3100 Uncharacterized protein conserved in bacteria gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1972 CH60_1973 CH60_1973 minC minC 2121099 2121785 + septum site-determining protein MinC minC: septum site-determining protein MinC~[D] COG0850 Septum formation inhibitor gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1973 CH60_1974 CH60_1974 minD minD 2121810 2122622 + septum site-determining protein MinD minD_bact: septum site-determining protein MinD~[D] COG2894 Septum formation inhibitor-activating ATPase gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1974 CH60_1975 CH60_1975 minE minE 2122626 2122895 + cell division topological specificity factor MinE minE: cell division topological specificity factor MinE~[D] COG0851 Septum formation topological specificity factor gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1975 CH60_1976 CH60_1976 rnd rnd 2123132 2124253 - ribonuclease D rnd: ribonuclease D~[J] COG0349 Ribonuclease D gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1976 CH60_1977 CH60_1977 CH60_1977 2124413 2126101 - AMP-binding enzyme family protein [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1977 CH60_1978 CH60_1978 CH60_1978 2126744 2127349 - outer membrane lipo%2C Slp family protein slp: outer membrane lipo%2C Slp family protein~[M] COG3065 Starvation-inducible outer membrane lipoprotein gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1978 CH60_1979 CH60_1979 yeaZ yeaZ 2127486 2128184 - tRNA threonylcarbamoyl adenosine modification protein YeaZ T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ~[O] COG1214 Inactive homolog of metal-dependent proteases%2C putative molecular chaperone gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1979 CH60_198 CH60_198 CH60_198 199805 200119 - putative transposase Orf A%2C insertion element IS100 [L] COG4584 Transposase and inactivated derivatives gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_198 CH60_1980 CH60_1980 CH60_1980 2128256 2129650 - DEAD_2 family protein [KL] COG1199 Rad3-related DNA helicases gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1980 CH60_1981 CH60_1981 CH60_1981 2129781 2130125 + endoribonuclease L-PSP family protein [J] COG0251 Putative translation initiation inhibitor%2C yjgF family gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1981 CH60_1982 CH60_1982 CH60_1982 2130257 2130586 - small Multidrug Resistance family protein [P] COG2076 Membrane transporters of cations and cationic drugs gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1982 CH60_1983 CH60_1983 CH60_1983 2130573 2131016 - small Multidrug Resistance family protein [P] COG2076 Membrane transporters of cations and cationic drugs gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1983 CH60_1984 CH60_1984 eda eda 2131731 2132372 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein~[G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1984 CH60_1985 CH60_1985 CH60_1985 2132379 2132570 - hypothetical protein conserved hypothetical protein gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1985 CH60_1986 CH60_1986 zwf zwf 2132614 2134089 - glucose-6-phosphate dehydrogenase zwf: glucose-6-phosphate dehydrogenase~[G] COG0364 Glucose-6-phosphate 1-dehydrogenase gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1986 CH60_1987 CH60_1987 CH60_1987 2134451 2135320 + SIS domain protein [K] COG1737 Transcriptional regulators gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1987 CH60_1988 CH60_1988 pyk pyk 2135650 2137092 + pyruvate kinase pyruv_kin: pyruvate kinase~[G] COG0469 Pyruvate kinase gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1988 CH60_1989 CH60_1989 msbB msbB 2137432 2138394 - lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase~[M] COG1560 Lauroyl/myristoyl acyltransferase gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1989 CH60_199 CH60_199 CH60_199 200083 200826 - helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_199 CH60_1990 CH60_1990 CH60_1990 2138661 2139977 - lysM domain protein [M] COG0739 Membrane proteins related to metalloendopeptidases gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1990 CH60_1991 CH60_1991 CH60_1991 2139998 2140954 - periplasmic solute binding family protein [P] COG4531 ABC-type Zn2+ transport system%2C periplasmic component/surface adhesin gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1991 CH60_1992 CH60_1992 CH60_1992 2141030 2141788 + ABC transporter family protein [P] COG1121 ABC-type Mn/Zn transport systems%2C ATPase component gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1992 CH60_1993 CH60_1993 CH60_1993 2141785 2142570 + ABC 3 transport family protein [P] COG1108 ABC-type Mn2+/Zn2+ transport systems%2C permease components gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1993 CH60_1994 CH60_1994 ruvB ruvB 2142625 2143629 - Holliday junction DNA helicase RuvB ruvB: Holliday junction DNA helicase RuvB~[L] COG2255 Holliday junction resolvasome%2C helicase subunit gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1994 CH60_1995 CH60_1995 ruvA ruvA 2143791 2144405 - Holliday junction DNA helicase RuvA ruvA: Holliday junction DNA helicase RuvA~[L] COG0632 Holliday junction resolvasome%2C DNA-binding subunit gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1995 CH60_1996 CH60_1996 ruvC ruvC 2144688 2145209 - crossover junction endodeoxyribonuclease RuvC ruvC: crossover junction endodeoxyribonuclease RuvC~[L] COG0817 Holliday junction resolvasome%2C endonuclease subunit gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1996 CH60_1997 CH60_1997 CH60_1997 2145418 2146161 - DNA-binding regulatory%2C YebC/PmpR family protein [S] COG0217 Uncharacterized conserved protein gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1997 CH60_1998 CH60_1998 CH60_1998 2146219 2146662 - NUDIX domain protein [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1998 CH60_1999 CH60_1999 aspS aspS 2146662 2148458 - aspartate--tRNA ligase aspS_bact: aspartate--tRNA ligase~[J] COG0173 Aspartyl-tRNA synthetase gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_1999 CH60_2 CH60_2 CH60_2 1444 2181 + hypothetical protein transcriptional regulatory%2C C terminal family protein~[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2 CH60_20 CH60_20 gor gor 24146 25498 + glutathione-disulfide reductase gluta_reduc_1: glutathione-disulfide reductase~[C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase (E3) component%2C and related enzymes gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_20 CH60_200 CH60_200 rplI rplI 201130 201582 - ribosomal protein L9 L9: ribosomal protein L9~[J] COG0359 Ribosomal protein L9 gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_200 CH60_2000 CH60_2000 CH60_2000 2149657 2150097 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2000 CH60_2001 CH60_2001 CH60_2001 2150142 2150864 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2001 CH60_2002 CH60_2002 CH60_2002 2150922 2151653 + hypothetical protein conserved hypothetical protein~[S] COG1801 Uncharacterized conserved protein gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2002 CH60_2003 CH60_2003 yecN yecN 2151833 2152228 + inner membrane protein yecN [R] COG3788 Uncharacterized relative of glutathione S-transferase%2C MAPEG superfamily gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2003 CH60_2004 CH60_2004 cmoA cmoA 2152419 2153222 + tRNA (cmo5U34)-methyltransferase [QR] COG0500 SAM-dependent methyltransferases gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2004 CH60_2005 CH60_2005 cmoB cmoB 2153219 2154190 + tRNA (mo5U34)-methyltransferase [QR] COG0500 SAM-dependent methyltransferases gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2005 CH60_2006 CH60_2006 CH60_2006 2154383 2155147 - cutC family protein [P] COG3142 Uncharacterized protein involved in copper resistance gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2006 CH60_2007 CH60_2007 CH60_2007 2155379 2155954 - yecM family protein [S] COG3102 Uncharacterized protein conserved in bacteria gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2007 CH60_2008 CH60_2008 argS argS 2156573 2158303 + arginine--tRNA ligase argS: arginine--tRNA ligase~[J] COG0018 Arginyl-tRNA synthetase gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2008 CH60_2009 CH60_2009 CH60_2009 2158534 2163265 - hemagluttinin repeat family protein pseudogene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2009 CH60_201 CH60_201 rpsR rpsR 201622 201849 - ribosomal protein S18 S18: ribosomal protein S18~[J] COG0238 Ribosomal protein S18 gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_201 CH60_2011 CH60_2011 shlB shlB 2163295 2164956 - hemolysin transporter protein shlB [U] COG2831 Hemolysin activation/secretion protein gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2011 CH60_2012 CH60_2012 mviN mviN 2165444 2166979 - murein biosynthesis integral membrane protein MurJ murJ_mviN: murein biosynthesis integral membrane protein MurJ~[R] COG0728 Uncharacterized membrane protein%2C putative virulence factor gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2012 CH60_2013 CH60_2013 CH60_2013 2167246 2168157 - oxidoreductase%2C NAD-binding Rossmann fold family protein [R] COG0673 Predicted dehydrogenases and related proteins gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2013 CH60_2014 CH60_2014 CH60_2014 2168864 2169448 - acetyltransferase family protein [J] COG1670 Acetyltransferases%2C including N-acetylases of ribosomal proteins gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2014 CH60_2015 CH60_2015 CH60_2015 2169742 2170947 + sugar (and other) transporter family protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2015 CH60_2016 CH60_2016 CH60_2016 2171342 2171905 + hypothetical protein conserved hypothetical protein gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2016 CH60_2017 CH60_2017 CH60_2017 2172359 2172919 - nitrate reductase delta subunit [R] COG3381 Uncharacterized component of anaerobic dehydrogenases gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2017 CH60_2018 CH60_2018 CH60_2018 2172956 2173693 - PHP domain protein [ER] COG1387 Histidinol phosphatase and related hydrolases of the PHP family gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2018 CH60_2019 CH60_2019 CH60_2019 2173982 2174071 + tRNA-Ser tRNA gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2019 CH60_202 CH60_202 rpsF rpsF 202180 202572 - ribosomal protein S6 S6: ribosomal protein S6~[J] COG0360 Ribosomal protein S6 gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_202 CH60_2020 CH60_2020 CH60_2020 2174328 2175440 - ROK family protein [KG] COG1940 Transcriptional regulator/sugar kinase gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2020 CH60_2021 CH60_2021 CH60_2021 2175454 2176284 - glycerophosphoryl diester phosphodiesterase family protein [C] COG0584 Glycerophosphoryl diester phosphodiesterase gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2021 CH60_2022 CH60_2022 CH60_2022 2176498 2176824 + ABC transporter family protein [E] COG3842 ABC-type spermidine/putrescine transport systems%2C ATPase components gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2022 CH60_2023 CH60_2023 CH60_2023 2176912 2177370 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2023 CH60_2024 CH60_2024 CH60_2024 2177391 2178275 + ABC transporter family protein [E] COG3842 ABC-type spermidine/putrescine transport systems%2C ATPase components gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2024 CH60_2025 CH60_2025 CH60_2025 2178272 2179138 + binding--dependent transport system inner membrane component family protein [E] COG1176 ABC-type spermidine/putrescine transport system%2C permease component I gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2025 CH60_2026 CH60_2026 CH60_2026 2179135 2179971 + binding--dependent transport system inner membrane component family protein [E] COG1177 ABC-type spermidine/putrescine transport system%2C permease component II gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2026 CH60_2027 CH60_2027 CH60_2027 2179991 2181073 + bacterial extracellular solute-binding family protein [R] COG4134 ABC-type uncharacterized transport system%2C periplasmic component gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2027 CH60_2028 CH60_2028 CH60_2028 2181374 2182249 + glycerophosphoryl diester phosphodiesterase family protein [C] COG0584 Glycerophosphoryl diester phosphodiesterase gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2028 CH60_2029 CH60_2029 CH60_2029 2182391 2182480 + tRNA-Ser tRNA gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2029 CH60_203 CH60_203 CH60_203 202586 202864 - hypothetical protein conserved hypothetical protein gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_203 CH60_2030 CH60_2030 sulP sulP 2183324 2185021 + sulfate permease family protein sulP: sulfate permease family protein~[P] COG0659 Sulfate permease and related transporters (MFS superfamily) gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2030 CH60_2031 CH60_2031 kdsA kdsA 2185498 2186352 - 3-deoxy-8-phosphooctulonate synthase KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase~[M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2031 CH60_2032 CH60_2032 CH60_2032 2186448 2187257 - tetratricopeptide repeat family protein [S] COG2912 Uncharacterized conserved protein gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2032 CH60_2033 CH60_2033 CH60_2033 2187254 2187655 - invasion expression up-regulator%2C SirB family protein [S] COG3094 Uncharacterized protein conserved in bacteria gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2033 CH60_2034 CH60_2034 prmC prmC 2187719 2188549 - protein-(glutamine-N5) methyltransferase%2C release factor-specific RF_mod_PrmC: protein-(glutamine-N5) methyltransferase%2C release factor-specific~[J] COG2890 Methylase of polypeptide chain release factors gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2034 CH60_2035 CH60_2035 prfA prfA 2188549 2189631 - peptide chain release factor 1 prfA: peptide chain release factor 1~[J] COG0216 Protein chain release factor A gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2035 CH60_2036 CH60_2036 hemA hemA 2189664 2190926 - glutamyl-tRNA reductase hemA: glutamyl-tRNA reductase~[H] COG0373 Glutamyl-tRNA reductase gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2036 CH60_2037 CH60_2037 lolB lolB 2191232 2191855 + outer membrane lipoprotein LolB lolB: outer membrane lipoprotein LolB~[M] COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2037 CH60_2038 CH60_2038 ispE ispE 2191917 2192756 + 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase~[I] COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2038 CH60_2039 CH60_2039 prs prs 2193097 2194044 + ribose-phosphate pyrophosphokinase [FE] COG0462 Phosphoribosylpyrophosphate synthetase gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2039 CH60_204 CH60_204 CH60_204 202939 203688 - dienelactone hydrolase family protein [R] COG1073 Hydrolases of the alpha/beta superfamily gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_204 CH60_2040 CH60_2040 CH60_2040 2194246 2194518 - hypothetical protein conserved hypothetical protein gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2040 CH60_2041 CH60_2041 pth pth 2194880 2195470 + aminoacyl-tRNA hydrolase pth: aminoacyl-tRNA hydrolase~[J] COG0193 Peptidyl-tRNA hydrolase gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2041 CH60_2042 CH60_2042 engD engD 2195634 2196725 + GTP-dependent nucleic acid-binding protein engD [J] COG0012 Predicted GTPase%2C probable translation factor gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2042 CH60_2043 CH60_2043 CH60_2043 2196938 2197336 + helix-turn-helix domain protein gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2043 CH60_2044 CH60_2044 CH60_2044 2197354 2197863 + integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2044 CH60_2045 CH60_2045 CH60_2045 2197911 2198309 - rhodanese-like domain protein [P] COG0607 Rhodanese-related sulfurtransferase gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2045 CH60_2046 CH60_2046 CH60_2046 2198317 2199147 - alpha/beta hydrolase fold family protein [I] COG0657 Esterase/lipase gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2046 CH60_2047 CH60_2047 CH60_2047 2199144 2199800 - hypothetical protein conserved hypothetical protein gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2047 CH60_2048 CH60_2048 CH60_2048 2200431 2201273 + hypothetical protein conserved hypothetical protein gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2048 CH60_2049 CH60_2049 CH60_2049 2201481 2202176 - hypothetical protein conserved hypothetical protein gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2049 CH60_205 CH60_205 CH60_205 203879 204190 + hypothetical protein conserved hypothetical protein gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_205 CH60_2050 CH60_2050 CH60_2050 2202191 2202856 - NADPH-dependent FMN reductase family protein [C] COG0716 Flavodoxins gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2050 CH60_2051 CH60_2051 CH60_2051 2203047 2204138 - X-Pro dipeptidyl-peptidase family protein [R] COG1073 Hydrolases of the alpha/beta superfamily gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2051 CH60_2052 CH60_2052 CH60_2052 2204403 2205095 + response regulator [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2052 CH60_2053 CH60_2053 CH60_2053 2205107 2206492 + heavy metal sensor kinase family protein cztS_silS_copS: heavy metal sensor kinase family protein~[T] COG0642 Signal transduction histidine kinase gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2053 CH60_2054 CH60_2054 CH60_2054 2206772 2207191 + carboxymuconolactone decarboxylase family protein [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2054 CH60_2055 CH60_2055 CH60_2055 2207246 2207716 + araC-like ligand binding domain protein [S] COG1917 Uncharacterized conserved protein%2C contains double-stranded beta-helix domain gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2055 CH60_2056 CH60_2056 CH60_2056 2207929 2209002 + alpha/beta hydrolase family protein gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2056 CH60_2057 CH60_2057 CH60_2057 2209793 2210698 + HEAT repeats family protein gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2057 CH60_2058 CH60_2058 CH60_2058 2210704 2211636 + hypothetical protein conserved hypothetical protein gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2058 CH60_2059 CH60_2059 CH60_2059 2211623 2212573 + hypothetical protein conserved hypothetical protein gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2059 CH60_206 CH60_206 CH60_206 204262 205893 - hypothetical protein acyl-CoA dehydrogenase%2C C-terminal domain protein~[I] COG1960 Acyl-CoA dehydrogenases gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_206 CH60_2060 CH60_2060 CH60_2060 2212619 2212762 + hypothetical protein conserved hypothetical protein gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2060 CH60_2061 CH60_2061 CH60_2061 2212914 2213594 + short chain dehydrogenase family protein [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2061 CH60_2062 CH60_2062 CH60_2062 2213699 2214358 + methyltransferase small domain protein [QR] COG0500 SAM-dependent methyltransferases gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2062 CH60_2063 CH60_2063 CH60_2063 2214493 2215131 - ribose/Galactose Isomerase family protein [G] COG0698 Ribose 5-phosphate isomerase RpiB gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2063 CH60_2064 CH60_2064 CH60_2064 2215378 2217489 - hypothetical protein conserved hypothetical protein gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2064 CH60_2065 CH60_2065 CH60_2065 2217694 2217852 - hypothetical protein conserved hypothetical protein gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2065 CH60_2066 CH60_2066 CH60_2066 2218067 2220229 + sel1 repeat family protein [S] COG2849 Uncharacterized protein conserved in bacteria gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2066 CH60_2067 CH60_2067 CH60_2067 2220349 2221557 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2067 CH60_2068 CH60_2068 CH60_2068 2222199 2223182 - putative glycosyl transferase [GC] COG1819 Glycosyl transferases%2C related to UDP-glucuronosyltransferase gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2068 CH60_2069 CH60_2069 CH60_2069 2221676 2222245 + hypothetical protein conserved hypothetical protein gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2069 CH60_207 CH60_207 CH60_207 206313 207053 - RNA 2'-O ribose methyltransferase substrate binding family protein [J] COG0566 rRNA methylases gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_207 CH60_2070 CH60_2070 CH60_2070 2223179 2223763 - hypothetical protein conserved hypothetical protein gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2070 CH60_2071 CH60_2071 CH60_2071 2223760 2224914 - glycosyl transferase 21 family protein gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2071 CH60_2072 CH60_2072 CH60_2072 2224914 2225876 - 3-beta hydroxysteroid dehydrogenase/isomerase family protein [MG] COG0451 Nucleoside-diphosphate-sugar epimerases gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2072 CH60_2073 CH60_2073 CH60_2073 2226010 2227296 - putative adenylate-forming enzyme [H] COG1541 Coenzyme F390 synthetase gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2073 CH60_2074 CH60_2074 CH60_2074 2227293 2228099 - metallo-beta-lactamase superfamily protein [R] COG0491 Zn-dependent hydrolases%2C including glyoxylases gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2074 CH60_2075 CH60_2075 CH60_2075 2228092 2229108 - 3-beta hydroxysteroid dehydrogenase/isomerase family protein [MG] COG0451 Nucleoside-diphosphate-sugar epimerases gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2075 CH60_2076 CH60_2076 CH60_2076 2229122 2229652 - 3-Oxoacyl-[acyl-carrier-(ACP)] synthase III family protein [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2076 CH60_2077 CH60_2077 CH60_2077 2229621 2230130 - hypothetical protein thiolase%2C N-terminal domain protein~[I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2077 CH60_2078 CH60_2078 CH60_2078 2230767 2232755 + chorismate binding enzyme family protein [EH] COG0147 Anthranilate/para-aminobenzoate synthases component I gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2078 CH60_2079 CH60_2079 CH60_2079 2232933 2233505 - hutD family protein [S] COG3758 Uncharacterized protein conserved in bacteria gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2079 CH60_208 CH60_208 rnr rnr 207172 209706 - ribonuclease R RNase_R: ribonuclease R~[K] COG0557 Exoribonuclease R gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_208 CH60_2080 CH60_2080 hutF hutF 2233505 2234875 - formiminoglutamate deiminase hutF: formiminoglutamate deiminase~[FR] COG0402 Cytosine deaminase and related metal-dependent hydrolases gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2080 CH60_2081 CH60_2081 CH60_2081 2235023 2235523 + UTRA domain protein [K] COG2188 Transcriptional regulators gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2081 CH60_2082 CH60_2082 CH60_2082 2235537 2235776 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2082 CH60_2083 CH60_2083 CH60_2083 2235815 2236558 + integrase core domain protein [L] COG4584 Transposase and inactivated derivatives gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2083 CH60_2084 CH60_2084 CH60_2084 2236558 2237337 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2084 CH60_2085 CH60_2085 CH60_2085 2237440 2237613 - hypothetical protein conserved hypothetical protein gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2085 CH60_2086 CH60_2086 CH60_2086 2237904 2238137 - hypothetical protein conserved hypothetical protein gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2086 CH60_2087 CH60_2087 CH60_2087 2238292 2239548 - patatin-like phospholipase family protein gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2087 CH60_2088 CH60_2088 CH60_2088 2239941 2240189 - hypothetical protein conserved hypothetical protein gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2088 CH60_2089 CH60_2089 CH60_2089 2240768 2240962 + hypothetical protein conserved hypothetical protein gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2089 CH60_209 CH60_209 nsrR nsrR 209947 210372 - HTH-type transcriptional repressor nsrR [K] COG1959 Predicted transcriptional regulator gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_209 CH60_2090 CH60_2090 alr alr 2241364 2242593 + alanine racemase alr: alanine racemase~[M] COG0787 Alanine racemase gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2090 CH60_2091 CH60_2091 CH60_2091 2242973 2244181 + transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2091 CH60_2092 CH60_2092 CH60_2092 2244535 2245488 - putative exported protein gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2092 CH60_2093 CH60_2093 CH60_2093 2245588 2246022 - hypothetical protein yadA-like C-terminal region family protein~[UW] COG5295 Autotransporter adhesin gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2093 CH60_2094 CH60_2094 CH60_2094 2246009 2248291 - coiled stalk of trimeric autotransporter adhesin family protein [UW] COG5295 Autotransporter adhesin gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2094 CH60_2095 CH60_2095 CH60_2095 2248648 2249412 - N-acetylmuramoyl-L-alanine amidase family protein [V] COG3023 Negative regulator of beta-lactamase expression gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2095 CH60_2096 CH60_2096 CH60_2096 2249983 2250627 - chemotaxis phosphatase%2C CheZ family protein [NT] COG3143 Chemotaxis protein gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2096 CH60_2097 CH60_2097 cheY cheY 2250637 2251026 - chemotaxis protein CheY [T] COG0784 FOG: CheY-like receiver gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2097 CH60_2098 CH60_2098 CH60_2098 2251127 2252176 - cheB methylesterase family protein [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2098 CH60_2099 CH60_2099 cheR cheR 2252176 2253048 - chemotaxis protein methyltransferase [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2099 CH60_21 CH60_21 CH60_21 25690 26817 + sugar diacid recognition family protein [KT] COG3835 Sugar diacid utilization regulator gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_21 CH60_210 CH60_210 purA purA 210741 212039 - adenylosuccinate synthase purA: adenylosuccinate synthase~[F] COG0104 Adenylosuccinate synthase gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_210 CH60_2100 CH60_2100 CH60_2100 2253221 2254831 - hypothetical protein conserved hypothetical protein~[NT] COG0840 Methyl-accepting chemotaxis protein gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2100 CH60_2101 CH60_2101 CH60_2101 2255015 2256688 - hypothetical protein conserved hypothetical protein~[NT] COG0840 Methyl-accepting chemotaxis protein gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2101 CH60_2102 CH60_2102 CH60_2102 2256929 2257600 - putative lipoprotein gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2102 CH60_2103 CH60_2103 CH60_2103 2257699 2260575 - hypothetical protein conserved hypothetical protein~[S] COG5373 Predicted membrane protein gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2103 CH60_2104 CH60_2104 CH60_2104 2261103 2264909 - outer membrane autotransporter barrel domain protein autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2104 CH60_2105 CH60_2105 CH60_2105 2265384 2266049 - HTH domain protein [S] COG2964 Uncharacterized protein conserved in bacteria gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2105 CH60_2106 CH60_2106 CH60_2106 2266239 2267225 + xylose isomerase-like TIM barrel family protein gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2106 CH60_2107 CH60_2107 CH60_2107 2267222 2267599 + rutC family protein rutC family protein PH0854~[J] COG0251 Putative translation initiation inhibitor%2C yjgF family gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2107 CH60_2108 CH60_2108 yihN yihN 2267612 2268847 + inner membrane protein yihN [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2108 CH60_2109 CH60_2109 CH60_2109 2269139 2269636 - cheW-like domain protein [NT] COG0835 Chemotaxis signal transduction protein gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2109 CH60_211 CH60_211 CH60_211 212139 212387 - hypothetical protein conserved hypothetical protein~[S] COG3242 Uncharacterized protein conserved in bacteria gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_211 CH60_2110 CH60_2110 CH60_2110 2269799 2271970 - signal transducing histidine kinase%2C homodimeric domain protein [NT] COG0643 Chemotaxis protein histidine kinase and related kinases gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2110 CH60_2111 CH60_2111 CH60_2111 2271981 2273264 - membrane MotB of proton-channel complex MotA/MotB family protein [N] COG1360 Flagellar motor protein gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2111 CH60_2112 CH60_2112 motA motA 2273261 2274148 - flagellar motor stator protein MotA motA1: flagellar motor stator protein MotA~[N] COG1291 Flagellar motor component gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2112 CH60_2113 CH60_2113 CH60_2113 2274353 2274934 - flagellar transcriptional activator family protein gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2113 CH60_2114 CH60_2114 CH60_2114 2275032 2275289 - flagellar transcriptional activator family protein gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2114 CH60_2115 CH60_2115 mgtA mgtA 2276477 2279176 - magnesium-translocating P-type ATPase ATPase-IIIB_Mg: magnesium-translocating P-type ATPase~[P] COG0474 Cation transport ATPase gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2115 CH60_2116 CH60_2116 CH60_2116 2279577 2280275 - mgtC family protein [S] COG1285 Uncharacterized membrane protein gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2116 CH60_2117 CH60_2117 CH60_2117 2281434 2282720 + hypothetical protein conserved hypothetical protein~[NT] COG0840 Methyl-accepting chemotaxis protein gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2117 CH60_2118 CH60_2118 CH60_2118 2282674 2283135 + methyl-accepting chemotaxis (MCP) signaling domain protein [NT] COG0840 Methyl-accepting chemotaxis protein gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2118 CH60_2119 CH60_2119 CH60_2119 2283318 2283509 - dextransucrase DSRB family protein gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2119 CH60_212 CH60_212 hflC hflC 212511 213515 - HflC protein hflC: HflC protein~[O] COG0330 Membrane protease subunits%2C stomatin/prohibitin homologs gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_212 CH60_2120 CH60_2120 cspE cspE 2283724 2283924 - RNA chaperone%2C negative regulator of cspA transcription [K] COG1278 Cold shock proteins gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2120 CH60_2121 CH60_2121 CH60_2121 2284477 2287659 + glycosyl hydrolases 2 family protein [G] COG3250 Beta-galactosidase/beta-glucuronidase gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2121 CH60_2122 CH60_2122 CH60_2122 2288066 2289076 + NAD(P)H quinone oxidoreductase%2C PIG3 family protein quinone_pig3: NAD(P)H quinone oxidoreductase%2C PIG3 family protein~[CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2122 CH60_2123 CH60_2123 CH60_2123 2289359 2289892 + inner membrane YlaC family protein gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2123 CH60_2124 CH60_2124 CH60_2124 2290398 2290847 + asnC-type helix-turn-helix domain protein [K] COG1522 Transcriptional regulators gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2124 CH60_2125 CH60_2125 CH60_2125 2290939 2291838 + 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase family protein gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2125 CH60_2126 CH60_2126 CH60_2126 2292141 2292344 + ydfZ family protein gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2126 CH60_2127 CH60_2127 appA appA 2292646 2293971 - periplasmic AppA protein gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2127 CH60_2128 CH60_2128 CH60_2128 2294183 2294275 + putative membrane protein gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2128 CH60_2129 CH60_2129 CH60_2129 2294503 2294910 - hxlR-like helix-turn-helix family protein [K] COG1733 Predicted transcriptional regulators gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2129 CH60_213 CH60_213 hflK hflK 213519 214778 - HflK protein hflK: HflK protein~[O] COG0330 Membrane protease subunits%2C stomatin/prohibitin homologs gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_213 CH60_2130 CH60_2130 CH60_2130 2295046 2295903 + 3-beta hydroxysteroid dehydrogenase/isomerase family protein [MG] COG0702 Predicted nucleoside-diphosphate-sugar epimerases gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2130 CH60_2131 CH60_2131 CH60_2131 2296823 2298403 + sensory box protein [NT] COG0840 Methyl-accepting chemotaxis protein gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2131 CH60_2132 CH60_2132 CH60_2132 2298523 2298783 + hypothetical protein conserved hypothetical protein gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2132 CH60_2133 CH60_2133 CH60_2133 2299059 2300102 + bacterial regulatory s%2C lacI family protein [K] COG1609 Transcriptional regulators gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2133 CH60_2134 CH60_2134 icd icd 2300248 2301501 - isocitrate dehydrogenase%2C NADP-dependent prok_nadp_idh: isocitrate dehydrogenase%2C NADP-dependent~[C] COG0538 Isocitrate dehydrogenases gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2134 CH60_2135 CH60_2135 CH60_2135 2301632 2302258 + pseudouridine synthase family protein [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2135 CH60_2136 CH60_2136 nudJ nudJ 2302251 2302697 + phosphatase nudJ [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2136 CH60_2137 CH60_2137 trmU trmU 2302884 2303999 + tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase~[J] COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase%2C contains the PP-loop ATPase domain gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2137 CH60_2138 CH60_2138 hflD hflD 2304057 2304683 + high frequency lysogenization protein hflD [R] COG2915 Uncharacterized protein involved in purine metabolism gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2138 CH60_2139 CH60_2139 purB purB 2304744 2306114 + adenylosuccinate lyase purB: adenylosuccinate lyase~[F] COG0015 Adenylosuccinate lyase gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2139 CH60_214 CH60_214 hflX hflX 215019 216305 - GTP-binding protein HflX GTP_HflX: GTP-binding protein HflX~[R] COG2262 GTPases gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_214 CH60_2140 CH60_2140 CH60_2140 2306302 2306925 + outer membrane beta-barrel domain protein gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2140 CH60_2141 CH60_2141 phoP phoP 2307136 2307807 + alkaline phosphatase synthesis transcriptional regulatory protein phoP [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2141 CH60_2142 CH60_2142 CH60_2142 2307861 2309267 + HAMP domain protein [T] COG0642 Signal transduction histidine kinase gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2142 CH60_2143 CH60_2143 CH60_2143 2309351 2310472 + cupin superfamily protein [S] COG2850 Uncharacterized conserved protein gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2143 CH60_2144 CH60_2144 pepT pepT 2310893 2312128 - peptidase T peptidase-T: peptidase T~[E] COG2195 Di- and tripeptidases gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2144 CH60_2145 CH60_2145 CH60_2145 2312458 2313294 - sir2 family protein [K] COG0846 NAD-dependent protein deacetylases%2C SIR2 family gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2145 CH60_2146 CH60_2146 CH60_2146 2313488 2314258 - glucokinase family protein [KG] COG1940 Transcriptional regulator/sugar kinase gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2146 CH60_2147 CH60_2147 lolE lolE 2314277 2315524 - liporeleasing system%2C transmembrane protein LolE lolE_release: liporeleasing system%2C transmembrane protein LolE~[M] COG4591 ABC-type transport system%2C involved in lipoprotein release%2C permease component gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2147 CH60_2148 CH60_2148 lolD lolD 2315524 2316228 - liporeleasing system%2C ATP-binding protein lolD_lipo_ex: liporeleasing system%2C ATP-binding protein~[V] COG1136 ABC-type antimicrobial peptide transport system%2C ATPase component gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2148 CH60_2149 CH60_2149 lolC lolC 2316221 2317423 - lipo-releasing system transmembrane protein lolC [M] COG4591 ABC-type transport system%2C involved in lipoprotein release%2C permease component gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2149 CH60_215 CH60_215 hfq hfq 216404 216709 - RNA chaperone Hfq hfq: RNA chaperone Hfq~[R] COG1923 Uncharacterized host factor I protein gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_215 CH60_2150 CH60_2150 mfd mfd 2317693 2321139 + transcription-repair coupling factor mfd: transcription-repair coupling factor~[LK] COG1197 Transcription-repair coupling factor (superfamily II helicase) gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2150 CH60_2151 CH60_2151 CH60_2151 2321378 2321917 - glycine zipper 2TM domain protein [S] COG3134 Predicted outer membrane lipoprotein gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2151 CH60_2152 CH60_2152 CH60_2152 2322247 2322687 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2152 CH60_2153 CH60_2153 CH60_2153 2322774 2323454 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2153 CH60_2154 CH60_2154 CH60_2154 2323550 2323963 - hypothetical protein conserved hypothetical protein gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2154 CH60_2155 CH60_2155 CH60_2155 2323971 2324369 - hypothetical protein conserved hypothetical protein gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2155 CH60_2156 CH60_2156 CH60_2156 2325078 2326382 - pyridine nucleotide-disulfide oxidoreductase family protein [C] COG1252 NADH dehydrogenase%2C FAD-containing subunit gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2156 CH60_2157 CH60_2157 CH60_2157 2326757 2327299 - hypothetical protein conserved hypothetical protein~[R] COG3150 Predicted esterase gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2157 CH60_2158 CH60_2158 nagZ nagZ 2327427 2328458 - beta-hexosaminidase [G] COG1472 Beta-glucosidase-related glycosidases gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2158 CH60_2159 CH60_2159 thiK thiK 2328529 2329335 - thiamine kinase ycfN_thiK: thiamine kinase~[M] COG0510 Predicted choline kinase involved in LPS biosynthesis gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2159 CH60_216 CH60_216 miaA miaA 216825 217766 - tRNA dimethylallyltransferase miaA: tRNA dimethylallyltransferase~[J] COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_216 CH60_2160 CH60_2160 CH60_2160 2329376 2329951 - hypothetical protein conserved hypothetical protein~[R] COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family) gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2160 CH60_2161 CH60_2161 CH60_2161 2329992 2330381 - hypothetical protein conserved hypothetical protein~[R] COG5633 Predicted periplasmic lipoprotein gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2161 CH60_2162 CH60_2162 CH60_2162 2330416 2330769 - HIT domain protein [FGR] COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2162 CH60_2163 CH60_2163 CH60_2163 2330943 2331761 - shikimate dehydrogenase substrate binding domain protein [E] COG0169 Shikimate 5-dehydrogenase gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2163 CH60_2164 CH60_2164 CH60_2164 2332204 2332662 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2164 CH60_2165 CH60_2165 ptsG ptsG 2332852 2334285 - PTS system glucose-specific EIICB component [G] COG1263 Phosphotransferase system IIC components%2C glucose/maltose/N-acetylglucosamine-specific gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2165 CH60_2166 CH60_2166 CH60_2166 2334591 2335400 - hydrolase%2C TatD family protein [L] COG0084 Mg-dependent DNase gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2166 CH60_2167 CH60_2167 holB holB 2335415 2336437 - DNA polymerase III%2C delta' subunit holB: DNA polymerase III%2C delta' subunit~[L] COG0470 ATPase involved in DNA replication gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2167 CH60_2168 CH60_2168 tmk tmk 2336437 2337075 - dTMP kinase DTMP_kinase: dTMP kinase~[F] COG0125 Thymidylate kinase gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2168 CH60_2169 CH60_2169 CH60_2169 2337065 2338090 - yceG-like family protein [R] COG1559 Predicted periplasmic solute-binding protein gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2169 CH60_217 CH60_217 mutL mutL 217759 219666 - DNA mismatch repair MutL family protein mutl: DNA mismatch repair MutL family protein~[L] COG0323 DNA mismatch repair enzyme (predicted ATPase) gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_217 CH60_2170 CH60_2170 pabC pabC 2338379 2339185 - aminodeoxychorismate lyase pabC_Proteo: aminodeoxychorismate lyase~[EH] COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2170 CH60_2171 CH60_2171 CH60_2171 2339601 2340059 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2171 CH60_2172 CH60_2172 fabF fabF 2340259 2341500 - beta-ketoacyl-acyl-carrier-protein synthase II fabF: beta-ketoacyl-acyl-carrier-protein synthase II~[IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2172 CH60_2173 CH60_2173 acpP acpP 2341595 2341831 - acyl carrier protein acyl_carrier: acyl carrier protein~[IQ] COG0236 Acyl carrier protein gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2173 CH60_2174 CH60_2174 fabG fabG 2341985 2342719 - 3-oxoacyl-[acyl-carrier-protein] reductase 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase~[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2174 CH60_2175 CH60_2175 fabD fabD 2342733 2343662 - malonyl CoA-acyl carrier protein transacylase fabD: malonyl CoA-acyl carrier protein transacylase~[I] COG0331 (acyl-carrier-protein) S-malonyltransferase gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2175 CH60_2176 CH60_2176 fabH fabH 2343700 2344650 - 3-oxoacyl-[acyl-carrier-] synthase III family protein fabH: 3-oxoacyl-[acyl-carrier-] synthase III family protein~[I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2176 CH60_2177 CH60_2177 plsX plsX 2344657 2345661 - fatty acid/phospholipid synthesis protein PlsX plsX: fatty acid/phospholipid synthesis protein PlsX~[I] COG0416 Fatty acid/phospholipid biosynthesis enzyme gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2177 CH60_2178 CH60_2178 rpmF rpmF 2345725 2345892 - ribosomal protein L32 rpmF_bact: ribosomal protein L32~[J] COG0333 Ribosomal protein L32 gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2178 CH60_2179 CH60_2179 CH60_2179 2345905 2346429 - hypothetical protein conserved hypothetical protein~[R] COG1399 Predicted metal-binding%2C possibly nucleic acid-binding protein gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2179 CH60_218 CH60_218 CH60_218 219682 221595 - N-acetylmuramoyl-L-alanine amidase family protein [M] COG0860 N-acetylmuramoyl-L-alanine amidase gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_218 CH60_2180 CH60_2180 maf maf 2346571 2347167 + septum formation protein Maf maf: septum formation protein Maf~[D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2180 CH60_2181 CH60_2181 CH60_2181 2347290 2348252 - pseudouridine synthase%2C RluA family protein rluA_subfam: pseudouridine synthase%2C RluA family protein~[J] COG0564 Pseudouridylate synthases%2C 23S RNA-specific gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2181 CH60_2182 CH60_2182 CH60_2182 2348827 2352492 + ribonuclease%2C Rne/Rng family domain protein RNaseEG: ribonuclease%2C Rne/Rng family domain protein~[J] COG1530 Ribonucleases G and E gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2182 CH60_2183 CH60_2183 CH60_2183 2352750 2353037 - antibiotic biosynthesis monooxygenase family protein [S] COG1359 Uncharacterized conserved protein gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2183 CH60_2184 CH60_2184 pyrC pyrC 2353272 2354318 + dihydroorotase%2C homodimeric type pyrC_dimer: dihydroorotase%2C homodimeric type~[F] COG0418 Dihydroorotase gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2184 CH60_2185 CH60_2185 CH60_2185 2354631 2354876 + dinI-like family protein gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2185 CH60_2186 CH60_2186 CH60_2186 2355641 2356849 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2186 CH60_2187 CH60_2187 CH60_2187 2355382 2355678 + bssS family protein gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2187 CH60_2188 CH60_2188 solA solA 2357210 2358325 + N-methyl-L-tryptophan oxidase [E] COG0665 Glycine/D-amino acid oxidases (deaminating) gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2188 CH60_2189 CH60_2189 CH60_2189 2358592 2359206 + bacterial regulatory s%2C luxR family protein [K] COG2771 DNA-binding HTH domain-containing proteins gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2189 CH60_219 CH60_219 CH60_219 221603 222073 - tRNA threonylcarbamoyl adenosine modification protein YjeE T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE~[R] COG0802 Predicted ATPase or kinase gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_219 CH60_2190 CH60_2190 CH60_2190 2359778 2360836 - hypothetical protein conserved hypothetical protein~[R] COG0628 Predicted permease gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2190 CH60_2191 CH60_2191 CH60_2191 2360985 2362052 - rhodanese-like domain protein [R] COG1054 Predicted sulfurtransferase gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2191 CH60_2192 CH60_2192 CH60_2192 2362411 2362575 - putative membrane protein gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2192 CH60_2193 CH60_2193 CH60_2193 2363103 2363780 - eamA-like transporter family protein [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2193 CH60_2194 CH60_2194 CH60_2194 2364848 2365585 - bacterial regulatory s%2C luxR family protein [K] COG2771 DNA-binding HTH domain-containing proteins gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2194 CH60_2195 CH60_2195 esaI esaI 2364211 2364855 + acyl-homoserine-lactone synthase [TQ] COG3916 N-acyl-L-homoserine lactone synthetase gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2195 CH60_2196 CH60_2196 CH60_2196 2366072 2366998 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2196 CH60_2197 CH60_2197 CH60_2197 2367113 2367322 - hypothetical protein conserved hypothetical protein gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2197 CH60_2198 CH60_2198 CH60_2198 2367446 2368804 + sugar (and other) transporter family protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2198 CH60_2199 CH60_2199 fae fae 2368851 2369354 + formaldehyde-activating enzyme one_C_fae: formaldehyde-activating enzyme~[S] COG1795 Uncharacterized conserved protein gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2199 CH60_22 CH60_22 CH60_22 26995 28263 + citrate transporter family protein [GE] COG2610 H+/gluconate symporter and related permeases gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_22 CH60_220 CH60_220 CH60_220 222084 223598 - hypothetical protein conserved hypothetical protein~[G] COG0063 Predicted sugar kinase gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_220 CH60_2200 CH60_2200 CH60_2200 2369365 2370384 + aldo/keto reductase family protein [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2200 CH60_2201 CH60_2201 cas6f cas6f 2370462 2371016 - CRISPR-associated endoribonuclease Cas6/Csy4%2C subtype I-F/YPEST cas_Csy4: CRISPR-associated endoribonuclease Cas6/Csy4%2C subtype I-F/YPEST gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2201 CH60_2202 CH60_2202 csy3 csy3 2371027 2372031 - CRISPR type I-F/YPEST-associated protein Csy3 cas_Csy3: CRISPR type I-F/YPEST-associated protein Csy3 gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2202 CH60_2203 CH60_2203 csy2 csy2 2372049 2372999 - CRISPR type I-F/YPEST-associated protein Csy2 cas_Csy2: CRISPR type I-F/YPEST-associated protein Csy2 gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2203 CH60_2204 CH60_2204 csy1 csy1 2372996 2374342 - CRISPR type I-F/YPEST-associated protein Csy1 cas_Csy1: CRISPR type I-F/YPEST-associated protein Csy1 gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2204 CH60_2205 CH60_2205 cas3f cas3f 2374751 2378038 - CRISPR-associated helicase Cas3%2C subtype I-F/YPEST cas3_yersinia: CRISPR-associated helicase Cas3%2C subtype I-F/YPEST~[R] COG1203 Predicted helicases gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2205 CH60_2206 CH60_2206 cas1 cas1 2378035 2379015 - CRISPR-associated endonuclease Cas1 cas1: CRISPR-associated endonuclease Cas1~[L] COG1518 Uncharacterized protein predicted to be involved in DNA repair gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2206 CH60_2207 CH60_2207 CH60_2207 2379918 2381162 + mechanosensitive ion channel family protein [M] COG0668 Small-conductance mechanosensitive channel gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2207 CH60_2208 CH60_2208 CH60_2208 2381737 2383011 - putative exported protein gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2208 CH60_2209 CH60_2209 CH60_2209 2383050 2384165 - putative exported protein gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2209 CH60_221 CH60_221 queG queG 223759 224832 + epoxyqueuosine reductase [C] COG1600 Uncharacterized Fe-S protein gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_221 CH60_2210 CH60_2210 CH60_2210 2384288 2385223 - hypothetical protein conserved hypothetical protein gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2210 CH60_2211 CH60_2211 CH60_2211 2385253 2386308 - hypothetical protein conserved hypothetical protein~[G] COG2152 Predicted glycosylase gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2211 CH60_2212 CH60_2212 CH60_2212 2386455 2387279 - binding--dependent transport system inner membrane component family protein [G] COG0395 ABC-type sugar transport system%2C permease component gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2212 CH60_2213 CH60_2213 CH60_2213 2387280 2388155 - binding--dependent transport system inner membrane component family protein [G] COG1175 ABC-type sugar transport systems%2C permease components gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2213 CH60_2214 CH60_2214 CH60_2214 2388264 2389550 - bacterial extracellular solute-binding family protein [G] COG1653 ABC-type sugar transport system%2C periplasmic component gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2214 CH60_2215 CH60_2215 CH60_2215 2389822 2390862 + bacterial regulatory s%2C lacI family protein [K] COG1609 Transcriptional regulators gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2215 CH60_2216 CH60_2216 CH60_2216 2390879 2392267 + phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain III family protein [G] COG1109 Phosphomannomutase gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2216 CH60_2217 CH60_2217 CH60_2217 2392413 2392871 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2217 CH60_2218 CH60_2218 CH60_2218 2393077 2394156 + ABC transporter family protein [G] COG3839 ABC-type sugar transport systems%2C ATPase components gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2218 CH60_2219 CH60_2219 CH60_2219 2394421 2394951 - putative exported protein gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2219 CH60_222 CH60_222 CH60_222 225144 225219 - tRNA-Gly tRNA gene220 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_222 CH60_2220 CH60_2220 CH60_2220 2395224 2395616 - hypothetical protein conserved hypothetical protein gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2220 CH60_2221 CH60_2221 CH60_2221 2395776 2396180 - hypothetical protein conserved hypothetical protein gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2221 CH60_2222 CH60_2222 CH60_2222 2396322 2396489 - hypothetical protein conserved hypothetical protein gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2222 CH60_2223 CH60_2223 CH60_2223 2396692 2396889 - hypothetical protein conserved hypothetical protein gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2223 CH60_2224 CH60_2224 CH60_2224 2396899 2404641 - hypothetical protein adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein~[U] COG3210 Large exoproteins involved in heme utilization or adhesion gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2224 CH60_2225 CH60_2225 CH60_2225 2404797 2406485 - surface antigen family protein [U] COG2831 Hemolysin activation/secretion protein gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2225 CH60_2226 CH60_2226 CH60_2226 2407138 2408103 - 2Fe-2S iron-sulfur cluster binding domain protein [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2226 CH60_2227 CH60_2227 CH60_2227 2408199 2409323 - ring hydroxylating alpha subunit family protein [PR] COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases%2C large terminal subunit gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2227 CH60_2228 CH60_2228 CH60_2228 2409440 2411086 - transporter%2C betaine/carnitine/choline transporter family protein bcct: transporter%2C betaine/carnitine/choline transporter family protein~[M] COG1292 Choline-glycine betaine transporter gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2228 CH60_2229 CH60_2229 CH60_2229 2411703 2412788 - tartrate dehydrogenase TTC: tartrate dehydrogenase~[CE] COG0473 Isocitrate/isopropylmalate dehydrogenase gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2229 CH60_2230 CH60_2230 CH60_2230 2412891 2413832 + bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2230 CH60_2231 CH60_2231 CH60_2231 2414079 2415083 + bacterial regulatory s%2C lacI family protein [K] COG1609 Transcriptional regulators gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2231 CH60_2232 CH60_2232 CH60_2232 2415216 2416208 - branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2232 CH60_2233 CH60_2233 CH60_2233 2416205 2417695 - ABC transporter family protein [G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2233 CH60_2234 CH60_2234 CH60_2234 2417735 2418652 - periplasmic binding domain protein [G] COG1879 ABC-type sugar transport system%2C periplasmic component gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2234 CH60_2235 CH60_2235 CH60_2235 2418827 2419894 - zinc-binding dehydrogenase family protein [ER] COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2235 CH60_2236 CH60_2236 CH60_2236 2420636 2421304 - hypothetical protein conserved hypothetical protein gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2236 CH60_2237 CH60_2237 CH60_2237 2421500 2422042 - hypothetical protein conserved hypothetical protein gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2237 CH60_2238 CH60_2238 CH60_2238 2422280 2423218 - cation diffusion facilitator transporter family protein CDF: cation diffusion facilitator transporter family protein~[P] COG3965 Predicted Co/Zn/Cd cation transporters gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2238 CH60_2239 CH60_2239 ompX ompX 2423534 2424058 - outer membrane protein X [M] COG3637 Opacity protein and related surface antigens gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2239 CH60_224 CH60_224 CH60_224 225311 225386 - tRNA-Gly tRNA gene221 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_224 CH60_2240 CH60_2240 CH60_2240 2424463 2425350 + eamA-like transporter family protein [R] COG5006 Predicted permease%2C DMT superfamily gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2240 CH60_2241 CH60_2241 CH60_2241 2425366 2425863 + acetyltransferase domain protein [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2241 CH60_2242 CH60_2242 CH60_2242 2425886 2426662 + methyltransferase domain protein [R] COG4106 Trans-aconitate methyltransferase gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2242 CH60_2243 CH60_2243 dps dps 2426919 2427422 + DNA protection during starvation protein [P] COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2243 CH60_2244 CH60_2244 CH60_2244 2427742 2428869 + tetratricopeptide repeat family protein [S] COG1434 Uncharacterized conserved protein gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2244 CH60_2245 CH60_2245 CH60_2245 2429439 2430182 + bacterial extracellular solute-binding s%2C 3 family protein [ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2245 CH60_2246 CH60_2246 CH60_2246 2430217 2430873 + amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG0765 ABC-type amino acid transport system%2C permease component gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2246 CH60_2247 CH60_2247 CH60_2247 2430870 2431592 + ABC transporter family protein [E] COG1126 ABC-type polar amino acid transport system%2C ATPase component gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2247 CH60_2248 CH60_2248 CH60_2248 2431832 2433124 - sensory box protein [T] COG2202 FOG: PAS/PAC domain gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2248 CH60_2249 CH60_2249 CH60_2249 2433893 2434858 - hypothetical protein conserved hypothetical protein~[R] COG3129 Predicted SAM-dependent methyltransferase gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2249 CH60_225 CH60_225 orn orn 225944 226489 - oligoribonuclease [A] COG1949 Oligoribonuclease (3'->5' exoribonuclease) gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_225 CH60_2250 CH60_2250 CH60_2250 2435191 2435451 + hypothetical protein conserved hypothetical protein gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2250 CH60_2251 CH60_2251 CH60_2251 2435833 2436792 - glycosyl transferase family%2C a/b domain protein [E] COG0547 Anthranilate phosphoribosyltransferase gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2251 CH60_2252 CH60_2252 menE menE 2436858 2438273 - O-succinylbenzoate-CoA ligase menE: O-succinylbenzoate-CoA ligase~[IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2252 CH60_2253 CH60_2253 menC menC 2438261 2439232 - o-succinylbenzoate synthase menC_gamma/gm+: o-succinylbenzoate synthase~[H] COG1441 O-succinylbenzoate synthase gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2253 CH60_2254 CH60_2254 menB menB 2439232 2440089 - naphthoate synthase menB: naphthoate synthase~[H] COG0447 Dihydroxynaphthoic acid synthase gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2254 CH60_2255 CH60_2255 menH menH 2440103 2440921 - 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase menH_SHCHC: 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase~[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2255 CH60_2256 CH60_2256 menD menD 2440918 2442621 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase~[H] COG1165 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2256 CH60_2257 CH60_2257 menF menF 2442849 2444216 - isochorismate hydroxymutase 2 [HQ] COG1169 Isochorismate synthase gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2257 CH60_2258 CH60_2258 CH60_2258 2444744 2445388 - putative protein RhiA gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2258 CH60_2259 CH60_2259 CH60_2259 2445943 2446251 - hypothetical protein conserved hypothetical protein~[S] COG4575 Uncharacterized conserved protein gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2259 CH60_226 CH60_226 rsgA rsgA 226689 227741 + ribosome small subunit-dependent GTPase A [R] COG1162 Predicted GTPases gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_226 CH60_2260 CH60_2260 CH60_2260 2446815 2446958 + putative membrane protein gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2260 CH60_2261 CH60_2261 edd edd 2447177 2449048 - phosphogluconate dehydratase edd: phosphogluconate dehydratase~[EG] COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2261 CH60_2262 CH60_2262 CH60_2262 2449058 2449572 - hypothetical protein pseudogene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2262 CH60_2264 CH60_2264 CH60_2264 2449602 2450918 - sugar (and other) transporter family protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2264 CH60_2265 CH60_2265 CH60_2265 2451464 2452414 - D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain protein [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2265 CH60_2266 CH60_2266 CH60_2266 2452880 2453872 - bacterial regulatory s%2C lacI family protein [K] COG1609 Transcriptional regulators gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2266 CH60_2267 CH60_2267 CH60_2267 2454341 2455624 + glycosyl hydrolase like GH101 family protein [S] COG1649 Uncharacterized protein conserved in bacteria gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2267 CH60_2268 CH60_2268 CH60_2268 2456383 2457147 + short chain dehydrogenase family protein [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2268 CH60_2269 CH60_2269 CH60_2269 2457196 2457732 + carbohydrate kinase%2C thermoresistant glucokinase family protein therm_gnt_kin: carbohydrate kinase%2C thermoresistant glucokinase family protein~[G] COG3265 Gluconate kinase gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2269 CH60_227 CH60_227 psd psd 228066 228947 + phosphatidylserine decarboxylase PS_decarb: phosphatidylserine decarboxylase~[I] COG0688 Phosphatidylserine decarboxylase gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_227 CH60_2270 CH60_2270 CH60_2270 2457810 2458277 + yhcH/YjgK/YiaL family protein [G] COG2731 Beta-galactosidase%2C beta subunit gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2270 CH60_2271 CH60_2271 CH60_2271 2458622 2459812 - hypothetical protein conserved hypothetical protein gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2271 CH60_2272 CH60_2272 CH60_2272 2460048 2461511 - proton-translocating NADH-quinone oxidoreductase%2C chain N family protein NDH_I_N: proton-translocating NADH-quinone oxidoreductase%2C chain N family protein~[C] COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2272 CH60_2273 CH60_2273 nuoM nuoM 2461518 2463050 - NADH-quinone oxidoreductase subunit M [C] COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2273 CH60_2274 CH60_2274 CH60_2274 2463090 2464934 - proton-translocating NADH-quinone oxidoreductase%2C chain L family protein NDH_I_L: proton-translocating NADH-quinone oxidoreductase%2C chain L family protein~[CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter%2C MnhA subunit gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2274 CH60_2275 CH60_2275 nuoK nuoK 2464931 2465233 - NADH-quinone oxidoreductase subunit K [C] COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2275 CH60_2276 CH60_2276 nuoJ nuoJ 2465230 2465775 - NADH-quinone oxidoreductase subunit J [C] COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2276 CH60_2277 CH60_2277 CH60_2277 2465788 2466330 - NADH-quinone oxidoreductase%2C chain I family protein nuoI: NADH-quinone oxidoreductase%2C chain I family protein~[C] COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2277 CH60_2278 CH60_2278 nuoH nuoH 2466345 2467322 - NADH-quinone oxidoreductase subunit H [C] COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2278 CH60_2279 CH60_2279 nuoG nuoG 2467319 2470063 - NADH dehydrogenase (quinone)%2C G subunit nuoG: NADH dehydrogenase (quinone)%2C G subunit~[C] COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2279 CH60_228 CH60_228 CH60_228 228989 232330 + mechanosensitive ion channel family protein [M] COG3264 Small-conductance mechanosensitive channel gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_228 CH60_2280 CH60_2280 nuoF nuoF 2470150 2471535 - NADH oxidoreductase (quinone)%2C F subunit nuoF_fam: NADH oxidoreductase (quinone)%2C F subunit~[C] COG1894 NADH:ubiquinone oxidoreductase%2C NADH-binding (51 kD) subunit gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2280 CH60_2281 CH60_2281 nuoE nuoE 2471532 2472095 - NADH-quinone oxidoreductase subunit E [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2281 CH60_2282 CH60_2282 nuoD nuoD 2472098 2473894 - NADH dehydrogenase (quinone)%2C D subunit nuoD: NADH dehydrogenase (quinone)%2C D subunit~[C] COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2282 CH60_2283 CH60_2283 nuoB nuoB 2474035 2474712 - NADH-quinone oxidoreductase subunit B [C] COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2283 CH60_2284 CH60_2284 CH60_2284 2474814 2475314 - NADH-ubiquinone/plastoquinone oxidoreductase%2C chain 3 family protein [C] COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A) gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2284 CH60_2285 CH60_2285 lrhA lrhA 2475992 2476936 - transcriptional regulator LrhA [K] COG0583 Transcriptional regulator gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2285 CH60_2286 CH60_2286 CH60_2286 2477792 2479006 + aminotransferase class I and II family protein [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2286 CH60_2287 CH60_2287 CH60_2287 2479157 2479750 + HD domain protein [R] COG1896 Predicted hydrolases of HD superfamily gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2287 CH60_2288 CH60_2288 CH60_2288 2480093 2481925 - trkA-C domain protein [P] COG0471 Di- and tricarboxylate transporters gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2288 CH60_2289 CH60_2289 CH60_2289 2482217 2482873 - HAD hydrolase%2C IA%2C variant 3 family protein HAD-SF-IA-v3: HAD hydrolase%2C IA%2C variant 3 family protein~[R] COG0637 Predicted phosphatase/phosphohexomutase gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2289 CH60_229 CH60_229 CH60_229 232451 233428 - EF-P lysine aminoacylase GenX genX: EF-P lysine aminoacylase GenX~[J] COG2269 Truncated%2C possibly inactive%2C lysyl-tRNA synthetase (class II) gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_229 CH60_2290 CH60_2290 CH60_2290 2483038 2483532 - hypothetical protein conserved hypothetical protein~[S] COG3013 Uncharacterized conserved protein gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2290 CH60_2291 CH60_2291 CH60_2291 2483840 2484295 - hypothetical protein conserved hypothetical protein~[S] COG3092 Uncharacterized protein conserved in bacteria gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2291 CH60_2292 CH60_2292 ackA ackA 2484717 2485919 + acetate kinase ackA: acetate kinase~[C] COG0282 Acetate kinase gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2292 CH60_2293 CH60_2293 pta pta 2486087 2488240 + phosphate acetyltransferase pta: phosphate acetyltransferase~[C] COG0280 Phosphotransacetylase gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2293 CH60_2294 CH60_2294 CH60_2294 2488506 2489540 - putative transcriptional regulator [K] COG1609 Transcriptional regulators gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2294 CH60_2295 CH60_2295 ptsN1 ptsN1 2489907 2490350 + phosphotransferase enzyme II%2C A component [GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2295 CH60_2296 CH60_2296 CH60_2296 2490519 2490761 + PTS system%2C Lactose/Cellobiose specific IIB subunit [G] COG3414 Phosphotransferase system%2C galactitol-specific IIB component gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2296 CH60_2297 CH60_2297 CH60_2297 2490783 2491991 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2297 CH60_2298 CH60_2298 CH60_2298 2492142 2492510 + PTS system sugar-specific permease component family protein [S] COG3037 Uncharacterized protein conserved in bacteria gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2298 CH60_2299 CH60_2299 CH60_2299 2492558 2493765 + transposase%2C Mutator family protein pseudogene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2299 CH60_23 CH60_23 CH60_23 28274 29410 + glycerate kinase family protein [G] COG1929 Glycerate kinase gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_23 CH60_230 CH60_230 frdA frdA 233886 235709 + fumarate reductase%2C flavoprotein subunit fum_red_Fp: fumarate reductase%2C flavoprotein subunit~[C] COG1053 Succinate dehydrogenase/fumarate reductase%2C flavoprotein subunit gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_230 CH60_2301 CH60_2301 CH60_2301 2493857 2494720 + PTS system sugar-specific permease component family protein [S] COG3037 Uncharacterized protein conserved in bacteria gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2301 CH60_2302 CH60_2302 CH60_2302 2494837 2495385 - NUDIX domain protein [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2302 CH60_2303 CH60_2303 CH60_2303 2495607 2496194 - phosphodiesterase%2C family protein yfcE: phosphodiesterase%2C MJ0936 family protein~[R] COG0622 Predicted phosphoesterase gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2303 CH60_2304 CH60_2304 CH60_2304 2496382 2497074 - EAL domain protein [T] COG2200 FOG: EAL domain gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2304 CH60_2305 CH60_2305 CH60_2305 2497428 2498336 + rmlD substrate binding domain protein [R] COG1090 Predicted nucleoside-diphosphate sugar epimerase gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2305 CH60_2306 CH60_2306 CH60_2306 2498460 2499257 - ABC transporter family protein [E] COG4598 ABC-type histidine transport system%2C ATPase component gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2306 CH60_2307 CH60_2307 hisM hisM 2499271 2499987 - histidine transport system permease protein hisM [E] COG4160 ABC-type arginine/histidine transport system%2C permease component gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2307 CH60_2308 CH60_2308 CH60_2308 2499984 2500670 - amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG4215 ABC-type arginine transport system%2C permease component gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2308 CH60_2309 CH60_2309 hisJ hisJ 2500773 2501555 - histidine-binding periplasmic protein [ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2309 CH60_231 CH60_231 CH60_231 235702 236436 + succinate dehydrogenase and fumarate reductase iron-sulfur family protein dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur family protein~[C] COG0479 Succinate dehydrogenase/fumarate reductase%2C Fe-S protein subunit gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_231 CH60_2310 CH60_2310 CH60_2310 2502080 2502652 - polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein~[H] COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2310 CH60_2311 CH60_2311 purF purF 2502899 2504416 - amidophosphoribosyltransferase purF: amidophosphoribosyltransferase~[F] COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2311 CH60_2312 CH60_2312 CH60_2312 2504429 2504938 - colicin V production family protein [R] COG1286 Uncharacterized membrane protein%2C required for colicin V production gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2312 CH60_2313 CH60_2313 CH60_2313 2505250 2505972 - sporulation related domain protein [S] COG3147 Uncharacterized protein conserved in bacteria gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2313 CH60_2314 CH60_2314 folC folC 2506092 2507396 - bifunctional FolC family protein folC: bifunctional FolC family protein~[H] COG0285 Folylpolyglutamate synthase gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2314 CH60_2315 CH60_2315 accD accD 2507645 2508559 - acetyl-CoA carboxylase%2C carboxyl transferase%2C beta subunit accD: acetyl-CoA carboxylase%2C carboxyl transferase%2C beta subunit~[I] COG0777 Acetyl-CoA carboxylase beta subunit gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2315 CH60_2316 CH60_2316 CH60_2316 2508790 2509452 - hypothetical protein conserved hypothetical protein~[S] COG0586 Uncharacterized membrane-associated protein gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2316 CH60_2317 CH60_2317 truA truA 2509609 2510403 - tRNA pseudouridine(38-40) synthase hisT_truA: tRNA pseudouridine(38-40) synthase~[J] COG0101 Pseudouridylate synthase gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2317 CH60_2318 CH60_2318 CH60_2318 2510490 2511500 - semialdehyde dehydrogenase%2C dimerization domain protein [E] COG0136 Aspartate-semialdehyde dehydrogenase gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2318 CH60_2319 CH60_2319 pdxB pdxB 2511670 2512797 - erythronate-4-phosphate dehydrogenase [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2319 CH60_232 CH60_232 frdC frdC 236453 236845 + fumarate reductase subunit C [C] COG3029 Fumarate reductase subunit C gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_232 CH60_2320 CH60_2320 CH60_2320 2512844 2513629 - helix-turn-helix domain protein [K] COG2207 AraC-type DNA-binding domain-containing proteins gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2320 CH60_2321 CH60_2321 CH60_2321 2513855 2514772 + eamA-like transporter family protein [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2321 CH60_2322 CH60_2322 CH60_2322 2515057 2516094 + putative flagellar assembly regulatory protein%2CFlk gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2322 CH60_2323 CH60_2323 smfA smfA 2516436 2516966 - fimbria A protein [NU] COG3539 P pilus assembly protein%2C pilin FimA gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2323 CH60_2324 CH60_2324 CH60_2324 2517757 2518449 + aspartate racemase family protein asp_race: aspartate racemase family protein~[M] COG1794 Aspartate racemase gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2324 CH60_2325 CH60_2325 fabB fabB 2518857 2520080 - 3-oxoacyl-[acyl-carrier-protein] synthase 1 [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2325 CH60_2326 CH60_2326 mnmC mnmC 2520252 2522321 + tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC mnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC%2C C-terminal domain~[S] COG4121 Uncharacterized conserved protein gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2326 CH60_2327 CH60_2327 CH60_2327 2522499 2522777 - yfcL family protein gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2327 CH60_2328 CH60_2328 CH60_2328 2522835 2523377 - hypothetical protein conserved hypothetical protein~[S] COG3101 Uncharacterized protein conserved in bacteria gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2328 CH60_2329 CH60_2329 CH60_2329 2523477 2524283 - hypothetical protein conserved hypothetical protein~[R] COG0730 Predicted permeases gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2329 CH60_233 CH60_233 frdD frdD 236862 237218 + fumarate reductase subunit D [C] COG3080 Fumarate reductase subunit D gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_233 CH60_2330 CH60_2330 CH60_2330 2524287 2525084 - penicillin-insensitive murein endopeptidase family protein [M] COG3770 Murein endopeptidase gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2330 CH60_2331 CH60_2331 aroC aroC 2525120 2526205 - chorismate synthase aroC: chorismate synthase~[E] COG0082 Chorismate synthase gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2331 CH60_2332 CH60_2332 prmB prmB 2526282 2527214 - (glutamine-N5) methyltransferase%2C ribosomal protein L3-specific L3_gln_methyl: -(glutamine-N5) methyltransferase%2C ribosomal protein L3-specific~[J] COG2890 Methylase of polypeptide chain release factors gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2332 CH60_2333 CH60_2333 CH60_2333 2527584 2528114 + smr domain protein [S] COG2840 Uncharacterized protein conserved in bacteria gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2333 CH60_2334 CH60_2334 sixA sixA 2528524 2529015 - phosphohistidine phosphatase SixA sixA: phosphohistidine phosphatase SixA~[T] COG2062 Phosphohistidine phosphatase SixA gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2334 CH60_2335 CH60_2335 fadJ fadJ 2529583 2531907 - fatty oxidation complex%2C alpha subunit FadJ fadJ: fatty oxidation complex%2C alpha subunit FadJ~[I] COG1024 Enoyl-CoA hydratase/carnithine racemase gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2335 CH60_2336 CH60_2336 fadI fadI 2531907 2533217 - acetyl-CoA C-acyltransferase FadI fadI: acetyl-CoA C-acyltransferase FadI~[I] COG0183 Acetyl-CoA acetyltransferase gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2336 CH60_2337 CH60_2337 CH60_2337 2533504 2533800 - hypothetical protein conserved hypothetical family protein~[S] COG3691 Uncharacterized protein conserved in bacteria gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2337 CH60_2338 CH60_2338 CH60_2338 2534214 2535479 + outer membrane transport family protein [I] COG2067 Long-chain fatty acid transport protein gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2338 CH60_2339 CH60_2339 CH60_2339 2535586 2536350 - putative phospholipid-binding lipoprotein mlaA [M] COG2853 Surface lipoprotein gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2339 CH60_234 CH60_234 sugE sugE 237383 237697 - quaternary ammonium compound-resistance protein sugE [P] COG2076 Membrane transporters of cations and cationic drugs gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_234 CH60_2340 CH60_2340 ccmI ccmI 2536386 2537612 - cytochrome c-type biogenesis protein CcmI cytochro_ccmI: cytochrome c-type biogenesis protein CcmI~[O] COG4235 Cytochrome c biogenesis factor gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2340 CH60_2341 CH60_2341 CH60_2341 2537612 2538124 - cytochrome C biogenesis family protein [O] COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2341 CH60_2342 CH60_2342 dsbE dsbE 2538121 2538687 - periplasmic thiol:disulfide oxidoreductase%2C DsbE subfamily protein dsbE: periplasmic thiol:disulfide oxidoreductases%2C DsbE subfamily protein~[OC] COG0526 Thiol-disulfide isomerase and thioredoxins gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2342 CH60_2343 CH60_2343 ccmF ccmF 2538684 2540654 - cytochrome c-type biogenesis protein CcmF nrfE: cytochrome c-type biogenesis protein CcmF~[O] COG1138 Cytochrome c biogenesis factor gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2343 CH60_2344 CH60_2344 ccmE ccmE 2540651 2541145 - cytochrome c-type biogenesis protein CcmE [O] COG2332 Cytochrome c-type biogenesis protein CcmE gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2344 CH60_2345 CH60_2345 ccmD ccmD 2541142 2541444 - heme exporter protein CcmD cytochro_ccmD: heme exporter protein CcmD~[U] COG3114 Heme exporter protein D gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2345 CH60_2346 CH60_2346 ccmC ccmC 2541441 2542178 - heme exporter CcmC family protein ccmC: heme exporter CcmC family protein~[O] COG0755 ABC-type transport system involved in cytochrome c biogenesis%2C permease component gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2346 CH60_2347 CH60_2347 ccmB ccmB 2542241 2542900 - heme exporter protein CcmB ccmB: heme exporter protein CcmB~[O] COG2386 ABC-type transport system involved in cytochrome c biogenesis%2C permease component gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2347 CH60_2348 CH60_2348 ccmA ccmA 2542870 2543526 - heme ABC exporter%2C ATP-binding protein CcmA ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[O] COG4133 ABC-type transport system involved in cytochrome c biogenesis%2C ATPase component gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2348 CH60_2349 CH60_2349 CH60_2349 2543971 2544438 - hypothetical protein conserved hypothetical protein gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2349 CH60_235 CH60_235 efp efp 237944 238510 - translation elongation factor P efp: translation elongation factor P~[J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_235 CH60_2350 CH60_2350 CH60_2350 2544693 2544767 - tRNA-Arg tRNA gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2350 CH60_2351 CH60_2351 CH60_2351 2545054 2545596 + lemA family protein [S] COG1704 Uncharacterized conserved protein gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2351 CH60_2352 CH60_2352 CH60_2352 2545601 2547640 + hypothetical protein conserved hypothetical protein gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2352 CH60_2353 CH60_2353 CH60_2353 2548016 2548357 + phnA Zinc-Ribbon family protein [P] COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2353 CH60_2354 CH60_2354 CH60_2354 2548731 2549939 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2354 CH60_2355 CH60_2355 CH60_2355 2549987 2550337 - cupin domain protein [S] COG1917 Uncharacterized conserved protein%2C contains double-stranded beta-helix domain gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2355 CH60_2356 CH60_2356 CH60_2356 2550673 2551509 + kduI/IolB family protein [G] COG3717 5-keto 4-deoxyuronate isomerase gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2356 CH60_2357 CH60_2357 kduD kduD 2551601 2552362 + 2-deoxy-D-gluconate 3-dehydrogenase kduD: 2-deoxy-D-gluconate 3-dehydrogenase~[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2357 CH60_2358 CH60_2358 CH60_2358 2552698 2554365 + periplasmic pectate lyase family protein gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2358 CH60_2359 CH60_2359 CH60_2359 2554406 2555296 + binding--dependent transport system inner membrane component family protein [G] COG1175 ABC-type sugar transport systems%2C permease components gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2359 CH60_236 CH60_236 epmB epmB 238591 239574 + EF-P beta-lysylation protein EpmB EFP_modif_epmB: EF-P beta-lysylation protein EpmB~[E] COG1509 Lysine 2%2C3-aminomutase gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_236 CH60_2360 CH60_2360 CH60_2360 2555289 2556209 + putative inner membrane permease of oligogalacturonide ABC transporter%3Bbinding--dependent transport system inner membrane component family protein pseudogene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2360 CH60_2362 CH60_2362 CH60_2362 2556223 2557350 + ABC transporter family protein [G] COG3839 ABC-type sugar transport systems%2C ATPase components gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2362 CH60_2363 CH60_2363 CH60_2363 2557366 2558658 + bacterial extracellular solute-binding family protein [G] COG1653 ABC-type sugar transport system%2C periplasmic component gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2363 CH60_2364 CH60_2364 kdgM kdgM 2558956 2559666 + oligogalacturonate-specific porin kdgM gene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2364 CH60_2365 CH60_2365 CH60_2365 2560146 2560694 + hypothetical protein conserved hypothetical protein~[R] COG1988 Predicted membrane-bound metal-dependent hydrolases gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2365 CH60_2366 CH60_2366 CH60_2366 2560898 2562289 + dicarboxylate symporter family protein sodium:dicarboxylate symporter family protein~[R] COG1823 Predicted Na+/dicarboxylate symporter gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2366 CH60_2367 CH60_2367 CH60_2367 2562504 2563355 - N-acetylmuramoyl-L-alanine amidase family protein [V] COG3023 Negative regulator of beta-lactamase expression gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2367 CH60_2368 CH60_2368 kdgR kdgR 2563740 2564531 - pectin degradation repressor protein kdgR [K] COG1414 Transcriptional regulator gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2368 CH60_2369 CH60_2369 ogl ogl 2564718 2565884 - oligogalacturonate lyase [U] COG0823 Periplasmic component of the Tol biopolymer transport system gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2369 CH60_237 CH60_237 CH60_237 239859 240134 - hypothetical protein conserved hypothetical protein gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_237 CH60_2370 CH60_2370 CH60_2370 2566211 2567578 + major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2370 CH60_2371 CH60_2371 CH60_2371 2567632 2568435 - hypothetical protein pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2371 CH60_2372 CH60_2372 CH60_2372 2568432 2569595 - fimbrial family protein [NU] COG3539 P pilus assembly protein%2C pilin FimA gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2372 CH60_2373 CH60_2373 CH60_2373 2569592 2572204 - hypothetical protein papC N-terminal domain protein~[NU] COG3188 P pilus assembly protein%2C porin PapC gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2373 CH60_2374 CH60_2374 CH60_2374 2572286 2573065 - hypothetical protein pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2374 CH60_2375 CH60_2375 CH60_2375 2573218 2573760 - fimbrial family protein [NU] COG3539 P pilus assembly protein%2C pilin FimA gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2375 CH60_2376 CH60_2376 CH60_2376 2574418 2575299 - peptidase M48 family protein [O] COG0501 Zn-dependent protease with chaperone function gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2376 CH60_2377 CH60_2377 CH60_2377 2574294 2574482 + hypothetical protein conserved hypothetical protein gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2377 CH60_2378 CH60_2378 prc prc 2575791 2577863 - tail-specific protease [M] COG0793 Periplasmic protease gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2378 CH60_2379 CH60_2379 proQ proQ 2577883 2578596 - proP effector [T] COG3109 Activator of osmoprotectant transporter ProP gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2379 CH60_238 CH60_238 groL groL 240881 242527 - chaperonin GroL groEL: chaperonin GroL~[O] COG0459 Chaperonin GroEL (HSP60 family) gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_238 CH60_2380 CH60_2380 CH60_2380 2578692 2579189 - GAF domain protein [T] COG1956 GAF domain-containing protein gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2380 CH60_2381 CH60_2381 CH60_2381 2579421 2580668 + integral membrane%2C PqiA family protein pqiA_fam: integral membrane%2C PqiA family protein~[S] COG2995 Uncharacterized paraquat-inducible protein A gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2381 CH60_2382 CH60_2382 CH60_2382 2580637 2583288 + mce related family protein [R] COG3008 Paraquat-inducible protein B gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2382 CH60_2383 CH60_2383 CH60_2383 2583767 2584321 + spore Coat Protein U domain protein [S] COG5430 Uncharacterized secreted protein gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2383 CH60_2384 CH60_2384 CH60_2384 2584327 2584857 + spore Coat Protein U domain protein [S] COG5430 Uncharacterized secreted protein gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2384 CH60_2385 CH60_2385 CH60_2385 2584878 2585435 + spore Coat Protein U domain protein [S] COG5430 Uncharacterized secreted protein gene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2385 CH60_2386 CH60_2386 CH60_2386 2585466 2586218 + hypothetical protein pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2386 CH60_2387 CH60_2387 CH60_2387 2586372 2588819 + outer membrane usher family protein [NU] COG3188 P pilus assembly protein%2C porin PapC gene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2387 CH60_2388 CH60_2388 CH60_2388 2589025 2590014 + spore Coat Protein U domain protein [S] COG5430 Uncharacterized secreted protein gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2388 CH60_2389 CH60_2389 CH60_2389 2590222 2590461 + hypothetical protein conserved hypothetical protein gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2389 CH60_239 CH60_239 groS groS 242574 242867 - 10 kDa chaperonin [O] COG0234 Co-chaperonin GroES (HSP10) gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_239 CH60_2390 CH60_2390 CH60_2390 2590571 2590960 - ASCH domain protein [S] COG4405 Uncharacterized protein conserved in bacteria gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2390 CH60_2391 CH60_2391 CH60_2391 2591367 2592056 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2391 CH60_2392 CH60_2392 CH60_2392 2592076 2592390 + putative transposase Orf A%2C insertion element IS100 [L] COG4584 Transposase and inactivated derivatives gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2392 CH60_2393 CH60_2393 CH60_2393 2592390 2592602 + putative transposition helper domain protein [L] COG1484 DNA replication protein gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2393 CH60_2394 CH60_2394 CH60_2394 2592581 2593168 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2394 CH60_2395 CH60_2395 CH60_2395 2593229 2593579 + UTRA domain protein [K] COG2188 Transcriptional regulators gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2395 CH60_2396 CH60_2396 hutI hutI 2593783 2595003 + imidazolonepropionase hutI: imidazolonepropionase~[Q] COG1228 Imidazolonepropionase and related amidohydrolases gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2396 CH60_2397 CH60_2397 hutG hutG 2595000 2595806 + N-formylglutamate deformylase hutG_amidohyd: N-formylglutamate deformylase~[E] COG3741 N-formylglutamate amidohydrolase gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2397 CH60_2398 CH60_2398 CH60_2398 2596135 2597217 - gram-negative porin family protein [M] COG3203 Outer membrane protein (porin) gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2398 CH60_2399 CH60_2399 astE astE 2597944 2598936 - succinylglutamate desuccinylase arg_catab_astE: succinylglutamate desuccinylase~[E] COG2988 Succinylglutamate desuccinylase gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2399 CH60_24 CH60_24 CH60_24 29656 30162 - hypothetical protein conserved hypothetical protein gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_24 CH60_240 CH60_240 CH60_240 243122 243700 - fxsA cytoplasmic membrane family protein [R] COG3030 Protein affecting phage T7 exclusion by the F plasmid gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_240 CH60_2400 CH60_2400 astB astB 2598997 2600340 - succinylarginine dihydrolase arg_catab_astB: succinylarginine dihydrolase~[E] COG3724 Succinylarginine dihydrolase gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2400 CH60_2401 CH60_2401 astD astD 2600364 2601851 - succinylglutamate-semialdehyde dehydrogenase arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase~[C] COG1012 NAD-dependent aldehyde dehydrogenases gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2401 CH60_2402 CH60_2402 astA astA 2601878 2602930 - arginine N-succinyltransferase arg_catab_AstA: arginine N-succinyltransferase~[E] COG3138 Arginine/ornithine N-succinyltransferase beta subunit gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2402 CH60_2403 CH60_2403 astC astC 2602960 2604204 - succinylornithine transaminase family protein arg_catab_astC: succinylornithine transaminase family protein~[E] COG4992 Ornithine/acetylornithine aminotransferase gene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2403 CH60_2404 CH60_2404 CH60_2404 2604458 2604547 + hypothetical protein gene gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2404 CH60_2405 CH60_2405 CH60_2405 2604682 2604825 - hypothetical protein gene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2405 CH60_2406 CH60_2406 CH60_2406 2604841 2606142 - aminotransferase class I and II family protein [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2406 CH60_2407 CH60_2407 CH60_2407 2606572 2608353 + histidine kinase family protein [T] COG3850 Signal transduction histidine kinase%2C nitrate/nitrite-specific gene gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2407 CH60_2408 CH60_2408 chaA chaA 2608902 2610002 + calcium/proton exchanger family protein caca2: calcium/proton exchanger family protein~[P] COG0387 Ca2+/H+ antiporter gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2408 CH60_2409 CH60_2409 CH60_2409 2610105 2610893 - phoH-like family protein [T] COG1702 Phosphate starvation-inducible protein PhoH%2C predicted ATPase gene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2409 CH60_241 CH60_241 aspA aspA 244148 245584 + aspartate ammonia-lyase aspA: aspartate ammonia-lyase~[E] COG1027 Aspartate ammonia-lyase gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_241 CH60_2410 CH60_2410 CH60_2410 2610953 2611231 - hypothetical protein conserved hypothetical protein gene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2410 CH60_2411 CH60_2411 CH60_2411 2611670 2612380 - acetyltransferase family protein [J] COG1670 Acetyltransferases%2C including N-acetylases of ribosomal proteins gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2411 CH60_2412 CH60_2412 pgaD pgaD 2612902 2613369 - poly-beta-1%2C6-N-acetyl-D-glucosamine biosynthesis protein PgaD PGA_PgaD: poly-beta-1%2C6-N-acetyl-D-glucosamine biosynthesis protein PgaD gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2412 CH60_2413 CH60_2413 pgaC pgaC 2613366 2614700 - poly-beta-1%2C6 N-acetyl-D-glucosamine synthase pgaC_IcaA: poly-beta-1%2C6 N-acetyl-D-glucosamine synthase~[M] COG1215 Glycosyltransferases%2C probably involved in cell wall biogenesis gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2413 CH60_2414 CH60_2414 pgaB pgaB 2614690 2616711 - poly-beta-1%2C6-N-acetyl-D-glucosamine N-deacetylase PgaB deacetyl_PgaB: poly-beta-1%2C6-N-acetyl-D-glucosamine N-deacetylase PgaB~[G] COG0726 Predicted xylanase/chitin deacetylase gene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2414 CH60_2415 CH60_2415 pgaA pgaA 2616724 2619192 - poly-beta-1%2C6 N-acetyl-D-glucosamine export porin PgaA PGA_TPR_OMP: poly-beta-1%2C6 N-acetyl-D-glucosamine export porin PgaA gene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2415 CH60_2416 CH60_2416 CH60_2416 2619861 2621078 - hypothetical protein creatinase/Prolidase N-terminal domain protein~[E] COG0006 Xaa-Pro aminopeptidase gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2416 CH60_2417 CH60_2417 tehB tehB 2621219 2622106 - tellurite resistance protein TehB tehB: tellurite resistance protein TehB~[QR] COG0500 SAM-dependent methyltransferases gene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2417 CH60_2418 CH60_2418 CH60_2418 2622279 2622590 - cytochrome c family protein [C] COG2863 Cytochrome c553 gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2418 CH60_2419 CH60_2419 CH60_2419 2622590 2623060 - ahpC/TSA family protein [OC] COG0526 Thiol-disulfide isomerase and thioredoxins gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2419 CH60_242 CH60_242 dcuA dcuA 245704 247005 + anaerobic C4-dicarboxylate transporter dcuA [R] COG2704 Anaerobic C4-dicarboxylate transporter gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_242 CH60_2420 CH60_2420 CH60_2420 2623077 2623790 - ABC transporter family protein [V] COG1136 ABC-type antimicrobial peptide transport system%2C ATPase component gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2420 CH60_2421 CH60_2421 CH60_2421 2623794 2624924 - ftsX-like permease family protein [V] COG0577 ABC-type antimicrobial peptide transport system%2C permease component gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2421 CH60_2422 CH60_2422 CH60_2422 2624947 2626239 - ftsX-like permease family protein [V] COG0577 ABC-type antimicrobial peptide transport system%2C permease component gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2422 CH60_2423 CH60_2423 CH60_2423 2626242 2627651 - YHS domain protein [S] COG4393 Predicted membrane protein gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2423 CH60_2424 CH60_2424 CH60_2424 2627952 2628479 - fe2+ transport family protein [P] COG3470 Uncharacterized protein probably involved in high-affinity Fe2+ transport gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2424 CH60_2425 CH60_2425 CH60_2425 2628683 2630602 - iron permease FTR1 family protein [P] COG0672 High-affinity Fe2+/Pb2+ permease gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2425 CH60_2426 CH60_2426 CH60_2426 2631182 2632822 - major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2426 CH60_2427 CH60_2427 glsA glsA 2632933 2633940 - glutaminase A gln_ase: glutaminase A~[E] COG2066 Glutaminase gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2427 CH60_2428 CH60_2428 CH60_2428 2635151 2635921 + deoR-like helix-turn-helix domain protein [KG] COG1349 Transcriptional regulators of sugar metabolism gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2428 CH60_2429 CH60_2429 CH60_2429 2636643 2638172 + amino acid permease family protein [E] COG1113 Gamma-aminobutyrate permease and related permeases gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2429 CH60_243 CH60_243 cutA cutA 247226 247549 + divalent-cation tolerance protein CutA [P] COG1324 Uncharacterized protein involved in tolerance to divalent cations gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_243 CH60_2430 CH60_2430 CH60_2430 2638368 2639528 - aminotransferase class I and II family protein [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2430 CH60_2431 CH60_2431 nqrE nqrE 2639880 2640479 + ubiquinone oxidoreductase%2C Na(+)-translocating%2C E subunit NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C E subunit~nqrE: NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C E subunit~[C] COG2209 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrE gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2431 CH60_2432 CH60_2432 CH60_2432 2640784 2641746 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2432 CH60_2433 CH60_2433 CH60_2433 2641858 2642727 + amidohydrolase family protein [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2433 CH60_2434 CH60_2434 CH60_2434 2642793 2644022 + sugar (and other) transporter family protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2434 CH60_2435 CH60_2435 CH60_2435 2644242 2644802 + hypothetical protein conserved hypothetical protein gene gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2435 CH60_2436 CH60_2436 CH60_2436 2644827 2645300 + carboxypeptidase regulatory-like domain protein gene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2436 CH60_2437 CH60_2437 CH60_2437 2645375 2646253 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2437 CH60_2438 CH60_2438 CH60_2438 2646348 2647190 + hpcH/HpaI aldolase/citrate lyase family protein [G] COG2301 Citrate lyase beta subunit gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2438 CH60_2439 CH60_2439 CH60_2439 2647255 2647782 + maoC like domain protein [I] COG2030 Acyl dehydratase gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2439 CH60_244 CH60_244 CH60_244 247525 249312 + cytochrome C biogenesis transmembrane region family protein [OC] COG4232 Thiol:disulfide interchange protein gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_244 CH60_2440 CH60_2440 CH60_2440 2647805 2649127 + hypothetical protein acetyl-CoA hydrolase/transferase N-terminal domain protein~[C] COG0427 Acetyl-CoA hydrolase gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2440 CH60_2441 CH60_2441 CH60_2441 2649317 2649448 - hypothetical protein conserved hypothetical protein gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2441 CH60_2442 CH60_2442 CH60_2442 2649953 2650585 + bacterial regulatory s%2C luxR family protein [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2442 CH60_2443 CH60_2443 CH60_2443 2650560 2654428 + his Kinase A domain protein%3Bresponse regulator pseudogene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2443 CH60_2445 CH60_2445 CH60_2445 2654941 2655471 + fimbrial family protein [NU] COG3539 P pilus assembly protein%2C pilin FimA gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2445 CH60_2446 CH60_2446 CH60_2446 2655564 2656208 + hypothetical protein pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2446 CH60_2447 CH60_2447 CH60_2447 2656257 2658848 + hypothetical protein papC N-terminal domain protein~[NU] COG3188 P pilus assembly protein%2C porin PapC gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2447 CH60_2448 CH60_2448 CH60_2448 2658936 2660213 + fimbrial family protein gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2448 CH60_2449 CH60_2449 CH60_2449 2660210 2660950 + hypothetical protein pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2449 CH60_245 CH60_245 CH60_245 249374 251521 - formate dehydrogenase%2C alpha subunit fdh-alpha: formate dehydrogenase%2C alpha subunit~[C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_245 CH60_2450 CH60_2450 CH60_2450 2661253 2661328 + tRNA-Asn tRNA gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2450 CH60_2451 CH60_2451 int int 2661490 2662752 + CP4-like integrase [L] COG0582 Integrase gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2451 CH60_2452 CH60_2452 CH60_2452 2662946 2664250 - salicylate synthase salicyl_syn: salicylate synthase~[EH] COG0147 Anthranilate/para-aminobenzoate synthases component I gene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2452 CH60_2453 CH60_2453 CH60_2453 2664278 2665558 - major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2453 CH60_2454 CH60_2454 CH60_2454 2665551 2667353 - ABC transporter family protein [V] COG1132 ABC-type multidrug transport system%2C ATPase and permease components gene gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2454 CH60_2455 CH60_2455 CH60_2455 2667340 2669142 - ABC transporter family protein [V] COG1132 ABC-type multidrug transport system%2C ATPase and permease components gene gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2455 CH60_2456 CH60_2456 CH60_2456 2669309 2670268 + helix-turn-helix domain protein [K] COG2207 AraC-type DNA-binding domain-containing proteins gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2456 CH60_2457 CH60_2457 CH60_2457 2670459 2676566 + amino acid adenylation domain protein AA-adenyl-dom: amino acid adenylation domain protein~[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2457 CH60_2458 CH60_2458 CH60_2458 2676654 2686145 + methyltransferase domain protein [Q] COG3321 Polyketide synthase modules and related proteins gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2458 CH60_2459 CH60_2459 CH60_2459 2686142 2687242 + thiazolinyl imide reductase family protein thiaz-red: thiazolinyl imide reductase family protein~[Q] COG4693 Oxidoreductase (NAD-binding)%2C involved in siderophore biosynthesis gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2459 CH60_246 CH60_246 CH60_246 251544 252101 - 4Fe-4S dicluster domain protein [C] COG1142 Fe-S-cluster-containing hydrogenase components 2 gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_246 CH60_2460 CH60_2460 CH60_2460 2687239 2688042 + thioesterase domain protein [Q] COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2460 CH60_2461 CH60_2461 CH60_2461 2688046 2689623 + AMP-binding enzyme family protein [Q] COG1021 Peptide arylation enzymes gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2461 CH60_2462 CH60_2462 CH60_2462 2689754 2691775 + TonB-dependent siderophore receptor family protein tonB-siderophor: TonB-dependent siderophore receptor family protein~[P] COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2462 CH60_2463 CH60_2463 CH60_2463 2692648 2693575 + hypothetical protein pseudogene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2463 CH60_2465 CH60_2465 CH60_2465 2693715 2693900 + prophage CP4-57 regulatory family protein [K] COG3311 Predicted transcriptional regulator gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2465 CH60_2466 CH60_2466 CH60_2466 2693922 2694083 + hypothetical protein conserved hypothetical protein gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2466 CH60_2467 CH60_2467 CH60_2467 2694089 2694670 + hypothetical protein conserved hypothetical protein gene gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2467 CH60_2468 CH60_2468 CH60_2468 2694660 2694869 + phage/conjugal plasmid C-4 type zinc finger%2C TraR family protein C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger%2C TraR family protein~[T] COG1734 DnaK suppressor protein gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2468 CH60_2469 CH60_2469 CH60_2469 2695112 2695225 + hemolysin expression modulating family protein gene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2469 CH60_247 CH60_247 CH60_247 252124 254139 - glutamate synthase%2C small subunit domain protein gltD_gamma_fam: glutamate synthase%2C small subunit domain protein~[ER] COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_247 CH60_2470 CH60_2470 CH60_2470 2695269 2695712 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2470 CH60_2471 CH60_2471 CH60_2471 2695675 2696049 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2471 CH60_2472 CH60_2472 CH60_2472 2696091 2696339 + hypothetical protein gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2472 CH60_2473 CH60_2473 CH60_2473 2696383 2696700 - integrase core domain protein [L] COG4584 Transposase and inactivated derivatives gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2473 CH60_2474 CH60_2474 CH60_2474 2696673 2697068 - helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2474 CH60_2475 CH60_2475 CH60_2475 2697082 2697456 - hypothetical protein beta-ketoacyl synthase%2C N-terminal domain protein~[IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2475 CH60_2476 CH60_2476 CH60_2476 2697702 2697890 + putative membrane protein gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2476 CH60_2477 CH60_2477 fabA fabA 2698156 2698674 - beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA~[I] COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2477 CH60_2478 CH60_2478 CH60_2478 2698743 2700326 - hypothetical protein lon protease (S16) C-terminal proteolytic domain protein~[O] COG1067 Predicted ATP-dependent protease gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2478 CH60_2479 CH60_2479 CH60_2479 2700705 2701160 + organizer of macrodomain of Terminus of chromosome family protein [S] COG3120 Uncharacterized protein conserved in bacteria gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2479 CH60_248 CH60_248 CH60_248 254559 255134 + bacterial regulatory s%2C tetR family protein [K] COG1309 Transcriptional regulator gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_248 CH60_2480 CH60_2480 CH60_2480 2701329 2701787 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2480 CH60_2481 CH60_2481 CH60_2481 2701988 2702992 - 37-kD nucleoid-associated bacterial family protein [R] COG3081 Nucleoid-associated protein gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2481 CH60_2482 CH60_2482 CH60_2482 2703170 2703397 + hypothetical protein conserved hypothetical protein~[S] COG3082 Uncharacterized protein conserved in bacteria gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2482 CH60_2483 CH60_2483 CH60_2483 2703425 2705221 + type I phosphodiesterase / nucleotide pyrophosphatase family protein [R] COG3083 Predicted hydrolase of alkaline phosphatase superfamily gene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2483 CH60_2484 CH60_2484 CH60_2484 2705326 2705402 + tRNA-Pro tRNA gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2484 CH60_2485 CH60_2485 CH60_2485 2705452 2705835 + hypothetical protein conserved hypothetical protein~[L] COG5519 Superfamily II helicase and inactivated derivatives gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2485 CH60_2486 CH60_2486 CH60_2486 2706192 2707340 + DNase/tRNase domain of colicin-like bacteriocin family protein gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2486 CH60_2487 CH60_2487 CH60_2487 2707353 2707841 + hypothetical protein conserved hypothetical protein gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2487 CH60_2488 CH60_2488 CH60_2488 2708112 2708204 + hypothetical protein conserved hypothetical protein~[L] COG3728 Phage terminase%2C small subunit gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2488 CH60_2489 CH60_2489 CH60_2489 2708541 2708897 + hypothetical protein conserved hypothetical protein gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2489 CH60_249 CH60_249 CH60_249 255279 255354 + tRNA-Phe tRNA gene246 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_249 CH60_2490 CH60_2490 CH60_2490 2708959 2709492 + transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2490 CH60_2491 CH60_2491 CH60_2491 2709596 2710165 + transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2491 CH60_2492 CH60_2492 CH60_2492 2710765 2711766 + hypothetical protein conserved hypothetical protein~[LKJ] COG0513 Superfamily II DNA and RNA helicases gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2492 CH60_2493 CH60_2493 CH60_2493 2711977 2712435 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2493 CH60_2494 CH60_2494 CH60_2494 2712850 2713779 + hypothetical protein conserved hypothetical protein~[S] COG3595 Uncharacterized conserved protein gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2494 CH60_2495 CH60_2495 CH60_2495 2714079 2715017 + dihydrouridine synthase family protein [J] COG0042 tRNA-dihydrouridine synthase gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2495 CH60_2496 CH60_2496 CH60_2496 2715091 2715270 - putative membrane protein gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2496 CH60_2497 CH60_2497 CH60_2497 2715609 2716544 + D-alanyl-D-alanine carboxypeptidase family protein [M] COG1686 D-alanyl-D-alanine carboxypeptidase gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2497 CH60_2498 CH60_2498 CH60_2498 2716665 2718377 - FAD binding domain protein [C] COG0277 FAD/FMN-containing dehydrogenases gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2498 CH60_2499 CH60_2499 cyaB cyaB 2718587 2719126 + adenylate cyclase 2 [F] COG1437 Adenylate cyclase%2C class 2 (thermophilic) gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2499 CH60_25 CH60_25 CH60_25 30230 30727 - hypothetical protein conserved hypothetical protein gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_25 CH60_2500 CH60_2500 CH60_2500 2719152 2719493 - HNH endonuclease family protein gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2500 CH60_2501 CH60_2501 CH60_2501 2719806 2720909 + suppressor of fused family protein gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2501 CH60_2502 CH60_2502 CH60_2502 2721094 2721342 + transglycosylase associated family protein [S] COG2261 Predicted membrane protein gene gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2502 CH60_2503 CH60_2503 phnC phnC 2721550 2722386 + phosphonate ABC transporter%2C ATP-binding protein ABC_phnC: phosphonate ABC transporter%2C ATP-binding protein~[P] COG3638 ABC-type phosphate/phosphonate transport system%2C ATPase component gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2503 CH60_2504 CH60_2504 phnD phnD 2722423 2723352 + phosphonate ABC transporter%2C periplasmic phosphonate binding protein phnD: phosphonate ABC transporter%2C periplasmic phosphonate binding protein~[P] COG3221 ABC-type phosphate/phosphonate transport system%2C periplasmic component gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2504 CH60_2505 CH60_2505 phnE phnE 2723455 2724315 + phosphonate ABC transporter%2C permease protein PhnE phnE: phosphonate ABC transporter%2C permease protein PhnE~[P] COG3639 ABC-type phosphate/phosphonate transport system%2C permease component gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2505 CH60_2506 CH60_2506 phnE phnE 2724318 2725199 + phosphonate ABC transporter%2C permease protein PhnE phnE: phosphonate ABC transporter%2C permease protein PhnE~[P] COG3639 ABC-type phosphate/phosphonate transport system%2C permease component gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2506 CH60_2507 CH60_2507 CH60_2507 2725445 2725918 + hypothetical protein conserved hypothetical protein~[S] COG4807 Uncharacterized protein conserved in bacteria gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2507 CH60_2508 CH60_2508 CH60_2508 2726353 2727621 + periplasmic binding domain protein [E] COG0683 ABC-type branched-chain amino acid transport systems%2C periplasmic component gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2508 CH60_2509 CH60_2509 urtB urtB 2727799 2729346 + urea ABC transporter%2C permease protein UrtB urea_trans_UrtB: urea ABC transporter%2C permease protein UrtB~[E] COG0559 Branched-chain amino acid ABC-type transport system%2C permease components gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2509 CH60_251 CH60_251 CH60_251 255788 258343 - viral enhancin family protein gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_251 CH60_2510 CH60_2510 urtC urtC 2729346 2730422 + urea ABC transporter%2C permease protein UrtC urea_trans_UrtC: urea ABC transporter%2C permease protein UrtC~[E] COG4177 ABC-type branched-chain amino acid transport system%2C permease component gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2510 CH60_2511 CH60_2511 urtD urtD 2730419 2731255 + urea ABC transporter%2C ATP-binding protein UrtD urea_trans_UrtD: urea ABC transporter%2C ATP-binding protein UrtD~[R] COG4674 Uncharacterized ABC-type transport system%2C ATPase component gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2511 CH60_2512 CH60_2512 urtE urtE 2731349 2732047 + urea ABC transporter%2C ATP-binding protein UrtE urea_trans_UrtE: urea ABC transporter%2C ATP-binding protein UrtE~[E] COG0410 ABC-type branched-chain amino acid transport systems%2C ATPase component gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2512 CH60_2513 CH60_2513 CH60_2513 2732162 2733019 + hypothetical protein conserved hypothetical protein gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2513 CH60_2514 CH60_2514 CH60_2514 2733043 2734458 + beta-eliminating lyase family protein [E] COG0076 Glutamate decarboxylase and related PLP-dependent proteins gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2514 CH60_2515 CH60_2515 CH60_2515 2734620 2735474 - rhodanese-like domain protein [P] COG2897 Rhodanese-related sulfurtransferase gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2515 CH60_2516 CH60_2516 CH60_2516 2736210 2737142 + substrate binding domain of ABC-type glycine betaine transport system family protein pseudogene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2516 CH60_2518 CH60_2518 CH60_2518 2737403 2738557 + binding--dependent transport system inner membrane component family protein [E] COG1174 ABC-type proline/glycine betaine transport systems%2C permease component gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2518 CH60_2519 CH60_2519 CH60_2519 2738554 2739492 + ABC transporter family protein [E] COG1125 ABC-type proline/glycine betaine transport systems%2C ATPase components gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2519 CH60_252 CH60_252 CH60_252 258599 258718 + hypothetical protein conserved hypothetical protein gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_252 CH60_2520 CH60_2520 CH60_2520 2739489 2740325 + binding--dependent transport system inner membrane component family protein [E] COG1174 ABC-type proline/glycine betaine transport systems%2C permease component gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2520 CH60_2521 CH60_2521 adiC adiC 2740785 2742119 + arginine/agmatine antiporter [E] COG0531 Amino acid transporters gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2521 CH60_2522 CH60_2522 adiA adiA 2742189 2744495 + biodegradative arginine decarboxylase [E] COG1982 Arginine/lysine/ornithine decarboxylases gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2522 CH60_2523 CH60_2523 CH60_2523 2744613 2744816 - hypothetical protein conserved hypothetical protein gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2523 CH60_2524 CH60_2524 CH60_2524 2744941 2745831 - eamA-like transporter family protein [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2524 CH60_2525 CH60_2525 CH60_2525 2746243 2747358 - gram-negative porin family protein [M] COG3203 Outer membrane protein (porin) gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2525 CH60_2526 CH60_2526 CH60_2526 2747628 2749808 + DEAD_2 family protein [KL] COG1199 Rad3-related DNA helicases gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2526 CH60_2527 CH60_2527 katA katA 2749876 2751315 - catalase [P] COG0753 Catalase gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2527 CH60_2528 CH60_2528 CH60_2528 2751676 2752218 + yfaZ family protein gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2528 CH60_2529 CH60_2529 CH60_2529 2752475 2753683 - aromatic amino acid transport family protein araaP: aromatic amino acid transport family protein~[E] COG0814 Amino acid permeases gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2529 CH60_253 CH60_253 subB subB 258770 259195 + subtilase cytotoxin%2C subunit B gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_253 CH60_2530 CH60_2530 CH60_2530 2754302 2755495 + molybdenum cofactor synthesis domain protein molyb_syn: molybdenum cofactor synthesis domain protein~[R] COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2530 CH60_2531 CH60_2531 CH60_2531 2755553 2756062 - ecotin family protein [R] COG4574 Serine protease inhibitor ecotin gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2531 CH60_2532 CH60_2532 CH60_2532 2756097 2756354 - 2Fe-2S iron-sulfur cluster binding domain protein [C] COG0633 Ferredoxin gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2532 CH60_2533 CH60_2533 CH60_2533 2756358 2757488 - ribonucleotide reductase%2C small chain family protein [F] COG0208 Ribonucleotide reductase%2C beta subunit gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2533 CH60_2534 CH60_2534 CH60_2534 2757651 2759939 - ribonucleoside-diphosphate reductase%2C alpha subunit nrdE_NrdA: ribonucleoside-diphosphate reductase%2C alpha subunit~[F] COG0209 Ribonucleotide reductase%2C alpha subunit gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2534 CH60_2535 CH60_2535 ubiG ubiG 2760433 2761161 - 3-demethylubiquinone-9 3-O-methyltransferase ubiG: 3-demethylubiquinone-9 3-O-methyltransferase~[H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1%2C4-benzoquinol methylase gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2535 CH60_2536 CH60_2536 gyrA gyrA 2761423 2764098 + DNA gyrase%2C A subunit gyrA: DNA gyrase%2C A subunit~[L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II%2C topoisomerase IV)%2C A subunit gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2536 CH60_2537 CH60_2537 CH60_2537 2764310 2767159 + rcsC Alpha-Beta-Loop family protein [T] COG0642 Signal transduction histidine kinase gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2537 CH60_2538 CH60_2538 rcsB rcsB 2767227 2767880 - rcsB protein [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2538 CH60_2539 CH60_2539 CH60_2539 2767883 2768455 - hpt domain protein [T] COG2198 FOG: HPt domain gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2539 CH60_254 CH60_254 CH60_254 259631 259894 - hypothetical protein conserved hypothetical protein gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_254 CH60_2540 CH60_2540 CH60_2540 2768623 2770575 - histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase family protein [T] COG0642 Signal transduction histidine kinase gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2540 CH60_2541 CH60_2541 CH60_2541 2770599 2771753 - major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2541 CH60_2542 CH60_2542 CH60_2542 2772526 2772660 + putative membrane protein gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2542 CH60_2543 CH60_2543 ompC ompC 2772856 2773971 + outer membrane protein C [M] COG3203 Outer membrane protein (porin) gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2543 CH60_2544 CH60_2544 CH60_2544 2774355 2774442 + tRNA-Ser tRNA gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2544 CH60_2545 CH60_2545 CH60_2545 2774448 2774523 + tRNA-Thr tRNA gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2545 CH60_2546 CH60_2546 CH60_2546 2774711 2775877 - putative enzyme [V] COG1680 Beta-lactamase class C and other penicillin binding proteins gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2546 CH60_2547 CH60_2547 CH60_2547 2776152 2777588 - MFS/sugar transport family protein [G] COG2211 Na+/melibiose symporter and related transporters gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2547 CH60_2548 CH60_2548 CH60_2548 2778004 2778993 + beta-lactamase superfamily domain protein [R] COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2548 CH60_2549 CH60_2549 CH60_2549 2779067 2780854 - methyl-accepting chemotaxis (MCP) signaling domain protein [NT] COG0840 Methyl-accepting chemotaxis protein gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2549 CH60_255 CH60_255 CH60_255 260051 261085 + RhaT L-rhamnose-proton symporter family protein rhaT: RhaT L-rhamnose-proton symporter family protein~[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_255 CH60_2550 CH60_2550 pla pla 2781261 2782196 - coagulase/fibrinolysin [M] COG4571 Outer membrane protease gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2550 CH60_2551 CH60_2551 CH60_2551 2782368 2782610 - dinI-like family protein gene gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2551 CH60_2552 CH60_2552 ci ci 2782816 2783538 - repressor protein CI [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2552 CH60_2553 CH60_2553 CH60_2553 2783866 2784291 + phage antitermination Q family protein gene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2553 CH60_2554 CH60_2554 CH60_2554 2784502 2785806 + hypothetical protein conserved hypothetical protein~[S] COG3395 Uncharacterized protein conserved in bacteria gene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2554 CH60_2555 CH60_2555 CH60_2555 2785803 2786432 + hypothetical protein class II Aldolase and Adducin N-terminal domain protein~[G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2555 CH60_2556 CH60_2556 CH60_2556 2786518 2787327 + deoR-like helix-turn-helix domain protein [KG] COG1349 Transcriptional regulators of sugar metabolism gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2556 CH60_2557 CH60_2557 CH60_2557 2787303 2788097 + xylose isomerase-like TIM barrel family protein [G] COG3622 Hydroxypyruvate isomerase gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2557 CH60_2558 CH60_2558 CH60_2558 2788711 2789001 + putative bacteriophage protein gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2558 CH60_2559 CH60_2559 CH60_2559 2789047 2789664 + putative bacteriophage ATP-binding protein gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2559 CH60_256 CH60_256 CH60_256 261254 262126 - helix-turn-helix domain protein [K] COG2207 AraC-type DNA-binding domain-containing proteins gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_256 CH60_2560 CH60_2560 CH60_2560 2789669 2789863 + hypothetical protein conserved hypothetical protein gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2560 CH60_2561 CH60_2561 CH60_2561 2789860 2791368 + phage tail sheath family protein [R] COG4386 Mu-like prophage tail sheath protein gpL gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2561 CH60_2562 CH60_2562 CH60_2562 2791390 2791758 + phage tail tube family protein gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2562 CH60_2563 CH60_2563 CH60_2563 2791760 2792059 + mu-like prophage FluMu gp41 family protein gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2563 CH60_2564 CH60_2564 CH60_2564 2792180 2793673 + putative bacteriophage coat protein gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2564 CH60_2565 CH60_2565 CH60_2565 2793940 2795346 + DNA circularization family protein [R] COG4228 Mu-like prophage DNA circulation protein gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2565 CH60_2566 CH60_2566 CH60_2566 2795343 2796398 + phage late control protein [R] COG4379 Mu-like prophage tail protein gpP gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2566 CH60_2567 CH60_2567 CH60_2567 2796414 2797010 + bacteriophage Mu Gp45 family protein [S] COG4384 Mu-like prophage protein gp45 gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2567 CH60_2568 CH60_2568 CH60_2568 2797007 2797462 + phage GP46 family protein [S] COG4381 Mu-like prophage protein gp46 gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2568 CH60_2569 CH60_2569 CH60_2569 2797466 2798602 + baseplate J-like family protein [S] COG3299 Uncharacterized homolog of phage Mu protein gp47 gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2569 CH60_257 CH60_257 CH60_257 262259 263080 - helix-turn-helix domain protein [K] COG2207 AraC-type DNA-binding domain-containing proteins gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_257 CH60_2570 CH60_2570 CH60_2570 2798599 2798859 + hypothetical protein conserved hypothetical protein gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2570 CH60_2571 CH60_2571 CH60_2571 2798856 2799203 + hypothetical protein conserved hypothetical protein~[S] COG3778 Uncharacterized protein conserved in bacteria gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2571 CH60_2572 CH60_2572 CH60_2572 2799591 2800079 + phage Tail Collar domain protein gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2572 CH60_2573 CH60_2573 CH60_2573 2800377 2801117 + SIS domain protein [K] COG1737 Transcriptional regulators gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2573 CH60_2574 CH60_2574 CH60_2574 2801286 2801411 + hypothetical protein conserved hypothetical protein gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2574 CH60_2575 CH60_2575 CH60_2575 2801408 2802844 + glycosyl hydrolase 1 family protein [G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2575 CH60_2576 CH60_2576 CH60_2576 2803029 2804237 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2576 CH60_2577 CH60_2577 CH60_2577 2804411 2804725 - hypothetical protein conserved hypothetical protein gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2577 CH60_2578 CH60_2578 CH60_2578 2804809 2805027 - hypothetical protein conserved hypothetical protein gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2578 CH60_2579 CH60_2579 CH60_2579 2805186 2805512 - putative molecular chaperone gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2579 CH60_258 CH60_258 CH60_258 263162 263305 - hypothetical protein conserved hypothetical protein gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_258 CH60_2580 CH60_2580 CH60_2580 2805546 2805746 - hypothetical protein conserved hypothetical protein gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2580 CH60_2581 CH60_2581 CH60_2581 2806564 2806830 - putative transposase [L] COG3335 Transposase and inactivated derivatives gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2581 CH60_2582 CH60_2582 CH60_2582 2806960 2808315 - hypothetical protein conserved hypothetical protein~[LKJ] COG0513 Superfamily II DNA and RNA helicases gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2582 CH60_2583 CH60_2583 CH60_2583 2808706 2809416 + bacterial regulatory s%2C tetR family protein [K] COG1309 Transcriptional regulator gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2583 CH60_2584 CH60_2584 CH60_2584 2809468 2810454 + efflux transporter%2C RND family%2C MFP subunit RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2584 CH60_2585 CH60_2585 ccmA ccmA 2810468 2812210 + heme ABC exporter%2C ATP-binding protein CcmA ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[V] COG1131 ABC-type multidrug transport system%2C ATPase component gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2585 CH60_2586 CH60_2586 CH60_2586 2812215 2813390 + ABC-2 type transporter family protein [V] COG0842 ABC-type multidrug transport system%2C permease component gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2586 CH60_2587 CH60_2587 ybhR ybhR 2813403 2814509 + inner membrane transport permease ybhR [V] COG0842 ABC-type multidrug transport system%2C permease component gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2587 CH60_2588 CH60_2588 CH60_2588 2814548 2814874 - hypothetical protein conserved hypothetical family protein gene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2588 CH60_2589 CH60_2589 CH60_2589 2815667 2816578 + bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2589 CH60_259 CH60_259 CH60_259 263302 263508 - putative phosphoribosylaminoimidazol (AIR) synthetase gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_259 CH60_2590 CH60_2590 CH60_2590 2816579 2817688 - flavin oxidoreductase / NADH oxidase family protein NADH:flavin oxidoreductase / NADH oxidase family protein~[C] COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme family gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2590 CH60_2591 CH60_2591 CH60_2591 2818036 2819400 - bacterial regulatory%2C Fis family protein [T] COG2204 Response regulator containing CheY-like receiver%2C AAA-type ATPase%2C and DNA-binding domains gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2591 CH60_2592 CH60_2592 CH60_2592 2819387 2821201 - sensory box protein [T] COG0642 Signal transduction histidine kinase gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2592 CH60_2593 CH60_2593 zraP zraP 2821559 2822032 + zinc resistance-associated protein [UNTP] COG3678 P pilus assembly/Cpx signaling pathway%2C periplasmic inhibitor/zinc-resistance associated protein gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2593 CH60_2594 CH60_2594 CH60_2594 2822120 2822725 - major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2594 CH60_2595 CH60_2595 CH60_2595 2822838 2823296 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2595 CH60_2596 CH60_2596 CH60_2596 2823286 2824086 - lacY proton/sugar symporter family protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2596 CH60_2597 CH60_2597 xapA xapA 2824225 2825088 - xanthosine phosphorylase XAPA: xanthosine phosphorylase~[F] COG0005 Purine nucleoside phosphorylase gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2597 CH60_2598 CH60_2598 CH60_2598 2825401 2826282 + eamA-like transporter family protein [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2598 CH60_2599 CH60_2599 CH60_2599 2826320 2827213 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2599 CH60_26 CH60_26 CH60_26 30729 31583 - hypothetical protein conserved hypothetical family protein gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_26 CH60_260 CH60_260 rhaB rhaB 263546 264964 + rhamnulokinase rhamnulo_kin: rhamnulokinase~[G] COG1070 Sugar (pentulose and hexulose) kinases gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_260 CH60_2600 CH60_2600 CH60_2600 2827445 2829493 - transporter%2C betaine/carnitine/choline transporter family protein bcct: transporter%2C betaine/carnitine/choline transporter family protein~[M] COG1292 Choline-glycine betaine transporter gene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2600 CH60_2601 CH60_2601 betI betI 2829858 2830454 + transcriptional repressor BetI betaine_BetI: transcriptional repressor BetI~[K] COG1309 Transcriptional regulator gene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2601 CH60_2602 CH60_2602 betB betB 2830512 2831984 + betaine-aldehyde dehydrogenase BADH: betaine-aldehyde dehydrogenase~[C] COG1012 NAD-dependent aldehyde dehydrogenases gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2602 CH60_2603 CH60_2603 betA betA 2832007 2833710 + choline dehydrogenase betA: choline dehydrogenase~[E] COG2303 Choline dehydrogenase and related flavoproteins gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2603 CH60_2604 CH60_2604 CH60_2604 2833939 2834397 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2604 CH60_2605 CH60_2605 CH60_2605 2834632 2835342 - inhibitor of apoptosis-promoting Bax1 family protein [R] COG0670 Integral membrane protein%2C interacts with FtsH gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2605 CH60_2606 CH60_2606 CH60_2606 2835485 2835937 - moaE family protein [H] COG0314 Molybdopterin converting factor%2C large subunit gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2606 CH60_2607 CH60_2607 moaD moaD 2835940 2836185 - molybdopterin converting factor%2C subunit 1 moaD: molybdopterin converting factor%2C subunit 1~[H] COG1977 Molybdopterin converting factor%2C small subunit gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2607 CH60_2608 CH60_2608 moaC moaC 2836182 2836661 - molybdenum cofactor biosynthesis protein C moaC: molybdenum cofactor biosynthesis protein C~[H] COG0315 Molybdenum cofactor biosynthesis enzyme gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2608 CH60_2609 CH60_2609 moaA moaA 2836762 2837742 - molybdenum cofactor biosynthesis protein A moaA: molybdenum cofactor biosynthesis protein A~[H] COG2896 Molybdenum cofactor biosynthesis enzyme gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2609 CH60_261 CH60_261 rhaA rhaA 264961 266217 + L-rhamnose isomerase rhaA: L-rhamnose isomerase~[G] COG4806 L-rhamnose isomerase gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_261 CH60_2610 CH60_2610 CH60_2610 2837994 2838140 + hypothetical protein conserved hypothetical protein gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2610 CH60_2611 CH60_2611 CH60_2611 2838274 2838471 + hypothetical protein conserved hypothetical protein~[S] COG0391 Uncharacterized conserved protein gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2611 CH60_2612 CH60_2612 CH60_2612 2838522 2839073 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2612 CH60_2613 CH60_2613 CH60_2613 2839089 2839301 - putative transposition helper domain protein [L] COG1484 DNA replication protein gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2613 CH60_2614 CH60_2614 CH60_2614 2839578 2840321 - helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2614 CH60_2615 CH60_2615 CH60_2615 2840378 2841154 + hypothetical protein cofD_related: conserved hypothetical family protein~[S] COG0391 Uncharacterized conserved protein gene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2615 CH60_2616 CH60_2616 CH60_2616 2841285 2841530 - hypothetical protein conserved hypothetical protein~[S] COG4628 Uncharacterized conserved protein gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2616 CH60_2617 CH60_2617 uvrB uvrB 2841822 2843837 - excinuclease ABC subunit B uvrb: excinuclease ABC subunit B~[L] COG0556 Helicase subunit of the DNA excision repair complex gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2617 CH60_2618 CH60_2618 CH60_2618 2844928 2845638 + ABC transporter family protein [E] COG0410 ABC-type branched-chain amino acid transport systems%2C ATPase component gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2618 CH60_2619 CH60_2619 bioD bioD 2845790 2846512 - dethiobiotin synthase bioD: dethiobiotin synthase~[H] COG0132 Dethiobiotin synthetase gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2619 CH60_262 CH60_262 rhaD rhaD 266230 267054 + rhamnulose-1-phosphate aldolase rhamnu_1P_ald: rhamnulose-1-phosphate aldolase~[G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_262 CH60_2620 CH60_2620 bioC bioC 2846505 2847308 - malonyl-acyl carrier protein O-methyltransferase BioC bioC: malonyl-acyl carrier protein O-methyltransferase BioC~[QR] COG0500 SAM-dependent methyltransferases gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2620 CH60_2621 CH60_2621 bioF bioF 2847292 2848443 - 8-amino-7-oxononanoate synthase bioF: 8-amino-7-oxononanoate synthase~[H] COG0156 7-keto-8-aminopelargonate synthetase and related enzymes gene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2621 CH60_2622 CH60_2622 bioB bioB 2848443 2849480 - biotin synthase bioB: biotin synthase~[H] COG0502 Biotin synthase and related enzymes gene gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2622 CH60_2623 CH60_2623 bioA bioA 2849579 2850859 + adenosylmethionine-8-amino-7-oxononanoate transaminase bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase~[H] COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2623 CH60_2624 CH60_2624 CH60_2624 2851044 2852048 - lactonase%2C 7-bladed beta-propeller family protein [G] COG2706 3-carboxymuconate cyclase gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2624 CH60_2625 CH60_2625 CH60_2625 2852339 2853160 + Cof-like hydrolase family protein cof-sub: Cof-like hydrolase family protein~[R] COG0561 Predicted hydrolases of the HAD superfamily gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2625 CH60_2626 CH60_2626 modC modC 2853216 2854295 - molybdate ABC transporter%2C ATP-binding protein modC_ABC: molybdate ABC transporter%2C ATP-binding protein~[P] COG4148 ABC-type molybdate transport system%2C ATPase component gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2626 CH60_2627 CH60_2627 modB modB 2854289 2854984 - molybdate ABC transporter%2C permease protein modB_ABC: molybdate ABC transporter%2C permease protein~[P] COG4149 ABC-type molybdate transport system%2C permease component gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2627 CH60_2628 CH60_2628 modA modA 2854984 2855763 - molybdate ABC transporter%2C periplasmic molybdate-binding protein modA: molybdate ABC transporter%2C periplasmic molybdate-binding protein~[P] COG0725 ABC-type molybdate transport system%2C periplasmic component gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2628 CH60_2629 CH60_2629 CH60_2629 2855998 2856150 - hypothetical protein conserved hypothetical protein gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2629 CH60_263 CH60_263 fucO fucO 267121 268269 + lactaldehyde reductase lactal_redase: lactaldehyde reductase~[C] COG1454 Alcohol dehydrogenase%2C class IV gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_263 CH60_2630 CH60_2630 CH60_2630 2856416 2857207 + ModE molybdate transport repressor domain protein modE_repress: ModE molybdate transport repressor domain protein~[R] COG2005 N-terminal domain of molybdenum-binding protein gene gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2630 CH60_2631 CH60_2631 CH60_2631 2857317 2858807 + ABC transporter family protein [P] COG1119 ABC-type molybdenum transport system%2C ATPase component/photorepair protein PhrA gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2631 CH60_2632 CH60_2632 CH60_2632 2858841 2858969 + hypothetical protein conserved hypothetical protein gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2632 CH60_2633 CH60_2633 CH60_2633 2859024 2859842 + CAAX protease self-immunity family protein [R] COG1266 Predicted metal-dependent membrane protease gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2633 CH60_2634 CH60_2634 galE galE 2860202 2861218 + UDP-glucose 4-epimerase GalE galE: UDP-glucose 4-epimerase GalE~[M] COG1087 UDP-glucose 4-epimerase gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2634 CH60_2635 CH60_2635 galT galT 2861228 2862280 + galactose-1-phosphate uridylyltransferase galT_1: galactose-1-phosphate uridylyltransferase~[C] COG1085 Galactose-1-phosphate uridylyltransferase gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2635 CH60_2636 CH60_2636 galK galK 2862277 2863428 + galactokinase gal_kin: galactokinase~[G] COG0153 Galactokinase gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2636 CH60_2637 CH60_2637 galM galM 2863422 2863574 + galactose mutarotase gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2637 CH60_2638 CH60_2638 galM galM 2863595 2864491 + galactose mutarotase galM_Leloir: galactose mutarotase~[G] COG2017 Galactose mutarotase and related enzymes gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2638 CH60_2639 CH60_2639 CH60_2639 2864784 2865119 + psiF repeat family protein gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2639 CH60_264 CH60_264 rhaM rhaM 268283 268597 + L-rhamnose mutarotase yiiL_rotase: L-rhamnose mutarotase~[S] COG3254 Uncharacterized conserved protein gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_264 CH60_2640 CH60_2640 CH60_2640 2865466 2866218 + phosphoglycerate mutase 1 family protein pgm_1: phosphoglycerate mutase 1 family protein~[G] COG0588 Phosphoglycerate mutase 1 gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2640 CH60_2641 CH60_2641 CH60_2641 2866400 2867452 - 3-deoxy-7-phosphoheptulonate synthase aroFGH: 3-deoxy-7-phosphoheptulonate synthase~[E] COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2641 CH60_2642 CH60_2642 CH60_2642 2867742 2867849 - hypothetical protein conserved hypothetical protein gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2642 CH60_2643 CH60_2643 CH60_2643 2867901 2868839 + cation diffusion facilitator transporter family protein CDF: cation diffusion facilitator transporter family protein~[P] COG1230 Co/Zn/Cd efflux system component gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2643 CH60_2644 CH60_2644 pnuC pnuC 2868954 2869679 - nicotinamide mononucleotide transporter PnuC family protein NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC family protein~[H] COG3201 Nicotinamide mononucleotide transporter gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2644 CH60_2645 CH60_2645 nadA nadA 2869801 2870862 - quinolinate synthetase complex%2C A subunit nadA: quinolinate synthetase complex%2C A subunit~[H] COG0379 Quinolinate synthase gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2645 CH60_2646 CH60_2646 CH60_2646 2871231 2871300 - tRNA-OTHER tRNA-Pseudo tRNA gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2646 CH60_2647 CH60_2647 CH60_2647 2871329 2871404 - tRNA-Lys tRNA gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2647 CH60_2648 CH60_2648 CH60_2648 2871432 2871507 - tRNA-Lys tRNA gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2648 CH60_2649 CH60_2649 ygbF ygbF 2871698 2872507 - tol-pal system protein YbgF tol_pal_ybgF: tol-pal system protein YbgF~[S] COG1729 Uncharacterized protein conserved in bacteria gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2649 CH60_265 CH60_265 ssb ssb 268862 269410 - single-stranded DNA-binding protein [L] COG0629 Single-stranded DNA-binding protein gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_265 CH60_2650 CH60_2650 pal pal 2872517 2873023 - peptidoglycan-associated lipoprotein pal_lipo: peptidoglycan-associated lipoprotein~[M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2650 CH60_2651 CH60_2651 tolB tolB 2873074 2874366 - Tol-Pal system beta propeller repeat protein TolB propeller_TolB: Tol-Pal system beta propeller repeat protein TolB~[U] COG0823 Periplasmic component of the Tol biopolymer transport system gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2651 CH60_2652 CH60_2652 tolA tolA 2874486 2875652 - protein TolA tolA_full: protein TolA~[M] COG3064 Membrane protein involved in colicin uptake gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2652 CH60_2653 CH60_2653 tolR tolR 2875764 2876192 - protein TolR tolR: protein TolR~[U] COG0848 Biopolymer transport protein gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2653 CH60_2654 CH60_2654 tolQ tolQ 2876205 2876891 - protein TolQ tolQ: protein TolQ~[U] COG0811 Biopolymer transport proteins gene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2654 CH60_2655 CH60_2655 ybgC ybgC 2876891 2877292 - tol-pal system-associated acyl-CoA thioesterase thio_ybgC: tol-pal system-associated acyl-CoA thioesterase~[R] COG0824 Predicted thioesterase gene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2655 CH60_2656 CH60_2656 CH60_2656 2877424 2877711 - cyd operon protein YbgE cyd_oper_ybgE: cyd operon protein YbgE~[S] COG3790 Predicted membrane protein gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2656 CH60_2657 CH60_2657 CH60_2657 2877701 2877835 - cyd operon protein YbgT cyd_oper_ybgT: cyd operon protein YbgT~[S] COG4890 Predicted outer membrane lipoprotein gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2657 CH60_2658 CH60_2658 cydB cydB 2877848 2878987 - cytochrome d ubiquinol oxidase%2C subunit II cydB: cytochrome d ubiquinol oxidase%2C subunit II~[C] COG1294 Cytochrome bd-type quinol oxidase%2C subunit 2 gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2658 CH60_2659 CH60_2659 cydA cydA 2879002 2880570 - cytochrome d ubiquinol oxidase subunit 1 [C] COG1271 Cytochrome bd-type quinol oxidase%2C subunit 1 gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2659 CH60_266 CH60_266 uvrA uvrA 269868 272711 + excinuclease ABC subunit A uvra: excinuclease ABC subunit A~[L] COG0178 Excinuclease ATPase subunit gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_266 CH60_2660 CH60_2660 CH60_2660 2881375 2881833 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2660 CH60_2661 CH60_2661 sucD sucD 2882047 2882919 - succinate-CoA ligase%2C alpha subunit sucCoAalpha: succinate-CoA ligase%2C alpha subunit~[C] COG0074 Succinyl-CoA synthetase%2C alpha subunit gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2661 CH60_2662 CH60_2662 sucC sucC 2882919 2884085 - succinyl-CoA ligase [ADP-forming] subunit beta [C] COG0045 Succinyl-CoA synthetase%2C beta subunit gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2662 CH60_2663 CH60_2663 sucB sucB 2884198 2885421 - dihydrolipoyllysine-residue succinyltransferase%2C E2 component of oxoglutarate dehydrogenase complex sucB: dihydrolipoyllysine-residue succinyltransferase%2C E2 component of oxoglutarate dehydrogenase complex~[C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide acyltransferase (E2) component%2C and related enzymes gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2663 CH60_2664 CH60_2664 sucA sucA 2885451 2888258 - oxoglutarate dehydrogenase (succinyl-transferring)%2C E1 component 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring)%2C E1 component~[C] COG0567 2-oxoglutarate dehydrogenase complex%2C dehydrogenase (E1) component%2C and related enzymes gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2664 CH60_2665 CH60_2665 CH60_2665 2888614 2889330 - succinate dehydrogenase and fumarate reductase iron-sulfur family protein dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur family protein~[C] COG0479 Succinate dehydrogenase/fumarate reductase%2C Fe-S protein subunit gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2665 CH60_2666 CH60_2666 sdhA sdhA 2889380 2891146 - succinate dehydrogenase%2C flavoprotein subunit sdhA_forward: succinate dehydrogenase%2C flavoprotein subunit~[C] COG1053 Succinate dehydrogenase/fumarate reductase%2C flavoprotein subunit gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2666 CH60_2667 CH60_2667 sdhD sdhD 2891147 2891494 - succinate dehydrogenase%2C hydrophobic membrane anchor protein succ_dehyd_anc: succinate dehydrogenase%2C hydrophobic membrane anchor protein~[C] COG2142 Succinate dehydrogenase%2C hydrophobic anchor subunit gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2667 CH60_2668 CH60_2668 sdhC sdhC 2891488 2891703 - succinate dehydrogenase%2C cytochrome b556 subunit succ_dehyd_cytB: succinate dehydrogenase%2C cytochrome b556 subunit~[C] COG2009 Succinate dehydrogenase/fumarate reductase%2C cytochrome b subunit gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2668 CH60_2669 CH60_2669 gltA gltA 2892587 2893867 + citrate (Si)-synthase cit_synth_I: citrate (Si)-synthase~[C] COG0372 Citrate synthase gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2669 CH60_267 CH60_267 CH60_267 272804 273163 - hypothetical protein conserved hypothetical protein~[S] COG2315 Uncharacterized protein conserved in bacteria gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_267 CH60_2670 CH60_2670 CH60_2670 2893975 2894553 - grpE family protein [O] COG0576 Molecular chaperone GrpE (heat shock protein) gene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2670 CH60_2671 CH60_2671 CH60_2671 2894791 2895558 + ATP-NAD kinase family protein [G] COG0061 Predicted sugar kinase gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2671 CH60_2672 CH60_2672 recN recN 2895645 2897306 + DNA repair protein RecN recN: DNA repair protein RecN~[L] COG0497 ATPase involved in DNA repair gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2672 CH60_2673 CH60_2673 smpA smpA 2897420 2897761 + small protein A [J] COG2913 Small protein A (tmRNA-binding) gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2673 CH60_2674 CH60_2674 CH60_2674 2897911 2898195 - rnfH Ubiquitin family protein [S] COG2914 Uncharacterized protein conserved in bacteria gene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2674 CH60_2675 CH60_2675 CH60_2675 2898188 2898622 - putative toxin YfjG [I] COG2867 Oligoketide cyclase/lipid transport protein gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2675 CH60_2676 CH60_2676 smpB smpB 2898783 2899265 + SsrA-binding protein smpB: SsrA-binding protein~[O] COG0691 tmRNA-binding protein gene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2676 CH60_2677 CH60_2677 CH60_2677 2899900 2900358 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2677 CH60_2678 CH60_2678 CH60_2678 2900582 2901781 + phage integrase family protein [L] COG0582 Integrase gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2678 CH60_2679 CH60_2679 CH60_2679 2901860 2902948 + hypothetical protein conserved hypothetical protein gene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2679 CH60_268 CH60_268 CH60_268 273690 274883 - aminotransferase class I and II family protein [E] COG1448 Aspartate/tyrosine/aromatic aminotransferase gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_268 CH60_2680 CH60_2680 CH60_2680 2902999 2904669 + hypothetical protein conserved hypothetical protein gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2680 CH60_2681 CH60_2681 CH60_2681 2905866 2906753 + hypothetical protein phage integrase%2C N-terminal SAM-like domain protein~[L] COG0582 Integrase gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2681 CH60_2682 CH60_2682 CH60_2682 2906746 2906946 + prophage CP4-57 regulatory family protein [K] COG3311 Predicted transcriptional regulator gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2682 CH60_2683 CH60_2683 CH60_2683 2906946 2907488 + ash family protein gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2683 CH60_2684 CH60_2684 CH60_2684 2907481 2908440 + zinc-binding domain of primase-helicase family protein [S] COG4643 Uncharacterized protein conserved in bacteria gene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2684 CH60_2685 CH60_2685 CH60_2685 2908437 2909525 + AAA domain protein [L] COG3598 RecA-family ATPase gene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2685 CH60_2686 CH60_2686 CH60_2686 2909776 2909877 - hypothetical protein gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2686 CH60_2687 CH60_2687 CH60_2687 2909874 2910188 - hypothetical protein conserved hypothetical protein~[K] COG3636 Predicted transcriptional regulator gene gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2687 CH60_2688 CH60_2688 CH60_2688 2910194 2910511 - hypothetical protein conserved hypothetical protein~[S] COG3657 Uncharacterized protein conserved in bacteria gene gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2688 CH60_2689 CH60_2689 intA intA 2910926 2911102 + prophage CP4-57 integrase domain protein [L] COG0582 Integrase gene gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2689 CH60_269 CH60_269 alr alr 275069 276148 - alanine racemase alr: alanine racemase~[M] COG0787 Alanine racemase gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_269 CH60_2690 CH60_2690 CH60_2690 2911116 2912138 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2690 CH60_2691 CH60_2691 CH60_2691 2912138 2912917 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2691 CH60_2692 CH60_2692 CH60_2692 2913389 2915470 + diguanylate cyclase domain protein GGDEF: diguanylate cyclase domain protein~[T] COG2202 FOG: PAS/PAC domain gene gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2692 CH60_2693 CH60_2693 CH60_2693 2915692 2915970 + hypothetical protein conserved hypothetical protein gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2693 CH60_2694 CH60_2694 CH60_2694 2916192 2917031 - ubiE/COQ5 methyltransferase family protein [QR] COG0500 SAM-dependent methyltransferases gene gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2694 CH60_2695 CH60_2695 CH60_2695 2917426 2918181 + multi-copper polyphenol oxidoreductase laccase family protein [S] COG1496 Uncharacterized conserved protein gene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2695 CH60_2696 CH60_2696 cspC cspC 2918272 2918481 - cold shock-like protein CspC [K] COG1278 Cold shock proteins gene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2696 CH60_2697 CH60_2697 CH60_2697 2919077 2919241 + hypothetical protein conserved hypothetical protein gene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2697 CH60_2698 CH60_2698 CH60_2698 2919642 2920241 + antimicrobial peptide resistance and lipid A acylation PagP family protein gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2698 CH60_2699 CH60_2699 CH60_2699 2920546 2921919 - amino acid permease family protein [E] COG1113 Gamma-aminobutyrate permease and related permeases gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2699 CH60_27 CH60_27 CH60_27 31686 34898 - outer membrane autotransporter barrel domain protein autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_27 CH60_270 CH60_270 dnaB dnaB 276245 277651 - replicative DNA helicase dnaB: replicative DNA helicase~[L] COG0305 Replicative DNA helicase gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_270 CH60_2700 CH60_2700 CH60_2700 2922156 2922401 - hypothetical protein conserved hypothetical protein gene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2700 CH60_2701 CH60_2701 CH60_2701 2922510 2922809 - hypothetical protein conserved hypothetical protein gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2701 CH60_2702 CH60_2702 CH60_2702 2923072 2923347 - yebO-like family protein gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2702 CH60_2703 CH60_2703 CH60_2703 2923930 2924163 + yobH-like family protein gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2703 CH60_2704 CH60_2704 CH60_2704 2924254 2924493 - hypothetical protein conserved hypothetical protein gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2704 CH60_2705 CH60_2705 CH60_2705 2924705 2924818 - putative membrane protein gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2705 CH60_2706 CH60_2706 CH60_2706 2925049 2925435 + helix-turn-helix domain protein [K] COG2207 AraC-type DNA-binding domain-containing proteins gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2706 CH60_2707 CH60_2707 CH60_2707 2925517 2925681 - putative membrane protein gene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2707 CH60_2708 CH60_2708 CH60_2708 2926337 2928055 + ABC transporter family protein [V] COG1132 ABC-type multidrug transport system%2C ATPase and permease components gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2708 CH60_2709 CH60_2709 CH60_2709 2928158 2929009 + RIO1 family protein [TD] COG1718 Serine/threonine protein kinase involved in cell cycle control gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2709 CH60_271 CH60_271 CH60_271 277983 278966 + zinc-binding dehydrogenase family protein [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_271 CH60_2710 CH60_2710 CH60_2710 2929246 2929434 + YCII-related domain protein [S] COG2350 Uncharacterized protein conserved in bacteria gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2710 CH60_2711 CH60_2711 mtfA mtfA 2929920 2930732 + protein mtfA [S] COG3228 Uncharacterized protein conserved in bacteria gene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2711 CH60_2712 CH60_2712 CH60_2712 2930910 2930985 + tRNA-Asn tRNA gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2712 CH60_2713 CH60_2713 CH60_2713 2931133 2932149 - bacterial regulatory s%2C lacI family protein [K] COG1609 Transcriptional regulators gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2713 CH60_2714 CH60_2714 lacY lacY 2932504 2933811 + lactose permease [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2714 CH60_2715 CH60_2715 CH60_2715 2933889 2936015 + melibiase family protein [G] COG3345 Alpha-galactosidase gene gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2715 CH60_2716 CH60_2716 CH60_2716 2936032 2936196 + hypothetical protein conserved hypothetical protein gene gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2716 CH60_2717 CH60_2717 CH60_2717 2936263 2936364 - hypothetical protein conserved hypothetical protein gene gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2717 CH60_2718 CH60_2718 CH60_2718 2936402 2937142 - 4'-phosphopantetheinyl transferase superfamily protein [Q] COG2977 Phosphopantetheinyl transferase component of siderophore synthetase gene gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2718 CH60_2719 CH60_2719 CH60_2719 2937665 2938657 + TRAP transporter solute receptor%2C DctP family protein dctP: TRAP transporter solute receptor%2C DctP family protein~[G] COG1638 TRAP-type C4-dicarboxylate transport system%2C periplasmic component gene gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2719 CH60_272 CH60_272 pspG pspG 279311 279529 - phage shock protein G phageshock_pspG: phage shock protein G gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_272 CH60_2720 CH60_2720 CH60_2720 2938781 2939287 + tripartite ATP-independent periplasmic transporter%2C DctQ component family protein [G] COG3090 TRAP-type C4-dicarboxylate transport system%2C small permease component gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2720 CH60_2721 CH60_2721 CH60_2721 2939307 2940599 + TRAP transporter%2C DctM subunit dctM: TRAP transporter%2C DctM subunit~[G] COG1593 TRAP-type C4-dicarboxylate transport system%2C large permease component gene gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2721 CH60_2722 CH60_2722 CH60_2722 2940857 2941486 + bacterial regulatory s%2C luxR family protein [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2722 CH60_2723 CH60_2723 CH60_2723 2941932 2942007 + tRNA-Asn tRNA gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2723 CH60_2724 CH60_2724 CH60_2724 2942353 2942892 - hypothetical protein conserved hypothetical protein~[S] COG3122 Uncharacterized protein conserved in bacteria gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2724 CH60_2725 CH60_2725 CH60_2725 2942982 2943677 - putative exported protein gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2725 CH60_2726 CH60_2726 CH60_2726 2944254 2945135 + polysaccharide deacetylase family protein [G] COG0726 Predicted xylanase/chitin deacetylase gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2726 CH60_2727 CH60_2727 CH60_2727 2945171 2946511 + sugar (and other) transporter family protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2727 CH60_2728 CH60_2728 CH60_2728 2946539 2947936 - MATE efflux family protein matE: MATE efflux family protein~[V] COG0534 Na+-driven multidrug efflux pump gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2728 CH60_2729 CH60_2729 argG argG 2948263 2949630 + argininosuccinate synthase argG: argininosuccinate synthase~[E] COG0137 Argininosuccinate synthase gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2729 CH60_273 CH60_273 dusA dusA 280045 281082 - tRNA dihydrouridine synthase A family protein yjbN: tRNA dihydrouridine synthase A family protein~[J] COG0042 tRNA-dihydrouridine synthase gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_273 CH60_2730 CH60_2730 lldD lldD 2949835 2950980 - L-lactate dehydrogenase cytochrome [C] COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases gene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2730 CH60_2731 CH60_2731 CH60_2731 2951025 2951198 - hypothetical protein gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2731 CH60_2732 CH60_2732 CH60_2732 2951277 2952554 - methylaspartate ammonia-lyase family protein [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2732 CH60_2733 CH60_2733 CH60_2733 2952586 2953428 - fumarylacetoacetate (FAA) hydrolase family protein [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1%2C7-dioic acid hydratase (catechol pathway) gene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2733 CH60_2734 CH60_2734 CH60_2734 2953476 2954216 - short chain dehydrogenase family protein [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2734 CH60_2735 CH60_2735 CH60_2735 2954644 2955066 + hypothetical protein conserved hypothetical protein~[S] COG3011 Uncharacterized protein conserved in bacteria gene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2735 CH60_2736 CH60_2736 CH60_2736 2955075 2956379 - major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2736 CH60_2737 CH60_2737 CH60_2737 2957405 2960275 + bacterial Ig-like domain family protein gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2737 CH60_2738 CH60_2738 CH60_2738 2960282 2960632 + intimin C-type lectin domain protein gene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2738 CH60_2739 CH60_2739 CH60_2739 2960776 2961093 - hypothetical protein conserved hypothetical protein~[S] COG2926 Uncharacterized protein conserved in bacteria gene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2739 CH60_274 CH60_274 CH60_274 281337 281846 + ferric uptake regulator family protein [P] COG0735 Fe2+/Zn2+ uptake regulation proteins gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_274 CH60_2740 CH60_2740 CH60_2740 2961527 2962636 - 3-beta hydroxysteroid dehydrogenase/isomerase family protein [MG] COG0451 Nucleoside-diphosphate-sugar epimerases gene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2740 CH60_2741 CH60_2741 CH60_2741 2962929 2964359 + hypothetical protein exonuclease C-terminal family protein~[L] COG2925 Exonuclease I gene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2741 CH60_2742 CH60_2742 CH60_2742 2965036 2966427 - amino acid permease family protein [E] COG0531 Amino acid transporters gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2742 CH60_2743 CH60_2743 CH60_2743 2966417 2966632 - hypothetical protein conserved hypothetical protein gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2743 CH60_2744 CH60_2744 CH60_2744 2966887 2967978 - iron-containing alcohol dehydrogenase family protein [C] COG0371 Glycerol dehydrogenase and related enzymes gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2744 CH60_2745 CH60_2745 CH60_2745 2968264 2969157 + ABC transporter family protein [G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2745 CH60_2746 CH60_2746 CH60_2746 2969115 2969837 + ABC transporter family protein [G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2746 CH60_2747 CH60_2747 CH60_2747 2969834 2970827 + branched-chain amino acid transport system / permease component family protein%3Bputative membrane protein pseudogene gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2747 CH60_2749 CH60_2749 CH60_2749 2971096 2971506 + putative exported protein gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2749 CH60_275 CH60_275 lexA lexA 281985 282593 - repressor LexA lexA: repressor LexA~[KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_275 CH60_2750 CH60_2750 CH60_2750 2971661 2972488 - rmlD substrate binding domain protein [MG] COG0451 Nucleoside-diphosphate-sugar epimerases gene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2750 CH60_2751 CH60_2751 hisG hisG 2973194 2974093 + ATP phosphoribosyltransferase hisG: ATP phosphoribosyltransferase~[E] COG0040 ATP phosphoribosyltransferase gene gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2751 CH60_2752 CH60_2752 hisD hisD 2974097 2975428 + histidinol dehydrogenase [E] COG0141 Histidinol dehydrogenase gene gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2752 CH60_2753 CH60_2753 hisC hisC 2975431 2976579 + histidinol-phosphate transaminase hisC: histidinol-phosphate transaminase~[E] COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase gene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2753 CH60_2754 CH60_2754 hisB hisB 2976576 2977643 + histidinol-phosphatase hisB_Nterm: histidinol-phosphatase~[E] COG0131 Imidazoleglycerol-phosphate dehydratase gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2754 CH60_2755 CH60_2755 hisH hisH 2977643 2978233 + imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit IMP_synth_hisH: imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit~[E] COG0118 Glutamine amidotransferase gene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2755 CH60_2756 CH60_2756 hisA hisA 2978239 2978976 + 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase [E] COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase gene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2756 CH60_2757 CH60_2757 hisF hisF 2978958 2979734 + imidazole glycerol phosphate synthase subunit hisF [E] COG0107 Imidazoleglycerol-phosphate synthase gene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2757 CH60_2758 CH60_2758 hisE hisE 2979728 2980342 + phosphoribosyl-ATP diphosphatase histidine_hisI: phosphoribosyl-ATP diphosphatase~[E] COG0139 Phosphoribosyl-AMP cyclohydrolase gene gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2758 CH60_2759 CH60_2759 gnd gnd 2980542 2981951 - 6-phosphogluconate dehydrogenase gnd: 6-phosphogluconate dehydrogenase~[G] COG0362 6-phosphogluconate dehydrogenase gene gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2759 CH60_276 CH60_276 dgkA dgkA 282718 283089 - diacylglycerol kinase [M] COG0818 Diacylglycerol kinase gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_276 CH60_2760 CH60_2760 galU galU 2982337 2983230 - UTP--glucose-1-phosphate uridylyltransferase galU: UTP--glucose-1-phosphate uridylyltransferase~[M] COG1210 UDP-glucose pyrophosphorylase gene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2760 CH60_2761 CH60_2761 galU galU 2983314 2984204 - UTP--glucose-1-phosphate uridylyltransferase galU: UTP--glucose-1-phosphate uridylyltransferase~[M] COG1210 UDP-glucose pyrophosphorylase gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2761 CH60_2762 CH60_2762 CH60_2762 2985150 2986964 + iucA / IucC family protein [Q] COG4264 Siderophore synthetase component gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2762 CH60_2763 CH60_2763 CH60_2763 2987177 2989438 + TonB-dependent siderophore receptor family protein tonB-siderophor: TonB-dependent siderophore receptor family protein~[P] COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid gene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2763 CH60_2764 CH60_2764 CH60_2764 2989528 2990607 + periplasmic binding family protein [P] COG0614 ABC-type Fe3+-hydroxamate transport system%2C periplasmic component gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2764 CH60_2765 CH60_2765 CH60_2765 2990604 2991644 + fecCD transport family protein [P] COG0609 ABC-type Fe3+-siderophore transport system%2C permease component gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2765 CH60_2766 CH60_2766 CH60_2766 2991631 2992671 + fecCD transport family protein [P] COG4779 ABC-type enterobactin transport system%2C permease component gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2766 CH60_2767 CH60_2767 CH60_2767 2992698 2993516 + ABC transporter family protein [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems%2C ATPase components gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2767 CH60_2768 CH60_2768 CH60_2768 2993625 2995469 - iucA / IucC family protein [Q] COG4264 Siderophore synthetase component gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2768 CH60_2769 CH60_2769 CH60_2769 2995466 2996044 - acetyltransferase domain protein [J] COG1670 Acetyltransferases%2C including N-acetylases of ribosomal proteins gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2769 CH60_277 CH60_277 plsB plsB 283217 285694 + glycerol-3-phosphate O-acyltransferase plsB: glycerol-3-phosphate O-acyltransferase~[I] COG2937 Glycerol-3-phosphate O-acyltransferase gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_277 CH60_2770 CH60_2770 CH60_2770 2996044 2997342 - pyridine nucleotide-disulfide oxidoreductase family protein [Q] COG3486 Lysine/ornithine N-monooxygenase gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2770 CH60_2771 CH60_2771 CH60_2771 2997377 2998924 - beta-eliminating lyase family protein [E] COG0076 Glutamate decarboxylase and related PLP-dependent proteins gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2771 CH60_2772 CH60_2772 fhuF fhuF 2999076 2999855 - siderophore-iron reductase FhuF fe_III_red_FhuF: siderophore-iron reductase FhuF~[R] COG4114 Uncharacterized Fe-S protein gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2772 CH60_2773 CH60_2773 CH60_2773 3000297 3001883 + integral membrane TerC family protein [R] COG1253 Hemolysins and related proteins containing CBS domains gene gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2773 CH60_2774 CH60_2774 CH60_2774 3002028 3003884 - asmA family protein [M] COG2982 Uncharacterized protein involved in outer membrane biogenesis gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2774 CH60_2775 CH60_2775 dcd dcd 3004071 3004652 - deoxycytidine triphosphate deaminase dCTP_deam: deoxycytidine triphosphate deaminase~[F] COG0717 Deoxycytidine deaminase gene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2775 CH60_2776 CH60_2776 udk udk 3004757 3005398 - uridine kinase udk: uridine kinase~[F] COG0572 Uridine kinase gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2776 CH60_2777 CH60_2777 CH60_2777 3005643 3006755 - 4Fe-4S iron sulfur cluster binding s%2C NifH/frxC family protein [D] COG0489 ATPases involved in chromosome partitioning gene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2777 CH60_2778 CH60_2778 metG metG 3007020 3009047 + methionine--tRNA ligase metG: methionine--tRNA ligase~[J] COG0143 Methionyl-tRNA synthetase gene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2778 CH60_2779 CH60_2779 CH60_2779 3009211 3009669 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2779 CH60_278 CH60_278 ubiA ubiA 285875 286741 - 4-hydroxybenzoate polyprenyl transferase ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase~[H] COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_278 CH60_2780 CH60_2780 CH60_2780 3009887 3010549 - putative membrane protein gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2780 CH60_2781 CH60_2781 CH60_2781 3011247 3012323 + periplasmic binding domain protein [G] COG1879 ABC-type sugar transport system%2C periplasmic component gene gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2781 CH60_2782 CH60_2782 CH60_2782 3012359 3013594 + LVIVD repeat family protein [S] COG5276 Uncharacterized conserved protein gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2782 CH60_2783 CH60_2783 CH60_2783 3013927 3015108 + major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2783 CH60_2784 CH60_2784 CH60_2784 3015350 3015757 + lrgA family protein [R] COG1380 Putative effector of murein hydrolase LrgA gene gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2784 CH60_2785 CH60_2785 yohK yohK 3015754 3016449 + inner membrane protein yohK [M] COG1346 Putative effector of murein hydrolase gene gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2785 CH60_2786 CH60_2786 cdd cdd 3016775 3017659 + cytidine deaminase cyt_deam_dimer: cytidine deaminase~[F] COG0295 Cytidine deaminase gene gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2786 CH60_2787 CH60_2787 CH60_2787 3018015 3019712 + malic enzyme%2C NAD binding domain protein [C] COG0281 Malic enzyme gene gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2787 CH60_2788 CH60_2788 CH60_2788 3019993 3020730 + hypothetical protein conserved hypothetical protein~[S] COG2949 Uncharacterized membrane protein gene gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2788 CH60_2789 CH60_2789 CH60_2789 3021175 3022185 - branched-chain amino acid transport system / permease component family protein [G] COG4211 ABC-type glucose/galactose transport system%2C permease component gene gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2789 CH60_279 CH60_279 CH60_279 286907 287431 - chorismate lyase family protein [H] COG3161 4-hydroxybenzoate synthetase (chorismate lyase) gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_279 CH60_2790 CH60_2790 CH60_2790 3022206 3023726 - ABC transporter family protein [G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2790 CH60_2791 CH60_2791 mglB mglB 3023956 3024948 - D-galactose-binding periplasmic protein [G] COG1879 ABC-type sugar transport system%2C periplasmic component gene gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2791 CH60_2792 CH60_2792 CH60_2792 3025696 3026862 - hypothetical protein conserved hypothetical protein~[S] COG2311 Predicted membrane protein gene gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2792 CH60_2793 CH60_2793 folE folE 3026917 3027579 - GTP cyclohydrolase I folE: GTP cyclohydrolase I~[H] COG0302 GTP cyclohydrolase I gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2793 CH60_2794 CH60_2794 CH60_2794 3027763 3028914 - major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2794 CH60_2795 CH60_2795 CH60_2795 3029050 3029919 + bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2795 CH60_2796 CH60_2796 CH60_2796 3030193 3031332 + S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase~[C] COG1062 Zn-dependent alcohol dehydrogenases%2C class III gene gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2796 CH60_2797 CH60_2797 fghA fghA 3031353 3032195 + S-formylglutathione hydrolase fghA_ester_D: S-formylglutathione hydrolase~[R] COG0627 Predicted esterase gene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2797 CH60_2798 CH60_2798 CH60_2798 3032464 3032664 + hypothetical protein conserved hypothetical protein gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2798 CH60_2799 CH60_2799 CH60_2799 3032748 3035108 + macB-like periplasmic core domain protein gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2799 CH60_28 CH60_28 yhjD yhjD 35576 36658 + inner membrane protein YhjD [S] COG1295 Predicted membrane protein gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_28 CH60_280 CH60_280 CH60_280 288263 292072 + outer membrane autotransporter barrel domain protein autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_280 CH60_2800 CH60_2800 CH60_2800 3035110 3036372 + efflux transporter%2C RND family%2C MFP subunit RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2800 CH60_2801 CH60_2801 CH60_2801 3036374 3037042 + ABC transporter family protein [V] COG1136 ABC-type antimicrobial peptide transport system%2C ATPase component gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2801 CH60_2802 CH60_2802 CH60_2802 3037052 3038362 + radical SAM additional 4Fe4S-binding SPASM domain protein rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain protein~[R] COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2802 CH60_2803 CH60_2803 CH60_2803 3038897 3040171 + molybdenum cofactor synthesis domain protein molyb_syn: molybdenum cofactor synthesis domain protein~[H] COG0303 Molybdopterin biosynthesis enzyme gene gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2803 CH60_2804 CH60_2804 moeB moeB 3040173 3040943 + molybdopterin synthase sulfurylase MoeB moeB: molybdopterin synthase sulfurylase MoeB~[H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2804 CH60_2805 CH60_2805 CH60_2805 3041110 3042318 + transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2805 CH60_2806 CH60_2806 CH60_2806 3042340 3042984 - hypothetical protein conserved hypothetical protein gene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2806 CH60_2807 CH60_2807 ccmA ccmA 3043212 3044807 - heme ABC exporter%2C ATP-binding protein CcmA ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2807 CH60_2808 CH60_2808 CH60_2808 3045490 3046113 + hypothetical protein conserved hypothetical protein gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2808 CH60_2809 CH60_2809 CH60_2809 3046325 3047692 - hypothetical protein impA-related N-terminal family protein~[S] COG3515 Uncharacterized protein conserved in bacteria gene gene2786 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2809 CH60_281 CH60_281 CH60_281 292416 294473 - fibronectin type III domain protein [C] COG0277 FAD/FMN-containing dehydrogenases gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_281 CH60_2810 CH60_2810 CH60_2810 3047717 3048169 - lysozyme family protein [S] COG3518 Uncharacterized protein conserved in bacteria gene gene2787 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2810 CH60_2811 CH60_2811 CH60_2811 3048169 3048657 - type VI secretion lipofamily protein [S] COG3521 Uncharacterized protein conserved in bacteria gene gene2788 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2811 CH60_2812 CH60_2812 CH60_2812 3048725 3049810 - hypothetical protein conserved hypothetical protein~[S] COG3520 Uncharacterized protein conserved in bacteria gene gene2789 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2812 CH60_2813 CH60_2813 CH60_2813 3049774 3051537 - hypothetical protein conserved hypothetical protein~[S] COG3519 Uncharacterized protein conserved in bacteria gene gene2790 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2813 CH60_2814 CH60_2814 CH60_2814 3051758 3052228 - hypothetical protein gene gene2791 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2814 CH60_2815 CH60_2815 CH60_2815 3052228 3053286 - PAAR motif family protein gene gene2792 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2815 CH60_2816 CH60_2816 CH60_2816 3053304 3054904 - hypothetical protein pseudogene gene2793 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2816 CH60_2818 CH60_2818 CH60_2818 3054948 3058370 - intracellular multiplication and macrophage-killing family protein [S] COG3523 Uncharacterized protein conserved in bacteria gene gene2794 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2818 CH60_2819 CH60_2819 CH60_2819 3058367 3059599 - hypothetical protein conserved hypothetical protein gene gene2795 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2819 CH60_282 CH60_282 CH60_282 295482 296801 - hypothetical protein conserved hypothetical protein gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_282 CH60_2820 CH60_2820 CH60_2820 3061545 3061712 - hypothetical protein gene gene2796 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2820 CH60_2821 CH60_2821 CH60_2821 3062407 3064590 - peptidase M23 family protein gene gene2798 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2821 CH60_2822 CH60_2822 CH60_2822 3062311 3062412 + hypothetical protein gene gene2797 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2822 CH60_2823 CH60_2823 CH60_2823 3064606 3064866 - hypothetical protein conserved hypothetical protein~[S] COG4253 Uncharacterized protein conserved in bacteria gene gene2799 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2823 CH60_2824 CH60_2824 CH60_2824 3065020 3065793 - putative exported protein gene gene2800 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2824 CH60_2825 CH60_2825 CH60_2825 3065790 3068090 - peptidase M23 family protein gene gene2801 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2825 CH60_2826 CH60_2826 CH60_2826 3068106 3070454 - Rhs element Vgr family protein vgr_GE: Rhs element Vgr family protein~[S] COG3501 Uncharacterized protein conserved in bacteria gene gene2802 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2826 CH60_2827 CH60_2827 clpV clpV 3070457 3073099 - type VI secretion ATPase%2C ClpV1 family VI_ClpV1: type VI secretion ATPase%2C ClpV1 family~[O] COG0542 ATPases with chaperone activity%2C ATP-binding subunit gene gene2803 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2827 CH60_2828 CH60_2828 CH60_2828 3073487 3073978 - type VI secretion system effector%2C Hcp1 family protein VI_effect_Hcp1: type VI secretion system effector%2C Hcp1 family protein~[S] COG3157 Hemolysin-coregulated protein (uncharacterized) gene gene2804 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2828 CH60_2829 CH60_2829 CH60_2829 3073982 3075718 - ompA family protein%3BompA-family membrane protein%3Bputative membrane protein pseudogene gene2805 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2829 CH60_283 CH60_283 CH60_283 297994 298248 - putative membrane protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_283 CH60_2832 CH60_2832 CH60_2832 3075718 3076404 - type IV/VI secretion system%2C DotU family domain protein IV_VI_DotU: type IV/VI secretion system%2C DotU family domain protein~[S] COG3455 Uncharacterized protein conserved in bacteria gene gene2806 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2832 CH60_2833 CH60_2833 CH60_2833 3076401 3077753 - hypothetical protein conserved hypothetical protein~[S] COG3522 Uncharacterized protein conserved in bacteria gene gene2807 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2833 CH60_2834 CH60_2834 CH60_2834 3077765 3079309 - hypothetical protein conserved hypothetical protein~[S] COG3517 Uncharacterized protein conserved in bacteria gene gene2808 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2834 CH60_2835 CH60_2835 CH60_2835 3079358 3079858 - hypothetical protein conserved hypothetical protein~[S] COG3516 Uncharacterized protein conserved in bacteria gene gene2809 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2835 CH60_2836 CH60_2836 CH60_2836 3080678 3080791 - hypothetical protein gene gene2810 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2836 CH60_2837 CH60_2837 pksC pksC 3080847 3081695 - polyketide biosynthesis malonyl CoA-acyl carrier protein transacylase pksC [I] COG0331 (acyl-carrier-protein) S-malonyltransferase gene gene2811 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2837 CH60_2838 CH60_2838 CH60_2838 3081794 3082042 - phosphopantetheine attachment site family protein [IQ] COG0236 Acyl carrier protein gene gene2812 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2838 CH60_2839 CH60_2839 CH60_2839 3082080 3082412 - lipocalin-like domain protein gene gene2813 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2839 CH60_284 CH60_284 CH60_284 298259 299002 - hypothetical protein pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_284 CH60_2840 CH60_2840 CH60_2840 3082607 3083395 - short chain dehydrogenase family protein [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2814 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2840 CH60_2841 CH60_2841 CH60_2841 3083398 3084150 - enoyl-CoA hydratase/isomerase family protein [I] COG1024 Enoyl-CoA hydratase/carnithine racemase gene gene2815 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2841 CH60_2842 CH60_2842 CH60_2842 3084152 3084871 - enoyl-CoA hydratase/isomerase family protein [I] COG1024 Enoyl-CoA hydratase/carnithine racemase gene gene2816 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2842 CH60_2843 CH60_2843 CH60_2843 3084864 3086102 - 3-Oxoacyl-[acyl-carrier-(ACP)] synthase III family protein [I] COG3425 3-hydroxy-3-methylglutaryl CoA synthase gene gene2817 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2843 CH60_2844 CH60_2844 CH60_2844 3086118 3086864 - short chain dehydrogenase family protein [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2818 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2844 CH60_2845 CH60_2845 CH60_2845 3086857 3088140 - hypothetical protein beta-ketoacyl synthase%2C C-terminal domain protein~[IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase gene gene2819 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2845 CH60_2846 CH60_2846 CH60_2846 3088130 3088654 - fabA-like domain protein [I] COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases gene gene2820 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2846 CH60_2847 CH60_2847 CH60_2847 3088918 3089238 - hypothetical protein conserved hypothetical protein gene gene2821 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2847 CH60_2848 CH60_2848 CH60_2848 3089867 3090613 + short chain dehydrogenase family protein [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2822 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2848 CH60_2849 CH60_2849 CH60_2849 3090767 3093184 + berberine and berberine like family protein [C] COG0277 FAD/FMN-containing dehydrogenases gene gene2823 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2849 CH60_285 CH60_285 CH60_285 299074 301452 - hypothetical protein papC N-terminal domain protein~[NU] COG3188 P pilus assembly protein%2C porin PapC gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_285 CH60_2850 CH60_2850 cnf1 cnf1 3093618 3094787 - cytotoxic necrotizing factor 1 domain protein gene gene2824 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2850 CH60_2851 CH60_2851 cnf1 cnf1 3094784 3095062 - cytotoxic necrotizing factor 1 domain protein gene gene2825 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2851 CH60_2852 CH60_2852 cnf1 cnf1 3095069 3095425 - cytotoxic necrotizing factor 1 domain protein gene gene2826 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2852 CH60_2853 CH60_2853 CH60_2853 3095795 3096082 - DDE domain protein [L] COG3316 Transposase and inactivated derivatives gene gene2827 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2853 CH60_2854 CH60_2854 CH60_2854 3096502 3096589 - tRNA-Ser tRNA gene2828 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2854 CH60_2855 CH60_2855 tusE tusE 3096830 3097159 + sulfur relay%2C TusE/DsrC/DsvC family protein dsrC_tusE_dsvC: sulfur relay%2C TusE/DsrC/DsvC family protein~[P] COG2920 Dissimilatory sulfite reductase (desulfoviridin)%2C gamma subunit gene gene2829 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2855 CH60_2856 CH60_2856 CH60_2856 3097211 3097489 - acylphosphatase family protein [C] COG1254 Acylphosphatases gene gene2830 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2856 CH60_2857 CH60_2857 CH60_2857 3097583 3098773 + met-10+ like-family protein [R] COG1092 Predicted SAM-dependent methyltransferases gene gene2831 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2857 CH60_2858 CH60_2858 CH60_2858 3098834 3099151 + hemimethylated DNA binding domain protein yccV: hemimethylated DNA binding domain protein~[S] COG3785 Uncharacterized conserved protein gene gene2832 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2858 CH60_2859 CH60_2859 CH60_2859 3099260 3099676 - coA binding domain protein [R] COG1832 Predicted CoA-binding protein gene gene2833 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2859 CH60_286 CH60_286 CH60_286 301703 302341 - hypothetical protein conserved hypothetical protein gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_286 CH60_2860 CH60_2860 CH60_2860 3099992 3100672 + hypothetical protein conserved hypothetical protein~[S] COG3110 Uncharacterized protein conserved in bacteria gene gene2834 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2860 CH60_2861 CH60_2861 mgsA mgsA 3100851 3101315 + methylglyoxal synthase MGSA: methylglyoxal synthase~[G] COG1803 Methylglyoxal synthase gene gene2835 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2861 CH60_2862 CH60_2862 CH60_2862 3101376 3103430 - hypothetical protein uvrD/REP helicase N-terminal domain protein~[L] COG0210 Superfamily I DNA and RNA helicases gene gene2836 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2862 CH60_2863 CH60_2863 CH60_2863 3103624 3104070 + hypothetical protein conserved hypothetical protein~[S] COG3304 Predicted membrane protein gene gene2837 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2863 CH60_2864 CH60_2864 CH60_2864 3104100 3106238 + integral membrane%2C YccS/YhfK family protein YCCS_YHJK: integral membrane%2C YccS/YhfK family protein~[S] COG1289 Predicted membrane protein gene gene2838 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2864 CH60_2865 CH60_2865 CH60_2865 3106340 3106975 - hypothetical protein tfoX N-terminal domain protein~[K] COG3070 Regulator of competence-specific genes gene gene2839 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2865 CH60_2866 CH60_2866 CH60_2866 3107204 3107710 + cell division inhibitor SulA family protein [D] COG5404 SOS-response cell division inhibitor%2C blocks FtsZ ring formation gene gene2840 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2866 CH60_2867 CH60_2867 ompA ompA 3108068 3109129 + outer membrane protein A [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins gene gene2841 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2867 CH60_2868 CH60_2868 CH60_2868 3109319 3109777 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene2842 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2868 CH60_2869 CH60_2869 CH60_2869 3109916 3110200 - ribosomal L25p family protein [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) gene gene2843 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2869 CH60_287 CH60_287 CH60_287 303054 303629 - terD domain protein [T] COG2310 Uncharacterized proteins involved in stress response%2C homologs of TerZ and putative cAMP-binding protein CABP1 gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_287 CH60_2870 CH60_2870 CH60_2870 3110362 3112119 - DEAD/DEAH box helicase family protein [KL] COG1061 DNA or RNA helicases of superfamily II gene gene2844 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2870 CH60_2871 CH60_2871 rsuA rsuA 3112633 3113340 + ribosomal small subunit pseudouridine synthase A [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases gene gene2845 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2871 CH60_2872 CH60_2872 CH60_2872 3113459 3114658 + drug resistance transporter%2C Bcr/CflA subfamily protein efflux_Bcr_CflA: drug resistance transporter%2C Bcr/CflA subfamily protein~[GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2846 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2872 CH60_2873 CH60_2873 CH60_2873 3115643 3115987 + yejG-like family protein gene gene2847 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2873 CH60_2874 CH60_2874 nikE nikE 3116048 3117640 - nickel import ATP-binding protein NikE nickel_nikE: nickel import ATP-binding protein NikE~[R] COG4172 ABC-type uncharacterized transport system%2C duplicated ATPase component gene gene2848 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2874 CH60_2875 CH60_2875 yejE yejE 3117642 3118667 - inner membrane ABC transporter permease protein yejE [R] COG4239 ABC-type uncharacterized transport system%2C permease component gene gene2849 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2875 CH60_2876 CH60_2876 yejB yejB 3118670 3119770 - inner membrane ABC transporter permease protein yejB [R] COG4174 ABC-type uncharacterized transport system%2C permease component gene gene2850 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2876 CH60_2877 CH60_2877 CH60_2877 3119780 3121588 - bacterial extracellular solute-binding s%2C 5 Middle family protein [E] COG4166 ABC-type oligopeptide transport system%2C periplasmic component gene gene2851 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2877 CH60_2878 CH60_2878 CH60_2878 3121670 3123043 - EAL domain protein [T] COG2200 FOG: EAL domain gene gene2852 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2878 CH60_2879 CH60_2879 rtn rtn 3123117 3123251 - rtn domain protein gene gene2853 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2879 CH60_288 CH60_288 CH60_288 303813 304391 - terD domain protein [T] COG2310 Uncharacterized proteins involved in stress response%2C homologs of TerZ and putative cAMP-binding protein CABP1 gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_288 CH60_2880 CH60_2880 CH60_2880 3123838 3124422 - nlpC/P60 family protein [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins) gene gene2854 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2880 CH60_2881 CH60_2881 CH60_2881 3124864 3125565 - PAP2 superfamily protein [I] COG0671 Membrane-associated phospholipid phosphatase gene gene2855 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2881 CH60_2882 CH60_2882 CH60_2882 3125624 3126607 - cobW/HypB/UreG%2C nucleotide-binding domain protein [R] COG0523 Putative GTPases (G3E family) gene gene2856 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2882 CH60_2883 CH60_2883 CH60_2883 3126923 3127249 + putative membrane protein gene gene2857 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2883 CH60_2884 CH60_2884 CH60_2884 3127415 3128158 + bacterial regulatory s%2C gntR family protein [K] COG2186 Transcriptional regulators gene gene2858 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2884 CH60_2885 CH60_2885 CH60_2885 3128302 3129774 - mannitol dehydrogenase Rossmann domain protein [G] COG0246 Mannitol-1-phosphate/altronate dehydrogenases gene gene2859 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2885 CH60_2886 CH60_2886 uxuA uxuA 3130359 3131552 + mannonate dehydratase uxuA: mannonate dehydratase~[G] COG1312 D-mannonate dehydratase gene gene2860 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2886 CH60_2887 CH60_2887 yeiP yeiP 3131692 3132264 - elongation factor P-like protein [J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) gene gene2861 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2887 CH60_2888 CH60_2888 CH60_2888 3132368 3133612 - aromatic amino acid transport family protein araaP: aromatic amino acid transport family protein~[E] COG0814 Amino acid permeases gene gene2862 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2888 CH60_2889 CH60_2889 CH60_2889 3134005 3134259 + putative zinc-/iron-chelating domain protein [R] COG0727 Predicted Fe-S-cluster oxidoreductase gene gene2863 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2889 CH60_289 CH60_289 CH60_289 304455 305492 - integral membrane%2C TerC family protein R_switched_Alx: integral membrane%2C TerC family protein~[P] COG0861 Membrane protein TerC%2C possibly involved in tellurium resistance gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_289 CH60_2890 CH60_2890 CH60_2890 3134328 3135143 - short chain dehydrogenase family protein [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene2864 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2890 CH60_2891 CH60_2891 CH60_2891 3135154 3136104 - D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain protein [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases gene gene2865 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2891 CH60_2892 CH60_2892 CH60_2892 3136116 3137258 - fumarylacetoacetate (FAA) hydrolase family protein [R] COG3970 Fumarylacetoacetate (FAA) hydrolase family protein gene gene2866 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2892 CH60_2893 CH60_2893 CH60_2893 3137610 3139106 + aldehyde dehydrogenase family protein [C] COG1012 NAD-dependent aldehyde dehydrogenases gene gene2867 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2893 CH60_2894 CH60_2894 xylB xylB 3139110 3140681 + xylulokinase xylB: xylulokinase~[G] COG1070 Sugar (pentulose and hexulose) kinases gene gene2868 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2894 CH60_2895 CH60_2895 rpiA rpiA 3140701 3141411 + ribose 5-phosphate isomerase A rpiA: ribose 5-phosphate isomerase A~[G] COG0120 Ribose 5-phosphate isomerase gene gene2869 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2895 CH60_2896 CH60_2896 CH60_2896 3141559 3142647 + periplasmic binding domain protein [G] COG1879 ABC-type sugar transport system%2C periplasmic component gene gene2870 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2896 CH60_2897 CH60_2897 CH60_2897 3142756 3144330 + ABC transporter family protein [G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene2871 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2897 CH60_2898 CH60_2898 CH60_2898 3144366 3145364 + branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene2872 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2898 CH60_2899 CH60_2899 CH60_2899 3145477 3145932 - NUDIX domain protein [F] COG1051 ADP-ribose pyrophosphatase gene gene2873 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2899 CH60_29 CH60_29 CH60_29 37436 39652 - asmA family protein [M] COG2982 Uncharacterized protein involved in outer membrane biogenesis gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_29 CH60_290 CH60_290 CH60_290 305514 305969 - tellurite resistance TerB family protein [P] COG3793 Tellurite resistance protein gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_290 CH60_2900 CH60_2900 CH60_2900 3146194 3147327 + phosphocarrier%2C HPr family protein PTS_HPr_: phosphocarrier%2C HPr family protein~[G] COG4668 Mannitol/fructose-specific phosphotransferase system%2C IIA domain gene gene2874 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2900 CH60_2901 CH60_2901 pfkB pfkB 3147324 3148262 + 1-phosphofructokinase pfkB: 1-phosphofructokinase~[G] COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) gene gene2875 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2901 CH60_2902 CH60_2902 CH60_2902 3148277 3149977 + PTS system%2C Fru family%2C IIB component domain protein FRU: PTS system%2C Fru family%2C IIB component domain protein~[G] COG1299 Phosphotransferase system%2C fructose-specific IIC component gene gene2876 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2902 CH60_2903 CH60_2903 CH60_2903 3150302 3150946 + hypothetical protein transcriptional regulatory%2C C terminal family protein~[K] COG3710 DNA-binding winged-HTH domains gene gene2877 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2903 CH60_2904 CH60_2904 CH60_2904 3150943 3151431 + putative protein psaF gene gene2878 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2904 CH60_2905 CH60_2905 myfA myfA 3151976 3152452 + fimbrial protein myfA gene gene2879 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2905 CH60_2906 CH60_2906 CH60_2906 3152774 3153400 + hypothetical protein pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD gene gene2880 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2906 CH60_2907 CH60_2907 CH60_2907 3153502 3155955 + hypothetical protein papC N-terminal domain protein~[NU] COG3188 P pilus assembly protein%2C porin PapC gene gene2881 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2907 CH60_2908 CH60_2908 CH60_2908 3156042 3156533 - apurinic endonuclease family protein nfo: apurinic endonuclease family protein~[L] COG0648 Endonuclease IV gene gene2882 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2908 CH60_2909 CH60_2909 CH60_2909 3156814 3157593 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene2883 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2909 CH60_291 CH60_291 CH60_291 306002 307186 - terD domain protein [R] COG4110 Uncharacterized protein involved in stress response gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_291 CH60_2910 CH60_2910 CH60_2910 3157593 3158615 - helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene2884 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2910 CH60_2911 CH60_2911 CH60_2911 3158629 3158808 - hypothetical protein [O] COG0435 Predicted glutathione S-transferase gene gene2885 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2911 CH60_2912 CH60_2912 CH60_2912 3158894 3159289 - SURF4 family protein [S] COG2259 Predicted membrane protein gene gene2886 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2912 CH60_2913 CH60_2913 CH60_2913 3159593 3159877 - yqjK-like family protein gene gene2887 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2913 CH60_2914 CH60_2914 CH60_2914 3159874 3160269 - hypothetical protein conserved hypothetical protein~[S] COG5393 Predicted membrane protein gene gene2888 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2914 CH60_2915 CH60_2915 CH60_2915 3160272 3160577 - hypothetical protein conserved hypothetical protein~[S] COG4575 Uncharacterized conserved protein gene gene2889 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2915 CH60_2916 CH60_2916 CH60_2916 3160732 3161112 - hypothetical protein conserved hypothetical protein gene gene2890 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2916 CH60_2917 CH60_2917 CH60_2917 3161338 3161727 - hypothetical protein secD export N-terminal TM region family protein gene gene2891 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2917 CH60_2918 CH60_2918 yqjA yqjA 3161724 3162422 - inner membrane protein YqjA [S] COG0586 Uncharacterized membrane-associated protein gene gene2892 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2918 CH60_2919 CH60_2919 CH60_2919 3162700 3163233 - putative lipoprotein gene gene2893 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2919 CH60_292 CH60_292 CH60_292 307186 307779 - terD domain protein [T] COG2310 Uncharacterized proteins involved in stress response%2C homologs of TerZ and putative cAMP-binding protein CABP1 gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_292 CH60_2920 CH60_2920 CH60_2920 3163482 3164276 - bacterial regulatory s%2C gntR family protein [K] COG2186 Transcriptional regulators gene gene2894 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2920 CH60_2921 CH60_2921 CH60_2921 3164539 3165840 - major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene2895 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2921 CH60_2922 CH60_2922 CH60_2922 3166588 3167997 + glucuronate isomerase family protein [G] COG1904 Glucuronate isomerase gene gene2896 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2922 CH60_2923 CH60_2923 CH60_2923 3168196 3169647 + mannitol dehydrogenase Rossmann domain protein [G] COG0246 Mannitol-1-phosphate/altronate dehydrogenases gene gene2897 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2923 CH60_2924 CH60_2924 CH60_2924 3169658 3171148 + hypothetical protein D-galactarate dehydratase / Altronate hydrolase%2C C terminus family protein~[G] COG2721 Altronate dehydratase gene gene2898 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2924 CH60_2925 CH60_2925 CH60_2925 3171301 3171831 + bacterial inner membrane family protein gene gene2899 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2925 CH60_2926 CH60_2926 CH60_2926 3171949 3172407 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene2900 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2926 CH60_2927 CH60_2927 CH60_2927 3172397 3172657 - hypothetical protein conserved hypothetical protein gene gene2901 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2927 CH60_2928 CH60_2928 CH60_2928 3172608 3173864 - dicarboxylate symporter family protein sodium:dicarboxylate symporter family protein~[E] COG3633 Na+/serine symporter gene gene2902 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2928 CH60_2929 CH60_2929 CH60_2929 3174399 3175394 - oxidoreductase%2C NAD-binding Rossmann fold family protein [R] COG0673 Predicted dehydrogenases and related proteins gene gene2903 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2929 CH60_293 CH60_293 CH60_293 308055 309116 + ATP-grasp in the biosynthetic pathway with Ter operon family protein gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_293 CH60_2930 CH60_2930 CH60_2930 3175612 3176121 - hypothetical protein conserved hypothetical protein~[R] COG1451 Predicted metal-dependent hydrolase gene gene2904 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2930 CH60_2931 CH60_2931 CH60_2931 3176360 3179349 - outer membrane autotransporter barrel domain protein pseudogene gene2905 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2931 CH60_2933 CH60_2933 CH60_2933 3179818 3181005 + methyltransferase small domain protein [J] COG2813 16S RNA G1207 methylase RsmC gene gene2906 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2933 CH60_2934 CH60_2934 CH60_2934 3181121 3183142 - flavin oxidoreductase / NADH oxidase family protein NADH:flavin oxidoreductase / NADH oxidase family protein~[C] COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme family gene gene2907 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2934 CH60_2935 CH60_2935 hdeD hdeD 3183355 3183924 - protein hdeD [S] COG3247 Uncharacterized conserved protein gene gene2908 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2935 CH60_2936 CH60_2936 CH60_2936 3184315 3185814 - kinase domain protein [RTKL] COG0515 Serine/threonine protein kinase gene gene2909 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2936 CH60_2937 CH60_2937 CH60_2937 3185846 3187579 - phosphatase 2C family protein gene gene2910 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2937 CH60_2938 CH60_2938 CH60_2938 3187579 3188619 - von Willebrand factor type A domain protein [R] COG4245 Uncharacterized protein encoded in toxicity protection region of plasmid R478%2C contains von Willebrand factor (vWF) domain gene gene2911 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2938 CH60_2939 CH60_2939 CH60_2939 3188721 3189359 - von Willebrand factor type A domain protein [R] COG4245 Uncharacterized protein encoded in toxicity protection region of plasmid R478%2C contains von Willebrand factor (vWF) domain gene gene2912 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2939 CH60_294 CH60_294 CH60_294 309131 310264 + phosphoribosyl transferase domain protein gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_294 CH60_2940 CH60_2940 CH60_2940 3189361 3190002 - terD domain protein [T] COG2310 Uncharacterized proteins involved in stress response%2C homologs of TerZ and putative cAMP-binding protein CABP1 gene gene2913 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2940 CH60_2941 CH60_2941 CH60_2941 3190035 3190673 - von Willebrand factor type A domain protein [R] COG4245 Uncharacterized protein encoded in toxicity protection region of plasmid R478%2C contains von Willebrand factor (vWF) domain gene gene2914 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2941 CH60_2942 CH60_2942 CH60_2942 3191388 3193076 + surface antigen family protein [U] COG2831 Hemolysin activation/secretion protein gene gene2915 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2942 CH60_2943 CH60_2943 CH60_2943 3193121 3203008 + hypothetical protein adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein~[U] COG3210 Large exoproteins involved in heme utilization or adhesion gene gene2916 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2943 CH60_2944 CH60_2944 CH60_2944 3203005 3203238 + putative membrane protein gene gene2917 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2944 CH60_2945 CH60_2945 CH60_2945 3203504 3203731 + hypothetical protein conserved hypothetical protein gene gene2918 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2945 CH60_2946 CH60_2946 CH60_2946 3203827 3204243 + immunity 38 family protein gene gene2919 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2946 CH60_2947 CH60_2947 CH60_2947 3204276 3205031 + putative adhesin/hemolysin [U] COG3210 Large exoproteins involved in heme utilization or adhesion gene gene2920 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2947 CH60_2948 CH60_2948 CH60_2948 3205527 3207812 - autotransporter beta-domain protein gene gene2921 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2948 CH60_2949 CH60_2949 CH60_2949 3207872 3208867 - metA-pathway of phenol degradation family protein gene gene2922 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2949 CH60_295 CH60_295 CH60_295 310257 311069 + hypothetical protein conserved hypothetical protein gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_295 CH60_2950 CH60_2950 CH60_2950 3208969 3210348 - glucoamylase family protein gene gene2923 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2950 CH60_2951 CH60_2951 CH60_2951 3210674 3211789 + ABC transporter family protein [G] COG3839 ABC-type sugar transport systems%2C ATPase components gene gene2924 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2951 CH60_2952 CH60_2952 CH60_2952 3211872 3215225 + hypothetical protein conserved hypothetical protein~[G] COG3459 Cellobiose phosphorylase gene gene2925 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2952 CH60_2953 CH60_2953 CH60_2953 3215334 3216320 + bacterial regulatory s%2C lacI family protein [K] COG1609 Transcriptional regulators gene gene2926 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2953 CH60_2954 CH60_2954 CH60_2954 3216397 3217641 + bacterial extracellular solute-binding family protein [G] COG1653 ABC-type sugar transport system%2C periplasmic component gene gene2927 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2954 CH60_2955 CH60_2955 CH60_2955 3217695 3218576 + binding--dependent transport system inner membrane component family protein [G] COG1175 ABC-type sugar transport systems%2C permease components gene gene2928 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2955 CH60_2956 CH60_2956 CH60_2956 3218576 3219394 + binding--dependent transport system inner membrane component family protein [G] COG0395 ABC-type sugar transport system%2C permease component gene gene2929 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2956 CH60_2957 CH60_2957 CH60_2957 3219394 3219906 + putative exported protein gene gene2930 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2957 CH60_2958 CH60_2958 CH60_2958 3219957 3222140 + hypothetical protein glycosyl hydrolase family 3 C-terminal domain protein~[G] COG1472 Beta-glucosidase-related glycosidases gene gene2931 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2958 CH60_2959 CH60_2959 CH60_2959 3222204 3223730 - outer membrane efflux family protein [MU] COG1538 Outer membrane protein gene gene2932 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2959 CH60_296 CH60_296 CH60_296 311062 312141 + phosphoribosyl transferase family protein gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_296 CH60_2960 CH60_2960 CH60_2960 3223735 3225636 - fusaric acid resistance family protein [S] COG1289 Predicted membrane protein gene gene2933 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2960 CH60_2961 CH60_2961 CH60_2961 3225620 3226669 - efflux transporter%2C RND family%2C MFP subunit RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[V] COG1566 Multidrug resistance efflux pump gene gene2934 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2961 CH60_2962 CH60_2962 CH60_2962 3226679 3227014 - putative membrane protein gene gene2935 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2962 CH60_2963 CH60_2963 CH60_2963 3227011 3227211 - hypothetical protein conserved hypothetical protein gene gene2936 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2963 CH60_2964 CH60_2964 CH60_2964 3227977 3229209 + beta-eliminating lyase family protein [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase gene gene2937 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2964 CH60_2965 CH60_2965 CH60_2965 3229202 3230653 + na+/H+ antiporter family protein [C] COG1757 Na+/H+ antiporter gene gene2938 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2965 CH60_2966 CH60_2966 CH60_2966 3230666 3231103 + polyketide cyclase / dehydrase and lipid transport family protein gene gene2939 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2966 CH60_2967 CH60_2967 CH60_2967 3231237 3231863 + HTH domain protein [S] COG2964 Uncharacterized protein conserved in bacteria gene gene2940 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2967 CH60_2968 CH60_2968 CH60_2968 3231879 3232259 + endoribonuclease L-PSP [J] COG0251 Putative translation initiation inhibitor%2C yjgF family gene gene2941 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2968 CH60_2969 CH60_2969 CH60_2969 3232544 3232948 + endoribonuclease L-PSP family protein [J] COG0251 Putative translation initiation inhibitor%2C yjgF family gene gene2942 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2969 CH60_297 CH60_297 CH60_297 312141 313100 + C-C Bond Lyase of the TIM-Barrel fold family protein [G] COG2301 Citrate lyase beta subunit gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_297 CH60_2970 CH60_2970 CH60_2970 3233163 3233465 - mono-oxygenase ydhR family protein gene gene2943 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2970 CH60_2971 CH60_2971 CH60_2971 3233725 3234441 - thioredoxin family protein [O] COG3531 Predicted protein-disulfide isomerase gene gene2944 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2971 CH60_2972 CH60_2972 CH60_2972 3234603 3235535 + bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene2945 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2972 CH60_2973 CH60_2973 CH60_2973 3235926 3236189 + putative fIC domain-containing protein gene gene2946 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2973 CH60_2974 CH60_2974 CH60_2974 3236494 3236652 - hypothetical protein conserved hypothetical protein gene gene2948 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2974 CH60_2975 CH60_2975 CH60_2975 3236186 3236497 + fic/DOC family protein [S] COG3177 Uncharacterized conserved protein gene gene2947 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2975 CH60_2976 CH60_2976 CH60_2976 3237208 3237438 + hypothetical protein conserved hypothetical protein gene gene2949 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2976 CH60_2977 CH60_2977 CH60_2977 3237571 3238953 + putative hNH endonuclease gene gene2950 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2977 CH60_2978 CH60_2978 CH60_2978 3238962 3239432 + hypothetical protein conserved hypothetical protein gene gene2951 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2978 CH60_2979 CH60_2979 CH60_2979 3239459 3239914 + hypothetical protein conserved hypothetical protein gene gene2952 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2979 CH60_298 CH60_298 CH60_298 313497 313985 + putative tellurite resistance protein gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_298 CH60_2980 CH60_2980 CH60_2980 3239931 3240065 + terminase small subunit [L] COG3728 Phage terminase%2C small subunit gene gene2953 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2980 CH60_2981 CH60_2981 CH60_2981 3240127 3241335 + transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene2954 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2981 CH60_2982 CH60_2982 CH60_2982 3241359 3241544 + terminase small subunit [L] COG3728 Phage terminase%2C small subunit gene gene2955 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2982 CH60_2983 CH60_2983 CH60_2983 3241522 3241860 + hypothetical protein conserved hypothetical protein gene gene2956 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2983 CH60_2984 CH60_2984 CH60_2984 3242106 3242182 - tRNA-Met tRNA gene2957 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2984 CH60_2985 CH60_2985 rpoD rpoD 3242378 3244216 - RNA polymerase sigma factor RpoD rpoD_Cterm: RNA polymerase sigma factor RpoD~[K] COG0568 DNA-directed RNA polymerase%2C sigma subunit (sigma70/sigma32) gene gene2958 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2985 CH60_2986 CH60_2986 dnaG dnaG 3244374 3246122 - DNA primase dnaG: DNA primase~[L] COG0358 DNA primase (bacterial type) gene gene2959 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2986 CH60_2987 CH60_2987 rpsU rpsU 3246258 3246473 - ribosomal protein S21 S21p: ribosomal protein S21~[J] COG0828 Ribosomal protein S21 gene gene2960 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2987 CH60_2988 CH60_2988 tsaD tsaD 3246879 3247892 + tRNA threonylcarbamoyl adenosine modification protein TsaD T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD~[O] COG0533 Metal-dependent proteases with possible chaperone activity gene gene2961 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2988 CH60_2989 CH60_2989 plsY plsY 3248138 3248788 - acyl-phosphate glycerol 3-phosphate acyltransferase [S] COG0344 Predicted membrane protein gene gene2962 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2989 CH60_299 CH60_299 CH60_299 314300 315100 + methylenetetrahydrofolate reductase family protein [E] COG0685 5%2C10-methylenetetrahydrofolate reductase gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_299 CH60_2990 CH60_2990 folB folB 3248896 3249255 + dihydroneopterin aldolase folB: dihydroneopterin aldolase~[H] COG1539 Dihydroneopterin aldolase gene gene2963 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2990 CH60_2991 CH60_2991 uppP uppP 3249529 3250347 + undecaprenyl-diphosphatase UppP undec_PP_bacA: undecaprenyl-diphosphatase UppP~[V] COG1968 Uncharacterized bacitracin resistance protein gene gene2964 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2991 CH60_2992 CH60_2992 CH60_2992 3250583 3251821 - poly A polymerase head domain protein [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase gene gene2965 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2992 CH60_2993 CH60_2993 CH60_2993 3251981 3252604 - bacterial SH3 domain protein [T] COG3103 SH3 domain protein gene gene2966 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2993 CH60_2994 CH60_2994 CH60_2994 3252908 3254215 + CYTH domain protein [S] COG3025 Uncharacterized conserved protein gene gene2967 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2994 CH60_2995 CH60_2995 CH60_2995 3254386 3257241 + glutamate-ammonia ligase adenylyltransferase family protein [OT] COG1391 Glutamine synthetase adenylyltransferase gene gene2968 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2995 CH60_2996 CH60_2996 rfaE1 rfaE1 3257376 3258806 + bifunctional protein RfaE%2C domain I rfaE_dom_I: bifunctional protein RfaE%2C domain I~[M] COG2870 ADP-heptose synthase%2C bifunctional sugar kinase/adenylyltransferase gene gene2969 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2996 CH60_2997 CH60_2997 CH60_2997 3258843 3260093 + amino acid permease family protein [E] COG0531 Amino acid transporters gene gene2970 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2997 CH60_2998 CH60_2998 CH60_2998 3260418 3260699 - membrane fusogenic activity family protein [S] COG2960 Uncharacterized protein conserved in bacteria gene gene2971 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2998 CH60_2999 CH60_2999 CH60_2999 3260735 3261079 - hypothetical protein gene gene2972 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_2999 CH60_3 CH60_3 CH60_3 2366 3373 - pfkB carbohydrate kinase family protein [G] COG0524 Sugar kinases%2C ribokinase family gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3 CH60_30 CH60_30 CH60_30 36662 37459 + CDP-diacylglycerol pyrophosphatase family protein [I] COG2134 CDP-diacylglycerol pyrophosphatase gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_30 CH60_300 CH60_300 hutW hutW 315441 316754 + putative heme utilization radical SAM enzyme HutW rSAM_HutW: putative heme utilization radical SAM enzyme HutW~[H] COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_300 CH60_3000 CH60_3000 ribB ribB 3261268 3261921 + 3%2C4-dihydroxy-2-butanone-4-phosphate synthase ribB: 3%2C4-dihydroxy-2-butanone-4-phosphate synthase~[H] COG0108 3%2C4-dihydroxy-2-butanone 4-phosphate synthase gene gene2973 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3000 CH60_3001 CH60_3001 CH60_3001 3262380 3263162 + catalytic LigB subunit of aromatic ring-opening dioxygenase family protein [S] COG3384 Uncharacterized conserved protein gene gene2974 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3001 CH60_3002 CH60_3002 CH60_3002 3263323 3264483 - glutathionylspermidine synthase preATP-grasp family protein [E] COG0754 Glutathionylspermidine synthase gene gene2975 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3002 CH60_3003 CH60_3003 CH60_3003 3264493 3265176 - hypothetical protein conserved hypothetical protein~[S] COG5463 Predicted integral membrane protein gene gene2976 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3003 CH60_3004 CH60_3004 CH60_3004 3265245 3265415 + hypothetical protein conserved hypothetical protein gene gene2977 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3004 CH60_3005 CH60_3005 CH60_3005 3265480 3266877 - type I secretion outer membrane%2C TolC family protein type_I_sec_TolC: type I secretion outer membrane%2C TolC family protein~[MU] COG1538 Outer membrane protein gene gene2978 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3005 CH60_3006 CH60_3006 CH60_3006 3267273 3267905 + nudix-type nucleoside diphosphatase%2C YffH/AdpP family protein [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene2979 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3006 CH60_3007 CH60_3007 CH60_3007 3267939 3268364 + hypothetical protein conserved hypothetical protein~[S] COG3151 Uncharacterized protein conserved in bacteria gene gene2980 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3007 CH60_3008 CH60_3008 CH60_3008 3268446 3269273 + calcineurin-like phosphoesterase family protein [R] COG1409 Predicted phosphohydrolases gene gene2981 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3008 CH60_3009 CH60_3009 CH60_3009 3269273 3269854 + hypothetical protein conserved hypothetical protein~[R] COG3150 Predicted esterase gene gene2982 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3009 CH60_301 CH60_301 CH60_301 316805 317314 + hypothetical protein conserved hypothetical protein~[P] COG3721 Putative heme iron utilization protein gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_301 CH60_3010 CH60_3010 parE parE 3269956 3271851 + DNA topoisomerase IV%2C B subunit parE_Gneg: DNA topoisomerase IV%2C B subunit~[L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II%2C topoisomerase IV)%2C B subunit gene gene2983 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3010 CH60_3011 CH60_3011 CH60_3011 3271855 3272766 + bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene2984 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3011 CH60_3012 CH60_3012 CH60_3012 3272824 3273408 - flavodoxin-like fold family protein [R] COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) gene gene2985 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3012 CH60_3013 CH60_3013 parC parC 3273712 3275985 + DNA topoisomerase IV%2C A subunit parC_Gneg: DNA topoisomerase IV%2C A subunit~[L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II%2C topoisomerase IV)%2C A subunit gene gene2986 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3013 CH60_3014 CH60_3014 CH60_3014 3276274 3277005 + 1-acylglycerol-3-phosphate O-acyltransferases domain protein AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases domain protein~[I] COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase gene gene2987 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3014 CH60_3015 CH60_3015 CH60_3015 3277184 3278608 + multicopper oxidase family protein [Q] COG2132 Putative multicopper oxidases gene gene2988 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3015 CH60_3016 CH60_3016 CH60_3016 3278916 3280463 + radical SAM superfamily protein [C] COG1032 Fe-S oxidoreductase gene gene2989 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3016 CH60_3017 CH60_3017 CH60_3017 3280448 3281260 + hypothetical protein conserved hypothetical protein~[C] COG1032 Fe-S oxidoreductase gene gene2990 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3017 CH60_3018 CH60_3018 CH60_3018 3281282 3282115 - aldo/keto reductase family protein [R] COG0656 Aldo/keto reductases%2C related to diketogulonate reductase gene gene2991 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3018 CH60_3019 CH60_3019 yqhD yqhD 3282514 3283671 - alcohol dehydrogenase YqhD [C] COG1979 Uncharacterized oxidoreductases%2C Fe-dependent alcohol dehydrogenase family gene gene2992 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3019 CH60_302 CH60_302 CH60_302 317348 317998 + trkA-N domain protein [MG] COG0702 Predicted nucleoside-diphosphate-sugar epimerases gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_302 CH60_3020 CH60_3020 CH60_3020 3284069 3284962 + helix-turn-helix domain protein [K] COG2207 AraC-type DNA-binding domain-containing proteins gene gene2993 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3020 CH60_3021 CH60_3021 CH60_3021 3285054 3285716 - hypothetical protein conserved hypothetical protein~[S] COG0586 Uncharacterized membrane-associated protein gene gene2994 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3021 CH60_3022 CH60_3022 metC metC 3285909 3287120 - cystathionine beta-lyase cysta_beta_ly_B: cystathionine beta-lyase~[E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases gene gene2995 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3022 CH60_3023 CH60_3023 exbB exbB 3287599 3288636 + tonB-system energizer ExbB exbB: tonB-system energizer ExbB~[U] COG0811 Biopolymer transport proteins gene gene2996 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3023 CH60_3024 CH60_3024 CH60_3024 3289017 3289202 - hypothetical protein conserved hypothetical protein gene gene2998 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3024 CH60_3025 CH60_3025 exbD exbD 3288640 3289071 + TonB system transport protein ExbD exbD_1: TonB system transport protein ExbD~[U] COG0848 Biopolymer transport protein gene gene2997 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3025 CH60_3026 CH60_3026 CH60_3026 3289168 3290724 - von Willebrand factor type A domain protein [U] COG4961 Flp pilus assembly protein TadG gene gene2999 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3026 CH60_3027 CH60_3027 CH60_3027 3290749 3291321 - putative tight adherance operon protein gene gene3000 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3027 CH60_3028 CH60_3028 CH60_3028 3291305 3291778 - tadE-like family protein gene gene3001 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3028 CH60_3029 CH60_3029 CH60_3029 3291775 3292545 - TPR repeat family protein [U] COG5010 Flp pilus assembly protein TadD%2C contains TPR repeats gene gene3002 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3029 CH60_303 CH60_303 CH60_303 318084 318275 + hemin uptake hemP family protein gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_303 CH60_3030 CH60_3030 CH60_3030 3292529 3293362 - type II secretion system (T2SS)%2C F family protein [NU] COG2064 Flp pilus assembly protein TadC gene gene3003 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3030 CH60_3031 CH60_3031 CH60_3031 3293359 3294234 - type II secretion system (T2SS)%2C F family protein [U] COG4965 Flp pilus assembly protein TadB gene gene3004 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3031 CH60_3032 CH60_3032 CH60_3032 3294231 3295517 - ATP synthase alpha/beta family%2C nucleotide-binding domain protein [U] COG4962 Flp pilus assembly protein%2C ATPase CpaF gene gene3005 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3032 CH60_3033 CH60_3033 CH60_3033 3295529 3296656 - hypothetical protein conserved hypothetical protein~[U] COG4963 Flp pilus assembly protein%2C ATPase CpaE gene gene3006 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3033 CH60_3034 CH60_3034 CH60_3034 3296667 3296957 - hypothetical protein conserved hypothetical protein gene gene3007 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3034 CH60_3035 CH60_3035 CH60_3035 3296954 3297376 - bacterial type II and III secretion system family protein [U] COG4964 Flp pilus assembly protein%2C secretin CpaC gene gene3008 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3035 CH60_3036 CH60_3036 CH60_3036 3297418 3298272 - bacterial type II and III secretion system family protein [U] COG4964 Flp pilus assembly protein%2C secretin CpaC gene gene3009 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3036 CH60_3037 CH60_3037 CH60_3037 3298269 3299135 - putative membrane protein gene gene3010 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3037 CH60_3038 CH60_3038 CH60_3038 3299187 3299609 - type IV leader peptidase family protein [OU] COG4960 Flp pilus assembly protein%2C protease CpaA gene gene3011 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3038 CH60_3039 CH60_3039 CH60_3039 3299809 3300267 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene3012 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3039 CH60_304 CH60_304 CH60_304 318405 320435 + TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein tonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein~[P] COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_304 CH60_3040 CH60_3040 CH60_3040 3300620 3303100 + hypothetical protein papC N-terminal domain protein~[NU] COG3188 P pilus assembly protein%2C porin PapC gene gene3013 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3040 CH60_3041 CH60_3041 papD papD 3303118 3303837 + chaperone protein papD [NU] COG3121 P pilus assembly protein%2C chaperone PapD gene gene3014 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3041 CH60_3042 CH60_3042 CH60_3042 3303862 3304968 + fimbrial family protein [NU] COG3539 P pilus assembly protein%2C pilin FimA gene gene3015 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3042 CH60_3043 CH60_3043 CH60_3043 3305180 3306259 - periplasmic binding family protein [P] COG4592 ABC-type Fe2+-enterobactin transport system%2C periplasmic component gene gene3016 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3043 CH60_3044 CH60_3044 CH60_3044 3307115 3308110 + putative exported protein [S] COG4461 Uncharacterized protein conserved in bacteria%2C putative lipoprotein gene gene3017 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3044 CH60_3045 CH60_3045 CH60_3045 3308202 3308771 - hypothetical protein conserved hypothetical protein gene gene3018 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3045 CH60_3046 CH60_3046 CH60_3046 3308965 3309798 - FHIPEP family protein [NU] COG1298 Flagellar biosynthesis pathway%2C component FlhA gene gene3019 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3046 CH60_3047 CH60_3047 CH60_3047 3309761 3311062 - FHIPEP family protein [NU] COG1298 Flagellar biosynthesis pathway%2C component FlhA gene gene3020 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3047 CH60_3048 CH60_3048 flhB flhB 3311049 3312182 - flagellar biosynthetic protein FlhB flhB: flagellar biosynthetic protein FlhB~[NU] COG1377 Flagellar biosynthesis pathway%2C component FlhB gene gene3021 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3048 CH60_3049 CH60_3049 fliR fliR 3312182 3312955 - flagellar biosynthetic protein FliR fliR: flagellar biosynthetic protein FliR~[NU] COG1684 Flagellar biosynthesis pathway%2C component FliR gene gene3022 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3049 CH60_305 CH60_305 hemS hemS 320554 321591 + hemin transport protein hemS [P] COG3720 Putative heme degradation protein gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_305 CH60_3050 CH60_3050 fliQ fliQ 3312962 3313234 - flagellar biosynthetic protein FliQ fliQ: flagellar biosynthetic protein FliQ~[NU] COG1987 Flagellar biosynthesis pathway%2C component FliQ gene gene3023 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3050 CH60_3051 CH60_3051 fliP fliP 3313236 3314006 - flagellar biosynthetic protein FliP fliP: flagellar biosynthetic protein FliP~[NU] COG1338 Flagellar biosynthesis pathway%2C component FliP gene gene3024 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3051 CH60_3052 CH60_3052 fliN fliN 3314003 3314416 - flagellar motor switch protein FliN fliN: flagellar motor switch protein FliN~[NU] COG1886 Flagellar motor switch/type III secretory pathway protein gene gene3025 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3052 CH60_3053 CH60_3053 CH60_3053 3314409 3315308 - surface presentation of antigens family protein gene gene3026 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3053 CH60_3054 CH60_3054 CH60_3054 3315834 3316859 + AAA domain family protein [T] COG2204 Response regulator containing CheY-like receiver%2C AAA-type ATPase%2C and DNA-binding domains gene gene3027 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3054 CH60_3055 CH60_3055 fliE fliE 3316876 3317256 + flagellar hook-basal body complex protein FliE fliE: flagellar hook-basal body complex protein FliE~[NU] COG1677 Flagellar hook-basal body protein gene gene3028 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3055 CH60_3056 CH60_3056 fliF fliF 3317266 3318906 + flagellar M-ring protein FliF fliF: flagellar M-ring protein FliF~[NU] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein gene gene3029 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3056 CH60_3057 CH60_3057 CH60_3057 3318878 3319921 + fliG middle domain protein [N] COG1536 Flagellar motor switch protein gene gene3030 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3057 CH60_3058 CH60_3058 CH60_3058 3319926 3320642 + hypothetical protein essential Yae1%2C N terminal family protein~[NU] COG1317 Flagellar biosynthesis/type III secretory pathway protein gene gene3031 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3058 CH60_3059 CH60_3059 CH60_3059 3320635 3321975 + ATPase%2C FliI/YscN family protein fliI_yscN: ATPase%2C FliI/YscN family protein~[NU] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase gene gene3032 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3059 CH60_306 CH60_306 hmuT hmuT 321588 322427 + hemin-binding periplasmic protein hmuT [P] COG4558 ABC-type hemin transport system%2C periplasmic component gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_306 CH60_3060 CH60_3060 fliJ fliJ 3321979 3322416 + flagellar export protein FliJ flagell_FliJ: flagellar export protein FliJ gene gene3033 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3060 CH60_3061 CH60_3061 CH60_3061 3322744 3323169 - flgN family protein gene gene3034 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3061 CH60_3062 CH60_3062 flgM flgM 3323176 3323442 - flagellar biosynthesis anti-sigma factor FlgM flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM gene gene3035 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3062 CH60_3063 CH60_3063 flgA flgA 3323671 3324519 - flagella basal body P-ring formation protein FlgA flgA_cterm: flagella basal body P-ring formation protein FlgA~[NO] COG1261 Flagellar basal body P-ring biosynthesis protein gene gene3036 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3063 CH60_3064 CH60_3064 flgB flgB 3324577 3325023 + flagellar basal-body rod protein FlgB flgB: flagellar basal-body rod protein FlgB~[N] COG1815 Flagellar basal body protein gene gene3037 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3064 CH60_3065 CH60_3065 flgC flgC 3325026 3325451 + flagellar basal-body rod protein FlgC flgC: flagellar basal-body rod protein FlgC~[N] COG1558 Flagellar basal body rod protein gene gene3038 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3065 CH60_3066 CH60_3066 CH60_3066 3325454 3326110 + hypothetical protein flagellar hook capping - N-terminal region family protein~[N] COG1843 Flagellar hook capping protein gene gene3039 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3066 CH60_3067 CH60_3067 CH60_3067 3326165 3327406 + flagellar hook-basal body family protein flgEFG_subfam: flagellar hook-basal body family protein~[N] COG1749 Flagellar hook protein FlgE gene gene3040 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3067 CH60_3068 CH60_3068 flgF flgF 3327406 3328137 + flagellar basal-body rod protein FlgF flgF: flagellar basal-body rod protein FlgF~[N] COG4787 Flagellar basal body rod protein gene gene3041 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3068 CH60_3069 CH60_3069 flgG flgG 3328205 3328990 + flagellar basal-body rod protein FlgG flgG_G_neg: flagellar basal-body rod protein FlgG~[N] COG4786 Flagellar basal body rod protein gene gene3042 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3069 CH60_307 CH60_307 CH60_307 322424 323428 + fecCD transport family protein [P] COG0609 ABC-type Fe3+-siderophore transport system%2C permease component gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_307 CH60_3070 CH60_3070 CH60_3070 3329052 3329690 + flagellar L-ring family protein [N] COG2063 Flagellar basal body L-ring protein gene gene3043 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3070 CH60_3071 CH60_3071 CH60_3071 3329821 3330879 + flagellar P-ring family protein [N] COG1706 Flagellar basal-body P-ring protein gene gene3044 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3071 CH60_3072 CH60_3072 CH60_3072 3330889 3331182 + rod binding family protein [MNO] COG3951 Rod binding protein gene gene3045 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3072 CH60_3073 CH60_3073 flgK flgK 3331295 3332656 + flagellar hook-associated protein FlgK flgK_ends: flagellar hook-associated protein FlgK~[N] COG1256 Flagellar hook-associated protein gene gene3046 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3073 CH60_3074 CH60_3074 flgL flgL 3332685 3333608 + flagellar hook-associated protein 3 flagell_flgL: flagellar hook-associated protein 3~[N] COG1344 Flagellin and related hook-associated proteins gene gene3047 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3074 CH60_3075 CH60_3075 CH60_3075 3333620 3334633 + putative flagellar hook associated protein lafW gene gene3048 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3075 CH60_3076 CH60_3076 CH60_3076 3334797 3335243 - hypothetical protein conserved hypothetical protein gene gene3049 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3076 CH60_3077 CH60_3077 CH60_3077 3335224 3336270 - hypothetical protein transcriptional regulatory%2C C terminal family protein~[K] COG3710 DNA-binding winged-HTH domains gene gene3050 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3077 CH60_3078 CH60_3078 CH60_3078 3336896 3338101 + hypothetical protein bacterial flagellin C-terminal helical region family protein~[N] COG1344 Flagellin and related hook-associated proteins gene gene3051 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3078 CH60_3079 CH60_3079 CH60_3079 3338660 3339856 + hypothetical protein bacterial flagellin C-terminal helical region family protein~[N] COG1344 Flagellin and related hook-associated proteins gene gene3052 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3079 CH60_308 CH60_308 hmuV hmuV 323421 324221 + hemin import ATP-binding protein HmuV [P] COG4559 ABC-type hemin transport system%2C ATPase component gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_308 CH60_3080 CH60_3080 CH60_3080 3340369 3341568 + hypothetical protein bacterial flagellin C-terminal helical region family protein~[N] COG1344 Flagellin and related hook-associated proteins gene gene3053 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3080 CH60_3081 CH60_3081 CH60_3081 3341851 3343056 + hypothetical protein bacterial flagellin C-terminal helical region family protein~[N] COG1344 Flagellin and related hook-associated proteins gene gene3054 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3081 CH60_3082 CH60_3082 CH60_3082 3343339 3344379 + hypothetical protein bacterial flagellin N-terminal helical region family protein~[N] COG1344 Flagellin and related hook-associated proteins gene gene3055 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3082 CH60_3083 CH60_3083 CH60_3083 3344376 3344540 + hypothetical protein bacterial flagellin C-terminal helical region family protein~[N] COG1344 Flagellin and related hook-associated proteins gene gene3056 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3083 CH60_3084 CH60_3084 CH60_3084 3344760 3346037 + flagellar hook-associated family protein [N] COG1345 Flagellar capping protein gene gene3057 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3084 CH60_3085 CH60_3085 fliS fliS 3346047 3346427 + flagellar protein FliS fliS: flagellar protein FliS~[NUO] COG1516 Flagellin-specific chaperone FliS gene gene3058 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3085 CH60_3086 CH60_3086 CH60_3086 3346429 3346755 + putative flagellar protein lafD gene gene3059 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3086 CH60_3087 CH60_3087 CH60_3087 3346757 3347914 + flagellar hook-length control FliK family protein [N] COG3144 Flagellar hook-length control protein gene gene3060 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3087 CH60_3088 CH60_3088 CH60_3088 3347953 3348423 + flagellar basal body-associated FliL family protein gene gene3061 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3088 CH60_3089 CH60_3089 CH60_3089 3348429 3349124 + RNA polymerase sigma factor%2C FliA/WhiG family protein fliA_WhiG: RNA polymerase sigma factor%2C FliA/WhiG family protein~[K] COG1191 DNA-directed RNA polymerase specialized sigma subunit gene gene3062 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3089 CH60_309 CH60_309 metC metC 324362 325543 - cystathionine beta-lyase cysta_beta_ly_B: cystathionine beta-lyase~[E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_309 CH60_3090 CH60_3090 motA motA 3349140 3350006 + flagellar motor stator protein MotA motA1: flagellar motor stator protein MotA~[N] COG1291 Flagellar motor component gene gene3063 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3090 CH60_3091 CH60_3091 CH60_3091 3350006 3350917 + membrane MotB of proton-channel complex MotA/MotB family protein [N] COG1360 Flagellar motor protein gene gene3064 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3091 CH60_3092 CH60_3092 CH60_3092 3351377 3351973 + hypothetical protein conserved hypothetical protein gene gene3065 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3092 CH60_3093 CH60_3093 CH60_3093 3351973 3352425 + putative membrane protein gene gene3066 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3093 CH60_3094 CH60_3094 CH60_3094 3352409 3352780 + hypothetical protein conserved hypothetical protein gene gene3067 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3094 CH60_3095 CH60_3095 slyB slyB 3352933 3353124 - outer membrane lipoprotein slyB [M] COG3133 Outer membrane lipoprotein gene gene3068 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3095 CH60_3096 CH60_3096 CH60_3096 3353222 3353401 - putative outer membrane lipoprotein pcp [M] COG3133 Outer membrane lipoprotein gene gene3069 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3096 CH60_3097 CH60_3097 CH60_3097 3354494 3355009 + transposase family protein [L] COG2963 Transposase and inactivated derivatives gene gene3070 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3097 CH60_3098 CH60_3098 CH60_3098 3355738 3356964 - hypothetical protein conserved hypothetical protein~[S] COG3519 Uncharacterized protein conserved in bacteria gene gene3072 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3098 CH60_3099 CH60_3099 CH60_3099 3355063 3355848 + integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene3071 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3099 CH60_31 CH60_31 CH60_31 39957 40802 - EAL domain protein [T] COG2200 FOG: EAL domain gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_31 CH60_310 CH60_310 CH60_310 325589 326875 - putative membrane protein [E] COG0814 Amino acid permeases gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_310 CH60_3100 CH60_3100 CH60_3100 3356964 3357404 - lysozyme family protein [S] COG3518 Uncharacterized protein conserved in bacteria gene gene3073 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3100 CH60_3101 CH60_3101 CH60_3101 3357411 3358892 - hypothetical protein conserved hypothetical protein~[S] COG3517 Uncharacterized protein conserved in bacteria gene gene3074 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3101 CH60_3102 CH60_3102 CH60_3102 3358960 3359457 - hypothetical protein conserved hypothetical protein~[S] COG3516 Uncharacterized protein conserved in bacteria gene gene3075 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3102 CH60_3103 CH60_3103 CH60_3103 3359981 3360499 + type VI secretion system effector%2C Hcp1 family protein VI_effect_Hcp1: type VI secretion system effector%2C Hcp1 family protein~[S] COG3157 Hemolysin-coregulated protein (uncharacterized) gene gene3076 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3103 CH60_3104 CH60_3104 CH60_3104 3360651 3361061 - hypothetical protein conserved hypothetical protein gene gene3077 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3104 CH60_3105 CH60_3105 CH60_3105 3361400 3362311 - maltose operon periplasmic family protein gene gene3078 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3105 CH60_3106 CH60_3106 lamB lamB 3362552 3363823 - maltoporin [G] COG4580 Maltoporin (phage lambda and maltose receptor) gene gene3079 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3106 CH60_3107 CH60_3107 malK malK 3363894 3365003 - maltose/maltodextrin import ATP-binding protein MalK [G] COG3839 ABC-type sugar transport systems%2C ATPase components gene gene3080 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3107 CH60_3108 CH60_3108 CH60_3108 3365007 3365243 - putative glycosidase gene gene3081 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3108 CH60_3109 CH60_3109 malE malE 3365831 3367042 + maltose-binding periplasmic protein [G] COG2182 Maltose-binding periplasmic proteins/domains gene gene3082 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3109 CH60_311 CH60_311 CH60_311 327045 328028 + bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_311 CH60_3110 CH60_3110 CH60_3110 3367229 3368806 + binding--dependent transport system inner membrane component family protein [G] COG1175 ABC-type sugar transport systems%2C permease components gene gene3083 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3110 CH60_3111 CH60_3111 CH60_3111 3368820 3369710 + binding--dependent transport system inner membrane component family protein [G] COG3833 ABC-type maltose transport systems%2C permease component gene gene3084 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3111 CH60_3112 CH60_3112 CH60_3112 3369853 3370260 - phosphate-starvation-inducible E family protein [S] COG3223 Predicted membrane protein gene gene3085 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3112 CH60_3113 CH60_3113 pgi pgi 3370395 3372041 - glucose-6-phosphate isomerase [G] COG0166 Glucose-6-phosphate isomerase gene gene3086 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3113 CH60_3114 CH60_3114 CH60_3114 3372411 3373796 + aspartate kinase%2C monofunctional class asp_kin_monofn: aspartate kinase%2C monofunctional class~[E] COG0527 Aspartokinases gene gene3087 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3114 CH60_3115 CH60_3115 shlB shlB 3374591 3376054 + hemolysin transporter protein shlB [U] COG2831 Hemolysin activation/secretion protein gene gene3088 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3115 CH60_3116 CH60_3116 shlA shlA 3376124 3381031 + hemolysin [U] COG3210 Large exoproteins involved in heme utilization or adhesion gene gene3089 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3116 CH60_3117 CH60_3117 metH metH 3381127 3384822 - methionine synthase metH: methionine synthase~[E] COG1410 Methionine synthase I%2C cobalamin-binding domain gene gene3090 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3117 CH60_3118 CH60_3118 iclR iclR 3385037 3385879 + acetate operon repressor [K] COG1414 Transcriptional regulator gene gene3091 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3118 CH60_3119 CH60_3119 CH60_3119 3385999 3387726 - isocitrate dehydrogenase kinase/phosphatase family protein [T] COG4579 Isocitrate dehydrogenase kinase/phosphatase gene gene3092 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3119 CH60_312 CH60_312 CH60_312 328106 328327 - hypothetical protein conserved hypothetical protein~[O] COG0425 Predicted redox protein%2C regulator of disulfide bond formation gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_312 CH60_3120 CH60_3120 aceA aceA 3387982 3389289 - isocitrate lyase isocit_lyase: isocitrate lyase~[C] COG2224 Isocitrate lyase gene gene3093 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3120 CH60_3121 CH60_3121 aceB aceB 3389336 3390934 - malate synthase A malate_syn_A: malate synthase A~[C] COG2225 Malate synthase gene gene3094 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3121 CH60_3122 CH60_3122 metA metA 3391355 3392284 - homoserine O-succinyltransferase metA: homoserine O-succinyltransferase~[E] COG1897 Homoserine trans-succinylase gene gene3095 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3122 CH60_3123 CH60_3123 CH60_3123 3392352 3392624 + hypothetical protein conserved hypothetical protein gene gene3096 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3123 CH60_3124 CH60_3124 CH60_3124 3392870 3394078 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene3097 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3124 CH60_3125 CH60_3125 CH60_3125 3394347 3394459 - 5S ribosomal RNA rRNA gene3098 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3125 CH60_3126 CH60_3126 CH60_3126 3394503 3394578 - tRNA-Thr tRNA gene3099 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3126 CH60_3127 CH60_3127 CH60_3127 3394594 3394706 - 5S ribosomal RNA rRNA gene3100 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3127 CH60_3129 CH60_3129 CH60_3129 3394820 3397719 - 23S ribosomal RNA rRNA gene3101 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3129 CH60_313 CH60_313 CH60_313 328372 329586 - sulfur transport family protein [R] COG2391 Predicted transporter component gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_313 CH60_3131 CH60_3131 CH60_3131 3397974 3398049 - tRNA-Glu tRNA gene3102 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3131 CH60_3132 CH60_3132 CH60_3132 3398191 3399715 - 16S ribosomal RNA rRNA gene3103 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3132 CH60_3134 CH60_3134 CH60_3134 3399852 3399971 - hypothetical protein conserved hypothetical protein gene gene3104 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3134 CH60_3135 CH60_3135 purH purH 3400382 3401971 + phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase~[F] COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) gene gene3105 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3135 CH60_3136 CH60_3136 purD purD 3402031 3403317 + phosphoribosylamine--glycine ligase [F] COG0151 Phosphoribosylamine-glycine ligase gene gene3106 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3136 CH60_3137 CH60_3137 CH60_3137 3403484 3404137 - hypothetical protein conserved hypothetical protein gene gene3107 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3137 CH60_3138 CH60_3138 hupA hupA 3404187 3404462 - DNA-binding protein HU-alpha [L] COG0776 Bacterial nucleoid DNA-binding protein gene gene3108 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3138 CH60_3139 CH60_3139 CH60_3139 3404651 3405241 - hypothetical protein conserved hypothetical protein~[S] COG3068 Uncharacterized protein conserved in bacteria gene gene3109 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3139 CH60_314 CH60_314 CH60_314 329969 331036 - type III secretion%2C YscU/HrpY family protein flhB_rel_III: type III secretion%2C YscU/HrpY family protein~[U] COG4792 Type III secretory pathway%2C component EscU gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_314 CH60_3140 CH60_3140 nfi nfi 3405287 3405991 - endonuclease V [L] COG1515 Deoxyinosine 3'endonuclease (endonuclease V) gene gene3110 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3140 CH60_3141 CH60_3141 hemE hemE 3406057 3407124 - uroporphyrinogen decarboxylase hemE: uroporphyrinogen decarboxylase~[H] COG0407 Uroporphyrinogen-III decarboxylase gene gene3111 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3141 CH60_3142 CH60_3142 CH60_3142 3407243 3408028 - hypothetical protein gene gene3112 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3142 CH60_3143 CH60_3143 CH60_3143 3408121 3408903 - NADH pyrophosphatase zinc ribbon domain protein [L] COG2816 NTP pyrophosphohydrolases containing a Zn-finger%2C probably nucleic-acid-binding gene gene3113 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3143 CH60_3144 CH60_3144 CH60_3144 3409000 3409509 + regulator of RNA polymerase sigma(70) subunit%2C Rsd/AlgQ family protein [K] COG3160 Regulator of sigma D gene gene3114 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3144 CH60_3145 CH60_3145 thiC thiC 3409885 3411930 + phosphomethylpyrimidine synthase thiC: phosphomethylpyrimidine synthase~[H] COG0422 Thiamine biosynthesis protein ThiC gene gene3115 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3145 CH60_3146 CH60_3146 thiE thiE 3411917 3412591 + thiamine-phosphate diphosphorylase thiE: thiamine-phosphate diphosphorylase~[H] COG0352 Thiamine monophosphate synthase gene gene3116 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3146 CH60_3147 CH60_3147 CH60_3147 3412581 3413378 + thiF family protein [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 gene gene3117 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3147 CH60_3148 CH60_3148 thiS thiS 3413375 3413590 + thiamine biosynthesis protein ThiS thiS: thiamine biosynthesis protein ThiS~[H] COG2104 Sulfur transfer protein involved in thiamine biosynthesis gene gene3118 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3148 CH60_3149 CH60_3149 CH60_3149 3413592 3414407 + histidine biosynthesis family protein [H] COG2022 Uncharacterized enzyme of thiazole biosynthesis gene gene3119 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3149 CH60_315 CH60_315 epaR epaR 331026 331820 - type III secretion apparatus protein SpaR/YscT/HrcT fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT~[U] COG4791 Type III secretory pathway%2C component EscT gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_315 CH60_3150 CH60_3150 thiH thiH 3414400 3415530 + thiazole biosynthesis protein ThiH thiH: thiazole biosynthesis protein ThiH~[HR] COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes gene gene3120 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3150 CH60_3151 CH60_3151 rpoC rpoC 3415834 3420054 - DNA-directed RNA polymerase%2C beta' subunit rpoC_TIGR: DNA-directed RNA polymerase%2C beta' subunit~[K] COG0086 DNA-directed RNA polymerase%2C beta' subunit/160 kD subunit gene gene3121 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3151 CH60_3152 CH60_3152 rpoB rpoB 3420183 3424211 - DNA-directed RNA polymerase%2C beta subunit rpoB: DNA-directed RNA polymerase%2C beta subunit~[K] COG0085 DNA-directed RNA polymerase%2C beta subunit/140 kD subunit gene gene3122 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3152 CH60_3153 CH60_3153 CH60_3153 3424271 3424408 + hypothetical protein conserved hypothetical protein gene gene3123 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3153 CH60_3154 CH60_3154 rplL rplL 3424554 3424922 - ribosomal protein L7/L12 L12: ribosomal protein L7/L12~[J] COG0222 Ribosomal protein L7/L12 gene gene3124 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3154 CH60_3155 CH60_3155 rplJ rplJ 3424989 3425486 - 50S ribosomal protein L10 [J] COG0244 Ribosomal protein L10 gene gene3125 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3155 CH60_3156 CH60_3156 rplA rplA 3425851 3426555 - ribosomal protein L1 rplA_bact: ribosomal protein L1~[J] COG0081 Ribosomal protein L1 gene gene3126 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3156 CH60_3157 CH60_3157 rplK rplK 3426559 3426987 - ribosomal protein L11 L11_bact: ribosomal protein L11~[J] COG0080 Ribosomal protein L11 gene gene3127 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3157 CH60_3158 CH60_3158 nusG nusG 3427178 3427723 - Transcription antiterminator nusG: transcription termination/antitermination factor NusG~[K] COG0250 Transcription antiterminator gene gene3128 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3158 CH60_3159 CH60_3159 secE secE 3427725 3428108 - preprotein translocase%2C SecE subunit secE_bact: preprotein translocase%2C SecE subunit~[U] COG0690 Preprotein translocase subunit SecE gene gene3129 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3159 CH60_316 CH60_316 CH60_316 331822 332115 - type III secretion%2C HrpO family protein fliQ_rel_III: type III secretion%2C HrpO family protein~[U] COG4794 Type III secretory pathway%2C component EscS gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_316 CH60_3160 CH60_3160 tuf tuf 3428359 3429543 - translation elongation factor Tu EF-Tu: translation elongation factor Tu~[J] COG0050 GTPases - translation elongation factors gene gene3130 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3160 CH60_3161 CH60_3161 CH60_3161 3429652 3429727 - tRNA-Thr tRNA gene3131 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3161 CH60_3162 CH60_3162 CH60_3162 3429734 3429808 - tRNA-Gly tRNA gene3132 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3162 CH60_3163 CH60_3163 CH60_3163 3429958 3430042 - tRNA-Tyr tRNA gene3133 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3163 CH60_3164 CH60_3164 CH60_3164 3430061 3430136 - tRNA-Thr tRNA gene3134 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3164 CH60_3165 CH60_3165 CH60_3165 3430600 3431379 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene3135 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3165 CH60_3166 CH60_3166 CH60_3166 3431379 3432122 - integrase core domain protein [L] COG4584 Transposase and inactivated derivatives gene gene3136 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3166 CH60_3167 CH60_3167 CH60_3167 3432161 3432400 - helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene3137 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3167 CH60_3168 CH60_3168 CH60_3168 3432723 3432968 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene3138 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3168 CH60_3169 CH60_3169 CH60_3169 3433420 3434973 - type I phosphodiesterase / nucleotide pyrophosphatase family protein [P] COG3119 Arylsulfatase A and related enzymes gene gene3139 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3169 CH60_317 CH60_317 epaP epaP 332112 332762 - type III secretion apparatus protein%2C YscR/HrcR family yscR: type III secretion apparatus protein%2C YscR/HrcR family~[U] COG4790 Type III secretory pathway%2C component EscR gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_317 CH60_3170 CH60_3170 CH60_3170 3435813 3436589 + deoR-like helix-turn-helix domain protein [KG] COG1349 Transcriptional regulators of sugar metabolism gene gene3140 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3170 CH60_3171 CH60_3171 CH60_3171 3436639 3437937 + D-tagatose-bisphosphate aldolase%2C class II%2C non-catalytic subunit agaZ_gatZ: D-tagatose-bisphosphate aldolase%2C class II%2C non-catalytic subunit~[G] COG4573 Predicted tagatose 6-phosphate kinase gene gene3141 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3171 CH60_3172 CH60_3172 CH60_3172 3437934 3439100 + sugar isomerase%2C AgaS family protein agaS_fam: sugar isomerase%2C AgaS family protein~[M] COG2222 Predicted phosphosugar isomerases gene gene3142 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3172 CH60_3173 CH60_3173 CH60_3173 3439118 3439615 + PTS system%2C mannose/fructose/sorbose%2C IIB component family protein pts-sorbose: PTS system%2C mannose/fructose/sorbose%2C IIB component family protein~[G] COG3444 Phosphotransferase system%2C mannose/fructose/N-acetylgalactosamine-specific component IIB gene gene3143 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3173 CH60_3174 CH60_3174 CH60_3174 3439662 3440450 + PTS system sorbose-specific iic component family protein [G] COG3715 Phosphotransferase system%2C mannose/fructose/N-acetylgalactosamine-specific component IIC gene gene3144 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3174 CH60_3175 CH60_3175 CH60_3175 3440440 3441330 + PTS system mannose/fructose/sorbose IID component family protein [G] COG3716 Phosphotransferase system%2C mannose/fructose/N-acetylgalactosamine-specific component IID gene gene3145 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3175 CH60_3176 CH60_3176 CH60_3176 3441416 3441856 + PTS system fructose IIA component family protein [G] COG2893 Phosphotransferase system%2C mannose/fructose-specific component IIA gene gene3146 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3176 CH60_3177 CH60_3177 nagA nagA 3441859 3443025 + N-acetylglucosamine-6-phosphate deacetylase nagA: N-acetylglucosamine-6-phosphate deacetylase~[G] COG1820 N-acetylglucosamine-6-phosphate deacetylase gene gene3147 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3177 CH60_3178 CH60_3178 kduD kduD 3443221 3443976 + 2-deoxy-D-gluconate 3-dehydrogenase kduD: 2-deoxy-D-gluconate 3-dehydrogenase~[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene3148 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3178 CH60_3179 CH60_3179 CH60_3179 3443992 3445050 + glycosyl Hydrolase Family 88 family protein [R] COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties%2C and related proteins gene gene3149 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3179 CH60_318 CH60_318 epaO epaO 332889 333851 - type III secretion apparatus protein%2C YscQ/HrcQ family spaO_YscQ: type III secretion apparatus protein%2C YscQ/HrcQ family~[NU] COG1886 Flagellar motor switch/type III secretory pathway protein gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_318 CH60_3180 CH60_3180 CH60_3180 3445481 3446707 + anaerobic sulfatase maturase sulfatase_rSAM: anaerobic sulfatase maturase~[R] COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) gene gene3150 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3180 CH60_3181 CH60_3181 CH60_3181 3446728 3448335 + type I phosphodiesterase / nucleotide pyrophosphatase family protein [P] COG3119 Arylsulfatase A and related enzymes gene gene3151 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3181 CH60_3182 CH60_3182 CH60_3182 3448458 3449945 + hypothetical protein conserved hypothetical protein~[S] COG4289 Uncharacterized protein conserved in bacteria gene gene3152 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3182 CH60_3183 CH60_3183 CH60_3183 3450055 3450909 + class II aldolase%2C tagatose bisphosphate family tag_bisphos_ald: class II aldolase%2C tagatose bisphosphate family~[G] COG0191 Fructose/tagatose bisphosphate aldolase gene gene3153 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3183 CH60_3184 CH60_3184 CH60_3184 3451481 3451762 - hypothetical protein conserved hypothetical protein gene gene3155 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3184 CH60_3185 CH60_3185 CH60_3185 3450933 3451511 + DJ-1/PfpI family protein [R] COG0693 Putative intracellular protease/amidase gene gene3154 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3185 CH60_3186 CH60_3186 CH60_3186 3451752 3452834 - bacterial regulatory s%2C lacI family protein [K] COG1609 Transcriptional regulators gene gene3156 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3186 CH60_3187 CH60_3187 CH60_3187 3453228 3454535 + major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene3157 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3187 CH60_3188 CH60_3188 CH60_3188 3454686 3457061 + glycosyl hydrolases 31 family protein [G] COG1501 Alpha-glucosidases%2C family 31 of glycosyl hydrolases gene gene3158 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3188 CH60_3189 CH60_3189 CH60_3189 3457390 3458463 - bacterial regulatory s%2C lacI family protein [K] COG1609 Transcriptional regulators gene gene3159 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3189 CH60_319 CH60_319 CH60_319 333829 334227 - hypothetical protein conserved hypothetical protein gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_319 CH60_3190 CH60_3190 CH60_3190 3458735 3459994 + lamB porin family protein [G] COG4580 Maltoporin (phage lambda and maltose receptor) gene gene3160 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3190 CH60_3191 CH60_3191 CH60_3191 3460367 3460678 - PTS system%2C glucose-like IIB component domain protein EIIB_glc: PTS system%2C glucose-like IIB component domain protein~[G] COG1264 Phosphotransferase system IIB components gene gene3161 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3191 CH60_3192 CH60_3192 CH60_3192 3460790 3462850 - beta-galactosidase family protein [G] COG1874 Beta-galactosidase gene gene3162 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3192 CH60_3193 CH60_3193 CH60_3193 3462901 3464103 - glycosyl hydrolase 53 family protein [G] COG3867 Arabinogalactan endo-1%2C4-beta-galactosidase gene gene3163 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3193 CH60_3194 CH60_3194 CH60_3194 3464108 3464959 - binding--dependent transport system inner membrane component family protein [G] COG3833 ABC-type maltose transport systems%2C permease component gene gene3164 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3194 CH60_3195 CH60_3195 CH60_3195 3464971 3466278 - binding--dependent transport system inner membrane component family protein [G] COG1175 ABC-type sugar transport systems%2C permease components gene gene3165 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3195 CH60_3196 CH60_3196 CH60_3196 3466438 3467673 - bacterial extracellular solute-binding family protein [G] COG2182 Maltose-binding periplasmic proteins/domains gene gene3166 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3196 CH60_3197 CH60_3197 CH60_3197 3468036 3469142 + ABC transporter family protein [G] COG3839 ABC-type sugar transport systems%2C ATPase components gene gene3167 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3197 CH60_3198 CH60_3198 CH60_3198 3469701 3471209 + ABC transporter family protein [G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene3168 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3198 CH60_3199 CH60_3199 CH60_3199 3471281 3472285 + branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene3169 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3199 CH60_32 CH60_32 dmpI dmpI 41021 41221 + 4-oxalocrotonate tautomerase enzyme family protein taut: 4-oxalocrotonate tautomerase enzyme family protein~[R] COG1942 Uncharacterized protein%2C 4-oxalocrotonate tautomerase homolog gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_32 CH60_320 CH60_320 CH60_320 334208 334609 - putative type III secretion system apparatus protein gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_320 CH60_3200 CH60_3200 CH60_3200 3472704 3473705 + periplasmic binding domain protein [G] COG1879 ABC-type sugar transport system%2C periplasmic component gene gene3170 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3200 CH60_3201 CH60_3201 CH60_3201 3474484 3475002 + putative exported protein gene gene3171 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3201 CH60_3202 CH60_3202 CH60_3202 3475378 3476235 + hypothetical protein conserved hypothetical protein gene gene3172 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3202 CH60_3203 CH60_3203 CH60_3203 3476659 3477339 + transcriptional regulator PadR-like family protein [K] COG1695 Predicted transcriptional regulators gene gene3173 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3203 CH60_3204 CH60_3204 CH60_3204 3477339 3477659 + hypothetical protein conserved hypothetical protein gene gene3174 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3204 CH60_3205 CH60_3205 CH60_3205 3477742 3478008 - PAAR motif family protein [S] COG4104 Uncharacterized conserved protein gene gene3175 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3205 CH60_3206 CH60_3206 CH60_3206 3478264 3479043 - putative membrane protein gene gene3176 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3206 CH60_3207 CH60_3207 CH60_3207 3479855 3480415 - hypothetical protein conserved hypothetical protein gene gene3177 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3207 CH60_3208 CH60_3208 CH60_3208 3480385 3482544 - hypothetical protein conserved hypothetical protein gene gene3178 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3208 CH60_3209 CH60_3209 CH60_3209 3482954 3483238 - bacterial self-protective colicin-like immunity family protein gene gene3179 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3209 CH60_321 CH60_321 CH60_321 334606 335943 - ATPase%2C FliI/YscN family protein fliI_yscN: ATPase%2C FliI/YscN family protein~[NU] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_321 CH60_3210 CH60_3210 CH60_3210 3483285 3483488 - hypothetical protein conserved hypothetical protein gene gene3180 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3210 CH60_3211 CH60_3211 CH60_3211 3483861 3484055 - cysteine-rich CPCC family protein gene gene3181 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3211 CH60_3212 CH60_3212 CH60_3212 3484052 3485590 - hypothetical protein conserved hypothetical protein~[R] COG5529 Pyocin large subunit gene gene3182 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3212 CH60_3213 CH60_3213 CH60_3213 3486094 3487236 - fic/DOC family protein [S] COG3177 Uncharacterized conserved protein gene gene3183 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3213 CH60_3214 CH60_3214 CH60_3214 3487505 3487870 + hypothetical protein conserved hypothetical protein gene gene3184 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3214 CH60_3215 CH60_3215 CH60_3215 3487883 3488119 + hypothetical protein conserved hypothetical protein gene gene3185 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3215 CH60_3216 CH60_3216 CH60_3216 3488125 3488457 + hypothetical protein conserved hypothetical protein gene gene3186 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3216 CH60_3217 CH60_3217 CH60_3217 3488639 3488839 + prophage CP4-57 regulatory family protein [K] COG3311 Predicted transcriptional regulator gene gene3187 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3217 CH60_3218 CH60_3218 CH60_3218 3488998 3489324 - hypothetical protein conserved hypothetical protein gene gene3188 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3218 CH60_3219 CH60_3219 CH60_3219 3489624 3491915 + zinc-binding domain of primase-helicase family protein [S] COG4643 Uncharacterized protein conserved in bacteria gene gene3189 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3219 CH60_322 CH60_322 CH60_322 335930 337978 - type III secretion%2C HrcV family protein hrcV: type III secretion%2C HrcV family protein~[U] COG4789 Type III secretory pathway%2C component EscV gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_322 CH60_3220 CH60_3220 mqsA mqsA 3492315 3492710 - antitoxin MqsA [K] COG1396 Predicted transcriptional regulators gene gene3190 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3220 CH60_3221 CH60_3221 mqsR mqsR 3492713 3493009 - mRNA interferase MqsR gene gene3191 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3221 CH60_3222 CH60_3222 CH60_3222 3493173 3493535 - helix-turn-helix family protein [K] COG1396 Predicted transcriptional regulators gene gene3192 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3222 CH60_3223 CH60_3223 CH60_3223 3493598 3493858 - plasmid stabilization system family protein [JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system gene gene3193 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3223 CH60_3224 CH60_3224 CH60_3224 3494456 3494650 + hypothetical protein conserved hypothetical protein gene gene3194 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3224 CH60_3225 CH60_3225 CH60_3225 3494706 3495920 - hypothetical protein phage integrase%2C N-terminal SAM-like domain protein~[L] COG0582 Integrase gene gene3195 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3225 CH60_3226 CH60_3226 CH60_3226 3496086 3496159 - tRNA-Gly tRNA gene3196 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3226 CH60_3227 CH60_3227 lysS lysS 3496353 3497870 - lysine--tRNA ligase lysS_bact: lysine--tRNA ligase~[J] COG1190 Lysyl-tRNA synthetase (class II) gene gene3197 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3227 CH60_3228 CH60_3228 prfB prfB 3497880 3498812 - peptide chain release factor 2 prfB: peptide chain release factor 2~[J] COG1186 Protein chain release factor B gene gene3198 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3228 CH60_3229 CH60_3229 recJ recJ 3499157 3500890 - single-stranded-DNA-specific exonuclease RecJ recJ: single-stranded-DNA-specific exonuclease RecJ~[L] COG0608 Single-stranded DNA-specific exonuclease gene gene3199 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3229 CH60_323 CH60_323 CH60_323 337971 338618 - type III secretion apparatus protein%2C HrpE/YscL family hrpE_YscL_not: type III secretion apparatus protein%2C HrpE/YscL family gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_323 CH60_3230 CH60_3230 CH60_3230 3500897 3501613 - DSBA-like thioredoxin domain protein [O] COG1651 Protein-disulfide isomerase gene gene3200 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3230 CH60_3231 CH60_3231 xerD xerD 3501644 3502543 - tyrosine recombinase XerD recomb_XerD: tyrosine recombinase XerD~[L] COG4974 Site-specific recombinase XerD gene gene3201 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3231 CH60_3232 CH60_3232 CH60_3232 3502650 3503168 + flavodoxin flav_long: flavodoxin~[C] COG0716 Flavodoxins gene gene3202 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3232 CH60_3233 CH60_3233 CH60_3233 3503258 3504715 - inner membrane CreD family protein [V] COG4452 Inner membrane protein involved in colicin E2 resistance gene gene3203 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3233 CH60_3234 CH60_3234 CH60_3234 3504836 3506260 - his Kinase A domain protein [T] COG0642 Signal transduction histidine kinase gene gene3204 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3234 CH60_3235 CH60_3235 CH60_3235 3506285 3506983 - hypothetical protein transcriptional regulatory%2C C terminal family protein~[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene3205 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3235 CH60_3236 CH60_3236 CH60_3236 3507389 3507655 - flavinator of succinate dehydrogenase family protein [S] COG2938 Uncharacterized conserved protein gene gene3206 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3236 CH60_3237 CH60_3237 CH60_3237 3507972 3508964 + aminomethyltransferase folate-binding domain protein [R] COG0354 Predicted aminomethyltransferase related to GcvT gene gene3207 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3237 CH60_3238 CH60_3238 CH60_3238 3509037 3509534 - hypothetical protein conserved hypothetical protein~[S] COG5472 Predicted small integral membrane protein gene gene3208 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3238 CH60_3239 CH60_3239 CH60_3239 3509792 3510493 - channel%2C hemolysin III family protein hlyIII: channel%2C hemolysin III family protein~[R] COG1272 Predicted membrane protein%2C hemolysin III homolog gene gene3209 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3239 CH60_324 CH60_324 CH60_324 338615 339208 - type III secretion system subunit gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_324 CH60_3240 CH60_3240 CH60_3240 3510695 3511798 - putative exported protein gene gene3210 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3240 CH60_3241 CH60_3241 CH60_3241 3511902 3513878 - coiled stalk of trimeric autotransporter adhesin family protein [UW] COG5295 Autotransporter adhesin gene gene3211 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3241 CH60_3242 CH60_3242 CH60_3242 3513875 3514027 - hemagglutinin repeat domain protein gene gene3212 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3242 CH60_3243 CH60_3243 CH60_3243 3515088 3515525 - lipocalin-like domain protein gene gene3213 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3243 CH60_3244 CH60_3244 gcvP gcvP 3515903 3518782 - glycine dehydrogenase gcvP: glycine dehydrogenase~[E] COG1003 Glycine cleavage system protein P (pyridoxal-binding)%2C C-terminal domain gene gene3214 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3244 CH60_3245 CH60_3245 gcvH gcvH 3518994 3519380 - glycine cleavage system H protein gcvH: glycine cleavage system H protein~[E] COG0509 Glycine cleavage system H protein (lipoate-binding) gene gene3215 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3245 CH60_3246 CH60_3246 gcvT gcvT 3519449 3520546 - glycine cleavage system T protein gcvT: glycine cleavage system T protein~[E] COG0404 Glycine cleavage system T protein (aminomethyltransferase) gene gene3216 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3246 CH60_3247 CH60_3247 CH60_3247 3521267 3522487 - ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 family protein ubi-OHases: ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 family protein~[HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases gene gene3217 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3247 CH60_3248 CH60_3248 ubiH ubiH 3522660 3523838 - 2-polyprenyl-6-methoxyphenol 4-hydroxylase ubiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase~[HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases gene gene3218 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3248 CH60_3249 CH60_3249 CH60_3249 3523924 3525237 - hypothetical protein aminopeptidase P%2C N-terminal domain protein~[E] COG0006 Xaa-Pro aminopeptidase gene gene3219 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3249 CH60_325 CH60_325 CH60_325 339383 340114 - type III secretion apparatus lipoprotein%2C YscJ/HrcJ family III_secr_YscJ: type III secretion apparatus lipoprotein%2C YscJ/HrcJ family~[U] COG4669 Type III secretory pathway%2C lipoprotein EscJ gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_325 CH60_3250 CH60_3250 CH60_3250 3525325 3525903 - yecA family protein ygfB_yecA: yecA family protein~[S] COG3079 Uncharacterized protein conserved in bacteria gene gene3220 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3250 CH60_3251 CH60_3251 zapA zapA 3526240 3526569 + cell division protein ZapA [S] COG3027 Uncharacterized protein conserved in bacteria gene gene3221 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3251 CH60_3252 CH60_3252 CH60_3252 3526933 3527529 + 5-formyltetrahydrofolate cyclo-ligase MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase~[H] COG0212 5-formyltetrahydrofolate cyclo-ligase gene gene3222 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3252 CH60_3253 CH60_3253 CH60_3253 3527794 3529035 - ACT domain protein [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases gene gene3223 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3253 CH60_3254 CH60_3254 rpiA rpiA 3529342 3529998 - ribose 5-phosphate isomerase A rpiA: ribose 5-phosphate isomerase A~[G] COG0120 Ribose 5-phosphate isomerase gene gene3224 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3254 CH60_3255 CH60_3255 iciA iciA 3530340 3531248 + chromosome initiation inhibitor [K] COG0583 Transcriptional regulator gene gene3225 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3255 CH60_3256 CH60_3256 CH60_3256 3531259 3532038 - hypothetical protein conserved hypothetical protein~[S] COG2968 Uncharacterized conserved protein gene gene3226 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3256 CH60_3257 CH60_3257 lysE lysE 3532228 3532845 - L-lysine exporter family protein 2a75: L-lysine exporter family protein~[R] COG1279 Lysine efflux permease gene gene3227 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3257 CH60_3258 CH60_3258 CH60_3258 3533108 3533977 - mechanosensitive ion channel family protein [M] COG0668 Small-conductance mechanosensitive channel gene gene3228 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3258 CH60_3259 CH60_3259 fbaA fbaA 3534415 3535494 - fructose-bisphosphate aldolase%2C class II fruBisAldo_II_A: fructose-bisphosphate aldolase%2C class II~[G] COG0191 Fructose/tagatose bisphosphate aldolase gene gene3229 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3259 CH60_326 CH60_326 CH60_326 340111 340362 - hypothetical protein yscI_hrpB_dom: type III secretion apparatus protein%2C YscI/HrpB%2C C-terminal domain gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_326 CH60_3260 CH60_3260 CH60_3260 3535614 3536777 - phosphoglycerate kinase family protein [G] COG0126 3-phosphoglycerate kinase gene gene3230 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3260 CH60_3261 CH60_3261 epd epd 3536880 3537896 - erythrose-4-phosphate dehydrogenase E4PD_g-proteo: erythrose-4-phosphate dehydrogenase~[G] COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase gene gene3231 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3261 CH60_3262 CH60_3262 CH60_3262 3538237 3538482 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene3232 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3262 CH60_3263 CH60_3263 tkt tkt 3539002 3540996 - transketolase tktlase_bact: transketolase~[G] COG0021 Transketolase gene gene3233 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3263 CH60_3264 CH60_3264 CH60_3264 3541487 3542239 + peptidase M48 family protein [O] COG0501 Zn-dependent protease with chaperone function gene gene3234 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3264 CH60_3265 CH60_3265 CH60_3265 3542529 3542849 - rieske [2Fe-2S] domain protein [PR] COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases gene gene3235 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3265 CH60_3266 CH60_3266 speA speA 3543009 3544988 - arginine decarboxylase speA: arginine decarboxylase~[E] COG1166 Arginine decarboxylase (spermidine biosynthesis) gene gene3236 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3266 CH60_3267 CH60_3267 CH60_3267 3545234 3545395 - hypothetical protein conserved hypothetical protein gene gene3237 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3267 CH60_3268 CH60_3268 metK metK 3546195 3547349 + methionine adenosyltransferase metK: methionine adenosyltransferase~[H] COG0192 S-adenosylmethionine synthetase gene gene3238 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3268 CH60_3269 CH60_3269 CH60_3269 3547542 3548054 + peptidase MA superfamily protein [S] COG3091 Uncharacterized protein conserved in bacteria gene gene3239 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3269 CH60_327 CH60_327 CH60_327 340460 340708 - hypothetical protein conserved hypothetical protein gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_327 CH60_3270 CH60_3270 CH60_3270 3548152 3548859 + endonuclease I family protein [L] COG2356 Endonuclease I gene gene3240 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3270 CH60_3271 CH60_3271 rsmE rsmE 3549111 3549842 + ribosomal RNA small subunit methyltransferase E [S] COG1385 Uncharacterized protein conserved in bacteria gene gene3241 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3271 CH60_3272 CH60_3272 gshB gshB 3549868 3550827 + glutathione synthase glut_syn: glutathione synthase~[HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) gene gene3242 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3272 CH60_3273 CH60_3273 CH60_3273 3550943 3551506 + hypothetical protein conserved hypothetical protein~[K] COG1678 Putative transcriptional regulator gene gene3243 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3273 CH60_3274 CH60_3274 CH60_3274 3551506 3551928 + hypothetical protein conserved hypothetical protein~[L] COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) gene gene3244 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3274 CH60_3275 CH60_3275 aguB aguB 3552108 3552992 + N-carbamoylputrescine amidase agmatine_aguB: N-carbamoylputrescine amidase~[R] COG0388 Predicted amidohydrolase gene gene3245 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3275 CH60_3276 CH60_3276 aguA aguA 3552996 3554111 + agmatine deiminase agmatine_aguA: agmatine deiminase~[E] COG2957 Peptidylarginine deiminase and related enzymes gene gene3246 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3276 CH60_3277 CH60_3277 CH60_3277 3554220 3555344 - twitching motility family protein pilT_fam: twitching motility family protein~[NU] COG2805 Tfp pilus assembly protein%2C pilus retraction ATPase PilT gene gene3247 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3277 CH60_3278 CH60_3278 CH60_3278 3555364 3556062 + hypothetical protein alanine racemase%2C N-terminal domain protein~[R] COG0325 Predicted enzyme with a TIM-barrel fold gene gene3248 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3278 CH60_3279 CH60_3279 proC proC 3556195 3557016 + pyrroline-5-carboxylate reductase proC: pyrroline-5-carboxylate reductase~[E] COG0345 Pyrroline-5-carboxylate reductase gene gene3249 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3279 CH60_328 CH60_328 eprI eprI 340705 340920 - type III secretion apparatus needle protein III_needle: type III secretion apparatus needle protein gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_328 CH60_3280 CH60_3280 CH60_3280 3557304 3557858 + YGGT family protein [S] COG0762 Predicted integral membrane protein gene gene3250 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3280 CH60_3281 CH60_3281 CH60_3281 3557855 3558145 + hypothetical protein conserved hypothetical protein~[S] COG1872 Uncharacterized conserved protein gene gene3251 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3281 CH60_3282 CH60_3282 rdgB rdgB 3558245 3558838 + non-canonical purine NTP pyrophosphatase%2C RdgB/HAM1 family [F] COG0127 Xanthosine triphosphate pyrophosphatase gene gene3252 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3282 CH60_3283 CH60_3283 CH60_3283 3558831 3559961 + radical SAM superfamily protein [H] COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases gene gene3253 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3283 CH60_3284 CH60_3284 CH60_3284 3560151 3560258 - putative virulence determinant [Q] COG2931 RTX toxins and related Ca2+-binding proteins gene gene3254 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3284 CH60_3285 CH60_3285 CH60_3285 3560299 3561057 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene3255 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3285 CH60_3286 CH60_3286 CH60_3286 3560997 3561506 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene3256 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3286 CH60_3287 CH60_3287 CH60_3287 3561554 3570805 - peptidase C80 family protein [Q] COG2931 RTX toxins and related Ca2+-binding proteins gene gene3257 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3287 CH60_3288 CH60_3288 CH60_3288 3571301 3571531 - hypothetical protein conserved hypothetical protein gene gene3258 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3288 CH60_3289 CH60_3289 CH60_3289 3571504 3572034 - hypothetical protein conserved hypothetical protein gene gene3259 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3289 CH60_329 CH60_329 CH60_329 340930 341637 - helix-turn-helix domain protein [K] COG2207 AraC-type DNA-binding domain-containing proteins gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_329 CH60_3290 CH60_3290 glsA glsA 3572146 3573072 - glutaminase A gln_ase: glutaminase A~[E] COG2066 Glutaminase gene gene3260 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3290 CH60_3291 CH60_3291 CH60_3291 3573183 3573509 - hypothetical protein conserved hypothetical protein~[S] COG3171 Uncharacterized protein conserved in bacteria gene gene3261 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3291 CH60_3292 CH60_3292 trmB trmB 3573509 3574228 - tRNA (guanine-N(7)-)-methyltransferase [R] COG0220 Predicted S-adenosylmethionine-dependent methyltransferase gene gene3262 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3292 CH60_3293 CH60_3293 mutY mutY 3574563 3575681 + A/G-specific adenine glycosylase mutY: A/G-specific adenine glycosylase~[L] COG1194 A/G-specific DNA glycosylase gene gene3263 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3293 CH60_3294 CH60_3294 CH60_3294 3575859 3576131 + putative Fe(2+)-trafficking protein [CO] COG2924 Fe-S cluster protector protein gene gene3264 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3294 CH60_3295 CH60_3295 CH60_3295 3576314 3577390 + hypothetical protein conserved hypothetical protein~[M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) gene gene3265 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3295 CH60_3296 CH60_3296 CH60_3296 3577690 3578790 + periplasmic binding family protein [P] COG0614 ABC-type Fe3+-hydroxamate transport system%2C periplasmic component gene gene3266 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3296 CH60_3297 CH60_3297 CH60_3297 3578783 3580927 + TonB-dependent siderophore receptor family protein tonB-siderophor: TonB-dependent siderophore receptor family protein~[P] COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3267 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3297 CH60_3298 CH60_3298 CH60_3298 3581010 3581993 - branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene3268 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3298 CH60_3299 CH60_3299 CH60_3299 3582026 3583525 - ABC transporter family protein [G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene3269 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3299 CH60_33 CH60_33 CH60_33 41500 42444 + pfkB carbohydrate kinase family protein [G] COG0524 Sugar kinases%2C ribokinase family gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_33 CH60_330 CH60_330 CH60_330 341744 341965 - putative type III secretion apparatus gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_330 CH60_3300 CH60_3300 CH60_3300 3583571 3584530 - periplasmic binding domain protein [G] COG1879 ABC-type sugar transport system%2C periplasmic component gene gene3270 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3300 CH60_3301 CH60_3301 CH60_3301 3585086 3587248 - beta-eliminating lyase family protein [E] COG1982 Arginine/lysine/ornithine decarboxylases gene gene3271 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3301 CH60_3302 CH60_3302 CH60_3302 3587917 3587992 + tRNA-Phe tRNA gene3272 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3302 CH60_3303 CH60_3303 CH60_3303 3588245 3588553 - phage integrase family protein [L] COG0582 Integrase gene gene3273 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3303 CH60_3304 CH60_3304 CH60_3304 3588577 3589008 - hypothetical protein conserved hypothetical protein~[S] COG4253 Uncharacterized protein conserved in bacteria gene gene3274 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3304 CH60_3305 CH60_3305 CH60_3305 3589029 3589205 - hypothetical protein conserved hypothetical protein~[S] COG4253 Uncharacterized protein conserved in bacteria gene gene3275 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3305 CH60_3306 CH60_3306 CH60_3306 3589813 3590181 - putative transposase [L] COG1662 Transposase and inactivated derivatives%2C IS1 family gene gene3276 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3306 CH60_3307 CH60_3307 CH60_3307 3590235 3590510 - hypothetical protein insA N-terminal domain protein~[L] COG3677 Transposase and inactivated derivatives gene gene3277 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3307 CH60_3308 CH60_3308 CH60_3308 3590606 3591372 - hypothetical protein pseudogene gene3278 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3308 CH60_331 CH60_331 CH60_331 341984 343198 - type III secretion apparatus protein%2C YscD/HrpQ family type_III_yscD: type III secretion apparatus protein%2C YscD/HrpQ family gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_331 CH60_3310 CH60_3310 CH60_3310 3591359 3593656 - peptidase M23 family protein gene gene3279 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3310 CH60_3311 CH60_3311 CH60_3311 3593672 3594307 - hypothetical protein conserved hypothetical protein~[S] COG4253 Uncharacterized protein conserved in bacteria gene gene3280 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3311 CH60_3312 CH60_3312 CH60_3312 3595228 3595503 - hypothetical protein insA N-terminal domain protein~[L] COG3677 Transposase and inactivated derivatives gene gene3281 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3312 CH60_3313 CH60_3313 CH60_3313 3595980 3596468 - hypothetical protein conserved hypothetical protein gene gene3282 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3313 CH60_3314 CH60_3314 CH60_3314 3596481 3598703 - putative hydroxyethylthiazole kinase gene gene3283 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3314 CH60_3315 CH60_3315 CH60_3315 3598718 3601066 - Rhs element Vgr family protein vgr_GE: Rhs element Vgr family protein~[S] COG3501 Uncharacterized protein conserved in bacteria gene gene3284 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3315 CH60_3316 CH60_3316 clpV clpV 3601063 3603711 - type VI secretion ATPase%2C ClpV1 family VI_ClpV1: type VI secretion ATPase%2C ClpV1 family~[O] COG0542 ATPases with chaperone activity%2C ATP-binding subunit gene gene3285 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3316 CH60_3317 CH60_3317 CH60_3317 3604129 3604620 - type VI secretion system effector%2C Hcp1 family protein VI_effect_Hcp1: type VI secretion system effector%2C Hcp1 family protein~[S] COG3157 Hemolysin-coregulated protein (uncharacterized) gene gene3286 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3317 CH60_3318 CH60_3318 CH60_3318 3604624 3606360 - ompA family protein [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins gene gene3287 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3318 CH60_3319 CH60_3319 CH60_3319 3606360 3607046 - type IV/VI secretion system%2C DotU family domain protein IV_VI_DotU: type IV/VI secretion system%2C DotU family domain protein~[S] COG3455 Uncharacterized protein conserved in bacteria gene gene3288 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3319 CH60_332 CH60_332 CH60_332 343200 344699 - type III secretion outer membrane pore%2C YscC/HrcC family type_III_yscC: type III secretion outer membrane pore%2C YscC/HrcC family~[NU] COG1450 Type II secretory pathway%2C component PulD gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_332 CH60_3320 CH60_3320 CH60_3320 3607043 3608395 - hypothetical protein conserved hypothetical protein~[S] COG3522 Uncharacterized protein conserved in bacteria gene gene3289 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3320 CH60_3321 CH60_3321 CH60_3321 3608407 3609945 - hypothetical protein conserved hypothetical protein~[S] COG3517 Uncharacterized protein conserved in bacteria gene gene3290 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3321 CH60_3322 CH60_3322 CH60_3322 3609994 3610494 - hypothetical protein conserved hypothetical protein~[S] COG3516 Uncharacterized protein conserved in bacteria gene gene3291 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3322 CH60_3323 CH60_3323 CH60_3323 3611696 3611851 - hypothetical protein conserved hypothetical protein gene gene3292 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3323 CH60_3324 CH60_3324 CH60_3324 3611894 3612265 - putative membrane protein gene gene3293 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3324 CH60_3325 CH60_3325 CH60_3325 3612439 3612702 - hypothetical protein insA N-terminal domain protein~[L] COG3677 Transposase and inactivated derivatives gene gene3294 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3325 CH60_3326 CH60_3326 CH60_3326 3612770 3613096 - putative lipoprotein gene gene3295 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3326 CH60_3327 CH60_3327 CH60_3327 3613616 3614266 - CAAX protease self-immunity family protein [R] COG1266 Predicted metal-dependent membrane protease gene gene3296 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3327 CH60_3328 CH60_3328 CH60_3328 3614971 3615117 - hypothetical protein conserved hypothetical protein gene gene3297 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3328 CH60_3329 CH60_3329 CH60_3329 3616067 3616810 - bacterial regulatory s%2C luxR family protein [K] COG2771 DNA-binding HTH domain-containing proteins gene gene3299 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3329 CH60_333 CH60_333 CH60_333 344943 347762 + hpt domain protein [T] COG0642 Signal transduction histidine kinase gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_333 CH60_3330 CH60_3330 esaI esaI 3615436 3616086 + acyl-homoserine-lactone synthase [TQ] COG3916 N-acyl-L-homoserine lactone synthetase gene gene3298 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3330 CH60_3331 CH60_3331 CH60_3331 3617378 3618754 + prolyl oligopeptidase family protein [R] COG4099 Predicted peptidase gene gene3300 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3331 CH60_3332 CH60_3332 CH60_3332 3619131 3619964 + dioxygenase family protein [Q] COG3485 Protocatechuate 3%2C4-dioxygenase beta subunit gene gene3301 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3332 CH60_3333 CH60_3333 CH60_3333 3620254 3621477 - major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene3302 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3333 CH60_3334 CH60_3334 CH60_3334 3621617 3622225 + iucA / IucC family protein [Q] COG4264 Siderophore synthetase component gene gene3303 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3334 CH60_3335 CH60_3335 CH60_3335 3622318 3623388 + iucA / IucC family protein [Q] COG4264 Siderophore synthetase component gene gene3304 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3335 CH60_3336 CH60_3336 CH60_3336 3623372 3624322 + acetyltransferase domain protein [J] COG1670 Acetyltransferases%2C including N-acetylases of ribosomal proteins gene gene3305 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3336 CH60_3337 CH60_3337 CH60_3337 3624319 3626067 + iucA / IucC family protein [Q] COG4264 Siderophore synthetase component gene gene3306 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3337 CH60_3338 CH60_3338 CH60_3338 3626064 3627392 + flavin-binding monooxygenase-like family protein [Q] COG3486 Lysine/ornithine N-monooxygenase gene gene3307 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3338 CH60_3339 CH60_3339 CH60_3339 3627464 3629644 + TonB-dependent siderophore receptor family protein tonB-siderophor: TonB-dependent siderophore receptor family protein~[P] COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3308 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3339 CH60_334 CH60_334 CH60_334 347775 348407 + bacterial regulatory s%2C luxR family protein [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_334 CH60_3340 CH60_3340 gph gph 3629903 3631327 - sugar (Glycoside-Pentoside-Hexuronide) transporter gph: sugar (Glycoside-Pentoside-Hexuronide) transporter domain protein~[G] COG2211 Na+/melibiose symporter and related transporters gene gene3309 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3340 CH60_3341 CH60_3341 CH60_3341 3631489 3632562 - glycosyl hydrolase 10 family protein gene gene3310 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3341 CH60_3342 CH60_3342 CH60_3342 3632856 3633875 + bacterial regulatory s%2C lacI family protein [K] COG1609 Transcriptional regulators gene gene3311 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3342 CH60_3343 CH60_3343 CH60_3343 3634174 3635553 + transporter%2C divalent anion:Na+ symporter family protein dass: transporter%2C divalent anion:Na+ symporter family protein~[P] COG0471 Di- and tricarboxylate transporters gene gene3312 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3343 CH60_3344 CH60_3344 CH60_3344 3635733 3636146 - putative stress response protein gene gene3313 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3344 CH60_3345 CH60_3345 CH60_3345 3636690 3636932 - hypothetical protein conserved hypothetical protein gene gene3314 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3345 CH60_3346 CH60_3346 CH60_3346 3637215 3641531 - RHS repeat-associated core domain protein rhs_assc_core: RHS repeat-associated core domain protein~[M] COG3209 Rhs family protein gene gene3315 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3346 CH60_3347 CH60_3347 CH60_3347 3641545 3642864 - tetratricopeptide repeat family protein gene gene3316 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3347 CH60_3348 CH60_3348 CH60_3348 3642890 3645115 - Rhs element Vgr family protein vgr_GE: Rhs element Vgr family protein~[S] COG3501 Uncharacterized protein conserved in bacteria gene gene3317 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3348 CH60_3349 CH60_3349 CH60_3349 3645701 3649471 - outer membrane autotransporter barrel domain protein autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA gene gene3318 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3349 CH60_335 CH60_335 CH60_335 348585 349853 - dicarboxylate symporter family protein sodium:dicarboxylate symporter family protein~[C] COG1301 Na+/H+-dicarboxylate symporters gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_335 CH60_3350 CH60_3350 CH60_3350 3650127 3652115 - outer membrane autotransporter barrel domain protein autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA gene gene3319 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3350 CH60_3351 CH60_3351 CH60_3351 3652232 3653890 - hypothetical protein conserved hypothetical protein gene gene3320 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3351 CH60_3352 CH60_3352 CH60_3352 3654891 3656234 - transporter%2C gluconate:H+ symporter family protein gntP: transporter%2C gluconate:H+ symporter family protein~[GE] COG2610 H+/gluconate symporter and related permeases gene gene3321 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3352 CH60_3353 CH60_3353 CH60_3353 3657406 3657537 - hypothetical protein conserved hypothetical protein gene gene3322 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3353 CH60_3354 CH60_3354 CH60_3354 3657774 3658172 + hypothetical protein conserved hypothetical protein gene gene3323 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3354 CH60_3355 CH60_3355 CH60_3355 3658608 3659483 + putative ornithine carbamoyltransferase gene gene3324 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3355 CH60_3356 CH60_3356 CH60_3356 3659806 3661563 - ABC transporter family protein [V] COG1132 ABC-type multidrug transport system%2C ATPase and permease components gene gene3325 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3356 CH60_3357 CH60_3357 CH60_3357 3661556 3663328 - ABC transporter family protein [V] COG1132 ABC-type multidrug transport system%2C ATPase and permease components gene gene3326 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3357 CH60_3358 CH60_3358 CH60_3358 3663328 3664632 - major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene3327 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3358 CH60_3359 CH60_3359 CH60_3359 3664622 3665386 - phospholipase/Carboxylesterase family protein [Q] COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis gene gene3328 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3359 CH60_336 CH60_336 acs acs 350757 352715 + acetate--CoA ligase ac_CoA_lig_AcsA: acetate--CoA ligase~[I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_336 CH60_3360 CH60_3360 CH60_3360 3665379 3666506 - thiazolinyl imide reductase family protein thiaz-red: thiazolinyl imide reductase family protein~[Q] COG4693 Oxidoreductase (NAD-binding)%2C involved in siderophore biosynthesis gene gene3329 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3360 CH60_3361 CH60_3361 CH60_3361 3666503 3667573 - NAD dependent epimerase/dehydratase family protein gene gene3330 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3361 CH60_3362 CH60_3362 CH60_3362 3667570 3673416 - amino acid adenylation domain protein AA-adenyl-dom: amino acid adenylation domain protein~[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins gene gene3331 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3362 CH60_3363 CH60_3363 CH60_3363 3673429 3675081 - amino acid adenylation domain protein AA-adenyl-dom: amino acid adenylation domain protein~[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins gene gene3332 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3363 CH60_3364 CH60_3364 CH60_3364 3675125 3685060 - amino acid adenylation domain protein AA-adenyl-dom: amino acid adenylation domain protein~[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins gene gene3333 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3364 CH60_3365 CH60_3365 CH60_3365 3685211 3687283 - tonB dependent receptor family protein [P] COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3334 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3365 CH60_3366 CH60_3366 CH60_3366 3687671 3688384 - peptidase M20/M25/M40 family protein [E] COG2195 Di- and tripeptidases gene gene3335 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3366 CH60_3367 CH60_3367 CH60_3367 3688443 3689393 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene3336 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3367 CH60_3368 CH60_3368 CH60_3368 3689460 3689672 + putative transposition helper domain protein [L] COG1484 DNA replication protein gene gene3337 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3368 CH60_3369 CH60_3369 CH60_3369 3689651 3690238 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene3338 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3369 CH60_337 CH60_337 CH60_337 352772 353083 + hypothetical protein conserved hypothetical protein~[S] COG3162 Predicted membrane protein gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_337 CH60_3370 CH60_3370 CH60_3370 3690282 3690857 - M42 glutamyl aminopeptidase family protein [E] COG2195 Di- and tripeptidases gene gene3339 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3370 CH60_3371 CH60_3371 CH60_3371 3691248 3692804 - abgT transporter family protein [H] COG2978 Putative p-aminobenzoyl-glutamate transporter gene gene3340 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3371 CH60_3372 CH60_3372 CH60_3372 3693523 3695340 + hypothetical protein C-terminal novel E3 ligase%2C LRR-interacting family protein~[S] COG4886 Leucine-rich repeat (LRR) protein gene gene3341 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3372 CH60_3373 CH60_3373 CH60_3373 3695549 3696424 + leucine rich repeat family protein [S] COG4886 Leucine-rich repeat (LRR) protein gene gene3342 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3373 CH60_3374 CH60_3374 CH60_3374 3696987 3698867 + leucine rich repeat family protein [S] COG4886 Leucine-rich repeat (LRR) protein gene gene3343 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3374 CH60_3375 CH60_3375 CH60_3375 3698970 3710087 - outer membrane autotransporter barrel domain protein autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA gene gene3344 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3375 CH60_3376 CH60_3376 CH60_3376 3710941 3711528 - hypothetical protein conserved hypothetical protein gene gene3345 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3376 CH60_3377 CH60_3377 CH60_3377 3711806 3713296 + hypothetical protein shET2 enterotoxin%2C N-terminal region family protein~[R] COG0666 FOG: Ankyrin repeat gene gene3346 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3377 CH60_3378 CH60_3378 CH60_3378 3713431 3716550 - RND transporter%2C hydrophobe/amphiphile efflux-1 family protein 2A0602: RND transporter%2C hydrophobe/amphiphile efflux-1 family protein~[V] COG0841 Cation/multidrug efflux pump gene gene3347 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3378 CH60_3379 CH60_3379 CH60_3379 3716563 3717840 - efflux transporter%2C RND family%2C MFP subunit RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein gene gene3348 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3379 CH60_338 CH60_338 actP actP 353080 354735 + cation/acetate symporter ActP symport_actP: cation/acetate symporter ActP~[R] COG4147 Predicted symporter gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_338 CH60_3380 CH60_3380 CH60_3380 3718279 3720846 + diguanylate cyclase domain protein GGDEF: diguanylate cyclase domain protein~[T] COG2200 FOG: EAL domain gene gene3349 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3380 CH60_3381 CH60_3381 CH60_3381 3721042 3721827 - integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene3350 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3381 CH60_3382 CH60_3382 CH60_3382 3721881 3722396 - transposase family protein [L] COG2963 Transposase and inactivated derivatives gene gene3351 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3382 CH60_3383 CH60_3383 CH60_3383 3722447 3723190 + hypothetical protein conserved hypothetical protein~[S] COG3519 Uncharacterized protein conserved in bacteria gene gene3352 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3383 CH60_3384 CH60_3384 CH60_3384 3723154 3724242 + hypothetical protein conserved hypothetical protein~[S] COG3520 Uncharacterized protein conserved in bacteria gene gene3353 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3384 CH60_3385 CH60_3385 CH60_3385 3724368 3725684 + putative fHA domain protein [T] COG3456 Uncharacterized conserved protein%2C contains FHA domain gene gene3354 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3385 CH60_3386 CH60_3386 CH60_3386 3725684 3726229 + type VI secretion lipofamily protein [S] COG3521 Uncharacterized protein conserved in bacteria gene gene3355 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3386 CH60_3387 CH60_3387 CH60_3387 3726232 3727578 + hypothetical protein conserved hypothetical protein~[S] COG3522 Uncharacterized protein conserved in bacteria gene gene3356 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3387 CH60_3388 CH60_3388 CH60_3388 3727593 3728345 + type IV/VI secretion system%2C DotU family domain protein IV_VI_DotU: type IV/VI secretion system%2C DotU family domain protein~[S] COG3455 Uncharacterized protein conserved in bacteria gene gene3357 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3388 CH60_3389 CH60_3389 clpV clpV 3728356 3730959 + type VI secretion ATPase%2C ClpV1 family VI_ClpV1: type VI secretion ATPase%2C ClpV1 family~[O] COG0542 ATPases with chaperone activity%2C ATP-binding subunit gene gene3358 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3389 CH60_339 CH60_339 CH60_339 354809 355795 - dienelactone hydrolase family protein [R] COG1073 Hydrolases of the alpha/beta superfamily gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_339 CH60_3390 CH60_3390 CH60_3390 3730956 3731753 + transcriptional regulator%2C Fis family gene gene3359 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3390 CH60_3391 CH60_3391 CH60_3391 3731750 3732436 + hypothetical protein conserved hypothetical protein gene gene3360 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3391 CH60_3392 CH60_3392 CH60_3392 3732442 3733830 + hypothetical protein impA-related N-terminal family protein~[S] COG3515 Uncharacterized protein conserved in bacteria gene gene3361 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3392 CH60_3393 CH60_3393 CH60_3393 3733862 3737395 + intracellular multiplication and macrophage-killing family protein [S] COG3523 Uncharacterized protein conserved in bacteria gene gene3362 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3393 CH60_3394 CH60_3394 CH60_3394 3737538 3738320 + hypothetical protein impA-related N-terminal family protein~[S] COG3515 Uncharacterized protein conserved in bacteria gene gene3363 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3394 CH60_3395 CH60_3395 CH60_3395 3738317 3738850 + impA domain family protein [S] COG3515 Uncharacterized protein conserved in bacteria gene gene3364 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3395 CH60_3396 CH60_3396 CH60_3396 3738872 3741274 + Rhs element Vgr family protein vgr_GE: Rhs element Vgr family protein~[S] COG3501 Uncharacterized protein conserved in bacteria gene gene3365 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3396 CH60_3397 CH60_3397 CH60_3397 3741280 3741738 + hypothetical protein conserved hypothetical protein~[S] COG5435 Uncharacterized conserved protein gene gene3366 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3397 CH60_3398 CH60_3398 CH60_3398 3741731 3744595 + RHS Repeat family protein [M] COG3209 Rhs family protein gene gene3367 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3398 CH60_3399 CH60_3399 CH60_3399 3744623 3745993 + RHS repeat-associated core domain protein rhs_assc_core: RHS repeat-associated core domain protein~[M] COG3209 Rhs family protein gene gene3368 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3399 CH60_34 CH60_34 pqqL pqqL 42608 44107 - insulinase family protease [R] COG0612 Predicted Zn-dependent peptidases gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_34 CH60_340 CH60_340 CH60_340 355854 356597 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_340 CH60_3400 CH60_3400 CH60_3400 3745995 3746480 + SMI1 / KNR4 family protein gene gene3369 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3400 CH60_3401 CH60_3401 CH60_3401 3746654 3746800 - hypothetical protein conserved hypothetical protein gene gene3370 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3401 CH60_3402 CH60_3402 CH60_3402 3746797 3747021 - toxin SymE%2C type I toxin-antitoxin system family protein gene gene3371 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3402 CH60_3403 CH60_3403 CH60_3403 3747103 3747510 - helix-turn-helix family protein [K] COG1396 Predicted transcriptional regulators gene gene3372 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3403 CH60_3404 CH60_3404 CH60_3404 3747673 3747849 + impA domain family protein [S] COG3515 Uncharacterized protein conserved in bacteria gene gene3373 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3404 CH60_3405 CH60_3405 CH60_3405 3747871 3750069 + Rhs element Vgr family protein vgr_GE: Rhs element Vgr family protein~[S] COG3501 Uncharacterized protein conserved in bacteria gene gene3374 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3405 CH60_3406 CH60_3406 CH60_3406 3750072 3750494 + hypothetical protein conserved hypothetical protein~[S] COG5435 Uncharacterized conserved protein gene gene3375 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3406 CH60_3407 CH60_3407 CH60_3407 3750539 3755077 + RHS repeat-associated core domain protein rhs_assc_core: RHS repeat-associated core domain protein~[M] COG3209 Rhs family protein gene gene3376 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3407 CH60_3408 CH60_3408 CH60_3408 3755086 3755880 + hypothetical protein conserved hypothetical protein gene gene3377 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3408 CH60_3409 CH60_3409 CH60_3409 3756227 3757126 - xylose isomerase-like TIM barrel family protein [G] COG1082 Sugar phosphate isomerases/epimerases gene gene3378 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3409 CH60_341 CH60_341 CH60_341 356597 356875 + putative transposase Orf A%2C insertion element IS100 [L] COG4584 Transposase and inactivated derivatives gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_341 CH60_3410 CH60_3410 CH60_3410 3757123 3758253 - oxidoreductase%2C NAD-binding Rossmann fold family protein [R] COG0673 Predicted dehydrogenases and related proteins gene gene3379 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3410 CH60_3411 CH60_3411 CH60_3411 3758523 3759389 + helix-turn-helix domain protein [K] COG2207 AraC-type DNA-binding domain-containing proteins gene gene3380 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3411 CH60_3412 CH60_3412 CH60_3412 3759551 3760054 - rbsD / FucU transport family protein [G] COG1869 ABC-type ribose transport system%2C auxiliary component gene gene3381 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3412 CH60_3413 CH60_3413 CH60_3413 3760060 3760989 - phosphomethylpyrimidine kinase family protein [G] COG0524 Sugar kinases%2C ribokinase family gene gene3382 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3413 CH60_3414 CH60_3414 deoC deoC 3761146 3761847 - deoxyribose-phosphate aldolase deoC: deoxyribose-phosphate aldolase~[F] COG0274 Deoxyribose-phosphate aldolase gene gene3383 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3414 CH60_3415 CH60_3415 ssuE ssuE 3762318 3762899 + FMN reductase FMN_reduc_SsuE: FMN reductase~[R] COG0431 Predicted flavoprotein gene gene3384 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3415 CH60_3416 CH60_3416 CH60_3416 3762914 3764051 + putative alkanesulfonates-binding protein%3BABC transporter%2C substrate-binding%2C aliphatic sulfonates family protein pseudogene gene3385 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3416 CH60_3418 CH60_3418 ssuD ssuD 3764070 3765218 + alkanesulfonate monooxygenase%2C FMNH(2)-dependent alk_sulf_monoox: alkanesulfonate monooxygenase%2C FMNH(2)-dependent~[C] COG2141 Coenzyme F420-dependent N5%2CN10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases gene gene3386 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3418 CH60_3419 CH60_3419 CH60_3419 3765230 3766024 + binding--dependent transport system inner membrane component family protein [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system%2C permease component gene gene3387 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3419 CH60_342 CH60_342 CH60_342 356875 357654 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_342 CH60_3420 CH60_3420 CH60_3420 3766021 3766836 + ABC transporter family protein [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system%2C ATPase component gene gene3388 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3420 CH60_3421 CH60_3421 CH60_3421 3767455 3767658 - relB antitoxin family protein [L] COG3077 DNA-damage-inducible protein J gene gene3389 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3421 CH60_3422 CH60_3422 CH60_3422 3768112 3769467 + permease family protein [R] COG2252 Permeases gene gene3390 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3422 CH60_3423 CH60_3423 CH60_3423 3769816 3771465 + Na+/H+ antiporter a_cpa1: Na+/H+ antiporter~[P] COG0025 NhaP-type Na+/H+ and K+/H+ antiporters gene gene3391 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3423 CH60_3424 CH60_3424 CH60_3424 3771683 3772870 - hypothetical protein conserved hypothetical protein gene gene3392 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3424 CH60_3425 CH60_3425 lpxL lpxL 3773022 3773942 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein~[M] COG1560 Lauroyl/myristoyl acyltransferase gene gene3393 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3425 CH60_3426 CH60_3426 CH60_3426 3774736 3775725 + periplasmic binding domain protein [G] COG1879 ABC-type sugar transport system%2C periplasmic component gene gene3394 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3426 CH60_3427 CH60_3427 ccmA ccmA 3775929 3777425 + heme ABC exporter%2C ATP-binding protein CcmA ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene3395 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3427 CH60_3428 CH60_3428 CH60_3428 3777418 3778407 + branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene3396 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3428 CH60_3429 CH60_3429 CH60_3429 3778409 3779362 + branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene3397 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3429 CH60_343 CH60_343 CH60_343 357926 359083 + chorismate mutase CM_P_1: chorismate mutase~[E] COG0077 Prephenate dehydratase gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_343 CH60_3430 CH60_3430 CH60_3430 3779381 3781018 + putative carbohydrate kinase [C] COG1069 Ribulose kinase gene gene3398 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3430 CH60_3431 CH60_3431 CH60_3431 3781015 3781620 + SIS domain protein [M] COG0794 Predicted sugar phosphate isomerase involved in capsule formation gene gene3399 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3431 CH60_3432 CH60_3432 CH60_3432 3781810 3782661 - hypothetical protein glutathione S-transferase%2C N-terminal domain protein~[O] COG0625 Glutathione S-transferase gene gene3400 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3432 CH60_3433 CH60_3433 CH60_3433 3782915 3784261 + esterase-like activity of phytase family protein [S] COG4222 Uncharacterized protein conserved in bacteria gene gene3401 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3433 CH60_3434 CH60_3434 CH60_3434 3784368 3785543 - hypothetical protein conserved hypothetical protein~[O] COG1076 DnaJ-domain-containing proteins 1 gene gene3402 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3434 CH60_3435 CH60_3435 CH60_3435 3785948 3786406 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene3403 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3435 CH60_3436 CH60_3436 CH60_3436 3786589 3786801 - 'Cold-shock' DNA-binding domain protein [K] COG1278 Cold shock proteins gene gene3404 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3436 CH60_3437 CH60_3437 CH60_3437 3787061 3787273 - 'Cold-shock' DNA-binding domain protein [K] COG1278 Cold shock proteins gene gene3405 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3437 CH60_3438 CH60_3438 slyB slyB 3787806 3788273 - outer membrane lipoprotein slyB [M] COG3133 Outer membrane lipoprotein gene gene3406 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3438 CH60_3439 CH60_3439 CH60_3439 3788749 3789561 + metallo-beta-lactamase superfamily protein [R] COG0491 Zn-dependent hydrolases%2C including glyoxylases gene gene3407 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3439 CH60_344 CH60_344 tyrA tyrA 359188 360309 - chorismate mutase CM_T: chorismate mutase~[E] COG0287 Prephenate dehydrogenase gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_344 CH60_3440 CH60_3440 CH60_3440 3789626 3790516 + NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase family protein [I] COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases gene gene3408 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3440 CH60_3441 CH60_3441 CH60_3441 3790694 3791089 + carboxymuconolactone decarboxylase family protein [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit gene gene3409 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3441 CH60_3442 CH60_3442 CH60_3442 3791243 3792607 + sugar (and other) transporter family protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene3410 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3442 CH60_3443 CH60_3443 CH60_3443 3792697 3793359 + bacterial regulatory s%2C gntR family protein [K] COG1802 Transcriptional regulators gene gene3411 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3443 CH60_3444 CH60_3444 CH60_3444 3793425 3793901 + hypothetical protein conserved hypothetical protein gene gene3412 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3444 CH60_3445 CH60_3445 fis fis 3794655 3794951 - DNA-binding protein fis [KL] COG2901 Factor for inversion stimulation Fis%2C transcriptional activator gene gene3413 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3445 CH60_3446 CH60_3446 dusB dusB 3794976 3795941 - tRNA-dihydrouridine synthase B [J] COG0042 tRNA-dihydrouridine synthase gene gene3414 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3446 CH60_3447 CH60_3447 prmA prmA 3796530 3797411 - ribosomal protein L11 methyltransferase prmA: ribosomal protein L11 methyltransferase~[J] COG2264 Ribosomal protein L11 methylase gene gene3415 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3447 CH60_3448 CH60_3448 panF panF 3797487 3798941 - sodium/pantothenate symporter panF: sodium/pantothenate symporter~[H] COG4145 Na+/panthothenate symporter gene gene3416 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3448 CH60_3449 CH60_3449 CH60_3449 3798931 3799173 - hypothetical protein conserved hypothetical protein~[S] COG3924 Predicted membrane protein gene gene3417 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3449 CH60_345 CH60_345 CH60_345 360322 361392 - 3-deoxy-7-phosphoheptulonate synthase aroFGH: 3-deoxy-7-phosphoheptulonate synthase~[E] COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_345 CH60_3450 CH60_3450 CH60_3450 3799985 3800161 + hypothetical protein conserved hypothetical protein gene gene3418 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3450 CH60_3451 CH60_3451 accC accC 3800407 3801756 - acetyl-CoA carboxylase%2C biotin carboxylase subunit accC: acetyl-CoA carboxylase%2C biotin carboxylase subunit~[I] COG0439 Biotin carboxylase gene gene3419 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3451 CH60_3452 CH60_3452 accB accB 3801768 3802232 - acetyl-CoA carboxylase%2C biotin carboxyl carrier protein BCCP: acetyl-CoA carboxylase%2C biotin carboxyl carrier protein~[I] COG0511 Biotin carboxyl carrier protein gene gene3420 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3452 CH60_3453 CH60_3453 aroQ aroQ 3802390 3802842 - 3-dehydroquinate dehydratase%2C type II aroQ: 3-dehydroquinate dehydratase%2C type II~[E] COG0757 3-dehydroquinate dehydratase II gene gene3421 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3453 CH60_3454 CH60_3454 CH60_3454 3803105 3803725 - ferric reductase like transmembrane component family protein [S] COG2717 Predicted membrane protein gene gene3422 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3454 CH60_3455 CH60_3455 CH60_3455 3803725 3804825 - oxidoreductase molybdopterin binding domain protein [R] COG2041 Sulfite oxidase and related enzymes gene gene3423 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3455 CH60_3456 CH60_3456 CH60_3456 3805048 3806025 - quinone oxidoreductase%2C YhdH/YhfP family protein oxido_YhdH: quinone oxidoreductase%2C YhdH/YhfP family protein~[CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases gene gene3424 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3456 CH60_3457 CH60_3457 CH60_3457 3806426 3808342 + EAL domain protein [T] COG2200 FOG: EAL domain gene gene3425 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3457 CH60_3458 CH60_3458 mreB mreB 3808679 3809722 + rod shape-determining protein mreB [D] COG1077 Actin-like ATPase involved in cell morphogenesis gene gene3426 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3458 CH60_3459 CH60_3459 mreC mreC 3809926 3810921 + rod shape-determining protein MreC mreC: rod shape-determining protein MreC~[M] COG1792 Cell shape-determining protein gene gene3427 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3459 CH60_346 CH60_346 CH60_346 361625 362341 + response regulator [KT] COG3279 Response regulator of the LytR/AlgR family gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_346 CH60_3460 CH60_3460 mreD mreD 3810918 3811406 + rod shape-determining protein MreD shape_MreD: rod shape-determining protein MreD~[M] COG2891 Cell shape-determining protein gene gene3428 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3460 CH60_3461 CH60_3461 maf maf 3811420 3812013 + septum formation protein Maf maf: septum formation protein Maf~[D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation gene gene3429 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3461 CH60_3462 CH60_3462 rng rng 3812003 3813472 + ribonuclease G [J] COG1530 Ribonucleases G and E gene gene3430 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3462 CH60_3463 CH60_3463 CH60_3463 3813566 3817489 + hypothetical protein conserved hypothetical protein~[S] COG3164 Predicted membrane protein gene gene3431 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3463 CH60_3464 CH60_3464 CH60_3464 3817486 3818355 + carbon-nitrogen hydrolase family protein [R] COG0388 Predicted amidohydrolase gene gene3432 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3464 CH60_3465 CH60_3465 CH60_3465 3818367 3819812 + modulator of DNA gyrase family protein [R] COG0312 Predicted Zn-dependent proteases and their inactivated homologs gene gene3433 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3465 CH60_3466 CH60_3466 CH60_3466 3820015 3822873 - RHS repeat-associated core domain protein rhs_assc_core: RHS repeat-associated core domain protein~[M] COG3209 Rhs family protein gene gene3434 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3466 CH60_3467 CH60_3467 CH60_3467 3822934 3825765 - RHS repeat-associated core domain protein rhs_assc_core: RHS repeat-associated core domain protein~[M] COG3209 Rhs family protein gene gene3435 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3467 CH60_3468 CH60_3468 CH60_3468 3825966 3826325 - putative exported protein gene gene3436 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3468 CH60_3469 CH60_3469 CH60_3469 3826322 3826723 - D-alanyl-D-alanine carboxypeptidase family protein gene gene3437 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3469 CH60_347 CH60_347 CH60_347 362770 363450 + anaerobic c4-dicarboxylate membrane transporter family protein [R] COG2704 Anaerobic C4-dicarboxylate transporter gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_347 CH60_3470 CH60_3470 CH60_3470 3826736 3827038 - putative membrane protein gene gene3438 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3470 CH60_3471 CH60_3471 CH60_3471 3827172 3831662 - virulence plasmid 65kDa B family protein gene gene3439 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3471 CH60_3472 CH60_3472 CH60_3472 3831719 3835312 - putative insecticidal toxin complex protein TcaB gene gene3440 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3472 CH60_3473 CH60_3473 CH60_3473 3835353 3837860 - virulence plasmid 28.1kDa A family protein gene gene3441 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3473 CH60_3474 CH60_3474 CH60_3474 3838096 3838908 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene3442 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3474 CH60_3475 CH60_3475 CH60_3475 3839223 3840134 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene3443 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3475 CH60_3476 CH60_3476 CH60_3476 3840437 3840640 + hypothetical protein conserved hypothetical protein gene gene3444 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3476 CH60_3477 CH60_3477 CH60_3477 3840648 3841583 + efflux transporter%2C RND family%2C MFP subunit RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[V] COG1566 Multidrug resistance efflux pump gene gene3445 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3477 CH60_3478 CH60_3478 CH60_3478 3841585 3843540 + fusaric acid resistance family protein [S] COG1289 Predicted membrane protein gene gene3446 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3478 CH60_3479 CH60_3479 CH60_3479 3843807 3844940 + aldehyde dehydrogenase family protein [C] COG1012 NAD-dependent aldehyde dehydrogenases gene gene3447 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3479 CH60_348 CH60_348 CH60_348 363519 364115 + anaerobic c4-dicarboxylate membrane transporter family protein [R] COG2704 Anaerobic C4-dicarboxylate transporter gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_348 CH60_3480 CH60_3480 CH60_3480 3844937 3845275 + aldehyde dehydrogenase family protein [C] COG1012 NAD-dependent aldehyde dehydrogenases gene gene3448 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3480 CH60_3481 CH60_3481 CH60_3481 3845470 3845943 + ribonuclease family protein gene gene3449 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3481 CH60_3482 CH60_3482 CH60_3482 3845948 3846229 + hypothetical protein conserved hypothetical protein~[K] COG2732 Barstar%2C RNAse (barnase) inhibitor gene gene3450 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3482 CH60_3483 CH60_3483 CH60_3483 3846341 3846889 - hypothetical protein conserved hypothetical protein~[S] COG3028 Uncharacterized protein conserved in bacteria gene gene3451 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3483 CH60_3484 CH60_3484 CH60_3484 3847070 3848410 + modulator of DNA gyrase family protein [R] COG0312 Predicted Zn-dependent proteases and their inactivated homologs gene gene3452 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3484 CH60_3485 CH60_3485 CH60_3485 3848695 3849303 + hypothetical protein conserved hypothetical protein gene gene3453 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3485 CH60_3486 CH60_3486 cybC cybC 3849511 3849897 + soluble cytochrome b562 [C] COG3783 Soluble cytochrome b562 gene gene3454 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3486 CH60_3487 CH60_3487 CH60_3487 3850113 3850523 - hypothetical protein transcription elongation factor%2C GreA/GreB%2C C-term family protein~[K] COG0782 Transcription elongation factor gene gene3455 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3487 CH60_3488 CH60_3488 treC treC 3850876 3852543 - alpha%2Calpha-phosphotrehalase trehalose_treC: alpha%2Calpha-phosphotrehalase~[G] COG0366 Glycosidases gene gene3456 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3488 CH60_3489 CH60_3489 treP treP 3852638 3854053 - PTS system%2C trehalose-specific IIBC component PTS-IIBC-Tre: PTS system%2C trehalose-specific IIBC component~[G] COG1263 Phosphotransferase system IIC components%2C glucose/maltose/N-acetylglucosamine-specific gene gene3457 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3489 CH60_349 CH60_349 CH60_349 364438 365205 + hypothetical protein conserved hypothetical protein~[M] COG3137 Putative salt-induced outer membrane protein gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_349 CH60_3490 CH60_3490 treR treR 3854464 3855417 - trehalose operon repressor trehalos_R_Ecol: trehalose operon repressor~[K] COG1609 Transcriptional regulators gene gene3458 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3490 CH60_3491 CH60_3491 CH60_3491 3855651 3856127 - putative exported protein gene gene3459 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3491 CH60_3492 CH60_3492 CH60_3492 3856426 3856812 - reactive intermediate/imine deaminase family protein [J] COG0251 Putative translation initiation inhibitor%2C yjgF family gene gene3460 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3492 CH60_3493 CH60_3493 pyrI pyrI 3856950 3857414 - aspartate carbamoyltransferase%2C regulatory subunit ATCase_reg: aspartate carbamoyltransferase%2C regulatory subunit~[F] COG1781 Aspartate carbamoyltransferase%2C regulatory subunit gene gene3461 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3493 CH60_3494 CH60_3494 pyrB pyrB 3857426 3858361 - aspartate carbamoyltransferase asp_carb_tr: aspartate carbamoyltransferase~[F] COG0540 Aspartate carbamoyltransferase%2C catalytic chain gene gene3462 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3494 CH60_3495 CH60_3495 ptsO ptsO 3858699 3858971 - phosphocarrier protein NPr [G] COG1925 Phosphotransferase system%2C HPr-related proteins gene gene3463 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3495 CH60_3496 CH60_3496 CH60_3496 3858968 3859822 - hypothetical protein conserved hypothetical protein~[R] COG1660 Predicted P-loop-containing kinase gene gene3464 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3496 CH60_3497 CH60_3497 ptsN ptsN 3860128 3860610 - PTS IIA-like nitrogen-regulatory protein PtsN nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN~[GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) gene gene3465 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3497 CH60_3498 CH60_3498 raiA raiA 3860908 3861015 - ribosome-associated inhibitor A yfiA: ribosomal subunit interface protein~[J] COG1544 Ribosome-associated protein Y (PSrp-1) gene gene3466 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3498 CH60_3499 CH60_3499 rpoN rpoN 3861039 3862472 - RNA polymerase sigma-54 factor rpoN_sigma: RNA polymerase sigma-54 factor~[K] COG1508 DNA-directed RNA polymerase specialized sigma subunit%2C sigma54 homolog gene gene3467 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3499 CH60_35 CH60_35 CH60_35 44294 44410 + hypothetical protein conserved hypothetical protein gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_35 CH60_350 CH60_350 rplS rplS 365467 365814 - ribosomal protein L19 rplS_bact: ribosomal protein L19~[J] COG0335 Ribosomal protein L19 gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_350 CH60_3500 CH60_3500 lptB lptB 3862534 3863259 - LPS export ABC transporter ATP-binding protein LPS_export_lptB: LPS export ABC transporter ATP-binding protein~[R] COG1137 ABC-type (unclassified) transport system%2C ATPase component gene gene3468 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3500 CH60_3501 CH60_3501 lptA lptA 3863266 3863811 - lipopolysaccharide transport periplasmic protein LptA outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA~[S] COG1934 Uncharacterized protein conserved in bacteria gene gene3469 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3501 CH60_3502 CH60_3502 lptC lptC 3863795 3864358 - LPS export ABC transporter periplasmic protein LptC lptC_YrbK: LPS export ABC transporter periplasmic protein LptC~[S] COG3117 Uncharacterized protein conserved in bacteria gene gene3470 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3502 CH60_3503 CH60_3503 kdsC kdsC 3864355 3864918 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase [R] COG1778 Low specificity phosphatase (HAD superfamily) gene gene3471 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3503 CH60_3504 CH60_3504 CH60_3504 3865167 3866153 - sugar isomerase%2C KpsF/GutQ family protein kpsF: sugar isomerase%2C KpsF/GutQ family protein~[M] COG0794 Predicted sugar phosphate isomerase involved in capsule formation gene gene3472 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3504 CH60_3505 CH60_3505 CH60_3505 3866264 3867238 - sodium/calcium exchanger family protein [P] COG0530 Ca2+/Na+ antiporter gene gene3473 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3505 CH60_3506 CH60_3506 CH60_3506 3867503 3868321 + ABC transporter family protein [Q] COG1127 ABC-type transport system involved in resistance to organic solvents%2C ATPase component gene gene3474 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3506 CH60_3507 CH60_3507 CH60_3507 3868539 3869321 + putative phospholipid ABC transporter permease protein mlaE [Q] COG0767 ABC-type transport system involved in resistance to organic solvents%2C permease component gene gene3475 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3507 CH60_3508 CH60_3508 mlaD mlaD 3869326 3869883 + outer membrane lipid asymmetry maintenance protein MlaD OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD~[Q] COG1463 ABC-type transport system involved in resistance to organic solvents%2C periplasmic component gene gene3476 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3508 CH60_3509 CH60_3509 CH60_3509 3869896 3870519 + toluene tolerance%2C Ttg2 family protein [Q] COG2854 ABC-type transport system involved in resistance to organic solvents%2C auxiliary component gene gene3477 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3509 CH60_351 CH60_351 trmD trmD 365895 366635 - tRNA (guanine(37)-N(1))-methyltransferase trmD: tRNA (guanine(37)-N(1))-methyltransferase~[J] COG0336 tRNA-(guanine-N1)-methyltransferase gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_351 CH60_3510 CH60_3510 CH60_3510 3870555 3870857 + STAS domain protein [R] COG3113 Predicted NTP binding protein (contains STAS domain) gene gene3478 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3510 CH60_3511 CH60_3511 CH60_3511 3871004 3871258 + bolA-like family protein [K] COG5007 Predicted transcriptional regulator%2C BolA superfamily gene gene3479 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3511 CH60_3512 CH60_3512 murA murA 3871412 3872674 + UDP-N-acetylglucosamine 1-carboxyvinyltransferase murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase~[M] COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase gene gene3480 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3512 CH60_3513 CH60_3513 degS degS 3872855 3873943 - periplasmic serine peptidase DegS protease_degS: periplasmic serine peptidase DegS~[O] COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C contain C-terminal PDZ domain gene gene3481 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3513 CH60_3514 CH60_3514 CH60_3514 3874169 3874627 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene3482 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3514 CH60_3515 CH60_3515 leuA leuA 3874774 3876336 + 2-isopropylmalate synthase leuA_bact: 2-isopropylmalate synthase~[E] COG0119 Isopropylmalate/homocitrate/citramalate synthases gene gene3483 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3515 CH60_3516 CH60_3516 leuB leuB 3876339 3877430 + 3-isopropylmalate dehydrogenase leuB: 3-isopropylmalate dehydrogenase~[CE] COG0473 Isocitrate/isopropylmalate dehydrogenase gene gene3484 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3516 CH60_3517 CH60_3517 leuC leuC 3877432 3878862 + 3-isopropylmalate dehydratase%2C large subunit leuC: 3-isopropylmalate dehydratase%2C large subunit~[E] COG0065 3-isopropylmalate dehydratase large subunit gene gene3485 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3517 CH60_3518 CH60_3518 leuD leuD 3878877 3879224 + 3-isopropylmalate dehydratase%2C small subunit leuD: 3-isopropylmalate dehydratase%2C small subunit~[E] COG0066 3-isopropylmalate dehydratase small subunit gene gene3486 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3518 CH60_3519 CH60_3519 CH60_3519 3879268 3879855 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene3487 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3519 CH60_352 CH60_352 rimM rimM 366674 367222 - 16S rRNA processing protein RimM 16S_RimM: 16S rRNA processing protein RimM~[J] COG0806 RimM protein%2C required for 16S rRNA processing gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_352 CH60_3520 CH60_3520 CH60_3520 3879834 3880046 - putative transposition helper domain protein [L] COG1484 DNA replication protein gene gene3488 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3520 CH60_3521 CH60_3521 CH60_3521 3880046 3881068 - helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene3489 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3521 CH60_3522 CH60_3522 CH60_3522 3881127 3881438 + putative 3-isopropylmalate dehydratase small subunit [E] COG0066 3-isopropylmalate dehydratase small subunit gene gene3490 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3522 CH60_3523 CH60_3523 setA setA 3881679 3882860 - sugar efflux transporter A [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene3491 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3523 CH60_3524 CH60_3524 CH60_3524 3883524 3885185 + bacterial extracellular solute-binding s%2C 5 Middle family protein [R] COG4533 ABC-type uncharacterized transport system%2C periplasmic component gene gene3492 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3524 CH60_3525 CH60_3525 CH60_3525 3885286 3885570 - putative membrane protein gene gene3493 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3525 CH60_3526 CH60_3526 thiB thiB 3886125 3887117 + thiamin/thiamine pyrophosphate ABC transporter%2C thiamin/thiamine pyrophospate-binding protein thiB: thiamin/thiamin pyrophosphate ABC transporter%2C thiamin/thiamin pyrophospate-binding protein~[H] COG4143 ABC-type thiamine transport system%2C periplasmic component gene gene3494 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3526 CH60_3527 CH60_3527 thiP thiP 3887093 3888700 + thiamine/thiamine pyrophosphate ABC transporter%2C permease protein thiP: thiamine/thiamine pyrophosphate ABC transporter%2C permease protein~[P] COG1178 ABC-type Fe3+ transport system%2C permease component gene gene3495 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3527 CH60_3528 CH60_3528 thiQ thiQ 3888687 3889397 + thiamine ABC transporter%2C ATP-binding protein thiQ: thiamine ABC transporter%2C ATP-binding protein~[H] COG3840 ABC-type thiamine transport system%2C ATPase component gene gene3496 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3528 CH60_3529 CH60_3529 CH60_3529 3889466 3890233 - hypothetical protein conserved hypothetical protein~[S] COG0586 Uncharacterized membrane-associated protein gene gene3497 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3529 CH60_353 CH60_353 rpsP rpsP 367244 367492 - ribosomal protein S16 S16: ribosomal protein S16~[J] COG0228 Ribosomal protein S16 gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_353 CH60_3530 CH60_3530 CH60_3530 3890429 3892798 + DNA polymerase family B%2C exonuclease domain protein [L] COG0417 DNA polymerase elongation subunit (family B) gene gene3498 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3530 CH60_3531 CH60_3531 CH60_3531 3893259 3896165 + DEAD/DEAH box helicase family protein [KL] COG0553 Superfamily II DNA/RNA helicases%2C SNF2 family gene gene3499 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3531 CH60_3532 CH60_3532 CH60_3532 3896421 3896774 - hypothetical protein conserved hypothetical protein gene gene3500 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3532 CH60_3533 CH60_3533 CH60_3533 3896796 3900290 - intracellular multiplication and macrophage-killing family protein [S] COG3523 Uncharacterized protein conserved in bacteria gene gene3501 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3533 CH60_3534 CH60_3534 CH60_3534 3900299 3901909 - type IV/VI secretion system%2C DotU family domain protein IV_VI_DotU: type IV/VI secretion system%2C DotU family domain protein~[S] COG3455 Uncharacterized protein conserved in bacteria gene gene3502 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3534 CH60_3535 CH60_3535 CH60_3535 3901906 3903261 - hypothetical protein conserved hypothetical protein~[S] COG3522 Uncharacterized protein conserved in bacteria gene gene3503 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3535 CH60_3536 CH60_3536 CH60_3536 3903363 3903854 - type VI secretion lipofamily protein [S] COG3521 Uncharacterized protein conserved in bacteria gene gene3504 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3536 CH60_3537 CH60_3537 CH60_3537 3903847 3904212 - hypothetical protein conserved hypothetical protein gene gene3505 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3537 CH60_3538 CH60_3538 CH60_3538 3904218 3904835 - hypothetical protein conserved hypothetical protein gene gene3506 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3538 CH60_3539 CH60_3539 CH60_3539 3904828 3905931 - pentapeptide repeats family protein [S] COG1357 Uncharacterized low-complexity proteins gene gene3507 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3539 CH60_354 CH60_354 ffh ffh 367720 369081 - signal recognition particle protein ffh: signal recognition particle protein~[U] COG0541 Signal recognition particle GTPase gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_354 CH60_3540 CH60_3540 CH60_3540 3905957 3908176 - pentapeptide repeats family protein [S] COG1357 Uncharacterized low-complexity proteins gene gene3508 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3540 CH60_3541 CH60_3541 CH60_3541 3908189 3910536 - Rhs element Vgr family protein pseudogene gene3509 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3541 CH60_3543 CH60_3543 clpV clpV 3910640 3913228 - type VI secretion ATPase%2C ClpV1 family VI_ClpV1: type VI secretion ATPase%2C ClpV1 family~[O] COG0542 ATPases with chaperone activity%2C ATP-binding subunit gene gene3510 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3543 CH60_3544 CH60_3544 CH60_3544 3913246 3914229 - hypothetical protein conserved hypothetical protein~[S] COG3520 Uncharacterized protein conserved in bacteria gene gene3511 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3544 CH60_3545 CH60_3545 CH60_3545 3914222 3916066 - hypothetical protein conserved hypothetical protein~[S] COG3519 Uncharacterized protein conserved in bacteria gene gene3512 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3545 CH60_3546 CH60_3546 CH60_3546 3916099 3916542 - lysozyme family protein [S] COG3518 Uncharacterized protein conserved in bacteria gene gene3513 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3546 CH60_3547 CH60_3547 CH60_3547 3916616 3917134 - hypothetical protein conserved hypothetical protein~[S] COG3157 Hemolysin-coregulated protein (uncharacterized) gene gene3514 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3547 CH60_3548 CH60_3548 CH60_3548 3917297 3918799 - hypothetical protein conserved hypothetical protein~[S] COG3517 Uncharacterized protein conserved in bacteria gene gene3515 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3548 CH60_3549 CH60_3549 CH60_3549 3918808 3919368 - hypothetical protein conserved hypothetical protein~[S] COG3516 Uncharacterized protein conserved in bacteria gene gene3516 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3549 CH60_355 CH60_355 ypjD ypjD 369247 370038 + inner membrane protein ypjD [R] COG4137 ABC-type uncharacterized transport system%2C permease component gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_355 CH60_3550 CH60_3550 CH60_3550 3919379 3920365 - hypothetical protein impA-related N-terminal family protein~[S] COG3515 Uncharacterized protein conserved in bacteria gene gene3517 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3550 CH60_3551 CH60_3551 CH60_3551 3920722 3921465 + hypothetical protein conserved hypothetical protein~[S] COG5419 Uncharacterized conserved protein gene gene3518 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3551 CH60_3552 CH60_3552 CH60_3552 3922688 3923308 + RNA pseudouridylate synthase family protein [J] COG0564 Pseudouridylate synthases%2C 23S RNA-specific gene gene3519 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3552 CH60_3553 CH60_3553 djlA djlA 3923606 3924439 - dnaJ-like protein djlA [O] COG1076 DnaJ-domain-containing proteins 1 gene gene3520 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3553 CH60_3554 CH60_3554 CH60_3554 3924714 3926966 + organic solvent tolerance family protein [M] COG1452 Organic solvent tolerance protein OstA gene gene3521 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3554 CH60_3555 CH60_3555 CH60_3555 3927034 3928338 + PPIC-type PPIASE domain protein [O] COG0760 Parvulin-like peptidyl-prolyl isomerase gene gene3522 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3555 CH60_3556 CH60_3556 pdxA pdxA 3928322 3929317 + 4-hydroxythreonine-4-phosphate dehydrogenase PdxA pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA~[H] COG1995 Pyridoxal phosphate biosynthesis protein gene gene3523 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3556 CH60_3557 CH60_3557 rsmA rsmA 3929310 3930128 + ribosomal RNA small subunit methyltransferase A ksgA: ribosomal RNA small subunit methyltransferase A~[J] COG0030 Dimethyladenosine transferase (rRNA methylation) gene gene3524 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3557 CH60_3558 CH60_3558 CH60_3558 3930142 3930519 + hypothetical protein conserved hypothetical protein~[P] COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport gene gene3525 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3558 CH60_3559 CH60_3559 apaH apaH 3930536 3931405 + Diadenosine tetraphosphatase apaH: bis~[T] COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases%3B bis gene gene3526 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3559 CH60_356 CH60_356 CH60_356 370110 371390 + CBS domain protein [P] COG4536 Putative Mg2+ and Co2+ transporter CorB gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_356 CH60_3560 CH60_3560 CH60_3560 3931495 3931959 - hypothetical protein conserved hypothetical protein gene gene3527 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3560 CH60_3561 CH60_3561 folA folA 3932801 3933283 - dihydrofolate reductase [H] COG0262 Dihydrofolate reductase gene gene3528 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3561 CH60_3562 CH60_3562 CH60_3562 3933433 3933888 - hypothetical protein conserved hypothetical protein~[S] COG3610 Uncharacterized conserved protein gene gene3529 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3562 CH60_3563 CH60_3563 CH60_3563 3933885 3934685 - hypothetical protein conserved hypothetical protein~[S] COG2966 Uncharacterized conserved protein gene gene3530 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3563 CH60_3564 CH60_3564 CH60_3564 3935009 3935623 + lysE type translocator family protein [E] COG1280 Putative threonine efflux protein gene gene3531 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3564 CH60_3565 CH60_3565 carB carB 3935851 3939084 - carbamoyl-phosphate synthase%2C large subunit CPSaseII_lrg: carbamoyl-phosphate synthase%2C large subunit~[EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) gene gene3532 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3565 CH60_3566 CH60_3566 carA carA 3939100 3940275 - carbamoyl-phosphate synthase%2C small subunit CPSaseIIsmall: carbamoyl-phosphate synthase%2C small subunit~[EF] COG0505 Carbamoylphosphate synthase small subunit gene gene3533 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3566 CH60_3567 CH60_3567 dapB dapB 3940748 3941569 - 4-hydroxy-tetrahydrodipicolinate reductase dapB: 4-hydroxy-tetrahydrodipicolinate reductase~[E] COG0289 Dihydrodipicolinate reductase gene gene3534 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3567 CH60_3568 CH60_3568 CH60_3568 3942022 3942480 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene3535 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3568 CH60_3569 CH60_3569 ispH ispH 3942862 3943815 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase~[IM] COG0761 Penicillin tolerance protein gene gene3536 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3569 CH60_357 CH60_357 luxS luxS 371479 371994 - S-ribosylhomocysteine lyase [T] COG1854 LuxS protein involved in autoinducer AI2 synthesis gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_357 CH60_3570 CH60_3570 CH60_3570 3943796 3944254 - FKBP-type peptidyl-prolyl cis-trans isomerase family protein [O] COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 gene gene3537 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3570 CH60_3571 CH60_3571 lspA lspA 3944322 3944831 - signal peptidase II lspA: signal peptidase II~[MU] COG0597 Lipoprotein signal peptidase gene gene3538 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3571 CH60_3572 CH60_3572 ileS ileS 3944831 3947647 - isoleucine--tRNA ligase ileS: isoleucine--tRNA ligase~[J] COG0060 Isoleucyl-tRNA synthetase gene gene3539 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3572 CH60_3573 CH60_3573 ribF ribF 3947679 3948617 - riboflavin biosynthesis protein RibF ribF: riboflavin biosynthesis protein RibF~[H] COG0196 FAD synthase gene gene3540 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3573 CH60_3574 CH60_3574 rpsT rpsT 3949032 3949295 + ribosomal protein S20 S20: ribosomal protein S20~[J] COG0268 Ribosomal protein S20 gene gene3541 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3574 CH60_3575 CH60_3575 CH60_3575 3949426 3950319 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene3542 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3575 CH60_3576 CH60_3576 nhaA nhaA 3950455 3951639 - Na+/H+ antiporter NhaA nhaA: Na+/H+ antiporter NhaA~[P] COG3004 Na+/H+ antiporter gene gene3543 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3576 CH60_3577 CH60_3577 dnaJ dnaJ 3951882 3953021 - chaperone protein DnaJ dnaJ_bact: chaperone protein DnaJ~[O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain gene gene3544 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3577 CH60_3578 CH60_3578 dnaK dnaK 3953133 3955043 - chaperone protein DnaK prok_dnaK: chaperone protein DnaK~[O] COG0443 Molecular chaperone gene gene3545 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3578 CH60_3579 CH60_3579 CH60_3579 3955417 3956028 + GPR1/FUN34/yaaH family protein [S] COG1584 Predicted membrane protein gene gene3546 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3579 CH60_358 CH60_358 gshA gshA 372162 373721 - glutamate--cysteine ligase glu_cys_ligase: glutamate--cysteine ligase~[H] COG2918 Gamma-glutamylcysteine synthetase gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_358 CH60_3580 CH60_3580 CH60_3580 3956317 3958764 + beta/Gamma crystallin family protein gene gene3547 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3580 CH60_3581 CH60_3581 CH60_3581 3958834 3960222 - sugar (and other) transporter family protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene3548 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3581 CH60_3582 CH60_3582 mog mog 3960350 3960937 - molybdopterin adenylyltransferase [H] COG0521 Molybdopterin biosynthesis enzymes gene gene3549 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3582 CH60_3583 CH60_3583 CH60_3583 3961225 3962177 - talB%3Btransaldolase family protein%3Btransaldolase B pseudogene gene3550 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3583 CH60_3585 CH60_3585 CH60_3585 3962709 3963485 + hypothetical protein conserved hypothetical protein~[S] COG3022 Uncharacterized protein conserved in bacteria gene gene3551 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3585 CH60_3586 CH60_3586 CH60_3586 3963917 3964027 - hypothetical protein conserved hypothetical protein gene gene3552 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3586 CH60_3587 CH60_3587 thrC thrC 3964302 3965591 - threonine synthase thrC: threonine synthase~[E] COG0498 Threonine synthase gene gene3553 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3587 CH60_3588 CH60_3588 thrB thrB 3965595 3966524 - homoserine kinase thrB: homoserine kinase~[E] COG0083 Homoserine kinase gene gene3554 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3588 CH60_3589 CH60_3589 CH60_3589 3966527 3968985 - ACT domain protein%3Baspartate kinase domain protein pseudogene gene3555 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3589 CH60_359 CH60_359 CH60_359 373804 374232 - hypothetical protein conserved hypothetical protein~[S] COG1238 Predicted membrane protein gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_359 CH60_3591 CH60_3591 CH60_3591 3969424 3969531 - hypothetical protein conserved hypothetical protein gene gene3556 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3591 CH60_3592 CH60_3592 CH60_3592 3970089 3970805 + hypothetical protein transcriptional regulatory%2C C terminal family protein~[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene3557 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3592 CH60_3593 CH60_3593 CH60_3593 3970979 3971446 - creA family protein [S] COG3045 Uncharacterized protein conserved in bacteria gene gene3558 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3593 CH60_3594 CH60_3594 CH60_3594 3971443 3971628 - hypothetical protein conserved hypothetical protein gene gene3559 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3594 CH60_3595 CH60_3595 CH60_3595 3972535 3973182 - histidine phosphatase super family protein [G] COG0406 Fructose-2%2C6-bisphosphatase gene gene3561 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3595 CH60_3596 CH60_3596 CH60_3596 3971672 3972538 + helix-turn-helix domain protein [K] COG2207 AraC-type DNA-binding domain-containing proteins gene gene3560 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3596 CH60_3597 CH60_3597 trpR trpR 3973815 3974207 - trp operon repressor trpR: trp operon repressor~[K] COG2973 Trp operon repressor gene gene3563 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3597 CH60_3598 CH60_3598 CH60_3598 3973276 3973818 + hypothetical protein conserved hypothetical protein~[S] COG1986 Uncharacterized conserved protein gene gene3562 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3598 CH60_3599 CH60_3599 CH60_3599 3974443 3976362 - soluble lytic murein transglycosylase L domain protein [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) gene gene3564 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3599 CH60_36 CH60_36 dctA dctA 44472 45761 - aerobic C4-dicarboxylate transport protein [C] COG1301 Na+/H+-dicarboxylate symporters gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_36 CH60_360 CH60_360 CH60_360 374229 374795 - HAD hydrolase%2C IA%2C variant 1 family protein HAD-SF-IA-v1: HAD hydrolase%2C IA%2C variant 1 family protein~[R] COG0637 Predicted phosphatase/phosphohexomutase gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_360 CH60_3600 CH60_3600 CH60_3600 3976932 3979658 + HAD ATPase%2C P-type%2C IC family protein ATPase_P-type: HAD ATPase%2C P-type%2C IC family protein~[P] COG0474 Cation transport ATPase gene gene3565 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3600 CH60_3601 CH60_3601 CH60_3601 3980033 3980656 + hypothetical protein conserved hypothetical protein gene gene3566 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3601 CH60_3602 CH60_3602 CH60_3602 3980677 3981954 + diguanylate cyclase domain protein GGDEF: diguanylate cyclase domain protein~[T] COG2199 FOG: GGDEF domain gene gene3567 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3602 CH60_3603 CH60_3603 CH60_3603 3981960 3982466 + ompA family protein [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins gene gene3568 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3603 CH60_3604 CH60_3604 ccmA ccmA 3982649 3984316 + heme ABC exporter%2C ATP-binding protein CcmA ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains gene gene3569 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3604 CH60_3605 CH60_3605 CH60_3605 3984462 3985592 - hypothetical protein conserved hypothetical protein~[S] COG3177 Uncharacterized conserved protein gene gene3570 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3605 CH60_3606 CH60_3606 nadR nadR 3985749 3987020 - trifunctional NAD biosynthesis/regulator protein NadR [H] COG3172 Predicted ATPase/kinase involved in NAD metabolism gene gene3571 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3606 CH60_3607 CH60_3607 radA radA 3987179 3988561 - DNA repair protein RadA sms: DNA repair protein RadA~[O] COG1066 Predicted ATP-dependent serine protease gene gene3572 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3607 CH60_3608 CH60_3608 serB serB 3988649 3989629 - phosphoserine phosphatase SerB serB: phosphoserine phosphatase SerB~[E] COG0560 Phosphoserine phosphatase gene gene3573 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3608 CH60_3609 CH60_3609 CH60_3609 3989861 3990562 + bacterial virulence factor hemolysin family protein [R] COG3726 Uncharacterized membrane protein affecting hemolysin expression gene gene3574 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3609 CH60_361 CH60_361 CH60_361 375218 375294 - tRNA-Arg tRNA gene357 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_361 CH60_3610 CH60_3610 deoD deoD 3990674 3991393 - purine nucleoside phosphorylase deoD: purine nucleoside phosphorylase~[F] COG0813 Purine-nucleoside phosphorylase gene gene3575 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3610 CH60_3611 CH60_3611 deoB deoB 3991518 3992741 - phosphopentomutase deoB: phosphopentomutase~[G] COG1015 Phosphopentomutase gene gene3576 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3611 CH60_3612 CH60_3612 deoA deoA 3992873 3994195 - thymidine phosphorylase T_phosphoryl: thymidine phosphorylase~[F] COG0213 Thymidine phosphorylase gene gene3577 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3612 CH60_3613 CH60_3613 deoC deoC 3994316 3995113 - deoxyribose-phosphate aldolase deoC: deoxyribose-phosphate aldolase~[F] COG0274 Deoxyribose-phosphate aldolase gene gene3578 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3613 CH60_3614 CH60_3614 CH60_3614 3995681 3996952 - nucleoside transporter%2C NupC family protein nupC: nucleoside transporter%2C NupC family protein~[F] COG1972 Nucleoside permease gene gene3579 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3614 CH60_3615 CH60_3615 CH60_3615 3997487 3998275 - hypothetical protein conserved hypothetical protein~[L] COG0084 Mg-dependent DNase gene gene3580 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3615 CH60_3616 CH60_3616 CH60_3616 3998312 3999580 - patatin-like phospholipase family protein [R] COG4667 Predicted esterase of the alpha-beta hydrolase superfamily gene gene3581 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3616 CH60_3617 CH60_3617 CH60_3617 3999657 3999818 - hypothetical protein conserved hypothetical protein~[S] COG5487 Small integral membrane protein gene gene3582 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3617 CH60_3618 CH60_3618 CH60_3618 3999985 4000599 - BON domain protein [R] COG2823 Predicted periplasmic or secreted lipoprotein gene gene3583 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3618 CH60_3619 CH60_3619 prfC prfC 4000926 4002515 - peptide chain release factor 3 prfC: peptide chain release factor 3~[J] COG4108 Peptide chain release factor RF-3 gene gene3584 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3619 CH60_362 CH60_362 CH60_362 375374 375450 - tRNA-Arg tRNA gene358 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_362 CH60_3620 CH60_3620 rimI rimI 4002694 4003137 - ribosomal-protein-alanine acetyltransferase rimI: ribosomal-protein-alanine acetyltransferase~[R] COG0456 Acetyltransferases gene gene3585 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3620 CH60_3621 CH60_3621 CH60_3621 4003082 4003519 - DNA polymerase III psi subunit [L] COG3050 DNA polymerase III%2C psi subunit gene gene3586 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3621 CH60_3622 CH60_3622 CH60_3622 4003632 4004675 + methyltransferase small domain protein [J] COG2813 16S RNA G1207 methylase RsmC gene gene3587 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3622 CH60_3623 CH60_3623 CH60_3623 4004932 4005018 + tRNA-Leu tRNA gene3588 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3623 CH60_3624 CH60_3624 CH60_3624 4005188 4005520 - hypothetical protein conserved hypothetical protein gene gene3589 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3624 CH60_3625 CH60_3625 CH60_3625 4005787 4006941 + diguanylate cyclase domain protein GGDEF: diguanylate cyclase domain protein~[T] COG2199 FOG: GGDEF domain gene gene3590 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3625 CH60_3626 CH60_3626 pemA pemA 4007482 4008567 - pectinesterase A [G] COG4677 Pectin methylesterase gene gene3591 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3626 CH60_3627 CH60_3627 CH60_3627 4009370 4009702 + hypothetical protein conserved hypothetical protein gene gene3592 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3627 CH60_3628 CH60_3628 CH60_3628 4010063 4013149 - acrB/AcrD/AcrF family protein [V] COG0841 Cation/multidrug efflux pump gene gene3593 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3628 CH60_3629 CH60_3629 CH60_3629 4013149 4014231 - efflux transporter%2C RND family%2C MFP subunit RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein gene gene3594 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3629 CH60_363 CH60_363 CH60_363 375508 375584 - tRNA-Arg tRNA gene359 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_363 CH60_3630 CH60_3630 CH60_3630 4014283 4014516 - hypothetical protein conserved hypothetical protein gene gene3595 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3630 CH60_3631 CH60_3631 CH60_3631 4015326 4016558 - O-Antigen ligase family protein [M] COG3307 Lipid A core - O-antigen ligase and related enzymes gene gene3596 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3631 CH60_3632 CH60_3632 rfaQ rfaQ 4016606 4017769 - putative lipopolysaccharide heptosyltransferase III heptsyl_trn_III: putative lipopolysaccharide heptosyltransferase III~[M] COG0859 ADP-heptose:LPS heptosyltransferase gene gene3597 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3632 CH60_3633 CH60_3633 lsrK lsrK 4018115 4019707 - autoinducer 2 kinase LsrK [G] COG1070 Sugar (pentulose and hexulose) kinases gene gene3598 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3633 CH60_3634 CH60_3634 lsrR lsrR 4019878 4020873 - transcriptional regulator lsrR [K] COG2390 Transcriptional regulator%2C contains sigma factor-related N-terminal domain gene gene3599 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3634 CH60_3635 CH60_3635 ccmA ccmA 4021218 4022801 + heme ABC exporter%2C ATP-binding protein CcmA ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene3600 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3635 CH60_3636 CH60_3636 CH60_3636 4022795 4023850 + branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene3601 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3636 CH60_3637 CH60_3637 CH60_3637 4023847 4024848 + branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene3602 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3637 CH60_3638 CH60_3638 lsrB lsrB 4024907 4025926 + autoinducer 2-binding protein lsrB [G] COG1879 ABC-type sugar transport system%2C periplasmic component gene gene3603 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3638 CH60_3639 CH60_3639 CH60_3639 4025982 4026857 + hypothetical protein conserved hypothetical protein~[G] COG1830 DhnA-type fructose-1%2C6-bisphosphate aldolase and related enzymes gene gene3604 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3639 CH60_364 CH60_364 CH60_364 375593 375685 - tRNA-Ser tRNA gene360 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_364 CH60_3640 CH60_3640 lsrG lsrG 4026921 4027211 + autoinducer 2-degrading protein lsrG [S] COG1359 Uncharacterized conserved protein gene gene3605 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3640 CH60_3641 CH60_3641 CH60_3641 4027512 4028003 + hypothetical protein conserved hypothetical protein gene gene3606 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3641 CH60_3642 CH60_3642 ptsP ptsP 4028065 4030623 - phosphoenolpyruvate-protein phosphotransferase PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase~[G] COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) gene gene3607 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3642 CH60_3643 CH60_3643 CH60_3643 4030988 4032070 + PTS system%2C Fru family%2C IIC component domain protein PTS_IIC_fructo: PTS system%2C Fru family%2C IIC component domain protein~[G] COG1299 Phosphotransferase system%2C fructose-specific IIC component gene gene3608 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3643 CH60_3644 CH60_3644 frwB frwB 4032411 4032731 + fructose-like phosphotransferase enzyme IIB component 2 [G] COG1445 Phosphotransferase system fructose-specific component IIB gene gene3609 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3644 CH60_3645 CH60_3645 CH60_3645 4033161 4034036 - helix-turn-helix domain protein [K] COG2207 AraC-type DNA-binding domain-containing proteins gene gene3611 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3645 CH60_3646 CH60_3646 CH60_3646 4032824 4033168 + PTS system%2C Fru family%2C IIB component domain protein FRU: PTS system%2C Fru family%2C IIB component domain protein~[G] COG1445 Phosphotransferase system fructose-specific component IIB gene gene3610 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3646 CH60_3647 CH60_3647 CH60_3647 4034038 4034574 - hypothetical protein conserved hypothetical protein gene gene3612 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3647 CH60_3648 CH60_3648 CH60_3648 4035280 4036476 + hypothetical protein conserved hypothetical protein~[S] COG4269 Predicted membrane protein gene gene3613 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3648 CH60_3649 CH60_3649 CH60_3649 4036487 4037533 + peptidase M48 family protein [O] COG0501 Zn-dependent protease with chaperone function gene gene3614 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3649 CH60_365 CH60_365 csrA csrA 376048 376233 - carbon storage regulator csrA: carbon storage regulator~[T] COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing) gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_365 CH60_3650 CH60_3650 CH60_3650 4037679 4038833 - hypothetical protein conserved hypothetical protein~[S] COG4924 Uncharacterized protein conserved in bacteria gene gene3615 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3650 CH60_3651 CH60_3651 CH60_3651 4038830 4040179 - exonuclease SbcCD%2C C subunit [S] COG4913 Uncharacterized protein conserved in bacteria gene gene3616 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3651 CH60_3652 CH60_3652 CH60_3652 4040283 4040480 + type VI secretion%2C family domain protein type VI secretion%2C VC_A0111 family domain protein gene gene3617 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3652 CH60_3653 CH60_3653 CH60_3653 4040682 4040969 + hypothetical protein conserved hypothetical protein~[S] COG3520 Uncharacterized protein conserved in bacteria gene gene3618 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3653 CH60_3654 CH60_3654 CH60_3654 4041313 4042686 - hypothetical protein conserved hypothetical protein gene gene3619 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3654 CH60_3655 CH60_3655 CH60_3655 4042658 4043380 - histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase family protein gene gene3620 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3655 CH60_3656 CH60_3656 CH60_3656 4043430 4044761 - DNA methylase family protein [L] COG0863 DNA modification methylase gene gene3621 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3656 CH60_3657 CH60_3657 CH60_3657 4044900 4045163 + transposase family protein [L] COG2801 Transposase and inactivated derivatives gene gene3622 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3657 CH60_3658 CH60_3658 CH60_3658 4045195 4045383 + putative transposase [L] COG2801 Transposase and inactivated derivatives gene gene3623 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3658 CH60_3659 CH60_3659 CH60_3659 4045785 4047101 - mcrBC 5-methylcytosine restriction system component family protein [V] COG4268 McrBC 5-methylcytosine restriction system component gene gene3624 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3659 CH60_366 CH60_366 alaS alaS 376483 379110 - alanine--tRNA ligase alaS: alanine--tRNA ligase~[J] COG0013 Alanyl-tRNA synthetase gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_366 CH60_3660 CH60_3660 CH60_3660 4047098 4049161 - AAA domain family protein [V] COG1401 GTPase subunit of restriction endonuclease gene gene3625 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3660 CH60_3661 CH60_3661 CH60_3661 4049295 4050080 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene3626 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3661 CH60_3662 CH60_3662 CH60_3662 4050040 4050318 + putative transposase Orf A%2C insertion element IS100 [L] COG4584 Transposase and inactivated derivatives gene gene3627 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3662 CH60_3663 CH60_3663 CH60_3663 4050318 4051097 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene3628 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3663 CH60_3664 CH60_3664 CH60_3664 4051212 4051400 - hypothetical protein conserved hypothetical protein gene gene3629 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3664 CH60_3665 CH60_3665 CH60_3665 4051437 4051823 - mutator mutT family protein mutt: mutator mutT family protein~[LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene3630 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3665 CH60_3666 CH60_3666 secA secA 4052118 4054832 - preprotein translocase%2C SecA subunit secA: preprotein translocase%2C SecA subunit~[U] COG0653 Preprotein translocase subunit SecA (ATPase%2C RNA helicase) gene gene3631 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3666 CH60_3667 CH60_3667 CH60_3667 4054910 4055443 - secretion monitor family protein gene gene3632 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3667 CH60_3668 CH60_3668 CH60_3668 4055472 4055996 + hypothetical protein conserved hypothetical protein~[S] COG4701 Uncharacterized protein conserved in bacteria gene gene3633 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3668 CH60_3669 CH60_3669 lpxC lpxC 4056163 4057083 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase~[M] COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase gene gene3634 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3669 CH60_367 CH60_367 CH60_367 379250 379813 - recX family protein [R] COG2137 Uncharacterized protein conserved in bacteria gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_367 CH60_3670 CH60_3670 ftsZ ftsZ 4057183 4058334 - cell division protein FtsZ ftsZ: cell division protein FtsZ~[D] COG0206 Cell division GTPase gene gene3635 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3670 CH60_3671 CH60_3671 ftsA ftsA 4058407 4059663 - cell division protein FtsA ftsA: cell division protein FtsA~[D] COG0849 Actin-like ATPase involved in cell division gene gene3636 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3671 CH60_3672 CH60_3672 ftsQ ftsQ 4059690 4060517 - cell division protein FtsQ [M] COG1589 Cell division septal protein gene gene3637 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3672 CH60_3673 CH60_3673 CH60_3673 4060519 4061439 - D-alanine--D-alanine ligase family protein D_ala_D_alaTIGR: D-alanine--D-alanine ligase family protein~[M] COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes gene gene3638 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3673 CH60_3674 CH60_3674 murC murC 4061432 4062907 - UDP-N-acetylmuramate--L-alanine ligase murC: UDP-N-acetylmuramate--L-alanine ligase~[M] COG0773 UDP-N-acetylmuramate-alanine ligase gene gene3639 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3674 CH60_3675 CH60_3675 murG murG 4063045 4064115 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase~[M] COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase gene gene3640 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3675 CH60_3676 CH60_3676 ftsW ftsW 4064112 4065314 - cell division protein FtsW ftsW: cell division protein FtsW~[D] COG0772 Bacterial cell division membrane protein gene gene3641 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3676 CH60_3677 CH60_3677 murD murD 4065314 4066630 - UDP-N-acetylmuramoylalanine--D-glutamate ligase murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase~[M] COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase gene gene3642 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3677 CH60_3678 CH60_3678 mraY mraY 4066633 4067715 - phospho-N-acetylmuramoyl-pentapeptide-transferase mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase~[M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase gene gene3643 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3678 CH60_3679 CH60_3679 murF murF 4067709 4069085 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein~[M] COG0770 UDP-N-acetylmuramyl pentapeptide synthase gene gene3644 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3679 CH60_368 CH60_368 recA recA 379951 381021 - protein RecA tigrfam_recA: protein RecA~[L] COG0468 RecA/RadA recombinase gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_368 CH60_3680 CH60_3680 murE murE 4069082 4070569 - UDP-N-acetylmuramyl-tripeptide synthetase family protein murE: UDP-N-acetylmuramyl-tripeptide synthetase family protein~[M] COG0769 UDP-N-acetylmuramyl tripeptide synthase gene gene3645 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3680 CH60_3681 CH60_3681 CH60_3681 4070556 4072319 - penicillin binding transpeptidase domain protein [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2 gene gene3646 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3681 CH60_3682 CH60_3682 ftsL ftsL 4072385 4072702 - cell division protein FtsL ftsL_broad: cell division protein FtsL~[D] COG3116 Cell division protein gene gene3647 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3682 CH60_3683 CH60_3683 rsmH rsmH 4072699 4073661 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase [M] COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis gene gene3648 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3683 CH60_3684 CH60_3684 CH60_3684 4073664 4074122 - mraZ family protein [S] COG2001 Uncharacterized protein conserved in bacteria gene gene3649 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3684 CH60_3685 CH60_3685 CH60_3685 4075224 4075664 + hypothetical protein conserved hypothetical protein gene gene3650 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3685 CH60_3686 CH60_3686 fruR fruR 4075795 4076805 - fructose repressor [K] COG1609 Transcriptional regulators gene gene3651 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3686 CH60_3687 CH60_3687 CH60_3687 4077310 4077768 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene3652 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3687 CH60_3688 CH60_3688 ilvN ilvN 4077967 4078461 - acetolactate synthase acolac_sm: acetolactate synthase%2C small subunit~[E] COG0440 Acetolactate synthase%2C small (regulatory) subunit gene gene3653 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3688 CH60_3689 CH60_3689 ilvB ilvB 4078464 4080191 - acetolactate synthase%2C large subunit%2C biosynthetic type acolac_lg: acetolactate synthase%2C large subunit%2C biosynthetic type~[EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase%2C pyruvate dehydrogenase (cytochrome)%2C glyoxylate carboligase%2C phosphonopyruvate decarboxylase] gene gene3654 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3689 CH60_369 CH60_369 ygaD ygaD 381136 381624 - protein YgaD [R] COG1546 Uncharacterized protein (competence- and mitomycin-induced) gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_369 CH60_3690 CH60_3690 CH60_3690 4080651 4082456 - AMP-binding enzyme family protein [I] COG1022 Long-chain acyl-CoA synthetases (AMP-forming) gene gene3655 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3690 CH60_3691 CH60_3691 CH60_3691 4083005 4083961 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene3656 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3691 CH60_3692 CH60_3692 CH60_3692 4084639 4084854 + hypothetical protein conserved hypothetical protein gene gene3657 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3692 CH60_3693 CH60_3693 CH60_3693 4085283 4085741 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene3658 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3693 CH60_3694 CH60_3694 CH60_3694 4085858 4087231 - peptidase Do family protein degP_htrA_DO: peptidase Do family protein~[O] COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C contain C-terminal PDZ domain gene gene3659 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3694 CH60_3695 CH60_3695 CH60_3695 4087502 4087906 - hypothetical protein conserved hypothetical protein~[S] COG3105 Uncharacterized protein conserved in bacteria gene gene3660 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3695 CH60_3696 CH60_3696 CH60_3696 4088130 4089257 + AFG1-like ATPase family protein [R] COG1485 Predicted ATPase gene gene3661 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3696 CH60_3697 CH60_3697 rplM rplM 4089571 4089999 + ribosomal protein L13 rplM_bact: ribosomal protein L13~[J] COG0102 Ribosomal protein L13 gene gene3662 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3697 CH60_3698 CH60_3698 rpsI rpsI 4090014 4090406 + 30S ribosomal protein S9 [J] COG0103 Ribosomal protein S9 gene gene3663 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3698 CH60_3699 CH60_3699 CH60_3699 4090780 4091421 + putative stringent starvation protein A [O] COG0625 Glutathione S-transferase gene gene3664 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3699 CH60_37 CH60_37 CH60_37 46216 46695 - F5/8 type C domain protein gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_37 CH60_370 CH60_370 CH60_370 381941 383281 + major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_370 CH60_3700 CH60_3700 CH60_3700 4091427 4091942 + stringent starvation B family protein [R] COG2969 Stringent starvation protein B gene gene3665 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3700 CH60_3701 CH60_3701 CH60_3701 4092095 4092580 - putative exported protein gene gene3666 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3701 CH60_3702 CH60_3702 CH60_3702 4093021 4094439 - glutamate synthase%2C small subunit domain protein gltD_gamma_fam: glutamate synthase%2C small subunit domain protein~[ER] COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases gene gene3667 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3702 CH60_3703 CH60_3703 CH60_3703 4094449 4098906 - glutamine amidotransferases class-II family protein [E] COG0070 Glutamate synthase domain 3 gene gene3668 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3703 CH60_3704 CH60_3704 CH60_3704 4099729 4100652 + radical SAM superfamily protein [R] COG1242 Predicted Fe-S oxidoreductase gene gene3669 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3704 CH60_3705 CH60_3705 CH60_3705 4100916 4103252 + sensory box protein [T] COG0642 Signal transduction histidine kinase gene gene3670 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3705 CH60_3706 CH60_3706 CH60_3706 4103494 4104147 + DJ-1/PfpI family protein [Q] COG3155 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis gene gene3671 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3706 CH60_3707 CH60_3707 mtgA mtgA 4104144 4104869 + monofunctional biosynthetic peptidoglycan transglycosylase mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase~[M] COG0744 Membrane carboxypeptidase (penicillin-binding protein) gene gene3672 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3707 CH60_3708 CH60_3708 CH60_3708 4105076 4105651 - BON domain protein [R] COG2823 Predicted periplasmic or secreted lipoprotein gene gene3673 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3708 CH60_3709 CH60_3709 CH60_3709 4105662 4106252 - SIS domain protein [G] COG0279 Phosphoheptose isomerase gene gene3674 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3709 CH60_371 CH60_371 CH60_371 383529 384473 + transcriptional regulator%2C putative [K] COG2390 Transcriptional regulator%2C contains sigma factor-related N-terminal domain gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_371 CH60_3710 CH60_3710 CH60_3710 4106523 4106876 - hypothetical protein conserved hypothetical protein~[L] COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase gene gene3675 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3710 CH60_3711 CH60_3711 CH60_3711 4106960 4108933 - lppC lipofamily protein [R] COG3107 Putative lipoprotein gene gene3676 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3711 CH60_3712 CH60_3712 rsmI rsmI 4108996 4109895 + 16S rRNA (cytidine(1402)-2'-O)-methyltransferase [R] COG0313 Predicted methyltransferases gene gene3677 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3712 CH60_3713 CH60_3713 CH60_3713 4110832 4111536 - pirin family protein [R] COG1741 Pirin-related protein gene gene3678 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3713 CH60_3714 CH60_3714 CH60_3714 4111798 4112691 + bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene3679 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3714 CH60_3715 CH60_3715 CH60_3715 4112822 4113757 - hypothetical protein glutathione S-transferase%2C N-terminal domain protein~[O] COG0435 Predicted glutathione S-transferase gene gene3680 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3715 CH60_3716 CH60_3716 CH60_3716 4113773 4114360 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene3681 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3716 CH60_3717 CH60_3717 CH60_3717 4114339 4114551 - putative transposition helper domain protein [L] COG1484 DNA replication protein gene gene3682 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3717 CH60_3718 CH60_3718 CH60_3718 4114619 4115572 - helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene3683 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3718 CH60_3719 CH60_3719 CH60_3719 4115599 4116138 - tatD related DNase family protein [L] COG0084 Mg-dependent DNase gene gene3684 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3719 CH60_372 CH60_372 CH60_372 384695 386119 - hypothetical protein L-fucose isomerase%2C C-terminal domain protein~[G] COG2407 L-fucose isomerase and related proteins gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_372 CH60_3720 CH60_3720 tatC tatC 4116194 4116970 - twin arginine-targeting protein translocase TatC tatC: twin arginine-targeting protein translocase TatC~[U] COG0805 Sec-independent protein secretion pathway component TatC gene gene3685 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3720 CH60_3721 CH60_3721 tatB tatB 4116973 4117635 - twin arginine-targeting protein translocase TatB tatB: twin arginine-targeting protein translocase TatB~[U] COG1826 Sec-independent protein secretion pathway components gene gene3686 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3721 CH60_3722 CH60_3722 tatA tatA 4117639 4117905 - twin arginine-targeting translocase%2C TatA/E family protein tatAE: twin arginine-targeting translocase%2C TatA/E family protein~[U] COG1826 Sec-independent protein secretion pathway components gene gene3687 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3722 CH60_3723 CH60_3723 ubiB ubiB 4118085 4119716 - 2-polyprenylphenol 6-hydroxylase ubiB: 2-polyprenylphenol 6-hydroxylase~[R] COG0661 Predicted unusual protein kinase gene gene3688 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3723 CH60_3724 CH60_3724 CH60_3724 4119716 4120366 - SCP-2 sterol transfer family protein [S] COG3165 Uncharacterized protein conserved in bacteria gene gene3689 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3724 CH60_3725 CH60_3725 ubiE ubiE 4120380 4121135 - ubiquinone/menaquinone biosynthesis methyltransferase ubiE [H] COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis gene gene3690 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3725 CH60_3726 CH60_3726 CH60_3726 4121227 4122732 - rmuC family protein [S] COG1322 Uncharacterized protein conserved in bacteria gene gene3691 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3726 CH60_3727 CH60_3727 CH60_3727 4122940 4123470 - hypothetical protein conserved hypothetical protein~[S] COG0586 Uncharacterized membrane-associated protein gene gene3692 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3727 CH60_3728 CH60_3728 CH60_3728 4123742 4125553 - carbon starvation CstA family protein [T] COG1966 Carbon starvation protein%2C predicted membrane protein gene gene3693 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3728 CH60_3729 CH60_3729 CH60_3729 4125917 4126741 - tyrosine phosphatase family protein [T] COG2365 Protein tyrosine/serine phosphatase gene gene3694 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3729 CH60_373 CH60_373 CH60_373 386140 387627 - hypothetical protein FGGY family of carbohydrate kinase%2C N-terminal domain protein~[C] COG0554 Glycerol kinase gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_373 CH60_3730 CH60_3730 udp udp 4126868 4127629 - uridine phosphorylase uridine-psphlse: uridine phosphorylase~[F] COG2820 Uridine phosphorylase gene gene3695 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3730 CH60_3731 CH60_3731 CH60_3731 4128057 4128929 + chlorophyllase enzyme family protein [Q] COG0412 Dienelactone hydrolase and related enzymes gene gene3696 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3731 CH60_3732 CH60_3732 metE metE 4128984 4131260 - 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase~[E] COG0620 Methionine synthase II (cobalamin-independent) gene gene3697 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3732 CH60_3733 CH60_3733 yedA yedA 4132207 4133106 - carboxylate/amino acid/amine transporter family protein 2A78: carboxylate/amino acid/amine transporter family protein~[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene3699 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3733 CH60_3734 CH60_3734 CH60_3734 4131366 4132319 + bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene3698 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3734 CH60_3735 CH60_3735 CH60_3735 4133459 4134415 - membrane transport family protein [R] COG0679 Predicted permeases gene gene3700 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3735 CH60_3736 CH60_3736 CH60_3736 4134516 4135265 - glycerophosphoryl diester phosphodiesterase family protein [C] COG0584 Glycerophosphoryl diester phosphodiesterase gene gene3701 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3736 CH60_3737 CH60_3737 ugpC ugpC 4135262 4136335 - sn-glycerol-3-phosphate import ATP-binding protein UgpC [G] COG3839 ABC-type sugar transport systems%2C ATPase components gene gene3702 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3737 CH60_3738 CH60_3738 CH60_3738 4136342 4137187 - binding--dependent transport system inner membrane component family protein [G] COG0395 ABC-type sugar transport system%2C permease component gene gene3703 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3738 CH60_3739 CH60_3739 CH60_3739 4137184 4138071 - binding--dependent transport system inner membrane component family protein [G] COG1175 ABC-type sugar transport systems%2C permease components gene gene3704 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3739 CH60_374 CH60_374 CH60_374 387630 388574 - hypothetical protein transketolase%2C C-terminal domain protein~[G] COG3958 Transketolase%2C C-terminal subunit gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_374 CH60_3740 CH60_3740 CH60_3740 4138369 4139688 - bacterial extracellular solute-binding family protein [G] COG1653 ABC-type sugar transport system%2C periplasmic component gene gene3705 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3740 CH60_3741 CH60_3741 CH60_3741 4140243 4140734 + CS1 type fimbrial major subunit gene gene3706 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3741 CH60_3742 CH60_3742 CH60_3742 4141001 4143337 + hypothetical protein conserved hypothetical protein gene gene3707 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3742 CH60_3743 CH60_3743 CH60_3743 4143355 4144041 + hypothetical protein pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein gene gene3708 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3743 CH60_3744 CH60_3744 CH60_3744 4144013 4144660 + hypothetical protein conserved hypothetical protein gene gene3709 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3744 CH60_3745 CH60_3745 CH60_3745 4144722 4145240 + putative exported protein gene gene3710 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3745 CH60_3746 CH60_3746 CH60_3746 4145290 4146396 + putative exported protein gene gene3711 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3746 CH60_3747 CH60_3747 CH60_3747 4146511 4146969 - hypothetical protein conserved hypothetical protein gene gene3712 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3747 CH60_3748 CH60_3748 livF livF 4147200 4147901 - high-affinity branched-chain amino acid transport ATP-binding protein LivF [E] COG0410 ABC-type branched-chain amino acid transport systems%2C ATPase component gene gene3713 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3748 CH60_3749 CH60_3749 CH60_3749 4147946 4148713 - ABC transporter family protein [E] COG0411 ABC-type branched-chain amino acid transport systems%2C ATPase component gene gene3714 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3749 CH60_375 CH60_375 CH60_375 388567 389397 - hypothetical protein thiamine pyrophosphate enzyme%2C C-terminal TPP binding domain protein~[G] COG3959 Transketolase%2C N-terminal subunit gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_375 CH60_3750 CH60_3750 CH60_3750 4148710 4149996 - branched-chain amino acid transport system / permease component family protein [E] COG4177 ABC-type branched-chain amino acid transport system%2C permease component gene gene3715 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3750 CH60_3751 CH60_3751 CH60_3751 4149993 4150919 - branched-chain amino acid transport system / permease component family protein [E] COG0559 Branched-chain amino acid ABC-type transport system%2C permease components gene gene3716 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3751 CH60_3752 CH60_3752 CH60_3752 4151100 4152215 - receptor ligand binding region family protein [E] COG0683 ABC-type branched-chain amino acid transport systems%2C periplasmic component gene gene3717 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3752 CH60_3753 CH60_3753 CH60_3753 4152637 4153029 + acetyltransferase domain protein gene gene3718 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3753 CH60_3754 CH60_3754 CH60_3754 4153275 4153733 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene3719 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3754 CH60_3755 CH60_3755 rpoH rpoH 4153947 4154804 - alternative sigma factor RpoH rpoH_proteo: alternative sigma factor RpoH~[K] COG0568 DNA-directed RNA polymerase%2C sigma subunit (sigma70/sigma32) gene gene3720 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3755 CH60_3756 CH60_3756 ftsX ftsX 4155115 4156068 - putative protein insertion permease FtsX ftsX: putative protein insertion permease FtsX~[D] COG2177 Cell division protein gene gene3721 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3756 CH60_3757 CH60_3757 ftsE ftsE 4156058 4156726 - cell division ATP-binding protein FtsE ftsE: cell division ATP-binding protein FtsE~[D] COG2884 Predicted ATPase involved in cell division gene gene3722 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3757 CH60_3758 CH60_3758 ftsY ftsY 4156732 4158357 - signal recognition particle-docking protein FtsY ftsY: signal recognition particle-docking protein FtsY~[U] COG0552 Signal recognition particle GTPase gene gene3723 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3758 CH60_3759 CH60_3759 rsmD rsmD 4158639 4159301 + 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD [L] COG0742 N6-adenine-specific methylase gene gene3724 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3759 CH60_376 CH60_376 CH60_376 389648 390790 - branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_376 CH60_3760 CH60_3760 CH60_3760 4159291 4159563 + hypothetical protein conserved hypothetical protein~[S] COG3776 Predicted membrane protein gene gene3725 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3760 CH60_3761 CH60_3761 CH60_3761 4159750 4160169 - hypothetical protein conserved hypothetical protein gene gene3726 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3761 CH60_3762 CH60_3762 CH60_3762 4160381 4160701 - hypothetical protein conserved hypothetical protein~[S] COG4517 Uncharacterized protein conserved in bacteria gene gene3727 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3762 CH60_3763 CH60_3763 CH60_3763 4160991 4161617 + yhhN-like family protein [S] COG3714 Predicted membrane protein gene gene3728 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3763 CH60_3764 CH60_3764 cadA cadA 4162031 4164397 + cadmium-translocating P-type ATPase ATPase-IB2_Cd: cadmium-translocating P-type ATPase~[P] COG2217 Cation transport ATPase gene gene3729 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3764 CH60_3765 CH60_3765 CH60_3765 4164497 4164751 - sulfurtransferase TusA family protein [O] COG0425 Predicted redox protein%2C regulator of disulfide bond formation gene gene3730 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3765 CH60_3766 CH60_3766 CH60_3766 4165035 4165703 + hypothetical protein conserved hypothetical integral membrane family protein~[S] COG1738 Uncharacterized conserved protein gene gene3731 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3766 CH60_3767 CH60_3767 CH60_3767 4165917 4166360 + putative lipoprotein gene gene3732 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3767 CH60_3768 CH60_3768 glpC glpC 4166522 4167688 - glycerol-3-phosphate dehydrogenase%2C anaerobic%2C C subunit glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase%2C anaerobic%2C C subunit~[C] COG0247 Fe-S oxidoreductase gene gene3733 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3768 CH60_3769 CH60_3769 glpB glpB 4167814 4169088 - glycerol-3-phosphate dehydrogenase%2C anaerobic%2C B subunit glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase%2C anaerobic%2C B subunit~[E] COG3075 Anaerobic glycerol-3-phosphate dehydrogenase gene gene3734 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3769 CH60_377 CH60_377 ccmA ccmA 390790 392313 - heme ABC exporter%2C ATP-binding protein CcmA ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_377 CH60_3770 CH60_3770 glpA glpA 4169078 4170733 - glycerol-3-phosphate dehydrogenase%2C anaerobic%2C A subunit glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase%2C anaerobic%2C A subunit~[C] COG0578 Glycerol-3-phosphate dehydrogenase gene gene3735 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3770 CH60_3771 CH60_3771 CH60_3771 4171358 4172473 + glycerophosphoryl diester phosphodiesterase family protein [C] COG0584 Glycerophosphoryl diester phosphodiesterase gene gene3736 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3771 CH60_3772 CH60_3772 CH60_3772 4172547 4173746 - viral enhancin family protein gene gene3737 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3772 CH60_3773 CH60_3773 CH60_3773 4174023 4174832 - HAD hydrolase%2C IIB family protein HAD-SF-IIB: HAD hydrolase%2C IIB family protein~[R] COG0561 Predicted hydrolases of the HAD superfamily gene gene3738 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3773 CH60_3774 CH60_3774 CH60_3774 4174867 4175862 - prolyl oligopeptidase family protein [I] COG2267 Lysophospholipase gene gene3739 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3774 CH60_3775 CH60_3775 rhtB rhtB 4176076 4176696 + homoserine/homoserine lactone efflux protein [E] COG1280 Putative threonine efflux protein gene gene3740 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3775 CH60_3776 CH60_3776 CH60_3776 4176747 4177367 - homoserine/Threonine efflux family protein 2A76: homoserine/Threonine efflux family protein~[E] COG1280 Putative threonine efflux protein gene gene3741 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3776 CH60_3777 CH60_3777 recQ recQ 4177474 4179306 - ATP-dependent DNA helicase RecQ recQ: ATP-dependent DNA helicase RecQ~[L] COG0514 Superfamily II DNA helicase gene gene3742 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3777 CH60_3778 CH60_3778 pldA pldA 4179384 4180262 - phospholipase A1 [M] COG2829 Outer membrane phospholipase A gene gene3743 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3778 CH60_3779 CH60_3779 CH60_3779 4180484 4180954 + hypothetical protein conserved hypothetical protein~[Q] COG2050 Uncharacterized protein%2C possibly involved in aromatic compounds catabolism gene gene3744 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3779 CH60_378 CH60_378 CH60_378 392313 392930 - hypothetical protein conserved hypothetical protein~[R] COG5618 Predicted periplasmic lipoprotein gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_378 CH60_3780 CH60_3780 CH60_3780 4181041 4181931 + eamA-like transporter family protein [R] COG2962 Predicted permeases gene gene3745 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3780 CH60_3781 CH60_3781 corA corA 4182029 4182979 - magnesium and cobalt transport protein CorA corA: magnesium and cobalt transport protein CorA~[P] COG0598 Mg2+ and Co2+ transporters gene gene3746 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3781 CH60_3782 CH60_3782 CH60_3782 4183628 4184458 - nitronate monooxygenase family protein [R] COG5564 Predicted TIM-barrel enzyme%2C possibly a dioxygenase gene gene3747 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3782 CH60_3783 CH60_3783 CH60_3783 4184484 4185701 - hypothetical protein conserved hypothetical protein~[S] COG5441 Uncharacterized conserved protein gene gene3748 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3783 CH60_3784 CH60_3784 CH60_3784 4186129 4186815 + bacterial regulatory s%2C tetR family protein [K] COG1309 Transcriptional regulator gene gene3749 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3784 CH60_3785 CH60_3785 uvrD uvrD 4186929 4189091 - DNA helicase II uvrD: DNA helicase II~[L] COG0210 Superfamily I DNA and RNA helicases gene gene3750 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3785 CH60_3786 CH60_3786 CH60_3786 4189193 4189909 - HAD hydrolase%2C IA%2C variant 1 family protein HAD-SF-IA-v1: HAD hydrolase%2C IA%2C variant 1 family protein~[R] COG1011 Predicted hydrolase (HAD superfamily) gene gene3751 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3786 CH60_3787 CH60_3787 xerC xerC 4189909 4190820 - tyrosine recombinase XerC recomb_XerC: tyrosine recombinase XerC~[L] COG4973 Site-specific recombinase XerC gene gene3752 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3787 CH60_3788 CH60_3788 CH60_3788 4190817 4191521 - hypothetical protein conserved hypothetical protein~[S] COG3159 Uncharacterized protein conserved in bacteria gene gene3753 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3788 CH60_3789 CH60_3789 dapF dapF 4191586 4192410 - diaminopimelate epimerase dapF: diaminopimelate epimerase~[E] COG0253 Diaminopimelate epimerase gene gene3754 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3789 CH60_379 CH60_379 CH60_379 393023 393964 - periplasmic binding domain protein [G] COG1879 ABC-type sugar transport system%2C periplasmic component gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_379 CH60_3790 CH60_3790 CH60_3790 4192594 4192782 - prokaryotic lipo-attachment site family protein [N] COG5567 Predicted small periplasmic lipoprotein gene gene3755 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3790 CH60_3791 CH60_3791 cyaY cyaY 4192934 4193254 + iron donor protein CyaY feS_CyaY: iron donor protein CyaY~[P] COG1965 Protein implicated in iron transport%2C frataxin homolog gene gene3756 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3791 CH60_3792 CH60_3792 CH60_3792 4193498 4196050 - adenylate cyclase%2C class-I family protein [F] COG3072 Adenylate cyclase gene gene3757 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3792 CH60_3793 CH60_3793 hemC hemC 4196544 4197485 + hydroxymethylbilane synthase hemC: hydroxymethylbilane synthase~[H] COG0181 Porphobilinogen deaminase gene gene3758 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3793 CH60_3794 CH60_3794 CH60_3794 4197482 4198231 + uroporphyrinogen-III synthase HemD family protein [H] COG1587 Uroporphyrinogen-III synthase gene gene3759 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3794 CH60_3795 CH60_3795 CH60_3795 4198262 4199386 + hemX family protein [H] COG2959 Uncharacterized enzyme of heme biosynthesis gene gene3760 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3795 CH60_3796 CH60_3796 CH60_3796 4199389 4200609 + hemY family protein [H] COG3071 Uncharacterized enzyme of heme biosynthesis gene gene3761 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3796 CH60_3797 CH60_3797 CH60_3797 4200802 4201260 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene3762 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3797 CH60_3798 CH60_3798 CH60_3798 4202127 4202203 - tRNA-Pro tRNA gene3763 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3798 CH60_3799 CH60_3799 CH60_3799 4202279 4202365 - tRNA-Leu tRNA gene3764 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3799 CH60_38 CH60_38 pelY pelY 46820 48538 - periplasmic pectate lyase gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_38 CH60_380 CH60_380 katG katG 394500 396713 + catalase/peroxidase HPI cat_per_HPI: catalase/peroxidase HPI~[P] COG0376 Catalase (peroxidase I) gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_380 CH60_3801 CH60_3801 CH60_3801 4202382 4202457 - tRNA-His tRNA gene3765 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3801 CH60_3802 CH60_3802 CH60_3802 4202541 4202617 - tRNA-Arg tRNA gene3766 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3802 CH60_3803 CH60_3803 CH60_3803 4202766 4204157 - amino acid permease family protein [E] COG1113 Gamma-aminobutyrate permease and related permeases gene gene3767 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3803 CH60_3804 CH60_3804 CH60_3804 4204681 4205421 - glycosyltransferase%2C WecB/TagA/CpsF family protein wecG_tagA_cpsF: glycosyltransferase%2C WecB/TagA/CpsF family protein~[M] COG1922 Teichoic acid biosynthesis proteins gene gene3768 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3804 CH60_3805 CH60_3805 CH60_3805 4205430 4206794 - wzyE family protein gene gene3769 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3805 CH60_3806 CH60_3806 CH60_3806 4206791 4207876 - 4-alpha-L-fucosyltransferase glycosyl transferase group 56 family protein gene gene3770 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3806 CH60_3807 CH60_3807 CH60_3807 4207899 4209155 - polysaccharide biosynthesis family protein [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid gene gene3771 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3807 CH60_3808 CH60_3808 wecE wecE 4209157 4210287 - TDP-4-keto-6-deoxy-D-glucose transaminase family protein ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase family protein~[M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis gene gene3772 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3808 CH60_3809 CH60_3809 wecD wecD 4210289 4211026 - TDP-D-fucosamine acetyltransferase wecD_rffC: TDP-D-fucosamine acetyltransferase~[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases gene gene3773 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3809 CH60_381 CH60_381 cybC cybC 396790 397173 + soluble cytochrome b562 [C] COG3783 Soluble cytochrome b562 gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_381 CH60_3810 CH60_3810 rfbA rfbA 4211004 4211885 - glucose-1-phosphate thymidylyltransferase rmlA: glucose-1-phosphate thymidylyltransferase~[M] COG1209 dTDP-glucose pyrophosphorylase gene gene3774 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3810 CH60_3811 CH60_3811 rfbB rfbB 4212180 4213247 - dTDP-glucose 4%2C6-dehydratase dTDP_gluc_dehyt: dTDP-glucose 4%2C6-dehydratase~[M] COG1088 dTDP-D-glucose 4%2C6-dehydratase gene gene3775 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3811 CH60_3812 CH60_3812 CH60_3812 4213244 4214506 - nucleotide sugar dehydrogenase family protein NDP-sugDHase: nucleotide sugar dehydrogenase family protein~[M] COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase gene gene3776 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3812 CH60_3813 CH60_3813 CH60_3813 4214503 4215633 - UDP-N-acetylglucosamine 2-epimerase wecB: UDP-N-acetylglucosamine 2-epimerase~[M] COG0381 UDP-N-acetylglucosamine 2-epimerase gene gene3777 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3813 CH60_3814 CH60_3814 CH60_3814 4215982 4217043 - chain length determinant family protein [M] COG3765 Chain length determinant protein gene gene3778 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3814 CH60_3815 CH60_3815 wecA wecA 4217079 4218176 - undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase ECA_wecA: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase~[M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase gene gene3779 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3815 CH60_3816 CH60_3816 rho rho 4218711 4219970 - Transcription termination factor rho: transcription termination factor Rho~[K] COG1158 Transcription termination factor gene gene3780 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3816 CH60_3817 CH60_3817 trxA trxA 4220450 4220776 - thioredoxin thioredoxin: thioredoxin~[OC] COG0526 Thiol-disulfide isomerase and thioredoxins gene gene3781 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3817 CH60_3818 CH60_3818 CH60_3818 4220895 4222181 + DEAD/DEAH box helicase family protein [LKJ] COG0513 Superfamily II DNA and RNA helicases gene gene3782 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3818 CH60_3819 CH60_3819 CH60_3819 4222188 4223681 + ppx/GppA phosphatase family protein [FP] COG0248 Exopolyphosphatase gene gene3783 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3819 CH60_382 CH60_382 CH60_382 397321 397851 + prokaryotic cytochrome b561 family protein [C] COG3038 Cytochrome B561 gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_382 CH60_3820 CH60_3820 rep rep 4223830 4225851 - ATP-dependent DNA helicase Rep rep: ATP-dependent DNA helicase Rep~[L] COG0210 Superfamily I DNA and RNA helicases gene gene3784 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3820 CH60_3821 CH60_3821 CH60_3821 4226055 4226336 + PPIC-type PPIASE domain protein [O] COG0760 Parvulin-like peptidyl-prolyl isomerase gene gene3785 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3821 CH60_3822 CH60_3822 CH60_3822 4226575 4227366 + glutamine cyclotransferase family protein [O] COG3823 Glutamine cyclotransferase gene gene3786 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3822 CH60_3823 CH60_3823 CH60_3823 4228158 4228688 + putative fimbrial protein [NU] COG3539 P pilus assembly protein%2C pilin FimA gene gene3787 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3823 CH60_3824 CH60_3824 CH60_3824 4228752 4229483 + hypothetical protein pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD gene gene3788 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3824 CH60_3825 CH60_3825 CH60_3825 4229511 4232138 + hypothetical protein papC N-terminal domain protein~[NU] COG3188 P pilus assembly protein%2C porin PapC gene gene3789 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3825 CH60_3826 CH60_3826 CH60_3826 4232154 4233521 + fimbrial family protein gene gene3790 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3826 CH60_3827 CH60_3827 CH60_3827 4233487 4234305 + hypothetical protein pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD gene gene3791 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3827 CH60_3828 CH60_3828 imm imm 4234940 4235197 - colicin-E9 immunity protein gene gene3792 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3828 CH60_3829 CH60_3829 CH60_3829 4235199 4235450 - DNase/tRNase domain of colicin-like bacteriocin family protein gene gene3793 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3829 CH60_383 CH60_383 CH60_383 398108 398818 - nitrate reductase delta subunit [R] COG3381 Uncharacterized component of anaerobic dehydrogenases gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_383 CH60_3830 CH60_3830 CH60_3830 4235703 4235966 - hypothetical protein conserved hypothetical protein gene gene3794 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3830 CH60_3831 CH60_3831 CH60_3831 4235966 4237408 - S-type Pyocin family protein gene gene3795 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3831 CH60_3832 CH60_3832 CH60_3832 4237604 4237804 - colicin/pyocin immunity family domain protein gene gene3796 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3832 CH60_3833 CH60_3833 ilvC ilvC 4237985 4239463 - ketol-acid reductoisomerase ilvC: ketol-acid reductoisomerase~[EH] COG0059 Ketol-acid reductoisomerase gene gene3797 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3833 CH60_3834 CH60_3834 CH60_3834 4239749 4240630 + bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene3798 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3834 CH60_3835 CH60_3835 CH60_3835 4240685 4240894 - hypothetical protein conserved hypothetical protein gene gene3799 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3835 CH60_3836 CH60_3836 CH60_3836 4241542 4242420 + hypothetical protein conserved hypothetical family protein gene gene3800 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3836 CH60_3837 CH60_3837 CH60_3837 4242404 4242865 + hypothetical protein conserved hypothetical protein gene gene3801 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3837 CH60_3838 CH60_3838 CH60_3838 4242945 4243406 + hypothetical protein conserved hypothetical protein gene gene3802 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3838 CH60_3839 CH60_3839 CH60_3839 4243486 4243950 + hypothetical protein conserved hypothetical protein gene gene3803 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3839 CH60_384 CH60_384 CH60_384 398964 399824 - DMSO reductase anchor subunit family protein [R] COG3302 DMSO reductase anchor subunit gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_384 CH60_3840 CH60_3840 ilvA ilvA 4244081 4245625 - threonine ammonia-lyase%2C biosynthetic ilvA_2Cterm: threonine ammonia-lyase%2C biosynthetic~[E] COG1171 Threonine dehydratase gene gene3804 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3840 CH60_3841 CH60_3841 ilvD ilvD 4245631 4247481 - dihydroxy-acid dehydratase ilvD: dihydroxy-acid dehydratase~[EG] COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase gene gene3805 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3841 CH60_3842 CH60_3842 ilvE ilvE 4247792 4248718 - branched-chain amino acid aminotransferase ilvE_I: branched-chain amino acid aminotransferase~[EH] COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase gene gene3806 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3842 CH60_3843 CH60_3843 CH60_3843 4248741 4248998 - ACT domain protein [S] COG3978 Acetolactate synthase (isozyme II)%2C small (regulatory) subunit gene gene3807 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3843 CH60_3844 CH60_3844 ilvB ilvB 4248995 4250641 - acetolactate synthase%2C large subunit%2C biosynthetic type acolac_lg: acetolactate synthase%2C large subunit%2C biosynthetic type~[EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase%2C pyruvate dehydrogenase (cytochrome)%2C glyoxylate carboligase%2C phosphonopyruvate decarboxylase] gene gene3808 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3844 CH60_3845 CH60_3845 CH60_3845 4251264 4252787 + sigma-54 interaction domain protein [O] COG0606 Predicted ATPase with chaperone activity gene gene3809 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3845 CH60_3846 CH60_3846 CH60_3846 4253044 4253382 - hypothetical protein conserved hypothetical protein~[S] COG3085 Uncharacterized protein conserved in bacteria gene gene3810 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3846 CH60_3847 CH60_3847 CH60_3847 4254369 4255361 - branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene3812 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3847 CH60_3848 CH60_3848 CH60_3848 4253501 4254382 + bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene3811 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3848 CH60_3849 CH60_3849 CH60_3849 4255361 4256359 - branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene3813 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3849 CH60_385 CH60_385 dmsB dmsB 399826 400443 - dimethylsulfoxide reductase%2C chain B DMSO_dmsB: dimethylsulfoxide reductase%2C chain B~[C] COG0437 Fe-S-cluster-containing hydrogenase components 1 gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_385 CH60_3850 CH60_3850 ccmA ccmA 4256392 4257873 - heme ABC exporter%2C ATP-binding protein CcmA ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene3814 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3850 CH60_3851 CH60_3851 ytfQ ytfQ 4257968 4258924 - ABC transporter periplasmic-binding protein ytfQ [G] COG1879 ABC-type sugar transport system%2C periplasmic component gene gene3815 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3851 CH60_3852 CH60_3852 CH60_3852 4259908 4259983 - tRNA-Trp tRNA gene3816 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3852 CH60_3853 CH60_3853 CH60_3853 4259992 4260068 - tRNA-Asp tRNA gene3817 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3853 CH60_3854 CH60_3854 CH60_3854 4260194 4260306 - 5S ribosomal RNA rRNA gene3818 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3854 CH60_3855 CH60_3855 CH60_3855 4260420 4263321 - 23S ribosomal RNA rRNA gene3819 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3855 CH60_3856 CH60_3856 CH60_3856 4263576 4263651 - tRNA-Glu tRNA gene3820 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3856 CH60_3857 CH60_3857 CH60_3857 4263794 4265320 - 16S ribosomal RNA rRNA gene3821 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3857 CH60_3859 CH60_3859 murI murI 4265785 4266648 - glutamate racemase glut_race: glutamate racemase~[M] COG0796 Glutamate racemase gene gene3822 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3859 CH60_386 CH60_386 dmsA dmsA 400455 402905 - anaerobic dimethyl sulfoxide reductase chain A [C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_386 CH60_3860 CH60_3860 btuB btuB 4266593 4268470 - TonB-dependent vitamin B12 receptor tonB-B12: TonB-dependent vitamin B12 receptor~[H] COG4206 Outer membrane cobalamin receptor protein gene gene3823 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3860 CH60_3861 CH60_3861 trmA trmA 4268950 4270053 + tRNA (uracil(54)-C(5))-methyltransferase trmA_only: tRNA (uracil(54)-C(5))-methyltransferase~[J] COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase gene gene3824 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3861 CH60_3862 CH60_3862 yijD yijD 4270187 4270594 - inner membrane protein yijD gene gene3825 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3862 CH60_3863 CH60_3863 fabR fabR 4270607 4271242 - HTH-type transcriptional repressor fabR [K] COG1309 Transcriptional regulator gene gene3826 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3863 CH60_3864 CH60_3864 CH60_3864 4272843 4273760 - bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene3828 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3864 CH60_3865 CH60_3865 CH60_3865 4271460 4272860 + pyridine nucleotide-disulfide oxidoreductase family protein [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase (E3) component%2C and related enzymes gene gene3827 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3865 CH60_3866 CH60_3866 CH60_3866 4273907 4274638 + hypothetical protein glutathione S-transferase%2C N-terminal domain protein~[O] COG0678 Peroxiredoxin gene gene3829 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3866 CH60_3867 CH60_3867 CH60_3867 4274733 4276196 + glucose inhibited division A family protein [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase (E3) component%2C and related enzymes gene gene3830 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3867 CH60_3868 CH60_3868 CH60_3868 4276312 4277115 - hypothetical protein tonB_Cterm: TonB family C-terminal domain protein~[M] COG0810 Periplasmic protein TonB%2C links inner and outer membranes gene gene3831 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3868 CH60_3869 CH60_3869 CH60_3869 4277180 4278508 - type I secretion membrane fusion%2C HlyD family protein type_I_hlyD: type I secretion membrane fusion%2C HlyD family protein~[M] COG0845 Membrane-fusion protein gene gene3832 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3869 CH60_387 CH60_387 araD araD 403368 404063 - L-ribulose-5-phosphate 4-epimerase araD: L-ribulose-5-phosphate 4-epimerase~[G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_387 CH60_3870 CH60_3870 CH60_3870 4278584 4280392 - type I secretion system ATPase family protein type_I_sec_PrtD: type I secretion system ATPase family protein~[R] COG4618 ABC-type protease/lipase transport system%2C ATPase and permease components gene gene3833 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3870 CH60_3871 CH60_3871 CH60_3871 4280558 4281175 - heme-binding A family protein gene gene3834 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3871 CH60_3872 CH60_3872 hasR hasR 4281397 4283889 - hasR protein [P] COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene3835 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3872 CH60_3873 CH60_3873 CH60_3873 4284200 4284325 + hypothetical protein conserved hypothetical protein gene gene3836 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3873 CH60_3874 CH60_3874 argH argH 4284488 4285861 - argininosuccinate lyase argH: argininosuccinate lyase~[E] COG0165 Argininosuccinate lyase gene gene3837 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3874 CH60_3875 CH60_3875 argB argB 4286028 4286801 - acetylglutamate kinase argB: acetylglutamate kinase~[E] COG0548 Acetylglutamate kinase gene gene3838 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3875 CH60_3876 CH60_3876 argC argC 4286970 4287965 - N-acetyl-gamma-glutamyl-phosphate reductase argC: N-acetyl-gamma-glutamyl-phosphate reductase~[E] COG0002 Acetylglutamate semialdehyde dehydrogenase gene gene3839 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3876 CH60_3877 CH60_3877 argE argE 4288216 4289379 + acetylornithine deacetylase acOrn-deacetyl: acetylornithine deacetylase~[E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases gene gene3840 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3877 CH60_3878 CH60_3878 CH60_3878 4289753 4292389 + phosphoenolpyruvate carboxylase family protein [C] COG2352 Phosphoenolpyruvate carboxylase gene gene3841 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3878 CH60_3879 CH60_3879 CH60_3879 4293131 4293583 + transposase family protein [L] COG2963 Transposase and inactivated derivatives gene gene3842 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3879 CH60_388 CH60_388 CH60_388 404766 405575 + deoR-like helix-turn-helix domain protein [KG] COG1349 Transcriptional regulators of sugar metabolism gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_388 CH60_3880 CH60_3880 CH60_3880 4294098 4294481 + integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene3843 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3880 CH60_3881 CH60_3881 mdfA mdfA 4294954 4296183 + multidrug transporter MdfA [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene3844 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3881 CH60_3882 CH60_3882 CH60_3882 4296332 4296535 - hypothetical protein gene gene3845 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3882 CH60_3883 CH60_3883 CH60_3883 4296656 4296814 + hypothetical protein conserved hypothetical protein gene gene3846 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3883 CH60_3884 CH60_3884 CH60_3884 4296893 4297474 + hypothetical protein conserved hypothetical protein gene gene3847 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3884 CH60_3885 CH60_3885 CH60_3885 4297488 4297820 - hypothetical protein conserved hypothetical protein gene gene3848 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3885 CH60_3886 CH60_3886 CH60_3886 4298109 4298573 + tn3 transposase DDE domain protein [L] COG4644 Transposase and inactivated derivatives%2C TnpA family gene gene3849 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3886 CH60_3887 CH60_3887 selB selB 4298580 4300533 - selenocysteine-specific translation elongation factor%3B50S ribosome-binding GTPase family protein pseudogene gene3850 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3887 CH60_3889 CH60_3889 selA selA 4300530 4301918 - L-seryl-tRNA(Sec) selenium transferase selA: L-seryl-tRNA(Sec) selenium transferase~[E] COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] gene gene3851 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3889 CH60_389 CH60_389 CH60_389 405736 406740 + periplasmic binding domain protein [G] COG1879 ABC-type sugar transport system%2C periplasmic component gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_389 CH60_3890 CH60_3890 fdhE fdhE 4302102 4303031 - formate dehydrogenase accessory protein FdhE fdhE: formate dehydrogenase accessory protein FdhE~[O] COG3058 Uncharacterized protein involved in formate dehydrogenase formation gene gene3852 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3890 CH60_3891 CH60_3891 CH60_3891 4303031 4303705 - formate dehydrogenase%2C gamma subunit formate-DH-gamm: formate dehydrogenase%2C gamma subunit~[C] COG2864 Cytochrome b subunit of formate dehydrogenase gene gene3853 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3891 CH60_3892 CH60_3892 fdxH fdxH 4303702 4304673 - formate dehydrogenase%2C beta subunit FDH-beta: formate dehydrogenase%2C beta subunit~[C] COG0437 Fe-S-cluster-containing hydrogenase components 1 gene gene3854 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3892 CH60_3893 CH60_3893 fdnG fdnG 4304686 4307097 - formate dehydrogenase-N alpha subunit formate-DH-alph: formate dehydrogenase-N alpha subunit~[C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing gene gene3855 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3893 CH60_3894 CH60_3894 CH60_3894 4307146 4307733 - molybdopterin oxidoreductase Fe4S4 domain protein [C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing gene gene3856 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3894 CH60_3895 CH60_3895 CH60_3895 4307930 4308754 + formate dehydrogenase family accessory protein FdhD fdhD_narQ: formate dehydrogenase family accessory protein FdhD~[C] COG1526 Uncharacterized protein required for formate dehydrogenase activity gene gene3857 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3895 CH60_3896 CH60_3896 CH60_3896 4309210 4309833 + iron/manganese superoxide dismutase%2C alpha-hairpin domain protein [P] COG0605 Superoxide dismutase gene gene3858 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3896 CH60_3897 CH60_3897 CH60_3897 4310177 4312126 + methyl-accepting chemotaxis (MCP) signaling domain protein [NT] COG0840 Methyl-accepting chemotaxis protein gene gene3859 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3897 CH60_3898 CH60_3898 CH60_3898 4312316 4312648 + hypothetical protein conserved hypothetical protein gene gene3860 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3898 CH60_3899 CH60_3899 CH60_3899 4312724 4312819 - hypothetical protein conserved hypothetical protein gene gene3861 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3899 CH60_39 CH60_39 kdgM kdgM 48784 49488 - oligogalacturonate-specific porin kdgM gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_39 CH60_390 CH60_390 CH60_390 406889 408403 + ABC transporter family protein [G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_390 CH60_3900 CH60_3900 CH60_3900 4313180 4313656 + electron transfer DM13 family protein gene gene3862 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3900 CH60_3901 CH60_3901 CH60_3901 4313825 4314181 - hypothetical protein conserved hypothetical protein gene gene3863 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3901 CH60_3902 CH60_3902 CH60_3902 4314229 4314351 - hypothetical protein gene gene3864 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3902 CH60_3903 CH60_3903 mtlR mtlR 4314430 4314984 - mannitol operon repressor [K] COG3722 Transcriptional regulator gene gene3865 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3903 CH60_3904 CH60_3904 CH60_3904 4315191 4316354 - mannitol dehydrogenase Rossmann domain protein [G] COG0246 Mannitol-1-phosphate/altronate dehydrogenases gene gene3866 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3904 CH60_3905 CH60_3905 mtlA mtlA 4316491 4318422 - PTS system mannitol-specific EIICBA component [G] COG2213 Phosphotransferase system%2C mannitol-specific IIBC component gene gene3867 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3905 CH60_3906 CH60_3906 CH60_3906 4319072 4319791 - hypothetical protein conserved hypothetical protein gene gene3868 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3906 CH60_3907 CH60_3907 glyS glyS 4320248 4322317 - glycine--tRNA ligase%2C beta subunit glyS: glycine--tRNA ligase%2C beta subunit~[J] COG0751 Glycyl-tRNA synthetase%2C beta subunit gene gene3869 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3907 CH60_3908 CH60_3908 glyQ glyQ 4322327 4323241 - glycyl-tRNA synthetase alpha subunit [J] COG0752 Glycyl-tRNA synthetase%2C alpha subunit gene gene3870 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3908 CH60_3909 CH60_3909 CH60_3909 4323372 4323506 + hypothetical protein gene gene3871 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3909 CH60_391 CH60_391 CH60_391 408396 409385 + branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_391 CH60_3910 CH60_3910 tag tag 4323575 4324141 + DNA-3-methyladenine glycosylase I family protein tag: DNA-3-methyladenine glycosylase I family protein~[L] COG2818 3-methyladenine DNA glycosylase gene gene3872 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3910 CH60_3911 CH60_3911 CH60_3911 4324138 4324593 + acetyltransferase family protein [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases gene gene3873 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3911 CH60_3912 CH60_3912 CH60_3912 4324951 4325610 + glycine zipper 2TM domain protein [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins gene gene3874 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3912 CH60_3913 CH60_3913 CH60_3913 4325741 4326385 - putative transcriptional regulator protein [K] COG2345 Predicted transcriptional regulator gene gene3875 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3913 CH60_3914 CH60_3914 CH60_3914 4326904 4327884 + D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain protein [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases gene gene3876 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3914 CH60_3915 CH60_3915 CH60_3915 4328154 4330217 + alpha amylase%2C catalytic domain protein [G] COG0366 Glycosidases gene gene3877 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3915 CH60_3916 CH60_3916 CH60_3916 4330632 4331075 + putative membrane protein gene gene3878 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3916 CH60_3917 CH60_3917 CH60_3917 4331530 4332795 + aminotransferase class I and II family protein [E] COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase gene gene3879 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3917 CH60_3918 CH60_3918 CH60_3918 4332908 4334566 - AspT/YidE/YbjL antiporter duplication domain protein yidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain protein~[R] COG2985 Predicted permease gene gene3880 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3918 CH60_3919 CH60_3919 CH60_3919 4334939 4335403 - hsp20/alpha crystallin family protein [O] COG0071 Molecular chaperone (small heat shock protein) gene gene3881 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3919 CH60_392 CH60_392 CH60_392 409398 410435 + branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_392 CH60_3920 CH60_3920 ibpA ibpA 4335684 4336097 - small heat shock protein ibpA [O] COG0071 Molecular chaperone (small heat shock protein) gene gene3882 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3920 CH60_3921 CH60_3921 CH60_3921 4336465 4336803 + hypothetical protein conserved hypothetical protein~[R] COG5645 Predicted periplasmic lipoprotein gene gene3883 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3921 CH60_3922 CH60_3922 CH60_3922 4336843 4337157 - hypothetical protein dipeptidyl peptidase IV (DPP IV) N-terminal region family protein gene gene3884 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3922 CH60_3923 CH60_3923 CH60_3923 4337147 4337458 - hypothetical protein conserved hypothetical protein gene gene3885 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3923 CH60_3924 CH60_3924 CH60_3924 4337666 4338628 + pyridoxal-phosphate dependent enzyme family protein [E] COG1171 Threonine dehydratase gene gene3886 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3924 CH60_3925 CH60_3925 CH60_3925 4338622 4339575 + ornithine cyclodeaminase/mu-crystallin family protein [E] COG2423 Predicted ornithine cyclodeaminase%2C mu-crystallin homolog gene gene3887 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3925 CH60_3926 CH60_3926 CH60_3926 4339782 4340297 + transposase family protein [L] COG2963 Transposase and inactivated derivatives gene gene3888 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3926 CH60_3927 CH60_3927 CH60_3927 4341075 4341296 - hypothetical protein conserved hypothetical protein gene gene3890 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3927 CH60_3928 CH60_3928 CH60_3928 4340351 4341136 + integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene3889 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3928 CH60_3929 CH60_3929 CH60_3929 4341527 4342336 - HAD hydrolase%2C IIB family protein HAD-SF-IIB: HAD hydrolase%2C IIB family protein~[R] COG0561 Predicted hydrolases of the HAD superfamily gene gene3891 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3929 CH60_393 CH60_393 CH60_393 410519 411400 + xylose isomerase-like TIM barrel family protein [G] COG3623 Putative L-xylulose-5-phosphate 3-epimerase gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_393 CH60_3930 CH60_3930 gyrB gyrB 4342552 4344966 - DNA gyrase%2C B subunit gyrB: DNA gyrase%2C B subunit~[L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II%2C topoisomerase IV)%2C B subunit gene gene3892 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3930 CH60_3931 CH60_3931 recF recF 4344986 4346071 - DNA replication and repair RecF family protein recf: DNA replication and repair RecF family protein~[L] COG1195 Recombinational DNA repair ATPase (RecF pathway) gene gene3893 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3931 CH60_3932 CH60_3932 dnaN dnaN 4346244 4347344 - DNA polymerase III%2C beta subunit dnan: DNA polymerase III%2C beta subunit~[L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) gene gene3894 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3932 CH60_3933 CH60_3933 dnaA dnaA 4347349 4348737 - chromosomal replication initiator protein DnaA dnaA: chromosomal replication initiator protein DnaA~[L] COG0593 ATPase involved in DNA replication initiation gene gene3895 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3933 CH60_3934 CH60_3934 CH60_3934 4348930 4349070 + hypothetical protein gene gene3896 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3934 CH60_3935 CH60_3935 rpmH rpmH 4349447 4349587 + ribosomal protein L34 rpmH_bact: ribosomal protein L34~[J] COG0230 Ribosomal protein L34 gene gene3897 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3935 CH60_3936 CH60_3936 rnpA rnpA 4349606 4349965 + ribonuclease P protein component rnpA: ribonuclease P protein component~[J] COG0594 RNase P protein component gene gene3898 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3936 CH60_3937 CH60_3937 CH60_3937 4349929 4350186 + putative membrane protein insertion efficiency factor [S] COG0759 Uncharacterized conserved protein gene gene3899 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3937 CH60_3938 CH60_3938 yidC yidC 4350189 4351829 + Preprotein translocase subunit YidC yidC_nterm: membrane protein insertase%2C YidC/Oxa1 family%2C N-terminal domain~[U] COG0706 Preprotein translocase subunit YidC gene gene3900 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3938 CH60_3939 CH60_3939 trmE trmE 4351972 4353336 + tRNA modification GTPase TrmE mnmE_trmE_thdF: tRNA modification GTPase TrmE~[R] COG0486 Predicted GTPase gene gene3901 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3939 CH60_394 CH60_394 CH60_394 411411 412907 + hypothetical protein FGGY family of carbohydrate kinase%2C N-terminal domain protein~[G] COG1070 Sugar (pentulose and hexulose) kinases gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_394 CH60_3940 CH60_3940 CH60_3940 4353522 4354721 + NAD(P)H binding domain of trans-2-enoyl-CoA reductase family protein [S] COG3007 Uncharacterized paraquat-inducible protein B gene gene3902 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3940 CH60_3941 CH60_3941 CH60_3941 4355189 4355470 - putative membrane protein gene gene3903 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3941 CH60_3942 CH60_3942 CH60_3942 4355532 4356152 - hypothetical protein conserved hypothetical protein gene gene3904 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3942 CH60_3943 CH60_3943 CH60_3943 4356697 4358025 - permease family protein [R] COG2252 Permeases gene gene3905 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3943 CH60_3944 CH60_3944 CH60_3944 4358518 4359186 + HAD hydrolase%2C IA%2C variant 1 family protein HAD-SF-IA-v1: HAD hydrolase%2C IA%2C variant 1 family protein~[R] COG0637 Predicted phosphatase/phosphohexomutase gene gene3906 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3944 CH60_3945 CH60_3945 CH60_3945 4359221 4359976 - amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG0765 ABC-type amino acid transport system%2C permease component gene gene3907 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3945 CH60_3946 CH60_3946 CH60_3946 4359978 4360715 - amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG0765 ABC-type amino acid transport system%2C permease component gene gene3908 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3946 CH60_3947 CH60_3947 CH60_3947 4360898 4361752 - bacterial extracellular solute-binding s%2C 3 family protein [ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain gene gene3909 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3947 CH60_3948 CH60_3948 CH60_3948 4361972 4362643 - polymer-forming cytoskeletal family protein [M] COG1664 Integral membrane protein CcmA involved in cell shape determination gene gene3910 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3948 CH60_3949 CH60_3949 phoU phoU 4362939 4363661 - phosphate transport system regulatory protein PhoU phoU_full: phosphate transport system regulatory protein PhoU~[P] COG0704 Phosphate uptake regulator gene gene3911 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3949 CH60_395 CH60_395 CH60_395 413305 414948 + hydrolyase%2C tartrate alpha subunit/fumarate%2C Fe-S type domain protein ttdA_fumA_fumB: hydrolyase%2C tartrate alpha subunit/fumarate%2C Fe-S type domain protein~[C] COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I%2C N-terminal domain gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_395 CH60_3950 CH60_3950 pstB pstB 4363749 4364525 - phosphate ABC transporter%2C ATP-binding protein 3a0107s01c2: phosphate ABC transporter%2C ATP-binding protein~[P] COG1117 ABC-type phosphate transport system%2C ATPase component gene gene3912 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3950 CH60_3951 CH60_3951 pstA pstA 4364606 4365493 - phosphate ABC transporter%2C permease protein PstA 3a0107s02c: phosphate ABC transporter%2C permease protein PstA~[P] COG0581 ABC-type phosphate transport system%2C permease component gene gene3913 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3951 CH60_3952 CH60_3952 pstC pstC 4365495 4366442 - phosphate ABC transporter%2C permease protein PstC phosphate_pstC: phosphate ABC transporter%2C permease protein PstC~[P] COG0573 ABC-type phosphate transport system%2C permease component gene gene3914 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3952 CH60_3953 CH60_3953 pstS pstS 4366671 4367711 - phosphate ABC transporter%2C phosphate-binding protein PstS 3a0107s03: phosphate ABC transporter%2C phosphate-binding protein PstS~[P] COG0226 ABC-type phosphate transport system%2C periplasmic component gene gene3915 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3953 CH60_3954 CH60_3954 glmS glmS 4368194 4370023 - glutamine-fructose-6-phosphate transaminase glmS: glutamine-fructose-6-phosphate transaminase~[M] COG0449 Glucosamine 6-phosphate synthetase%2C contains amidotransferase and phosphosugar isomerase domains gene gene3916 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3954 CH60_3955 CH60_3955 glmU glmU 4370224 4371594 - UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase~[M] COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) gene gene3917 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3955 CH60_3956 CH60_3956 atpC atpC 4372215 4372637 - ATP synthase F1%2C epsilon subunit ATP_synt_epsi: ATP synthase F1%2C epsilon subunit~[C] COG0355 F0F1-type ATP synthase%2C epsilon subunit (mitochondrial delta subunit) gene gene3918 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3956 CH60_3957 CH60_3957 atpD atpD 4372659 4374041 - ATP synthase F1%2C beta subunit atpD: ATP synthase F1%2C beta subunit~[C] COG0055 F0F1-type ATP synthase%2C beta subunit gene gene3919 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3957 CH60_3958 CH60_3958 atpG atpG 4374197 4375060 - ATP synthase F1%2C gamma subunit ATPsyn_F1gamma: ATP synthase F1%2C gamma subunit~[C] COG0224 F0F1-type ATP synthase%2C gamma subunit gene gene3920 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3958 CH60_3959 CH60_3959 atpA atpA 4375122 4376663 - ATP synthase F1%2C alpha subunit atpA: ATP synthase F1%2C alpha subunit~[C] COG0056 F0F1-type ATP synthase%2C alpha subunit gene gene3921 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3959 CH60_396 CH60_396 CH60_396 415131 415382 + hypothetical protein conserved hypothetical protein gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_396 CH60_3960 CH60_3960 atpH atpH 4376678 4377211 - ATP synthase F1%2C delta subunit ATP_synt_delta: ATP synthase F1%2C delta subunit~[C] COG0712 F0F1-type ATP synthase%2C delta subunit (mitochondrial oligomycin sensitivity protein) gene gene3922 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3960 CH60_3961 CH60_3961 atpF atpF 4377226 4377696 - ATP synthase F0%2C B subunit ATP_synt_b: ATP synthase F0%2C B subunit~[C] COG0711 F0F1-type ATP synthase%2C subunit b gene gene3923 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3961 CH60_3962 CH60_3962 atpE atpE 4377758 4377997 - ATP synthase F0%2C C subunit ATP_synt_c: ATP synthase F0%2C C subunit~[C] COG0636 F0F1-type ATP synthase%2C subunit c/Archaeal/vacuolar-type H+-ATPase%2C subunit K gene gene3924 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3962 CH60_3963 CH60_3963 atpB atpB 4378047 4378871 - ATP synthase F0%2C A subunit ATP_synt_6_or_A: ATP synthase F0%2C A subunit~[C] COG0356 F0F1-type ATP synthase%2C subunit a gene gene3925 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3963 CH60_3964 CH60_3964 CH60_3964 4378911 4379294 - ATP synthase I chain family protein [C] COG3312 F0F1-type ATP synthase%2C subunit I gene gene3926 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3964 CH60_3965 CH60_3965 rsmG rsmG 4379961 4380581 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG~[M] COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division gene gene3927 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3965 CH60_3966 CH60_3966 gidA gidA 4380727 4382616 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA~[D] COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division gene gene3928 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3966 CH60_3967 CH60_3967 CH60_3967 4382997 4383437 - flavodoxin family protein [C] COG0716 Flavodoxins gene gene3929 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3967 CH60_3968 CH60_3968 CH60_3968 4383530 4383991 - asnC-type helix-turn-helix domain protein [K] COG1522 Transcriptional regulators gene gene3930 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3968 CH60_3969 CH60_3969 asnA asnA 4384161 4385153 + aspartate--ammonia ligase asnA: aspartate--ammonia ligase~[E] COG2502 Asparagine synthetase A gene gene3931 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3969 CH60_397 CH60_397 map map 415379 416164 + methionine aminopeptidase%2C type I met_pdase_I: methionine aminopeptidase%2C type I~[J] COG0024 Methionine aminopeptidase gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_397 CH60_3970 CH60_3970 CH60_3970 4385252 4386718 - VWA domain containing CoxE-like family protein [R] COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain gene gene3932 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3970 CH60_3971 CH60_3971 CH60_3971 4386722 4388275 - AAA domain family protein [R] COG0714 MoxR-like ATPases gene gene3933 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3971 CH60_3972 CH60_3972 kup kup 4388549 4390417 + potassium uptake protein kup: potassium uptake protein~[P] COG3158 K+ transporter gene gene3934 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3972 CH60_3973 CH60_3973 CH60_3973 4390622 4391041 + rbsD / FucU transport family protein [G] COG1869 ABC-type ribose transport system%2C auxiliary component gene gene3935 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3973 CH60_3974 CH60_3974 rbsK rbsK 4391092 4392018 + ribokinase D_ribokin_bact: ribokinase~[G] COG0524 Sugar kinases%2C ribokinase family gene gene3936 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3974 CH60_3975 CH60_3975 CH60_3975 4392238 4393662 - drug resistance MFS transporter%2C drug:H+ antiporter-2 family protein efflux_EmrB: drug resistance MFS transporter%2C drug:H+ antiporter-2 family protein~[GEPR] COG0477 Permeases of the major facilitator superfamily gene gene3938 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3975 CH60_3976 CH60_3976 rbsR rbsR 4392038 4392241 + ribose operon repressor [K] COG1609 Transcriptional regulators gene gene3937 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3976 CH60_3977 CH60_3977 CH60_3977 4393742 4394431 - bacterial regulatory s%2C gntR family protein [K] COG2186 Transcriptional regulators gene gene3939 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3977 CH60_3978 CH60_3978 CH60_3978 4394998 4396528 + 16S ribosomal RNA rRNA gene3940 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3978 CH60_3979 CH60_3979 CH60_3979 4396670 4396745 + tRNA-Glu tRNA gene3941 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3979 CH60_398 CH60_398 CH60_398 416540 417727 - hypothetical protein shET2 enterotoxin%2C N-terminal region family protein~[R] COG0666 FOG: Ankyrin repeat gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_398 CH60_3980 CH60_3980 CH60_3980 4396999 4399902 + 23S ribosomal RNA rRNA gene3942 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3980 CH60_3981 CH60_3981 CH60_3981 4400014 4400128 + 5S ribosomal RNA rRNA gene3943 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3981 CH60_3982 CH60_3982 CH60_3982 4400630 4401838 + transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene3944 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3982 CH60_3983 CH60_3983 mobB mobB 4401896 4402426 - molybdopterin-guanine dinucleotide biosynthesis protein B mobB: molybdopterin-guanine dinucleotide biosynthesis protein B~[H] COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein gene gene3945 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3983 CH60_3984 CH60_3984 mobA mobA 4402426 4403013 - molybdenum cofactor guanylyltransferase molyb_mobA: molybdenum cofactor guanylyltransferase~[H] COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A gene gene3946 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3984 CH60_3985 CH60_3985 yihD yihD 4403167 4403436 + protein yihD [S] COG3084 Uncharacterized protein conserved in bacteria gene gene3947 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3985 CH60_3986 CH60_3986 CH60_3986 4403527 4404513 + phosphotransferase enzyme family protein [R] COG2334 Putative homoserine kinase type II (protein kinase fold) gene gene3948 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3986 CH60_3987 CH60_3987 CH60_3987 4404541 4405164 + DSBA-like thioredoxin domain protein [OC] COG0526 Thiol-disulfide isomerase and thioredoxins gene gene3949 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3987 CH60_3988 CH60_3988 polA polA 4405656 4408454 + DNA polymerase I pola: DNA polymerase I~[L] COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains gene gene3950 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3988 CH60_3989 CH60_3989 ysxC ysxC 4408862 4409512 - ribosome biogenesis GTP-binding protein YsxC GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC~[R] COG0218 Predicted GTPase gene gene3951 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3989 CH60_399 CH60_399 CH60_399 418160 420256 - tonB dependent receptor family protein [P] COG4771 Outer membrane receptor for ferrienterochelin and colicins gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_399 CH60_3990 CH60_3990 CH60_3990 4410257 4410823 + der GTPase activator family protein [S] COG3078 Uncharacterized protein conserved in bacteria gene gene3952 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3990 CH60_3991 CH60_3991 hemN hemN 4411006 4412379 + oxygen-independent coproporphyrinogen III oxidase hemN: oxygen-independent coproporphyrinogen III oxidase~[H] COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases gene gene3953 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3991 CH60_3992 CH60_3992 ntrC ntrC 4412433 4413845 - nitrogen regulation protein NR ntrC: nitrogen regulation protein NR~[T] COG2204 Response regulator containing CheY-like receiver%2C AAA-type ATPase%2C and DNA-binding domains gene gene3954 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3992 CH60_3993 CH60_3993 CH60_3993 4413853 4414902 - PAS fold family protein [T] COG3852 Signal transduction histidine kinase%2C nitrogen specific gene gene3955 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3993 CH60_3994 CH60_3994 glnA glnA 4415155 4416564 - glutamine synthetase%2C type I glnA: glutamine synthetase%2C type I~[E] COG0174 Glutamine synthetase gene gene3956 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3994 CH60_3995 CH60_3995 typA typA 4417126 4418949 + GTP-binding protein TypA/BipA typA_BipA: GTP-binding protein TypA/BipA~[T] COG1217 Predicted membrane GTPase involved in stress response gene gene3957 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3995 CH60_3996 CH60_3996 CH60_3996 4419271 4419861 + HAD hydrolase%2C IA%2C variant 3 family protein HAD-SF-IA-v3: HAD hydrolase%2C IA%2C variant 3 family protein~[R] COG1011 Predicted hydrolase (HAD superfamily) gene gene3958 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3996 CH60_3997 CH60_3997 yihY yihY 4419958 4420842 + YihY family inner membrane domain protein yihY_not_rbn: YihY family inner membrane domain protein~[S] COG1295 Predicted membrane protein gene gene3959 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3997 CH60_3998 CH60_3998 dtd dtd 4420849 4421286 + D-tyrosyl-tRNA(Tyr) deacylase [J] COG1490 D-Tyr-tRNAtyr deacylase gene gene3960 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3998 CH60_3999 CH60_3999 CH60_3999 4421360 4422139 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene3961 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_3999 CH60_4 CH60_4 CH60_4 3383 4243 - ketose-bisphosphate aldolase family protein cbbA: ketose-bisphosphate aldolase family protein~[G] COG0191 Fructose/tagatose bisphosphate aldolase gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4 CH60_40 CH60_40 CH60_40 50128 52143 - diguanylate cyclase domain protein GGDEF: diguanylate cyclase domain protein~[T] COG2200 FOG: EAL domain gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_40 CH60_400 CH60_400 CH60_400 420429 420680 + hypothetical protein conserved hypothetical protein gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_400 CH60_4000 CH60_4000 CH60_4000 4422207 4423160 - helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene3962 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4000 CH60_4001 CH60_4001 CH60_4001 4423430 4424353 + putative thioesterase domain protein yiiD_Cterm: putative thioesterase domain protein~[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases gene gene3963 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4001 CH60_4002 CH60_4002 CH60_4002 4424488 4426197 - asmA family protein gene gene3964 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4002 CH60_4003 CH60_4003 pbuX pbuX 4426345 4427730 - xanthine permease family protein pbuX: xanthine permease family protein~[F] COG2233 Xanthine/uracil permeases gene gene3965 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4003 CH60_4004 CH60_4004 gltS gltS 4427968 4429182 + sodium/glutamate symporter gltS: sodium/glutamate symporter~[E] COG0786 Na+/glutamate symporter gene gene3966 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4004 CH60_4005 CH60_4005 recG recG 4429548 4431629 - ATP-dependent DNA helicase RecG recG: ATP-dependent DNA helicase RecG~[LK] COG1200 RecG-like helicase gene gene3967 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4005 CH60_4006 CH60_4006 trmH trmH 4431630 4432289 - tRNA guanosine-2'-O-methyltransferase [J] COG0566 rRNA methylases gene gene3968 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4006 CH60_4007 CH60_4007 spoT spoT 4432328 4434436 - bifunctional (p)ppGpp synthase/hydrolase SpoT [TK] COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases gene gene3969 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4007 CH60_4008 CH60_4008 rpoZ rpoZ 4434456 4434731 - DNA-directed RNA polymerase%2C omega subunit rpoZ: DNA-directed RNA polymerase%2C omega subunit~[K] COG1758 DNA-directed RNA polymerase%2C subunit K/omega gene gene3970 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4008 CH60_4009 CH60_4009 gmk gmk 4434786 4435409 - guanylate kinase guanyl_kin: guanylate kinase~[F] COG0194 Guanylate kinase gene gene3971 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4009 CH60_401 CH60_401 CH60_401 421078 421632 + transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_401 CH60_4010 CH60_4010 CH60_4010 4435810 4437513 + NAD-dependent DNA ligase adenylation domain protein [L] COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) gene gene3972 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4010 CH60_4011 CH60_4011 CH60_4011 4437526 4438149 - hypothetical protein conserved hypothetical protein~[S] COG2860 Predicted membrane protein gene gene3973 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4011 CH60_4012 CH60_4012 CH60_4012 4438552 4439415 - hypothetical protein conserved hypothetical protein~[S] COG1561 Uncharacterized stress-induced protein gene gene3974 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4012 CH60_4013 CH60_4013 rph rph 4439542 4440258 + ribonuclease PH RNasePH: ribonuclease PH~[J] COG0689 RNase PH gene gene3975 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4013 CH60_4014 CH60_4014 pyrE pyrE 4440425 4441072 + orotate phosphoribosyltransferase pyrE: orotate phosphoribosyltransferase~[F] COG0461 Orotate phosphoribosyltransferase gene gene3976 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4014 CH60_4015 CH60_4015 CH60_4015 4441207 4441803 - bacterial regulatory s%2C tetR family protein [K] COG1309 Transcriptional regulator gene gene3977 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4015 CH60_4016 CH60_4016 dut dut 4441925 4442383 - dUTP diphosphatase family protein dut: dUTP diphosphatase family protein~[F] COG0756 dUTPase gene gene3978 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4016 CH60_4017 CH60_4017 coaBC coaBC 4442361 4443575 - phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase~[H] COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase gene gene3979 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4017 CH60_4018 CH60_4018 CH60_4018 4443772 4444440 + DNA repair RadC family protein radc: DNA repair RadC family protein~[L] COG2003 DNA repair proteins gene gene3980 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4018 CH60_4019 CH60_4019 rpmB rpmB 4444703 4444939 + ribosomal protein L28 L28: ribosomal protein L28~[J] COG0227 Ribosomal protein L28 gene gene3981 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4019 CH60_402 CH60_402 CH60_402 421674 422285 + transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_402 CH60_4020 CH60_4020 rpmG rpmG 4444951 4445118 + ribosomal protein L33 rpmG_bact: ribosomal protein L33~[J] COG0267 Ribosomal protein L33 gene gene3982 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4020 CH60_4021 CH60_4021 mutM mutM 4445201 4446010 + DNA-formamidopyrimidine glycosylase fpg: DNA-formamidopyrimidine glycosylase~[L] COG0266 Formamidopyrimidine-DNA glycosylase gene gene3983 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4021 CH60_4022 CH60_4022 coaD coaD 4446016 4446495 - pantetheine-phosphate adenylyltransferase coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase~[H] COG0669 Phosphopantetheine adenylyltransferase gene gene3984 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4022 CH60_4023 CH60_4023 CH60_4023 4446492 4447274 - glycosyltransferase like 2 family protein [M] COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene3985 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4023 CH60_4024 CH60_4024 CH60_4024 4447275 4448552 - glycosyl transferases group 1 family protein [M] COG1519 3-deoxy-D-manno-octulosonic-acid transferase gene gene3986 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4024 CH60_4025 CH60_4025 waaC waaC 4448972 4449937 - lipopolysaccharide heptosyltransferase I heptsyl_trn_I: lipopolysaccharide heptosyltransferase I~[M] COG0859 ADP-heptose:LPS heptosyltransferase gene gene3987 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4025 CH60_4026 CH60_4026 waaF waaF 4449937 4451001 - lipopolysaccharide heptosyltransferase II heptsyl_trn_II: lipopolysaccharide heptosyltransferase II~[M] COG0859 ADP-heptose:LPS heptosyltransferase gene gene3988 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4026 CH60_4027 CH60_4027 rfaD rfaD 4451032 4451964 - ADP-glyceromanno-heptose 6-epimerase heptose_epim: ADP-glyceromanno-heptose 6-epimerase~[MG] COG0451 Nucleoside-diphosphate-sugar epimerases gene gene3989 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4027 CH60_4028 CH60_4028 kbl kbl 4452210 4453421 + glycine C-acetyltransferase 2am3keto_CoA: glycine C-acetyltransferase~[H] COG0156 7-keto-8-aminopelargonate synthetase and related enzymes gene gene3990 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4028 CH60_4029 CH60_4029 tdh tdh 4453431 4454456 + L-threonine 3-dehydrogenase tdh: L-threonine 3-dehydrogenase~[ER] COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases gene gene3991 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4029 CH60_403 CH60_403 CH60_403 422290 423618 + cytochrome c family protein [P] COG1858 Cytochrome c peroxidase gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_403 CH60_4030 CH60_4030 CH60_4030 4454594 4455094 - divergent polysaccharide deacetylase family protein [S] COG2861 Uncharacterized protein conserved in bacteria gene gene3992 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4030 CH60_4031 CH60_4031 CH60_4031 4455091 4455528 - divergent polysaccharide deacetylase family protein [S] COG2861 Uncharacterized protein conserved in bacteria gene gene3993 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4031 CH60_4032 CH60_4032 CH60_4032 4455552 4456922 - peptidase M23 family protein [D] COG4942 Membrane-bound metallopeptidase gene gene3994 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4032 CH60_4033 CH60_4033 gpmI gpmI 4456932 4458479 - phosphoglycerate mutase pgm_bpd_ind: phosphoglycerate mutase~[G] COG0696 Phosphoglyceromutase gene gene3995 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4033 CH60_4034 CH60_4034 CH60_4034 4458879 4459310 + rhodanese-like domain protein [P] COG0607 Rhodanese-related sulfurtransferase gene gene3996 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4034 CH60_4035 CH60_4035 grxC grxC 4459429 4459677 + glutaredoxin 3 GRX_bact: glutaredoxin 3~[O] COG0695 Glutaredoxin and related proteins gene gene3997 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4035 CH60_4036 CH60_4036 secB secB 4459765 4460241 + protein-export chaperone SecB secB: protein-export chaperone SecB~[U] COG1952 Preprotein translocase subunit SecB gene gene3998 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4036 CH60_4037 CH60_4037 CH60_4037 4460241 4461260 + ketopantoate reductase PanE/ApbA family protein [C] COG0240 Glycerol-3-phosphate dehydrogenase gene gene3999 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4037 CH60_4038 CH60_4038 cysE cysE 4461526 4462347 + serine O-acetyltransferase cysE: serine O-acetyltransferase~[E] COG1045 Serine acetyltransferase gene gene4000 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4038 CH60_4039 CH60_4039 trmL trmL 4462470 4462958 - tRNA (cytidine(34)-2'-O)-methyltransferase tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase~[J] COG0219 Predicted rRNA methylase (SpoU class) gene gene4001 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4039 CH60_404 CH60_404 CH60_404 423689 424453 + bacterial extracellular solute-binding s%2C 3 family protein [ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_404 CH60_4040 CH60_4040 CH60_4040 4463147 4464211 + methylated-DNA--[]-cysteine S-methyltransferase family protein ogt: methylated-DNA--[]-cysteine S-methyltransferase family protein~[F] COG2169 Adenosine deaminase gene gene4002 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4040 CH60_4041 CH60_4041 cpxA cpxA 4464260 4465636 - sensor protein CpxA [T] COG0642 Signal transduction histidine kinase gene gene4003 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4041 CH60_4042 CH60_4042 cpxR cpxR 4465633 4466331 - transcriptional regulatory protein CpxR [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene4004 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4042 CH60_4043 CH60_4043 CH60_4043 4466505 4466993 + LTXXQ motif family protein [UNTP] COG3678 P pilus assembly/Cpx signaling pathway%2C periplasmic inhibitor/zinc-resistance associated protein gene gene4005 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4043 CH60_4044 CH60_4044 CH60_4044 4467710 4468630 + hypothetical protein T_den_put_tspse: conserved hypothetical family protein~[S] COG5464 Uncharacterized conserved protein gene gene4006 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4044 CH60_4045 CH60_4045 CH60_4045 4469192 4470094 + cation diffusion facilitator transporter family protein CDF: cation diffusion facilitator transporter family protein~[P] COG0053 Predicted Co/Zn/Cd cation transporters gene gene4007 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4045 CH60_4046 CH60_4046 pfkA pfkA 4470312 4471295 + 6-phosphofructokinase PFKA_ATP: 6-phosphofructokinase~[G] COG0205 6-phosphofructokinase gene gene4008 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4046 CH60_4047 CH60_4047 CH60_4047 4472502 4472774 - hypothetical protein gene gene4010 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4047 CH60_4048 CH60_4048 CH60_4048 4471516 4472505 + sulfate ABC transporter%2C sulfate-binding family protein 3a0106s03: sulfate ABC transporter%2C sulfate-binding family protein~[P] COG1613 ABC-type sulfate transport system%2C periplasmic component gene gene4009 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4048 CH60_4049 CH60_4049 CH60_4049 4472755 4473531 - bacterial extracellular solute-binding family protein [P] COG0725 ABC-type molybdate transport system%2C periplasmic component gene gene4011 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4049 CH60_405 CH60_405 CH60_405 424877 425080 + hypothetical protein conserved hypothetical protein gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_405 CH60_4050 CH60_4050 ybhI ybhI 4473649 4475076 - inner membrane protein ybhI [P] COG0471 Di- and tricarboxylate transporters gene gene4012 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4050 CH60_4051 CH60_4051 ligK ligK 4475142 4475855 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase~[H] COG0684 Demethylmenaquinone methyltransferase gene gene4013 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4051 CH60_4052 CH60_4052 CH60_4052 4475852 4476589 - glcNAc-PI de-N-acetylase family protein [S] COG2120 Uncharacterized proteins%2C LmbE homologs gene gene4014 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4052 CH60_4053 CH60_4053 CH60_4053 4476783 4477961 + bacterial regulatory helix-turn-helix%2C lysR family protein [K] COG0583 Transcriptional regulator gene gene4015 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4053 CH60_4054 CH60_4054 tpiA tpiA 4478193 4478960 - triose-phosphate isomerase tim: triose-phosphate isomerase~[G] COG0149 Triosephosphate isomerase gene gene4016 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4054 CH60_4055 CH60_4055 CH60_4055 4479089 4479724 - hypothetical protein conserved hypothetical protein gene gene4017 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4055 CH60_4056 CH60_4056 CH60_4056 4479938 4480306 + hypothetical protein conserved hypothetical protein~[S] COG3152 Predicted membrane protein gene gene4018 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4056 CH60_4057 CH60_4057 CH60_4057 4480647 4481393 - oxidoreductase NAD-binding domain protein [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 gene gene4019 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4057 CH60_4058 CH60_4058 glpX glpX 4481548 4482558 - fructose-1%2C6-bisphosphatase%2C class II glpX: fructose-1%2C6-bisphosphatase%2C class II~[G] COG1494 Fructose-1%2C6-bisphosphatase/sedoheptulose 1%2C7-bisphosphatase and related proteins gene gene4020 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4058 CH60_4059 CH60_4059 glpK glpK 4482795 4484318 - glycerol kinase glycerol_kin: glycerol kinase~[C] COG0554 Glycerol kinase gene gene4021 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4059 CH60_406 CH60_406 CH60_406 425291 425554 + faeA-like family protein gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_406 CH60_4060 CH60_4060 glpF glpF 4484495 4485343 - glycerol uptake facilitator protein [G] COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) gene gene4022 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4060 CH60_4061 CH60_4061 CH60_4061 4485971 4486210 + hypothetical protein conserved hypothetical protein~[S] COG3074 Uncharacterized protein conserved in bacteria gene gene4023 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4061 CH60_4062 CH60_4062 CH60_4062 4486418 4486876 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene4024 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4062 CH60_4063 CH60_4063 CH60_4063 4487261 4489375 - ABC transporter family protein [V] COG2274 ABC-type bacteriocin/lantibiotic exporters%2C contain an N-terminal double-glycine peptidase domain gene gene4025 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4063 CH60_4064 CH60_4064 CH60_4064 4489368 4490660 - hlyD secretion family protein [M] COG0845 Membrane-fusion protein gene gene4026 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4064 CH60_4065 CH60_4065 CH60_4065 4490873 4491112 + hypothetical protein conserved hypothetical protein gene gene4027 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4065 CH60_4066 CH60_4066 CH60_4066 4491742 4492326 + hypothetical protein conserved hypothetical protein gene gene4028 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4066 CH60_4067 CH60_4067 rraA rraA 4492443 4492928 - regulator of ribonuclease activity A rraA_entero: regulator of ribonuclease activity A~[H] COG0684 Demethylmenaquinone methyltransferase gene gene4029 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4067 CH60_4068 CH60_4068 menA menA 4493070 4493987 - 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase menA: 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase~[H] COG1575 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase gene gene4030 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4068 CH60_4069 CH60_4069 hslU hslU 4494223 4495554 - ATP-dependent protease HslVU%2C ATPase subunit hslU: ATP-dependent protease HslVU%2C ATPase subunit~[O] COG1220 ATP-dependent protease HslVU (ClpYQ)%2C ATPase subunit gene gene4031 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4069 CH60_407 CH60_407 CH60_407 425801 426142 + bacterial regulatory%2C arsR family protein [K] COG0640 Predicted transcriptional regulators gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_407 CH60_4070 CH60_4070 hslV hslV 4495625 4496149 - ATP-dependent protease HslVU%2C peptidase subunit ATP_dep_HslV: ATP-dependent protease HslVU%2C peptidase subunit~[O] COG5405 ATP-dependent protease HslVU (ClpYQ)%2C peptidase subunit gene gene4032 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4070 CH60_4071 CH60_4071 ftsN ftsN 4496249 4496995 - cell division protein FtsN ftsN: cell division protein FtsN~[D] COG3087 Cell division protein gene gene4033 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4071 CH60_4072 CH60_4072 CH60_4072 4497160 4498188 - bacterial regulatory s%2C lacI family protein [K] COG1609 Transcriptional regulators gene gene4034 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4072 CH60_4073 CH60_4073 CH60_4073 4498311 4498454 - hypothetical protein conserved hypothetical protein gene gene4035 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4073 CH60_4074 CH60_4074 priA priA 4498541 4500739 - primosomal protein N' priA: primosomal protein N'~[L] COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase gene gene4036 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4074 CH60_4075 CH60_4075 rpmE rpmE 4500992 4501207 + ribosomal protein L31 L31: ribosomal protein L31~[J] COG0254 Ribosomal protein L31 gene gene4037 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4075 CH60_4076 CH60_4076 yiaA yiaA 4501732 4502187 - inner membrane protein yiaA [S] COG4682 Predicted membrane protein gene gene4038 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4076 CH60_4077 CH60_4077 CH60_4077 4502536 4502853 - met Apo-repressor%2C MetJ family protein [KE] COG3060 Transcriptional regulator of met regulon gene gene4039 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4077 CH60_4078 CH60_4078 metB metB 4503231 4504391 + O-succinylhomoserine (thiol)-lyase O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase~[E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases gene gene4040 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4078 CH60_4079 CH60_4079 CH60_4079 4504394 4506829 + aspartate kinase domain protein asp_kinase: aspartate kinase domain protein~[E] COG0527 Aspartokinases gene gene4041 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4079 CH60_408 CH60_408 arsB arsB 426227 427516 + arsenite/antimonite efflux pump membrane family protein 2a45: arsenite/antimonite efflux pump membrane family protein~[P] COG1055 Na+/H+ antiporter NhaD and related arsenite permeases gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_408 CH60_4080 CH60_4080 metF metF 4507062 4507946 + methylenetetrahydrofolate reductase [NAD(P)H] fadh2: methylenetetrahydrofolate reductase [NAD(P)H]~[E] COG0685 5%2C10-methylenetetrahydrofolate reductase gene gene4042 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4080 CH60_4081 CH60_4081 CH60_4081 4508116 4508412 - integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene4043 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4081 CH60_4082 CH60_4082 CH60_4082 4508954 4509469 - transposase family protein [L] COG2963 Transposase and inactivated derivatives gene gene4044 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4082 CH60_4083 CH60_4083 CH60_4083 4509832 4510824 + acyltransferase family protein [S] COG3274 Uncharacterized protein conserved in bacteria gene gene4045 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4083 CH60_4084 CH60_4084 CH60_4084 4511706 4512263 + fimbrial family protein [NU] COG3539 P pilus assembly protein%2C pilin FimA gene gene4046 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4084 CH60_4085 CH60_4085 CH60_4085 4512378 4514168 + hypothetical protein papC N-terminal domain protein~[NU] COG3188 P pilus assembly protein%2C porin PapC gene gene4047 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4085 CH60_4086 CH60_4086 CH60_4086 4514194 4514829 + outer membrane usher family protein [NU] COG3188 P pilus assembly protein%2C porin PapC gene gene4048 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4086 CH60_4087 CH60_4087 CH60_4087 4514961 4515689 + hypothetical protein pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD gene gene4049 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4087 CH60_4088 CH60_4088 CH60_4088 4515728 4516714 + fimbrial family protein gene gene4050 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4088 CH60_4089 CH60_4089 xylB xylB 4516794 4518248 - xylulokinase xylB: xylulokinase~[G] COG1070 Sugar (pentulose and hexulose) kinases gene gene4051 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4089 CH60_409 CH60_409 CH60_409 428055 429026 + sigma-70%2C region 4 family protein [K] COG2390 Transcriptional regulator%2C contains sigma factor-related N-terminal domain gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_409 CH60_4090 CH60_4090 xylA xylA 4518372 4519691 - xylose isomerase xylose_isom_A: xylose isomerase~[G] COG2115 Xylose isomerase gene gene4052 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4090 CH60_4091 CH60_4091 xylF xylF 4520154 4521149 + D-xylose ABC transporter%2C D-xylose-binding protein xylF: D-xylose ABC transporter%2C D-xylose-binding protein~[G] COG4213 ABC-type xylose transport system%2C periplasmic component gene gene4053 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4091 CH60_4092 CH60_4092 ccmA ccmA 4521357 4522889 + heme ABC exporter%2C ATP-binding protein CcmA ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene4054 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4092 CH60_4093 CH60_4093 CH60_4093 4522876 4524060 + branched-chain amino acid transport system / permease component family protein [G] COG4214 ABC-type xylose transport system%2C permease component gene gene4055 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4093 CH60_4094 CH60_4094 CH60_4094 4524150 4525343 + helix-turn-helix domain protein [K] COG1609 Transcriptional regulators gene gene4056 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4094 CH60_4095 CH60_4095 CH60_4095 4525473 4525563 + tRNA-Sec tRNA-SeC(p) tRNA gene4057 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4095 CH60_4096 CH60_4096 CH60_4096 4525729 4526922 + phage integrase family protein [L] COG0582 Integrase gene gene4058 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4096 CH60_4097 CH60_4097 CH60_4097 4526909 4528288 + hypothetical protein conserved hypothetical protein gene gene4059 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4097 CH60_4098 CH60_4098 CH60_4098 4528556 4528801 - ogr/Delta-like zinc finger family protein gene gene4060 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4098 CH60_4099 CH60_4099 CH60_4099 4528975 4529268 - putative transposase gene gene4061 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4099 CH60_41 CH60_41 CH60_41 52457 53356 - glycosyl hydrolases 8 family protein [G] COG3405 Endoglucanase Y gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_41 CH60_410 CH60_410 dhaL dhaL 429147 429821 - dihydroxyacetone kinase%2C L subunit dha_L_ycgS: dihydroxyacetone kinase%2C L subunit~[G] COG2376 Dihydroxyacetone kinase gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_410 CH60_4100 CH60_4100 CH60_4100 4529268 4529753 - transposase DDE domain protein gene gene4062 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4100 CH60_4101 CH60_4101 CH60_4101 4529946 4530308 - helix-turn-helix family protein [K] COG1396 Predicted transcriptional regulators gene gene4063 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4101 CH60_4102 CH60_4102 hth hth 4531304 4531489 + helix-turn-helix XRE family protein gene gene4064 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4102 CH60_4103 CH60_4103 CH60_4103 4532222 4532980 - ABC transporter family protein [P] COG4604 ABC-type enterochelin transport system%2C ATPase component gene gene4066 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4103 CH60_4104 CH60_4104 CH60_4104 4531662 4532225 + virulence RhuM family protein [R] COG3943 Virulence protein gene gene4065 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4104 CH60_4105 CH60_4105 CH60_4105 4532977 4533984 - fecCD transport family protein [P] COG4605 ABC-type enterochelin transport system%2C permease component gene gene4067 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4105 CH60_4106 CH60_4106 CH60_4106 4533974 4534933 - fecCD transport family protein [P] COG4606 ABC-type enterochelin transport system%2C permease component gene gene4068 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4106 CH60_4107 CH60_4107 CH60_4107 4534943 4535896 - periplasmic binding family protein [P] COG4607 ABC-type enterochelin transport system%2C periplasmic component gene gene4069 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4107 CH60_4108 CH60_4108 CH60_4108 4536419 4537663 - ATP-grasp domain protein [I] COG0439 Biotin carboxylase gene gene4070 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4108 CH60_4109 CH60_4109 CH60_4109 4537665 4538594 - eamA-like transporter family protein gene gene4071 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4109 CH60_411 CH60_411 CH60_411 429828 430829 - dak1 domain protein [G] COG2376 Dihydroxyacetone kinase gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_411 CH60_4110 CH60_4110 CH60_4110 4538677 4539243 - phosphoribosyl transferase domain protein [F] COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins gene gene4072 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4110 CH60_4111 CH60_4111 CH60_4111 4539240 4540184 - pyridoxal-phosphate dependent enzyme family protein [E] COG0031 Cysteine synthase gene gene4073 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4111 CH60_4112 CH60_4112 hutU hutU 4540911 4542602 + urocanate hydratase hutU: urocanate hydratase~[E] COG2987 Urocanate hydratase gene gene4074 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4112 CH60_4113 CH60_4113 hutH hutH 4542599 4544131 + histidine ammonia-lyase hutH: histidine ammonia-lyase~[E] COG2986 Histidine ammonia-lyase gene gene4075 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4113 CH60_4114 CH60_4114 CH60_4114 4544549 4544758 + amino acid permease family protein [E] COG1113 Gamma-aminobutyrate permease and related permeases gene gene4076 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4114 CH60_4115 CH60_4115 CH60_4115 4544785 4545807 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene4077 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4115 CH60_4116 CH60_4116 CH60_4116 4545807 4546586 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene4078 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4116 CH60_4117 CH60_4117 CH60_4117 4546625 4546960 + tatD related DNase family protein [L] COG0084 Mg-dependent DNase gene gene4079 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4117 CH60_4118 CH60_4118 CH60_4118 4546975 4547997 + delta-aminolevulinic acid dehydratase family protein [H] COG0113 Delta-aminolevulinic acid dehydratase gene gene4080 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4118 CH60_4119 CH60_4119 rfaH rfaH 4548107 4548595 - transcription elongation factor/antiterminator RfaH rfaH: transcription elongation factor/antiterminator RfaH~[K] COG0250 Transcription antiterminator gene gene4081 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4119 CH60_412 CH60_412 CH60_412 430916 431686 - short chain dehydrogenase family protein [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_412 CH60_4120 CH60_4120 CH60_4120 4548843 4550339 + decarboxylase%2C UbiD family protein [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases gene gene4082 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4120 CH60_4121 CH60_4121 CH60_4121 4550394 4551095 + oxidoreductase NAD-binding domain protein [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases gene gene4083 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4121 CH60_4122 CH60_4122 fadA fadA 4551255 4552418 - acetyl-CoA C-acyltransferase FadA fadA: acetyl-CoA C-acyltransferase FadA~[I] COG0183 Acetyl-CoA acetyltransferase gene gene4084 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4122 CH60_4123 CH60_4123 fadB fadB 4552430 4554619 - fatty oxidation complex%2C alpha subunit FadB fadB: fatty oxidation complex%2C alpha subunit FadB~[I] COG1250 3-hydroxyacyl-CoA dehydrogenase gene gene4085 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4123 CH60_4124 CH60_4124 CH60_4124 4554946 4556277 + metallopeptidase M24 family protein [E] COG0006 Xaa-Pro aminopeptidase gene gene4086 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4124 CH60_4125 CH60_4125 CH60_4125 4556277 4556888 + hypothetical protein conserved hypothetical protein~[S] COG1739 Uncharacterized conserved protein gene gene4087 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4125 CH60_4126 CH60_4126 CH60_4126 4556928 4558379 + potassium uptake%2C TrkH family protein 2a38: potassium uptake%2C TrkH family protein~[P] COG0168 Trk-type K+ transport systems%2C membrane components gene gene4088 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4126 CH60_4127 CH60_4127 CH60_4127 4558401 4558934 + flavodoxin domain protein [CH] COG4635 Flavodoxin gene gene4089 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4127 CH60_4128 CH60_4128 CH60_4128 4559415 4560945 + 16S ribosomal RNA rRNA gene4090 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4128 CH60_4129 CH60_4129 CH60_4129 4561087 4561162 + tRNA-Glu tRNA gene4091 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4129 CH60_413 CH60_413 CH60_413 431750 432865 - zinc-binding dehydrogenase family protein [ER] COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_413 CH60_4130 CH60_4130 CH60_4130 4561417 4564321 + 23S ribosomal RNA rRNA gene4092 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4130 CH60_4131 CH60_4131 CH60_4131 4564433 4564547 + 5S ribosomal RNA rRNA gene4093 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4131 CH60_4132 CH60_4132 murB murB 4565010 4566047 + UDP-N-acetylenolpyruvoylglucosamine reductase murB: UDP-N-acetylenolpyruvoylglucosamine reductase~[M] COG0812 UDP-N-acetylmuramate dehydrogenase gene gene4094 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4132 CH60_4133 CH60_4133 CH60_4133 4566044 4567003 + biotin operon repressor birA_repr_reg: biotin operon repressor~[H] COG0340 Biotin-(acetyl-CoA carboxylase) ligase gene gene4095 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4133 CH60_4134 CH60_4134 coaA coaA 4567038 4567988 - pantothenate kinase panK_bact: pantothenate kinase~[H] COG1072 Panthothenate kinase gene gene4096 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4134 CH60_4135 CH60_4135 CH60_4135 4568199 4568750 - acetyltransferase domain protein [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases gene gene4097 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4135 CH60_4136 CH60_4136 CH60_4136 4568840 4569862 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene4098 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4136 CH60_4137 CH60_4137 CH60_4137 4569862 4570641 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene4099 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4137 CH60_4138 CH60_4138 CH60_4138 4570657 4571193 + integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene4100 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4138 CH60_4139 CH60_4139 CH60_4139 4571982 4572446 - hypothetical protein conserved hypothetical protein gene gene4101 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4139 CH60_414 CH60_414 rpiB rpiB 433348 433803 + ribose 5-phosphate isomerase B rpiB: ribose 5-phosphate isomerase B~[G] COG0698 Ribose 5-phosphate isomerase RpiB gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_414 CH60_4140 CH60_4140 CH60_4140 4572755 4573129 - putative membrane protein gene gene4102 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4140 CH60_4141 CH60_4141 CH60_4141 4573528 4575042 + FAD dependent oxidoreductase family protein [C] COG0578 Glycerol-3-phosphate dehydrogenase gene gene4103 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4141 CH60_4142 CH60_4142 glgP glgP 4575205 4577652 - glycogen/starch/alpha-glucan phosphorylases family protein P_ylase: glycogen/starch/alpha-glucan phosphorylases family protein~[G] COG0058 Glucan phosphorylase gene gene4104 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4142 CH60_4143 CH60_4143 glgA glgA 4577805 4579235 - glycogen/starch synthase%2C ADP-glucose type family protein glgA: glycogen/starch synthase%2C ADP-glucose type family protein~[G] COG0297 Glycogen synthase gene gene4105 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4143 CH60_4144 CH60_4144 glgC glgC 4579303 4580733 - glucose-1-phosphate adenylyltransferase glgC: glucose-1-phosphate adenylyltransferase~[G] COG0448 ADP-glucose pyrophosphorylase gene gene4106 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4144 CH60_4145 CH60_4145 glgX glgX 4580743 4582731 - glycogen debranching enzyme GlgX glgX_debranch: glycogen debranching enzyme GlgX~[G] COG1523 Type II secretory pathway%2C pullulanase PulA and related glycosidases gene gene4107 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4145 CH60_4146 CH60_4146 glgB glgB 4582733 4584916 - 1%2C4-alpha-glucan branching enzyme branching_enzym: 1%2C4-alpha-glucan branching enzyme~[G] COG0296 1%2C4-alpha-glucan branching enzyme gene gene4108 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4146 CH60_4147 CH60_4147 CH60_4147 4585422 4587119 + histidine kinase family protein [T] COG3275 Putative regulator of cell autolysis gene gene4109 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4147 CH60_4148 CH60_4148 CH60_4148 4587327 4597814 - bacterial Ig-like domain family protein gene gene4110 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4148 CH60_4149 CH60_4149 CH60_4149 4599249 4599392 - hypothetical protein conserved hypothetical protein gene gene4111 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4149 CH60_415 CH60_415 mutS mutS 434578 437133 + DNA mismatch repair protein MutS mutS1: DNA mismatch repair protein MutS~[L] COG0249 Mismatch repair ATPase (MutS family) gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_415 CH60_4150 CH60_4150 CH60_4150 4599550 4599837 - hypothetical protein conserved hypothetical protein gene gene4112 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4150 CH60_4151 CH60_4151 CH60_4151 4599844 4600152 - hypothetical protein conserved hypothetical protein gene gene4113 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4151 CH60_4152 CH60_4152 CH60_4152 4600459 4600740 - hypothetical protein conserved hypothetical protein gene gene4114 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4152 CH60_4153 CH60_4153 asd asd 4600909 4602012 - aspartate-semialdehyde dehydrogenase asd_gamma: aspartate-semialdehyde dehydrogenase~[E] COG0136 Aspartate-semialdehyde dehydrogenase gene gene4115 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4153 CH60_4154 CH60_4154 CH60_4154 4602370 4602963 + hypothetical protein conserved hypothetical protein~[U] COG2095 Multiple antibiotic transporter gene gene4116 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4154 CH60_4155 CH60_4155 CH60_4155 4603203 4603592 - hypothetical protein conserved hypothetical protein gene gene4117 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4155 CH60_4156 CH60_4156 CH60_4156 4603647 4603787 - hypothetical protein conserved hypothetical protein gene gene4118 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4156 CH60_4157 CH60_4157 CH60_4157 4603978 4604211 - hypothetical protein conserved hypothetical protein gene gene4119 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4157 CH60_4158 CH60_4158 CH60_4158 4604393 4604896 - carbohydrate kinase%2C thermoresistant glucokinase family protein therm_gnt_kin: carbohydrate kinase%2C thermoresistant glucokinase family protein~[G] COG3265 Gluconate kinase gene gene4120 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4158 CH60_4159 CH60_4159 CH60_4159 4605113 4606429 + transporter%2C gluconate:H+ symporter family protein gntP: transporter%2C gluconate:H+ symporter family protein~[GE] COG2610 H+/gluconate symporter and related permeases gene gene4121 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4159 CH60_416 CH60_416 rpoS rpoS 437461 438459 - RNA polymerase sigma factor RpoS rpoS_proteo: RNA polymerase sigma factor RpoS~[K] COG0568 DNA-directed RNA polymerase%2C sigma subunit (sigma70/sigma32) gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_416 CH60_4160 CH60_4160 gntR gntR 4606521 4607459 - HTH-type transcriptional regulator gntR [K] COG1609 Transcriptional regulators gene gene4122 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4160 CH60_4161 CH60_4161 CH60_4161 72 869 - hypothetical protein conserved hypothetical protein~[R] COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily gene gene4215 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4161 CH60_4162 CH60_4162 CH60_4162 862 1560 - phage minor tail protein L phage_tail_L: phage minor tail protein L~[S] COG4672 Phage-related protein gene gene4216 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4162 CH60_4163 CH60_4163 CH60_4163 1650 1985 - phage minor tail family protein [S] COG4718 Phage-related protein gene gene4217 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4163 CH60_4164 CH60_4164 CH60_4164 2027 6604 - tape measure domain protein tape_meas_nterm: tape measure domain protein~[S] COG5281 Phage-related minor tail protein gene gene4218 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4164 CH60_4165 CH60_4165 CH60_4165 6612 6845 - hypothetical protein conserved hypothetical protein gene gene4219 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4165 CH60_4166 CH60_4166 CH60_4166 6962 7279 - hypothetical protein conserved hypothetical protein gene gene4220 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4166 CH60_4167 CH60_4167 CH60_4167 7339 8085 - bacterial Ig-like domain family protein [N] COG5492 Bacterial surface proteins containing Ig-like domains gene gene4221 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4167 CH60_4168 CH60_4168 CH60_4168 8160 8543 - hypothetical protein conserved hypothetical protein gene gene4222 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4168 CH60_4169 CH60_4169 CH60_4169 8545 9018 - hypothetical protein conserved hypothetical protein gene gene4223 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4169 CH60_417 CH60_417 CH60_417 438514 439497 - lysM domain protein [M] COG0739 Membrane proteins related to metalloendopeptidases gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_417 CH60_4170 CH60_4170 CH60_4170 9009 9353 - hypothetical protein conserved hypothetical protein gene gene4224 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4170 CH60_4171 CH60_4171 CH60_4171 9451 10284 - hypothetical protein conserved hypothetical protein gene gene4225 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4171 CH60_4172 CH60_4172 CH60_4172 10284 10718 - hypothetical protein conserved hypothetical protein gene gene4226 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4172 CH60_4173 CH60_4173 CH60_4173 10762 11424 - bacterial Ig-like domain family protein [N] COG5492 Bacterial surface proteins containing Ig-like domains gene gene4227 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4173 CH60_4174 CH60_4174 CH60_4174 11499 12374 - hypothetical protein conserved hypothetical protein gene gene4228 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4174 CH60_4175 CH60_4175 CH60_4175 12401 13297 - hypothetical protein conserved hypothetical protein gene gene4229 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4175 CH60_4176 CH60_4176 CH60_4176 13320 14894 - hypothetical protein conserved hypothetical protein gene gene4230 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4176 CH60_4177 CH60_4177 CH60_4177 14928 16184 - phage terminase large subunit gene gene4231 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4177 CH60_4178 CH60_4178 CH60_4178 16187 16828 - putative dNA-binding protein gene gene4232 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4178 CH60_4179 CH60_4179 CH60_4179 17024 17290 - hypothetical protein conserved hypothetical protein gene gene4233 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4179 CH60_418 CH60_418 pcm pcm 439619 440245 - protein-L-isoaspartate O-methyltransferase pimt: protein-L-isoaspartate O-methyltransferase~[O] COG2518 Protein-L-isoaspartate carboxylmethyltransferase gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_418 CH60_4180 CH60_4180 CH60_4180 17300 18190 - hypothetical protein conserved hypothetical protein~[R] COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain gene gene4234 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4180 CH60_4181 CH60_4181 CH60_4181 18196 18450 - hypothetical protein conserved hypothetical protein gene gene4235 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4181 CH60_4182 CH60_4182 CH60_4182 18443 19081 - ABC transporter family protein [R] COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain gene gene4236 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4182 CH60_4183 CH60_4183 CH60_4183 19078 19746 - parB-like nuclease domain protein [K] COG1475 Predicted transcriptional regulators gene gene4237 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4183 CH60_4184 CH60_4184 CH60_4184 19746 20426 - parB-like nuclease domain protein [K] COG1475 Predicted transcriptional regulators gene gene4238 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4184 CH60_4185 CH60_4185 CH60_4185 20509 22068 + DEAD/DEAH box helicase family protein [KL] COG1061 DNA or RNA helicases of superfamily II gene gene4239 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4185 CH60_4186 CH60_4186 CH60_4186 22071 22349 + hypothetical protein conserved hypothetical protein gene gene4240 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4186 CH60_4187 CH60_4187 CH60_4187 22409 22831 + putative lipoprotein gene gene4241 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4187 CH60_4188 CH60_4188 CH60_4188 22836 23363 + repressor of phase-1 flagellin family protein gene gene4242 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4188 CH60_4189 CH60_4189 CH60_4189 23687 24337 + hypothetical protein conserved hypothetical protein gene gene4243 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4189 CH60_419 CH60_419 surE surE 440239 441003 - 5'/3'-nucleotidase SurE surE: 5'/3'-nucleotidase SurE~[R] COG0496 Predicted acid phosphatase gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_419 CH60_4190 CH60_4190 CH60_4190 24422 24649 + hypothetical protein conserved hypothetical protein gene gene4244 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4190 CH60_4191 CH60_4191 CH60_4191 25288 25770 - hypothetical protein conserved hypothetical protein gene gene4245 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4191 CH60_4192 CH60_4192 CH60_4192 25783 25959 - hypothetical protein conserved hypothetical protein gene gene4246 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4192 CH60_4193 CH60_4193 CH60_4193 25976 26257 - hypothetical protein conserved hypothetical protein gene gene4247 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4193 CH60_4194 CH60_4194 CH60_4194 26457 26915 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene4248 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4194 CH60_4195 CH60_4195 CH60_4195 27154 27951 - phosphoribosyl-ATP pyrophosphohydrolase family protein gene gene4249 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4195 CH60_4196 CH60_4196 CH60_4196 28108 29250 - ribonucleotide reductase%2C small chain family protein [F] COG0208 Ribonucleotide reductase%2C beta subunit gene gene4250 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4196 CH60_4197 CH60_4197 CH60_4197 29358 31673 - ribonucleoside-diphosphate reductase%2C alpha subunit nrdE_NrdA: ribonucleoside-diphosphate reductase%2C alpha subunit~[F] COG0209 Ribonucleotide reductase%2C alpha subunit gene gene4251 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4197 CH60_4198 CH60_4198 CH60_4198 31751 32320 - hypothetical protein conserved hypothetical protein gene gene4252 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4198 CH60_4199 CH60_4199 CH60_4199 32333 33079 - hypothetical protein conserved hypothetical protein gene gene4253 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4199 CH60_42 CH60_42 CH60_42 53675 54751 - hypothetical protein oligo_HPY: oligopeptide/dipeptide ABC transporter%2C ATP-binding%2C C-terminal domain protein~[E] COG4608 ABC-type oligopeptide transport system%2C ATPase component gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_42 CH60_420 CH60_420 CH60_420 440981 442030 - tRNA pseudouridine synthase%2C TruD family protein tRNA_TruD_broad: tRNA pseudouridine synthase%2C TruD family protein~[S] COG0585 Uncharacterized conserved protein gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_420 CH60_4200 CH60_4200 CH60_4200 33069 34985 - ABC transporter family protein [L] COG0419 ATPase involved in DNA repair gene gene4254 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4200 CH60_4201 CH60_4201 CH60_4201 34994 35143 - hypothetical protein conserved hypothetical protein gene gene4255 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4201 CH60_4202 CH60_4202 CH60_4202 35215 36300 - calcineurin-like phosphoesterase family protein [L] COG0420 DNA repair exonuclease gene gene4256 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4202 CH60_4203 CH60_4203 CH60_4203 36716 37738 + bacterial extracellular solute-binding s%2C 3 family protein [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems%2C periplasmic components gene gene4257 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4203 CH60_4204 CH60_4204 CH60_4204 38098 38568 - hypothetical protein conserved hypothetical protein gene gene4258 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4204 CH60_4205 CH60_4205 repB repB 39507 40571 + repFIB replication protein A gene gene4259 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4205 CH60_4206 CH60_4206 CH60_4206 41140 41352 - hypothetical protein conserved hypothetical protein gene gene4260 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4206 CH60_4207 CH60_4207 CH60_4207 41352 41687 - putative periplasmic protein gene gene4261 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4207 CH60_4208 CH60_4208 CH60_4208 41904 42179 - hypothetical protein conserved hypothetical protein gene gene4262 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4208 CH60_4209 CH60_4209 CH60_4209 42247 42657 - hypothetical protein conserved hypothetical protein gene gene4263 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4209 CH60_421 CH60_421 ispF ispF 442041 442529 - 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase [I] COG0245 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_421 CH60_4210 CH60_4210 CH60_4210 42641 43012 - hypothetical protein conserved hypothetical protein gene gene4264 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4210 CH60_4211 CH60_4211 CH60_4211 43166 43996 - SPFH domain / Band 7 family protein [O] COG0330 Membrane protease subunits%2C stomatin/prohibitin homologs gene gene4265 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4211 CH60_4212 CH60_4212 CH60_4212 44000 44200 - putative membrane protein gene gene4266 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4212 CH60_4213 CH60_4213 CH60_4213 44291 45367 - recA bacterial DNA recombination family protein [L] COG0468 RecA/RadA recombinase gene gene4267 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4213 CH60_4214 CH60_4214 CH60_4214 45370 45636 - hypothetical protein gene gene4268 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4214 CH60_4215 CH60_4215 CH60_4215 45636 46580 - hypothetical protein 5'-3' exonuclease%2C C-terminal SAM fold family protein~[L] COG0258 5'-3' exonuclease (including N-terminal domain of PolI) gene gene4269 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4215 CH60_4216 CH60_4216 CH60_4216 46641 47669 - hypothetical protein conserved hypothetical protein gene gene4270 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4216 CH60_4217 CH60_4217 CH60_4217 47789 48220 - hypothetical protein conserved hypothetical protein gene gene4271 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4217 CH60_4218 CH60_4218 CH60_4218 48441 48692 + hypothetical protein conserved hypothetical protein gene gene4272 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4218 CH60_4219 CH60_4219 CH60_4219 48765 49328 + putative dNA-binding protein gene gene4273 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4219 CH60_422 CH60_422 ispD ispD 442668 443393 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase~[I] COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_422 CH60_4220 CH60_4220 CH60_4220 49358 49801 - hypothetical protein conserved hypothetical protein gene gene4274 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4220 CH60_4221 CH60_4221 CH60_4221 49798 50589 - uracil DNA glycosylase superfamily protein gene gene4275 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4221 CH60_4222 CH60_4222 CH60_4222 50712 51266 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene4276 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4222 CH60_4223 CH60_4223 CH60_4223 51220 51948 + hypothetical protein conserved hypothetical protein~[L] COG4584 Transposase and inactivated derivatives gene gene4277 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4223 CH60_4224 CH60_4224 CH60_4224 51927 52514 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene4278 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4224 CH60_4225 CH60_4225 dnaE dnaE 52565 55282 - DNA polymerase III%2C alpha subunit polc: DNA polymerase III%2C alpha subunit~[L] COG0587 DNA polymerase III%2C alpha subunit gene gene4279 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4225 CH60_4226 CH60_4226 CH60_4226 55463 56698 - AAA domain family protein [R] COG0714 MoxR-like ATPases gene gene4280 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4226 CH60_4227 CH60_4227 CH60_4227 56795 59161 - cobalamin biosynthesis CobT family protein [H] COG4547 Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5%2C 6-dimethylbenzimidazole phosphoribosyltransferase) gene gene4281 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4227 CH60_4228 CH60_4228 CH60_4228 59271 59483 - hypothetical protein conserved hypothetical protein gene gene4282 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4228 CH60_4229 CH60_4229 CH60_4229 60127 61230 - phage integrase family protein [L] COG0582 Integrase gene gene4284 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4229 CH60_423 CH60_423 CH60_423 443397 443717 - septum formation initiator family protein [D] COG2919 Septum formation initiator gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_423 CH60_4230 CH60_4230 CH60_4230 59746 60132 + hypothetical protein conserved hypothetical protein gene gene4283 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4230 CH60_4231 CH60_4231 caf1 caf1 61991 62503 - F1 capsule antigen gene gene4285 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4231 CH60_4232 CH60_4232 caf1A caf1A 62584 65085 - F1 capsule-anchoring protein [NU] COG3188 P pilus assembly protein%2C porin PapC gene gene4286 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4232 CH60_4233 CH60_4233 caf1M caf1M 65110 65886 - chaperone protein caf1M [NU] COG3121 P pilus assembly protein%2C chaperone PapD gene gene4287 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4233 CH60_4234 CH60_4234 CH60_4234 66358 67119 + helix-turn-helix domain protein [K] COG2207 AraC-type DNA-binding domain-containing proteins gene gene4288 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4234 CH60_4235 CH60_4235 CH60_4235 67634 67939 - putative c-type natriuretic protein gene gene4289 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4235 CH60_4236 CH60_4236 CH60_4236 67936 68088 - hypothetical protein conserved hypothetical protein gene gene4290 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4236 CH60_4237 CH60_4237 CH60_4237 68085 68300 - hypothetical protein conserved hypothetical protein gene gene4291 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4237 CH60_4238 CH60_4238 CH60_4238 68284 68460 - hypothetical protein conserved hypothetical protein gene gene4292 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4238 CH60_4239 CH60_4239 CH60_4239 68460 69782 - ATP dependent DNA ligase domain protein gene gene4293 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4239 CH60_424 CH60_424 CH60_424 444032 444349 - hypothetical protein conserved hypothetical protein gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_424 CH60_4240 CH60_4240 CH60_4240 69817 70293 - hypothetical protein conserved hypothetical protein gene gene4294 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4240 CH60_4241 CH60_4241 CH60_4241 70375 70617 - hypothetical protein conserved hypothetical protein gene gene4295 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4241 CH60_4242 CH60_4242 CH60_4242 70633 71412 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene4296 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4242 CH60_4243 CH60_4243 CH60_4243 71412 72434 - helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene4297 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4243 CH60_4244 CH60_4244 CH60_4244 72558 74567 - parB-like nuclease domain protein [K] COG1475 Predicted transcriptional regulators gene gene4298 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4244 CH60_4245 CH60_4245 CH60_4245 74640 74870 - hypothetical protein conserved hypothetical protein gene gene4299 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4245 CH60_4246 CH60_4246 CH60_4246 75659 76165 - antirestriction family protein [R] COG4734 Antirestriction protein gene gene4300 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4246 CH60_4247 CH60_4247 CH60_4247 76564 77343 - putative ychA gene gene4301 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4247 CH60_4248 CH60_4248 CH60_4248 77397 77816 - hypothetical protein conserved hypothetical protein gene gene4302 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4248 CH60_4249 CH60_4249 CH60_4249 77827 78048 - hypothetical protein conserved hypothetical protein gene gene4303 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4249 CH60_425 CH60_425 cysC cysC 444540 445244 - adenylyl-sulfate kinase apsK: adenylyl-sulfate kinase~[P] COG0529 Adenylylsulfate kinase and related kinases gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_425 CH60_4250 CH60_4250 CH60_4250 78048 78725 - DNA methylase family protein [L] COG0863 DNA modification methylase gene gene4304 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4250 CH60_4251 CH60_4251 CH60_4251 79226 79426 + hypothetical protein gene gene4305 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4251 CH60_4252 CH60_4252 CH60_4252 79588 80979 - archaeal ATPase family protein [R] COG1672 Predicted ATPase (AAA+ superfamily) gene gene4306 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4252 CH60_4253 CH60_4253 CH60_4253 81364 82335 - ParB/RepB/Spo0J family partition domain protein parB_part: ParB/RepB/Spo0J family partition domain protein~[K] COG1475 Predicted transcriptional regulators gene gene4307 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4253 CH60_4254 CH60_4254 parA parA 82332 83537 - plasmid partition protein A [D] COG1192 ATPases involved in chromosome partitioning gene gene4308 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4254 CH60_4255 CH60_4255 CH60_4255 83839 84066 + antitoxin Phd YefM%2C type II toxin-antitoxin system family protein gene gene4309 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4255 CH60_4256 CH60_4256 CH60_4256 84066 84392 + plasmid stabilization system family protein [R] COG3668 Plasmid stabilization system protein gene gene4310 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4256 CH60_4257 CH60_4257 CH60_4257 84592 85212 + hypothetical protein resolvase%2C N terminal domain protein~[L] COG1961 Site-specific recombinases%2C DNA invertase Pin homologs gene gene4311 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4257 CH60_4258 CH60_4258 CH60_4258 85278 86219 + hypothetical protein T_den_put_tspse: conserved hypothetical family protein~[S] COG5464 Uncharacterized conserved protein gene gene4312 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4258 CH60_4259 CH60_4259 CH60_4259 86242 86517 - hypothetical protein gene gene4313 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4259 CH60_426 CH60_426 cysN cysN 445183 446700 - sulfate adenylyltransferase%2C large subunit cysN: sulfate adenylyltransferase%2C large subunit~[P] COG2895 GTPases - Sulfate adenylate transferase subunit 1 gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_426 CH60_4260 CH60_4260 CH60_4260 87150 88913 + phospholipase D family protein gene gene4314 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4260 CH60_4261 CH60_4261 CH60_4261 90989 92011 - transposase family protein [L] COG3547 Transposase and inactivated derivatives gene gene4315 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4261 CH60_4262 CH60_4262 CH60_4262 92480 93688 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene4316 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4262 CH60_4263 CH60_4263 CH60_4263 93722 94444 - hypothetical protein conserved hypothetical protein gene gene4317 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4263 CH60_4264 CH60_4264 CH60_4264 94697 95377 + hypothetical protein conserved hypothetical protein gene gene4318 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4264 CH60_4265 CH60_4265 CH60_4265 95391 96413 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene4319 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4265 CH60_4266 CH60_4266 CH60_4266 96413 97192 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene4320 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4266 CH60_4267 CH60_4267 CH60_4267 97322 97930 - caudovirales tail fiber assembly family protein gene gene4321 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4267 CH60_4268 CH60_4268 CH60_4268 98023 98235 - hypothetical protein conserved hypothetical protein gene gene4322 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4268 CH60_4269 CH60_4269 CH60_4269 98232 101120 - phage tail fiber repeat family protein gene gene4323 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4269 CH60_427 CH60_427 cysD cysD 446712 447620 - sulfate adenylyltransferase%2C small subunit cysD: sulfate adenylyltransferase%2C small subunit~[EH] COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_427 CH60_4270 CH60_4270 CH60_4270 101201 101818 - hypothetical protein conserved hypothetical protein gene gene4324 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4270 CH60_4271 CH60_4271 CH60_4271 101836 106467 - fibronectin type III domain protein [S] COG4733 Phage-related protein%2C tail component gene gene4325 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4271 CH60_4272 CH60_4272 CH60_4272 106489 106941 - putative phage tail assembly protein [S] COG4723 Phage-related protein%2C tail component gene gene4326 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4272 CH60_4273 CH60_4273 CH60_4273 17 898 - type III secretion regulator YopN/LcrE/InvE/MxiC lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC gene gene4123 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4273 CH60_4274 CH60_4274 CH60_4274 1096 2415 + type III secretion apparatus H+-transporting two-sector ATPase III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase~[NU] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase gene gene4124 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4274 CH60_4275 CH60_4275 CH60_4275 2412 2876 + type III secretion YscO family protein gene gene4125 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4275 CH60_4276 CH60_4276 CH60_4276 2876 4243 + type III secretion system needle length determinant type_III_yscP: type III secretion system needle length determinant gene gene4126 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4276 CH60_4277 CH60_4277 epaO epaO 4240 5163 + type III secretion apparatus protein%2C YscQ/HrcQ family spaO_YscQ: type III secretion apparatus protein%2C YscQ/HrcQ family~[NU] COG1886 Flagellar motor switch/type III secretory pathway protein gene gene4127 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4277 CH60_4278 CH60_4278 epaP epaP 5160 5813 + type III secretion apparatus protein%2C YscR/HrcR family yscR: type III secretion apparatus protein%2C YscR/HrcR family~[U] COG4790 Type III secretory pathway%2C component EscR gene gene4128 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4278 CH60_4279 CH60_4279 CH60_4279 5815 6081 + type III secretion%2C HrpO family protein fliQ_rel_III: type III secretion%2C HrpO family protein~[U] COG4794 Type III secretory pathway%2C component EscS gene gene4129 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4279 CH60_428 CH60_428 cobA cobA 447631 449049 - uroporphyrinogen-III C-methyltransferase cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase~[H] COG0007 Uroporphyrinogen-III methylase gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_428 CH60_4280 CH60_4280 epaR epaR 6078 6863 + type III secretion apparatus protein SpaR/YscT/HrcT fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT~[U] COG4791 Type III secretory pathway%2C component EscT gene gene4130 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4280 CH60_4281 CH60_4281 yscU yscU 6863 7927 + yop s translocation protein U [U] COG4792 Type III secretory pathway%2C component EscU gene gene4131 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4281 CH60_4282 CH60_4282 CH60_4282 8503 8898 + type III secretion system chaperone YscW yscW: type III secretion system chaperone YscW gene gene4132 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4282 CH60_4283 CH60_4283 CH60_4283 9022 9837 + helix-turn-helix domain protein [K] COG2207 AraC-type DNA-binding domain-containing proteins gene gene4133 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4283 CH60_4284 CH60_4284 CH60_4284 10240 10653 + type III secretion system chaperone%2C YscB family type_III_yscB: type III secretion system chaperone%2C YscB family gene gene4134 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4284 CH60_4285 CH60_4285 CH60_4285 10659 12482 + type III secretion outer membrane pore%2C YscC/HrcC family type_III_yscC: type III secretion outer membrane pore%2C YscC/HrcC family~[NU] COG1450 Type II secretory pathway%2C component PulD gene gene4135 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4285 CH60_4286 CH60_4286 CH60_4286 12479 13738 + type III secretion apparatus protein%2C YscD/HrpQ family type_III_yscD: type III secretion apparatus protein%2C YscD/HrpQ family gene gene4136 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4286 CH60_4287 CH60_4287 CH60_4287 13735 13935 + hypothetical protein conserved hypothetical protein gene gene4137 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4287 CH60_4288 CH60_4288 eprI eprI 13936 14199 + type III secretion apparatus needle protein III_needle: type III secretion apparatus needle protein gene gene4138 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4288 CH60_4289 CH60_4289 CH60_4289 14201 14548 + type III secretion protein%2C YscG family type_III_yscG: type III secretion protein%2C YscG family gene gene4139 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4289 CH60_429 CH60_429 CH60_429 449350 449616 - hypothetical protein gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_429 CH60_4290 CH60_4290 CH60_4290 14545 15042 + type III secretion effector%2C YopR family type_III_yopR: type III secretion effector%2C YopR family gene gene4140 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4290 CH60_4291 CH60_4291 CH60_4291 15043 15390 + hypothetical protein yscI_hrpB_dom: type III secretion apparatus protein%2C YscI/HrpB%2C C-terminal domain gene gene4141 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4291 CH60_4292 CH60_4292 CH60_4292 15436 16131 + type III secretion apparatus lipoprotein%2C YscJ/HrcJ family III_secr_YscJ: type III secretion apparatus lipoprotein%2C YscJ/HrcJ family~[U] COG4669 Type III secretory pathway%2C lipoprotein EscJ gene gene4142 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4292 CH60_4293 CH60_4293 CH60_4293 16134 16760 + YOP s translocation K family protein gene gene4143 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4293 CH60_4294 CH60_4294 CH60_4294 16739 17371 + type III secretion apparatus protein%2C HrpE/YscL family hrpE_YscL_not: type III secretion apparatus protein%2C HrpE/YscL family~[NU] COG1317 Flagellar biosynthesis/type III secretory pathway protein gene gene4144 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4294 CH60_4295 CH60_4295 yscM2 yscM2 17596 17943 + regulatory protein YscM2 gene gene4145 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4295 CH60_4296 CH60_4296 CH60_4296 18491 18757 + transposase family protein [L] COG2801 Transposase and inactivated derivatives gene gene4146 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4296 CH60_4297 CH60_4297 CH60_4297 18793 19215 + putative transposase insK for insertion sequence element IS150 [L] COG2801 Transposase and inactivated derivatives gene gene4147 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4297 CH60_4298 CH60_4298 CH60_4298 19212 19520 + integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene4148 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4298 CH60_4299 CH60_4299 yopH yopH 20032 21438 - tyrosine-protein phosphatase yopH gene gene4149 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4299 CH60_43 CH60_43 CH60_43 54748 55728 - hypothetical protein oligo_HPY: oligopeptide/dipeptide ABC transporter%2C ATP-binding%2C C-terminal domain protein~[EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system%2C ATPase component gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_43 CH60_430 CH60_430 CH60_430 449640 449840 + ycfA-like family protein [N] COG1724 Predicted periplasmic or secreted lipoprotein gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_430 CH60_4300 CH60_4300 CH60_4300 22059 22535 + integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene4150 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4300 CH60_4301 CH60_4301 yopJ yopJ 23150 23986 - effector protein yopJ gene gene4151 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4301 CH60_4302 CH60_4302 ypkA ypkA 24382 26580 - protein kinase ypkA [RTKL] COG0515 Serine/threonine protein kinase gene gene4152 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4302 CH60_4303 CH60_4303 CH60_4303 26588 27037 - tir chaperone family protein gene gene4153 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4303 CH60_4304 CH60_4304 CH60_4304 27199 27309 + putative iSEhe3 transposase A [L] COG2963 Transposase and inactivated derivatives gene gene4154 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4304 CH60_4305 CH60_4305 CH60_4305 27333 27527 - integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene4155 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4305 CH60_4306 CH60_4306 CH60_4306 27562 27789 - hypothetical protein conserved hypothetical protein gene gene4156 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4306 CH60_4307 CH60_4307 CH60_4307 28063 28212 - hypothetical protein gene gene4157 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4307 CH60_4308 CH60_4308 repA repA 29195 30061 - incFII family plasmid replication initiator RepA incFII_RepA: incFII family plasmid replication initiator RepA gene gene4158 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4308 CH60_4309 CH60_4309 CH60_4309 30370 30624 - replication regulatory RepB family protein gene gene4159 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4309 CH60_431 CH60_431 CH60_431 450015 450422 + hypothetical protein conserved hypothetical protein~[S] COG1598 Uncharacterized conserved protein gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_431 CH60_4310 CH60_4310 CH60_4310 31427 31834 - HTH-like domain protein [L] COG2801 Transposase and inactivated derivatives gene gene4161 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4310 CH60_4311 CH60_4311 CH60_4311 31262 31555 + integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene4160 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4311 CH60_4312 CH60_4312 CH60_4312 31858 32175 - transposase family protein [L] COG2963 Transposase and inactivated derivatives gene gene4162 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4312 CH60_4313 CH60_4313 CH60_4313 32347 32583 - hypothetical protein conserved hypothetical protein~[L] COG0507 ATP-dependent exoDNAse (exonuclease V)%2C alpha subunit - helicase superfamily I member gene gene4163 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4313 CH60_4314 CH60_4314 CH60_4314 32997 33143 + putative iSPsy24 transposase [L] COG2963 Transposase and inactivated derivatives gene gene4164 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4314 CH60_4315 CH60_4315 yadA yadA 33469 34404 - adhesin yadA [UW] COG5295 Autotransporter adhesin gene gene4165 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4315 CH60_4316 CH60_4316 CH60_4316 34350 34478 - hypothetical protein gene gene4166 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4316 CH60_4317 CH60_4317 yadA yadA 34521 34772 - adhesin yadA gene gene4167 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4317 CH60_4318 CH60_4318 CH60_4318 35755 38070 - tn3 transposase DDE domain protein [L] COG4644 Transposase and inactivated derivatives%2C TnpA family gene gene4169 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4318 CH60_4319 CH60_4319 CH60_4319 35378 35758 + putative transposase [L] COG2801 Transposase and inactivated derivatives gene gene4168 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4319 CH60_432 CH60_432 CH60_432 450665 450949 - phosphoadenosine phosphosulfate reductase family protein [EH] COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_432 CH60_4320 CH60_4320 tnpR tnpR 38234 38785 + transposon gamma-delta resolvase [L] COG1961 Site-specific recombinases%2C DNA invertase Pin homologs gene gene4170 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4320 CH60_4321 CH60_4321 CH60_4321 38804 39268 + hypothetical protein conserved hypothetical protein gene gene4171 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4321 CH60_4322 CH60_4322 CH60_4322 39407 39736 + hypothetical protein gene gene4172 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4322 CH60_4323 CH60_4323 CH60_4323 39836 40102 + transposase family protein [L] COG2801 Transposase and inactivated derivatives gene gene4173 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4323 CH60_4324 CH60_4324 CH60_4324 40183 40935 + integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene4174 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4324 CH60_4325 CH60_4325 CH60_4325 41083 41508 - tir chaperone family protein gene gene4175 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4325 CH60_4326 CH60_4326 CH60_4326 41851 42282 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene4176 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4326 CH60_4327 CH60_4327 CH60_4327 42471 43073 + hypothetical protein gene gene4177 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4327 CH60_4328 CH60_4328 CH60_4328 43428 43871 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene4178 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4328 CH60_4329 CH60_4329 CH60_4329 43993 44205 - putative transposition helper domain protein [L] COG1484 DNA replication protein gene gene4179 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4329 CH60_433 CH60_433 CH60_433 450924 451391 - phosphoadenosine phosphosulfate reductase family protein [EH] COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_433 CH60_4330 CH60_4330 CH60_4330 44482 45225 - helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene4181 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4330 CH60_4331 CH60_4331 CH60_4331 44225 44485 + hypothetical protein gene gene4180 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4331 CH60_4332 CH60_4332 CH60_4332 45239 45409 - putative transposase [S] COG4913 Uncharacterized protein conserved in bacteria gene gene4182 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4332 CH60_4333 CH60_4333 CH60_4333 45542 46156 + integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene4183 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4333 CH60_4334 CH60_4334 yerA yerA 46219 46611 - yopE regulator gene gene4184 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4334 CH60_4335 CH60_4335 yopE yopE 47000 47464 + outer membrane virulence protein yopE gene gene4185 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4335 CH60_4336 CH60_4336 CH60_4336 47604 47903 - plasmid stabilization system family protein [R] COG3668 Plasmid stabilization system protein gene gene4186 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4336 CH60_4337 CH60_4337 CH60_4337 47896 48138 - hypothetical protein conserved hypothetical protein~[K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain gene gene4187 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4337 CH60_4338 CH60_4338 CH60_4338 48984 49277 - hypothetical protein conserved hypothetical protein gene gene4188 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4338 CH60_4339 CH60_4339 sopB sopB 49400 50365 - protein sopB [K] COG1475 Predicted transcriptional regulators gene gene4189 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4339 CH60_434 CH60_434 cysI cysI 451388 453118 - sulfite reductase (NADPH) hemoprotein%2C beta-component cysI: sulfite reductase (NADPH) hemoprotein%2C beta-component~[P] COG0155 Sulfite reductase%2C beta subunit (hemoprotein) gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_434 CH60_4340 CH60_4340 CH60_4340 50362 51528 - merR HTH regulatory family protein [D] COG1192 ATPases involved in chromosome partitioning gene gene4190 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4340 CH60_4341 CH60_4341 CH60_4341 52144 52275 + site-specific recombinase%2C phage integrase family [L] COG2801 Transposase and inactivated derivatives gene gene4191 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4341 CH60_4342 CH60_4342 CH60_4342 52328 52522 - integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene4192 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4342 CH60_4343 CH60_4343 CH60_4343 52634 53092 - HTH-like domain protein [L] COG2801 Transposase and inactivated derivatives gene gene4193 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4343 CH60_4344 CH60_4344 CH60_4344 53116 53433 - transposase family protein [L] COG2963 Transposase and inactivated derivatives gene gene4194 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4344 CH60_4345 CH60_4345 CH60_4345 53540 54157 - enterobacterial TraT complement resistance family protein gene gene4195 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4345 CH60_4346 CH60_4346 CH60_4346 54767 55315 - putative protein yopQ gene gene4196 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4346 CH60_4347 CH60_4347 yopT yopT 55815 56783 + cysteine protease yopT gene gene4197 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4347 CH60_4348 CH60_4348 sycT sycT 56783 57181 + chaperone protein sycT gene gene4198 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4348 CH60_4349 CH60_4349 CH60_4349 57225 57536 - hypothetical protein conserved hypothetical protein gene gene4199 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4349 CH60_435 CH60_435 CH60_435 453118 454956 - sulfite reductase [NADPH] flavoprotein%2C alpha-component cysJ: sulfite reductase [NADPH] flavoprotein%2C alpha-component~[P] COG0369 Sulfite reductase%2C alpha subunit (flavoprotein) gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_435 CH60_4350 CH60_4350 CH60_4350 57886 58305 + hypothetical protein conserved hypothetical protein gene gene4200 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4350 CH60_4351 CH60_4351 CH60_4351 59283 59498 + transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene4201 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4351 CH60_4352 CH60_4352 yopM yopM 59541 60644 - outer membrane protein yopM [S] COG4886 Leucine-rich repeat (LRR) protein gene gene4202 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4352 CH60_4353 CH60_4353 CH60_4353 61227 61382 + putative transposase gene gene4203 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4353 CH60_4354 CH60_4354 CH60_4354 61416 61739 + DDE domain protein [L] COG3316 Transposase and inactivated derivatives gene gene4204 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4354 CH60_4355 CH60_4355 yopD yopD 62373 63293 - protein yopD gene gene4205 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4355 CH60_4356 CH60_4356 yopB yopB 63312 64517 - protein yopB [S] COG5613 Uncharacterized conserved protein gene gene4206 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4356 CH60_4357 CH60_4357 CH60_4357 64495 65001 - type III secretion low calcium response chaperone LcrH/SycD lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD~[R] COG0457 FOG: TPR repeat gene gene4207 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4357 CH60_4358 CH60_4358 lcrV lcrV 65014 65994 - virulence-associated V antigen gene gene4208 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4358 CH60_4359 CH60_4359 CH60_4359 65996 66283 - type III secretion protein LcrG lcrG_PcrG: type III secretion protein LcrG gene gene4209 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4359 CH60_436 CH60_436 queD queD 455349 455708 + queuosine biosynthesis protein QueD queuosine_QueD: queuosine biosynthesis protein QueD~[H] COG0720 6-pyruvoyl-tetrahydropterin synthase gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_436 CH60_4360 CH60_4360 CH60_4360 66325 66765 - type III secretion system regulator LcrR lcrR: type III secretion system regulator LcrR gene gene4210 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4360 CH60_4361 CH60_4361 CH60_4361 66762 68876 - type III secretion%2C HrcV family protein hrcV: type III secretion%2C HrcV family protein~[U] COG4789 Type III secretory pathway%2C component EscV gene gene4211 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4361 CH60_4362 CH60_4362 CH60_4362 68863 69207 - tetratricopeptide repeat family protein gene gene4212 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4362 CH60_4363 CH60_4363 CH60_4363 69204 69572 - type III secretion protein%2C YscX family type_III_YscX: type III secretion protein%2C YscX family gene gene4213 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4363 CH60_4364 CH60_4364 sycN sycN 69569 69940 - type III secretion chaperone SycN type_III_SycN: type III secretion chaperone SycN gene gene4214 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4364 CH60_4365 CH60_4365 CH60_4365 73 546 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene4327 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4365 CH60_4366 CH60_4366 CH60_4366 637 849 - putative transposition helper domain protein [L] COG1484 DNA replication protein gene gene4328 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4366 CH60_4367 CH60_4367 CH60_4367 849 1871 - helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene4329 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4367 CH60_4368 CH60_4368 CH60_4368 3138 3479 + hypothetical protein conserved hypothetical protein~[S] COG4683 Uncharacterized protein conserved in bacteria gene gene4330 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4368 CH60_4369 CH60_4369 CH60_4369 3479 3778 + helix-turn-helix family protein [K] COG1396 Predicted transcriptional regulators gene gene4331 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4369 CH60_437 CH60_437 CH60_437 455942 456613 - putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE rSAM_QueE_Ecoli: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE~[O] COG0602 Organic radical activating enzymes gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_437 CH60_4370 CH60_4370 pla pla 3965 4903 - coagulase/fibrinolysin [M] COG4571 Outer membrane protease gene gene4332 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4370 CH60_4371 CH60_4371 CH60_4371 5146 5451 - hypothetical protein conserved hypothetical protein gene gene4333 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4371 CH60_4372 CH60_4372 CH60_4372 5679 6752 + putative pesticin gene gene4334 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4372 CH60_4373 CH60_4373 CH60_4373 6787 7191 - putative pesticin immunity protein gene gene4335 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4373 CH60_4374 CH60_4374 rop rop 8448 8642 - regulatory protein rop gene gene4336 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_4374 CH60_438 CH60_438 sodC sodC 456717 457340 - superoxide dismutase Cu-Zn [P] COG2032 Cu/Zn superoxide dismutase gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_438 CH60_439 CH60_439 eno eno 457712 459007 - phosphopyruvate hydratase eno: phosphopyruvate hydratase~[G] COG0148 Enolase gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_439 CH60_44 CH60_44 CH60_44 55742 56644 - binding--dependent transport system inner membrane component family protein [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_44 CH60_440 CH60_440 pyrG pyrG 459088 460725 - CTP synthase pyrG: CTP synthase~[F] COG0504 CTP synthase (UTP-ammonia lyase) gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_440 CH60_441 CH60_441 CH60_441 460937 461779 - MazG family protein mazG: MazG family protein~[R] COG1694 Predicted pyrophosphatase gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_441 CH60_442 CH60_442 CH60_442 461981 464215 - RelA/SpoT family protein spoT_relA: RelA/SpoT family protein~[TK] COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_442 CH60_443 CH60_443 CH60_443 464659 467433 + HAMP domain protein [T] COG0642 Signal transduction histidine kinase gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_443 CH60_444 CH60_444 CH60_444 467592 469037 - peptidase Do family protein degP_htrA_DO: peptidase Do family protein~[O] COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C contain C-terminal PDZ domain gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_444 CH60_445 CH60_445 dgt dgt 469235 470755 - dGTPase family protein dGTP_triPase: dGTPase family protein~[F] COG0232 dGTP triphosphohydrolase gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_445 CH60_446 CH60_446 mtnN mtnN 471049 471750 + MTA/SAH nucleosidase MTA/SAH-Nsdase: MTA/SAH nucleosidase~[F] COG0775 Nucleoside phosphorylase gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_446 CH60_447 CH60_447 CH60_447 471795 472592 + periplasmic binding family protein [P] COG0614 ABC-type Fe3+-hydroxamate transport system%2C periplasmic component gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_447 CH60_448 CH60_448 CH60_448 472592 473206 + hypothetical protein conserved hypothetical protein~[S] COG2860 Predicted membrane protein gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_448 CH60_449 CH60_449 erpA erpA 473491 473835 - iron-sulfur cluster insertion protein erpA [S] COG0316 Uncharacterized conserved protein gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_449 CH60_45 CH60_45 CH60_45 56726 57673 - binding--dependent transport system inner membrane component family protein [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_45 CH60_450 CH60_450 clcA clcA 473971 475407 - H(+)/Cl(-) exchange transporter ClcA [P] COG0038 Chloride channel protein EriC gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_450 CH60_451 CH60_451 hemL hemL 475788 477068 + glutamate-1-semialdehyde-2%2C1-aminomutase hemL: glutamate-1-semialdehyde-2%2C1-aminomutase~[H] COG0001 Glutamate-1-semialdehyde aminotransferase gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_451 CH60_452 CH60_452 fhuB fhuB 477442 479439 - iron(3+)-hydroxamate import system permease protein fhuB [P] COG0609 ABC-type Fe3+-siderophore transport system%2C permease component gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_452 CH60_453 CH60_453 CH60_453 479436 480524 - periplasmic binding family protein [P] COG0614 ABC-type Fe3+-hydroxamate transport system%2C periplasmic component gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_453 CH60_454 CH60_454 CH60_454 480524 481318 - ABC transporter family protein [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems%2C ATPase components gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_454 CH60_455 CH60_455 mrcB mrcB 481641 484115 - penicillin-binding protein 1B PBP_1b: penicillin-binding protein 1B~[M] COG0744 Membrane carboxypeptidase (penicillin-binding protein) gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_455 CH60_456 CH60_456 hrpB hrpB 484224 486713 - ATP-dependent helicase HrpB DEAH_box_HrpB: ATP-dependent helicase HrpB~[L] COG1643 HrpA-like helicases gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_456 CH60_457 CH60_457 CH60_457 486826 487401 + 2'-5' RNA ligase 2_5_ligase: 2'-5' RNA ligase~[J] COG1514 2'-5' RNA ligase gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_457 CH60_458 CH60_458 sfsA sfsA 487514 488251 + sugar fermentation stimulation protein sfsA: sugar fermentation stimulation protein~[R] COG1489 DNA-binding protein%2C stimulates sugar fermentation gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_458 CH60_459 CH60_459 dksA dksA 488421 488876 + RNA polymerase-binding protein DksA dksA: RNA polymerase-binding protein DksA~[T] COG1734 DnaK suppressor protein gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_459 CH60_46 CH60_46 CH60_46 57956 59563 - bacterial extracellular solute-binding s%2C 5 Middle family protein [E] COG0747 ABC-type dipeptide transport system%2C periplasmic component gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_46 CH60_460 CH60_460 gluQ gluQ 488967 490121 + glutamyl-queuosine tRNA(Asp) synthetase queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase~[J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_460 CH60_461 CH60_461 pcnB pcnB 490363 491685 + poly(A) polymerase family protein pcnB: poly(A) polymerase family protein~[J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_461 CH60_462 CH60_462 folK folK 491693 492172 + 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase~[H] COG0801 7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_462 CH60_463 CH60_463 panB panB 492441 493238 + 3-methyl-2-oxobutanoate hydroxymethyltransferase panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase~[H] COG0413 Ketopantoate hydroxymethyltransferase gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_463 CH60_464 CH60_464 panC panC 493326 494180 + pantoate--beta-alanine ligase panC: pantoate--beta-alanine ligase~[H] COG0414 Panthothenate synthetase gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_464 CH60_465 CH60_465 panD panD 494591 494971 + aspartate 1-decarboxylase panD: aspartate 1-decarboxylase~[H] COG0853 Aspartate 1-decarboxylase gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_465 CH60_466 CH60_466 CH60_466 495120 496115 - polysaccharide deacetylase family protein [G] COG0726 Predicted xylanase/chitin deacetylase gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_466 CH60_467 CH60_467 CH60_467 496096 496434 - hypothetical protein conserved hypothetical protein~[G] COG0726 Predicted xylanase/chitin deacetylase gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_467 CH60_468 CH60_468 CH60_468 496641 497411 - ABC-2 type transporter family protein [V] COG0842 ABC-type multidrug transport system%2C permease component gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_468 CH60_469 CH60_469 CH60_469 497408 498334 - ABC transporter family protein [V] COG1131 ABC-type multidrug transport system%2C ATPase component gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_469 CH60_47 CH60_47 CH60_47 59966 60172 - hypothetical protein gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_47 CH60_470 CH60_470 can can 498570 499232 + carbonic anhydrase 2 [P] COG0288 Carbonic anhydrase gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_470 CH60_471 CH60_471 hpt hpt 499386 499922 - hypoxanthine phosphoribosyltransferase HGPRTase: hypoxanthine phosphoribosyltransferase~[F] COG0634 Hypoxanthine-guanine phosphoribosyltransferase gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_471 CH60_472 CH60_472 CH60_472 500142 501743 - multicopper oxidase family protein [Q] COG2132 Putative multicopper oxidases gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_472 CH60_473 CH60_473 CH60_473 502081 502407 + bacterial chaperone lipo family protein gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_473 CH60_474 CH60_474 speE speE 502524 503414 + spermidine synthase speE: spermidine synthase~[E] COG0421 Spermidine synthase gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_474 CH60_475 CH60_475 speD speD 503492 504286 + S-adenosylmethionine decarboxylase proenzyme SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme~[E] COG1586 S-adenosylmethionine decarboxylase gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_475 CH60_476 CH60_476 CH60_476 504724 505632 + eamA-like transporter family protein [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_476 CH60_477 CH60_477 CH60_477 505743 506102 - hypothetical protein conserved hypothetical protein~[S] COG3112 Uncharacterized protein conserved in bacteria gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_477 CH60_478 CH60_478 acnB acnB 506401 508998 - aconitate hydratase 2 acnB: aconitate hydratase 2~[C] COG1049 Aconitase B gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_478 CH60_479 CH60_479 CH60_479 509568 510026 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_479 CH60_48 CH60_48 CH60_48 60232 61995 - hemolysin secretion/activation ShlB/FhaC/HecB family protein [U] COG2831 Hemolysin activation/secretion protein gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_48 CH60_480 CH60_480 lpdA lpdA 510269 511693 - dihydrolipoyl dehydrogenase lipoamide_DH: dihydrolipoyl dehydrogenase~[C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase (E3) component%2C and related enzymes gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_480 CH60_481 CH60_481 aceF aceF 511999 513528 - dihydrolipoyllysine-residue acetyltransferase PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase~[C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide acyltransferase (E2) component%2C and related enzymes gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_481 CH60_482 CH60_482 aceE aceE 513542 516205 - pyruvate dehydrogenase (acetyl-transferring)%2C homodimeric type aceE: pyruvate dehydrogenase (acetyl-transferring)%2C homodimeric type~[C] COG2609 Pyruvate dehydrogenase complex%2C dehydrogenase (E1) component gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_482 CH60_483 CH60_483 CH60_483 516401 517165 - bacterial regulatory s%2C gntR family protein [K] COG2186 Transcriptional regulators gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_483 CH60_484 CH60_484 CH60_484 518028 519425 + amino acid permease family protein [E] COG1113 Gamma-aminobutyrate permease and related permeases gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_484 CH60_485 CH60_485 ampE ampE 519858 520712 - protein AmpE [V] COG3725 Membrane protein required for beta-lactamase induction gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_485 CH60_486 CH60_486 CH60_486 521002 521553 - N-acetylmuramoyl-L-alanine amidase family protein [V] COG3023 Negative regulator of beta-lactamase expression gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_486 CH60_487 CH60_487 nadC nadC 521666 522574 + nicotinate-nucleotide diphosphorylase nadC: nicotinate-nucleotide diphosphorylase~[H] COG0157 Nicotinate-nucleotide pyrophosphorylase gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_487 CH60_488 CH60_488 CH60_488 522777 523241 + hypothetical protein IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein~[NU] COG4969 Tfp pilus assembly protein%2C major pilin PilA gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_488 CH60_489 CH60_489 CH60_489 523234 524772 + type II/IV secretion system family protein [NU] COG2804 Type II secretory pathway%2C ATPase PulE/Tfp pilus assembly pathway%2C ATPase PilB gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_489 CH60_49 CH60_49 CH60_49 62104 63495 - hypothetical protein adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein~[U] COG3210 Large exoproteins involved in heme utilization or adhesion gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_49 CH60_490 CH60_490 CH60_490 524769 525968 + type II secretion system (T2SS)%2C F family protein [NU] COG1459 Type II secretory pathway%2C component PulF gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_490 CH60_491 CH60_491 guaC guaC 526339 527382 - guanosine monophosphate reductase GMP_reduct_1: guanosine monophosphate reductase~[F] COG0516 IMP dehydrogenase/GMP reductase gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_491 CH60_492 CH60_492 coaE coaE 527678 528298 + dephospho-CoA kinase [H] COG0237 Dephospho-CoA kinase gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_492 CH60_493 CH60_493 CH60_493 528295 529047 + hypothetical protein conserved hypothetical protein~[S] COG4582 Uncharacterized protein conserved in bacteria gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_493 CH60_494 CH60_494 CH60_494 529233 529439 + hypothetical protein conserved hypothetical protein~[S] COG3024 Uncharacterized protein conserved in bacteria gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_494 CH60_495 CH60_495 CH60_495 529629 530087 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_495 CH60_496 CH60_496 CH60_496 530198 531151 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_496 CH60_497 CH60_497 CH60_497 531218 531997 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_497 CH60_498 CH60_498 CH60_498 532260 532505 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_498 CH60_499 CH60_499 CH60_499 532627 533082 - hypothetical protein conserved hypothetical protein gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_499 CH60_5 CH60_5 CH60_5 4269 4952 - hypothetical protein conserved hypothetical protein~[R] COG3822 ABC-type sugar transport system%2C auxiliary component gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_5 CH60_50 CH60_50 CH60_50 63808 63871 - tRNA-Pro tRNA gene49 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_50 CH60_500 CH60_500 CH60_500 533222 533962 - hypothetical protein opacity-associated A N-terminal motif family protein~[M] COG3061 Cell envelope opacity-associated protein A gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_500 CH60_501 CH60_501 CH60_501 534320 534940 + domain amino terminal to FKBP-type peptidyl-prolyl isomerase family protein [O] COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_501 CH60_502 CH60_502 ric ric 535038 535703 - iron-sulfur cluster repair di-iron protein feS_repair_RIC: iron-sulfur cluster repair di-iron protein~[D] COG2846 Regulator of cell morphogenesis and NO signaling gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_502 CH60_503 CH60_503 cpdB cpdB 535858 537816 - 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase cycNucDiestase: 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase~[F] COG0737 5'-nucleotidase/2'%2C3'-cyclic phosphodiesterase and related esterases gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_503 CH60_504 CH60_504 cysQ cysQ 538263 539003 + 3'(2')%2C5'-bisphosphate nucleotidase bisphos_cysQ: 3'(2')%2C5'-bisphosphate nucleotidase~[P] COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_504 CH60_505 CH60_505 CH60_505 539006 539569 - hypothetical protein conserved hypothetical protein~[R] COG3054 Predicted transcriptional regulator gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_505 CH60_506 CH60_506 CH60_506 539905 540117 + hypothetical protein conserved hypothetical protein gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_506 CH60_507 CH60_507 CH60_507 540225 541556 - CBS domain protein [R] COG1253 Hemolysins and related proteins containing CBS domains gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_507 CH60_508 CH60_508 msrA msrA 541834 542472 - peptide-methionine (S)-S-oxide reductase msrA: peptide-methionine (S)-S-oxide reductase~[O] COG0225 Peptide methionine sulfoxide reductase gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_508 CH60_509 CH60_509 CH60_509 542747 544483 + surface antigen variable number repeat family protein [M] COG0729 Outer membrane protein gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_509 CH60_51 CH60_51 CH60_51 63988 65319 - phosphoglycerate transporter family protein 2A0104: phosphoglycerate transporter family protein~[G] COG2271 Sugar phosphate permease gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_51 CH60_510 CH60_510 CH60_510 544480 548397 + hypothetical protein conserved hypothetical protein~[S] COG2911 Uncharacterized protein conserved in bacteria gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_510 CH60_511 CH60_511 CH60_511 548400 548756 + AIG2-like family protein [S] COG2105 Uncharacterized conserved protein gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_511 CH60_512 CH60_512 ppa ppa 548874 549401 - inorganic pyrophosphatase [C] COG0221 Inorganic pyrophosphatase gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_512 CH60_513 CH60_513 CH60_513 549601 550614 - fructose-1-6-bisphosphatase family protein [G] COG0158 Fructose-1%2C6-bisphosphatase gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_513 CH60_514 CH60_514 mpl mpl 550785 552167 + L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase~mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase~[M] COG0773 UDP-N-acetylmuramate-alanine ligase gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_514 CH60_515 CH60_515 CH60_515 552463 552726 - hypothetical protein conserved hypothetical protein gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_515 CH60_516 CH60_516 argR argR 553115 553585 - arginine repressor argR_whole: arginine repressor~[K] COG1438 Arginine repressor gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_516 CH60_517 CH60_517 mdh mdh 554049 554987 + malate dehydrogenase%2C NAD-dependent MDH_euk_gproteo: malate dehydrogenase%2C NAD-dependent~[C] COG0039 Malate/lactate dehydrogenases gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_517 CH60_518 CH60_518 CH60_518 555421 555696 - winged helix-turn-helix DNA-binding family protein [K] COG3423 Predicted transcriptional regulator gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_518 CH60_519 CH60_519 CH60_519 555880 556227 + mu DNA-binding domain protein [K] COG2932 Predicted transcriptional regulator gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_519 CH60_52 CH60_52 CH60_52 65414 66943 - histidine kinase family protein [T] COG3851 Signal transduction histidine kinase%2C glucose-6-phosphate specific gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_52 CH60_520 CH60_520 CH60_520 556324 557295 - polyprenyl synthetase family protein [H] COG0142 Geranylgeranyl pyrophosphate synthase gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_520 CH60_521 CH60_521 rplU rplU 557555 557866 + ribosomal protein L21 L21: ribosomal protein L21~[J] COG0261 Ribosomal protein L21 gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_521 CH60_522 CH60_522 rpmA rpmA 557886 558143 + ribosomal protein L27 L27: ribosomal protein L27~[J] COG0211 Ribosomal protein L27 gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_522 CH60_523 CH60_523 CH60_523 558231 559217 + eamA-like transporter family protein [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_523 CH60_524 CH60_524 cgtA cgtA 559218 560390 + Obg family GTPase CgtA obg_CgtA: Obg family GTPase CgtA~[R] COG0536 Predicted GTPase gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_524 CH60_525 CH60_525 CH60_525 560485 561552 - HAMP domain protein [T] COG0642 Signal transduction histidine kinase gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_525 CH60_526 CH60_526 CH60_526 561549 562211 - hypothetical protein transcriptional regulatory%2C C terminal family protein~[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_526 CH60_527 CH60_527 dacB dacB 562217 563665 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase~[M] COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_527 CH60_528 CH60_528 greA greA 563923 564399 + transcription elongation factor greA [K] COG0782 Transcription elongation factor gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_528 CH60_529 CH60_529 yhbY yhbY 564527 564820 - RNA-binding protein YhbY [J] COG1534 Predicted RNA-binding protein containing KH domain%2C possibly ribosomal protein gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_529 CH60_53 CH60_53 uhpA uhpA 66940 67530 - transcriptional regulatory protein uhpA [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_53 CH60_530 CH60_530 rrmJ rrmJ 564967 565596 + ribosomal RNA large subunit methyltransferase J rrmJ: ribosomal RNA large subunit methyltransferase J~[J] COG0293 23S rRNA methylase gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_530 CH60_531 CH60_531 ftsH ftsH 565653 567587 + ATP-dependent zinc metalloprotease FtsH [O] COG0465 ATP-dependent Zn proteases gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_531 CH60_532 CH60_532 folP folP 567707 568540 + dihydropteroate synthase DHPS: dihydropteroate synthase~[H] COG0294 Dihydropteroate synthase and related enzymes gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_532 CH60_533 CH60_533 glmM glmM 568550 569890 + phosphoglucosamine mutase glmM: phosphoglucosamine mutase~[G] COG1109 Phosphomannomutase gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_533 CH60_534 CH60_534 secG secG 570113 570448 + preprotein translocase%2C SecG subunit secG: preprotein translocase%2C SecG subunit~[U] COG1314 Preprotein translocase subunit SecG gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_534 CH60_535 CH60_535 CH60_535 570541 570627 + tRNA-Leu tRNA gene531 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_535 CH60_536 CH60_536 CH60_536 570688 570764 + tRNA-Met tRNA gene532 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_536 CH60_537 CH60_537 rimP rimP 570980 571432 + ribosome maturation factor rimP [S] COG0779 Uncharacterized protein conserved in bacteria gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_537 CH60_538 CH60_538 nusA nusA 571454 572941 + transcription elongation protein nusA [K] COG0195 Transcription elongation factor gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_538 CH60_539 CH60_539 infB infB 572966 575644 + translation initiation factor IF-2 IF-2: translation initiation factor IF-2~[J] COG0532 Translation initiation factor 2 (IF-2%3B GTPase) gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_539 CH60_54 CH60_54 CH60_54 67646 69337 - hypothetical protein conserved hypothetical protein~[R] COG2194 Predicted membrane-associated%2C metal-dependent hydrolase gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_54 CH60_540 CH60_540 rbfA rbfA 575710 576120 + ribosome-binding factor A rbfA: ribosome-binding factor A~[J] COG0858 Ribosome-binding factor A gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_540 CH60_541 CH60_541 truB truB 576120 577094 + tRNA pseudouridine(55) synthase truB: tRNA pseudouridine(55) synthase~[J] COG0130 Pseudouridine synthase gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_541 CH60_542 CH60_542 rpsO rpsO 577216 577485 + ribosomal protein S15 S15_bact: ribosomal protein S15~[J] COG0184 Ribosomal protein S15P/S13E gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_542 CH60_543 CH60_543 CH60_543 577572 578192 + transposase family protein [L] COG2963 Transposase and inactivated derivatives gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_543 CH60_544 CH60_544 CH60_544 578140 578925 + integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_544 CH60_545 CH60_545 pnp pnp 579192 581309 + polyribonucleotide nucleotidyltransferase polynuc_phos: polyribonucleotide nucleotidyltransferase~[J] COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_545 CH60_546 CH60_546 CH60_546 581434 582318 + tetratricopeptide repeat family protein [R] COG4785 Lipoprotein NlpI%2C contains TPR repeats gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_546 CH60_547 CH60_547 CH60_547 582505 584499 + DEAD/DEAH box helicase family protein [LKJ] COG0513 Superfamily II DNA and RNA helicases gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_547 CH60_548 CH60_548 CH60_548 584735 585103 + hypothetical protein conserved hypothetical protein~[S] COG4679 Phage-related protein gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_548 CH60_549 CH60_549 CH60_549 585127 585438 + helix-turn-helix family protein [K] COG1396 Predicted transcriptional regulators gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_549 CH60_55 CH60_55 CH60_55 69875 71338 - alpha/beta hydrolase family protein [I] COG2267 Lysophospholipase gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_55 CH60_550 CH60_550 CH60_550 585693 586748 - luciferase oxidoreductase%2C group 1 family protein oxido_grp_1: luciferase oxidoreductase%2C group 1 family protein~[C] COG2141 Coenzyme F420-dependent N5%2CN10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_550 CH60_551 CH60_551 CH60_551 585438 585728 + hypothetical protein conserved hypothetical protein gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_551 CH60_552 CH60_552 CH60_552 587286 588416 + efflux transporter%2C RND family%2C MFP subunit RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_552 CH60_553 CH60_553 CH60_553 588420 591545 + RND transporter%2C hydrophobe/amphiphile efflux-1 family protein 2A0602: RND transporter%2C hydrophobe/amphiphile efflux-1 family protein~[V] COG0841 Cation/multidrug efflux pump gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_553 CH60_554 CH60_554 CH60_554 591547 592953 + efflux transporter%2C outer membrane factor (OMF) lipo%2C NodT family protein outer_NodT: efflux transporter%2C outer membrane factor (OMF) lipo%2C NodT family protein~[MU] COG1538 Outer membrane protein gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_554 CH60_555 CH60_555 CH60_555 593094 593972 - peptidase U32 family protein [O] COG0826 Collagenase and related proteases gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_555 CH60_556 CH60_556 CH60_556 593984 594979 - hypothetical protein conserved hypothetical protein~[O] COG0826 Collagenase and related proteases gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_556 CH60_557 CH60_557 CH60_557 595295 595816 + hypothetical protein alkyl sulfatase C-terminal family protein~[I] COG3154 Putative lipid carrier protein gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_557 CH60_558 CH60_558 CH60_558 595813 596316 + acetyltransferase family protein [R] COG3153 Predicted acetyltransferase gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_558 CH60_559 CH60_559 CH60_559 596491 596778 - GIY-YIG catalytic domain protein [L] COG2827 Predicted endonuclease containing a URI domain gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_559 CH60_56 CH60_56 CH60_56 71806 73062 - amino acid permease family protein [E] COG1113 Gamma-aminobutyrate permease and related permeases gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_56 CH60_560 CH60_560 CH60_560 597009 599027 - alginate lyase family protein gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_560 CH60_561 CH60_561 CH60_561 599051 600271 - alginate lyase family protein gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_561 CH60_562 CH60_562 CH60_562 600853 602148 + bacterial extracellular solute-binding family protein [G] COG1653 ABC-type sugar transport system%2C periplasmic component gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_562 CH60_563 CH60_563 CH60_563 602156 603040 + binding--dependent transport system inner membrane component family protein [G] COG1175 ABC-type sugar transport systems%2C permease components gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_563 CH60_564 CH60_564 CH60_564 603059 603898 + binding--dependent transport system inner membrane component family protein [G] COG0395 ABC-type sugar transport system%2C permease component gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_564 CH60_565 CH60_565 CH60_565 603910 605000 + ABC transporter family protein%3BTOBE domain protein pseudogene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_565 CH60_567 CH60_567 CH60_567 605015 606181 + alginate lyase family protein gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_567 CH60_568 CH60_568 CH60_568 606280 606723 + hypothetical protein putative uPF0306 protein YPO3467/y0717/YP_0616~[S] COG3787 Uncharacterized protein conserved in bacteria gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_568 CH60_569 CH60_569 CH60_569 606875 607513 + semialdehyde dehydrogenase%2C NAD binding domain protein [MG] COG0702 Predicted nucleoside-diphosphate-sugar epimerases gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_569 CH60_57 CH60_57 CH60_57 73131 73910 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_57 CH60_570 CH60_570 phnP phnP 607526 608278 - phosphonate metabolism protein PhnP phnP: phosphonate metabolism protein PhnP~[R] COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_570 CH60_571 CH60_571 phnN phnN 608269 608850 - phosphonate metabolism protein/1%2C5-bisphosphokinase (PRPP-forming) PhnN phosphon_PhnN: phosphonate metabolism protein/1%2C5-bisphosphokinase (PRPP-forming) PhnN~[P] COG3709 Uncharacterized component of phosphonate metabolism gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_571 CH60_572 CH60_572 phnM phnM 608850 609986 - phosphonate metabolism protein PhnM phosphono_phnM: phosphonate metabolism protein PhnM~[P] COG3454 Metal-dependent hydrolase involved in phosphonate metabolism gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_572 CH60_573 CH60_573 phnL phnL 609983 610702 - phosphonate C-P lyase system protein PhnL CP_lyasePhnL: phosphonate C-P lyase system protein PhnL~[P] COG4778 ABC-type phosphonate transport system%2C ATPase component gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_573 CH60_574 CH60_574 phnK phnK 611091 611882 - phosphonate C-P lyase system protein PhnK CP_lyasePhnK: phosphonate C-P lyase system protein PhnK~[P] COG4107 ABC-type phosphonate transport system%2C ATPase component gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_574 CH60_575 CH60_575 CH60_575 611882 612763 - phosphonate metabolism PhnJ family protein [P] COG3627 Uncharacterized enzyme of phosphonate metabolism gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_575 CH60_576 CH60_576 CH60_576 612756 613934 - bacterial phosphonate metabolism family protein [P] COG3626 Uncharacterized enzyme of phosphonate metabolism gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_576 CH60_577 CH60_577 phnH phnH 613934 614560 - phosphonate C-P lyase system protein PhnH phnH_redo: phosphonate C-P lyase system protein PhnH~[P] COG3625 Uncharacterized enzyme of phosphonate metabolism gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_577 CH60_578 CH60_578 phnG phnG 614560 615036 - phosphonate C-P lyase system protein PhnG phnG_redo: phosphonate C-P lyase system protein PhnG~[P] COG3624 Uncharacterized enzyme of phosphonate metabolism gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_578 CH60_579 CH60_579 phnF phnF 615037 615762 - phosphonate metabolism transcriptional regulator PhnF C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF~[K] COG2188 Transcriptional regulators gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_579 CH60_58 CH60_58 CH60_58 73910 74932 - helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_58 CH60_580 CH60_580 CH60_580 615942 616076 + hypothetical protein conserved hypothetical protein gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_580 CH60_581 CH60_581 CH60_581 616090 616404 - 4Fe-4S single cluster domain protein [O] COG0602 Organic radical activating enzymes gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_581 CH60_582 CH60_582 nrdD nrdD 616731 618869 - anaerobic ribonucleoside-triphosphate reductase nrdD: anaerobic ribonucleoside-triphosphate reductase~[F] COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_582 CH60_583 CH60_583 CH60_583 619303 620019 - ABC transporter family protein [EP] COG1124 ABC-type dipeptide/oligopeptide/nickel transport system%2C ATPase component gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_583 CH60_584 CH60_584 CH60_584 620006 620884 - ABC transporter family protein [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system%2C ATPase component gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_584 CH60_585 CH60_585 CH60_585 620877 621713 - binding--dependent transport system inner membrane component family protein [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_585 CH60_586 CH60_586 CH60_586 621732 622781 - binding--dependent transport system inner membrane component family protein [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_586 CH60_587 CH60_587 CH60_587 622877 624444 - putative dipeptide-binding protein%3Bbacterial extracellular solute-binding s%2C 5 Middle family protein pseudogene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_587 CH60_589 CH60_589 CH60_589 625083 625541 + hypothetical protein conserved hypothetical protein~[G] COG2731 Beta-galactosidase%2C beta subunit gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_589 CH60_59 CH60_59 CH60_59 75377 75892 - transposase family protein [L] COG2963 Transposase and inactivated derivatives gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_59 CH60_590 CH60_590 argF argF 625848 626855 - ornithine carbamoyltransferase orni_carb_tr: ornithine carbamoyltransferase~[E] COG0078 Ornithine carbamoyltransferase gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_590 CH60_591 CH60_591 rraB rraB 627067 627498 + regulator of ribonuclease activity B [S] COG3076 Uncharacterized protein conserved in bacteria gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_591 CH60_592 CH60_592 CH60_592 628005 628508 - acetyltransferase domain protein [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_592 CH60_593 CH60_593 valS valS 628651 631548 - valine--tRNA ligase valS: valine--tRNA ligase~[J] COG0525 Valyl-tRNA synthetase gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_593 CH60_594 CH60_594 CH60_594 631561 632010 - DNA polymerase III chi subunit%2C HolC family protein [L] COG2927 DNA polymerase III%2C chi subunit gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_594 CH60_595 CH60_595 CH60_595 632161 633672 - hypothetical protein cytosol aminopeptidase family%2C N-terminal domain protein~[E] COG0260 Leucyl aminopeptidase gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_595 CH60_596 CH60_596 lptF lptF 633952 635046 + LPS export ABC transporter permease LptF lptF_YjgP: LPS export ABC transporter permease LptF~[R] COG0795 Predicted permeases gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_596 CH60_597 CH60_597 lptG lptG 635046 636122 + LPS export ABC transporter permease LptG lptG_lptG: LPS export ABC transporter permease LptG~[R] COG0795 Predicted permeases gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_597 CH60_598 CH60_598 CH60_598 636227 636311 + tRNA-Leu tRNA gene592 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_598 CH60_599 CH60_599 CH60_599 636510 637769 + phage integrase family protein [L] COG0582 Integrase gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_599 CH60_6 CH60_6 CH60_6 5027 5971 - periplasmic binding domain protein [G] COG1879 ABC-type sugar transport system%2C periplasmic component gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_6 CH60_60 CH60_60 CH60_60 76085 76843 - deoR-like helix-turn-helix domain protein [KG] COG1349 Transcriptional regulators of sugar metabolism gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_60 CH60_600 CH60_600 CH60_600 637959 639833 + hypothetical protein conserved hypothetical protein~[S] COG1479 Uncharacterized conserved protein gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_600 CH60_601 CH60_601 CH60_601 639826 640935 + histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase family protein gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_601 CH60_602 CH60_602 CH60_602 640986 641765 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_602 CH60_603 CH60_603 CH60_603 641765 642787 - helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_603 CH60_604 CH60_604 CH60_604 642899 643357 + transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_604 CH60_605 CH60_605 raiA raiA 643689 644051 - ribosome-associated inhibitor A [J] COG1544 Ribosome-associated protein Y (PSrp-1) gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_605 CH60_606 CH60_606 CH60_606 644406 645137 - hypothetical protein conserved hypothetical protein~[R] COG4105 DNA uptake lipoprotein gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_606 CH60_607 CH60_607 CH60_607 645273 646250 + pseudouridine synthase%2C RluA family protein rluA_subfam: pseudouridine synthase%2C RluA family protein~[J] COG0564 Pseudouridylate synthases%2C 23S RNA-specific gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_607 CH60_608 CH60_608 CH60_608 646252 646983 + multi-copper polyphenol oxidoreductase laccase family protein [S] COG1496 Uncharacterized conserved protein gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_608 CH60_609 CH60_609 clpB clpB 647113 649686 + ATP-dependent chaperone protein ClpB chaperone_ClpB: ATP-dependent chaperone protein ClpB~[O] COG0542 ATPases with chaperone activity%2C ATP-binding subunit gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_609 CH60_61 CH60_61 glpG glpG 76878 77714 - rhomboid family protease GlpG rhombo_GlpG: rhomboid family protease GlpG~[R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_61 CH60_610 CH60_610 CH60_610 650210 651740 + 16S ribosomal RNA rRNA gene604 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_610 CH60_611 CH60_611 CH60_611 651848 651924 + tRNA-Ile tRNA gene605 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_611 CH60_612 CH60_612 CH60_612 651976 652051 + tRNA-Ala tRNA gene606 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_612 CH60_613 CH60_613 CH60_613 652272 655175 + 23S ribosomal RNA rRNA gene607 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_613 CH60_615 CH60_615 CH60_615 655287 655401 + 5S ribosomal RNA rRNA gene608 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_615 CH60_616 CH60_616 CH60_616 655788 656129 - hypothetical protein conserved hypothetical protein~[R] COG5544 Predicted periplasmic lipoprotein gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_616 CH60_617 CH60_617 CH60_617 656191 657546 - phospholipase D family protein [I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_617 CH60_618 CH60_618 CH60_618 657722 660364 - acetyltransferase family protein [C] COG1042 Acyl-CoA synthetase (NDP forming) gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_618 CH60_619 CH60_619 CH60_619 660407 661156 - DTW domain protein [S] COG3148 Uncharacterized conserved protein gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_619 CH60_62 CH60_62 CH60_62 77732 78061 - rhodanese-like domain protein [P] COG0607 Rhodanese-related sulfurtransferase gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_62 CH60_620 CH60_620 trxA trxA 661326 661763 - thioredoxin thioredoxin: thioredoxin~[OC] COG0526 Thiol-disulfide isomerase and thioredoxins gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_620 CH60_621 CH60_621 CH60_621 662015 663181 + RNA 2'-O ribose methyltransferase substrate binding family protein [J] COG0566 rRNA methylases gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_621 CH60_622 CH60_622 CH60_622 663304 664839 - drug resistance MFS transporter%2C drug:H+ antiporter-2 family protein efflux_EmrB: drug resistance MFS transporter%2C drug:H+ antiporter-2 family protein~[GEPR] COG0477 Permeases of the major facilitator superfamily gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_622 CH60_623 CH60_623 CH60_623 664878 666050 - efflux pump membrane family protein 8a0101: efflux pump membrane family protein~[V] COG1566 Multidrug resistance efflux pump gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_623 CH60_624 CH60_624 CH60_624 666434 666946 - winged helix DNA-binding domain protein [K] COG1846 Transcriptional regulators gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_624 CH60_625 CH60_625 CH60_625 667118 667459 - branched-chain amino acid transport family protein gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_625 CH60_626 CH60_626 ygaZ ygaZ 667456 668229 - inner membrane protein YgaZ [E] COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_626 CH60_627 CH60_627 CH60_627 668389 669588 - sugar (and other) transporter family protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_627 CH60_628 CH60_628 CH60_628 669816 670202 - hypothetical protein conserved hypothetical protein gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_628 CH60_629 CH60_629 CH60_629 670312 671709 - amidohydrolase%2C AtzE family protein amido_AtzE: amidohydrolase%2C AtzE family protein~[J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_629 CH60_63 CH60_63 CH60_63 78436 81147 - bacterial regulatory s%2C luxR family protein [K] COG2909 ATP-dependent transcriptional regulator gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_63 CH60_630 CH60_630 CH60_630 671706 671909 - hypothetical protein conserved hypothetical protein gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_630 CH60_631 CH60_631 CH60_631 672219 673052 + SIS domain protein [K] COG1737 Transcriptional regulators gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_631 CH60_632 CH60_632 CH60_632 673380 674168 + bacterial extracellular solute-binding s%2C 3 family protein [ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_632 CH60_633 CH60_633 CH60_633 674181 674849 + amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG0765 ABC-type amino acid transport system%2C permease component gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_633 CH60_634 CH60_634 CH60_634 674846 675499 + amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG0765 ABC-type amino acid transport system%2C permease component gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_634 CH60_635 CH60_635 CH60_635 675480 676226 + ABC transporter family protein [E] COG1126 ABC-type polar amino acid transport system%2C ATPase component gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_635 CH60_636 CH60_636 CH60_636 676258 677181 + aminotransferase class-V family protein [E] COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_636 CH60_637 CH60_637 CH60_637 677232 677819 - istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_637 CH60_638 CH60_638 CH60_638 677779 678012 - putative transposition helper domain protein [L] COG1484 DNA replication protein gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_638 CH60_639 CH60_639 CH60_639 678080 678289 - putative transposase Orf A%2C insertion element IS100 [L] COG4584 Transposase and inactivated derivatives gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_639 CH60_64 CH60_64 malP malP 81465 81815 + phosphorylase domain protein [G] COG0058 Glucan phosphorylase gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_64 CH60_640 CH60_640 CH60_640 678249 679034 - helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_640 CH60_641 CH60_641 CH60_641 679512 679697 + hypothetical protein conserved hypothetical protein gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_641 CH60_642 CH60_642 CH60_642 679947 680228 - TOBE domain protein [G] COG3839 ABC-type sugar transport systems%2C ATPase components gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_642 CH60_643 CH60_643 CH60_643 680174 681064 - ABC transporter family protein [G] COG3839 ABC-type sugar transport systems%2C ATPase components gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_643 CH60_644 CH60_644 CH60_644 681089 681916 - binding--dependent transport system inner membrane component family protein [G] COG0395 ABC-type sugar transport system%2C permease component gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_644 CH60_645 CH60_645 CH60_645 681909 682769 - binding--dependent transport system inner membrane component family protein [G] COG1175 ABC-type sugar transport systems%2C permease components gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_645 CH60_646 CH60_646 CH60_646 682836 684104 - bacterial extracellular solute-binding family protein [G] COG1653 ABC-type sugar transport system%2C periplasmic component gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_646 CH60_647 CH60_647 CH60_647 684134 685147 - oxidoreductase%2C NAD-binding Rossmann fold family protein [R] COG0673 Predicted dehydrogenases and related proteins gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_647 CH60_648 CH60_648 CH60_648 685815 686612 - UTRA domain protein [K] COG2188 Transcriptional regulators gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_648 CH60_649 CH60_649 CH60_649 686629 686790 + hypothetical protein conserved hypothetical protein gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_649 CH60_65 CH60_65 CH60_65 81821 83829 + carbohydrate phosphorylase family protein pseudogene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_65 CH60_650 CH60_650 CH60_650 686799 686903 - putative transposase A putative iS1400 transposase A~[L] COG2801 Transposase and inactivated derivatives gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_650 CH60_651 CH60_651 CH60_651 687581 688015 + hypothetical protein conserved hypothetical protein gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_651 CH60_652 CH60_652 CH60_652 688027 688596 + putative exported protein gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_652 CH60_653 CH60_653 CH60_653 688784 688957 + putative membrane protein gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_653 CH60_654 CH60_654 CH60_654 689014 689352 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_654 CH60_655 CH60_655 CH60_655 689352 690212 - transposase%2C Mutator family protein [L] COG3328 Transposase and inactivated derivatives gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_655 CH60_656 CH60_656 CH60_656 690260 691336 - TIR domain protein gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_656 CH60_657 CH60_657 CH60_657 691402 691692 - hypothetical protein conserved hypothetical protein~[S] COG3514 Uncharacterized protein conserved in bacteria gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_657 CH60_658 CH60_658 CH60_658 691673 691945 - hypothetical protein conserved hypothetical protein~[S] COG2929 Uncharacterized protein conserved in bacteria gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_658 CH60_659 CH60_659 CH60_659 692081 692335 + phage baseplate assembly V family protein phage_P2_V: phage baseplate assembly V family protein~[R] COG4540 Phage P2 baseplate assembly protein gpV gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_659 CH60_660 CH60_660 CH60_660 692332 692631 + lysozyme family protein [R] COG3628 Phage baseplate assembly protein W gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_660 CH60_661 CH60_661 CH60_661 693370 693585 + hypothetical protein conserved hypothetical protein gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_661 CH60_662 CH60_662 CH60_662 693582 693887 + hypothetical protein conserved hypothetical protein gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_662 CH60_663 CH60_663 CH60_663 693868 694146 + hypothetical protein conserved hypothetical protein gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_663 CH60_664 CH60_664 CH60_664 694311 694451 + putative gpF1 [R] COG3497 Phage tail sheath protein FI gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_664 CH60_665 CH60_665 CH60_665 694562 694981 + transposase family protein gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_665 CH60_666 CH60_666 CH60_666 695053 696012 + integrase core domain protein [L] COG2801 Transposase and inactivated derivatives gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_666 CH60_667 CH60_667 CH60_667 696232 696576 + type VI secretion system effector%2C Hcp1 family protein VI_effect_Hcp1: type VI secretion system effector%2C Hcp1 family protein~[S] COG3157 Hemolysin-coregulated protein (uncharacterized) gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_667 CH60_668 CH60_668 CH60_668 696784 696966 - putative membrane protein gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_668 CH60_669 CH60_669 CH60_669 696980 697081 - hypothetical protein conserved hypothetical protein gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_669 CH60_67 CH60_67 malQ malQ 83842 85938 + 4-alpha-glucanotransferase malQ: 4-alpha-glucanotransferase~[G] COG1640 4-alpha-glucanotransferase gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_67 CH60_670 CH60_670 CH60_670 697159 697332 - hypothetical protein conserved hypothetical protein gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_670 CH60_671 CH60_671 CH60_671 697577 697699 - hypothetical protein gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_671 CH60_672 CH60_672 CH60_672 698092 698319 - hypothetical protein dnaB-like helicase C terminal domain protein~[L] COG0305 Replicative DNA helicase gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_672 CH60_673 CH60_673 CH60_673 698430 698945 + phage integrase family protein [L] COG0582 Integrase gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_673 CH60_674 CH60_674 CH60_674 699243 699328 - tRNA-Leu tRNA gene667 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_674 CH60_675 CH60_675 CH60_675 699339 699412 - tRNA-Cys tRNA gene668 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_675 CH60_676 CH60_676 CH60_676 699465 699540 - tRNA-Gly tRNA gene669 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_676 CH60_677 CH60_677 pgsA pgsA 699685 700233 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase~[I] COG0558 Phosphatidylglycerophosphate synthase gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_677 CH60_678 CH60_678 uvrC uvrC 700292 702124 - excinuclease ABC subunit C uvrC: excinuclease ABC subunit C~[L] COG0322 Nuclease subunit of the excinuclease complex gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_678 CH60_679 CH60_679 CH60_679 702117 702773 - bacterial regulatory s%2C luxR family protein [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_679 CH60_68 CH60_68 nfuA nfuA 86267 86842 - fe/S biogenesis protein nfuA [O] COG0694 Thioredoxin-like proteins and domains gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_68 CH60_680 CH60_680 CH60_680 703436 703660 + hypothetical protein conserved hypothetical protein gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_680 CH60_681 CH60_681 CH60_681 703788 704129 + glpM family protein [R] COG3136 Uncharacterized membrane protein required for alginate biosynthesis gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_681 CH60_682 CH60_682 CH60_682 704157 704411 - putative membrane protein gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_682 CH60_683 CH60_683 ail ail 704751 705302 - attachment invasion locus protein [M] COG3637 Opacity protein and related surface antigens gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_683 CH60_684 CH60_684 CH60_684 705989 706064 - tRNA-Lys tRNA gene677 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_684 CH60_685 CH60_685 cycA cycA 706426 707841 + D-serine/D-alanine/glycine transporter [E] COG1113 Gamma-aminobutyrate permease and related permeases gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_685 CH60_686 CH60_686 nanM nanM 707967 709145 - N-acetylneuraminate epimerase [S] COG3055 Uncharacterized protein conserved in bacteria gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_686 CH60_687 CH60_687 wrbA wrbA 709539 710138 + quinone oxidoreductase%2C type IV NAD(P)H:quinone oxidoreductase%2C type IV~flav_wrbA: NAD(P)H:quinone oxidoreductase%2C type IV~[R] COG0655 Multimeric flavodoxin WrbA gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_687 CH60_688 CH60_688 CH60_688 710224 711528 - Dyp-type peroxidase family protein dyp_perox_fam: Dyp-type peroxidase family protein~[P] COG2837 Predicted iron-dependent peroxidase gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_688 CH60_689 CH60_689 CH60_689 711539 712669 - imelysin family protein [P] COG2822 Predicted periplasmic lipoprotein involved in iron transport gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_689 CH60_69 CH60_69 CH60_69 86902 87603 - phosphoribosyl transferase domain protein [R] COG1040 Predicted amidophosphoribosyltransferases gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_69 CH60_690 CH60_690 CH60_690 712699 713547 - iron permease FTR1 family protein [P] COG0672 High-affinity Fe2+/Pb2+ permease gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_690 CH60_691 CH60_691 putP putP 713880 715364 - sodium/proline symporter na_Pro_sym: sodium/proline symporter~[ER] COG0591 Na+/proline symporter gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_691 CH60_692 CH60_692 CH60_692 715394 715564 - putative membrane protein gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_692 CH60_693 CH60_693 CH60_693 715936 719907 + delta-1-pyrroline-5-carboxylate dehydrogenase D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase~[E] COG0506 Proline dehydrogenase gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_693 CH60_694 CH60_694 CH60_694 720413 720706 + hypothetical protein conserved hypothetical protein gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_694 CH60_695 CH60_695 CH60_695 720706 721077 + HTH domain protein [K] COG0640 Predicted transcriptional regulators gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_695 CH60_696 CH60_696 CH60_696 721369 722130 - ABC transporter family protein [E] COG1126 ABC-type polar amino acid transport system%2C ATPase component gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_696 CH60_697 CH60_697 CH60_697 722133 722795 - amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG0765 ABC-type amino acid transport system%2C permease component gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_697 CH60_698 CH60_698 CH60_698 722795 723595 - bacterial extracellular solute-binding s%2C 3 family protein [ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_698 CH60_699 CH60_699 dcyD dcyD 723719 724711 - D-cysteine desulfhydrase [E] COG2515 1-aminocyclopropane-1-carboxylate deaminase gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_699 CH60_7 CH60_7 CH60_7 6002 6994 - branched-chain amino acid transport system / permease component family protein [R] COG4158 Predicted ABC-type sugar transport system%2C permease component gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_7 CH60_70 CH60_70 bioH bioH 87690 88466 + pimelyl-[acyl-carrier protein] methyl ester esterase bioH: pimelyl-[acyl-carrier protein] methyl ester esterase~[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_70 CH60_700 CH60_700 fliZ fliZ 725000 725509 - flagellar regulatory protein FliZ fliZ: flagellar regulatory protein FliZ gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_700 CH60_701 CH60_701 fliA fliA 725731 726453 - RNA polymerase sigma factor for flagellar operon [K] COG1191 DNA-directed RNA polymerase specialized sigma subunit gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_701 CH60_702 CH60_702 CH60_702 726800 727909 - hypothetical protein bacterial flagellin C-terminal helical region family protein~[N] COG1344 Flagellin and related hook-associated proteins gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_702 CH60_703 CH60_703 fliD fliD 728206 729606 + flagellar hook-associated protein 2 [N] COG1345 Flagellar capping protein gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_703 CH60_704 CH60_704 fliS fliS 729617 730015 + flagellar protein FliS fliS: flagellar protein FliS~[NUO] COG1516 Flagellin-specific chaperone FliS gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_704 CH60_705 CH60_705 fliT fliT 730026 730388 + flagellar protein FliT gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_705 CH60_706 CH60_706 CH60_706 730689 731564 + helix-turn-helix domain protein [K] COG2207 AraC-type DNA-binding domain-containing proteins gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_706 CH60_707 CH60_707 CH60_707 731918 733831 + HAMP domain protein [NT] COG0840 Methyl-accepting chemotaxis protein gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_707 CH60_708 CH60_708 CH60_708 733980 734873 + HD domain protein [T] COG2206 HD-GYP domain gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_708 CH60_709 CH60_709 CH60_709 735034 735645 + hhH-GPD superbase excision DNA repair family protein [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_709 CH60_71 CH60_71 CH60_71 88636 88905 + hypothetical protein conserved hypothetical protein gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_71 CH60_710 CH60_710 CH60_710 735831 736307 - death-on-curing family protein DOC_P1: death-on-curing family protein~[R] COG3654 Prophage maintenance system killer protein gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_710 CH60_711 CH60_711 CH60_711 736318 736497 - putative phage protein gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_711 CH60_712 CH60_712 fliE fliE 736917 737228 - flagellar hook-basal body complex protein FliE fliE: flagellar hook-basal body complex protein FliE~[NU] COG1677 Flagellar hook-basal body protein gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_712 CH60_713 CH60_713 fliF fliF 737581 739293 + flagellar M-ring protein FliF fliF: flagellar M-ring protein FliF~[NU] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_713 CH60_714 CH60_714 fliG fliG 739290 740282 + flagellar motor switch protein FliG fliG: flagellar motor switch protein FliG~[N] COG1536 Flagellar motor switch protein gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_714 CH60_715 CH60_715 CH60_715 740275 740991 + flagellar assembly FliH family protein [NU] COG1317 Flagellar biosynthesis/type III secretory pathway protein gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_715 CH60_716 CH60_716 fliI fliI 740930 742408 + flagellar protein export ATPase FliI fliI_clade1: flagellar protein export ATPase FliI~[NU] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_716 CH60_717 CH60_717 fliJ fliJ 742508 742954 + flagellar export protein FliJ flagell_FliJ: flagellar export protein FliJ~[NUO] COG2882 Flagellar biosynthesis chaperone gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_717 CH60_718 CH60_718 CH60_718 742951 744303 + flagellar hook-length control FliK family protein [N] COG3144 Flagellar hook-length control protein gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_718 CH60_719 CH60_719 CH60_719 744570 745040 + flagellar basal body-associated FliL family protein [N] COG1580 Flagellar basal body-associated protein gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_719 CH60_72 CH60_72 feoC feoC 89043 89300 - ferrous iron transport protein C gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_72 CH60_720 CH60_720 fliM fliM 745046 746047 + flagellar motor switch protein FliM fliM_switch: flagellar motor switch protein FliM~[N] COG1868 Flagellar motor switch protein gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_720 CH60_721 CH60_721 fliN fliN 746044 746460 + flagellar motor switch protein FliN fliN: flagellar motor switch protein FliN~[NU] COG1886 Flagellar motor switch/type III secretory pathway protein gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_721 CH60_722 CH60_722 fliO fliO 746460 746996 + flagellar biosynthetic protein FliO fliO_TIGR: flagellar biosynthetic protein FliO~[N] COG3190 Flagellar biogenesis protein gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_722 CH60_723 CH60_723 fliP fliP 746993 747817 + flagellar biosynthetic protein FliP fliP: flagellar biosynthetic protein FliP~[NU] COG1338 Flagellar biosynthesis pathway%2C component FliP gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_723 CH60_724 CH60_724 fliQ fliQ 747923 748192 + flagellar biosynthetic protein FliQ fliQ: flagellar biosynthetic protein FliQ~[NU] COG1987 Flagellar biosynthesis pathway%2C component FliQ gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_724 CH60_725 CH60_725 fliR fliR 748195 748977 + flagellar biosynthetic protein FliR fliR: flagellar biosynthetic protein FliR~[NU] COG1684 Flagellar biosynthesis pathway%2C component FliR gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_725 CH60_726 CH60_726 CH60_726 749184 749366 + ycfA-like family protein [N] COG1724 Predicted periplasmic or secreted lipoprotein gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_726 CH60_727 CH60_727 CH60_727 749411 749830 + hypothetical protein conserved hypothetical protein~[S] COG1598 Uncharacterized conserved protein gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_727 CH60_728 CH60_728 CH60_728 750088 751047 - pfkB carbohydrate kinase family protein [G] COG0524 Sugar kinases%2C ribokinase family gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_728 CH60_729 CH60_729 CH60_729 751096 752118 - branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_729 CH60_73 CH60_73 feoB feoB 89336 91651 - ferrous iron transport protein B feoB: ferrous iron transport protein B~[P] COG0370 Fe2+ transport system protein B gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_73 CH60_730 CH60_730 CH60_730 752121 753698 - ABC transporter family protein [G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_730 CH60_731 CH60_731 CH60_731 753764 754759 - periplasmic binding domain protein [G] COG1879 ABC-type sugar transport system%2C periplasmic component gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_731 CH60_732 CH60_732 CH60_732 754802 755860 - branched-chain amino acid transport system / permease component family protein [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_732 CH60_733 CH60_733 CH60_733 755990 758056 - 3-beta hydroxysteroid dehydrogenase/isomerase family protein [S] COG3347 Uncharacterized conserved protein gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_733 CH60_734 CH60_734 CH60_734 758274 759275 + putative sugar-binding domain protein [K] COG2390 Transcriptional regulator%2C contains sigma factor-related N-terminal domain gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_734 CH60_735 CH60_735 flgL flgL 759304 760284 - flagellar hook-associated protein 3 flagell_flgL: flagellar hook-associated protein 3~[N] COG1344 Flagellin and related hook-associated proteins gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_735 CH60_736 CH60_736 flgK flgK 760423 762087 - flagellar hook-associated protein FlgK flgK_ends: flagellar hook-associated protein FlgK~[N] COG1256 Flagellar hook-associated protein gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_736 CH60_737 CH60_737 flgJ flgJ 762672 763616 - flagellar rod assembly protein/muramidase FlgJ flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ~[MNO] COG3951 Rod binding protein gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_737 CH60_738 CH60_738 CH60_738 763616 764725 - flagellar P-ring family protein [N] COG1706 Flagellar basal-body P-ring protein gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_738 CH60_739 CH60_739 CH60_739 764740 765399 - flagellar L-ring family protein [N] COG2063 Flagellar basal body L-ring protein gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_739 CH60_74 CH60_74 feoA feoA 91743 91970 - ferrous iron transport protein A [P] COG1918 Fe2+ transport system protein A gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_74 CH60_740 CH60_740 flgG flgG 765573 766271 - flagellar basal-body rod protein FlgG flgG_G_neg: flagellar basal-body rod protein FlgG~[N] COG4786 Flagellar basal body rod protein gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_740 CH60_741 CH60_741 CH60_741 766252 766881 - flagellar hook-basal body family protein flgEFG_subfam: flagellar hook-basal body family protein~[N] COG4787 Flagellar basal body rod protein gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_741 CH60_742 CH60_742 CH60_742 766903 768189 - flagellar hook-basal body family protein flgEFG_subfam: flagellar hook-basal body family protein~[N] COG1749 Flagellar hook protein FlgE gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_742 CH60_743 CH60_743 flgD flgD 768391 769068 - basal-body rod modification protein flgD [N] COG1843 Flagellar hook capping protein gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_743 CH60_744 CH60_744 flgC flgC 769083 769487 - flagellar basal-body rod protein FlgC flgC: flagellar basal-body rod protein FlgC~[N] COG1558 Flagellar basal body rod protein gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_744 CH60_745 CH60_745 flgB flgB 769493 769906 - flagellar basal-body rod protein FlgB flgB: flagellar basal-body rod protein FlgB~[N] COG1815 Flagellar basal body protein gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_745 CH60_746 CH60_746 flgA flgA 770145 770843 + flagella basal body P-ring formation protein FlgA flgA_cterm: flagella basal body P-ring formation protein FlgA~[NO] COG1261 Flagellar basal body P-ring biosynthesis protein gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_746 CH60_747 CH60_747 flgM flgM 770994 771296 + flagellar biosynthesis anti-sigma factor FlgM flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM~[KNU] COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor) gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_747 CH60_748 CH60_748 CH60_748 771318 771755 + flgN family protein [NUO] COG3418 Flagellar biosynthesis/type III secretory pathway chaperone gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_748 CH60_749 CH60_749 CH60_749 771945 774017 - bacterial Ig-like domain family protein gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_749 CH60_75 CH60_75 CH60_75 92494 94869 - S1 RNA binding domain protein [K] COG2183 Transcriptional accessory protein gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_75 CH60_750 CH60_750 CH60_750 774107 774565 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_750 CH60_751 CH60_751 CH60_751 774555 775565 - hypothetical protein conserved hypothetical protein gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_751 CH60_752 CH60_752 flhE flhE 776223 776645 - flagellar protein flhE gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_752 CH60_753 CH60_753 flhA flhA 776645 778723 - flagellar biosynthesis protein FlhA flhA: flagellar biosynthesis protein FlhA~[NU] COG1298 Flagellar biosynthesis pathway%2C component FlhA gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_753 CH60_754 CH60_754 flhB flhB 778723 779883 - flagellar biosynthetic protein FlhB flhB: flagellar biosynthetic protein FlhB~[NU] COG1377 Flagellar biosynthesis pathway%2C component FlhB gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_754 CH60_755 CH60_755 CH60_755 780415 780873 + putative membrane protein gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_755 CH60_756 CH60_756 CH60_756 780867 781193 + hypothetical protein conserved hypothetical protein gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_756 CH60_757 CH60_757 CH60_757 781716 782057 - hypothetical protein conserved hypothetical protein gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_757 CH60_758 CH60_758 CH60_758 782154 783038 - copper resistance D family protein [P] COG1276 Putative copper export protein gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_758 CH60_759 CH60_759 CH60_759 783041 783427 - copC domain protein [R] COG2372 Uncharacterized protein%2C homolog of Cu resistance protein CopC gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_759 CH60_76 CH60_76 greB greB 95403 95918 + transcription elongation factor GreB greB: transcription elongation factor GreB~[K] COG0782 Transcription elongation factor gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_76 CH60_760 CH60_760 CH60_760 783842 784351 - ferritin-like domain protein [P] COG1528 Ferritin-like protein gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_760 CH60_761 CH60_761 CH60_761 784752 784982 + DNA polymerase III%2C theta subunit gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_761 CH60_762 CH60_762 pip pip 785042 785992 - prolyl aminopeptidase pro_imino_pep_1: prolyl aminopeptidase~[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_762 CH60_763 CH60_763 CH60_763 786714 788765 - prolyl oligopeptidase family protein [E] COG1770 Protease II gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_763 CH60_764 CH60_764 CH60_764 789075 789485 - yebF-like family protein gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_764 CH60_765 CH60_765 CH60_765 789592 789900 - ASCH domain protein [S] COG3097 Uncharacterized protein conserved in bacteria gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_765 CH60_766 CH60_766 CH60_766 789940 790260 - yebG family protein [S] COG3141 Uncharacterized protein conserved in bacteria gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_766 CH60_767 CH60_767 dbpA dbpA 790354 791736 - ATP-independent RNA helicase dbpA [LKJ] COG0513 Superfamily II DNA and RNA helicases gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_767 CH60_768 CH60_768 purT purT 792049 793230 + phosphoribosylglycinamide formyltransferase 2 purT: phosphoribosylglycinamide formyltransferase 2~[F] COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_768 CH60_769 CH60_769 CH60_769 793356 793613 - hypothetical protein conserved hypothetical protein~[S] COG3140 Uncharacterized protein conserved in bacteria gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_769 CH60_77 CH60_77 ompR ompR 96054 96773 + transcriptional regulatory protein ompR [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_77 CH60_770 CH60_770 pabB pabB 793778 795154 + aminodeoxychorismate synthase%2C component I pabB: aminodeoxychorismate synthase%2C component I~[EH] COG0147 Anthranilate/para-aminobenzoate synthases component I gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_770 CH60_771 CH60_771 CH60_771 795178 795750 + NUDIX domain protein [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_771 CH60_772 CH60_772 CH60_772 796458 797822 + L-serine ammonia-lyase sda_mono: L-serine ammonia-lyase~[E] COG1760 L-serine deaminase gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_772 CH60_773 CH60_773 hpaC hpaC 798102 798599 - 4-hydroxyphenylacetate 3-monooxygenase%2C reductase component hpaC: 4-hydroxyphenylacetate 3-monooxygenase%2C reductase component~[R] COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases%2C DIM6/NTAB family gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_773 CH60_774 CH60_774 hpaB hpaB 798620 800182 - 4-hydroxyphenylacetate 3-monooxygenase%2C oxygenase component hpaB-2: 4-hydroxyphenylacetate 3-monooxygenase%2C oxygenase component~[Q] COG2368 Aromatic ring hydroxylase gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_774 CH60_775 CH60_775 CH60_775 800250 801616 - LPXTG cell wall anchor domain protein%3Bmajor Facilitator Superfamily protein pseudogene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_775 CH60_777 CH60_777 hpaI hpaI 801642 802448 - 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase hpaI: 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase~[G] COG3836 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_777 CH60_778 CH60_778 hpaH hpaH 802459 803262 - 2-oxo-hepta-3-ene-1%2C7-dioic acid hydratase hpaH: 2-oxo-hepta-3-ene-1%2C7-dioic acid hydratase~[Q] COG3971 2-keto-4-pentenoate hydratase gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_778 CH60_779 CH60_779 CH60_779 803256 803654 - 5-carboxymethyl-2-hydroxymuconate isomerase family protein [E] COG3232 5-carboxymethyl-2-hydroxymuconate isomerase gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_779 CH60_78 CH60_78 CH60_78 96770 98122 + HAMP domain protein [T] COG0642 Signal transduction histidine kinase gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_78 CH60_780 CH60_780 hpaD hpaD 803679 804536 - 3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase hpaD_Fe: 3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase~[S] COG3384 Uncharacterized conserved protein gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_780 CH60_781 CH60_781 hpaE hpaE 804655 806052 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase hpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase~[C] COG1012 NAD-dependent aldehyde dehydrogenases gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_781 CH60_782 CH60_782 hpaG hpaG 806049 806813 - 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase hpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase%2C C-terminal subunit~[Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1%2C7-dioic acid hydratase (catechol pathway) gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_782 CH60_783 CH60_783 hpaG hpaG 806810 807442 - 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase hpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase%2C N-terminal subunit~[Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1%2C7-dioic acid hydratase (catechol pathway) gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_783 CH60_784 CH60_784 hpaR hpaR 807826 808293 + homoprotocatechuate degradation operon regulator%2C HpaR hpaR: homoprotocatechuate degradation operon regulator%2C HpaR~[K] COG1846 Transcriptional regulators gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_784 CH60_785 CH60_785 CH60_785 808395 809939 - integral membrane TerC family protein [R] COG1253 Hemolysins and related proteins containing CBS domains gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_785 CH60_786 CH60_786 manX manX 810650 811624 + PTS system mannose-specific EIIAB component [G] COG2893 Phosphotransferase system%2C mannose/fructose-specific component IIA gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_786 CH60_787 CH60_787 CH60_787 811716 812513 + PTS system%2C mannose/fructose/sorbose%2C IIC component family protein EII-Sor: PTS system%2C mannose/fructose/sorbose%2C IIC component family protein~[G] COG3715 Phosphotransferase system%2C mannose/fructose/N-acetylgalactosamine-specific component IIC gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_787 CH60_788 CH60_788 CH60_788 812529 813407 + PTS system%2C mannose/fructose/sorbose%2C IID component family protein EIID-AGA: PTS system%2C mannose/fructose/sorbose%2C IID component family protein~[G] COG3716 Phosphotransferase system%2C mannose/fructose/N-acetylgalactosamine-specific component IID gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_788 CH60_789 CH60_789 CH60_789 813607 814068 + hypothetical protein conserved hypothetical protein~[S] COG4811 Predicted membrane protein gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_789 CH60_79 CH60_79 pckA pckA 98237 99856 - phosphoenolpyruvate carboxykinase pckA: phosphoenolpyruvate carboxykinase~[C] COG1866 Phosphoenolpyruvate carboxykinase (ATP) gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_79 CH60_790 CH60_790 CH60_790 814497 815066 + hypothetical protein conserved hypothetical protein~[S] COG1971 Predicted membrane protein gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_790 CH60_791 CH60_791 fcuA fcuA 815227 817440 - ferrichrome receptor fcuA [P] COG1629 Outer membrane receptor proteins%2C mostly Fe transport gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_791 CH60_792 CH60_792 CH60_792 817548 818570 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_792 CH60_793 CH60_793 CH60_793 818570 819349 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_793 CH60_794 CH60_794 CH60_794 819716 820021 - hypothetical protein conserved hypothetical protein gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_794 CH60_795 CH60_795 CH60_795 820118 820519 - putative Zn-dependent hydrolases of the beta-lactamase fold protein putative predicted Zn-dependent hydrolases of the beta-lactamase fold gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_795 CH60_796 CH60_796 CH60_796 820501 821820 - hypothetical protein conserved hypothetical protein~[I] COG0671 Membrane-associated phospholipid phosphatase gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_796 CH60_797 CH60_797 CH60_797 821813 823576 - alpha/beta hydrolase family protein [QR] COG0500 SAM-dependent methyltransferases gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_797 CH60_798 CH60_798 CH60_798 823573 824205 - acyltransferase family protein [I] COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_798 CH60_799 CH60_799 CH60_799 824215 825144 - cytidylyltransferase family protein [R] COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_799 CH60_8 CH60_8 CH60_8 6987 8507 - ABC transporter family protein [G] COG1129 ABC-type sugar transport system%2C ATPase component gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_8 CH60_80 CH60_80 hslO hslO 100053 100934 - 33 kDa chaperonin [O] COG1281 Disulfide bond chaperones of the HSP33 family gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_80 CH60_800 CH60_800 ynbA ynbA 825137 825739 - inner membrane protein ynbA [I] COG0558 Phosphatidylglycerophosphate synthase gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_800 CH60_801 CH60_801 CH60_801 825966 826142 - rhs element Vgr domain protein gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_801 CH60_802 CH60_802 CH60_802 826139 826384 - hypothetical protein conserved hypothetical protein gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_802 CH60_803 CH60_803 CH60_803 826918 827256 + hypothetical protein conserved hypothetical protein gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_803 CH60_804 CH60_804 CH60_804 827241 827888 + hypothetical protein conserved hypothetical protein gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_804 CH60_805 CH60_805 CH60_805 828707 828783 - tRNA-Arg tRNA gene797 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_805 CH60_806 CH60_806 folD folD 828999 829865 + bifunctional protein FolD protein bifunctional protein FolD~[H] COG0190 5%2C10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_806 CH60_807 CH60_807 CH60_807 829880 830092 + hypothetical protein conserved hypothetical protein~[S] COG2501 Uncharacterized conserved protein gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_807 CH60_808 CH60_808 CH60_808 830239 830697 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_808 CH60_809 CH60_809 CH60_809 830687 830917 - hypothetical protein conserved hypothetical protein gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_809 CH60_81 CH60_81 CH60_81 101097 101504 - S4 domain protein [J] COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_81 CH60_810 CH60_810 cysS cysS 831044 832429 - cysteine--tRNA ligase cysS: cysteine--tRNA ligase~[J] COG0215 Cysteinyl-tRNA synthetase gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_810 CH60_811 CH60_811 ppiB ppiB 832640 833134 + peptidyl-prolyl cis-trans isomerase B [O] COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_811 CH60_812 CH60_812 lpxH lpxH 833145 833867 + UDP-2%2C3-diacylglucosamine diphosphatase lipid_A_lpxH: UDP-2%2C3-diacylglucosamine diphosphatase~[S] COG2908 Uncharacterized protein conserved in bacteria gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_812 CH60_813 CH60_813 purE purE 834163 834687 + phosphoribosylaminoimidazole carboxylase catalytic subunit PurE [F] COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_813 CH60_814 CH60_814 purK purK 834684 835748 + phosphoribosylaminoimidazole carboxylase%2C ATPase subunit purK: phosphoribosylaminoimidazole carboxylase%2C ATPase subunit~[F] COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_814 CH60_815 CH60_815 CH60_815 835792 838221 - ftsX-like permease family protein [Q] COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis%2C permease component gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_815 CH60_816 CH60_816 CH60_816 838218 838904 - ABC transporter family protein [Q] COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis%2C ATPase component gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_816 CH60_817 CH60_817 CH60_817 838938 839510 + GDSL-like Lipase/Acylhydrolase family protein [E] COG2755 Lysophospholipase L1 and related esterases gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_817 CH60_818 CH60_818 CH60_818 839897 840673 + short chain dehydrogenase family protein [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_818 CH60_819 CH60_819 CH60_819 840750 841619 + thioredoxin family protein [O] COG3118 Thioredoxin domain-containing protein gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_819 CH60_82 CH60_82 CH60_82 101533 102213 - HAD hydrolase%2C IA%2C variant 3 family protein HAD-SF-IA-v3: HAD hydrolase%2C IA%2C variant 3 family protein~[R] COG1011 Predicted hydrolase (HAD superfamily) gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_82 CH60_820 CH60_820 CH60_820 841814 842728 + SPFH domain / Band 7 family protein [O] COG0330 Membrane protease subunits%2C stomatin/prohibitin homologs gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_820 CH60_821 CH60_821 ybbJ ybbJ 842731 843180 + inner membrane protein ybbJ [OU] COG1585 Membrane protein implicated in regulation of membrane protease activity gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_821 CH60_822 CH60_822 cueR cueR 843289 843708 - Cu(I)-responsive transcriptional regulator cueR: Cu(I)-responsive transcriptional regulator~[K] COG0789 Predicted transcriptional regulators gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_822 CH60_823 CH60_823 CH60_823 843915 846800 + copper-translocating P-type ATPase ATPase-IB1_Cu: copper-translocating P-type ATPase~[P] COG2217 Cation transport ATPase gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_823 CH60_824 CH60_824 CH60_824 847321 848130 + traB family protein [S] COG3735 Uncharacterized protein conserved in bacteria gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_824 CH60_825 CH60_825 ybaK ybaK 848394 848873 + cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase ybaK [S] COG2606 Uncharacterized conserved protein gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_825 CH60_826 CH60_826 CH60_826 848939 849196 + hypothetical protein conserved hypothetical protein gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_826 CH60_827 CH60_827 CH60_827 849210 849449 + hypothetical protein conserved hypothetical protein gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_827 CH60_828 CH60_828 CH60_828 849553 850176 - hypothetical protein 5'-nucleotidase%2C C-terminal domain protein~[F] COG0737 5'-nucleotidase/2'%2C3'-cyclic phosphodiesterase and related esterases gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_828 CH60_829 CH60_829 CH60_829 850170 850961 - calcineurin-like phosphoesterase family protein [F] COG0737 5'-nucleotidase/2'%2C3'-cyclic phosphodiesterase and related esterases gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_829 CH60_83 CH60_83 CH60_83 102357 104504 - intracellular growth attenuator IgaA family protein gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_83 CH60_830 CH60_830 CH60_830 850951 851208 - putative protein UshA: UDP-sugar hydrolase [F] COG0737 5'-nucleotidase/2'%2C3'-cyclic phosphodiesterase and related esterases gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_830 CH60_831 CH60_831 CH60_831 851490 852704 + major Facilitator Superfamily protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_831 CH60_832 CH60_832 CH60_832 852939 854630 + transporter%2C monovalent cation:proton antiporter-2 family protein 2a37: transporter%2C monovalent cation:proton antiporter-2 family protein~[P] COG4651 Kef-type K+ transport system%2C predicted NAD-binding component gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_832 CH60_833 CH60_833 CH60_833 854727 856031 - pfkB carbohydrate kinase family protein [G] COG0524 Sugar kinases%2C ribokinase family gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_833 CH60_834 CH60_834 CH60_834 856235 857386 - chain length determinant family protein [M] COG3765 Chain length determinant protein gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_834 CH60_835 CH60_835 CH60_835 857434 858807 - phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain III family protein [G] COG1109 Phosphomannomutase gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_835 CH60_836 CH60_836 CH60_836 858812 859555 - glycosyltransferase like 2 family protein [M] COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_836 CH60_837 CH60_837 CH60_837 859558 860964 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase~[M] COG0836 Mannose-1-phosphate guanylyltransferase gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_837 CH60_838 CH60_838 fcl fcl 861172 862137 - GDP-L-fucose synthase [MG] COG0451 Nucleoside-diphosphate-sugar epimerases gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_838 CH60_839 CH60_839 CH60_839 862143 862736 - NAD dependent epimerase/dehydratase family protein [M] COG1089 GDP-D-mannose dehydratase gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_839 CH60_84 CH60_84 CH60_84 104784 104978 + hypothetical protein conserved hypothetical protein gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_84 CH60_840 CH60_840 CH60_840 862747 863265 - rmlD substrate binding domain protein [M] COG1089 GDP-D-mannose dehydratase gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_840 CH60_841 CH60_841 CH60_841 863281 864294 - glycosyl transferases group 1 family protein [M] COG0438 Glycosyltransferase gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_841 CH60_842 CH60_842 CH60_842 864543 865349 - putative o-antigen polymerase gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_842 CH60_843 CH60_843 CH60_843 865324 865764 - putative membrane protein gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_843 CH60_844 CH60_844 CH60_844 865761 866903 - glycosyl transferases group 1 family protein [M] COG0438 Glycosyltransferase gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_844 CH60_845 CH60_845 wbyI wbyI 867075 867317 - glycosyltransferase-like domain protein gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_845 CH60_846 CH60_846 CH60_846 867283 867996 - glycosyl transferase 2 family protein [M] COG0463 Glycosyltransferases involved in cell wall biogenesis gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_846 CH60_847 CH60_847 CH60_847 868007 869349 - putative membrane protein pseudogene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_847 CH60_849 CH60_849 CH60_849 869423 870706 - NAD(P)-binding Rossmann-like domain protein [H] COG1232 Protoporphyrinogen oxidase gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_849 CH60_85 CH60_85 CH60_85 105091 105636 + NUDIX domain protein [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_85 CH60_850 CH60_850 CH60_850 870707 871564 - rmlD substrate binding domain protein [MG] COG0451 Nucleoside-diphosphate-sugar epimerases gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_850 CH60_851 CH60_851 ddhC ddhC 871601 872914 - CDP-4-keto-6-deoxy-D-glucose-3-dehydrase [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_851 CH60_852 CH60_852 rfbG rfbG 872932 874005 - CDP-glucose 4%2C6-dehydratase CDP_4_6_dhtase: CDP-glucose 4%2C6-dehydratase~[MG] COG0451 Nucleoside-diphosphate-sugar epimerases gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_852 CH60_853 CH60_853 rfbF rfbF 874010 874783 - glucose-1-phosphate cytidylyltransferase G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase~[MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B%2C gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_853 CH60_854 CH60_854 ascD ascD 874821 875810 - CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_854 CH60_855 CH60_855 hemH hemH 876408 877367 - ferrochelatase hemH: ferrochelatase~[H] COG0276 Protoheme ferro-lyase (ferrochelatase) gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_855 CH60_856 CH60_856 CH60_856 877460 878104 - adenylate kinase family protein adk: adenylate kinase family protein~[F] COG0563 Adenylate kinase and related kinases gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_856 CH60_857 CH60_857 CH60_857 878331 880199 - hsp90 family protein [O] COG0326 Molecular chaperone%2C HSP90 family gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_857 CH60_858 CH60_858 recR recR 880397 880972 - recombination protein RecR recR: recombination protein RecR~[L] COG0353 Recombinational DNA repair protein (RecF pathway) gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_858 CH60_859 CH60_859 CH60_859 881002 881334 - DNA-binding protein%2C YbaB/EbfC family DNA_YbaB_EbfC: DNA-binding protein%2C YbaB/EbfC family~[S] COG0718 Uncharacterized protein conserved in bacteria gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_859 CH60_86 CH60_86 CH60_86 105772 108327 - penicillin-binding%2C 1A family protein PBP_1a_fam: penicillin-binding%2C 1A family protein~[M] COG5009 Membrane carboxypeptidase/penicillin-binding protein gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_86 CH60_860 CH60_860 dnaX dnaX 881390 883366 - DNA polymerase III%2C subunit gamma and tau dnaX_nterm: DNA polymerase III%2C subunit gamma and tau~[L] COG2812 DNA polymerase III%2C gamma/tau subunits gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_860 CH60_861 CH60_861 apt apt 884007 884570 - adenine phosphoribosyltransferase apt: adenine phosphoribosyltransferase~[F] COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_861 CH60_862 CH60_862 CH60_862 884809 885189 - hypothetical protein conserved hypothetical protein~[S] COG2832 Uncharacterized protein conserved in bacteria gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_862 CH60_863 CH60_863 CH60_863 885390 885926 + primosomal replication priB and priC family protein [L] COG3923 Primosomal replication protein N'' gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_863 CH60_864 CH60_864 CH60_864 886643 890005 - mechanosensitive ion channel family protein [M] COG3264 Small-conductance mechanosensitive channel gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_864 CH60_865 CH60_865 ychN ychN 890301 890654 - protein ychN [P] COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_865 CH60_866 CH60_866 CH60_866 890667 891323 - bacterial regulatory s%2C tetR family protein [K] COG1309 Transcriptional regulator gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_866 CH60_867 CH60_867 CH60_867 891468 892655 + efflux transporter%2C RND family%2C MFP subunit RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_867 CH60_868 CH60_868 CH60_868 892672 895824 + RND transporter%2C hydrophobe/amphiphile efflux-1 family protein 2A0602: RND transporter%2C hydrophobe/amphiphile efflux-1 family protein~[V] COG0841 Cation/multidrug efflux pump gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_868 CH60_869 CH60_869 rpmE rpmE 896010 896270 + ribosomal protein L31 L31: ribosomal protein L31~[J] COG0254 Ribosomal protein L31 gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_869 CH60_87 CH60_87 CH60_87 108447 109343 + putative ATPases of the HSP70 class involved in cell division gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_87 CH60_870 CH60_870 rpmJ rpmJ 896286 896429 + ribosomal protein L36 rpmJ_bact: ribosomal protein L36~[J] COG0257 Ribosomal protein L36 gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_870 CH60_871 CH60_871 CH60_871 897303 897656 + hypothetical protein conserved hypothetical protein gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_871 CH60_872 CH60_872 CH60_872 897815 898183 + biofilm formation regulator YbaJ family protein gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_872 CH60_873 CH60_873 hha hha 898232 898435 + hemolysin expression-modulating protein gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_873 CH60_874 CH60_874 CH60_874 899323 899712 + methylated-DNA--[]-cysteine S-methyltransferase family protein ogt: methylated-DNA--[]-cysteine S-methyltransferase family protein~[L] COG3695 Predicted methylated DNA-protein cysteine methyltransferase gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_874 CH60_875 CH60_875 CH60_875 899848 900369 - type III secretion system lipochaperone family protein [S] COG3126 Uncharacterized protein conserved in bacteria gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_875 CH60_876 CH60_876 tesB tesB 900626 901486 + acyl-CoA thioesterase II tesB: acyl-CoA thioesterase II~[I] COG1946 Acyl-CoA thioesterase gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_876 CH60_877 CH60_877 amt amt 901746 903035 - ammonium transporter family protein amt: ammonium transporter family protein~[P] COG0004 Ammonia permease gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_877 CH60_878 CH60_878 glnK glnK 903123 903413 - nitrogen regulatory protein P-II 2 [E] COG0347 Nitrogen regulatory protein PII gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_878 CH60_879 CH60_879 mdlB mdlB 903827 905650 - multidrug resistance-like ATP-binding protein MdlB [V] COG1132 ABC-type multidrug transport system%2C ATPase and permease components gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_879 CH60_88 CH60_88 CH60_88 109343 109948 + fimbrial assembly family protein [NU] COG3166 Tfp pilus assembly protein PilN gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_88 CH60_880 CH60_880 CH60_880 905643 907409 - ABC transporter family protein [V] COG1132 ABC-type multidrug transport system%2C ATPase and permease components gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_880 CH60_881 CH60_881 CH60_881 907511 907972 - asnC-type helix-turn-helix domain protein [K] COG1522 Transcriptional regulators gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_881 CH60_882 CH60_882 CH60_882 908098 909138 + pyridoxal-phosphate dependent enzyme family protein [E] COG0031 Cysteine synthase gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_882 CH60_883 CH60_883 cof cof 909350 910171 - HMP-PP phosphatase [R] COG0561 Predicted hydrolases of the HAD superfamily gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_883 CH60_884 CH60_884 CH60_884 910276 911979 + bacterial extracellular solute-binding s%2C 5 Middle family protein [R] COG4533 ABC-type uncharacterized transport system%2C periplasmic component gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_884 CH60_885 CH60_885 queC queC 912244 912942 + queuosine biosynthesis protein QueC [R] COG0603 Predicted PP-loop superfamily ATPase gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_885 CH60_886 CH60_886 tesC tesC 913028 913435 - long-chain acyl-CoA thioesterase tesC [R] COG0824 Predicted thioesterase gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_886 CH60_887 CH60_887 CH60_887 913789 914235 - competence ComEA helix-hairpin-helix repeat region domain protein [L] COG1555 DNA uptake protein and related DNA-binding proteins gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_887 CH60_888 CH60_888 CH60_888 914375 916261 - PPIC-type PPIASE domain protein [O] COG0760 Parvulin-like peptidyl-prolyl isomerase gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_888 CH60_889 CH60_889 hupB hupB 916562 916834 - DNA-binding protein HU-beta [L] COG0776 Bacterial nucleoid DNA-binding protein gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_889 CH60_89 CH60_89 CH60_89 109896 110522 + hypothetical protein conserved hypothetical protein gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_89 CH60_890 CH60_890 lon lon 917052 919406 - endopeptidase La lon: endopeptidase La~[O] COG0466 ATP-dependent Lon protease%2C bacterial type gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_890 CH60_891 CH60_891 clpX clpX 919601 920872 - ATP-dependent Clp protease%2C ATP-binding subunit ClpX clpX: ATP-dependent Clp protease%2C ATP-binding subunit ClpX~[O] COG1219 ATP-dependent protease Clp%2C ATPase subunit gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_891 CH60_892 CH60_892 clpP clpP 921078 921701 - ATP-dependent Clp endopeptidase%2C proteolytic subunit ClpP clpP: ATP-dependent Clp endopeptidase%2C proteolytic subunit ClpP~[OU] COG0740 Protease subunit of ATP-dependent Clp proteases gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_892 CH60_893 CH60_893 tig tig 922163 923467 - trigger factor tig: trigger factor~[O] COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_893 CH60_894 CH60_894 CH60_894 923540 923725 - hypothetical protein conserved hypothetical protein gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_894 CH60_895 CH60_895 bolA bolA 923884 924198 - protein BolA [T] COG0271 Stress-induced morphogen (activity unknown) gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_895 CH60_896 CH60_896 CH60_896 924553 925131 + hypothetical protein conserved hypothetical protein~[M] COG3056 Uncharacterized lipoprotein gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_896 CH60_897 CH60_897 CH60_897 925249 926727 + AmpG-like permease family protein 2A0125: AmpG-like permease family protein~[GEPR] COG0477 Permeases of the major facilitator superfamily gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_897 CH60_898 CH60_898 CH60_898 927019 927786 + nucleoside-specific channel-forming%2C Tsx family protein gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_898 CH60_899 CH60_899 cyoA cyoA 928156 929112 + ubiquinol oxidase%2C subunit II cyoA: ubiquinol oxidase%2C subunit II~[C] COG1622 Heme/copper-type cytochrome/quinol oxidases%2C subunit 2 gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_899 CH60_9 CH60_9 CH60_9 8696 11251 + HAMP domain protein [T] COG0642 Signal transduction histidine kinase gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_9 CH60_90 CH60_90 CH60_90 110557 110916 + hypothetical protein conserved hypothetical protein gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_90 CH60_900 CH60_900 cyoB cyoB 929117 931108 + cytochrome o ubiquinol oxidase%2C subunit I cyoB: cytochrome o ubiquinol oxidase%2C subunit I~[C] COG0843 Heme/copper-type cytochrome/quinol oxidases%2C subunit 1 gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_900 CH60_901 CH60_901 cyoC cyoC 931098 931712 + cytochrome o ubiquinol oxidase%2C subunit III cyoC: cytochrome o ubiquinol oxidase%2C subunit III~[C] COG1845 Heme/copper-type cytochrome/quinol oxidase%2C subunit 3 gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_901 CH60_902 CH60_902 cyoD cyoD 931712 932044 + cytochrome o ubiquinol oxidase subunit IV cyoD: cytochrome o ubiquinol oxidase subunit IV~[C] COG3125 Heme/copper-type cytochrome/quinol oxidase%2C subunit 4 gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_902 CH60_903 CH60_903 cyoE cyoE 932058 932945 + protoheme IX farnesyltransferase cyoE_ctaB: protoheme IX farnesyltransferase~[O] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_903 CH60_904 CH60_904 CH60_904 933429 934793 + sugar (and other) transporter family protein [GEPR] COG0477 Permeases of the major facilitator superfamily gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_904 CH60_905 CH60_905 CH60_905 934917 935408 - hypothetical protein conserved hypothetical protein~[S] COG1666 Uncharacterized protein conserved in bacteria gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_905 CH60_906 CH60_906 CH60_906 935640 936551 + 2-dehydropantoate 2-reductase family protein apbA_panE: 2-dehydropantoate 2-reductase family protein~[H] COG1893 Ketopantoate reductase gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_906 CH60_907 CH60_907 yajL yajL 936514 937104 + chaperone protein YajL [R] COG0693 Putative intracellular protease/amidase gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_907 CH60_908 CH60_908 thiI thiI 937172 938623 - tRNA sulfurtransferase ThiI [H] COG0301 Thiamine biosynthesis ATP pyrophosphatase gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_908 CH60_909 CH60_909 xseB xseB 938973 939227 + exodeoxyribonuclease VII%2C small subunit xseB: exodeoxyribonuclease VII%2C small subunit~[L] COG1722 Exonuclease VII small subunit gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_909 CH60_91 CH60_91 pilQ pilQ 111115 112467 + type IV pilus secretin PilQ family protein IV_pilus_PilQ: type IV pilus secretin PilQ family protein~[U] COG4796 Type II secretory pathway%2C component HofQ gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_91 CH60_910 CH60_910 CH60_910 939232 940152 + polyprenyl synthetase family protein [H] COG0142 Geranylgeranyl pyrophosphate synthase gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_910 CH60_911 CH60_911 dxs dxs 940308 942167 + 1-deoxy-D-xylulose-5-phosphate synthase dxs: 1-deoxy-D-xylulose-5-phosphate synthase~[HI] COG1154 Deoxyxylulose-5-phosphate synthase gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_911 CH60_912 CH60_912 CH60_912 942346 942804 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_912 CH60_913 CH60_913 pgpA pgpA 943018 943503 - phosphatidylglycerophosphatase A [I] COG1267 Phosphatidylglycerophosphatase A and related proteins gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_913 CH60_914 CH60_914 thiL thiL 943496 944485 - thiamine-phosphate kinase thiL: thiamine-phosphate kinase~[H] COG0611 Thiamine monophosphate kinase gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_914 CH60_915 CH60_915 nusB nusB 944726 945142 - transcription antitermination factor NusB nusB: transcription antitermination factor NusB~[K] COG0781 Transcription termination factor gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_915 CH60_916 CH60_916 ribH ribH 945163 945633 - 6%2C7-dimethyl-8-ribityllumazine synthase lumazine-synth: 6%2C7-dimethyl-8-ribityllumazine synthase~[H] COG0054 Riboflavin synthase beta-chain gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_916 CH60_917 CH60_917 ribD ribD 945769 946878 - riboflavin biosynthesis protein RibD eubact_ribD: riboflavin biosynthesis protein RibD~[H] COG1985 Pyrimidine reductase%2C riboflavin biosynthesis gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_917 CH60_918 CH60_918 nrdR nrdR 947028 947477 - transcriptional regulator NrdR [K] COG1327 Predicted transcriptional regulator%2C consists of a Zn-ribbon and ATP-cone domains gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_918 CH60_919 CH60_919 CH60_919 947548 948141 - putative membrane protein gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_919 CH60_92 CH60_92 aroK aroK 112816 113337 + shikimate kinase 1 [E] COG0703 Shikimate kinase gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_92 CH60_920 CH60_920 CH60_920 948174 948869 - hypothetical protein conserved hypothetical protein gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_920 CH60_921 CH60_921 CH60_921 949167 949625 - transposase IS200 like family protein [L] COG1943 Transposase and inactivated derivatives gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_921 CH60_922 CH60_922 secF secF 949832 950800 - export membrane protein secF -export membrane protein secF~[U] COG0341 Preprotein translocase subunit SecF gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_922 CH60_923 CH60_923 secD secD 950811 952625 - export membrane protein SecD secD: -export membrane protein SecD~[U] COG0342 Preprotein translocase subunit SecD gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_923 CH60_924 CH60_924 yajC yajC 952686 953021 - preprotein translocase%2C YajC subunit yajC: preprotein translocase%2C YajC subunit~[U] COG1862 Preprotein translocase subunit YajC gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_924 CH60_925 CH60_925 tgt tgt 953133 954257 - tRNA-guanine transglycosylase Q_tRNA_tgt: tRNA-guanine transglycosylase~[J] COG0343 Queuine/archaeosine tRNA-ribosyltransferase gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_925 CH60_926 CH60_926 queA queA 954350 955420 - tRNA ribosyltransferase-isomerase S-adenosylmethionine:tRNA ribosyltransferase-isomerase~queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase~[J] COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_926 CH60_927 CH60_927 CH60_927 955623 956204 + hypothetical protein conserved hypothetical protein~[S] COG3124 Uncharacterized protein conserved in bacteria gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_927 CH60_928 CH60_928 CH60_928 956543 957145 + hypothetical protein C-terminal domain of 1-Cys peroxiredoxin family protein~[O] COG0450 Peroxiredoxin gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_928 CH60_929 CH60_929 CH60_929 957534 957788 + gamma-glutamyltranspeptidase family protein [E] COG0405 Gamma-glutamyltransferase gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_929 CH60_93 CH60_93 aroB aroB 113394 114482 + 3-dehydroquinate synthase aroB: 3-dehydroquinate synthase~[E] COG0337 3-dehydroquinate synthetase gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_93 CH60_930 CH60_930 ggt ggt 957785 959299 + gamma-glutamyltransferase g_glut_trans: gamma-glutamyltransferase~[E] COG0405 Gamma-glutamyltransferase gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_930 CH60_931 CH60_931 CH60_931 959507 960187 - short chain dehydrogenase family protein [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_931 CH60_932 CH60_932 CH60_932 960342 962171 - hypothetical protein alpha amylase%2C N-terminal ig-like domain protein~[G] COG0366 Glycosidases gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_932 CH60_933 CH60_933 CH60_933 962732 964123 - amino acid permease family protein [E] COG1113 Gamma-aminobutyrate permease and related permeases gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_933 CH60_934 CH60_934 brnQ brnQ 964199 965518 - branched-chain amino acid transport system II carrier protein livcs: branched-chain amino acid transport system II carrier protein~[E] COG1114 Branched-chain amino acid permeases gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_934 CH60_935 CH60_935 pstS pstS 965992 967056 - phosphate ABC transporter%2C phosphate-binding protein PstS ptsS_2: phosphate binding family protein~[P] COG0226 ABC-type phosphate transport system%2C periplasmic component gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_935 CH60_936 CH60_936 phoR phoR 967078 968394 - phosphate regulon sensor kinase PhoR phoR_proteo: phosphate regulon sensor kinase PhoR~[T] COG0642 Signal transduction histidine kinase gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_936 CH60_937 CH60_937 phoB phoB 968419 969108 - phosphate regulon transcriptional regulatory protein PhoB phoB: phosphate regulon transcriptional regulatory protein PhoB~[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_937 CH60_938 CH60_938 sbcD sbcD 969376 970620 + exonuclease SbcCD%2C D subunit sbcd: exonuclease SbcCD%2C D subunit~[L] COG0420 DNA repair exonuclease gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_938 CH60_939 CH60_939 CH60_939 970617 974306 + exonuclease SbcC family protein sbcc: exonuclease SbcC family protein~[L] COG0419 ATPase involved in DNA repair gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_939 CH60_94 CH60_94 CH60_94 114736 115725 + sporulation related domain protein [S] COG3266 Uncharacterized protein conserved in bacteria gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_94 CH60_940 CH60_940 CH60_940 974908 975822 - glucokinase family protein [KG] COG1940 Transcriptional regulator/sugar kinase gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_940 CH60_941 CH60_941 CH60_941 976155 977066 + exonuclease%2C RdgC family protein [L] COG2974 DNA recombination-dependent growth factor C gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_941 CH60_942 CH60_942 CH60_942 977302 977589 - hypothetical protein conserved hypothetical protein~[S] COG3123 Uncharacterized protein conserved in bacteria gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_942 CH60_943 CH60_943 aroL aroL 978079 978603 - shikimate kinase 2 [E] COG0703 Shikimate kinase gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_943 CH60_944 CH60_944 CH60_944 978850 979407 - methyltransferase small domain protein [I] COG3963 Phospholipid N-methyltransferase gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_944 CH60_945 CH60_945 CH60_945 980137 980658 - ubiE/COQ5 methyltransferase family protein [QR] COG0500 SAM-dependent methyltransferases gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_945 CH60_946 CH60_946 CH60_946 980904 981158 - putative membrane protein gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_946 CH60_947 CH60_947 ycgR ycgR 981356 982105 - flagellar brake protein YcgR [M] COG5581 Predicted glycosyltransferase gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_947 CH60_948 CH60_948 proA proA 982442 983701 - glutamate-5-semialdehyde dehydrogenase proA: glutamate-5-semialdehyde dehydrogenase~[E] COG0014 Gamma-glutamyl phosphate reductase gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_948 CH60_949 CH60_949 proB proB 983711 984814 - glutamate 5-kinase proB: glutamate 5-kinase~[E] COG0263 Glutamate 5-kinase gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_949 CH60_95 CH60_95 dam dam 115809 116624 + DNA adenine methylase family protein dam: DNA adenine methylase family protein~[L] COG0338 Site-specific DNA methylase gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_95 CH60_950 CH60_950 crl crl 984991 985392 - sigma factor-binding protein crl gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_950 CH60_951 CH60_951 CH60_951 985452 986699 - alpha/beta hydrolase family protein [R] COG1073 Hydrolases of the alpha/beta superfamily gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_951 CH60_952 CH60_952 gpt gpt 986826 987284 - xanthine phosphoribosyltransferase [F] COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_952 CH60_953 CH60_953 CH60_953 987711 988016 + putative membrane protein gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_953 CH60_954 CH60_954 CH60_954 988213 989817 + chitin binding domain protein [S] COG3397 Uncharacterized protein conserved in bacteria gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_954 CH60_955 CH60_955 CH60_955 990277 991062 - lysR substrate binding domain protein [K] COG0583 Transcriptional regulator gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_955 CH60_956 CH60_956 pepD pepD 993063 994523 + Xaa-His dipeptidase family protein aa-his-dipept: Xaa-His dipeptidase family protein~[E] COG2195 Di- and tripeptidases gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_956 CH60_957 CH60_957 dinB dinB 994637 995695 - DNA polymerase IV [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_957 CH60_958 CH60_958 CH60_958 996066 996998 + glycerophosphoryl diester phosphodiesterase family protein [C] COG0584 Glycerophosphoryl diester phosphodiesterase gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_958 CH60_959 CH60_959 CH60_959 997242 997469 - hypothetical protein conserved hypothetical protein~[S] COG2991 Uncharacterized protein conserved in bacteria gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_959 CH60_96 CH60_96 rpe rpe 116927 117604 + ribulose-phosphate 3-epimerase rpe: ribulose-phosphate 3-epimerase~[G] COG0036 Pentose-5-phosphate-3-epimerase gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_96 CH60_960 CH60_960 CH60_960 997482 998504 - apbE family protein [H] COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_960 CH60_961 CH60_961 nqrF nqrF 998545 999768 - ubiquinone oxidoreductase%2C Na(+)-translocating%2C F subunit NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C F subunit~nqrF: NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C F subunit~[C] COG2871 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrF gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_961 CH60_962 CH60_962 nqrE nqrE 999784 1000380 - ubiquinone oxidoreductase%2C Na(+)-translocating%2C E subunit NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C E subunit~nqrE: NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C E subunit~[C] COG2209 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrE gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_962 CH60_963 CH60_963 nqrD nqrD 1000387 1001016 - ubiquinone oxidoreductase%2C Na(+)-translocating%2C D subunit NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C D subunit~nqrD: NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C D subunit~[C] COG1347 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrD gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_963 CH60_964 CH60_964 nqrC nqrC 1001009 1001809 - ubiquinone oxidoreductase%2C Na(+)-translocating%2C C subunit NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C C subunit~nqrC: NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C C subunit~[C] COG2869 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrC gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_964 CH60_965 CH60_965 nqrB nqrB 1001799 1003040 - ubiquinone oxidoreductase%2C Na(+)-translocating%2C B subunit NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C B subunit~nqrB: NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C B subunit~[C] COG1805 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrB gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_965 CH60_966 CH60_966 nqrA nqrA 1003044 1004387 - ubiquinone oxidoreductase%2C Na(+)-translocating%2C A subunit NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C A subunit~nqrA: NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C A subunit~[C] COG1726 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrA gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_966 CH60_967 CH60_967 CH60_967 1005588 1006361 - glutamine amidotransferases class-II family protein [R] COG0121 Predicted glutamine amidotransferase gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_967 CH60_968 CH60_968 CH60_968 1004883 1005623 + L%2CD-transpeptidase catalytic domain protein [S] COG3034 Uncharacterized protein conserved in bacteria gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_968 CH60_969 CH60_969 gmhA gmhA 1006564 1007145 - phosphoheptose isomerase gmhA: phosphoheptose isomerase~[G] COG0279 Phosphoheptose isomerase gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_969 CH60_97 CH60_97 gph gph 117597 118295 + sugar (Glycoside-Pentoside-Hexuronide) transporter PGP_bact: phosphoglycolate phosphatase%2C bacterial~[R] COG0546 Predicted phosphatases gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_97 CH60_970 CH60_970 CH60_970 1007385 1009832 + hypothetical protein acyl-CoA dehydrogenase%2C C-terminal domain protein~[I] COG1960 Acyl-CoA dehydrogenases gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_970 CH60_971 CH60_971 CH60_971 1010004 1010750 - adhesin biosynthesis transcription regulatory family protein gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_971 CH60_972 CH60_972 CH60_972 1010752 1012605 - glycosyl transferase 41 family protein gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_972 CH60_973 CH60_973 CH60_973 1012760 1018492 - hypothetical protein adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein~[U] COG3210 Large exoproteins involved in heme utilization or adhesion gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_973 CH60_974 CH60_974 CH60_974 1018533 1020323 - POTRA domain%2C ShlB-type family protein [U] COG2831 Hemolysin activation/secretion protein gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_974 CH60_975 CH60_975 CH60_975 1021412 1022713 - amidase%2C hydantoinase/carbamoylase family protein hydantase: amidase%2C hydantoinase/carbamoylase family protein~[E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_975 CH60_976 CH60_976 CH60_976 1022713 1023084 - putative purine catabolism protein PucG [E] COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_976 CH60_977 CH60_977 CH60_977 1023241 1024167 + helix-turn-helix family protein [L] COG4584 Transposase and inactivated derivatives gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_977 CH60_978 CH60_978 CH60_978 1024260 1025039 + istB-like ATP binding family protein [L] COG1484 DNA replication protein gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_978 CH60_979 CH60_979 CH60_979 1025175 1025537 + hypothetical protein conserved hypothetical protein~[L] COG0582 Integrase gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_979 CH60_98 CH60_98 trpS trpS 118297 119337 + tryptophan--tRNA ligase trpS: tryptophan--tRNA ligase~[J] COG0180 Tryptophanyl-tRNA synthetase gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_98 CH60_980 CH60_980 CH60_980 1025586 1025849 + transposase family protein [L] COG2801 Transposase and inactivated derivatives gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_980 CH60_981 CH60_981 CH60_981 1026280 1026531 - putative exported protein gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_981 CH60_982 CH60_982 CH60_982 1027242 1028009 + PGAP1-like family protein [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_982 CH60_983 CH60_983 CH60_983 1028059 1028166 + hypothetical protein gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_983 CH60_984 CH60_984 CH60_984 1028341 1028628 + ribbon-helix-helix%2C copG family protein gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_984 CH60_985 CH60_985 CH60_985 1029045 1029572 + flavodoxin flav_long: flavodoxin~[C] COG0716 Flavodoxins gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_985 CH60_986 CH60_986 fur fur 1029939 1030385 + ferric uptake regulation protein [P] COG0735 Fe2+/Zn2+ uptake regulation proteins gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_986 CH60_987 CH60_987 chb chb 1030826 1032889 - chitobiase [G] COG3525 N-acetyl-beta-hexosaminidase gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_987 CH60_988 CH60_988 CH60_988 1032867 1033490 - putative carbohydrate binding domain protein [G] COG3525 N-acetyl-beta-hexosaminidase gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_988 CH60_989 CH60_989 CH60_989 1033818 1035239 - outer membrane porin%2C OprD family protein gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_989 CH60_99 CH60_99 cobA cobA 119474 120886 - uroporphyrinogen-III C-methyltransferase cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase~[H] COG0007 Uroporphyrinogen-III methylase gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_99 CH60_990 CH60_990 glnS glnS 1035945 1037612 - glutamine--tRNA ligase glnS: glutamine--tRNA ligase~[J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_990 CH60_991 CH60_991 nagE nagE 1037827 1039860 - PTS system%2C N-acetylglucosamine-specific IIBC component PTS-II-BC-nag: PTS system%2C N-acetylglucosamine-specific IIBC component~[G] COG1263 Phosphotransferase system IIC components%2C glucose/maltose/N-acetylglucosamine-specific gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_991 CH60_992 CH60_992 nagB nagB 1040260 1041060 + glucosamine-6-phosphate deaminase nagB: glucosamine-6-phosphate deaminase~[G] COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_992 CH60_993 CH60_993 nagA nagA 1041080 1042225 + N-acetylglucosamine-6-phosphate deacetylase nagA: N-acetylglucosamine-6-phosphate deacetylase~[G] COG1820 N-acetylglucosamine-6-phosphate deacetylase gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_993 CH60_994 CH60_994 CH60_994 1042242 1043468 + marR family protein [KG] COG1940 Transcriptional regulator/sugar kinase gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_994 CH60_995 CH60_995 CH60_995 1043541 1044293 + HAD hydrolase%2C IA%2C variant 1 family protein HAD-SF-IA-v1: HAD hydrolase%2C IA%2C variant 1 family protein~[G] COG0647 Predicted sugar phosphatases of the HAD superfamily gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_995 CH60_996 CH60_996 asnB asnB 1044648 1046312 + asparagine synthase asn_synth_AEB: asparagine synthase~[E] COG0367 Asparagine synthase (glutamine-hydrolyzing) gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_996 CH60_997 CH60_997 CH60_997 1046770 1046846 + tRNA-Met tRNA gene988 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_997 CH60_998 CH60_998 CH60_998 1046854 1046938 + tRNA-Leu tRNA gene989 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_998 CH60_999 CH60_999 CH60_999 1046968 1047042 + tRNA-Gln tRNA gene990 http://www.ncbi.nlm.nih.gov/gene/?term=CH60_999