locus-tag	class	description
DJY80_00010	COG0592	DNA-directed DNA polymerase activity
DJY80_00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DJY80_00020	COG0187	DNA topoisomerase II activity
DJY80_00025	COG0561	phosphatase activity
DJY80_00045	COG2423	ornithine cyclodeaminase activity
DJY80_00050	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DJY80_00065	COG5645	(Lipo)protein
DJY80_00085	COG3977	Valine--pyruvate aminotransferase
DJY80_00105	COG0366	Alpha amylase catalytic
DJY80_00125	COG2885	chlorophyll binding
DJY80_00135	COG2818	Glycosylase
DJY80_00160	COG2213	PTS system mannitol-specific
DJY80_00160	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJY80_00170	COG3722	fumarate hydratase activity
DJY80_00195	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
DJY80_00210	COG0437	4 iron, 4 sulfur cluster binding
DJY80_00215	COG2864	formate dehydrogenase
DJY80_00230	COG3276	selenocysteine insertion sequence binding
DJY80_00335	COG3501	Rhs element vgr protein
DJY80_00350	COG3209	COG3209 Rhs family protein
DJY80_00380	COG3501	Rhs element vgr protein
DJY80_00415	COG0673	inositol 2-dehydrogenase activity
DJY80_00420	COG1917	Cupin 2, conserved barrel domain protein
DJY80_00420	COG2207	Transcriptional regulator
DJY80_00425	COG1869	D-ribose catabolic process
DJY80_00430	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJY80_00440	COG0431	NADPH-dependent FMN reductase
DJY80_00445	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DJY80_00455	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DJY80_00470	COG3077	Addiction module antitoxin, RelB DinJ family
DJY80_00475	COG2252	PERMEase
DJY80_00480	COG0025	NhaP-type Na H and K H
DJY80_00490	COG1560	Kdo2-lipid A biosynthetic process
DJY80_00500	COG1129	ABC transporter
DJY80_00505	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJY80_00515	COG1069	ribulokinase activity
DJY80_00525	COG0625	glutathione transferase activity
DJY80_00540	COG1943	Transposase
DJY80_00545	COG1278	Cold shock
DJY80_00550	COG1278	Cold shock
DJY80_00560	COG3133	Outer membrane lipoprotein
DJY80_00565	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DJY80_00575	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DJY80_00605	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
DJY80_00610	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DJY80_00620	COG4145	pantothenate transmembrane transporter activity
DJY80_00625	COG3924	membrane
DJY80_00630	COG0439	Biotin carboxylase
DJY80_00635	COG0511	ligase activity, forming carbon-carbon bonds
DJY80_00650	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
DJY80_00655	COG0604	alcohol dehydrogenase
DJY80_00660	COG2200	EAL domain
DJY80_00660	COG2199	diguanylate cyclase activity
DJY80_00665	COG1077	Cell shape determining protein MreB Mrl
DJY80_00670	COG1792	Involved in formation and maintenance of cell shape
DJY80_00675	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
DJY80_00685	COG1530	ribonuclease E activity
DJY80_00690	COG3164	Protein of unknown function
DJY80_00695	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DJY80_00700	COG0312	modulator of DNA gyrase
DJY80_00770	COG0583	DNA-binding transcription factor activity
DJY80_00800	COG2732	(Barnase) inhibitor
DJY80_00810	COG0312	modulator of DNA gyrase
DJY80_00820	COG3783	Cytochrome b(562)
DJY80_00825	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DJY80_00830	COG0366	Alpha amylase catalytic
DJY80_00835	COG1263	PTS System
DJY80_00835	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DJY80_00840	COG1609	Transcriptional regulator
DJY80_00870	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJY80_00885	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJY80_00895	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
DJY80_00900	COG1137	ATPase activity
DJY80_00905	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
DJY80_00910	COG3117	lipopolysaccharide transmembrane transporter activity
DJY80_00915	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
DJY80_00920	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
DJY80_00920	COG0517	IMP dehydrogenase activity
DJY80_00925	COG0530	calcium, potassium:sodium antiporter activity
DJY80_00930	COG1127	ABC transporter
DJY80_00935	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DJY80_00940	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
DJY80_00945	COG2854	intermembrane phospholipid transfer
DJY80_00950	COG3113	response to antibiotic
DJY80_00955	COG5007	Belongs to the BolA IbaG family
DJY80_00965	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DJY80_00970	COG1943	Transposase
DJY80_00975	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DJY80_00980	COG3105	Protein conserved in bacteria
DJY80_00985	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
DJY80_01005	COG0625	glutathione transferase activity
DJY80_01010	COG2969	positive regulation of protein catabolic process
DJY80_01020	COG0493	'glutamate synthase
DJY80_01025	COG0069	glutamate synthase activity
DJY80_01025	COG0067	glutamate synthase
DJY80_01025	COG0070	glutamate synthase
DJY80_01030	COG1242	4 iron, 4 sulfur cluster binding
DJY80_01040	COG5002	protein histidine kinase activity
DJY80_01040	COG0784	Response regulator, receiver
DJY80_01040	COG2198	Histidine kinase
DJY80_01050	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
DJY80_01060	COG2823	Periplasmic or secreted lipoprotein
DJY80_01080	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
DJY80_01090	COG1741	Belongs to the pirin family
DJY80_01095	COG0583	DNA-binding transcription factor activity
DJY80_01155	COG1879	ABC-type sugar transport system periplasmic component
DJY80_01160	COG1129	ABC transporter
DJY80_01165	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJY80_01170	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJY80_01180	COG3085	chromosome segregation
DJY80_01205	COG3978	acetolactate synthase activity
DJY80_01210	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DJY80_01250	COG0583	DNA-binding transcription factor activity
DJY80_01290	COG3121	Chaperone
DJY80_01305	COG3121	Chaperone
DJY80_01320	COG3328	transposase activity
DJY80_01330	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DJY80_01355	COG3118	belongs to the thioredoxin family
DJY80_01360	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
DJY80_01365	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DJY80_01370	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
DJY80_01375	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
DJY80_01380	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
DJY80_01385	COG1088	dTDP-glucose 4,6-dehydratase activity
DJY80_01390	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
DJY80_01395	COG0456	acetyltransferase
DJY80_01400	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DJY80_01405	COG2244	polysaccharide biosynthetic process
DJY80_01425	COG1113	amino acid transport
DJY80_01450	COG1943	Transposase
DJY80_01460	COG3071	HemY protein
DJY80_01465	COG2959	enzyme of heme biosynthesis
DJY80_01470	COG1587	Uroporphyrinogen-III synthase
DJY80_01485	COG3072	Adenylate cyclase
DJY80_01495	COG5567	small periplasmic lipoprotein
DJY80_01505	COG3159	Protein conserved in bacteria
DJY80_01510	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
DJY80_01515	COG1011	Hydrolase
DJY80_01520	COG0210	DNA helicase
DJY80_01530	COG5441	Belongs to the UPF0261 family
DJY80_01535	COG5564	TIM-barrel signal transduction protein
DJY80_01540	COG0598	Magnesium transport protein CorA
DJY80_01550	COG2050	protein possibly involved in aromatic compounds catabolism
DJY80_01555	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
DJY80_01560	COG0514	ATP-dependent DNA helicase (RecQ)
DJY80_01565	COG1280	lysine exporter protein (LysE YggA)
DJY80_01570	COG1280	lysine exporter protein (LysE YggA)
DJY80_01575	COG2267	carboxylic ester hydrolase activity
DJY80_01580	COG0561	phosphatase activity
DJY80_01590	COG0584	glycerophosphoryl diester phosphodiesterase
DJY80_01605	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
DJY80_01615	COG0247	lactate metabolic process
DJY80_01625	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
DJY80_01640	COG3714	YhhN family
DJY80_01655	COG3776	membrane
DJY80_01660	COG0742	ribosomal rna small subunit methyltransferase
DJY80_01670	COG0552	protein localization to endoplasmic reticulum
DJY80_01670	COG0552	protein localization to endoplasmic reticulum
DJY80_01675	COG2884	Cell division ATP-binding protein ftsE
DJY80_01680	COG2177	Part of the ABC transporter FtsEX involved in
DJY80_01690	COG1943	Transposase
DJY80_01700	COG0683	leucine binding
DJY80_01705	COG0559	Belongs to the binding-protein-dependent transport system permease family
DJY80_01710	COG4177	L-phenylalanine transmembrane transporter activity
DJY80_01715	COG0411	ABC transporter
DJY80_01720	COG0410	ABC transporter
DJY80_01780	COG0584	glycerophosphoryl diester phosphodiesterase
DJY80_01785	COG0679	Auxin Efflux Carrier
DJY80_01795	COG0583	DNA-binding transcription factor activity
DJY80_01805	COG0412	Dienelactone hydrolase
DJY80_01810	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
DJY80_01820	COG1966	Carbon starvation protein
DJY80_01825	COG0586	Pfam SNARE associated Golgi protein
DJY80_01830	COG1322	Protein conserved in bacteria
DJY80_01850	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DJY80_01860	COG0805	protein transport
DJY80_01925	COG1943	Transposase
DJY80_01935	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DJY80_01940	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
DJY80_01975	COG0812	UDP-N-acetylmuramate dehydrogenase activity
DJY80_02030	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DJY80_02035	COG0250	Participates in transcription elongation, termination and antitermination
DJY80_02070	COG1943	Transposase
DJY80_02095	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
DJY80_02105	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
DJY80_02130	COG1515	deoxyribonuclease V activity
DJY80_02135	COG3068	Protein conserved in bacteria
DJY80_02150	COG0151	Belongs to the GarS family
DJY80_02225	COG3162	membrane
DJY80_02235	COG1301	dicarboxylic acid transport
DJY80_02345	COG2391	methyltransferase activity
DJY80_02350	COG0425	Belongs to the sulfur carrier protein TusA family
DJY80_02355	COG0583	DNA-binding transcription factor activity
DJY80_02360	COG0814	amino acid
DJY80_02365	COG0626	cystathionine gamma-synthase activity
DJY80_02375	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJY80_02380	COG4558	Periplasmic binding protein
DJY80_02385	COG3720	iron ion transport
DJY80_02390	COG4771	TonB-dependent receptor
DJY80_02400	COG0702	epimerase
DJY80_02405	COG3721	Heme iron utilization protein
DJY80_02430	COG1358	cellular component organization or biogenesis
DJY80_02490	COG3121	Chaperone
DJY80_02545	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
DJY80_02555	COG0735	belongs to the Fur family
DJY80_02560	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DJY80_02575	COG0305	Participates in initiation and elongation during chromosome replication
DJY80_02580	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DJY80_02585	COG1448	Aminotransferase
DJY80_02590	COG2315	Protein conserved in bacteria
DJY80_02595	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DJY80_02600	COG0629	single-stranded DNA binding
DJY80_02610	COG1454	alcohol dehydrogenase
DJY80_02680	COG1309	transcriptional regulator
DJY80_02690	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
DJY80_02690	COG0493	'glutamate synthase
DJY80_02695	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
DJY80_02700	COG3383	formate dehydrogenase (NAD+) activity
DJY80_02715	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
DJY80_02760	COG2076	Multidrug Resistance protein
DJY80_02765	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
DJY80_02775	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
DJY80_02780	COG1053	succinate dehydrogenase
DJY80_02795	COG1511	domain protein
DJY80_02795	COG3264	Mechanosensitive ion channel
DJY80_02815	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
DJY80_02835	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DJY80_02840	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
DJY80_02840	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DJY80_02845	COG0802	atpase or kinase
DJY80_02850	COG0860	N-Acetylmuramoyl-L-alanine amidase
DJY80_02870	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DJY80_02875	COG0330	HflC and HflK could
DJY80_02880	COG0330	HflC and HflK could
DJY80_02885	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
DJY80_02900	COG0557	exoribonuclease II activity
DJY80_02905	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DJY80_02910	COG1960	acyl-CoA dehydrogenase activity
DJY80_02915	COG3650	response to hydrogen peroxide
DJY80_02935	COG1073	alpha beta
DJY80_02945	COG0360	Binds together with S18 to 16S ribosomal RNA
DJY80_02955	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
DJY80_02965	COG1943	Transposase
DJY80_02975	COG3061	Opacity-associated protein A
DJY80_02980	COG0545	Peptidyl-prolyl cis-trans isomerase
DJY80_02990	COG0737	Belongs to the 5'-nucleotidase family
DJY80_03000	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
DJY80_03010	COG1253	flavin adenine dinucleotide binding
DJY80_03020	COG0729	surface antigen
DJY80_03025	COG2911	Protein conserved in bacteria
DJY80_03030	COG2105	PFAM AIG2 family protein
DJY80_03035	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
DJY80_03045	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DJY80_03070	COG3423	Transcriptional regulator
DJY80_03080	COG0142	geranyltranstransferase activity
DJY80_03095	COG0697	spore germination
DJY80_03105	COG0642	Histidine kinase
DJY80_03110	COG0745	RESPONSE REGULATOR receiver
DJY80_03115	COG2027	D-alanyl-D-alanine carboxypeptidase
DJY80_03120	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DJY80_03125	COG1534	Rna-binding protein
DJY80_03135	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DJY80_03140	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
DJY80_03150	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DJY80_03170	COG0195	Participates in both transcription termination and antitermination
DJY80_03215	COG0513	Belongs to the DEAD box helicase family
DJY80_03240	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DJY80_03250	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJY80_03280	COG3153	acetyltransferase
DJY80_03300	COG1653	transport
DJY80_03310	COG0395	ABC-type sugar transport system, permease component
DJY80_03315	COG3842	ATPase activity
DJY80_03330	COG0702	epimerase
DJY80_03335	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
DJY80_03340	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
DJY80_03345	COG3454	Phosphonate metabolism
DJY80_03350	COG4778	phosphonate C-P lyase system protein PhnL
DJY80_03355	COG4107	phosphonate C-P lyase system protein PhnK
DJY80_03360	COG3627	carbon phosphorus lyase activity
DJY80_03365	COG3626	phosphonate metabolism
DJY80_03370	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
DJY80_03375	COG3624	Phosphonate C-P lyase system protein PhnG
DJY80_03380	COG2188	Transcriptional regulator
DJY80_03395	COG4608	Belongs to the ABC transporter superfamily
DJY80_03400	COG0444	Belongs to the ABC transporter superfamily
DJY80_03405	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DJY80_03410	COG0601	transmembrane transport
DJY80_03420	COG2731	YhcH YjgK YiaL family protein
DJY80_03425	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
DJY80_03430	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
DJY80_03440	COG0525	valine-tRNA ligase activity
DJY80_03445	COG2927	DNA polymerase III (CHI subunit)
DJY80_03455	COG0795	lipopolysaccharide-transporting ATPase activity
DJY80_03460	COG0795	lipopolysaccharide-transporting ATPase activity
DJY80_03470	COG0582	viral genome integration into host DNA
DJY80_03495	COG1943	Transposase
DJY80_03510	COG0237	dephospho-CoA kinase activity
DJY80_03525	COG1459	type II secretion system
DJY80_03530	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
DJY80_03535	COG4969	Belongs to the N-Me-Phe pilin family
DJY80_03545	COG3023	N-Acetylmuramoyl-L-alanine amidase
DJY80_03550	COG3725	Membrane protein required for beta-lactamase induction
DJY80_03555	COG1113	amino acid transport
DJY80_03565	COG2186	Transcriptional regulator
DJY80_03570	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
DJY80_03575	COG0508	dehydrogenase complex catalyzes the overall conversion of
DJY80_03580	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DJY80_03585	COG1943	Transposase
DJY80_03590	COG1049	propionate catabolic process, 2-methylcitrate cycle
DJY80_03600	COG0697	spore germination
DJY80_03620	COG2132	Multicopper oxidase
DJY80_03625	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
DJY80_03630	COG0288	reversible hydration of carbon dioxide
DJY80_03635	COG1131	(ABC) transporter
DJY80_03640	COG0842	Transport permease protein
DJY80_03665	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
DJY80_03670	COG0617	tRNA 3'-terminal CCA addition
DJY80_03675	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DJY80_03685	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
DJY80_03695	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
DJY80_03700	COG1643	Atp-dependent helicase
DJY80_03705	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DJY80_03710	COG1120	ATPase activity
DJY80_03715	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DJY80_03720	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJY80_03740	COG2860	membrane
DJY80_03750	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DJY80_03760	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DJY80_03765	COG3850	Histidine kinase
DJY80_03765	COG2205	protein histidine kinase activity
DJY80_03765	COG3437	response regulator, receiver
DJY80_03765	COG4999	Histidine kinase
DJY80_03775	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
DJY80_03780	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DJY80_03785	COG3956	TIGRFAM MazG family protein
DJY80_03805	COG0602	queuosine metabolic process
DJY80_03810	COG0720	synthase
DJY80_03865	COG0529	Catalyzes the synthesis of activated sulfate
DJY80_03880	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
DJY80_03905	COG1388	LysM domain
DJY80_03905	COG4942	peptidase
DJY80_03910	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DJY80_03915	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
DJY80_03920	COG0698	ribose 5-phosphate isomerase
DJY80_03925	COG1063	alcohol dehydrogenase
DJY80_03930	COG1028	Short-chain dehydrogenase reductase Sdr
DJY80_03935	COG2376	Dihydroxyacetone kinase
DJY80_03950	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
DJY80_03970	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJY80_03975	COG1858	cytochrome C peroxidase
DJY80_03985	COG4771	TonB-dependent receptor
DJY80_03995	COG0024	Methionine aminopeptidase
DJY80_04005	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
DJY80_04005	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
DJY80_04010	COG1070	Carbohydrate kinase
DJY80_04015	COG3623	hexulose-6-phosphate isomerase
DJY80_04020	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJY80_04025	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJY80_04030	COG1129	ABC transporter
DJY80_04035	COG1943	Transposase
DJY80_04040	COG0077	Prephenate dehydratase
DJY80_04040	COG1605	Chorismate mutase
DJY80_04045	COG1605	Chorismate mutase
DJY80_04045	COG0287	Prephenate dehydrogenase
DJY80_04050	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DJY80_04055	COG3279	Response regulator of the LytR AlgR family
DJY80_04065	COG3137	Salt-induced outer membrane protein
DJY80_04110	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DJY80_04115	COG4137	Cytochrome C assembly protein
DJY80_04120	COG4536	flavin adenine dinucleotide binding
DJY80_04125	COG1943	Transposase
DJY80_04135	COG2918	glutathione biosynthetic process
DJY80_04140	COG1238	metal cluster binding
DJY80_04145	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DJY80_04175	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
DJY80_04180	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DJY80_04220	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DJY80_04225	COG3958	Transketolase
DJY80_04230	COG3959	Transketolase, thiamine diphosphate binding domain
DJY80_04235	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJY80_04240	COG1129	ABC transporter
DJY80_04260	COG3783	Cytochrome b(562)
DJY80_04265	COG3038	cytochrome b561
DJY80_04270	COG3381	protein complex oligomerization
DJY80_04275	COG3302	dmso reductase anchor subunit
DJY80_04280	COG0437	4 iron, 4 sulfur cluster binding
DJY80_04285	COG0243	molybdopterin cofactor binding
DJY80_04290	COG0235	Class ii aldolase
DJY80_04295	COG1349	DNA-binding transcription factor activity
DJY80_04305	COG1943	Transposase
DJY80_04310	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
DJY80_04315	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DJY80_04325	COG0564	pseudouridine synthase activity
DJY80_04335	COG0542	response to heat
DJY80_04375	COG5544	Lipoprotein
DJY80_04380	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DJY80_04385	COG0045	succinate-CoA ligase (ADP-forming) activity
DJY80_04385	COG1042	CoA-binding domain protein
DJY80_04385	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DJY80_04395	COG3118	belongs to the thioredoxin family
DJY80_04400	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DJY80_04405	COG2814	Major facilitator Superfamily
DJY80_04410	COG1566	PFAM secretion protein HlyD family protein
DJY80_04415	COG1846	Transcriptional regulator
DJY80_04425	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
DJY80_04430	COG2814	Major facilitator Superfamily
DJY80_04480	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
DJY80_04495	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
DJY80_04520	COG3914	O-linked N-acetylglucosamine transferase SPINDLY family
DJY80_04530	COG1960	acyl-CoA dehydrogenase activity
DJY80_04540	COG0121	glutamine amidotransferase
DJY80_04545	COG3034	peptidoglycan biosynthetic process
DJY80_04555	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
DJY80_04560	COG1805	sodium ion transport
DJY80_04565	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
DJY80_04585	COG1477	protein flavinylation
DJY80_04605	COG2195	Cleaves the N-terminal amino acid of tripeptides
DJY80_04610	COG0583	DNA-binding transcription factor activity
DJY80_04670	COG2226	methyltransferase
DJY80_04700	COG1940	carbohydrate kinase activity
DJY80_04705	COG0419	ATPase involved in DNA repair
DJY80_04710	COG0420	3'-5' exonuclease activity
DJY80_04715	COG0745	RESPONSE REGULATOR receiver
DJY80_04720	COG5002	protein histidine kinase activity
DJY80_04730	COG1114	Component of the transport system for branched-chain amino acids
DJY80_04740	COG0366	Alpha amylase catalytic
DJY80_04765	COG0450	alkyl hydroperoxide reductase
DJY80_04770	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
DJY80_04775	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
DJY80_04785	COG1862	Preprotein translocase
DJY80_04790	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DJY80_04795	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DJY80_04800	COG1943	Transposase
DJY80_04825	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DJY80_04825	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DJY80_04840	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
DJY80_04845	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
DJY80_04850	COG1943	Transposase
DJY80_04860	COG0142	geranyltranstransferase activity
DJY80_04875	COG0693	protein deglycase activity
DJY80_04880	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
DJY80_04895	COG2814	Major facilitator Superfamily
DJY80_04905	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
DJY80_04910	COG1845	cytochrome c oxidase, subunit III
DJY80_04915	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
DJY80_04920	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
DJY80_04930	COG2223	nitrite transmembrane transporter activity
DJY80_04935	COG3056	Lipoprotein
DJY80_04940	COG0271	Belongs to the BolA IbaG family
DJY80_04965	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
DJY80_04970	COG0776	regulation of translation
DJY80_04975	COG1943	Transposase
DJY80_04980	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DJY80_04985	COG1555	photosystem II stabilization
DJY80_04990	COG0824	Thioesterase
DJY80_05000	COG4533	DNA binding
DJY80_05015	COG1522	sequence-specific DNA binding
DJY80_05020	COG1132	(ABC) transporter
DJY80_05025	COG1132	(ABC) transporter
DJY80_05030	COG0347	Belongs to the P(II) protein family
DJY80_05035	COG0004	ammonium transporteR
DJY80_05040	COG1946	Acyl-CoA thioesterase
DJY80_05045	COG3126	Type III secretion system lipoprotein chaperone (YscW)
DJY80_05050	COG3695	enzyme binding
DJY80_05075	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DJY80_05085	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJY80_05090	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJY80_05095	COG1309	transcriptional regulator
DJY80_05100	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
DJY80_05105	COG1196	nuclear chromosome segregation
DJY80_05105	COG3264	Mechanosensitive ion channel
DJY80_05120	COG2832	Protein of unknown function (DUF454)
DJY80_05130	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DJY80_05160	COG0543	2 iron, 2 sulfur cluster binding
DJY80_05160	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJY80_05185	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJY80_05230	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJY80_05250	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
DJY80_05255	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJY80_05260	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DJY80_05260	COG4651	solute:proton antiporter activity
DJY80_05265	COG2223	nitrite transmembrane transporter activity
DJY80_05280	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
DJY80_05285	COG3735	TraB family
DJY80_05290	COG2217	Heavy metal translocating P-type atpase
DJY80_05295	COG0789	Transcriptional regulator
DJY80_05300	COG1585	Membrane protein implicated in regulation of membrane protease activity
DJY80_05305	COG0330	HflC and HflK could
DJY80_05310	COG3118	belongs to the thioredoxin family
DJY80_05315	COG0300	oxidoreductase activity
DJY80_05320	COG2755	lipolytic protein G-D-S-L family
DJY80_05325	COG4181	ATPase activity
DJY80_05330	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
DJY80_05335	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
DJY80_05340	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
DJY80_05355	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DJY80_05365	COG1943	Transposase
DJY80_05370	COG2501	S4 domain
DJY80_05405	COG0582	viral genome integration into host DNA
DJY80_05420	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DJY80_05425	COG4589	Belongs to the CDS family
DJY80_05435	COG2267	carboxylic ester hydrolase activity
DJY80_05440	COG0671	phosphoesterase, PA-phosphatase related
DJY80_05440	COG2453	phosphatase
DJY80_05475	COG0667	Aldo Keto reductase
DJY80_05480	COG0656	L-ascorbic acid biosynthetic process
DJY80_05505	COG3328	transposase activity
DJY80_05560	COG3423	Transcriptional regulator
DJY80_05565	COG4953	penicillin-binding protein 1C
DJY80_05570	COG1943	Transposase
DJY80_05575	COG2373	Large extracellular alpha-helical protein
DJY80_05595	COG3962	Belongs to the TPP enzyme family
DJY80_05605	COG1879	ABC-type sugar transport system periplasmic component
DJY80_05610	COG1129	ABC transporter
DJY80_05615	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJY80_05620	COG0673	inositol 2-dehydrogenase activity
DJY80_05625	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJY80_05635	COG3718	enzyme involved in inositol metabolism
DJY80_05645	COG5265	(ABC) transporter
DJY80_05670	COG2197	response regulator
DJY80_05675	COG1278	Cold shock
DJY80_05680	COG1278	Cold shock
DJY80_05685	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DJY80_05690	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DJY80_05715	COG1686	Belongs to the peptidase S11 family
DJY80_05720	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DJY80_05725	COG0772	Belongs to the SEDS family
DJY80_05730	COG0768	penicillin binding
DJY80_05740	COG0799	negative regulation of ribosome biogenesis
DJY80_05750	COG1466	dna polymerase III delta subunit
DJY80_05765	COG2888	peptidyl-tyrosine sulfation
DJY80_05770	COG1126	abc transporter atp-binding protein
DJY80_05775	COG0765	amino acid transport
DJY80_05780	COG0765	amino acid transport
DJY80_05790	COG0815	Transfers the fatty acyl group on membrane lipoproteins
DJY80_05795	COG4535	Mg2 and Co2 transporter CorC
DJY80_05805	COG1702	phosphate starvation-inducible protein PhoH
DJY80_05815	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DJY80_05855	COG0367	asparagine synthase
DJY80_05860	COG0647	UMP catabolic process
DJY80_05865	COG1846	Transcriptional regulator
DJY80_05865	COG1940	carbohydrate kinase activity
DJY80_05870	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
DJY80_05880	COG1263	PTS System
DJY80_05880	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DJY80_05880	COG2190	(PTS) system
DJY80_05885	COG1943	Transposase
DJY80_05910	COG0735	belongs to the Fur family
DJY80_05930	COG0596	Alpha beta hydrolase
DJY80_05940	COG0582	viral genome integration into host DNA
DJY80_05970	COG2113	Glycine betaine
DJY80_05975	COG4176	ABC-type proline glycine betaine transport system permease component
DJY80_05980	COG4175	Glycine betaine
DJY80_05985	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DJY80_06025	COG1278	Cold shock
DJY80_06030	COG0747	negative chemotaxis
DJY80_06040	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DJY80_06045	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
DJY80_06050	COG1124	(ABC) transporter
DJY80_06080	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
DJY80_06090	COG4413	Urea transporter
DJY80_06095	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
DJY80_06105	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DJY80_06110	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DJY80_06115	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DJY80_06125	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DJY80_06130	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DJY80_06135	COG1447	Phosphotransferase system cellobiose-specific component IIA
DJY80_06140	COG1917	Cupin 2, conserved barrel domain protein
DJY80_06140	COG2169	Transcriptional regulator
DJY80_06165	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
DJY80_06170	COG0033	Phosphoglucomutase
DJY80_06185	COG0745	RESPONSE REGULATOR receiver
DJY80_06190	COG2205	protein histidine kinase activity
DJY80_06230	COG3272	Protein of unknown function (DUF1722)
DJY80_06240	COG5212	phosphodiesterase
DJY80_06245	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DJY80_06255	COG1984	allophanate hydrolase subunit 2
DJY80_06305	COG0513	Belongs to the DEAD box helicase family
DJY80_06315	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
DJY80_06325	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
DJY80_06330	COG3026	antisigma factor binding
DJY80_06335	COG3086	response to oxidative stress
DJY80_06350	COG0681	Belongs to the peptidase S26 family
DJY80_06370	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
DJY80_06380	COG1943	Transposase
DJY80_06385	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DJY80_06390	COG1737	Transcriptional regulator
DJY80_06400	COG0560	Phosphoserine phosphatase
DJY80_06405	COG0590	tRNA wobble adenosine to inosine editing
DJY80_06440	COG1943	Transposase
DJY80_06450	COG2205	protein histidine kinase activity
DJY80_06455	COG3170	Tfp pilus assembly protein FimV
DJY80_06460	COG2204	response regulator
DJY80_06465	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DJY80_06465	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
DJY80_06470	COG0347	Belongs to the P(II) protein family
DJY80_06500	COG1017	nitric oxide dioxygenase activity
DJY80_06500	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJY80_06520	COG2814	Major facilitator Superfamily
DJY80_06525	COG3711	transcriptional antiterminator
DJY80_06530	COG3683	transport system, periplasmic component
DJY80_06535	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
DJY80_06540	COG0483	inositol monophosphate 1-phosphatase activity
DJY80_06555	COG1104	cysteine desulfurase activity
DJY80_06560	COG0822	iron-sulfur transferase activity
DJY80_06585	COG0633	Ferredoxin
DJY80_06590	COG2975	iron-sulfur cluster assembly
DJY80_06615	COG3468	outer membrane autotransporter barrel domain protein
DJY80_06620	COG3468	outer membrane autotransporter barrel domain protein
DJY80_06665	COG2976	Protein conserved in bacteria
DJY80_06670	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DJY80_06685	COG1645	bacterial-type flagellum-dependent swarming motility
DJY80_06695	COG0516	GMP reductase activity
DJY80_06695	COG0517	IMP dehydrogenase activity
DJY80_06705	COG1943	Transposase
DJY80_06730	COG3328	transposase activity
DJY80_06745	COG0351	phosphomethylpyrimidine kinase
DJY80_06775	COG3422	double-strand break repair
DJY80_06780	COG0745	RESPONSE REGULATOR receiver
DJY80_06810	COG3842	ATPase activity
DJY80_06820	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DJY80_06830	COG1176	ABC-type spermidine putrescine transport system, permease component I
DJY80_06835	COG1177	transmembrane transport
DJY80_06840	COG0443	Heat shock 70 kDa protein
DJY80_06845	COG2239	Acts as a magnesium transporter
DJY80_06855	COG0248	Ppx GppA phosphatase
DJY80_06860	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
DJY80_06870	COG0581	inorganic phosphate transmembrane transporter activity
DJY80_06885	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DJY80_06890	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DJY80_06905	COG1943	Transposase
DJY80_06915	COG1393	Belongs to the ArsC family
DJY80_06920	COG4783	chaperone-mediated protein folding
DJY80_06925	COG0628	permease
DJY80_06940	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DJY80_06945	COG2716	regulation of RNA biosynthetic process
DJY80_06955	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
DJY80_06960	COG1943	Transposase
DJY80_06975	COG2321	neutral zinc metallopeptidase
DJY80_07000	COG1876	peptidase activity
DJY80_07010	COG1393	Belongs to the ArsC family
DJY80_07020	COG1840	ABC-type Fe3 transport system, periplasmic component
DJY80_07025	COG1175	transmembrane transport
DJY80_07040	COG3119	arylsulfatase activity
DJY80_07045	COG0641	radical SAM
DJY80_07050	COG1988	membrane-bound metal-dependent
DJY80_07060	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJY80_07070	COG2197	response regulator
DJY80_07075	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
DJY80_07075	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DJY80_07080	COG3062	negative regulation of establishment of protein localization
DJY80_07090	COG3043	anaerobic respiration
DJY80_07095	COG3005	denitrification pathway
DJY80_07155	COG3111	PFAM Bacterial OB fold (BOF) protein
DJY80_07165	COG2837	iron assimilation
DJY80_07170	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DJY80_07180	COG4886	Leucine-rich repeat (LRR) protein
DJY80_07190	COG2731	YhcH YjgK YiaL family protein
DJY80_07200	COG1737	Transcriptional regulator
DJY80_07210	COG4150	thiosulfate binding
DJY80_07215	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
DJY80_07220	COG4208	sulfate ABC transporter
DJY80_07225	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
DJY80_07240	COG0745	RESPONSE REGULATOR receiver
DJY80_07245	COG3850	Histidine kinase
DJY80_07245	COG5002	protein histidine kinase activity
DJY80_07255	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
DJY80_07265	COG0006	proline dipeptidase activity
DJY80_07275	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DJY80_07290	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJY80_07295	COG0745	RESPONSE REGULATOR receiver
DJY80_07300	COG2205	protein histidine kinase activity
DJY80_07315	COG1943	Transposase
DJY80_07320	COG2190	(PTS) system
DJY80_07330	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJY80_07335	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DJY80_07340	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
DJY80_07355	COG3530	Putative quorum-sensing-regulated virulence factor
DJY80_07380	COG1943	Transposase
DJY80_07420	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
DJY80_07435	COG0667	Aldo Keto reductase
DJY80_07460	COG0436	Aminotransferase
DJY80_07470	COG3038	cytochrome b561
DJY80_07500	COG3381	protein complex oligomerization
DJY80_07505	COG3302	dmso reductase anchor subunit
DJY80_07510	COG0437	4 iron, 4 sulfur cluster binding
DJY80_07515	COG0243	molybdopterin cofactor binding
DJY80_07610	COG3121	Chaperone
DJY80_07615	COG3188	usher protein
DJY80_07625	COG3328	transposase activity
DJY80_07630	COG3188	usher protein
DJY80_07690	COG3501	Rhs element vgr protein
DJY80_07720	COG2824	Alkylphosphonate utilization operon protein PhnA
DJY80_07730	COG1704	LemA family
DJY80_07750	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DJY80_07755	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DJY80_07760	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DJY80_07770	COG1138	Cytochrome C-type biogenesis protein
DJY80_07775	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DJY80_07780	COG4235	cytochrome complex assembly
DJY80_07780	COG3088	subunit of a heme lyase
DJY80_07785	COG3088	subunit of a heme lyase
DJY80_07785	COG4235	cytochrome complex assembly
DJY80_07800	COG3691	Protein conserved in bacteria
DJY80_07815	COG2062	phosphohistidine phosphatase, SixA
DJY80_07825	COG2890	protein-(glutamine-N5) methyltransferase activity
DJY80_07840	COG0730	response to heat
DJY80_07845	COG3101	peptidyl-lysine hydroxylation
DJY80_07860	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJY80_07865	COG1794	racemase activity, acting on amino acids and derivatives
DJY80_07880	COG0697	spore germination
DJY80_07895	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DJY80_07905	COG0586	Pfam SNARE associated Golgi protein
DJY80_07915	COG0285	dihydrofolate synthase activity
DJY80_07920	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
DJY80_07925	COG1286	toxin biosynthetic process
DJY80_07930	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
DJY80_07935	COG0163	prenyltransferase activity
DJY80_07940	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJY80_07945	COG4215	(ABC) transporter
DJY80_07950	COG4160	amino acid transport
DJY80_07955	COG4598	ABC transporter
DJY80_07960	COG1090	epimerase
DJY80_07975	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
DJY80_07980	COG3037	sugar-specific permease SgaT UlaA
DJY80_07985	COG3328	transposase activity
DJY80_08005	COG1609	Transcriptional regulator
DJY80_08010	COG0280	phosphate acetyltransferase
DJY80_08010	COG0857	belongs to the CobB CobQ family
DJY80_08030	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DJY80_08035	COG0471	metal ion transport
DJY80_08035	COG0490	domain, Protein
DJY80_08050	COG0436	Aminotransferase
DJY80_08055	COG0583	DNA-binding transcription factor activity
DJY80_08065	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJY80_08075	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
DJY80_08085	COG1034	ATP synthesis coupled electron transport
DJY80_08100	COG0839	Belongs to the complex I subunit 6 family
DJY80_08110	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DJY80_08115	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJY80_08135	COG1028	Short-chain dehydrogenase reductase Sdr
DJY80_08140	COG3265	gluconokinase activity
DJY80_08160	COG1609	Transcriptional regulator
DJY80_08165	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DJY80_08180	COG0129	dihydroxy-acid dehydratase activity
DJY80_08195	COG4575	ribosome binding
DJY80_08205	COG1169	isochorismate synthase
DJY80_08220	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
DJY80_08235	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DJY80_08280	COG1126	abc transporter atp-binding protein
DJY80_08285	COG0765	amino acid transport
DJY80_08290	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJY80_08320	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DJY80_08340	COG1063	alcohol dehydrogenase
DJY80_08345	COG1879	ABC-type sugar transport system periplasmic component
DJY80_08350	COG1129	ABC transporter
DJY80_08355	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJY80_08360	COG1609	Transcriptional regulator
DJY80_08365	COG0583	DNA-binding transcription factor activity
DJY80_08370	COG0473	3-isopropylmalate dehydrogenase activity
DJY80_08380	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DJY80_08390	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJY80_08395	COG2831	hemolysin activation secretion protein
DJY80_08420	COG3210	domain, Protein
DJY80_08440	COG3210	domain, Protein
DJY80_08445	COG3210	domain, Protein
DJY80_08455	COG3842	ATPase activity
DJY80_08465	COG1609	Transcriptional regulator
DJY80_08480	COG0395	ABC-type sugar transport system, permease component
DJY80_08485	COG2152	Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man- Glc) to mannose 1-phosphate (Man1P) and glucose
DJY80_08505	COG0668	transmembrane transport
DJY80_08510	COG1518	maintenance of DNA repeat elements
DJY80_08515	COG1203	CRISPR-associated helicase, Cas3
DJY80_08540	COG0667	Aldo Keto reductase
DJY80_08560	COG0583	DNA-binding transcription factor activity
DJY80_08565	COG2771	luxR family
DJY80_08570	COG3916	Acyl-homoserine-lactone synthase
DJY80_08590	COG0628	permease
DJY80_08610	COG3328	transposase activity
DJY80_08625	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
DJY80_08650	COG3328	transposase activity
DJY80_08655	COG1530	ribonuclease E activity
DJY80_08660	COG0564	pseudouridine synthase activity
DJY80_08670	COG1399	metal-binding, possibly nucleic acid-binding protein
DJY80_08675	COG0333	Belongs to the bacterial ribosomal protein bL32 family
DJY80_08695	COG1028	Short-chain dehydrogenase reductase Sdr
DJY80_08705	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJY80_08710	COG1943	Transposase
DJY80_08715	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DJY80_08720	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
DJY80_08730	COG0470	DNA polymerase III
DJY80_08735	COG0084	hydrolase, TatD family'
DJY80_08740	COG1263	PTS System
DJY80_08740	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DJY80_08745	COG1943	Transposase
DJY80_08750	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DJY80_08755	COG0537	adenosine 5'-monophosphoramidase activity
DJY80_08760	COG5633	Lipoprotein
DJY80_08775	COG1472	Belongs to the glycosyl hydrolase 3 family
DJY80_08785	COG1252	NADH dehydrogenase
DJY80_08805	COG3328	transposase activity
DJY80_08815	COG3134	Outer membrane lipoprotein
DJY80_08820	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
DJY80_08825	COG4591	ABC-type transport system involved in lipoprotein release permease component
DJY80_08835	COG4591	ABC-type transport system involved in lipoprotein release permease component
DJY80_08850	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DJY80_08865	COG2850	peptidyl-arginine hydroxylation
DJY80_08875	COG0745	RESPONSE REGULATOR receiver
DJY80_08885	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DJY80_08905	COG1187	pseudouridine synthase activity
DJY80_08910	COG0538	isocitrate dehydrogenase activity
DJY80_08925	COG0840	transmembrane signaling receptor activity
DJY80_08930	COG0702	epimerase
DJY80_08935	COG1733	regulation of RNA biosynthetic process
DJY80_08955	COG1522	sequence-specific DNA binding
DJY80_08970	COG3321	synthase
DJY80_08970	COG1028	Short-chain dehydrogenase reductase Sdr
DJY80_08970	COG0604	alcohol dehydrogenase
DJY80_08990	COG1278	Cold shock
DJY80_09005	COG1285	pathogenesis
DJY80_09030	COG1360	Flagellar Motor Protein
DJY80_09035	COG2198	Histidine kinase
DJY80_09035	COG0643	Histidine kinase
DJY80_09040	COG0835	chemotaxis
DJY80_09045	COG2271	Major facilitator Superfamily
DJY80_09050	COG0251	oxidation-reduction process
DJY80_09060	COG2964	Protein conserved in bacteria
DJY80_09080	COG0840	transmembrane signaling receptor activity
DJY80_09085	COG0840	transmembrane signaling receptor activity
DJY80_09090	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
DJY80_09100	COG0745	RESPONSE REGULATOR receiver
DJY80_09105	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
DJY80_09115	COG3023	N-Acetylmuramoyl-L-alanine amidase
DJY80_09125	COG5295	Hep Hag repeat protein
DJY80_09135	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DJY80_09190	COG3121	Chaperone
DJY80_09210	COG3008	intermembrane lipid transfer
DJY80_09215	COG2995	paraquat-inducible protein a
DJY80_09220	COG1956	GAF domain-containing protein
DJY80_09230	COG0793	Belongs to the peptidase S41A family
DJY80_09245	COG3539	Fimbrial protein
DJY80_09250	COG3121	Chaperone
DJY80_09265	COG3121	Chaperone
DJY80_09270	COG2814	Major facilitator Superfamily
DJY80_09275	COG0823	Involved in the tonB-independent uptake of proteins
DJY80_09285	COG3023	N-Acetylmuramoyl-L-alanine amidase
DJY80_09295	COG1988	membrane-bound metal-dependent
DJY80_09300	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
DJY80_09305	COG1653	transport
DJY80_09310	COG3842	ATPase activity
DJY80_09315	COG0395	ABC-type sugar transport system, permease component
DJY80_09320	COG1175	transmembrane transport
DJY80_09330	COG1028	Short-chain dehydrogenase reductase Sdr
DJY80_09340	COG1917	Cupin 2, conserved barrel domain protein
DJY80_09345	COG3328	transposase activity
DJY80_09350	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DJY80_09370	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DJY80_09375	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DJY80_09380	COG1121	(ABC) transporter
DJY80_09385	COG0803	Belongs to the bacterial solute-binding protein 9 family
DJY80_09410	COG4249	Peptidase C14 caspase catalytic subunit p20
DJY80_09440	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
DJY80_09445	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DJY80_09445	COG0072	phenylalanine-tRNA ligase activity
DJY80_09450	COG0776	regulation of translation
DJY80_09465	COG0386	Belongs to the glutathione peroxidase family
DJY80_09470	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
DJY80_09515	COG0791	NLP P60 protein
DJY80_09540	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DJY80_09540	COG0574	Belongs to the PEP-utilizing enzyme family
DJY80_09550	COG0628	permease
DJY80_09555	COG0247	lactate metabolic process
DJY80_09555	COG0277	FAD linked oxidase domain protein
DJY80_09560	COG2050	protein possibly involved in aromatic compounds catabolism
DJY80_09570	COG0316	Belongs to the HesB IscA family
DJY80_09575	COG0719	Fe-S assembly protein
DJY80_09580	COG0396	ATPase activity
DJY80_09585	COG0719	Fe-S assembly protein
DJY80_09600	COG1376	ErfK ybiS ycfS ynhG family protein
DJY80_09600	COG1388	LysM domain
DJY80_09615	COG1943	Transposase
DJY80_09620	COG4238	major outer membrane lipoprotein
DJY80_09650	COG0307	riboflavin synthase, alpha
DJY80_09655	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
DJY80_09660	COG2814	Major facilitator Superfamily
DJY80_09665	COG0583	DNA-binding transcription factor activity
DJY80_09680	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
DJY80_09685	COG0791	NLP P60 protein
DJY80_09695	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
DJY80_09705	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DJY80_09710	COG0346	lactoylglutathione lyase activity
DJY80_09720	COG1309	transcriptional regulator
DJY80_09725	COG2194	sulfuric ester hydrolase activity
DJY80_09740	COG3133	Outer membrane lipoprotein
DJY80_09750	COG3895	Periplasmic Protein
DJY80_09770	COG0625	glutathione transferase activity
DJY80_09785	COG3104	oligopeptide transport
DJY80_09790	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DJY80_09790	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DJY80_09795	COG4172	Belongs to the ABC transporter superfamily
DJY80_09805	COG4171	peptide transport system, permease
DJY80_09810	COG4168	peptide transport system, permease
DJY80_09815	COG4166	transmembrane transport
DJY80_09825	COG1943	Transposase
DJY80_09830	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
DJY80_09835	COG1842	Phage shock protein A
DJY80_09845	COG1983	PspC domain protein
DJY80_09855	COG3106	COG3106 Predicted ATPase
DJY80_09895	COG1943	Transposase
DJY80_09900	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
DJY80_09905	COG4948	Mandelate Racemase Muconate Lactonizing
DJY80_09910	COG2866	Carboxypeptidase
DJY80_09915	COG4166	transmembrane transport
DJY80_09935	COG0657	acetylesterase activity
DJY80_09935	COG2755	lipolytic protein G-D-S-L family
DJY80_09945	COG1013	pyruvate-flavodoxin oxidoreductase activity
DJY80_09945	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJY80_09945	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
DJY80_09945	COG0674	pyruvate-flavodoxin oxidoreductase activity
DJY80_09955	COG1285	pathogenesis
DJY80_09960	COG3042	response to heat
DJY80_09965	COG3187	Heat shock protein
DJY80_09970	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DJY80_09975	COG2911	Protein conserved in bacteria
DJY80_09985	COG3784	Protein of unknown function (DUF1318)
DJY80_09990	COG0246	Mannitol dehydrogenase
DJY80_09995	COG2390	Transcriptional regulator
DJY80_10005	COG1643	Atp-dependent helicase
DJY80_10020	COG3591	Belongs to the peptidase S1B family
DJY80_10070	COG1012	belongs to the aldehyde dehydrogenase family
DJY80_10070	COG1454	alcohol dehydrogenase
DJY80_10080	COG2095	MarC family integral membrane protein
DJY80_10090	COG0601	transmembrane transport
DJY80_10095	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DJY80_10100	COG0444	Belongs to the ABC transporter superfamily
DJY80_10105	COG4608	Belongs to the ABC transporter superfamily
DJY80_10145	COG2350	Protein conserved in bacteria
DJY80_10150	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
DJY80_10155	COG3328	transposase activity
DJY80_10160	COG1607	acyl-coa hydrolase
DJY80_10195	COG3047	cAMP biosynthetic process
DJY80_10215	COG0135	phosphoribosylanthranilate isomerase activity
DJY80_10215	COG0134	indole-3-glycerol-phosphate synthase activity
DJY80_10225	COG0512	Glutamine amidotransferase of anthranilate synthase
DJY80_10250	COG0009	L-threonylcarbamoyladenylate synthase
DJY80_10255	COG1187	pseudouridine synthase activity
DJY80_10265	COG1028	Short-chain dehydrogenase reductase Sdr
DJY80_10270	COG0616	signal peptide processing
DJY80_10285	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DJY80_10290	COG0583	DNA-binding transcription factor activity
DJY80_10300	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
DJY80_10305	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DJY80_10310	COG0671	phosphoesterase, PA-phosphatase related
DJY80_10315	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
DJY80_10320	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
DJY80_10335	COG0023	Translation Initiation Factor
DJY80_10355	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DJY80_10360	COG2879	small protein
DJY80_10365	COG1966	Carbon starvation protein
DJY80_10375	COG2271	Major facilitator Superfamily
DJY80_10380	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJY80_10385	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DJY80_10395	COG4659	FMN binding
DJY80_10400	COG4658	electron transport chain
DJY80_10405	COG3708	Transcriptional regulator
DJY80_10405	COG2207	Transcriptional regulator
DJY80_10440	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJY80_10445	COG2274	protein secretion by the type I secretion system
DJY80_10460	COG1879	ABC-type sugar transport system periplasmic component
DJY80_10470	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJY80_10480	COG0673	inositol 2-dehydrogenase activity
DJY80_10485	COG0385	Bile acid
DJY80_10495	COG5339	Protein conserved in bacteria
DJY80_10505	COG0114	fumarate hydratase activity
DJY80_10515	COG2814	Major facilitator Superfamily
DJY80_10520	COG0583	DNA-binding transcription factor activity
DJY80_10525	COG1940	carbohydrate kinase activity
DJY80_10530	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
DJY80_10535	COG0038	chloride channel
DJY80_10545	COG1609	Transcriptional regulator
DJY80_10560	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DJY80_10565	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DJY80_10575	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DJY80_10605	COG0028	Belongs to the TPP enzyme family
DJY80_10610	COG0440	acetolactate synthase activity
DJY80_10615	COG1011	Hydrolase
DJY80_10630	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DJY80_10635	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DJY80_10640	COG0589	response to stress
DJY80_10645	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
DJY80_10650	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
DJY80_10665	COG0531	amino acid
DJY80_10675	COG0745	RESPONSE REGULATOR receiver
DJY80_10680	COG2205	protein histidine kinase activity
DJY80_10685	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
DJY80_10690	COG1943	Transposase
DJY80_10705	COG1435	thymidine kinase activity
DJY80_10720	COG0745	RESPONSE REGULATOR receiver
DJY80_10730	COG0788	formyltetrahydrofolate deformylase activity
DJY80_10735	COG3328	transposase activity
DJY80_10755	COG0583	DNA-binding transcription factor activity
DJY80_10760	COG0708	Exodeoxyribonuclease III
DJY80_10765	COG0494	nUDIX hydrolase
DJY80_10775	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DJY80_10780	COG0709	Synthesizes selenophosphate from selenide and ATP
DJY80_10785	COG0778	Nitroreductase
DJY80_10790	COG0616	signal peptide processing
DJY80_10795	COG0252	asparaginase activity
DJY80_10800	COG1335	isochorismatase
DJY80_10805	COG3139	Protein of unknown function (DUF1315)
DJY80_10825	COG3713	MltA-interacting MipA family protein
DJY80_10835	COG2766	serine protein kinase
DJY80_10850	COG0583	DNA-binding transcription factor activity
DJY80_10860	COG2814	Major facilitator Superfamily
DJY80_10870	COG2719	SpoVR family
DJY80_10905	COG1104	cysteine desulfurase activity
DJY80_10915	COG3328	transposase activity
DJY80_11080	COG3328	transposase activity
DJY80_11175	COG0582	viral genome integration into host DNA
DJY80_11185	COG0179	Fumarylacetoacetate (FAA) hydrolase
DJY80_11190	COG2951	lytic endotransglycosylase activity
DJY80_11205	COG2894	cell division
DJY80_11210	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
DJY80_11215	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
DJY80_11220	COG0318	PFAM AMP-dependent synthetase and ligase
DJY80_11230	COG3065	identical protein binding
DJY80_11240	COG1199	ATP-dependent helicase activity
DJY80_11245	COG0251	oxidation-reduction process
DJY80_11260	COG0800	Aldolase
DJY80_11270	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
DJY80_11275	COG1737	Transcriptional regulator
DJY80_11280	COG0469	pyruvate kinase activity
DJY80_11290	COG1560	Kdo2-lipid A biosynthetic process
DJY80_11295	COG0739	heme binding
DJY80_11300	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
DJY80_11310	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DJY80_11340	COG0494	nUDIX hydrolase
DJY80_11350	COG1801	Protein of unknown function DUF72
DJY80_11355	COG3788	relative of glutathione S-transferase, MAPEG superfamily
DJY80_11375	COG3102	Protein conserved in bacteria
DJY80_11395	COG0728	peptidoglycan biosynthetic process
DJY80_11405	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DJY80_11420	COG3381	protein complex oligomerization
DJY80_11435	COG1940	carbohydrate kinase activity
DJY80_11440	COG0584	glycerophosphoryl diester phosphodiesterase
DJY80_11450	COG1943	Transposase
DJY80_11460	COG1176	ABC-type spermidine putrescine transport system, permease component I
DJY80_11465	COG3833	ABC-type maltose transport systems, permease component
DJY80_11490	COG0659	secondary active sulfate transmembrane transporter activity
DJY80_11500	COG2912	Transglutaminase-like superfamily
DJY80_11505	COG3094	Invasion gene expression up-regulator, SirB
DJY80_11510	COG2890	protein-(glutamine-N5) methyltransferase activity
DJY80_11535	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DJY80_11550	COG0012	GTP binding
DJY80_11605	COG5002	protein histidine kinase activity
DJY80_11645	COG0500	methyltransferase
DJY80_11670	COG3328	transposase activity
DJY80_11715	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJY80_11735	COG0402	S-adenosylhomocysteine deaminase activity
DJY80_11780	COG3188	usher protein
DJY80_11790	COG3121	Chaperone
DJY80_11800	COG0582	viral genome integration into host DNA
DJY80_11805	COG1169	isochorismate synthase
DJY80_11810	COG2814	Major facilitator Superfamily
DJY80_11815	COG1132	(ABC) transporter
DJY80_11830	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DJY80_11830	COG2226	methyltransferase
DJY80_11830	COG3433	isochorismatase activity
DJY80_11850	COG1021	2,3-dihydroxybenzoate-AMP ligase
DJY80_11855	COG4771	TonB-dependent receptor
DJY80_11935	COG0395	ABC-type sugar transport system, permease component
DJY80_11940	COG1175	transmembrane transport
DJY80_11950	COG0673	inositol 2-dehydrogenase activity
DJY80_12105	COG2197	response regulator
DJY80_12115	COG3136	membrane protein required for alginate biosynthesis
DJY80_12140	COG1113	amino acid transport
DJY80_12155	COG2837	iron assimilation
DJY80_12180	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
DJY80_12180	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
DJY80_12180	COG0506	proline dehydrogenase activity
DJY80_12210	COG2515	1-aminocyclopropane-1-carboxylate deaminase
DJY80_12220	COG1191	sigma factor activity
DJY80_12255	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
DJY80_12260	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
DJY80_12265	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
DJY80_12285	COG1677	Flagellar hook-basal body complex protein FliE
DJY80_12295	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
DJY80_12305	COG1157	protein secretion by the type III secretion system
DJY80_12310	COG2882	bacterial-type flagellum organization
DJY80_12320	COG1580	Controls the rotational direction of flagella during chemotaxis
DJY80_12345	COG1987	bacterial-type flagellum assembly
DJY80_12365	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJY80_12370	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJY80_12375	COG1129	ABC transporter
DJY80_12385	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJY80_12390	COG1028	Short-chain dehydrogenase reductase Sdr
DJY80_12390	COG3347	Dehydrogenase
DJY80_12395	COG2390	Transcriptional regulator
DJY80_12405	COG1256	bacterial-type flagellum assembly
DJY80_12425	COG4786	Flagellar basal body rod
DJY80_12435	COG1749	Flagellar hook protein flgE
DJY80_12440	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
DJY80_12445	COG1558	bacterial-type flagellum-dependent cell motility
DJY80_12450	COG1815	bacterial-type flagellum-dependent cell motility
DJY80_12460	COG2747	anti-sigma28 factor FlgM
DJY80_12465	COG3418	PFAM FlgN family protein
DJY80_12475	COG1943	Transposase
DJY80_12490	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DJY80_12495	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DJY80_12525	COG2372	response to copper ion
DJY80_12530	COG1528	Iron-storage protein
DJY80_12545	COG1770	oligopeptidase
DJY80_12560	COG3141	response to X-ray
DJY80_12565	COG0513	Belongs to the DEAD box helicase family
DJY80_12590	COG1760	l-serine dehydratase
DJY80_12595	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DJY80_12600	COG2368	4-hydroxyphenylacetate
DJY80_12615	COG3971	2-oxopent-4-enoate hydratase activity
DJY80_12625	COG3384	dioxygenase
DJY80_12630	COG1012	belongs to the aldehyde dehydrogenase family
DJY80_12645	COG1846	Transcriptional regulator
DJY80_12655	COG1253	flavin adenine dinucleotide binding
DJY80_12660	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJY80_12660	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DJY80_12665	COG3715	PTS system
DJY80_12670	COG3716	PTS system mannose fructose sorbose family IID component
DJY80_12725	COG1132	(ABC) transporter
DJY80_12740	COG2207	Transcriptional regulator
DJY80_12780	COG1113	amino acid transport
DJY80_12800	COG1278	Cold shock
DJY80_12810	COG2226	methyltransferase
DJY80_12855	COG3328	transposase activity
DJY80_12860	COG2223	nitrite transmembrane transporter activity
DJY80_12885	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DJY80_12910	COG3122	Protein conserved in bacteria
DJY80_12930	COG0534	Mate efflux family protein
DJY80_12950	COG4948	Mandelate Racemase Muconate Lactonizing
DJY80_12960	COG1028	Short-chain dehydrogenase reductase Sdr
DJY80_12965	COG3011	Protein conserved in bacteria
DJY80_12970	COG2271	Major facilitator Superfamily
DJY80_12975	COG1388	LysM domain
DJY80_12975	COG1470	cell adhesion involved in biofilm formation
DJY80_12980	COG3328	transposase activity
DJY80_12995	COG2925	Exonuclease
DJY80_13005	COG0531	amino acid
DJY80_13015	COG0371	Dehydrogenase
DJY80_13020	COG1129	ABC transporter
DJY80_13025	COG1129	ABC transporter
DJY80_13030	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJY80_13035	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJY80_13050	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
DJY80_13060	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
DJY80_13060	COG0131	Imidazoleglycerol-phosphate dehydratase
DJY80_13065	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
DJY80_13080	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
DJY80_13080	COG0140	phosphoribosyl-ATP diphosphatase activity
DJY80_13090	COG1210	Utp--glucose-1-phosphate uridylyltransferase
DJY80_13095	COG1210	Utp--glucose-1-phosphate uridylyltransferase
DJY80_13110	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DJY80_13115	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJY80_13120	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJY80_13125	COG1120	ATPase activity
DJY80_13140	COG3486	L-lysine 6-monooxygenase (NADPH) activity
DJY80_13145	COG0076	glutamate decarboxylase activity
DJY80_13150	COG4114	ferric iron reductase
DJY80_13155	COG1253	flavin adenine dinucleotide binding
DJY80_13160	COG2982	Protein involved in outer membrane biogenesis
DJY80_13175	COG0489	protein tyrosine kinase activity
DJY80_13185	COG1943	Transposase
DJY80_13205	COG2814	Major facilitator Superfamily
DJY80_13215	COG1346	cytolysis
DJY80_13230	COG2949	membrane
DJY80_13235	COG4211	Belongs to the binding-protein-dependent transport system permease family
DJY80_13250	COG2311	Membrane
DJY80_13260	COG0477	Major facilitator Superfamily
DJY80_13265	COG0583	DNA-binding transcription factor activity
DJY80_13295	COG1136	(ABC) transporter
DJY80_13305	COG0303	'Molybdopterin
DJY80_13315	COG3328	transposase activity
DJY80_13325	COG0488	(ABC) transporter
DJY80_13455	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
DJY80_13460	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DJY80_13470	COG1028	Short-chain dehydrogenase reductase Sdr
DJY80_13475	COG1024	Enoyl-CoA hydratase
DJY80_13485	COG3425	synthase
DJY80_13490	COG1028	Short-chain dehydrogenase reductase Sdr
DJY80_13495	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJY80_13500	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DJY80_13510	COG1028	Short-chain dehydrogenase reductase Sdr
DJY80_13535	COG2920	part of a sulfur-relay system
DJY80_13555	COG1832	CoA-binding protein
DJY80_13560	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
DJY80_13570	COG0210	DNA helicase
DJY80_13575	COG3304	Inner membrane component domain
DJY80_13580	COG1289	transmembrane transporter activity
DJY80_13585	COG3070	regulator of competence-specific genes
DJY80_13595	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DJY80_13595	COG2885	chlorophyll binding
DJY80_13600	COG1943	Transposase
DJY80_13610	COG1067	ATP-dependent peptidase activity
DJY80_13645	COG1943	Transposase
DJY80_13650	COG3130	regulation of translation
DJY80_13660	COG3009	Protein conserved in bacteria
DJY80_13665	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
DJY80_13665	COG3008	intermembrane lipid transfer
DJY80_13670	COG2995	paraquat-inducible protein a
DJY80_13675	COG0488	(ABC) transporter
DJY80_13685	COG0633	Ferredoxin
DJY80_13685	COG3217	Mosc domain protein beta barrel domain protein
DJY80_13700	COG0308	aminopeptidase N
DJY80_13720	COG1448	Aminotransferase
DJY80_13730	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DJY80_13735	COG3108	Peptidase M15
DJY80_13740	COG2989	Protein conserved in bacteria
DJY80_13745	COG1943	Transposase
DJY80_13755	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
DJY80_13760	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
DJY80_13765	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
DJY80_13780	COG3173	Aminoglycoside phosphotransferase
DJY80_13795	COG2835	tetraacyldisaccharide 4'-kinase activity
DJY80_13800	COG1278	Cold shock
DJY80_13810	COG5383	Protein conserved in bacteria
DJY80_13825	COG2333	competence protein COMEC
DJY80_13825	COG0658	competence protein
DJY80_13840	COG0539	negative regulation of cytoplasmic translation
DJY80_13865	COG5295	Hep Hag repeat protein
DJY80_13865	COG5295	Hep Hag repeat protein
DJY80_13870	COG0252	asparaginase activity
DJY80_13875	COG1944	ATP diphosphatase activity
DJY80_13880	COG2116	formate transmembrane transporter activity
DJY80_13885	COG1882	Formate acetyltransferase
DJY80_13895	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DJY80_13925	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DJY80_13935	COG3107	peptidoglycan biosynthetic process
DJY80_13935	COG1674	ftsk spoiiie
DJY80_13945	COG0492	ferredoxin-NADP+ reductase activity
DJY80_13955	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
DJY80_13965	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
DJY80_13975	COG1943	Transposase
DJY80_13980	COG0542	response to heat
DJY80_13995	COG1278	Cold shock
DJY80_14005	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJY80_14010	COG2990	Protein conserved in bacteria
DJY80_14015	COG3593	DNA synthesis involved in DNA repair
DJY80_14020	COG2431	L-lysine efflux transmembrane transporter activity
DJY80_14030	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJY80_14035	COG0028	Belongs to the TPP enzyme family
DJY80_14045	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
DJY80_14050	COG0702	epimerase
DJY80_14055	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJY80_14065	COG1605	Chorismate mutase
DJY80_14070	COG1126	abc transporter atp-binding protein
DJY80_14075	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJY80_14080	COG4215	(ABC) transporter
DJY80_14085	COG4160	amino acid transport
DJY80_14105	COG1120	ATPase activity
DJY80_14110	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJY80_14115	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJY80_14140	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJY80_14155	COG1177	transmembrane transport
DJY80_14160	COG1176	ABC-type spermidine putrescine transport system, permease component I
DJY80_14165	COG3842	ATPase activity
DJY80_14170	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
DJY80_14190	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DJY80_14195	COG2985	domain, Protein
DJY80_14195	COG0569	domain protein
DJY80_14205	COG0671	phosphoesterase, PA-phosphatase related
DJY80_14210	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
DJY80_14215	COG1349	DNA-binding transcription factor activity
DJY80_14220	COG0814	amino acid
DJY80_14225	COG1686	Belongs to the peptidase S11 family
DJY80_14230	COG2011	ABC-type metal ion transport system permease component
DJY80_14255	COG0625	glutathione transferase activity
DJY80_14265	COG4771	TonB-dependent receptor
DJY80_14275	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJY80_14285	COG0833	amino acid
DJY80_14290	COG0583	DNA-binding transcription factor activity
DJY80_14295	COG2855	membrane
DJY80_14305	COG3188	usher protein
DJY80_14310	COG3121	Chaperone
DJY80_14325	COG3710	Transcriptional regulator
DJY80_14330	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DJY80_14330	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DJY80_14330	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
DJY80_14335	COG1105	Belongs to the carbohydrate kinase PfkB family
DJY80_14345	COG0494	nUDIX hydrolase
DJY80_14350	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJY80_14355	COG1129	ABC transporter
DJY80_14365	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
DJY80_14390	COG1028	Short-chain dehydrogenase reductase Sdr
DJY80_14410	COG1312	Catalyzes the dehydration of D-mannonate
DJY80_14415	COG0246	Mannitol dehydrogenase
DJY80_14420	COG2186	Transcriptional regulator
DJY80_14430	COG0523	cobalamin synthesis protein
DJY80_14435	COG0671	phosphoesterase, PA-phosphatase related
DJY80_14440	COG0791	NLP P60 protein
DJY80_14445	COG2200	EAL domain
DJY80_14450	COG4166	transmembrane transport
DJY80_14455	COG4174	ABC transporter (Permease)
DJY80_14460	COG4239	(ABC) transporter, permease
DJY80_14465	COG4172	Belongs to the ABC transporter superfamily
DJY80_14475	COG2814	Major facilitator Superfamily
DJY80_14480	COG1187	pseudouridine synthase activity
DJY80_14485	COG1061	Type III restriction enzyme res subunit
DJY80_14500	COG1943	Transposase
DJY80_14510	COG3082	Protein of unknown function (DUF1414)
DJY80_14515	COG3083	sulfuric ester hydrolase activity
DJY80_14535	COG3157	Type VI secretion system effector, Hcp
DJY80_14565	COG2723	6-phospho-beta-galactosidase activity
DJY80_14570	COG1737	Transcriptional regulator
DJY80_14590	COG3299	homolog of phage Mu protein gp47
DJY80_14630	COG4386	tail sheath protein
DJY80_14650	COG3622	Belongs to the hyi family
DJY80_14655	COG1349	DNA-binding transcription factor activity
DJY80_14660	COG0235	Class ii aldolase
DJY80_14665	COG3395	kinase activity
DJY80_14710	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DJY80_14730	COG1943	Transposase
DJY80_14735	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
DJY80_14740	COG2223	nitrite transmembrane transporter activity
DJY80_14745	COG2198	Histidine kinase
DJY80_14745	COG0642	Histidine kinase
DJY80_14750	COG2198	Histidine kinase
DJY80_14750	COG0642	Histidine kinase
DJY80_14760	COG2205	protein histidine kinase activity
DJY80_14760	COG0784	Response regulator, receiver
DJY80_14785	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJY80_14800	COG0814	amino acid
DJY80_14830	COG0697	spore germination
DJY80_14840	COG1982	Orn Lys Arg decarboxylase major
DJY80_14845	COG0531	amino acid
DJY80_14850	COG1174	glycine betaine transport
DJY80_14855	COG1125	glycine betaine transport
DJY80_14860	COG1174	glycine betaine transport
DJY80_14870	COG2897	thiosulfate sulfurtransferase activity
DJY80_14885	COG0410	ABC transporter
DJY80_14890	COG1122	ATPase activity
DJY80_14910	COG4807	Protein conserved in bacteria
DJY80_14925	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
DJY80_14935	COG2261	transglycosylase associated protein
DJY80_14945	COG1403	HNH endonuclease
DJY80_14955	COG0277	FAD linked oxidase domain protein
DJY80_14960	COG1686	Belongs to the peptidase S11 family
DJY80_14970	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DJY80_15035	COG0513	Belongs to the DEAD box helicase family
DJY80_15040	COG1309	transcriptional regulator
DJY80_15050	COG1131	(ABC) transporter
DJY80_15055	COG0842	Transport permease protein
DJY80_15060	COG0842	Transport permease protein
DJY80_15080	COG1902	pentaerythritol trinitrate reductase activity
DJY80_15105	COG1943	Transposase
DJY80_15115	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
DJY80_15125	COG0583	DNA-binding transcription factor activity
DJY80_15130	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DJY80_15150	COG1943	Transposase
DJY80_15155	COG0670	Belongs to the BI1 family
DJY80_15160	COG0314	molybdopterin synthase activity
DJY80_15165	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
DJY80_15175	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
DJY80_15180	COG0391	Required for morphogenesis under gluconeogenic growth conditions
DJY80_15185	COG4628	conserved protein (DUF2132)
DJY80_15190	COG0556	nucleotide-excision repair
DJY80_15200	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
DJY80_15205	COG2226	methyltransferase
DJY80_15230	COG0561	phosphatase activity
DJY80_15240	COG4149	molybdate abc transporter
DJY80_15245	COG0725	ABC transporter, periplasmic molybdate-binding protein
DJY80_15255	COG2005	Transcriptional regulator
DJY80_15255	COG3585	molybdate ion transport
DJY80_15265	COG1119	ATPase activity
DJY80_15275	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DJY80_15280	COG1085	galactose-1-phosphate uridylyltransferase
DJY80_15295	COG2017	converts alpha-aldose to the beta-anomer
DJY80_15310	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DJY80_15315	COG1230	cation diffusion facilitator family transporter
DJY80_15345	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
DJY80_15350	COG2885	chlorophyll binding
DJY80_15360	COG3064	Membrane
DJY80_15360	COG3064	Membrane
DJY80_15365	COG0848	biopolymer transport protein
DJY80_15370	COG0811	peptide transport
DJY80_15375	COG0824	Thioesterase
DJY80_15380	COG3790	cyd operon protein YbgE
DJY80_15385	COG4890	Cyd operon protein YbgT
DJY80_15390	COG1294	oxidase, subunit
DJY80_15395	COG1271	oxidase subunit
DJY80_15400	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
DJY80_15410	COG0508	dehydrogenase complex catalyzes the overall conversion of
DJY80_15415	COG0567	Dehydrogenase, E1 component
DJY80_15425	COG1053	succinate dehydrogenase
DJY80_15430	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
DJY80_15435	COG2009	succinate dehydrogenase
DJY80_15450	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
DJY80_15455	COG0497	DNA recombination
DJY80_15460	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DJY80_15470	COG2867	negative regulation of translational initiation
DJY80_15485	COG1943	Transposase
DJY80_15495	COG0582	viral genome integration into host DNA
DJY80_15555	COG3657	addiction module killer protein
DJY80_15580	COG1953	Uracil, thiamine, allantoin
DJY80_15590	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DJY80_15600	COG2226	methyltransferase
DJY80_15610	COG0741	lytic transglycosylase activity
DJY80_15610	COG1388	LysM domain
DJY80_15625	COG0656	L-ascorbic acid biosynthetic process
DJY80_15660	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
DJY80_15670	COG2011	ABC-type metal ion transport system permease component
DJY80_15675	COG1464	Belongs to the NlpA lipoprotein family
DJY80_15685	COG1720	tRNA m6t6A37 methyltransferase activity
DJY80_15695	COG3015	lipoprotein NlpE involved in copper resistance
DJY80_15705	COG4681	YaeQ
DJY80_15715	COG4568	rho-dependent transcription termination
DJY80_15725	COG0037	tRNA processing
DJY80_15730	COG0346	lactoylglutathione lyase activity
DJY80_15740	COG0587	DNA-directed DNA polymerase activity
DJY80_15750	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DJY80_15770	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
DJY80_15780	COG0750	zinc metalloprotease
DJY80_15785	COG0575	Belongs to the CDS family
DJY80_15790	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DJY80_15825	COG0024	Methionine aminopeptidase
DJY80_15850	COG0564	pseudouridine synthase activity
DJY80_15855	COG3098	single-species biofilm formation
DJY80_15860	COG1943	Transposase
DJY80_15875	COG1611	Belongs to the LOG family
DJY80_15885	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DJY80_15895	COG2363	Small membrane protein
DJY80_15900	COG0583	DNA-binding transcription factor activity
DJY80_15910	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DJY80_15915	COG2166	iron-sulfur cluster assembly
DJY80_15920	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
DJY80_15925	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
DJY80_15940	COG0860	N-Acetylmuramoyl-L-alanine amidase
DJY80_15950	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DJY80_15955	COG1074	ATP-dependent DNA helicase activity
DJY80_15980	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
DJY80_16045	COG0667	Aldo Keto reductase
DJY80_16075	COG1609	Transcriptional regulator
DJY80_16080	COG0019	diaminopimelate decarboxylase activity
DJY80_16085	COG0583	DNA-binding transcription factor activity
DJY80_16090	COG2814	Major facilitator Superfamily
DJY80_16095	COG0583	DNA-binding transcription factor activity
DJY80_16110	COG0840	transmembrane signaling receptor activity
DJY80_16155	COG2165	general secretion pathway protein
DJY80_16205	COG0288	reversible hydration of carbon dioxide
DJY80_16245	COG1943	Transposase
DJY80_16250	COG3119	arylsulfatase activity
DJY80_16255	COG1349	DNA-binding transcription factor activity
DJY80_16265	COG2222	sugar isomerase
DJY80_16270	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DJY80_16275	COG3715	PTS system
DJY80_16280	COG3716	PTS system mannose fructose sorbose family IID component
DJY80_16285	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJY80_16295	COG1028	Short-chain dehydrogenase reductase Sdr
DJY80_16305	COG0641	radical SAM
DJY80_16310	COG3119	arylsulfatase activity
DJY80_16320	COG0191	fructose-bisphosphate aldolase activity
DJY80_16340	COG2271	Major facilitator Superfamily
DJY80_16360	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DJY80_16360	COG1263	PTS System
DJY80_16365	COG1874	Beta-galactosidase
DJY80_16370	COG3867	Arabinogalactan endo-beta-1,4-galactanase
DJY80_16375	COG3833	ABC-type maltose transport systems, permease component
DJY80_16380	COG1175	transmembrane transport
DJY80_16385	COG2182	Extracellular solute-binding protein
DJY80_16395	COG1129	ABC transporter
DJY80_16400	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJY80_16405	COG1879	ABC-type sugar transport system periplasmic component
DJY80_16415	COG0791	NLP P60 protein
DJY80_16420	COG1695	Transcriptional regulator
DJY80_16510	COG2944	sequence-specific DNA binding
DJY80_16535	COG0582	viral genome integration into host DNA
DJY80_16555	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
DJY80_16560	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DJY80_16565	COG4974	Belongs to the 'phage' integrase family
DJY80_16570	COG0716	FMN binding
DJY80_16575	COG4452	Inner membrane protein CreD
DJY80_16580	COG2205	protein histidine kinase activity
DJY80_16585	COG0745	RESPONSE REGULATOR receiver
DJY80_16595	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
DJY80_16610	COG1272	protein, Hemolysin III
DJY80_16655	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DJY80_16660	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DJY80_16665	COG0006	proline dipeptidase activity
DJY80_16685	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
DJY80_16690	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DJY80_16695	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
DJY80_16725	COG0191	fructose-bisphosphate aldolase activity
DJY80_16760	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
DJY80_16765	COG0501	Belongs to the peptidase M48B family
DJY80_16780	COG1166	arginine decarboxylase activity
DJY80_16795	COG2356	endonuclease I
DJY80_16800	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DJY80_16805	COG0189	ligase activity
DJY80_16820	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DJY80_16830	COG2805	Type II/IV secretion system protein
DJY80_16835	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
DJY80_16840	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
DJY80_16850	COG0762	integral membrane protein
DJY80_16860	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
DJY80_16865	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DJY80_16870	COG1073	alpha beta
DJY80_16870	COG3064	Membrane
DJY80_16870	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
DJY80_16880	COG2066	Belongs to the glutaminase family
DJY80_16885	COG3171	Protein conserved in bacteria
DJY80_16895	COG1194	a g-specific adenine glycosylase
DJY80_16915	COG4774	siderophore transport
DJY80_16920	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJY80_16925	COG1129	ABC transporter
DJY80_16930	COG1879	ABC-type sugar transport system periplasmic component
DJY80_16935	COG1982	Orn Lys Arg decarboxylase major
DJY80_17065	COG3916	Acyl-homoserine-lactone synthase
DJY80_17070	COG2771	luxR family
DJY80_17120	COG2211	Major facilitator Superfamily
DJY80_17140	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJY80_17195	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
DJY80_17200	COG2195	Cleaves the N-terminal amino acid of tripeptides
DJY80_17205	COG4771	TonB-dependent receptor
DJY80_17225	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DJY80_17225	COG3433	isochorismatase activity
DJY80_17225	COG2226	methyltransferase
DJY80_17230	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DJY80_17265	COG1132	(ABC) transporter
DJY80_17280	COG2610	gluconate transmembrane transporter activity
DJY80_17295	COG3501	Rhs element vgr protein
DJY80_17305	COG3209	COG3209 Rhs family protein
DJY80_17325	COG0471	metal ion transport
DJY80_17350	COG3710	Transcriptional regulator
DJY80_17370	COG1256	bacterial-type flagellum assembly
DJY80_17380	COG1706	bacterial-type flagellum-dependent cell motility
DJY80_17385	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
DJY80_17390	COG4786	Flagellar basal body rod
DJY80_17395	COG4787	bacterial-type flagellum-dependent cell motility
DJY80_17400	COG1749	Flagellar hook protein flgE
DJY80_17405	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
DJY80_17410	COG1558	bacterial-type flagellum-dependent cell motility
DJY80_17415	COG1815	bacterial-type flagellum-dependent cell motility
DJY80_17420	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
DJY80_17465	COG2204	response regulator
DJY80_17485	COG1987	bacterial-type flagellum assembly
DJY80_17490	COG1684	flagellar biosynthetic protein fliR
DJY80_17495	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DJY80_17515	COG4592	Periplasmic binding protein
DJY80_17535	COG1943	Transposase
DJY80_17550	COG4964	Belongs to the GSP D family
DJY80_17555	COG4964	Belongs to the GSP D family
DJY80_17610	COG0848	biopolymer transport protein
DJY80_17615	COG0811	peptide transport
DJY80_17620	COG0626	cystathionine gamma-synthase activity
DJY80_17625	COG0586	Pfam SNARE associated Golgi protein
DJY80_17630	COG2207	Transcriptional regulator
DJY80_17635	COG1979	alcohol dehydrogenase
DJY80_17645	COG0656	L-ascorbic acid biosynthetic process
DJY80_17660	COG2132	Multicopper oxidase
DJY80_17670	COG0204	Acyl-transferase
DJY80_17675	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
DJY80_17690	COG0583	DNA-binding transcription factor activity
DJY80_17695	COG0187	DNA topoisomerase II activity
DJY80_17700	COG3150	esterase
DJY80_17705	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
DJY80_17710	COG3151	Protein conserved in bacteria
DJY80_17715	COG0494	nUDIX hydrolase
DJY80_17720	COG1538	Outer membrane efflux protein
DJY80_17735	COG0754	glutathionylspermidine amidase activity
DJY80_17740	COG3384	dioxygenase
DJY80_17760	COG0531	amino acid
DJY80_17775	COG3025	triphosphatase activity
DJY80_17780	COG4991	sh3 domain protein
DJY80_17795	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
DJY80_17820	COG0358	DNA primase activity
DJY80_17825	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DJY80_17905	COG0251	oxidation-reduction process
DJY80_17950	COG1289	transmembrane transporter activity
DJY80_17970	COG0395	ABC-type sugar transport system, permease component
DJY80_17980	COG1653	transport
DJY80_17985	COG1609	Transcriptional regulator
DJY80_17990	COG3459	Glycosyltransferase 36 associated
DJY80_17995	COG3842	ATPase activity
DJY80_18015	COG3210	domain, Protein
DJY80_18020	COG3210	domain, Protein
DJY80_18045	COG3210	domain, Protein
DJY80_18050	COG2831	hemolysin activation secretion protein
DJY80_18055	COG4245	von Willebrand factor, type A
DJY80_18070	COG4245	von Willebrand factor, type A
DJY80_18090	COG3247	response to pH
DJY80_18095	COG1902	pentaerythritol trinitrate reductase activity
DJY80_18095	COG0446	pyridine nucleotide-disulphide oxidoreductase
DJY80_18110	COG1451	nucleotide metabolic process
DJY80_18115	COG0673	inositol 2-dehydrogenase activity
DJY80_18125	COG1943	Transposase
DJY80_18135	COG2721	sulfolactate sulfo-lyase activity
DJY80_18140	COG0246	Mannitol dehydrogenase
DJY80_18150	COG2271	Major facilitator Superfamily
DJY80_18165	COG0586	Pfam SNARE associated Golgi protein
DJY80_18185	COG4575	ribosome binding
DJY80_18190	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
DJY80_18200	COG2259	Doxx family
DJY80_18220	COG0494	nUDIX hydrolase
DJY80_18250	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DJY80_18255	COG0849	cell division
DJY80_18260	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
DJY80_18280	COG0772	Belongs to the SEDS family
DJY80_18295	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
DJY80_18300	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DJY80_18305	COG0768	penicillin binding
DJY80_18310	COG3116	cell division
DJY80_18335	COG1609	Transcriptional regulator
DJY80_18345	COG1943	Transposase
DJY80_18355	COG0028	Belongs to the TPP enzyme family
DJY80_18365	COG1022	Amp-dependent synthetase and ligase
DJY80_18385	COG1943	Transposase
DJY80_18395	COG0473	3-isopropylmalate dehydrogenase activity
DJY80_18410	COG2814	Major facilitator Superfamily
DJY80_18425	COG4143	(ABC) transporter
DJY80_18430	COG1178	ABC-type Fe3 transport system permease component
DJY80_18440	COG0586	Pfam SNARE associated Golgi protein
DJY80_18445	COG0417	DNA replication proofreading
DJY80_18465	COG2885	chlorophyll binding
DJY80_18465	COG3047	cAMP biosynthetic process
DJY80_18500	COG3501	Rhs element vgr protein
DJY80_18550	COG0564	pseudouridine synthase activity
DJY80_18555	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
DJY80_18565	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DJY80_18570	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
DJY80_18600	COG1943	Transposase
DJY80_18605	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
DJY80_18615	COG2966	Psort location CytoplasmicMembrane, score
DJY80_18620	COG1280	lysine exporter protein (LysE YggA)
DJY80_18625	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
DJY80_18630	COG0505	Belongs to the CarA family
DJY80_18640	COG1943	Transposase
DJY80_18650	COG1047	Peptidyl-prolyl cis-trans
DJY80_18665	COG0196	riboflavin kinase activity
DJY80_18685	COG0583	DNA-binding transcription factor activity
DJY80_18705	COG1584	GPR1 FUN34 yaaH family protein
DJY80_18720	COG0521	Mo-molybdopterin cofactor biosynthetic process
DJY80_18760	COG0745	RESPONSE REGULATOR receiver
DJY80_18765	COG3045	CreA protein
DJY80_18775	COG2207	Transcriptional regulator
DJY80_18775	COG3708	Transcriptional regulator
DJY80_18790	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
DJY80_18795	COG0741	lytic transglycosylase activity
DJY80_18810	COG2199	diguanylate cyclase activity
DJY80_18815	COG2885	chlorophyll binding
DJY80_18840	COG0560	Phosphoserine phosphatase
DJY80_18845	COG3726	membrane protein affecting hemolysin expression
DJY80_18865	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
DJY80_18870	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
DJY80_18875	COG0084	hydrolase, TatD family'
DJY80_18880	COG4667	esterase of the alpha-beta hydrolase superfamily
DJY80_18890	COG2823	Periplasmic or secreted lipoprotein
DJY80_18900	COG0456	acetyltransferase
DJY80_18905	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
DJY80_18925	COG3706	GGDEF domain
DJY80_18950	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJY80_18955	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJY80_18970	COG0859	PFAM glycosyl transferase family 9
DJY80_19025	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJY80_19025	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DJY80_19025	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJY80_19030	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DJY80_19035	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DJY80_19040	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DJY80_19045	COG2207	Transcriptional regulator
DJY80_19055	COG4269	membrane
DJY80_19115	COG1401	restriction endodeoxyribonuclease activity
DJY80_19135	COG1295	ribonuclease BN
DJY80_19140	COG1011	Hydrolase
DJY80_19150	COG0174	glutamine synthetase
DJY80_19155	COG3852	Histidine kinase
DJY80_19165	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DJY80_19190	COG1943	Transposase
DJY80_19195	COG1943	Transposase
DJY80_19200	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DJY80_19200	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DJY80_19205	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DJY80_19210	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
DJY80_19215	COG3084	Protein conserved in bacteria
DJY80_19225	COG1763	Mo-molybdopterin cofactor biosynthetic process
DJY80_19230	COG3328	transposase activity
DJY80_19300	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DJY80_19300	COG0678	peroxiredoxin activity
DJY80_19305	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DJY80_19330	COG1629	transport
DJY80_19345	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
DJY80_19400	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
DJY80_19405	COG0058	SHG alpha-glucan phosphorylase activity
DJY80_19430	COG3275	phosphorelay sensor kinase activity
DJY80_19460	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DJY80_19465	COG2095	MarC family integral membrane protein
DJY80_19485	COG3265	gluconokinase activity
DJY80_19490	COG2610	gluconate transmembrane transporter activity
DJY80_19495	COG1609	Transcriptional regulator
DJY80_19500	COG1741	Belongs to the pirin family
DJY80_19515	COG0745	RESPONSE REGULATOR receiver
DJY80_19525	COG0191	fructose-bisphosphate aldolase activity
DJY80_19535	COG1879	ABC-type sugar transport system periplasmic component
DJY80_19540	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJY80_19555	COG2081	HI0933 family
DJY80_19560	COG0306	phosphate transporter
DJY80_19565	COG1943	Transposase
DJY80_19575	COG0589	response to stress
DJY80_19595	COG0339	signal peptide processing
DJY80_19600	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
DJY80_19605	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DJY80_19610	COG3835	regulator
DJY80_19620	COG2610	gluconate transmembrane transporter activity
DJY80_19625	COG1929	Belongs to the glycerate kinase type-1 family
DJY80_19650	COG1295	ribonuclease BN
DJY80_19655	COG2134	cdp-diacylglycerol pyrophosphatase
DJY80_19660	COG2982	Protein involved in outer membrane biogenesis
DJY80_19665	COG2200	EAL domain
DJY80_19670	COG1942	4-Oxalocrotonate Tautomerase
DJY80_19675	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJY80_19680	COG0612	Peptidase, M16
DJY80_19700	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
DJY80_19705	COG2199	diguanylate cyclase activity
DJY80_19705	COG2200	EAL domain
DJY80_19710	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
DJY80_19715	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
DJY80_19720	COG4608	Belongs to the ABC transporter superfamily
DJY80_19725	COG0444	Belongs to the ABC transporter superfamily
DJY80_19730	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DJY80_19735	COG0601	transmembrane transport
DJY80_19740	COG0747	negative chemotaxis
DJY80_19750	COG2831	hemolysin activation secretion protein
DJY80_19765	COG2271	Major facilitator Superfamily
DJY80_19785	COG0456	acetyltransferase
DJY80_19790	COG2982	Protein involved in outer membrane biogenesis
DJY80_19795	COG2233	PERMEase
DJY80_19800	COG0786	glutamate:sodium symporter activity
DJY80_19810	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
DJY80_19815	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DJY80_19820	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DJY80_19835	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DJY80_19840	COG2860	membrane
DJY80_19845	COG1561	YicC-like family, N-terminal region
DJY80_19870	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DJY80_19890	COG0267	Belongs to the bacterial ribosomal protein bL33 family
DJY80_19910	COG1519	Transferase
DJY80_19915	COG0859	PFAM glycosyl transferase family 9
DJY80_19920	COG0859	PFAM glycosyl transferase family 9
DJY80_19930	COG0156	8-amino-7-oxononanoate synthase activity
DJY80_19945	COG4942	peptidase
DJY80_19955	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DJY80_19960	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DJY80_19980	COG1045	serine acetyltransferase
DJY80_19985	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
DJY80_19990	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DJY80_19990	COG2169	Transcriptional regulator
DJY80_19995	COG2205	protein histidine kinase activity
DJY80_20000	COG0745	RESPONSE REGULATOR receiver
DJY80_20005	COG3678	ATP-independent chaperone mediated protein folding
DJY80_20035	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
DJY80_20045	COG0471	metal ion transport
DJY80_20050	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
DJY80_20065	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
DJY80_20070	COG0583	DNA-binding transcription factor activity
DJY80_20085	COG3152	Membrane
DJY80_20095	COG1494	fructose-1,6-bisphosphatase
DJY80_20100	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DJY80_20105	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DJY80_20125	COG1943	Transposase
DJY80_20165	COG1575	Belongs to the MenA family. Type 1 subfamily
DJY80_20180	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DJY80_20195	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
DJY80_20205	COG4682	membrane
DJY80_20220	COG0460	homoserine dehydrogenase
DJY80_20220	COG0527	aspartate kinase activity
DJY80_20240	COG1349	DNA-binding transcription factor activity
DJY80_20260	COG0058	SHG alpha-glucan phosphorylase activity
DJY80_20265	COG0058	SHG alpha-glucan phosphorylase activity
DJY80_20270	COG1640	4-alpha-glucanotransferase
DJY80_20305	COG1918	ferrous iron import across plasma membrane
DJY80_20310	COG2183	response to ionizing radiation
DJY80_20315	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DJY80_20320	COG0745	RESPONSE REGULATOR receiver
DJY80_20340	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
DJY80_20345	COG1011	Hydrolase
DJY80_20355	COG0494	nUDIX hydrolase
DJY80_20360	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
DJY80_20390	COG4796	Type ii and iii secretion system protein
DJY80_20415	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DJY80_20420	COG0546	phosphoglycolate phosphatase activity
DJY80_20425	COG0180	Tryptophanyl-tRNA synthetase
DJY80_20440	COG2146	nitrite reductase [NAD(P)H] activity
DJY80_20445	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DJY80_20450	COG0402	S-adenosylhomocysteine deaminase activity
DJY80_20485	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
DJY80_20500	COG0551	DNA topoisomerase type I activity
DJY80_20510	COG0758	DNA mediated transformation
DJY80_20530	COG0569	domain protein
DJY80_20540	COG3036	rescue of stalled ribosome
DJY80_20545	COG0789	Transcriptional regulator
DJY80_20560	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
DJY80_20575	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DJY80_20580	COG0201	protein transport
DJY80_20590	COG1841	ribosomal large subunit assembly
DJY80_20630	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
DJY80_20635	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
DJY80_20645	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
DJY80_20650	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
DJY80_20660	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
DJY80_20685	COG0051	transcription antitermination factor activity, RNA binding
DJY80_20705	COG1943	Transposase
DJY80_20720	COG0049	tRNA binding
DJY80_20725	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
DJY80_20745	COG2964	Protein conserved in bacteria
DJY80_20750	COG0545	Peptidyl-prolyl cis-trans isomerase
DJY80_20765	COG1047	Peptidyl-prolyl cis-trans
DJY80_20770	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
DJY80_20780	COG2249	NAD(P)H dehydrogenase (quinone) activity
DJY80_20790	COG1216	Glycosyl transferase, family 2
DJY80_20800	COG2175	clavaminate synthase activity
DJY80_20805	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DJY80_20815	COG4521	taurine ABC transporter
DJY80_20825	COG0429	hydrolase of the alpha beta-hydrolase fold
DJY80_20835	COG3954	Phosphoribulokinase
DJY80_20845	COG1765	OsmC-like protein
DJY80_20855	COG1289	transmembrane transporter activity
DJY80_20870	COG0433	COG0433 Predicted ATPase
DJY80_20875	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DJY80_20900	COG2197	response regulator
DJY80_20905	COG2194	sulfuric ester hydrolase activity
DJY80_20920	COG2986	histidine ammonia-lyase
DJY80_20935	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DJY80_20950	COG4607	ABC-type enterochelin transport system periplasmic component
DJY80_20960	COG4605	iron ion homeostasis
DJY80_20965	COG4604	ABC transporter, ATP-binding protein
DJY80_21015	COG0582	viral genome integration into host DNA
DJY80_21025	COG1609	Transcriptional regulator
DJY80_21025	COG2207	Transcriptional regulator
DJY80_21030	COG4214	carbohydrate transport
DJY80_21040	COG4213	ABC transporter substrate-binding protein
DJY80_21050	COG1070	Carbohydrate kinase
DJY80_21060	COG3121	Chaperone
DJY80_21075	COG3274	enterobacterial common antigen metabolic process
DJY80_21160	COG1175	transmembrane transport
DJY80_21165	COG3833	ABC-type maltose transport systems, permease component
DJY80_21180	COG0527	aspartate kinase activity
DJY80_21210	COG2224	Isocitrate lyase
DJY80_21215	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
DJY80_21265	COG2186	Transcriptional regulator
DJY80_21270	COG0477	Major facilitator Superfamily
DJY80_21285	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJY80_21315	COG1522	sequence-specific DNA binding
DJY80_21320	COG0716	FMN binding
DJY80_21340	COG3312	ion transport
DJY80_21395	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DJY80_21400	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
DJY80_21405	COG0573	inorganic phosphate transmembrane transporter activity
DJY80_21410	COG0581	inorganic phosphate transmembrane transporter activity
DJY80_21420	COG0704	Plays a role in the regulation of phosphate uptake
DJY80_21430	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJY80_21435	COG0765	amino acid transport
DJY80_21440	COG0765	amino acid transport
DJY80_21445	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DJY80_21455	COG2252	PERMEase
DJY80_21485	COG0706	membrane insertase activity
DJY80_21500	COG0230	Belongs to the bacterial ribosomal protein bL34 family
DJY80_21520	COG1943	Transposase
DJY80_21570	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
DJY80_21580	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DJY80_21700	COG1475	DNA binding
DJY80_21800	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DJY80_21810	COG3344	reverse transcriptase
DJY80_21835	COG3328	transposase activity
DJY80_21875	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
DJY80_21885	COG5301	cellulose 1,4-beta-cellobiosidase activity
DJY80_21885	COG5301	cellulose 1,4-beta-cellobiosidase activity
DJY80_21920	COG3941	tape measure
DJY80_22015	COG1475	DNA binding
DJY80_22020	COG1475	DNA binding
DJY80_22025	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
DJY80_22075	COG1943	Transposase
DJY80_22115	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DJY80_22165	COG0515	serine threonine protein kinase
DJY80_22225	COG5599	Phosphatase
DJY80_22230	COG1317	bacterial-type flagellum organization
DJY80_22240	COG4669	(LipO)protein
DJY80_22290	COG2207	Transcriptional regulator
DJY80_22300	COG4792	protein secretion
DJY80_22305	COG4791	protein targeting
DJY80_22310	COG4794	Type iii secretion
DJY80_22315	COG4790	Type iii secretion
DJY80_22320	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
DJY80_22365	COG4789	Type iii secretion
DJY80_22385	COG0457	Tetratricopeptide repeat
DJY80_22415	COG4886	Leucine-rich repeat (LRR) protein
DJY80_22425	COG3328	transposase activity
DJY80_22450	COG3177	Filamentation induced by cAMP protein fic
DJY80_22485	COG1192	Involved in chromosome partitioning
DJY80_22490	COG1475	DNA binding
DJY80_22505	COG3609	addiction module antidote protein, CC2985 family
DJY80_22515	COG5599	Phosphatase
DJY80_22670	COG4683	PFAM Phage derived protein Gp49-like (DUF891)