locus-tag	class	description
vBYpM3_00002	PF13693	Winged helix-turn-helix DNA-binding
vBYpM3_00003	PF09299	Mu transposase, C-terminal
vBYpM3_00003	PF09039	Mu DNA binding, I gamma subdomain
vBYpM3_00003	PF02316	Mu DNA-binding domain
vBYpM3_00003	PF02914	Bacteriophage Mu transposase
vBYpM3_00004	PF09077	Mu B transposition protein, C terminal 
vBYpM3_00004	PF13401	AAA domain
vBYpM3_00010	PF07352	Bacteriophage Mu Gam like protein
vBYpM3_00017	PF08765	Mor transcription activator family
vBYpM3_00020	PF08765	Mor transcription activator family
vBYpM3_00021	PF00959	Phage lysozyme
vBYpM3_00025	PF08461	Ribonuclease R winged-helix domain
vBYpM3_00026	PF11985	Protein of unknown function (DUF3486)
vBYpM3_00027	PF03237	Terminase-like family
vBYpM3_00028	PF06074	Protein of unknown function (DUF935)
vBYpM3_00029	PF04233	Phage Mu protein F like protein
vBYpM3_00030	PF05069	Phage virion morphogenesis family 
vBYpM3_00031	PF10123	Mu-like prophage I protein
vBYpM3_00032	PF10124	Mu-like prophage major head subunit gpT
vBYpM3_00035	PF08873	Domain of unknown function (DUF1834)
vBYpM3_00037	PF04984	Phage tail sheath protein subtilisin-like domain
vBYpM3_00037	PF17482	Phage tail sheath C-terminal domain
vBYpM3_00038	PF10618	Phage tail tube protein
vBYpM3_00039	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14
vBYpM3_00041	PF07157	DNA circularisation protein N-terminus
vBYpM3_00044	PF07409	Phage protein GP46
vBYpM3_00045	PF04865	Baseplate J-like protein
vBYpM3_00051	PF02796	Helix-turn-helix domain of resolvase
vBYpM3_00051	PF00239	Resolvase, N terminal domain
vBYpM3_00052	PF10122	Mu-like prophage protein Com
vBYpM3_00055	PF02580	D-Tyr-tRNA(Tyr) deacylase
vBYpM3_00056	PF01695	IstB-like ATP binding protein
vBYpM3_00057	PF02796	Helix-turn-helix domain of resolvase
vBYpM3_00057	PF00665	Integrase core domain