locus-tag class description DJ40_10 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DJ40_100 PF00005 ABC transporter DJ40_1000 PF00005 ABC transporter DJ40_1001 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_1002 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DJ40_1003 PF00581 Rhodanese-like domain DJ40_1006 PF00005 ABC transporter DJ40_1007 PF00005 ABC transporter DJ40_1008 PF02653 Branched-chain amino acid transport system / permease component DJ40_1009 PF02653 Branched-chain amino acid transport system / permease component DJ40_101 PF02653 Branched-chain amino acid transport system / permease component DJ40_1010 PF13188 PAS domain DJ40_1010 PF00158 Sigma-54 interaction domain DJ40_1010 PF02954 Bacterial regulatory protein, Fis family DJ40_1011 PF07308 Protein of unknown function (DUF1456) DJ40_1012 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_1013 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_1015 PF00005 ABC transporter DJ40_1016 PF04226 Transglycosylase associated protein DJ40_1018 PF01844 HNH endonuclease DJ40_1019 PF01928 CYTH domain DJ40_102 PF13407 Periplasmic binding protein domain DJ40_1020 PF09330 D-lactate dehydrogenase, membrane binding DJ40_1020 PF01565 FAD binding domain DJ40_1021 PF00768 D-alanyl-D-alanine carboxypeptidase DJ40_1023 PF01207 Dihydrouridine synthase (Dus) DJ40_1027 PF00270 DEAD/DEAH box helicase DJ40_1027 PF00271 Helicase conserved C-terminal domain DJ40_1028 PF00440 Bacterial regulatory proteins, tetR family DJ40_1028 PF09209 Tetracyclin repressor-like, C-terminal domain DJ40_1029 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DJ40_1030 PF00005 ABC transporter DJ40_1034 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DJ40_1035 PF03466 LysR substrate binding domain DJ40_1035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_1036 PF00158 Sigma-54 interaction domain DJ40_1036 PF02954 Bacterial regulatory protein, Fis family DJ40_1036 PF00072 Response regulator receiver domain DJ40_1037 PF00512 His Kinase A (phospho-acceptor) domain DJ40_1037 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_1038 PF13801 Heavy-metal resistance DJ40_1039 PF03825 Nucleoside H+ symporter DJ40_104 PF00356 Bacterial regulatory proteins, lacI family DJ40_1040 PF01048 Phosphorylase superfamily DJ40_1042 PF03466 LysR substrate binding domain DJ40_1042 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_1043 PF02028 BCCT, betaine/carnitine/choline family transporter DJ40_1044 PF00440 Bacterial regulatory proteins, tetR family DJ40_1044 PF13977 BetI-type transcriptional repressor, C-terminal DJ40_1045 PF00171 Aldehyde dehydrogenase family DJ40_1046 PF05199 GMC oxidoreductase DJ40_1046 PF00732 GMC oxidoreductase DJ40_1047 PF01027 Inhibitor of apoptosis-promoting Bax1 DJ40_1048 PF02391 MoaE protein DJ40_1049 PF02597 ThiS family DJ40_105 PF03553 Na+/H+ antiporter family DJ40_1050 PF01967 MoaC family DJ40_1051 PF04055 Radical SAM superfamily DJ40_1051 PF06463 Molybdenum Cofactor Synthesis C DJ40_1053 PF01933 Uncharacterised protein family UPF0052 DJ40_1054 PF09905 DNA-binding protein VF530 DJ40_1055 PF02151 UvrB/uvrC motif DJ40_1055 PF04851 Type III restriction enzyme, res subunit DJ40_1055 PF12344 Ultra-violet resistance protein B DJ40_1055 PF17757 UvrB interaction domain DJ40_1055 PF00271 Helicase conserved C-terminal domain DJ40_1058 PF08241 Methyltransferase domain DJ40_1059 PF00155 Aminotransferase class I and II DJ40_106 PF00155 Aminotransferase class I and II DJ40_1060 PF04055 Radical SAM superfamily DJ40_1060 PF06968 Biotin and Thiamin Synthesis associated domain DJ40_1061 PF00202 Aminotransferase class-III DJ40_1062 PF10282 Lactonase, 7-bladed beta-propeller DJ40_1064 PF03459 TOBE domain DJ40_1064 PF00005 ABC transporter DJ40_1065 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_1067 PF10766 Multidrug efflux pump-associated protein AcrZ DJ40_1068 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_1068 PF03459 TOBE domain DJ40_1069 PF00005 ABC transporter DJ40_107 PF00892 EamA-like transporter family DJ40_1072 PF16363 GDP-mannose 4,6 dehydratase DJ40_1073 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DJ40_1073 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DJ40_1074 PF10509 Galactokinase galactose-binding signature DJ40_1074 PF08544 GHMP kinases C terminal DJ40_1074 PF00288 GHMP kinases N terminal domain DJ40_1075 PF01263 Aldose 1-epimerase DJ40_1077 PF00300 Histidine phosphatase superfamily (branch 1) DJ40_1078 PF00793 DAHP synthetase I family DJ40_1080 PF01545 Cation efflux family DJ40_1081 PF04973 Nicotinamide mononucleotide transporter DJ40_1082 PF02445 Quinolinate synthetase A protein DJ40_1086 PF16331 TolA binding protein trimerisation DJ40_1086 PF13174 Tetratricopeptide repeat DJ40_1087 PF00691 OmpA family DJ40_1088 PF07676 WD40-like Beta Propeller Repeat DJ40_1088 PF04052 TolB amino-terminal domain DJ40_1089 PF06519 TolA C-terminal DJ40_1089 PF06519 TolA C-terminal DJ40_1090 PF02472 Biopolymer transport protein ExbD/TolR DJ40_1091 PF01618 MotA/TolQ/ExbB proton channel family DJ40_1092 PF03061 Thioesterase superfamily DJ40_1093 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) DJ40_1094 PF08173 Membrane bound YbgT-like protein DJ40_1095 PF02322 Cytochrome bd terminal oxidase subunit II DJ40_1096 PF01654 Cytochrome bd terminal oxidase subunit I DJ40_1097 PF02629 CoA binding domain DJ40_1097 PF00549 CoA-ligase DJ40_1098 PF00549 CoA-ligase DJ40_1098 PF08442 ATP-grasp domain DJ40_1099 PF02817 e3 binding domain DJ40_1099 PF00364 Biotin-requiring enzyme DJ40_1099 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DJ40_11 PF14431 YwqJ-like deaminase DJ40_11 PF18807 Tripartite Tc toxins repeat DJ40_110 PF00171 Aldehyde dehydrogenase family DJ40_1100 PF00676 Dehydrogenase E1 component DJ40_1100 PF02779 Transketolase, pyrimidine binding domain DJ40_1100 PF16870 2-oxoglutarate dehydrogenase C-terminal DJ40_1100 PF16078 2-oxoglutarate dehydrogenase N-terminus DJ40_1101 PF13085 2Fe-2S iron-sulfur cluster binding domain DJ40_1102 PF00890 FAD binding domain DJ40_1102 PF02910 Fumarate reductase flavoprotein C-term DJ40_1103 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DJ40_1104 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DJ40_1105 PF00285 Citrate synthase, C-terminal domain DJ40_1106 PF01025 GrpE DJ40_1107 PF01513 ATP-NAD kinase DJ40_1108 PF02463 RecF/RecN/SMC N terminal domain DJ40_1109 PF04355 SmpA / OmlA family DJ40_111 PF01590 GAF domain DJ40_111 PF02954 Bacterial regulatory protein, Fis family DJ40_111 PF00158 Sigma-54 interaction domain DJ40_1110 PF03658 RnfH family Ubiquitin DJ40_1111 PF03364 Polyketide cyclase / dehydrase and lipid transport DJ40_1112 PF01668 SmpB protein DJ40_1113 PF00589 Phage integrase family DJ40_1113 PF13356 Arm DNA-binding domain DJ40_1118 PF04917 Bacterial shufflon protein, N-terminal constant region DJ40_112 PF00106 short chain dehydrogenase DJ40_1125 PF01443 Viral (Superfamily 1) RNA helicase DJ40_1125 PF03389 MobA/MobL family DJ40_1125 PF17841 BID domain of Bartonella effector protein (Bep) DJ40_1126 PF13175 AAA ATPase domain DJ40_113 PF06932 Protein of unknown function (DUF1283) DJ40_1135 PF13356 Arm DNA-binding domain DJ40_1135 PF00589 Phage integrase family DJ40_1136 PF01527 Transposase DJ40_1138 PF12697 Alpha/beta hydrolase family DJ40_114 PF06649 Protein of unknown function (DUF1161) DJ40_1140 PF01402 Ribbon-helix-helix protein, copG family DJ40_1141 PF00258 Flavodoxin DJ40_1142 PF01475 Ferric uptake regulator family DJ40_1143 PF02838 Glycosyl hydrolase family 20, domain 2 DJ40_1143 PF00728 Glycosyl hydrolase family 20, catalytic domain DJ40_1143 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain DJ40_1143 PF03173 Putative carbohydrate binding domain DJ40_1144 PF03573 outer membrane porin, OprD family DJ40_1145 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DJ40_1145 PF00749 tRNA synthetases class I (E and Q), catalytic domain DJ40_1146 PF01797 Transposase IS200 like DJ40_1147 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DJ40_1147 PF02378 Phosphotransferase system, EIIC DJ40_1147 PF00367 phosphotransferase system, EIIB DJ40_1148 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DJ40_1149 PF01979 Amidohydrolase family DJ40_115 PF00654 Voltage gated chloride channel DJ40_1150 PF00480 ROK family DJ40_1150 PF01047 MarR family DJ40_1151 PF13344 Haloacid dehalogenase-like hydrolase DJ40_1152 PF13537 Glutamine amidotransferase domain DJ40_1152 PF00733 Asparagine synthase DJ40_1159 PF01494 FAD binding domain DJ40_1160 PF01938 TRAM domain DJ40_1160 PF04055 Radical SAM superfamily DJ40_1160 PF00919 Uncharacterized protein family UPF0004 DJ40_1161 PF02562 PhoH-like protein DJ40_1162 PF02130 Uncharacterized protein family UPF0054 DJ40_1163 PF03471 Transporter associated domain DJ40_1163 PF00571 CBS domain DJ40_1164 PF00795 Carbon-nitrogen hydrolase DJ40_1165 PF00497 Bacterial extracellular solute-binding proteins, family 3 DJ40_1166 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_1167 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_1168 PF00005 ABC transporter DJ40_1169 PF07295 Zinc-ribbon containing domain DJ40_1170 PF00133 tRNA synthetases class I (I, L, M and V) DJ40_1170 PF08264 Anticodon-binding domain of tRNA DJ40_1170 PF13603 Leucyl-tRNA synthetase, Domain 2 DJ40_1171 PF04390 Lipopolysaccharide-assembly DJ40_1172 PF06144 DNA polymerase III, delta subunit DJ40_1172 PF14840 Processivity clamp loader gamma complex DNA pol III C-term DJ40_1173 PF01467 Cytidylyltransferase-like DJ40_1175 PF02590 Predicted SPOUT methyltransferase DJ40_1176 PF00905 Penicillin binding protein transpeptidase domain DJ40_1176 PF03717 Penicillin-binding Protein dimerisation domain DJ40_1177 PF01098 Cell cycle protein DJ40_1178 PF03330 Lytic transglycolase DJ40_1178 PF05036 Sporulation related domain DJ40_1179 PF07943 Penicillin-binding protein 5, C-terminal domain DJ40_1179 PF00768 D-alanyl-D-alanine carboxypeptidase DJ40_118 PF00480 ROK family DJ40_1180 PF04359 Protein of unknown function (DUF493) DJ40_1181 PF03099 Biotin/lipoate A/B protein ligase family DJ40_1182 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DJ40_1182 PF04055 Radical SAM superfamily DJ40_1183 PF02416 mttA/Hcf106 family DJ40_1184 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DJ40_1185 PF00313 'Cold-shock' DNA-binding domain DJ40_1186 PF00313 'Cold-shock' DNA-binding domain DJ40_1187 PF00196 Bacterial regulatory proteins, luxR family DJ40_119 PF07690 Major Facilitator Superfamily DJ40_1191 PF00005 ABC transporter DJ40_1191 PF00664 ABC transporter transmembrane region DJ40_1193 PF04962 KduI/IolB family DJ40_1194 PF01261 Xylose isomerase-like TIM barrel DJ40_1195 PF00294 pfkB family carbohydrate kinase DJ40_1196 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DJ40_1196 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DJ40_1197 PF02653 Branched-chain amino acid transport system / permease component DJ40_1198 PF00005 ABC transporter DJ40_1199 PF13407 Periplasmic binding protein domain DJ40_12 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DJ40_120 PF05472 DNA replication terminus site-binding protein (Ter protein) DJ40_1200 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DJ40_1200 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DJ40_1201 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DJ40_1201 PF00205 Thiamine pyrophosphate enzyme, central domain DJ40_1201 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DJ40_1202 PF00171 Aldehyde dehydrogenase family DJ40_1205 PF01835 MG2 domain DJ40_1205 PF17962 Bacterial macroglobulin domain 6 DJ40_1205 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain DJ40_1205 PF11974 Bacterial alpha-2-macroglobulin MG3 domain DJ40_1205 PF07703 Alpha-2-macroglobulin bait region domain DJ40_1205 PF00207 Alpha-2-macroglobulin family DJ40_1205 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain DJ40_1206 PF06832 Penicillin-Binding Protein C-terminus Family DJ40_1206 PF00912 Transglycosylase DJ40_1206 PF00905 Penicillin binding protein transpeptidase domain DJ40_1207 PF13693 Winged helix-turn-helix DNA-binding DJ40_121 PF10415 Fumarase C C-terminus DJ40_121 PF00206 Lyase DJ40_1211 PF05638 Type VI secretion system effector, Hcp DJ40_1214 PF03212 Pertactin DJ40_1214 PF13018 Extended Signal Peptide of Type V secretion system DJ40_1214 PF03797 Autotransporter beta-domain DJ40_1214 PF16168 Adhesin of bacterial autotransporter system, probable stalk DJ40_1216 PF08007 Cupin superfamily protein DJ40_1217 PF00849 RNA pseudouridylate synthase DJ40_1217 PF01479 S4 domain DJ40_122 PF01238 Phosphomannose isomerase type I DJ40_1222 PF00248 Aldo/keto reductase family DJ40_1223 PF00248 Aldo/keto reductase family DJ40_1224 PF03466 LysR substrate binding domain DJ40_1224 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_1227 PF00782 Dual specificity phosphatase, catalytic domain DJ40_1228 PF12147 Putative methyltransferase DJ40_1228 PF12146 Serine aminopeptidase, S33 DJ40_1229 PF01553 Acyltransferase DJ40_123 PF06097 Bacterial protein of unknown function (DUF945) DJ40_1231 PF01066 CDP-alcohol phosphatidyltransferase DJ40_1237 PF06755 CbtA_toxin of type IV toxin-antitoxin system DJ40_1238 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A DJ40_1239 PF06174 Protein of unknown function (DUF987) DJ40_1240 PF04002 RadC-like JAB domain DJ40_1241 PF03230 Antirestriction protein DJ40_1242 PF06006 Bacterial protein of unknown function (DUF905) DJ40_1243 PF06067 Domain of unknown function (DUF932) DJ40_1247 PF01926 50S ribosome-binding GTPase DJ40_125 PF13593 SBF-like CPA transporter family (DUF4137) DJ40_1251 PF13676 TIR domain DJ40_1256 PF10544 T5orf172 domain DJ40_1259 PF00589 Phage integrase family DJ40_1259 PF14659 Phage integrase, N-terminal SAM-like domain DJ40_1259 PF13356 Arm DNA-binding domain DJ40_126 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DJ40_126 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DJ40_1261 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DJ40_1261 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DJ40_1263 PF01406 tRNA synthetases class I (C) catalytic domain DJ40_1263 PF09190 DALR domain DJ40_1264 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DJ40_1265 PF00149 Calcineurin-like phosphoesterase DJ40_1266 PF00731 AIR carboxylase DJ40_1267 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DJ40_1267 PF02222 ATP-grasp domain DJ40_1269 PF00005 ABC transporter DJ40_127 PF12833 Helix-turn-helix domain DJ40_127 PF02311 AraC-like ligand binding domain DJ40_1270 PF13472 GDSL-like Lipase/Acylhydrolase family DJ40_1271 PF00106 short chain dehydrogenase DJ40_1272 PF00085 Thioredoxin DJ40_1273 PF01145 SPFH domain / Band 7 family DJ40_1273 PF16200 C-terminal region of band_7 DJ40_1274 PF01957 NfeD-like C-terminal, partner-binding DJ40_1275 PF13411 MerR HTH family regulatory protein DJ40_1276 PF00403 Heavy-metal-associated domain DJ40_1277 PF01963 TraB family DJ40_1278 PF04073 Aminoacyl-tRNA editing domain DJ40_128 PF02653 Branched-chain amino acid transport system / permease component DJ40_1281 PF02413 Caudovirales tail fibre assembly protein, lambda gpK DJ40_1283 PF08400 Prophage tail fibre N-terminal DJ40_1283 PF03335 Phage tail fibre repeat DJ40_1283 PF07484 Phage Tail Collar Domain DJ40_129 PF00005 ABC transporter DJ40_1294 PF04984 Phage tail sheath protein subtilisin-like domain DJ40_1294 PF17482 Phage tail sheath C-terminal domain DJ40_13 PF00440 Bacterial regulatory proteins, tetR family DJ40_13 PF16925 Tetracyclin repressor-like, C-terminal domain DJ40_130 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DJ40_131 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DJ40_1316 PF13132 Domain of unknown function (DUF3950) DJ40_132 PF02610 L-arabinose isomerase DJ40_132 PF11762 L-arabinose isomerase C-terminal domain DJ40_1322 PF00589 Phage integrase family DJ40_1322 PF13356 Arm DNA-binding domain DJ40_133 PF00005 ABC transporter DJ40_133 PF00664 ABC transporter transmembrane region DJ40_133 PF03412 Peptidase C39 family DJ40_1330 PF00182 Chitinase class I DJ40_1333 PF01555 DNA methylase DJ40_1333 PF18755 Restriction Enzyme Adenine Methylase Associated DJ40_1335 PF06147 Protein of unknown function (DUF968) DJ40_1337 PF00589 Phage integrase family DJ40_1337 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain DJ40_1338 PF02872 5'-nucleotidase, C-terminal domain DJ40_1338 PF00149 Calcineurin-like phosphoesterase DJ40_1339 PF00149 Calcineurin-like phosphoesterase DJ40_1339 PF02872 5'-nucleotidase, C-terminal domain DJ40_134 PF13533 Biotin-lipoyl like DJ40_1340 PF07690 Major Facilitator Superfamily DJ40_1341 PF02254 TrkA-N domain DJ40_1341 PF00999 Sodium/hydrogen exchanger family DJ40_1342 PF00294 pfkB family carbohydrate kinase DJ40_1343 PF02706 Chain length determinant protein DJ40_1346 PF00483 Nucleotidyl transferase DJ40_1347 PF13580 SIS domain DJ40_1348 PF00288 GHMP kinases N terminal domain DJ40_1348 PF08544 GHMP kinases C terminal DJ40_1349 PF16363 GDP-mannose 4,6 dehydratase DJ40_135 PF00664 ABC transporter transmembrane region DJ40_135 PF03412 Peptidase C39 family DJ40_135 PF00005 ABC transporter DJ40_1350 PF00551 Formyl transferase DJ40_1350 PF01370 NAD dependent epimerase/dehydratase family DJ40_1350 PF02911 Formyl transferase, C-terminal domain DJ40_1354 PF00535 Glycosyl transferase family 2 DJ40_1356 PF16363 GDP-mannose 4,6 dehydratase DJ40_1357 PF01370 NAD dependent epimerase/dehydratase family DJ40_1358 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DJ40_1359 PF16363 GDP-mannose 4,6 dehydratase DJ40_136 PF10754 Protein of unknown function (DUF2569) DJ40_1360 PF00483 Nucleotidyl transferase DJ40_1361 PF00111 2Fe-2S iron-sulfur cluster binding domain DJ40_1361 PF00175 Oxidoreductase NAD-binding domain DJ40_1361 PF00970 Oxidoreductase FAD-binding domain DJ40_1362 PF00762 Ferrochelatase DJ40_1363 PF05191 Adenylate kinase, active site lid DJ40_1364 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_1364 PF00183 Hsp90 protein DJ40_1365 PF13662 Toprim domain DJ40_1365 PF02132 RecR protein DJ40_1366 PF02575 YbaB/EbfC DNA-binding family DJ40_1367 PF12170 DNA polymerase III tau subunit V interacting with alpha DJ40_1367 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DJ40_1367 PF12169 DNA polymerase III subunits gamma and tau domain III DJ40_1368 PF00156 Phosphoribosyl transferase domain DJ40_1369 PF04304 Protein of unknown function (DUF454) DJ40_137 PF02508 Rnf-Nqr subunit, membrane protein DJ40_1371 PF12794 Mechanosensitive ion channel inner membrane domain 1 DJ40_1371 PF12795 Mechanosensitive ion channel porin domain DJ40_1371 PF00924 Mechanosensitive ion channel DJ40_1372 PF02635 DsrE/DsrF-like family DJ40_1373 PF00440 Bacterial regulatory proteins, tetR family DJ40_1373 PF08361 MAATS-type transcriptional repressor, C-terminal region DJ40_1374 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DJ40_1374 PF00529 HlyD membrane-fusion protein of T1SS DJ40_1375 PF00873 AcrB/AcrD/AcrF family DJ40_1376 PF01197 Ribosomal protein L31 DJ40_1377 PF00444 Ribosomal protein L36 DJ40_1379 PF10757 Biofilm formation regulator YbaJ DJ40_138 PF04060 Putative Fe-S cluster DJ40_1380 PF05321 Haemolysin expression modulating protein DJ40_1381 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DJ40_1382 PF09619 Type III secretion system lipoprotein chaperone (YscW) DJ40_1384 PF00909 Ammonium Transporter Family DJ40_1385 PF00543 Nitrogen regulatory protein P-II DJ40_1386 PF00664 ABC transporter transmembrane region DJ40_1386 PF00005 ABC transporter DJ40_1387 PF00664 ABC transporter transmembrane region DJ40_1387 PF00005 ABC transporter DJ40_1388 PF01037 Lrp/AsnC ligand binding domain DJ40_1388 PF13404 AsnC-type helix-turn-helix domain DJ40_1389 PF00291 Pyridoxal-phosphate dependent enzyme DJ40_139 PF10531 SLBB domain DJ40_139 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DJ40_139 PF13375 RnfC Barrel sandwich hybrid domain DJ40_139 PF13237 4Fe-4S dicluster domain DJ40_1391 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DJ40_1391 PF12793 Sugar transport-related sRNA regulator N-term DJ40_1392 PF06508 Queuosine biosynthesis protein QueC DJ40_1395 PF13145 PPIC-type PPIASE domain DJ40_1396 PF00216 Bacterial DNA-binding protein DJ40_1397 PF00004 ATPase family associated with various cellular activities (AAA) DJ40_1397 PF05362 Lon protease (S16) C-terminal proteolytic domain DJ40_1397 PF02190 ATP-dependent protease La (LON) substrate-binding domain DJ40_1398 PF06689 ClpX C4-type zinc finger DJ40_1398 PF10431 C-terminal, D2-small domain, of ClpB protein DJ40_1398 PF07724 AAA domain (Cdc48 subfamily) DJ40_1399 PF00574 Clp protease DJ40_14 PF00884 Sulfatase DJ40_14 PF08019 Phosphoethanolamine transferase EptA/EptB DJ40_140 PF12833 Helix-turn-helix domain DJ40_140 PF06445 GyrI-like small molecule binding domain DJ40_1400 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DJ40_1400 PF05697 Bacterial trigger factor protein (TF) DJ40_1400 PF05698 Bacterial trigger factor protein (TF) C-terminus DJ40_1402 PF01722 BolA-like protein DJ40_1403 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DJ40_1403 PF03923 Uncharacterized lipoprotein DJ40_1404 PF07690 Major Facilitator Superfamily DJ40_1405 PF03502 Nucleoside-specific channel-forming protein, Tsx DJ40_1406 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DJ40_1406 PF06481 COX Aromatic Rich Motif DJ40_1407 PF00115 Cytochrome C and Quinol oxidase polypeptide I DJ40_1408 PF00510 Cytochrome c oxidase subunit III DJ40_1409 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DJ40_141 PF03116 NQR2, RnfD, RnfE family DJ40_1410 PF01040 UbiA prenyltransferase family DJ40_1411 PF07690 Major Facilitator Superfamily DJ40_1412 PF04461 Protein of unknown function (DUF520) DJ40_1413 PF02558 Ketopantoate reductase PanE/ApbA DJ40_1413 PF08546 Ketopantoate reductase PanE/ApbA C terminal DJ40_1414 PF01965 DJ-1/PfpI family DJ40_1415 PF02926 THUMP domain DJ40_1415 PF02568 Thiamine biosynthesis protein (ThiI) DJ40_1416 PF02609 Exonuclease VII small subunit DJ40_1417 PF00348 Polyprenyl synthetase DJ40_1418 PF02779 Transketolase, pyrimidine binding domain DJ40_1418 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DJ40_1418 PF02780 Transketolase, C-terminal domain DJ40_1419 PF04608 Phosphatidylglycerophosphatase A DJ40_142 PF04205 FMN-binding domain DJ40_1420 PF00586 AIR synthase related protein, N-terminal domain DJ40_1420 PF02769 AIR synthase related protein, C-terminal domain DJ40_1421 PF01029 NusB family DJ40_1422 PF00885 6,7-dimethyl-8-ribityllumazine synthase DJ40_1423 PF01872 RibD C-terminal domain DJ40_1423 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DJ40_1424 PF03477 ATP cone domain DJ40_1426 PF01797 Transposase IS200 like DJ40_1427 PF07549 SecD/SecF GG Motif DJ40_1427 PF02355 Protein export membrane protein DJ40_1428 PF02355 Protein export membrane protein DJ40_1428 PF07549 SecD/SecF GG Motif DJ40_1428 PF13721 SecD export protein N-terminal TM region DJ40_1429 PF02699 Preprotein translocase subunit DJ40_143 PF02508 Rnf-Nqr subunit, membrane protein DJ40_1430 PF01702 Queuine tRNA-ribosyltransferase DJ40_1431 PF02547 Queuosine biosynthesis protein DJ40_1432 PF04336 Acyl carrier protein phosphodiesterase DJ40_1433 PF00578 AhpC/TSA family DJ40_1433 PF10417 C-terminal domain of 1-Cys peroxiredoxin DJ40_1436 PF00128 Alpha amylase, catalytic domain DJ40_1436 PF02903 Alpha amylase, N-terminal ig-like domain DJ40_1437 PF00324 Amino acid permease DJ40_1438 PF05525 Branched-chain amino acid transport protein DJ40_1439 PF12849 PBP superfamily domain DJ40_144 PF10576 Iron-sulfur binding domain of endonuclease III DJ40_144 PF00633 Helix-hairpin-helix motif DJ40_144 PF00730 HhH-GPD superfamily base excision DNA repair protein DJ40_1440 PF00512 His Kinase A (phospho-acceptor) domain DJ40_1440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_1440 PF11808 Phosphate regulon sensor protein PhoR DJ40_1440 PF00989 PAS fold DJ40_1441 PF00072 Response regulator receiver domain DJ40_1441 PF00486 Transcriptional regulatory protein, C terminal DJ40_1442 PF00149 Calcineurin-like phosphoesterase DJ40_1442 PF12320 Type 5 capsule protein repressor C-terminal domain DJ40_1443 PF13476 AAA domain DJ40_1444 PF00480 ROK family DJ40_1445 PF04381 Putative exonuclease, RdgC DJ40_1446 PF06865 Pyrimidine/purine nucleoside phosphorylase DJ40_1447 PF01202 Shikimate kinase DJ40_1449 PF08241 Methyltransferase domain DJ40_145 PF01370 NAD dependent epimerase/dehydratase family DJ40_1451 PF07317 Flagellar regulator YcgR DJ40_1451 PF07238 PilZ domain DJ40_1452 PF00171 Aldehyde dehydrogenase family DJ40_1453 PF00696 Amino acid kinase family DJ40_1453 PF01472 PUA domain DJ40_1454 PF07417 Sigma factor-binding transcriptional regulator Crl DJ40_1456 PF00156 Phosphoribosyl transferase domain DJ40_1459 PF01797 Transposase IS200 like DJ40_146 PF07690 Major Facilitator Superfamily DJ40_1461 PF01546 Peptidase family M20/M25/M40 DJ40_1461 PF07687 Peptidase dimerisation domain DJ40_1462 PF11799 impB/mucB/samB family C-terminal domain DJ40_1462 PF11798 IMS family HHH motif DJ40_1462 PF00817 impB/mucB/samB family DJ40_1463 PF03009 Glycerophosphoryl diester phosphodiesterase family DJ40_1465 PF02424 ApbE family DJ40_1466 PF00970 Oxidoreductase FAD-binding domain DJ40_1466 PF00175 Oxidoreductase NAD-binding domain DJ40_1466 PF00111 2Fe-2S iron-sulfur cluster binding domain DJ40_1467 PF02508 Rnf-Nqr subunit, membrane protein DJ40_1468 PF02508 Rnf-Nqr subunit, membrane protein DJ40_1469 PF04205 FMN-binding domain DJ40_147 PF08206 Ribonuclease B OB domain DJ40_147 PF00575 S1 RNA binding domain DJ40_147 PF00773 RNB domain DJ40_147 PF17876 Cold shock domain DJ40_1470 PF03116 NQR2, RnfD, RnfE family DJ40_1471 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DJ40_1471 PF11973 NQRA C-terminal domain DJ40_1472 PF13230 Glutamine amidotransferases class-II DJ40_1473 PF03734 L,D-transpeptidase catalytic domain DJ40_1474 PF13580 SIS domain DJ40_1475 PF09317 Domain of unknown function (DUF1974) DJ40_1475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DJ40_1475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DJ40_1477 PF18254 HMW1 domain 2 DJ40_1477 PF18071 HMW1C N-terminal DJ40_1478 PF05860 haemagglutination activity domain DJ40_1479 PF08479 POTRA domain, ShlB-type DJ40_1479 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DJ40_148 PF13722 5TM C-terminal transporter carbon starvation CstA DJ40_148 PF02554 Carbon starvation protein CstA DJ40_1480 PF01636 Phosphotransferase enzyme family DJ40_1481 PF01008 Initiation factor 2 subunit family DJ40_1482 PF03079 ARD/ARD' family DJ40_1484 PF00596 Class II Aldolase and Adducin N-terminal domain DJ40_149 PF04328 Selenoprotein, putative DJ40_1491 PF00589 Phage integrase family DJ40_1491 PF12167 Arm DNA-binding domain DJ40_1492 PF00155 Aminotransferase class I and II DJ40_1493 PF00795 Carbon-nitrogen hydrolase DJ40_1494 PF07687 Peptidase dimerisation domain DJ40_1494 PF01546 Peptidase family M20/M25/M40 DJ40_1495 PF00266 Aminotransferase class-V DJ40_1496 PF00005 ABC transporter DJ40_1498 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_1499 PF00497 Bacterial extracellular solute-binding proteins, family 3 DJ40_15 PF06945 Protein of unknown function (DUF1289) DJ40_150 PF00923 Transaldolase/Fructose-6-phosphate aldolase DJ40_1502 PF01425 Amidase DJ40_1504 PF07690 Major Facilitator Superfamily DJ40_1505 PF03591 AzlC protein DJ40_1506 PF05437 Branched-chain amino acid transport protein (AzlD) DJ40_1507 PF01047 MarR family DJ40_1508 PF00529 HlyD membrane-fusion protein of T1SS DJ40_1508 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DJ40_1509 PF07690 Major Facilitator Superfamily DJ40_1510 PF08032 RNA 2'-O ribose methyltransferase substrate binding DJ40_1510 PF00588 SpoU rRNA Methylase family DJ40_1511 PF00085 Thioredoxin DJ40_1513 PF13380 CoA binding domain DJ40_1513 PF00583 Acetyltransferase (GNAT) family DJ40_1513 PF13607 Succinyl-CoA ligase like flavodoxin domain DJ40_1514 PF13091 PLD-like domain DJ40_1515 PF10043 Predicted periplasmic lipoprotein (DUF2279) DJ40_152 PF00596 Class II Aldolase and Adducin N-terminal domain DJ40_1520 PF02861 Clp amino terminal domain, pathogenicity island component DJ40_1520 PF00004 ATPase family associated with various cellular activities (AAA) DJ40_1520 PF17871 AAA lid domain DJ40_1520 PF07724 AAA domain (Cdc48 subfamily) DJ40_1520 PF10431 C-terminal, D2-small domain, of ClpB protein DJ40_1522 PF01479 S4 domain DJ40_1522 PF00849 RNA pseudouridylate synthase DJ40_1523 PF13525 Outer membrane lipoprotein DJ40_1524 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DJ40_1525 PF01817 Chorismate mutase type II DJ40_1525 PF00800 Prephenate dehydratase DJ40_1526 PF01817 Chorismate mutase type II DJ40_1526 PF02153 Prephenate dehydrogenase DJ40_1527 PF00793 DAHP synthetase I family DJ40_1528 PF00072 Response regulator receiver domain DJ40_1528 PF04397 LytTr DNA-binding domain DJ40_1529 PF03605 Anaerobic c4-dicarboxylate membrane transporter DJ40_153 PF05433 Glycine zipper 2TM domain DJ40_1530 PF04338 Protein of unknown function, DUF481 DJ40_1531 PF01245 Ribosomal protein L19 DJ40_1532 PF01746 tRNA (Guanine-1)-methyltransferase DJ40_1533 PF05239 PRC-barrel domain DJ40_1533 PF01782 RimM N-terminal domain DJ40_1534 PF00886 Ribosomal protein S16 DJ40_1535 PF00448 SRP54-type protein, GTPase domain DJ40_1535 PF02881 SRP54-type protein, helical bundle domain DJ40_1535 PF02978 Signal peptide binding domain DJ40_1536 PF01578 Cytochrome C assembly protein DJ40_1537 PF01595 Cyclin M transmembrane N-terminal domain DJ40_1537 PF00571 CBS domain DJ40_1537 PF03471 Transporter associated domain DJ40_1538 PF02664 S-Ribosylhomocysteinase (LuxS) DJ40_1539 PF04262 Glutamate-cysteine ligase DJ40_154 PF01253 Translation initiation factor SUI1 DJ40_1540 PF09335 SNARE associated Golgi protein DJ40_1541 PF13419 Haloacid dehalogenase-like hydrolase DJ40_1547 PF02599 Global regulator protein family DJ40_1548 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DJ40_1548 PF02272 DHHA1 domain DJ40_1548 PF01411 tRNA synthetases class II (A) DJ40_1549 PF02631 RecX family DJ40_155 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DJ40_1550 PF00154 recA bacterial DNA recombination protein DJ40_1551 PF02464 Competence-damaged protein DJ40_1552 PF07690 Major Facilitator Superfamily DJ40_1555 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DJ40_1555 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DJ40_1556 PF02779 Transketolase, pyrimidine binding domain DJ40_1556 PF02780 Transketolase, C-terminal domain DJ40_1557 PF00456 Transketolase, thiamine diphosphate binding domain DJ40_1558 PF02653 Branched-chain amino acid transport system / permease component DJ40_1559 PF00005 ABC transporter DJ40_1562 PF00141 Peroxidase DJ40_1563 PF07361 Cytochrome b562 DJ40_1564 PF01292 Prokaryotic cytochrome b561 DJ40_1565 PF02613 Nitrate reductase delta subunit DJ40_1566 PF04976 DMSO reductase anchor subunit (DmsC) DJ40_1567 PF12800 4Fe-4S binding domain DJ40_1567 PF13247 4Fe-4S dicluster domain DJ40_1568 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DJ40_1568 PF00384 Molybdopterin oxidoreductase DJ40_1568 PF01568 Molydopterin dinucleotide binding domain DJ40_1569 PF00596 Class II Aldolase and Adducin N-terminal domain DJ40_157 PF18073 Rubredoxin metal binding domain DJ40_1570 PF00455 DeoR C terminal sensor domain DJ40_1570 PF08220 DeoR-like helix-turn-helix domain DJ40_1572 PF00005 ABC transporter DJ40_1573 PF02653 Branched-chain amino acid transport system / permease component DJ40_1574 PF02653 Branched-chain amino acid transport system / permease component DJ40_1575 PF01261 Xylose isomerase-like TIM barrel DJ40_1576 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DJ40_1576 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DJ40_1577 PF05681 Fumarate hydratase (Fumerase) DJ40_1577 PF05683 Fumarase C-terminus DJ40_1579 PF00557 Metallopeptidase family M24 DJ40_158 PF06305 Lipopolysaccharide assembly protein A domain DJ40_1581 PF00593 TonB dependent receptor DJ40_1581 PF07715 TonB-dependent Receptor Plug Domain DJ40_1583 PF03150 Di-haem cytochrome c peroxidase DJ40_1583 PF00034 Cytochrome c DJ40_1583 PF14376 Haem-binding domain DJ40_1584 PF00497 Bacterial extracellular solute-binding proteins, family 3 DJ40_1587 PF01022 Bacterial regulatory protein, arsR family DJ40_1588 PF02040 Arsenical pump membrane protein DJ40_1589 PF04198 Putative sugar-binding domain DJ40_1589 PF13936 Helix-turn-helix domain DJ40_159 PF01569 PAP2 superfamily DJ40_1590 PF02734 DAK2 domain DJ40_1591 PF02733 Dak1 domain DJ40_1593 PF08240 Alcohol dehydrogenase GroES-like domain DJ40_1593 PF00107 Zinc-binding dehydrogenase DJ40_1594 PF02502 Ribose/Galactose Isomerase DJ40_1595 PF05190 MutS family domain IV DJ40_1595 PF05192 MutS domain III DJ40_1595 PF01624 MutS domain I DJ40_1595 PF05188 MutS domain II DJ40_1595 PF00488 MutS domain V DJ40_1596 PF04542 Sigma-70 region 2 DJ40_1596 PF04539 Sigma-70 region 3 DJ40_1596 PF04545 Sigma-70, region 4 DJ40_1596 PF00140 Sigma-70 factor, region 1.2 DJ40_1597 PF01476 LysM domain DJ40_1597 PF01551 Peptidase family M23 DJ40_1599 PF01975 Survival protein SurE DJ40_16 PF00248 Aldo/keto reductase family DJ40_160 PF00925 GTP cyclohydrolase II DJ40_1600 PF01142 tRNA pseudouridine synthase D (TruD) DJ40_1601 PF02542 YgbB family DJ40_1602 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DJ40_1603 PF04977 Septum formation initiator DJ40_1604 PF12084 Protein of unknown function (DUF3561) DJ40_1606 PF00009 Elongation factor Tu GTP binding domain DJ40_1607 PF01507 Phosphoadenosine phosphosulfate reductase family DJ40_1608 PF10414 Sirohaem synthase dimerisation region DJ40_1608 PF14824 Sirohaem biosynthesis protein central DJ40_1608 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DJ40_161 PF00330 Aconitase family (aconitate hydratase) DJ40_161 PF00694 Aconitase C-terminal domain DJ40_1611 PF01797 Transposase IS200 like DJ40_1612 PF01507 Phosphoadenosine phosphosulfate reductase family DJ40_1613 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DJ40_1613 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DJ40_1614 PF00175 Oxidoreductase NAD-binding domain DJ40_1614 PF00258 Flavodoxin DJ40_1614 PF00667 FAD binding domain DJ40_1615 PF01242 6-pyruvoyl tetrahydropterin synthase DJ40_1616 PF04055 Radical SAM superfamily DJ40_1617 PF00080 Copper/zinc superoxide dismutase (SODC) DJ40_1618 PF03952 Enolase, N-terminal domain DJ40_1618 PF00113 Enolase, C-terminal TIM barrel domain DJ40_1619 PF06418 CTP synthase N-terminus DJ40_1619 PF00117 Glutamine amidotransferase class-I DJ40_1620 PF03819 MazG nucleotide pyrophosphohydrolase domain DJ40_1621 PF04607 Region found in RelA / SpoT proteins DJ40_1621 PF02824 TGS domain DJ40_1621 PF13291 ACT domain DJ40_1622 PF00672 HAMP domain DJ40_1622 PF00512 His Kinase A (phospho-acceptor) domain DJ40_1622 PF01627 Hpt domain DJ40_1622 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_1622 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DJ40_1622 PF00072 Response regulator receiver domain DJ40_1623 PF00595 PDZ domain DJ40_1624 PF13286 Phosphohydrolase-associated domain DJ40_1624 PF01966 HD domain DJ40_1625 PF01048 Phosphorylase superfamily DJ40_1626 PF01497 Periplasmic binding protein DJ40_1627 PF03458 UPF0126 domain DJ40_1628 PF01521 Iron-sulphur cluster biosynthesis DJ40_1629 PF00654 Voltage gated chloride channel DJ40_163 PF03466 LysR substrate binding domain DJ40_163 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_1630 PF00202 Aminotransferase class-III DJ40_1631 PF01032 FecCD transport family DJ40_1632 PF01497 Periplasmic binding protein DJ40_1633 PF00005 ABC transporter DJ40_1634 PF00912 Transglycosylase DJ40_1634 PF14814 Bifunctional transglycosylase second domain DJ40_1634 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal DJ40_1634 PF00905 Penicillin binding protein transpeptidase domain DJ40_1635 PF04408 Helicase associated domain (HA2) DJ40_1635 PF00271 Helicase conserved C-terminal domain DJ40_1635 PF00270 DEAD/DEAH box helicase DJ40_1635 PF08482 ATP-dependent helicase C-terminal DJ40_1636 PF02834 LigT like Phosphoesterase DJ40_1637 PF17746 SfsA N-terminal OB domain DJ40_1637 PF03749 Sugar fermentation stimulation protein RE domain DJ40_1638 PF01258 Prokaryotic dksA/traR C4-type zinc finger DJ40_1639 PF00749 tRNA synthetases class I (E and Q), catalytic domain DJ40_164 PF01396 Topoisomerase DNA binding C4 zinc finger DJ40_164 PF01751 Toprim domain DJ40_164 PF08272 Topoisomerase I zinc-ribbon-like DJ40_164 PF01131 DNA topoisomerase DJ40_1640 PF12626 Polymerase A arginine-rich C-terminus DJ40_1640 PF12627 Probable RNA and SrmB- binding site of polymerase A DJ40_1640 PF01743 Poly A polymerase head domain DJ40_1641 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DJ40_1642 PF02548 Ketopantoate hydroxymethyltransferase DJ40_1643 PF02569 Pantoate-beta-alanine ligase DJ40_1644 PF02261 Aspartate decarboxylase DJ40_1645 PF01522 Polysaccharide deacetylase DJ40_1646 PF01061 ABC-2 type transporter DJ40_1647 PF00005 ABC transporter DJ40_1648 PF00484 Carbonic anhydrase DJ40_1649 PF00156 Phosphoribosyl transferase domain DJ40_1650 PF07731 Multicopper oxidase DJ40_1650 PF00394 Multicopper oxidase DJ40_1650 PF07732 Multicopper oxidase DJ40_1650 PF10518 TAT (twin-arginine translocation) pathway signal sequence DJ40_1651 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) DJ40_1652 PF17284 Spermidine synthase tetramerisation domain DJ40_1653 PF02675 S-adenosylmethionine decarboxylase DJ40_1654 PF00892 EamA-like transporter family DJ40_1655 PF06062 Uncharacterised protein family (UPF0231) DJ40_1656 PF11791 Aconitate B N-terminal domain DJ40_1656 PF06434 Aconitate hydratase 2 N-terminus DJ40_1656 PF00330 Aconitase family (aconitate hydratase) DJ40_1657 PF07992 Pyridine nucleotide-disulphide oxidoreductase DJ40_1657 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DJ40_1658 PF02817 e3 binding domain DJ40_1658 PF00364 Biotin-requiring enzyme DJ40_1658 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DJ40_1659 PF00456 Transketolase, thiamine diphosphate binding domain DJ40_1659 PF17831 Pyruvate dehydrogenase E1 component middle domain DJ40_166 PF10692 Protein of unknown function (DUF2498) DJ40_1660 PF00392 Bacterial regulatory proteins, gntR family DJ40_1660 PF07729 FCD domain DJ40_1661 PF00324 Amino acid permease DJ40_1662 PF17113 Regulatory signalling modulator protein AmpE DJ40_1663 PF01510 N-acetylmuramoyl-L-alanine amidase DJ40_1664 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DJ40_1664 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DJ40_1665 PF07963 Prokaryotic N-terminal methylation motif DJ40_1666 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DJ40_1666 PF00437 Type II/IV secretion system protein DJ40_1667 PF00482 Type II secretion system (T2SS), protein F DJ40_1668 PF00478 IMP dehydrogenase / GMP reductase domain DJ40_1669 PF01121 Dephospho-CoA kinase DJ40_167 PF01343 Peptidase family S49 DJ40_167 PF08496 Peptidase family S49 N-terminal DJ40_1670 PF07072 Cell division protein DJ40_1671 PF03884 DNA gyrase inhibitor YacG DJ40_1672 PF00293 NUDIX domain DJ40_1673 PF02810 SEC-C motif DJ40_1673 PF01043 SecA preprotein cross-linking domain DJ40_1673 PF07516 SecA Wing and Scaffold domain DJ40_1673 PF07517 SecA DEAD-like domain DJ40_1674 PF06558 Secretion monitor precursor protein (SecM) DJ40_1676 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DJ40_1677 PF12327 FtsZ family, C-terminal domain DJ40_1677 PF00091 Tubulin/FtsZ family, GTPase domain DJ40_1678 PF02491 SHS2 domain inserted in FTSA DJ40_1679 PF08478 POTRA domain, FtsQ-type DJ40_1679 PF03799 Cell division protein FtsQ DJ40_168 PF00106 short chain dehydrogenase DJ40_1680 PF07478 D-ala D-ala ligase C-terminus DJ40_1680 PF01820 D-ala D-ala ligase N-terminus DJ40_1681 PF01225 Mur ligase family, catalytic domain DJ40_1681 PF08245 Mur ligase middle domain DJ40_1681 PF02875 Mur ligase family, glutamate ligase domain DJ40_1682 PF04101 Glycosyltransferase family 28 C-terminal domain DJ40_1682 PF03033 Glycosyltransferase family 28 N-terminal domain DJ40_1683 PF01098 Cell cycle protein DJ40_1684 PF08245 Mur ligase middle domain DJ40_1684 PF02875 Mur ligase family, glutamate ligase domain DJ40_1685 PF00953 Glycosyl transferase family 4 DJ40_1685 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DJ40_1686 PF01225 Mur ligase family, catalytic domain DJ40_1686 PF02875 Mur ligase family, glutamate ligase domain DJ40_1686 PF08245 Mur ligase middle domain DJ40_1687 PF01225 Mur ligase family, catalytic domain DJ40_1687 PF02875 Mur ligase family, glutamate ligase domain DJ40_1687 PF08245 Mur ligase middle domain DJ40_1688 PF00905 Penicillin binding protein transpeptidase domain DJ40_1688 PF03717 Penicillin-binding Protein dimerisation domain DJ40_1689 PF04999 Cell division protein FtsL DJ40_169 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DJ40_1690 PF01795 MraW methylase family DJ40_1691 PF02381 MraZ protein, putative antitoxin-like DJ40_1692 PF06610 L-alanine exporter DJ40_1693 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DJ40_1693 PF00356 Bacterial regulatory proteins, lacI family DJ40_1694 PF10369 Small subunit of acetolactate synthase DJ40_1695 PF00205 Thiamine pyrophosphate enzyme, central domain DJ40_1695 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DJ40_1695 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DJ40_1696 PF00501 AMP-binding enzyme DJ40_1697 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_1697 PF03466 LysR substrate binding domain DJ40_1699 PF08502 LeuA allosteric (dimerisation) domain DJ40_1699 PF00682 HMGL-like DJ40_17 PF01047 MarR family DJ40_170 PF00849 RNA pseudouridylate synthase DJ40_170 PF01479 S4 domain DJ40_1700 PF00180 Isocitrate/isopropylmalate dehydrogenase DJ40_1701 PF00330 Aconitase family (aconitate hydratase) DJ40_1702 PF00694 Aconitase C-terminal domain DJ40_1703 PF07690 Major Facilitator Superfamily DJ40_1704 PF12793 Sugar transport-related sRNA regulator N-term DJ40_1704 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DJ40_1707 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_1708 PF00005 ABC transporter DJ40_1709 PF09335 SNARE associated Golgi protein DJ40_171 PF01300 Telomere recombination DJ40_1710 PF00136 DNA polymerase family B DJ40_1710 PF03104 DNA polymerase family B, exonuclease domain DJ40_1711 PF18337 RapA N-terminal Tudor like domain DJ40_1711 PF18339 RapA N-terminal Tudor like domain 1 DJ40_1711 PF00271 Helicase conserved C-terminal domain DJ40_1711 PF12137 RNA polymerase recycling family C-terminal DJ40_1711 PF00176 SNF2 family N-terminal domain DJ40_1714 PF05736 OprF membrane domain DJ40_1714 PF00691 OmpA family DJ40_172 PF02811 PHP domain DJ40_1721 PF04717 Type VI secretion system, phage-baseplate injector DJ40_1722 PF00004 ATPase family associated with various cellular activities (AAA) DJ40_1722 PF07724 AAA domain (Cdc48 subfamily) DJ40_1722 PF10431 C-terminal, D2-small domain, of ClpB protein DJ40_1722 PF17871 AAA lid domain DJ40_173 PF00425 chorismate binding enzyme DJ40_173 PF04715 Anthranilate synthase component I, N terminal region DJ40_1731 PF00849 RNA pseudouridylate synthase DJ40_1732 PF05099 Tellurite resistance protein TerB DJ40_1732 PF00226 DnaJ domain DJ40_1733 PF04453 LPS transport system D DJ40_1733 PF03968 OstA-like protein DJ40_1734 PF09312 SurA N-terminal domain DJ40_1734 PF00639 PPIC-type PPIASE domain DJ40_1735 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DJ40_1736 PF00398 Ribosomal RNA adenine dimethylase DJ40_1737 PF04379 ApaG domain DJ40_1738 PF00149 Calcineurin-like phosphoesterase DJ40_174 PF00117 Glutamine amidotransferase class-I DJ40_1740 PF00186 Dihydrofolate reductase DJ40_1741 PF12821 Threonine/Serine exporter, ThrE DJ40_1742 PF06738 Putative threonine/serine exporter DJ40_1743 PF01810 LysE type translocator DJ40_1744 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DJ40_1744 PF02142 MGS-like domain DJ40_1744 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DJ40_1745 PF00117 Glutamine amidotransferase class-I DJ40_1745 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DJ40_1746 PF01113 Dihydrodipicolinate reductase, N-terminus DJ40_1746 PF05173 Dihydrodipicolinate reductase, C-terminus DJ40_1747 PF02401 LytB protein DJ40_1748 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DJ40_1749 PF01252 Signal peptidase (SPase) II DJ40_175 PF02885 Glycosyl transferase family, helical bundle domain DJ40_175 PF00591 Glycosyl transferase family, a/b domain DJ40_1750 PF00133 tRNA synthetases class I (I, L, M and V) DJ40_1750 PF08264 Anticodon-binding domain of tRNA DJ40_1750 PF06827 Zinc finger found in FPG and IleRS DJ40_1751 PF06574 FAD synthetase DJ40_1751 PF01687 Riboflavin kinase DJ40_1752 PF01649 Ribosomal protein S20 DJ40_1753 PF03466 LysR substrate binding domain DJ40_1753 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_1754 PF06965 Na+/H+ antiporter 1 DJ40_1755 PF00226 DnaJ domain DJ40_1755 PF01556 DnaJ C terminal domain DJ40_1755 PF00684 DnaJ central domain DJ40_1756 PF00012 Hsp70 protein DJ40_1757 PF01184 GPR1/FUN34/yaaH family DJ40_176 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DJ40_176 PF00218 Indole-3-glycerol phosphate synthase DJ40_1761 PF07690 Major Facilitator Superfamily DJ40_1762 PF00994 Probable molybdopterin binding domain DJ40_1763 PF00923 Transaldolase/Fructose-6-phosphate aldolase DJ40_1764 PF03883 Peroxide stress protein YaaA DJ40_1766 PF00291 Pyridoxal-phosphate dependent enzyme DJ40_1766 PF14821 Threonine synthase N terminus DJ40_1767 PF08544 GHMP kinases C terminal DJ40_1767 PF00288 GHMP kinases N terminal domain DJ40_1768 PF03447 Homoserine dehydrogenase, NAD binding domain DJ40_1768 PF01842 ACT domain DJ40_1768 PF13840 ACT domain DJ40_1768 PF00742 Homoserine dehydrogenase DJ40_1768 PF00696 Amino acid kinase family DJ40_177 PF00291 Pyridoxal-phosphate dependent enzyme DJ40_1770 PF00072 Response regulator receiver domain DJ40_1770 PF00486 Transcriptional regulatory protein, C terminal DJ40_1771 PF05981 CreA protein DJ40_1773 PF00300 Histidine phosphatase superfamily (branch 1) DJ40_1774 PF12833 Helix-turn-helix domain DJ40_1774 PF06445 GyrI-like small molecule binding domain DJ40_1775 PF01371 Trp repressor protein DJ40_1776 PF01931 Protein of unknown function DUF84 DJ40_1777 PF01464 Transglycosylase SLT domain DJ40_1777 PF14718 Soluble lytic murein transglycosylase L domain DJ40_1778 PF00689 Cation transporting ATPase, C-terminus DJ40_1778 PF00690 Cation transporter/ATPase, N-terminus DJ40_178 PF00290 Tryptophan synthase alpha chain DJ40_1780 PF17152 Periplasmic sensor domain DJ40_1780 PF00990 Diguanylate cyclase, GGDEF domain DJ40_1781 PF00691 OmpA family DJ40_1782 PF12848 ABC transporter DJ40_1782 PF00005 ABC transporter DJ40_1784 PF01381 Helix-turn-helix DJ40_1784 PF13521 AAA domain DJ40_1785 PF18073 Rubredoxin metal binding domain DJ40_1786 PF18429 Domain of unknown function (DUF5609) DJ40_1787 PF10144 Bacterial virulence factor haemolysin DJ40_1788 PF01048 Phosphorylase superfamily DJ40_1789 PF01676 Metalloenzyme superfamily DJ40_1790 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DJ40_1790 PF02885 Glycosyl transferase family, helical bundle domain DJ40_1790 PF00591 Glycosyl transferase family, a/b domain DJ40_1791 PF01791 DeoC/LacD family aldolase DJ40_1792 PF01773 Na+ dependent nucleoside transporter N-terminus DJ40_1792 PF07670 Nucleoside recognition DJ40_1792 PF07662 Na+ dependent nucleoside transporter C-terminus DJ40_1793 PF01026 TatD related DNase DJ40_1794 PF01734 Patatin-like phospholipase DJ40_1795 PF07043 Protein of unknown function (DUF1328) DJ40_1796 PF04972 BON domain DJ40_1797 PF16658 Class II release factor RF3, C-terminal domain DJ40_1797 PF00009 Elongation factor Tu GTP binding domain DJ40_1797 PF03144 Elongation factor Tu domain 2 DJ40_1798 PF00583 Acetyltransferase (GNAT) family DJ40_1799 PF03603 DNA polymerase III psi subunit DJ40_18 PF05433 Glycine zipper 2TM domain DJ40_180 PF03922 OmpW family DJ40_1800 PF05175 Methyltransferase small domain DJ40_1800 PF08468 Methyltransferase small domain N-terminal DJ40_1804 PF07256 Protein of unknown function (DUF1435) DJ40_1805 PF00990 Diguanylate cyclase, GGDEF domain DJ40_1806 PF01095 Pectinesterase DJ40_1808 PF00873 AcrB/AcrD/AcrF family DJ40_1809 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DJ40_1812 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DJ40_1813 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DJ40_1813 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DJ40_1814 PF04198 Putative sugar-binding domain DJ40_1814 PF00325 Bacterial regulatory proteins, crp family DJ40_1815 PF00005 ABC transporter DJ40_1816 PF02653 Branched-chain amino acid transport system / permease component DJ40_1817 PF02653 Branched-chain amino acid transport system / permease component DJ40_1818 PF13407 Periplasmic binding protein domain DJ40_1819 PF01791 DeoC/LacD family aldolase DJ40_1820 PF03992 Antibiotic biosynthesis monooxygenase DJ40_1821 PF10696 Protein of unknown function (DUF2501) DJ40_1822 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DJ40_1822 PF05524 PEP-utilising enzyme, N-terminal DJ40_1822 PF00381 PTS HPr component phosphorylation site DJ40_1822 PF00391 PEP-utilising enzyme, mobile domain DJ40_1822 PF02896 PEP-utilising enzyme, TIM barrel domain DJ40_1824 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DJ40_1825 PF12833 Helix-turn-helix domain DJ40_1826 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DJ40_1828 PF05987 Bacterial protein of unknown function (DUF898) DJ40_183 PF04279 Intracellular septation protein A DJ40_1830 PF02384 N-6 DNA Methylase DJ40_1830 PF12161 HsdM N-terminal domain DJ40_1832 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DJ40_1832 PF12008 Type I restriction and modification enzyme - subunit R C terminal DJ40_1832 PF18766 SWI2/SNF2 ATPase DJ40_1834 PF00589 Phage integrase family DJ40_1834 PF13356 Arm DNA-binding domain DJ40_1835 PF13356 Arm DNA-binding domain DJ40_1835 PF00589 Phage integrase family DJ40_184 PF03061 Thioesterase superfamily DJ40_1841 PF05638 Type VI secretion system effector, Hcp DJ40_185 PF03544 Gram-negative bacterial TonB protein C-terminal DJ40_1852 PF00589 Phage integrase family DJ40_1852 PF13356 Arm DNA-binding domain DJ40_1854 PF03739 Lipopolysaccharide export system permease LptF/LptG DJ40_1855 PF03739 Lipopolysaccharide export system permease LptF/LptG DJ40_1856 PF02789 Cytosol aminopeptidase family, N-terminal domain DJ40_1856 PF00883 Cytosol aminopeptidase family, catalytic domain DJ40_1857 PF04364 DNA polymerase III chi subunit, HolC DJ40_1858 PF00133 tRNA synthetases class I (I, L, M and V) DJ40_1858 PF10458 Valyl tRNA synthetase tRNA binding arm DJ40_1858 PF08264 Anticodon-binding domain of tRNA DJ40_1859 PF00583 Acetyltransferase (GNAT) family DJ40_1860 PF06877 Regulator of ribonuclease activity B DJ40_1861 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DJ40_1861 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DJ40_1862 PF04074 YhcH/YjgK/YiaL DJ40_1864 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_1865 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_1865 PF12911 N-terminal TM domain of oligopeptide transport permease C DJ40_1866 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DJ40_1866 PF00005 ABC transporter DJ40_1867 PF00005 ABC transporter DJ40_1867 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DJ40_1868 PF13597 Anaerobic ribonucleoside-triphosphate reductase DJ40_1868 PF03477 ATP cone domain DJ40_187 PF03795 YCII-related domain DJ40_1870 PF07702 UTRA domain DJ40_1870 PF00392 Bacterial regulatory proteins, gntR family DJ40_1871 PF06754 Phosphonate metabolism protein PhnG DJ40_1872 PF05845 Bacterial phosphonate metabolism protein (PhnH) DJ40_1873 PF05861 Bacterial phosphonate metabolism protein (PhnI) DJ40_1874 PF06007 Phosphonate metabolism protein PhnJ DJ40_1875 PF00005 ABC transporter DJ40_1876 PF00005 ABC transporter DJ40_1877 PF07969 Amidohydrolase family DJ40_1879 PF12706 Beta-lactamase superfamily domain DJ40_1880 PF13460 NAD(P)H-binding DJ40_1883 PF03459 TOBE domain DJ40_1883 PF17912 MalK OB fold domain DJ40_1883 PF00005 ABC transporter DJ40_1884 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_1890 PF01541 GIY-YIG catalytic domain DJ40_1891 PF13508 Acetyltransferase (GNAT) domain DJ40_1895 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DJ40_1895 PF02321 Outer membrane efflux protein DJ40_1896 PF00873 AcrB/AcrD/AcrF family DJ40_1897 PF00529 HlyD membrane-fusion protein of T1SS DJ40_1897 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DJ40_1899 PF00296 Luciferase-like monooxygenase DJ40_19 PF03702 Anhydro-N-acetylmuramic acid kinase DJ40_190 PF13505 Outer membrane protein beta-barrel domain DJ40_1900 PF01381 Helix-turn-helix DJ40_1902 PF03880 DbpA RNA binding domain DJ40_1902 PF00270 DEAD/DEAH box helicase DJ40_1902 PF12343 Cold shock protein DEAD box A DJ40_1902 PF00271 Helicase conserved C-terminal domain DJ40_1903 PF13181 Tetratricopeptide repeat DJ40_1903 PF07719 Tetratricopeptide repeat DJ40_1904 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DJ40_1904 PF00013 KH domain DJ40_1904 PF00575 S1 RNA binding domain DJ40_1904 PF03725 3' exoribonuclease family, domain 2 DJ40_1904 PF01138 3' exoribonuclease family, domain 1 DJ40_1905 PF00312 Ribosomal protein S15 DJ40_1906 PF09157 Pseudouridine synthase II TruB, C-terminal DJ40_1906 PF01509 TruB family pseudouridylate synthase (N terminal domain) DJ40_1906 PF16198 tRNA pseudouridylate synthase B C-terminal domain DJ40_1907 PF02033 Ribosome-binding factor A DJ40_1908 PF00009 Elongation factor Tu GTP binding domain DJ40_1908 PF03144 Elongation factor Tu domain 2 DJ40_1908 PF11987 Translation-initiation factor 2 DJ40_1908 PF08364 Bacterial translation initiation factor IF-2 associated region DJ40_1908 PF04760 Translation initiation factor IF-2, N-terminal region DJ40_1909 PF13184 NusA-like KH domain DJ40_1909 PF08529 NusA N-terminal domain DJ40_1909 PF00575 S1 RNA binding domain DJ40_191 PF13091 PLD-like domain DJ40_191 PF13396 Phospholipase_D-nuclease N-terminal DJ40_1910 PF17384 RimP C-terminal SH3 domain DJ40_1910 PF02576 RimP N-terminal domain DJ40_1913 PF03840 Preprotein translocase SecG subunit DJ40_1914 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DJ40_1914 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DJ40_1914 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DJ40_1914 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DJ40_1915 PF00809 Pterin binding enzyme DJ40_1916 PF01434 Peptidase family M41 DJ40_1916 PF06480 FtsH Extracellular DJ40_1916 PF17862 AAA+ lid domain DJ40_1916 PF00004 ATPase family associated with various cellular activities (AAA) DJ40_1917 PF01728 FtsJ-like methyltransferase DJ40_1918 PF01985 CRS1 / YhbY (CRM) domain DJ40_1919 PF03449 Transcription elongation factor, N-terminal DJ40_1919 PF01272 Transcription elongation factor, GreA/GreB, C-term DJ40_192 PF04269 Protein of unknown function, DUF440 DJ40_1920 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DJ40_1921 PF00072 Response regulator receiver domain DJ40_1921 PF00486 Transcriptional regulatory protein, C terminal DJ40_1922 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_1922 PF00512 His Kinase A (phospho-acceptor) domain DJ40_1922 PF00672 HAMP domain DJ40_1923 PF01926 50S ribosome-binding GTPase DJ40_1923 PF01018 GTP1/OBG DJ40_1928 PF05638 Type VI secretion system effector, Hcp DJ40_1938 PF00892 EamA-like transporter family DJ40_1939 PF01016 Ribosomal L27 protein DJ40_194 PF00005 ABC transporter DJ40_194 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DJ40_1940 PF00829 Ribosomal prokaryotic L21 protein DJ40_1941 PF00348 Polyprenyl synthetase DJ40_1943 PF13693 Winged helix-turn-helix DNA-binding DJ40_1944 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DJ40_1944 PF00056 lactate/malate dehydrogenase, NAD binding domain DJ40_1945 PF01316 Arginine repressor, DNA binding domain DJ40_1945 PF02863 Arginine repressor, C-terminal domain DJ40_1947 PF08245 Mur ligase middle domain DJ40_1947 PF02875 Mur ligase family, glutamate ligase domain DJ40_1947 PF01225 Mur ligase family, catalytic domain DJ40_1948 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DJ40_1949 PF00719 Inorganic pyrophosphatase DJ40_1950 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like DJ40_1951 PF04357 TamB, inner membrane protein subunit of TAM complex DJ40_1952 PF01103 Surface antigen DJ40_1952 PF07244 Surface antigen variable number repeat DJ40_1952 PF17243 POTRA domain TamA domain 1 DJ40_1953 PF01625 Peptide methionine sulfoxide reductase DJ40_1954 PF03471 Transporter associated domain DJ40_1954 PF01595 Cyclin M transmembrane N-terminal domain DJ40_1954 PF00571 CBS domain DJ40_1955 PF06526 Protein of unknown function (DUF1107) DJ40_1956 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) DJ40_1957 PF00459 Inositol monophosphatase family DJ40_1958 PF00149 Calcineurin-like phosphoesterase DJ40_1958 PF02872 5'-nucleotidase, C-terminal domain DJ40_1959 PF04405 Domain of Unknown function (DUF542) DJ40_1959 PF01814 Hemerythrin HHE cation binding domain DJ40_1960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DJ40_1960 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DJ40_1961 PF08525 Opacity-associated protein A N-terminal motif DJ40_1961 PF04225 Opacity-associated protein A LysM-like domain DJ40_1963 PF03948 Ribosomal protein L9, C-terminal domain DJ40_1963 PF01281 Ribosomal protein L9, N-terminal domain DJ40_1964 PF01084 Ribosomal protein S18 DJ40_1965 PF01250 Ribosomal protein S6 DJ40_1967 PF00326 Prolyl oligopeptidase family DJ40_1968 PF07338 Protein of unknown function (DUF1471) DJ40_1969 PF02770 Acyl-CoA dehydrogenase, middle domain DJ40_1969 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DJ40_1969 PF18158 Adaptive response protein AidB N-terminal domain DJ40_197 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_197 PF12911 N-terminal TM domain of oligopeptide transport permease C DJ40_1970 PF00588 SpoU rRNA Methylase family DJ40_1970 PF08032 RNA 2'-O ribose methyltransferase substrate binding DJ40_1971 PF08461 Ribonuclease R winged-helix domain DJ40_1971 PF00773 RNB domain DJ40_1971 PF17876 Cold shock domain DJ40_1971 PF08206 Ribonuclease B OB domain DJ40_1971 PF00575 S1 RNA binding domain DJ40_1972 PF02082 Transcriptional regulator DJ40_1973 PF00709 Adenylosuccinate synthetase DJ40_1974 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) DJ40_1975 PF01145 SPFH domain / Band 7 family DJ40_1976 PF12221 Bacterial membrane protein N terminal DJ40_1976 PF01145 SPFH domain / Band 7 family DJ40_1977 PF13167 GTP-binding GTPase N-terminal DJ40_1977 PF01926 50S ribosome-binding GTPase DJ40_1977 PF16360 GTP-binding GTPase Middle Region DJ40_1978 PF17209 Hfq protein DJ40_198 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_1980 PF01119 DNA mismatch repair protein, C-terminal domain DJ40_1980 PF08676 MutL C terminal dimerisation domain DJ40_1981 PF01520 N-acetylmuramoyl-L-alanine amidase DJ40_1982 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DJ40_1983 PF01256 Carbohydrate kinase DJ40_1983 PF03853 YjeF-related protein N-terminus DJ40_1984 PF08331 Domain of unknown function (DUF1730) DJ40_1989 PF00929 Exonuclease DJ40_199 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DJ40_1990 PF03193 RsgA GTPase DJ40_1991 PF02666 Phosphatidylserine decarboxylase DJ40_1992 PF12794 Mechanosensitive ion channel inner membrane domain 1 DJ40_1992 PF12795 Mechanosensitive ion channel porin domain DJ40_1992 PF00924 Mechanosensitive ion channel DJ40_1993 PF00152 tRNA synthetases class II (D, K and N) DJ40_1994 PF02910 Fumarate reductase flavoprotein C-term DJ40_1994 PF00890 FAD binding domain DJ40_1995 PF13183 4Fe-4S dicluster domain DJ40_1995 PF13085 2Fe-2S iron-sulfur cluster binding domain DJ40_1996 PF02300 Fumarate reductase subunit C DJ40_1997 PF02313 Fumarate reductase subunit D DJ40_1998 PF00893 Small Multidrug Resistance protein DJ40_1999 PF08207 Elongation factor P (EF-P) KOW-like domain DJ40_1999 PF09285 Elongation factor P, C-terminal DJ40_1999 PF01132 Elongation factor P (EF-P) OB domain DJ40_2 PF03466 LysR substrate binding domain DJ40_2 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_20 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme DJ40_200 PF01914 MarC family integral membrane protein DJ40_2000 PF04055 Radical SAM superfamily DJ40_2001 PF13698 Domain of unknown function (DUF4156) DJ40_2002 PF00118 TCP-1/cpn60 chaperonin family DJ40_2003 PF00166 Chaperonin 10 Kd subunit DJ40_2004 PF04186 FxsA cytoplasmic membrane protein DJ40_2005 PF10415 Fumarase C C-terminus DJ40_2005 PF00206 Lyase DJ40_2006 PF03605 Anaerobic c4-dicarboxylate membrane transporter DJ40_2007 PF03091 CutA1 divalent ion tolerance protein DJ40_2008 PF11412 Disulphide bond corrector protein DsbC DJ40_2008 PF02683 Cytochrome C biogenesis protein transmembrane region DJ40_2009 PF00384 Molybdopterin oxidoreductase DJ40_2009 PF01568 Molydopterin dinucleotide binding domain DJ40_2009 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DJ40_201 PF00171 Aldehyde dehydrogenase family DJ40_201 PF00465 Iron-containing alcohol dehydrogenase DJ40_2010 PF12800 4Fe-4S binding domain DJ40_2010 PF13247 4Fe-4S dicluster domain DJ40_2011 PF07992 Pyridine nucleotide-disulphide oxidoreductase DJ40_2011 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DJ40_2011 PF13247 4Fe-4S dicluster domain DJ40_2018 PF06379 L-rhamnose-proton symport protein (RhaT) DJ40_202 PF00265 Thymidine kinase DJ40_2021 PF02311 AraC-like ligand binding domain DJ40_2021 PF12833 Helix-turn-helix domain DJ40_2024 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DJ40_2024 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DJ40_2025 PF06134 L-rhamnose isomerase (RhaA) DJ40_2026 PF00596 Class II Aldolase and Adducin N-terminal domain DJ40_2027 PF00465 Iron-containing alcohol dehydrogenase DJ40_2028 PF05336 L-rhamnose mutarotase DJ40_2029 PF00436 Single-strand binding protein family DJ40_203 PF00816 H-NS histone family DJ40_2030 PF17755 UvrA DNA-binding domain DJ40_2030 PF17760 UvrA interaction domain DJ40_2030 PF00005 ABC transporter DJ40_2031 PF04237 YjbR DJ40_2032 PF00155 Aminotransferase class I and II DJ40_2033 PF01168 Alanine racemase, N-terminal domain DJ40_2033 PF00842 Alanine racemase, C-terminal domain DJ40_2034 PF03796 DnaB-like helicase C terminal domain DJ40_2034 PF00772 DnaB-like helicase N terminal domain DJ40_2035 PF08240 Alcohol dehydrogenase GroES-like domain DJ40_2035 PF00107 Zinc-binding dehydrogenase DJ40_2036 PF09583 Phage shock protein G (Phageshock_PspG) DJ40_2037 PF01207 Dihydrouridine synthase (Dus) DJ40_2038 PF01475 Ferric uptake regulator family DJ40_2039 PF01726 LexA DNA binding domain DJ40_2039 PF00717 Peptidase S24-like DJ40_2040 PF01219 Prokaryotic diacylglycerol kinase DJ40_2041 PF01553 Acyltransferase DJ40_2042 PF01040 UbiA prenyltransferase family DJ40_2043 PF04345 Chorismate lyase DJ40_2044 PF12951 Passenger-associated-transport-repeat DJ40_2045 PF01565 FAD binding domain DJ40_2045 PF08031 Berberine and berberine like DJ40_2048 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DJ40_2049 PF00577 Outer membrane usher protein DJ40_2049 PF13954 PapC N-terminal domain DJ40_2049 PF13953 PapC C-terminal domain DJ40_2051 PF02342 TerD domain DJ40_2052 PF02342 TerD domain DJ40_2053 PF03741 Integral membrane protein TerC family DJ40_2054 PF05099 Tellurite resistance protein TerB DJ40_2055 PF02342 TerD domain DJ40_2056 PF02342 TerD domain DJ40_206 PF00072 Response regulator receiver domain DJ40_2060 PF15608 PELOTA RNA binding domain DJ40_2060 PF11202 Phosphoribosyl transferase (PRTase) DJ40_2064 PF04055 Radical SAM superfamily DJ40_2065 PF06228 Haem utilisation ChuX/HutX DJ40_2066 PF13460 NAD(P)H-binding DJ40_2067 PF10636 Hemin uptake protein hemP DJ40_2068 PF07715 TonB-dependent Receptor Plug Domain DJ40_2068 PF00593 TonB dependent receptor DJ40_2069 PF05171 Haemin-degrading HemS.ChuX domain DJ40_207 PF02810 SEC-C motif DJ40_2070 PF01497 Periplasmic binding protein DJ40_2071 PF01032 FecCD transport family DJ40_2072 PF00005 ABC transporter DJ40_2073 PF01053 Cys/Met metabolism PLP-dependent enzyme DJ40_2074 PF03222 Tryptophan/tyrosine permease family DJ40_2075 PF03466 LysR substrate binding domain DJ40_2075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_2076 PF01206 Sulfurtransferase TusA DJ40_2077 PF04143 Sulphur transport DJ40_2078 PF01312 FlhB HrpN YscU SpaS Family DJ40_2079 PF01311 Bacterial export proteins, family 1 DJ40_208 PF00551 Formyl transferase DJ40_208 PF01842 ACT domain DJ40_2080 PF00813 FliP family DJ40_2084 PF18269 T3SS EscN ATPase C-terminal domain DJ40_2084 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DJ40_2085 PF00771 FHIPEP family DJ40_2088 PF01514 Secretory protein of YscJ/FliF family DJ40_2092 PF12833 Helix-turn-helix domain DJ40_2092 PF14525 AraC-binding-like domain DJ40_2096 PF01627 Hpt domain DJ40_2096 PF00512 His Kinase A (phospho-acceptor) domain DJ40_2096 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_2096 PF00672 HAMP domain DJ40_2096 PF00072 Response regulator receiver domain DJ40_2096 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DJ40_2097 PF00072 Response regulator receiver domain DJ40_2097 PF00196 Bacterial regulatory proteins, luxR family DJ40_2098 PF00375 Sodium:dicarboxylate symporter family DJ40_2099 PF16177 Acetyl-coenzyme A synthetase N-terminus DJ40_2099 PF00501 AMP-binding enzyme DJ40_2099 PF13193 AMP-binding enzyme C-terminal domain DJ40_21 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DJ40_21 PF01243 Pyridoxamine 5'-phosphate oxidase DJ40_210 PF03466 LysR substrate binding domain DJ40_210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_2100 PF04341 Protein of unknown function, DUF485 DJ40_2101 PF00474 Sodium:solute symporter family DJ40_2103 PF13683 Integrase core domain DJ40_2103 PF13276 HTH-like domain DJ40_2104 PF01527 Transposase DJ40_211 PF03372 Endonuclease/Exonuclease/phosphatase family DJ40_2111 PF02142 MGS-like domain DJ40_2111 PF01808 AICARFT/IMPCHase bienzyme DJ40_2112 PF02844 Phosphoribosylglycinamide synthetase, N domain DJ40_2112 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DJ40_2112 PF02843 Phosphoribosylglycinamide synthetase, C domain DJ40_2113 PF07356 Protein of unknown function (DUF1481) DJ40_2114 PF00216 Bacterial DNA-binding protein DJ40_2115 PF04222 Protein of unknown function (DUF416) DJ40_2116 PF04493 Endonuclease V DJ40_2117 PF01208 Uroporphyrinogen decarboxylase (URO-D) DJ40_2119 PF09297 NADH pyrophosphatase zinc ribbon domain DJ40_2119 PF00293 NUDIX domain DJ40_212 PF00293 NUDIX domain DJ40_2120 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ DJ40_2121 PF13667 ThiC-associated domain DJ40_2121 PF01964 Radical SAM ThiC family DJ40_2122 PF02581 Thiamine monophosphate synthase DJ40_2123 PF00899 ThiF family DJ40_2125 PF05690 Thiazole biosynthesis protein ThiG DJ40_2126 PF06968 Biotin and Thiamin Synthesis associated domain DJ40_2126 PF04055 Radical SAM superfamily DJ40_2127 PF04983 RNA polymerase Rpb1, domain 3 DJ40_2127 PF05000 RNA polymerase Rpb1, domain 4 DJ40_2127 PF04998 RNA polymerase Rpb1, domain 5 DJ40_2127 PF00623 RNA polymerase Rpb1, domain 2 DJ40_2127 PF04997 RNA polymerase Rpb1, domain 1 DJ40_2128 PF10385 RNA polymerase beta subunit external 1 domain DJ40_2128 PF04560 RNA polymerase Rpb2, domain 7 DJ40_2128 PF00562 RNA polymerase Rpb2, domain 6 DJ40_2128 PF04565 RNA polymerase Rpb2, domain 3 DJ40_2128 PF04561 RNA polymerase Rpb2, domain 2 DJ40_2128 PF04563 RNA polymerase beta subunit DJ40_213 PF07383 Protein of unknown function (DUF1496) DJ40_2130 PF16320 Ribosomal protein L7/L12 dimerisation domain DJ40_2130 PF00542 Ribosomal protein L7/L12 C-terminal domain DJ40_2131 PF00466 Ribosomal protein L10 DJ40_2132 PF00687 Ribosomal protein L1p/L10e family DJ40_2133 PF00298 Ribosomal protein L11, RNA binding domain DJ40_2133 PF03946 Ribosomal protein L11, N-terminal domain DJ40_2134 PF00467 KOW motif DJ40_2134 PF02357 Transcription termination factor nusG DJ40_2135 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DJ40_2136 PF00009 Elongation factor Tu GTP binding domain DJ40_2136 PF03143 Elongation factor Tu C-terminal domain DJ40_2136 PF03144 Elongation factor Tu domain 2 DJ40_214 PF01751 Toprim domain DJ40_214 PF01131 DNA topoisomerase DJ40_2141 PF13673 Acetyltransferase (GNAT) domain DJ40_2142 PF00485 Phosphoribulokinase / Uridine kinase family DJ40_2143 PF03099 Biotin/lipoate A/B protein ligase family DJ40_2143 PF08279 HTH domain DJ40_2143 PF02237 Biotin protein ligase C terminal domain DJ40_2144 PF01565 FAD binding domain DJ40_2144 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DJ40_215 PF00586 AIR synthase related protein, N-terminal domain DJ40_215 PF02769 AIR synthase related protein, C-terminal domain DJ40_2150 PF12724 Flavodoxin domain DJ40_2151 PF02386 Cation transport protein DJ40_2152 PF01205 Uncharacterized protein family UPF0029 DJ40_2152 PF09186 Domain of unknown function (DUF1949) DJ40_2153 PF00557 Metallopeptidase family M24 DJ40_2154 PF00378 Enoyl-CoA hydratase/isomerase DJ40_2154 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DJ40_2154 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DJ40_2155 PF02803 Thiolase, C-terminal domain DJ40_2155 PF00108 Thiolase, N-terminal domain DJ40_2156 PF00175 Oxidoreductase NAD-binding domain DJ40_2156 PF00970 Oxidoreductase FAD-binding domain DJ40_2157 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DJ40_2158 PF02357 Transcription termination factor nusG DJ40_2159 PF00490 Delta-aminolevulinic acid dehydratase DJ40_216 PF00881 Nitroreductase family DJ40_2160 PF01026 TatD related DNase DJ40_2161 PF00902 Sec-independent protein translocase protein (TatC) DJ40_2163 PF02416 mttA/Hcf106 family DJ40_2164 PF03109 ABC1 family DJ40_2165 PF02036 SCP-2 sterol transfer family DJ40_2166 PF01209 ubiE/COQ5 methyltransferase family DJ40_2167 PF02646 RmuC family DJ40_2168 PF09335 SNARE associated Golgi protein DJ40_2169 PF02554 Carbon starvation protein CstA DJ40_2169 PF13722 5TM C-terminal transporter carbon starvation CstA DJ40_217 PF01343 Peptidase family S49 DJ40_2171 PF01048 Phosphorylase superfamily DJ40_2172 PF01738 Dienelactone hydrolase family DJ40_2173 PF08267 Cobalamin-independent synthase, N-terminal domain DJ40_2173 PF01717 Cobalamin-independent synthase, Catalytic domain DJ40_2174 PF00892 EamA-like transporter family DJ40_2175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_2175 PF03466 LysR substrate binding domain DJ40_2176 PF03547 Membrane transport protein DJ40_2177 PF03009 Glycerophosphoryl diester phosphodiesterase family DJ40_2178 PF17912 MalK OB fold domain DJ40_2178 PF00005 ABC transporter DJ40_2179 PF00005 ABC transporter DJ40_2179 PF17912 MalK OB fold domain DJ40_218 PF17763 Glutaminase/Asparaginase C-terminal domain DJ40_218 PF00710 Asparaginase, N-terminal DJ40_2180 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_2181 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_2182 PF13416 Bacterial extracellular solute-binding protein DJ40_219 PF00857 Isochorismatase family DJ40_2190 PF00005 ABC transporter DJ40_2191 PF00005 ABC transporter DJ40_2191 PF12399 Branched-chain amino acid ATP-binding cassette transporter DJ40_2192 PF11862 Domain of unknown function (DUF3382) DJ40_2192 PF02653 Branched-chain amino acid transport system / permease component DJ40_2193 PF02653 Branched-chain amino acid transport system / permease component DJ40_2194 PF13458 Periplasmic binding protein DJ40_2195 PF12568 Acetyltransferase (GNAT) domain, PanZ DJ40_2196 PF04545 Sigma-70, region 4 DJ40_2196 PF04542 Sigma-70 region 2 DJ40_2196 PF00140 Sigma-70 factor, region 1.2 DJ40_2197 PF02687 FtsX-like permease family DJ40_2197 PF18075 FtsX extracellular domain DJ40_2198 PF00005 ABC transporter DJ40_2199 PF02881 SRP54-type protein, helical bundle domain DJ40_2199 PF00448 SRP54-type protein, GTPase domain DJ40_2199 PF02881 SRP54-type protein, helical bundle domain DJ40_2199 PF00448 SRP54-type protein, GTPase domain DJ40_22 PF01479 S4 domain DJ40_22 PF00579 tRNA synthetases class I (W and Y) DJ40_220 PF07023 Protein of unknown function (DUF1315) DJ40_2201 PF06611 Protein of unknown function (DUF1145) DJ40_2204 PF07947 YhhN family DJ40_2205 PF00403 Heavy-metal-associated domain DJ40_2206 PF01206 Sulfurtransferase TusA DJ40_2207 PF02592 Putative vitamin uptake transporter DJ40_2208 PF08786 DcrB DJ40_2209 PF02754 Cysteine-rich domain DJ40_2209 PF13183 4Fe-4S dicluster domain DJ40_221 PF01641 SelR domain DJ40_2210 PF00890 FAD binding domain DJ40_2211 PF01266 FAD dependent oxidoreductase DJ40_2211 PF04324 BFD-like [2Fe-2S] binding domain DJ40_2212 PF03009 Glycerophosphoryl diester phosphodiesterase family DJ40_2215 PF12146 Serine aminopeptidase, S33 DJ40_2216 PF01810 LysE type translocator DJ40_2217 PF01810 LysE type translocator DJ40_2218 PF00570 HRDC domain DJ40_2218 PF00270 DEAD/DEAH box helicase DJ40_2218 PF16124 RecQ zinc-binding DJ40_2218 PF09382 RQC domain DJ40_2218 PF00271 Helicase conserved C-terminal domain DJ40_2219 PF02253 Phospholipase A1 DJ40_222 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DJ40_222 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DJ40_2220 PF03061 Thioesterase superfamily DJ40_2221 PF00892 EamA-like transporter family DJ40_2222 PF01544 CorA-like Mg2+ transporter protein DJ40_2223 PF09370 Phosphoenolpyruvate hydrolase-like DJ40_2226 PF13361 UvrD-like helicase C-terminal domain DJ40_2226 PF00580 UvrD/REP helicase N-terminal domain DJ40_2227 PF13419 Haloacid dehalogenase-like hydrolase DJ40_2228 PF02899 Phage integrase, N-terminal SAM-like domain DJ40_2228 PF00589 Phage integrase family DJ40_2229 PF04340 Protein of unknown function, DUF484 DJ40_223 PF01263 Aldose 1-epimerase DJ40_2230 PF01678 Diaminopimelate epimerase DJ40_2231 PF13627 Prokaryotic lipoprotein-attachment site DJ40_2232 PF01491 Frataxin-like domain DJ40_2234 PF12633 Adenylate cyclase NT domain DJ40_2234 PF01295 Adenylate cyclase, class-I DJ40_2235 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DJ40_2235 PF03900 Porphobilinogen deaminase, C-terminal domain DJ40_2236 PF02602 Uroporphyrinogen-III synthase HemD DJ40_2237 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase DJ40_2238 PF07719 Tetratricopeptide repeat DJ40_2238 PF07219 HemY protein N-terminus DJ40_224 PF06629 MltA-interacting protein MipA DJ40_2244 PF00324 Amino acid permease DJ40_2245 PF03808 Glycosyl transferase WecB/TagA/CpsF family DJ40_2246 PF06899 WzyE protein, O-antigen assembly polymerase DJ40_2247 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 DJ40_2248 PF01943 Polysaccharide biosynthesis protein DJ40_2249 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DJ40_225 PF06798 PrkA serine protein kinase C-terminal domain DJ40_225 PF08298 PrkA AAA domain DJ40_2251 PF00483 Nucleotidyl transferase DJ40_2252 PF16363 GDP-mannose 4,6 dehydratase DJ40_2253 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DJ40_2253 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DJ40_2253 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DJ40_2254 PF02350 UDP-N-acetylglucosamine 2-epimerase DJ40_2255 PF02706 Chain length determinant protein DJ40_2256 PF00953 Glycosyl transferase family 4 DJ40_2257 PF07498 Rho termination factor, N-terminal domain DJ40_2257 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DJ40_2257 PF07497 Rho termination factor, RNA-binding domain DJ40_2258 PF00085 Thioredoxin DJ40_2259 PF00271 Helicase conserved C-terminal domain DJ40_2259 PF00270 DEAD/DEAH box helicase DJ40_226 PF04285 Protein of unknown function (DUF444) DJ40_2260 PF02541 Ppx/GppA phosphatase family DJ40_2261 PF13361 UvrD-like helicase C-terminal domain DJ40_2261 PF00580 UvrD/REP helicase N-terminal domain DJ40_2265 PF02753 Pili assembly chaperone PapD, C-terminal domain DJ40_2265 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DJ40_2266 PF13953 PapC C-terminal domain DJ40_2266 PF13954 PapC N-terminal domain DJ40_2266 PF00577 Outer membrane usher protein DJ40_2268 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DJ40_2268 PF02753 Pili assembly chaperone PapD, C-terminal domain DJ40_2269 PF01320 Colicin immunity protein / pyocin immunity protein DJ40_2270 PF06958 S-type Pyocin DJ40_2271 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DJ40_2271 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DJ40_2272 PF03466 LysR substrate binding domain DJ40_2272 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_2278 PF00291 Pyridoxal-phosphate dependent enzyme DJ40_2278 PF00585 C-terminal regulatory domain of Threonine dehydratase DJ40_2279 PF00920 Dehydratase family DJ40_228 PF03466 LysR substrate binding domain DJ40_228 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_2280 PF01063 Amino-transferase class IV DJ40_2282 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DJ40_2282 PF00205 Thiamine pyrophosphate enzyme, central domain DJ40_2282 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DJ40_2283 PF13335 Magnesium chelatase, subunit ChlI C-terminal DJ40_2283 PF01078 Magnesium chelatase, subunit ChlI DJ40_2284 PF04219 Protein of unknown function, DUF DJ40_2285 PF02653 Branched-chain amino acid transport system / permease component DJ40_2286 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_2286 PF03466 LysR substrate binding domain DJ40_2287 PF02653 Branched-chain amino acid transport system / permease component DJ40_2288 PF00005 ABC transporter DJ40_2289 PF13407 Periplasmic binding protein domain DJ40_229 PF05726 Pirin C-terminal cupin domain DJ40_229 PF02678 Pirin DJ40_2297 PF01177 Asp/Glu/Hydantoin racemase DJ40_2298 PF00593 TonB dependent receptor DJ40_2298 PF07715 TonB-dependent Receptor Plug Domain DJ40_2299 PF05958 tRNA (Uracil-5-)-methyltransferase DJ40_23 PF08543 Phosphomethylpyrimidine kinase DJ40_230 PF07690 Major Facilitator Superfamily DJ40_2300 PF07226 Protein of unknown function (DUF1422) DJ40_2301 PF00440 Bacterial regulatory proteins, tetR family DJ40_2302 PF03466 LysR substrate binding domain DJ40_2302 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_2303 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DJ40_2303 PF07992 Pyridine nucleotide-disulphide oxidoreductase DJ40_2304 PF00462 Glutaredoxin DJ40_2304 PF08534 Redoxin DJ40_2305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DJ40_2305 PF07992 Pyridine nucleotide-disulphide oxidoreductase DJ40_2306 PF03544 Gram-negative bacterial TonB protein C-terminal DJ40_2307 PF00529 HlyD membrane-fusion protein of T1SS DJ40_2308 PF00005 ABC transporter DJ40_2308 PF00664 ABC transporter transmembrane region DJ40_231 PF01266 FAD dependent oxidoreductase DJ40_2312 PF00206 Lyase DJ40_2312 PF14698 Argininosuccinate lyase C-terminal DJ40_2313 PF00696 Amino acid kinase family DJ40_2314 PF02774 Semialdehyde dehydrogenase, dimerisation domain DJ40_2314 PF01118 Semialdehyde dehydrogenase, NAD binding domain DJ40_2315 PF01546 Peptidase family M20/M25/M40 DJ40_2315 PF07687 Peptidase dimerisation domain DJ40_2316 PF00311 Phosphoenolpyruvate carboxylase DJ40_2317 PF02219 Methylenetetrahydrofolate reductase DJ40_2318 PF00696 Amino acid kinase family DJ40_2318 PF00742 Homoserine dehydrogenase DJ40_2318 PF03447 Homoserine dehydrogenase, NAD binding domain DJ40_2319 PF01053 Cys/Met metabolism PLP-dependent enzyme DJ40_232 PF04293 SpoVR like protein DJ40_2320 PF01340 Met Apo-repressor, MetJ DJ40_2321 PF05360 yiaA/B two helix domain DJ40_2322 PF01197 Ribosomal protein L31 DJ40_2323 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DJ40_2323 PF00270 DEAD/DEAH box helicase DJ40_2323 PF00271 Helicase conserved C-terminal domain DJ40_2323 PF18074 Primosomal protein N C-terminal domain DJ40_2323 PF17764 3′ DNA-binding domain (3′BD) DJ40_2325 PF00356 Bacterial regulatory proteins, lacI family DJ40_2326 PF05036 Sporulation related domain DJ40_2327 PF00227 Proteasome subunit DJ40_2328 PF07724 AAA domain (Cdc48 subfamily) DJ40_2328 PF00004 ATPase family associated with various cellular activities (AAA) DJ40_2328 PF10431 C-terminal, D2-small domain, of ClpB protein DJ40_2329 PF01040 UbiA prenyltransferase family DJ40_233 PF07840 FadR C-terminal domain DJ40_233 PF00392 Bacterial regulatory proteins, gntR family DJ40_2330 PF03737 Aldolase/RraA DJ40_2333 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DJ40_2333 PF00529 HlyD membrane-fusion protein of T1SS DJ40_2334 PF00664 ABC transporter transmembrane region DJ40_2334 PF00005 ABC transporter DJ40_2334 PF03412 Peptidase C39 family DJ40_2335 PF06005 Cell division protein ZapB DJ40_2336 PF00230 Major intrinsic protein DJ40_2337 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DJ40_2337 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DJ40_2338 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DJ40_2339 PF00970 Oxidoreductase FAD-binding domain DJ40_2339 PF00175 Oxidoreductase NAD-binding domain DJ40_234 PF06450 Bacterial Na+/H+ antiporter B (NhaB) DJ40_2340 PF05656 Protein of unknown function (DUF805) DJ40_2341 PF07305 Protein of unknown function (DUF1454) DJ40_2342 PF00121 Triosephosphate isomerase DJ40_2343 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_2343 PF03466 LysR substrate binding domain DJ40_2344 PF02585 GlcNAc-PI de-N-acetylase DJ40_2345 PF03737 Aldolase/RraA DJ40_2346 PF00939 Sodium:sulfate symporter transmembrane region DJ40_2349 PF00365 Phosphofructokinase DJ40_235 PF02600 Disulfide bond formation protein DsbB DJ40_2350 PF01545 Cation efflux family DJ40_2350 PF16916 Dimerisation domain of Zinc Transporter DJ40_2351 PF04754 Putative transposase, YhgA-like DJ40_2352 PF07813 LTXXQ motif family protein DJ40_2353 PF00072 Response regulator receiver domain DJ40_2353 PF00486 Transcriptional regulatory protein, C terminal DJ40_2354 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_2354 PF16527 Two-component sensor protein CpxA, periplasmic domain DJ40_2354 PF00672 HAMP domain DJ40_2354 PF00512 His Kinase A (phospho-acceptor) domain DJ40_2355 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DJ40_2355 PF02805 Metal binding domain of Ada DJ40_2355 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DJ40_2355 PF12833 Helix-turn-helix domain DJ40_2356 PF00588 SpoU rRNA Methylase family DJ40_2357 PF06426 Serine acetyltransferase, N-terminal DJ40_2357 PF00132 Bacterial transferase hexapeptide (six repeats) DJ40_2358 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DJ40_2358 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DJ40_2359 PF02556 Preprotein translocase subunit SecB DJ40_236 PF01797 Transposase IS200 like DJ40_2360 PF00462 Glutaredoxin DJ40_2361 PF00581 Rhodanese-like domain DJ40_2362 PF01676 Metalloenzyme superfamily DJ40_2362 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DJ40_2363 PF01551 Peptidase family M23 DJ40_2364 PF04748 Divergent polysaccharide deacetylase DJ40_2365 PF08240 Alcohol dehydrogenase GroES-like domain DJ40_2365 PF00107 Zinc-binding dehydrogenase DJ40_2366 PF00155 Aminotransferase class I and II DJ40_2367 PF01370 NAD dependent epimerase/dehydratase family DJ40_2368 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DJ40_2369 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DJ40_2370 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DJ40_2371 PF00535 Glycosyl transferase family 2 DJ40_2372 PF01467 Cytidylyltransferase-like DJ40_2373 PF06827 Zinc finger found in FPG and IleRS DJ40_2373 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DJ40_2373 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DJ40_2374 PF00471 Ribosomal protein L33 DJ40_2375 PF00830 Ribosomal L28 family DJ40_2376 PF04002 RadC-like JAB domain DJ40_2377 PF04127 DNA / pantothenate metabolism flavoprotein DJ40_2377 PF02441 Flavoprotein DJ40_2378 PF00692 dUTPase DJ40_2379 PF00440 Bacterial regulatory proteins, tetR family DJ40_2380 PF00156 Phosphoribosyl transferase domain DJ40_2381 PF01138 3' exoribonuclease family, domain 1 DJ40_2381 PF03725 3' exoribonuclease family, domain 2 DJ40_2382 PF08340 Domain of unknown function (DUF1732) DJ40_2382 PF03755 YicC-like family, N-terminal region DJ40_2383 PF03458 UPF0126 domain DJ40_2384 PF03120 NAD-dependent DNA ligase OB-fold domain DJ40_2384 PF01653 NAD-dependent DNA ligase adenylation domain DJ40_2385 PF00625 Guanylate kinase DJ40_2386 PF01192 RNA polymerase Rpb6 DJ40_2387 PF13291 ACT domain DJ40_2387 PF04607 Region found in RelA / SpoT proteins DJ40_2387 PF02824 TGS domain DJ40_2388 PF12105 SpoU, rRNA methylase, C-terminal DJ40_2388 PF00588 SpoU rRNA Methylase family DJ40_2389 PF17191 RecG wedge domain DJ40_2389 PF00271 Helicase conserved C-terminal domain DJ40_2389 PF00270 DEAD/DEAH box helicase DJ40_239 PF00266 Aminotransferase class-V DJ40_2390 PF03616 Sodium/glutamate symporter DJ40_2391 PF00860 Permease family DJ40_2392 PF05170 AsmA family DJ40_2393 PF09500 Putative thioesterase (yiiD_Cterm) DJ40_2393 PF00583 Acetyltransferase (GNAT) family DJ40_2394 PF02580 D-Tyr-tRNA(Tyr) deacylase DJ40_2395 PF03631 Virulence factor BrkB DJ40_2396 PF13419 Haloacid dehalogenase-like hydrolase DJ40_2398 PF00120 Glutamine synthetase, catalytic domain DJ40_2398 PF03951 Glutamine synthetase, beta-Grasp domain DJ40_2399 PF00989 PAS fold DJ40_2399 PF00512 His Kinase A (phospho-acceptor) domain DJ40_2399 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_24 PF00043 Glutathione S-transferase, C-terminal domain DJ40_24 PF02798 Glutathione S-transferase, N-terminal domain DJ40_2400 PF02954 Bacterial regulatory protein, Fis family DJ40_2400 PF00072 Response regulator receiver domain DJ40_2400 PF00158 Sigma-54 interaction domain DJ40_2401 PF04055 Radical SAM superfamily DJ40_2401 PF06969 HemN C-terminal domain DJ40_2402 PF04220 Der GTPase activator (YihI) DJ40_2403 PF01926 50S ribosome-binding GTPase DJ40_2404 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DJ40_2404 PF00476 DNA polymerase family A DJ40_2404 PF01612 3'-5' exonuclease DJ40_2404 PF01367 5'-3' exonuclease, C-terminal SAM fold DJ40_2405 PF01323 DSBA-like thioredoxin domain DJ40_2406 PF01636 Phosphotransferase enzyme family DJ40_2407 PF06288 Protein of unknown function (DUF1040) DJ40_2408 PF12804 MobA-like NTP transferase domain DJ40_2409 PF03205 Molybdopterin guanine dinucleotide synthesis protein B DJ40_241 PF03692 Putative zinc- or iron-chelating domain DJ40_2410 PF00872 Transposase, Mutator family DJ40_2416 PF07729 FCD domain DJ40_2416 PF00392 Bacterial regulatory proteins, gntR family DJ40_2418 PF07690 Major Facilitator Superfamily DJ40_2419 PF00294 pfkB family carbohydrate kinase DJ40_242 PF01557 Fumarylacetoacetate (FAA) hydrolase family DJ40_2420 PF05025 RbsD / FucU transport protein family DJ40_2421 PF02705 K+ potassium transporter DJ40_2422 PF12592 Protein of unknown function (DUF3763) DJ40_2422 PF07728 AAA domain (dynein-related subfamily) DJ40_2422 PF17868 AAA lid domain DJ40_2423 PF05762 VWA domain containing CoxE-like protein DJ40_2424 PF03590 Aspartate-ammonia ligase DJ40_2425 PF01037 Lrp/AsnC ligand binding domain DJ40_2426 PF00258 Flavodoxin DJ40_2427 PF01134 Glucose inhibited division protein A DJ40_2427 PF13932 GidA associated domain DJ40_2428 PF02527 rRNA small subunit methyltransferase G DJ40_2429 PF03899 ATP synthase I chain DJ40_243 PF13406 Transglycosylase SLT domain DJ40_2430 PF00119 ATP synthase A chain DJ40_2431 PF00137 ATP synthase subunit C DJ40_2432 PF00430 ATP synthase B/B' CF(0) DJ40_2433 PF00213 ATP synthase delta (OSCP) subunit DJ40_2434 PF02874 ATP synthase alpha/beta family, beta-barrel domain DJ40_2434 PF00306 ATP synthase alpha/beta chain, C terminal domain DJ40_2434 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DJ40_2435 PF00231 ATP synthase DJ40_2436 PF02874 ATP synthase alpha/beta family, beta-barrel domain DJ40_2436 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DJ40_2437 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DJ40_2437 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DJ40_2438 PF12804 MobA-like NTP transferase domain DJ40_2438 PF00132 Bacterial transferase hexapeptide (six repeats) DJ40_2439 PF01380 SIS domain DJ40_244 PF05166 YcgL domain DJ40_2441 PF12849 PBP superfamily domain DJ40_2442 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_2443 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_2444 PF00005 ABC transporter DJ40_2445 PF01895 PhoU domain DJ40_2447 PF00497 Bacterial extracellular solute-binding proteins, family 3 DJ40_2448 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_2449 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_2450 PF13419 Haloacid dehalogenase-like hydrolase DJ40_2451 PF00860 Permease family DJ40_2454 PF07055 Enoyl reductase FAD binding domain DJ40_2454 PF12241 Trans-2-enoyl-CoA reductase catalytic region DJ40_2454 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DJ40_2455 PF12631 MnmE helical domain DJ40_2455 PF01926 50S ribosome-binding GTPase DJ40_2455 PF10396 GTP-binding protein TrmE N-terminus DJ40_2456 PF02096 60Kd inner membrane protein DJ40_2456 PF14849 YidC periplasmic domain DJ40_2457 PF01809 Putative membrane protein insertion efficiency factor DJ40_2458 PF00825 Ribonuclease P DJ40_2459 PF00468 Ribosomal protein L34 DJ40_2461 PF00308 Bacterial dnaA protein DJ40_2461 PF11638 DnaA N-terminal domain DJ40_2461 PF08299 Bacterial dnaA protein helix-turn-helix DJ40_2462 PF02768 DNA polymerase III beta subunit, C-terminal domain DJ40_2462 PF02767 DNA polymerase III beta subunit, central domain DJ40_2462 PF00712 DNA polymerase III beta subunit, N-terminal domain DJ40_2463 PF02463 RecF/RecN/SMC N terminal domain DJ40_2464 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_2464 PF00986 DNA gyrase B subunit, carboxyl terminus DJ40_2464 PF18053 DNA gyrase B subunit insert domain DJ40_2464 PF00204 DNA gyrase B DJ40_2464 PF01751 Toprim domain DJ40_2467 PF02423 Ornithine cyclodeaminase/mu-crystallin family DJ40_2468 PF13291 ACT domain DJ40_2468 PF00291 Pyridoxal-phosphate dependent enzyme DJ40_2469 PF07676 WD40-like Beta Propeller Repeat DJ40_2469 PF12566 Protein of unknown function (DUF3748) DJ40_247 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DJ40_2470 PF12566 Protein of unknown function (DUF3748) DJ40_2470 PF07676 WD40-like Beta Propeller Repeat DJ40_2471 PF07119 Protein of unknown function (DUF1375) DJ40_2472 PF00011 Hsp20/alpha crystallin family DJ40_2473 PF00011 Hsp20/alpha crystallin family DJ40_2474 PF06826 Predicted Permease Membrane Region DJ40_2474 PF02080 TrkA-C domain DJ40_2475 PF00155 Aminotransferase class I and II DJ40_2479 PF00128 Alpha amylase, catalytic domain DJ40_248 PF03776 Septum formation topological specificity factor MinE DJ40_2480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DJ40_2480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DJ40_2482 PF00691 OmpA family DJ40_2482 PF13488 Glycine zipper DJ40_2484 PF03352 Methyladenine glycosylase DJ40_2485 PF02091 Glycyl-tRNA synthetase alpha subunit DJ40_2486 PF02092 Glycyl-tRNA synthetase beta subunit DJ40_2486 PF05746 DALR anticodon binding domain DJ40_2487 PF11254 Protein of unknown function (DUF3053) DJ40_2488 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DJ40_2488 PF02378 Phosphotransferase system, EIIC DJ40_2488 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DJ40_2489 PF08125 Mannitol dehydrogenase C-terminal domain DJ40_2489 PF01232 Mannitol dehydrogenase Rossmann domain DJ40_249 PF01612 3'-5' exonuclease DJ40_249 PF00570 HRDC domain DJ40_2490 PF05068 Mannitol repressor DJ40_2492 PF10928 Protein of unknown function (DUF2810) DJ40_2495 PF00672 HAMP domain DJ40_2495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DJ40_2495 PF02203 Tar ligand binding domain homologue DJ40_2496 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DJ40_2496 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DJ40_2497 PF02634 FdhD/NarQ family DJ40_2498 PF01568 Molydopterin dinucleotide binding domain DJ40_2498 PF00384 Molybdopterin oxidoreductase DJ40_2498 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DJ40_2499 PF01568 Molydopterin dinucleotide binding domain DJ40_2499 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DJ40_2499 PF00384 Molybdopterin oxidoreductase DJ40_25 PF11656 YjbD family (DUF3811) DJ40_250 PF13193 AMP-binding enzyme C-terminal domain DJ40_250 PF00501 AMP-binding enzyme DJ40_2500 PF13247 4Fe-4S dicluster domain DJ40_2500 PF09163 Formate dehydrogenase N, transmembrane DJ40_2501 PF01292 Prokaryotic cytochrome b561 DJ40_2502 PF04216 Protein involved in formate dehydrogenase formation DJ40_2503 PF12390 Selenocysteine synthase N terminal DJ40_2503 PF03841 L-seryl-tRNA selenium transferase DJ40_2504 PF09107 Elongation factor SelB, winged helix DJ40_2504 PF00009 Elongation factor Tu GTP binding domain DJ40_2504 PF03144 Elongation factor Tu domain 2 DJ40_2504 PF09106 Elongation factor SelB, winged helix DJ40_2508 PF07690 Major Facilitator Superfamily DJ40_2509 PF01757 Acyltransferase family DJ40_251 PF03843 Outer membrane lipoprotein Slp family DJ40_2510 PF00419 Fimbrial protein DJ40_2511 PF00577 Outer membrane usher protein DJ40_2511 PF13953 PapC C-terminal domain DJ40_2511 PF13954 PapC N-terminal domain DJ40_2512 PF02753 Pili assembly chaperone PapD, C-terminal domain DJ40_2512 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DJ40_2514 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DJ40_2514 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DJ40_2516 PF13407 Periplasmic binding protein domain DJ40_2517 PF00005 ABC transporter DJ40_2518 PF02653 Branched-chain amino acid transport system / permease component DJ40_2519 PF12833 Helix-turn-helix domain DJ40_252 PF00814 Glycoprotease family DJ40_2521 PF13356 Arm DNA-binding domain DJ40_2521 PF14659 Phage integrase, N-terminal SAM-like domain DJ40_2521 PF00589 Phage integrase family DJ40_2523 PF04606 Ogr/Delta-like zinc finger DJ40_2525 PF13737 Transposase DDE domain DJ40_2526 PF13737 Transposase DDE domain DJ40_253 PF13307 Helicase C-terminal domain DJ40_253 PF04851 Type III restriction enzyme, res subunit DJ40_2530 PF00005 ABC transporter DJ40_2532 PF01032 FecCD transport family DJ40_2533 PF01032 FecCD transport family DJ40_2534 PF01497 Periplasmic binding protein DJ40_2537 PF00156 Phosphoribosyl transferase domain DJ40_2538 PF00291 Pyridoxal-phosphate dependent enzyme DJ40_2539 PF01175 Urocanase Rossmann-like domain DJ40_2539 PF17391 Urocanase N-terminal domain DJ40_2539 PF17392 Urocanase C-terminal domain DJ40_254 PF01042 Endoribonuclease L-PSP DJ40_2540 PF00221 Aromatic amino acid lyase DJ40_2541 PF00324 Amino acid permease DJ40_2542 PF12146 Serine aminopeptidase, S33 DJ40_2543 PF08019 Phosphoethanolamine transferase EptA/EptB DJ40_2543 PF00884 Sulfatase DJ40_2544 PF00196 Bacterial regulatory proteins, luxR family DJ40_2544 PF00072 Response regulator receiver domain DJ40_2545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_2545 PF07730 Histidine kinase DJ40_2545 PF05231 MASE1 DJ40_2546 PF07690 Major Facilitator Superfamily DJ40_2549 PF04829 Pre-toxin domain with VENN motif DJ40_2549 PF05594 Haemagluttinin repeat DJ40_2549 PF13332 Hemagglutinin repeat DJ40_2549 PF05860 haemagglutination activity domain DJ40_255 PF00893 Small Multidrug Resistance protein DJ40_2550 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DJ40_2550 PF17287 POTRA domain DJ40_2550 PF08479 POTRA domain, ShlB-type DJ40_2552 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DJ40_2553 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_2554 PF12911 N-terminal TM domain of oligopeptide transport permease C DJ40_2554 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_2555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DJ40_2555 PF00005 ABC transporter DJ40_2556 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DJ40_2556 PF00005 ABC transporter DJ40_2557 PF01270 Glycosyl hydrolases family 8 DJ40_2558 PF00563 EAL domain DJ40_2558 PF17154 Gammaproteobacterial periplasmic sensor domain DJ40_2558 PF00990 Diguanylate cyclase, GGDEF domain DJ40_2558 PF00672 HAMP domain DJ40_2559 PF06178 Oligogalacturonate-specific porin protein (KdgM) DJ40_256 PF00893 Small Multidrug Resistance protein DJ40_2560 PF06917 Periplasmic pectate lyase DJ40_2562 PF00375 Sodium:dicarboxylate symporter family DJ40_2563 PF05193 Peptidase M16 inactive domain DJ40_2563 PF00675 Insulinase (Peptidase family M16) DJ40_2564 PF00294 pfkB family carbohydrate kinase DJ40_2565 PF01361 Tautomerase enzyme DJ40_2566 PF00563 EAL domain DJ40_2567 PF05170 AsmA family DJ40_2568 PF02611 CDP-diacylglycerol pyrophosphatase DJ40_2569 PF03631 Virulence factor BrkB DJ40_257 PF01081 KDPG and KHG aldolase DJ40_2574 PF02595 Glycerate kinase family DJ40_2575 PF02447 GntP family permease DJ40_2576 PF17853 GGDEF-like domain DJ40_2576 PF13556 PucR C-terminal helix-turn-helix domain DJ40_2576 PF05651 Putative sugar diacid recognition DJ40_2577 PF07992 Pyridine nucleotide-disulphide oxidoreductase DJ40_2577 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DJ40_2578 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DJ40_2579 PF01432 Peptidase family M3 DJ40_2580 PF04445 Putative SAM-dependent methyltransferase DJ40_2581 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) DJ40_2581 PF08548 Peptidase M10 serralysin C terminal DJ40_2581 PF00413 Matrixin DJ40_2582 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DJ40_2582 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DJ40_2583 PF00582 Universal stress protein family DJ40_2584 PF10625 Universal stress protein B (UspB) DJ40_2585 PF01384 Phosphate transporter family DJ40_2587 PF00072 Response regulator receiver domain DJ40_2587 PF13188 PAS domain DJ40_2587 PF08448 PAS fold DJ40_2587 PF00512 His Kinase A (phospho-acceptor) domain DJ40_2587 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_2588 PF00005 ABC transporter DJ40_2589 PF02653 Branched-chain amino acid transport system / permease component DJ40_259 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DJ40_259 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DJ40_2590 PF13407 Periplasmic binding protein domain DJ40_2592 PF01116 Fructose-bisphosphate aldolase class-II DJ40_2594 PF00486 Transcriptional regulatory protein, C terminal DJ40_2594 PF00072 Response regulator receiver domain DJ40_2595 PF17954 Quercetinase C-terminal cupin domain DJ40_2595 PF02678 Pirin DJ40_2596 PF00356 Bacterial regulatory proteins, lacI family DJ40_2596 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DJ40_2597 PF02447 GntP family permease DJ40_2598 PF01202 Shikimate kinase DJ40_26 PF04893 Yip1 domain DJ40_260 PF01380 SIS domain DJ40_260 PF01418 Helix-turn-helix domain, rpiR family DJ40_2600 PF05638 Type VI secretion system effector, Hcp DJ40_2604 PF01914 MarC family integral membrane protein DJ40_2605 PF02774 Semialdehyde dehydrogenase, dimerisation domain DJ40_2605 PF01118 Semialdehyde dehydrogenase, NAD binding domain DJ40_2606 PF02369 Bacterial Ig-like domain (group 1) DJ40_2606 PF11924 Inverse autotransporter, beta-domain DJ40_2606 PF09134 Invasin, domain 3 DJ40_2606 PF07979 Intimin C-type lectin domain DJ40_2607 PF06580 Histidine kinase DJ40_2607 PF07694 5TMR of 5TMR-LYT DJ40_2608 PF00128 Alpha amylase, catalytic domain DJ40_2608 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DJ40_2608 PF02806 Alpha amylase, C-terminal all-beta domain DJ40_2609 PF00128 Alpha amylase, catalytic domain DJ40_2609 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DJ40_2609 PF18390 Glycogen debranching enzyme C-terminal domain DJ40_261 PF02887 Pyruvate kinase, alpha/beta domain DJ40_261 PF00224 Pyruvate kinase, barrel domain DJ40_2610 PF00483 Nucleotidyl transferase DJ40_2611 PF08323 Starch synthase catalytic domain DJ40_2611 PF00534 Glycosyl transferases group 1 DJ40_2612 PF00343 Carbohydrate phosphorylase DJ40_2613 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DJ40_2613 PF01266 FAD dependent oxidoreductase DJ40_2616 PF08220 DeoR-like helix-turn-helix domain DJ40_2616 PF00455 DeoR C terminal sensor domain DJ40_2617 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease DJ40_2617 PF01694 Rhomboid family DJ40_2618 PF00581 Rhodanese-like domain DJ40_2619 PF00196 Bacterial regulatory proteins, luxR family DJ40_2619 PF17874 MalT-like TPR region DJ40_262 PF03279 Bacterial lipid A biosynthesis acyltransferase DJ40_2620 PF00343 Carbohydrate phosphorylase DJ40_2621 PF02446 4-alpha-glucanotransferase DJ40_2622 PF01106 NifU-like domain DJ40_2622 PF01521 Iron-sulphur cluster biosynthesis DJ40_2623 PF00156 Phosphoribosyl transferase domain DJ40_2624 PF00561 alpha/beta hydrolase fold DJ40_2625 PF07338 Protein of unknown function (DUF1471) DJ40_2626 PF09012 FeoC like transcriptional regulator DJ40_2627 PF17910 FeoB cytosolic helical domain DJ40_2627 PF07664 Ferrous iron transport protein B C terminus DJ40_2627 PF02421 Ferrous iron transport protein B DJ40_2627 PF07670 Nucleoside recognition DJ40_2628 PF04023 FeoA domain DJ40_2629 PF00575 S1 RNA binding domain DJ40_2629 PF17674 HHH domain DJ40_2629 PF09371 Tex-like protein N-terminal domain DJ40_2629 PF16921 Tex protein YqgF-like domain DJ40_263 PF01551 Peptidase family M23 DJ40_263 PF01476 LysM domain DJ40_263 PF08525 Opacity-associated protein A N-terminal motif DJ40_2630 PF03449 Transcription elongation factor, N-terminal DJ40_2630 PF01272 Transcription elongation factor, GreA/GreB, C-term DJ40_2631 PF00486 Transcriptional regulatory protein, C terminal DJ40_2631 PF00072 Response regulator receiver domain DJ40_2632 PF00672 HAMP domain DJ40_2632 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_2632 PF00512 His Kinase A (phospho-acceptor) domain DJ40_2633 PF01293 Phosphoenolpyruvate carboxykinase DJ40_2634 PF01430 Hsp33 protein DJ40_2635 PF01479 S4 domain DJ40_2636 PF13419 Haloacid dehalogenase-like hydrolase DJ40_2637 PF07095 Intracellular growth attenuator protein IgaA DJ40_2639 PF00293 NUDIX domain DJ40_264 PF01297 Zinc-uptake complex component A periplasmic DJ40_2640 PF17092 Penicillin-binding protein OB-like domain DJ40_2640 PF00905 Penicillin binding protein transpeptidase domain DJ40_2640 PF00912 Transglycosylase DJ40_2645 PF03958 Bacterial type II/III secretion system short domain DJ40_2645 PF00263 Bacterial type II and III secretion system protein DJ40_2646 PF01202 Shikimate kinase DJ40_2647 PF01761 3-dehydroquinate synthase DJ40_2648 PF05036 Sporulation related domain DJ40_2649 PF02086 D12 class N6 adenine-specific DNA methyltransferase DJ40_265 PF00005 ABC transporter DJ40_2650 PF00834 Ribulose-phosphate 3 epimerase family DJ40_2651 PF13419 Haloacid dehalogenase-like hydrolase DJ40_2652 PF00579 tRNA synthetases class I (W and Y) DJ40_2653 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DJ40_2653 PF10414 Sirohaem synthase dimerisation region DJ40_2653 PF14824 Sirohaem biosynthesis protein central DJ40_2654 PF01226 Formate/nitrite transporter DJ40_2655 PF13806 Rieske-like [2Fe-2S] domain DJ40_2656 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DJ40_2656 PF04324 BFD-like [2Fe-2S] binding domain DJ40_2656 PF18267 Rubredoxin NAD+ reductase C-terminal domain DJ40_2656 PF07992 Pyridine nucleotide-disulphide oxidoreductase DJ40_2656 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DJ40_2657 PF07969 Amidohydrolase family DJ40_2658 PF07690 Major Facilitator Superfamily DJ40_266 PF00950 ABC 3 transport family DJ40_2660 PF00356 Bacterial regulatory proteins, lacI family DJ40_2661 PF02056 Family 4 glycosyl hydrolase DJ40_2661 PF11975 Family 4 glycosyl hydrolase C-terminal domain DJ40_2662 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DJ40_2663 PF05872 Bacterial protein of unknown function (DUF853) DJ40_2664 PF00117 Glutamine amidotransferase class-I DJ40_2665 PF00202 Aminotransferase class-III DJ40_2666 PF12805 FUSC-like inner membrane protein yccS DJ40_2667 PF00027 Cyclic nucleotide-binding domain DJ40_2667 PF13545 Crp-like helix-turn-helix domain DJ40_2668 PF02566 OsmC-like protein DJ40_267 PF05491 RuvB C-terminal winged helix domain DJ40_267 PF17864 RuvB AAA lid domain DJ40_267 PF05496 Holliday junction DNA helicase RuvB P-loop domain DJ40_2670 PF00485 Phosphoribulokinase / Uridine kinase family DJ40_2671 PF06794 Uncharacterised protein family (UPF0270) DJ40_2672 PF00561 alpha/beta hydrolase fold DJ40_2673 PF01810 LysE type translocator DJ40_2674 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DJ40_2675 PF00005 ABC transporter DJ40_2676 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_2677 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DJ40_268 PF01330 RuvA N terminal domain DJ40_268 PF07499 RuvA, C-terminal domain DJ40_2680 PF00535 Glycosyl transferase family 2 DJ40_2681 PF12848 ABC transporter DJ40_2681 PF00005 ABC transporter DJ40_2682 PF02525 Flavodoxin-like fold DJ40_2683 PF00999 Sodium/hydrogen exchanger family DJ40_2683 PF02254 TrkA-N domain DJ40_2684 PF09526 Probable metal-binding protein (DUF2387) DJ40_2685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DJ40_2686 PF04102 SlyX DJ40_2687 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DJ40_2687 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DJ40_2688 PF08348 YheO-like PAS domain DJ40_2688 PF13309 HTH domain DJ40_2689 PF02635 DsrE/DsrF-like family DJ40_269 PF02075 Crossover junction endodeoxyribonuclease RuvC DJ40_2690 PF02635 DsrE/DsrF-like family DJ40_2691 PF04077 DsrH like protein DJ40_2692 PF00164 Ribosomal protein S12/S23 DJ40_2693 PF00177 Ribosomal protein S7p/S5e DJ40_2694 PF03144 Elongation factor Tu domain 2 DJ40_2694 PF00009 Elongation factor Tu GTP binding domain DJ40_2694 PF00679 Elongation factor G C-terminus DJ40_2694 PF14492 Elongation Factor G, domain II DJ40_2694 PF03764 Elongation factor G, domain IV DJ40_2695 PF03144 Elongation factor Tu domain 2 DJ40_2695 PF00009 Elongation factor Tu GTP binding domain DJ40_2695 PF03143 Elongation factor Tu C-terminal domain DJ40_2696 PF04324 BFD-like [2Fe-2S] binding domain DJ40_2697 PF00210 Ferritin-like domain DJ40_2698 PF00338 Ribosomal protein S10p/S20e DJ40_2699 PF00297 Ribosomal protein L3 DJ40_27 PF00854 POT family DJ40_270 PF01709 Transcriptional regulator DJ40_2700 PF00573 Ribosomal protein L4/L1 family DJ40_2701 PF00276 Ribosomal protein L23 DJ40_2702 PF03947 Ribosomal Proteins L2, C-terminal domain DJ40_2702 PF00181 Ribosomal Proteins L2, RNA binding domain DJ40_2703 PF00203 Ribosomal protein S19 DJ40_2704 PF00237 Ribosomal protein L22p/L17e DJ40_2705 PF07650 KH domain DJ40_2705 PF00189 Ribosomal protein S3, C-terminal domain DJ40_2706 PF00252 Ribosomal protein L16p/L10e DJ40_2707 PF00831 Ribosomal L29 protein DJ40_2708 PF00366 Ribosomal protein S17 DJ40_2709 PF00238 Ribosomal protein L14p/L23e DJ40_271 PF00293 NUDIX domain DJ40_2710 PF00467 KOW motif DJ40_2710 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DJ40_2711 PF00673 ribosomal L5P family C-terminus DJ40_2711 PF00281 Ribosomal protein L5 DJ40_2712 PF00253 Ribosomal protein S14p/S29e DJ40_2713 PF00410 Ribosomal protein S8 DJ40_2714 PF00347 Ribosomal protein L6 DJ40_2715 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DJ40_2716 PF03719 Ribosomal protein S5, C-terminal domain DJ40_2716 PF00333 Ribosomal protein S5, N-terminal domain DJ40_2717 PF00327 Ribosomal protein L30p/L7e DJ40_2718 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DJ40_2719 PF00344 SecY translocase DJ40_272 PF00152 tRNA synthetases class II (D, K and N) DJ40_272 PF01336 OB-fold nucleic acid binding domain DJ40_272 PF02938 GAD domain DJ40_2720 PF00444 Ribosomal protein L36 DJ40_2721 PF00416 Ribosomal protein S13/S18 DJ40_2722 PF00411 Ribosomal protein S11 DJ40_2723 PF00163 Ribosomal protein S4/S9 N-terminal domain DJ40_2723 PF01479 S4 domain DJ40_2724 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DJ40_2724 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DJ40_2724 PF01000 RNA polymerase Rpb3/RpoA insert domain DJ40_2725 PF01196 Ribosomal protein L17 DJ40_2726 PF13411 MerR HTH family regulatory protein DJ40_2727 PF03889 Alternative ribosome-rescue factor A DJ40_2728 PF01741 Large-conductance mechanosensitive channel, MscL DJ40_2729 PF02080 TrkA-C domain DJ40_2729 PF02254 TrkA-N domain DJ40_273 PF01904 Protein of unknown function DUF72 DJ40_2730 PF01189 16S rRNA methyltransferase RsmB/F DJ40_2730 PF01029 NusB family DJ40_2731 PF00551 Formyl transferase DJ40_2731 PF02911 Formyl transferase, C-terminal domain DJ40_2732 PF01327 Polypeptide deformylase DJ40_2735 PF04361 Protein of unknown function (DUF494) DJ40_2736 PF01396 Topoisomerase DNA binding C4 zinc finger DJ40_2737 PF01300 Telomere recombination DJ40_2738 PF01488 Shikimate / quinate 5-dehydrogenase DJ40_2738 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DJ40_2738 PF08501 Shikimate dehydrogenase substrate binding domain DJ40_2739 PF00132 Bacterial transferase hexapeptide (six repeats) DJ40_274 PF01124 MAPEG family DJ40_2747 PF00872 Transposase, Mutator family DJ40_2749 PF04204 Homoserine O-succinyltransferase DJ40_275 PF13649 Methyltransferase domain DJ40_2750 PF01274 Malate synthase DJ40_2751 PF00463 Isocitrate lyase family DJ40_2752 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) DJ40_2753 PF09339 IclR helix-turn-helix domain DJ40_2753 PF01614 Bacterial transcriptional regulator DJ40_2754 PF02607 B12 binding domain DJ40_2754 PF02965 Vitamin B12 dependent methionine synthase, activation domain DJ40_2754 PF02310 B12 binding domain DJ40_2754 PF00809 Pterin binding enzyme DJ40_2754 PF02574 Homocysteine S-methyltransferase DJ40_2755 PF13332 Hemagglutinin repeat DJ40_2755 PF05860 haemagglutination activity domain DJ40_2756 PF01842 ACT domain DJ40_2756 PF00696 Amino acid kinase family DJ40_2757 PF00342 Phosphoglucose isomerase DJ40_2758 PF06146 Phosphate-starvation-inducible E DJ40_2759 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_276 PF08003 Protein of unknown function (DUF1698) DJ40_2760 PF14785 Maltose transport system permease protein MalF P2 domain DJ40_2760 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_2761 PF01547 Bacterial extracellular solute-binding protein DJ40_2763 PF00005 ABC transporter DJ40_2763 PF17912 MalK OB fold domain DJ40_2764 PF02264 LamB porin DJ40_2765 PF07148 Maltose operon periplasmic protein precursor (MalM) DJ40_2767 PF05638 Type VI secretion system effector, Hcp DJ40_277 PF03932 CutC family DJ40_2777 PF07724 AAA domain (Cdc48 subfamily) DJ40_2777 PF17871 AAA lid domain DJ40_2777 PF10431 C-terminal, D2-small domain, of ClpB protein DJ40_2777 PF00004 ATPase family associated with various cellular activities (AAA) DJ40_278 PF06185 YecM protein DJ40_2783 PF04717 Type VI secretion system, phage-baseplate injector DJ40_2785 PF05593 RHS Repeat DJ40_2785 PF03527 RHS protein DJ40_2785 PF14220 Domain of unknown function (DUF4329) DJ40_279 PF05746 DALR anticodon binding domain DJ40_279 PF00750 tRNA synthetases class I (R) DJ40_279 PF03485 Arginyl tRNA synthetase N terminal domain DJ40_2791 PF04717 Type VI secretion system, phage-baseplate injector DJ40_2793 PF05593 RHS Repeat DJ40_2793 PF03527 RHS protein DJ40_2793 PF14220 Domain of unknown function (DUF4329) DJ40_2799 PF03527 RHS protein DJ40_2799 PF05593 RHS Repeat DJ40_2802 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DJ40_2802 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DJ40_2803 PF02311 AraC-like ligand binding domain DJ40_2803 PF12833 Helix-turn-helix domain DJ40_2804 PF05025 RbsD / FucU transport protein family DJ40_2805 PF00294 pfkB family carbohydrate kinase DJ40_2807 PF03358 NADPH-dependent FMN reductase DJ40_2808 PF09084 NMT1/THI5 like DJ40_2809 PF00296 Luciferase-like monooxygenase DJ40_2810 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_2811 PF00005 ABC transporter DJ40_2812 PF04221 RelB antitoxin DJ40_2813 PF00860 Permease family DJ40_2814 PF00999 Sodium/hydrogen exchanger family DJ40_2816 PF03279 Bacterial lipid A biosynthesis acyltransferase DJ40_2818 PF00005 ABC transporter DJ40_2819 PF02653 Branched-chain amino acid transport system / permease component DJ40_282 PF08479 POTRA domain, ShlB-type DJ40_282 PF17287 POTRA domain DJ40_282 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DJ40_2821 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DJ40_2821 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DJ40_2822 PF01380 SIS domain DJ40_2822 PF00571 CBS domain DJ40_2823 PF02798 Glutathione S-transferase, N-terminal domain DJ40_2826 PF00313 'Cold-shock' DNA-binding domain DJ40_2827 PF00313 'Cold-shock' DNA-binding domain DJ40_2828 PF00313 'Cold-shock' DNA-binding domain DJ40_2829 PF05433 Glycine zipper 2TM domain DJ40_283 PF03023 Lipid II flippase MurJ DJ40_2830 PF00753 Metallo-beta-lactamase superfamily DJ40_2831 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DJ40_2831 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DJ40_2832 PF02627 Carboxymuconolactone decarboxylase family DJ40_2833 PF07690 Major Facilitator Superfamily DJ40_2836 PF02954 Bacterial regulatory protein, Fis family DJ40_2837 PF01207 Dihydrouridine synthase (Dus) DJ40_2839 PF00474 Sodium:solute symporter family DJ40_2840 PF06196 Protein of unknown function (DUF997) DJ40_2842 PF02785 Biotin carboxylase C-terminal domain DJ40_2842 PF00289 Biotin carboxylase, N-terminal domain DJ40_2842 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DJ40_2843 PF00364 Biotin-requiring enzyme DJ40_2844 PF01220 Dehydroquinase class II DJ40_2845 PF01794 Ferric reductase like transmembrane component DJ40_2846 PF00174 Oxidoreductase molybdopterin binding domain DJ40_2847 PF08240 Alcohol dehydrogenase GroES-like domain DJ40_2847 PF00107 Zinc-binding dehydrogenase DJ40_2848 PF00563 EAL domain DJ40_2848 PF00990 Diguanylate cyclase, GGDEF domain DJ40_2848 PF17157 Gammaproteobacterial periplasmic sensor domain DJ40_2850 PF04085 rod shape-determining protein MreC DJ40_2851 PF04093 rod shape-determining protein MreD DJ40_2852 PF02545 Maf-like protein DJ40_2853 PF00575 S1 RNA binding domain DJ40_2853 PF10150 Ribonuclease E/G family DJ40_2856 PF00795 Carbon-nitrogen hydrolase DJ40_2857 PF01523 Putative modulator of DNA gyrase DJ40_2858 PF18807 Tripartite Tc toxins repeat DJ40_2858 PF05785 Rho-activating domain of cytotoxic necrotizing factor DJ40_2859 PF18807 Tripartite Tc toxins repeat DJ40_2859 PF05785 Rho-activating domain of cytotoxic necrotizing factor DJ40_286 PF13302 Acetyltransferase (GNAT) domain DJ40_2863 PF12255 Insecticide toxin TcdB middle/C-terminal region DJ40_2863 PF12256 Insecticide toxin TcdB middle/N-terminal region DJ40_2863 PF03534 Salmonella virulence plasmid 65kDa B protein DJ40_2864 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain DJ40_2864 PF18413 Neuraminidase-like domain DJ40_2866 PF03466 LysR substrate binding domain DJ40_2866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_2867 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_2867 PF03466 LysR substrate binding domain DJ40_2868 PF07869 Protein of unknown function (DUF1656) DJ40_2869 PF13533 Biotin-lipoyl like DJ40_287 PF07690 Major Facilitator Superfamily DJ40_2870 PF04632 Fusaric acid resistance protein family DJ40_2871 PF00171 Aldehyde dehydrogenase family DJ40_2872 PF00171 Aldehyde dehydrogenase family DJ40_2875 PF01337 Barstar (barnase inhibitor) DJ40_2876 PF04751 Protein of unknown function (DUF615) DJ40_2877 PF01523 Putative modulator of DNA gyrase DJ40_2879 PF07361 Cytochrome b562 DJ40_288 PF07273 Protein of unknown function (DUF1439) DJ40_2880 PF14760 Rnk N-terminus DJ40_2880 PF01272 Transcription elongation factor, GreA/GreB, C-term DJ40_2881 PF11941 Domain of unknown function (DUF3459) DJ40_2881 PF00128 Alpha amylase, catalytic domain DJ40_2882 PF00367 phosphotransferase system, EIIB DJ40_2882 PF02378 Phosphotransferase system, EIIC DJ40_2883 PF00356 Bacterial regulatory proteins, lacI family DJ40_2885 PF01042 Endoribonuclease L-PSP DJ40_2886 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain DJ40_2886 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain DJ40_2887 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DJ40_2887 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DJ40_2888 PF00381 PTS HPr component phosphorylation site DJ40_2889 PF03668 P-loop ATPase protein family DJ40_289 PF02613 Nitrate reductase delta subunit DJ40_2890 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DJ40_2891 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DJ40_2892 PF04552 Sigma-54, DNA binding domain DJ40_2892 PF00309 Sigma-54 factor, Activator interacting domain (AID) DJ40_2892 PF04963 Sigma-54 factor, core binding domain DJ40_2893 PF12399 Branched-chain amino acid ATP-binding cassette transporter DJ40_2893 PF00005 ABC transporter DJ40_2894 PF03968 OstA-like protein DJ40_2895 PF06835 Lipopolysaccharide-assembly, LptC-related DJ40_2897 PF01380 SIS domain DJ40_2897 PF00571 CBS domain DJ40_2898 PF01699 Sodium/calcium exchanger protein DJ40_2899 PF00005 ABC transporter DJ40_290 PF02811 PHP domain DJ40_2900 PF02405 Permease MlaE DJ40_2901 PF02470 MlaD protein DJ40_2902 PF05494 MlaC protein DJ40_2903 PF13466 STAS domain DJ40_2904 PF01722 BolA-like protein DJ40_2905 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DJ40_2906 PF13180 PDZ domain DJ40_2907 PF13180 PDZ domain DJ40_2907 PF00595 PDZ domain DJ40_2908 PF06295 Protein of unknown function (DUF1043) DJ40_2910 PF03969 AFG1-like ATPase DJ40_2911 PF00572 Ribosomal protein L13 DJ40_2912 PF00380 Ribosomal protein S9/S16 DJ40_2913 PF00043 Glutathione S-transferase, C-terminal domain DJ40_2913 PF02798 Glutathione S-transferase, N-terminal domain DJ40_2914 PF04386 Stringent starvation protein B DJ40_2916 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DJ40_2916 PF07992 Pyridine nucleotide-disulphide oxidoreductase DJ40_2917 PF01493 GXGXG motif DJ40_2917 PF01645 Conserved region in glutamate synthase DJ40_2917 PF04898 Glutamate synthase central domain DJ40_2917 PF00310 Glutamine amidotransferases class-II DJ40_2919 PF04055 Radical SAM superfamily DJ40_2919 PF16199 Radical_SAM C-terminal domain DJ40_292 PF00480 ROK family DJ40_292 PF01325 Iron dependent repressor, N-terminal DNA binding domain DJ40_2921 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_2921 PF00512 His Kinase A (phospho-acceptor) domain DJ40_2921 PF18415 Histidine kinase receptor ArcB trans-membrane domain DJ40_2921 PF01627 Hpt domain DJ40_2921 PF00989 PAS fold DJ40_2921 PF00072 Response regulator receiver domain DJ40_2923 PF00912 Transglycosylase DJ40_2924 PF04972 BON domain DJ40_2925 PF13580 SIS domain DJ40_2926 PF02021 Uncharacterised protein family UPF0102 DJ40_2927 PF04348 LppC putative lipoprotein DJ40_2928 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DJ40_2929 PF17954 Quercetinase C-terminal cupin domain DJ40_2929 PF02678 Pirin DJ40_293 PF03009 Glycerophosphoryl diester phosphodiesterase family DJ40_2930 PF03466 LysR substrate binding domain DJ40_2930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_2931 PF13409 Glutathione S-transferase, N-terminal domain DJ40_2932 PF07681 DoxX DJ40_2934 PF07332 Putative Actinobacterial Holin-X, holin superfamily III DJ40_2935 PF05957 Bacterial protein of unknown function (DUF883) DJ40_2937 PF13721 SecD export protein N-terminal TM region DJ40_2938 PF09335 SNARE associated Golgi protein DJ40_294 PF00005 ABC transporter DJ40_294 PF08402 TOBE domain DJ40_2940 PF07729 FCD domain DJ40_2940 PF00392 Bacterial regulatory proteins, gntR family DJ40_2941 PF07690 Major Facilitator Superfamily DJ40_2942 PF02614 Glucuronate isomerase DJ40_2943 PF08125 Mannitol dehydrogenase C-terminal domain DJ40_2943 PF01232 Mannitol dehydrogenase Rossmann domain DJ40_2944 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DJ40_2944 PF08666 SAF domain DJ40_2945 PF10688 Bacterial inner membrane protein DJ40_2946 PF00375 Sodium:dicarboxylate symporter family DJ40_2947 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DJ40_2948 PF01863 Protein of unknown function DUF45 DJ40_2949 PF03797 Autotransporter beta-domain DJ40_295 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_2950 PF05175 Methyltransferase small domain DJ40_2951 PF07992 Pyridine nucleotide-disulphide oxidoreductase DJ40_2951 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DJ40_2952 PF03729 Short repeat of unknown function (DUF308) DJ40_2955 PF00092 von Willebrand factor type A domain DJ40_2957 PF02342 TerD domain DJ40_2958 PF00092 von Willebrand factor type A domain DJ40_2959 PF08479 POTRA domain, ShlB-type DJ40_2959 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DJ40_2959 PF17287 POTRA domain DJ40_296 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_2960 PF13332 Hemagglutinin repeat DJ40_2960 PF05860 haemagglutination activity domain DJ40_2960 PF04829 Pre-toxin domain with VENN motif DJ40_2960 PF13018 Extended Signal Peptide of Type V secretion system DJ40_2961 PF04829 Pre-toxin domain with VENN motif DJ40_2961 PF05860 haemagglutination activity domain DJ40_2961 PF13332 Hemagglutinin repeat DJ40_2961 PF13018 Extended Signal Peptide of Type V secretion system DJ40_2963 PF04829 Pre-toxin domain with VENN motif DJ40_2963 PF13332 Hemagglutinin repeat DJ40_2969 PF13332 Hemagglutinin repeat DJ40_2969 PF05860 haemagglutination activity domain DJ40_2969 PF13018 Extended Signal Peptide of Type V secretion system DJ40_2969 PF04829 Pre-toxin domain with VENN motif DJ40_2971 PF13332 Hemagglutinin repeat DJ40_2971 PF04829 Pre-toxin domain with VENN motif DJ40_2971 PF13018 Extended Signal Peptide of Type V secretion system DJ40_2971 PF05860 haemagglutination activity domain DJ40_2975 PF17912 MalK OB fold domain DJ40_2975 PF03459 TOBE domain DJ40_2975 PF00005 ABC transporter DJ40_2976 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain DJ40_2977 PF00356 Bacterial regulatory proteins, lacI family DJ40_2978 PF13416 Bacterial extracellular solute-binding protein DJ40_2979 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_2980 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_2982 PF14310 Fibronectin type III-like domain DJ40_2982 PF01915 Glycosyl hydrolase family 3 C-terminal domain DJ40_2982 PF00933 Glycosyl hydrolase family 3 N terminal domain DJ40_2984 PF04632 Fusaric acid resistance protein family DJ40_2985 PF00529 HlyD membrane-fusion protein of T1SS DJ40_2985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DJ40_299 PF03009 Glycerophosphoryl diester phosphodiesterase family DJ40_2992 PF01042 Endoribonuclease L-PSP DJ40_2996 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_2996 PF03466 LysR substrate binding domain DJ40_3 PF00356 Bacterial regulatory proteins, lacI family DJ40_30 PF00005 ABC transporter DJ40_3006 PF03979 Sigma-70 factor, region 1.1 DJ40_3006 PF00140 Sigma-70 factor, region 1.2 DJ40_3006 PF04546 Sigma-70, non-essential region DJ40_3006 PF04545 Sigma-70, region 4 DJ40_3006 PF04539 Sigma-70 region 3 DJ40_3006 PF04542 Sigma-70 region 2 DJ40_3007 PF01807 CHC2 zinc finger DJ40_3007 PF10410 DnaB-helicase binding domain of primase DJ40_3007 PF08275 DNA primase catalytic core, N-terminal domain DJ40_3007 PF08278 DNA primase DnaG DnaB-binding DJ40_3008 PF01165 Ribosomal protein S21 DJ40_3009 PF00814 Glycoprotease family DJ40_301 PF01740 STAS domain DJ40_301 PF00916 Sulfate permease family DJ40_3010 PF02660 Glycerol-3-phosphate acyltransferase DJ40_3011 PF02152 Dihydroneopterin aldolase DJ40_3012 PF02673 Bacitracin resistance protein BacA DJ40_3013 PF01743 Poly A polymerase head domain DJ40_3013 PF12627 Probable RNA and SrmB- binding site of polymerase A DJ40_3013 PF01966 HD domain DJ40_3014 PF08239 Bacterial SH3 domain DJ40_3015 PF01928 CYTH domain DJ40_3016 PF08335 GlnD PII-uridylyltransferase DJ40_3016 PF03710 Glutamate-ammonia ligase adenylyltransferase DJ40_3017 PF01467 Cytidylyltransferase-like DJ40_3017 PF00294 pfkB family carbohydrate kinase DJ40_3018 PF13520 Amino acid permease DJ40_3019 PF04380 Membrane fusogenic activity DJ40_302 PF00793 DAHP synthetase I family DJ40_3020 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DJ40_3021 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DJ40_3022 PF03738 Glutathionylspermidine synthase preATP-grasp DJ40_3023 PF06693 Protein of unknown function (DUF1190) DJ40_3025 PF02321 Outer membrane efflux protein DJ40_3026 PF00293 NUDIX domain DJ40_3027 PF06853 Protein of unknown function (DUF1249) DJ40_3028 PF00149 Calcineurin-like phosphoesterase DJ40_3029 PF05728 Uncharacterised protein family (UPF0227) DJ40_303 PF13369 Transglutaminase-like superfamily DJ40_3030 PF00204 DNA gyrase B DJ40_3030 PF00986 DNA gyrase B subunit, carboxyl terminus DJ40_3030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_3030 PF01751 Toprim domain DJ40_3031 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_3031 PF03466 LysR substrate binding domain DJ40_3032 PF02525 Flavodoxin-like fold DJ40_3033 PF03989 DNA gyrase C-terminal domain, beta-propeller DJ40_3033 PF00521 DNA gyrase/topoisomerase IV, subunit A DJ40_3034 PF01553 Acyltransferase DJ40_3035 PF07732 Multicopper oxidase DJ40_3035 PF07731 Multicopper oxidase DJ40_3038 PF11842 Domain of unknown function (DUF3362) DJ40_3038 PF08497 Radical SAM N-terminal DJ40_3038 PF04055 Radical SAM superfamily DJ40_3039 PF00248 Aldo/keto reductase family DJ40_304 PF04247 Invasion gene expression up-regulator, SirB DJ40_3040 PF00465 Iron-containing alcohol dehydrogenase DJ40_3041 PF12833 Helix-turn-helix domain DJ40_3041 PF06719 AraC-type transcriptional regulator N-terminus DJ40_3042 PF09335 SNARE associated Golgi protein DJ40_3043 PF01053 Cys/Met metabolism PLP-dependent enzyme DJ40_3044 PF01618 MotA/TolQ/ExbB proton channel family DJ40_3045 PF02472 Biopolymer transport protein ExbD/TolR DJ40_305 PF17827 PrmC N-terminal domain DJ40_305 PF13847 Methyltransferase domain DJ40_3052 PF00437 Type II/IV secretion system protein DJ40_3055 PF04972 BON domain DJ40_3055 PF13629 Pilus formation protein N terminal region DJ40_3055 PF00263 Bacterial type II and III secretion system protein DJ40_306 PF00472 RF-1 domain DJ40_306 PF03462 PCRF domain DJ40_3061 PF02369 Bacterial Ig-like domain (group 1) DJ40_3061 PF07979 Intimin C-type lectin domain DJ40_3061 PF09134 Invasin, domain 3 DJ40_3061 PF11924 Inverse autotransporter, beta-domain DJ40_3063 PF18416 N-acetylglucosamine binding protein domain 2 DJ40_3063 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading DJ40_3065 PF00704 Glycosyl hydrolases family 18 DJ40_3066 PF00419 Fimbrial protein DJ40_3067 PF00577 Outer membrane usher protein DJ40_3067 PF13953 PapC C-terminal domain DJ40_3067 PF13954 PapC N-terminal domain DJ40_3068 PF02753 Pili assembly chaperone PapD, C-terminal domain DJ40_3068 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DJ40_3069 PF00419 Fimbrial protein DJ40_3069 PF09222 Fimbrial adhesin F17-AG, lectin domain DJ40_307 PF01488 Shikimate / quinate 5-dehydrogenase DJ40_307 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DJ40_307 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DJ40_3070 PF01497 Periplasmic binding protein DJ40_3073 PF00771 FHIPEP family DJ40_3074 PF01312 FlhB HrpN YscU SpaS Family DJ40_3075 PF01311 Bacterial export proteins, family 1 DJ40_3076 PF01313 Bacterial export proteins, family 3 DJ40_3077 PF00813 FliP family DJ40_3078 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DJ40_308 PF03550 Outer membrane lipoprotein LolB DJ40_3080 PF00072 Response regulator receiver domain DJ40_3080 PF00158 Sigma-54 interaction domain DJ40_3080 PF02954 Bacterial regulatory protein, Fis family DJ40_3081 PF02049 Flagellar hook-basal body complex protein FliE DJ40_3082 PF01514 Secretory protein of YscJ/FliF family DJ40_3082 PF08345 Flagellar M-ring protein C-terminal DJ40_3085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DJ40_3085 PF18269 T3SS EscN ATPase C-terminal domain DJ40_3089 PF13144 Chaperone for flagella basal body P-ring formation DJ40_309 PF00288 GHMP kinases N terminal domain DJ40_309 PF08544 GHMP kinases C terminal DJ40_3090 PF00460 Flagella basal body rod protein DJ40_3091 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DJ40_3091 PF00460 Flagella basal body rod protein DJ40_3092 PF13860 FlgD Ig-like domain DJ40_3092 PF13861 FlgD Tudor-like domain DJ40_3092 PF03963 Flagellar hook capping protein - N-terminal region DJ40_3093 PF00460 Flagella basal body rod protein DJ40_3093 PF07559 Flagellar basal body protein FlaE DJ40_3093 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DJ40_3094 PF00460 Flagella basal body rod protein DJ40_3094 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DJ40_3095 PF00460 Flagella basal body rod protein DJ40_3095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DJ40_3096 PF02107 Flagellar L-ring protein DJ40_3097 PF02119 Flagellar P-ring protein DJ40_3099 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DJ40_3099 PF00460 Flagella basal body rod protein DJ40_31 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DJ40_31 PF00005 ABC transporter DJ40_310 PF14572 Phosphoribosyl synthetase-associated domain DJ40_310 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DJ40_3104 PF00669 Bacterial flagellin N-terminal helical region DJ40_3104 PF00700 Bacterial flagellin C-terminal helical region DJ40_3107 PF04545 Sigma-70, region 4 DJ40_3107 PF04542 Sigma-70 region 2 DJ40_3108 PF01618 MotA/TolQ/ExbB proton channel family DJ40_3109 PF13677 Membrane MotB of proton-channel complex MotA/MotB DJ40_3109 PF00691 OmpA family DJ40_311 PF10762 Protein of unknown function (DUF2583) DJ40_3113 PF05433 Glycine zipper 2TM domain DJ40_3114 PF00563 EAL domain DJ40_3114 PF03707 Bacterial signalling protein N terminal repeat DJ40_3114 PF13188 PAS domain DJ40_3114 PF00990 Diguanylate cyclase, GGDEF domain DJ40_3115 PF00529 HlyD membrane-fusion protein of T1SS DJ40_3115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DJ40_3116 PF00873 AcrB/AcrD/AcrF family DJ40_3117 PF07906 ShET2 enterotoxin, N-terminal region DJ40_3119 PF03797 Autotransporter beta-domain DJ40_312 PF01195 Peptidyl-tRNA hydrolase DJ40_3120 PF13610 DDE domain DJ40_3121 PF00717 Peptidase S24-like DJ40_3122 PF00817 impB/mucB/samB family DJ40_3122 PF13438 Domain of unknown function (DUF4113) DJ40_3122 PF11798 IMS family HHH motif DJ40_3122 PF11799 impB/mucB/samB family C-terminal domain DJ40_3129 PF00589 Phage integrase family DJ40_313 PF06071 Protein of unknown function (DUF933) DJ40_313 PF01926 50S ribosome-binding GTPase DJ40_3130 PF13610 DDE domain DJ40_3131 PF09134 Invasin, domain 3 DJ40_3131 PF07979 Intimin C-type lectin domain DJ40_3131 PF02369 Bacterial Ig-like domain (group 1) DJ40_3131 PF11924 Inverse autotransporter, beta-domain DJ40_3132 PF02371 Transposase IS116/IS110/IS902 family DJ40_3132 PF01548 Transposase DJ40_3133 PF13610 DDE domain DJ40_3134 PF02195 ParB-like nuclease domain DJ40_3140 PF13610 DDE domain DJ40_3142 PF01546 Peptidase family M20/M25/M40 DJ40_3142 PF07687 Peptidase dimerisation domain DJ40_3143 PF07715 TonB-dependent Receptor Plug Domain DJ40_3143 PF00593 TonB dependent receptor DJ40_3144 PF08242 Methyltransferase domain DJ40_3144 PF00501 AMP-binding enzyme DJ40_3144 PF00668 Condensation domain DJ40_3144 PF00550 Phosphopantetheine attachment site DJ40_3145 PF00501 AMP-binding enzyme DJ40_3145 PF00668 Condensation domain DJ40_3145 PF08242 Methyltransferase domain DJ40_3145 PF00550 Phosphopantetheine attachment site DJ40_3148 PF00975 Thioesterase domain DJ40_3150 PF08021 Siderophore-interacting FAD-binding domain DJ40_3150 PF00664 ABC transporter transmembrane region DJ40_3150 PF00005 ABC transporter DJ40_3150 PF04954 Siderophore-interacting protein DJ40_3151 PF00005 ABC transporter DJ40_3151 PF00664 ABC transporter transmembrane region DJ40_3155 PF02447 GntP family permease DJ40_3156 PF12951 Passenger-associated-transport-repeat DJ40_3157 PF12951 Passenger-associated-transport-repeat DJ40_3158 PF04717 Type VI secretion system, phage-baseplate injector DJ40_3160 PF03527 RHS protein DJ40_3160 PF05593 RHS Repeat DJ40_3162 PF03527 RHS protein DJ40_3162 PF05593 RHS Repeat DJ40_3166 PF00939 Sodium:sulfate symporter transmembrane region DJ40_3167 PF00356 Bacterial regulatory proteins, lacI family DJ40_317 PF02129 X-Pro dipeptidyl-peptidase (S15 family) DJ40_3170 PF07715 TonB-dependent Receptor Plug Domain DJ40_3170 PF00593 TonB dependent receptor DJ40_3171 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DJ40_3172 PF04183 IucA / IucC family DJ40_3172 PF06276 Ferric iron reductase FhuF-like transporter DJ40_3174 PF06276 Ferric iron reductase FhuF-like transporter DJ40_3174 PF04183 IucA / IucC family DJ40_3178 PF00765 Autoinducer synthase DJ40_3179 PF03472 Autoinducer binding domain DJ40_3179 PF00196 Bacterial regulatory proteins, luxR family DJ40_318 PF00486 Transcriptional regulatory protein, C terminal DJ40_318 PF00072 Response regulator receiver domain DJ40_3181 PF02517 CPBP intramembrane metalloprotease DJ40_3183 PF03811 InsA N-terminal domain DJ40_3183 PF12759 InsA C-terminal domain DJ40_319 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_319 PF00512 His Kinase A (phospho-acceptor) domain DJ40_319 PF00672 HAMP domain DJ40_3190 PF00691 OmpA family DJ40_3190 PF05736 OprF membrane domain DJ40_3192 PF07724 AAA domain (Cdc48 subfamily) DJ40_3192 PF17871 AAA lid domain DJ40_3192 PF00004 ATPase family associated with various cellular activities (AAA) DJ40_3192 PF10431 C-terminal, D2-small domain, of ClpB protein DJ40_3196 PF03400 IS1 transposase DJ40_32 PF12911 N-terminal TM domain of oligopeptide transport permease C DJ40_32 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3201 PF12759 InsA C-terminal domain DJ40_3201 PF03811 InsA N-terminal domain DJ40_3202 PF03400 IS1 transposase DJ40_3205 PF00589 Phage integrase family DJ40_3205 PF02899 Phage integrase, N-terminal SAM-like domain DJ40_3210 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A DJ40_3211 PF06755 CbtA_toxin of type IV toxin-antitoxin system DJ40_3213 PF04002 RadC-like JAB domain DJ40_3214 PF03230 Antirestriction protein DJ40_3216 PF06067 Domain of unknown function (DUF932) DJ40_3220 PF00589 Phage integrase family DJ40_3220 PF02899 Phage integrase, N-terminal SAM-like domain DJ40_3221 PF00589 Phage integrase family DJ40_3240 PF06067 Domain of unknown function (DUF932) DJ40_3245 PF04391 Protein of unknown function (DUF533) DJ40_3251 PF00691 OmpA family DJ40_3251 PF05736 OprF membrane domain DJ40_3253 PF00004 ATPase family associated with various cellular activities (AAA) DJ40_3253 PF07724 AAA domain (Cdc48 subfamily) DJ40_3253 PF17871 AAA lid domain DJ40_3253 PF10431 C-terminal, D2-small domain, of ClpB protein DJ40_3267 PF06932 Protein of unknown function (DUF1283) DJ40_3276 PF13356 Arm DNA-binding domain DJ40_3276 PF00589 Phage integrase family DJ40_3276 PF14659 Phage integrase, N-terminal SAM-like domain DJ40_3278 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DJ40_3278 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DJ40_3278 PF01276 Orn/Lys/Arg decarboxylase, major domain DJ40_3279 PF13407 Periplasmic binding protein domain DJ40_328 PF08242 Methyltransferase domain DJ40_3280 PF00005 ABC transporter DJ40_3281 PF02653 Branched-chain amino acid transport system / permease component DJ40_3285 PF01464 Transglycosylase SLT domain DJ40_3285 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DJ40_3286 PF04362 Bacterial Fe(2+) trafficking DJ40_3287 PF14815 NUDIX domain DJ40_3287 PF00730 HhH-GPD superfamily base excision DNA repair protein DJ40_3287 PF10576 Iron-sulfur binding domain of endonuclease III DJ40_3287 PF00633 Helix-hairpin-helix motif DJ40_3288 PF02390 Putative methyltransferase DJ40_3289 PF04320 Protein with unknown function (DUF469) DJ40_3290 PF04960 Glutaminase DJ40_3291 PF11101 Protein of unknown function (DUF2884) DJ40_3292 PF11713 Peptidase C80 family DJ40_3292 PF11647 Membrane Localization Domain DJ40_3292 PF12146 Serine aminopeptidase, S33 DJ40_3292 PF16671 Actin cross-linking domain DJ40_3292 PF07634 RtxA repeat DJ40_3293 PF06969 HemN C-terminal domain DJ40_3293 PF04055 Radical SAM superfamily DJ40_3294 PF01725 Ham1 family DJ40_3295 PF02594 Uncharacterised ACR, YggU family COG1872 DJ40_3296 PF02325 YGGT family DJ40_3297 PF03807 NADP oxidoreductase coenzyme F420-dependent DJ40_3297 PF14748 Pyrroline-5-carboxylate reductase dimerisation DJ40_3298 PF01168 Alanine racemase, N-terminal domain DJ40_3299 PF00437 Type II/IV secretion system protein DJ40_33 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3300 PF04371 Porphyromonas-type peptidyl-arginine deiminase DJ40_3301 PF00795 Carbon-nitrogen hydrolase DJ40_3302 PF03652 Holliday junction resolvase DJ40_3303 PF02622 Uncharacterized ACR, COG1678 DJ40_3304 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DJ40_3304 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DJ40_3305 PF04452 RNA methyltransferase DJ40_3306 PF04231 Endonuclease I DJ40_3307 PF17283 SprT-like zinc ribbon domain DJ40_3307 PF10263 SprT-like family DJ40_3308 PF02772 S-adenosylmethionine synthetase, central domain DJ40_3308 PF02773 S-adenosylmethionine synthetase, C-terminal domain DJ40_3308 PF00438 S-adenosylmethionine synthetase, N-terminal domain DJ40_3310 PF17810 Arginine decarboxylase helical bundle domain DJ40_3310 PF17944 Arginine decarboxylase C-terminal helical extension DJ40_3310 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DJ40_3311 PF00355 Rieske [2Fe-2S] domain DJ40_3312 PF01435 Peptidase family M48 DJ40_3313 PF02779 Transketolase, pyrimidine binding domain DJ40_3313 PF02780 Transketolase, C-terminal domain DJ40_3313 PF00456 Transketolase, thiamine diphosphate binding domain DJ40_3314 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DJ40_3314 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DJ40_3315 PF00162 Phosphoglycerate kinase DJ40_3316 PF01116 Fructose-bisphosphate aldolase class-II DJ40_3317 PF00924 Mechanosensitive ion channel DJ40_3317 PF05552 Conserved TM helix DJ40_3318 PF01810 LysE type translocator DJ40_3319 PF04402 Protein of unknown function (DUF541) DJ40_3320 PF03466 LysR substrate binding domain DJ40_3320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_3321 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DJ40_3322 PF01842 ACT domain DJ40_3322 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DJ40_3322 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DJ40_3323 PF01812 5-formyltetrahydrofolate cyclo-ligase family DJ40_3324 PF05164 Cell division protein ZapA DJ40_3325 PF03695 Uncharacterised protein family (UPF0149) DJ40_3326 PF05195 Aminopeptidase P, N-terminal domain DJ40_3326 PF00557 Metallopeptidase family M24 DJ40_3327 PF01494 FAD binding domain DJ40_3328 PF01494 FAD binding domain DJ40_3329 PF01571 Aminomethyltransferase folate-binding domain DJ40_3329 PF08669 Glycine cleavage T-protein C-terminal barrel domain DJ40_3330 PF01597 Glycine cleavage H-protein DJ40_3331 PF02347 Glycine cleavage system P-protein DJ40_3333 PF05662 Coiled stalk of trimeric autotransporter adhesin DJ40_3333 PF13018 Extended Signal Peptide of Type V secretion system DJ40_3333 PF03895 YadA-like membrane anchor domain DJ40_3333 PF05658 Head domain of trimeric autotransporter adhesin DJ40_3335 PF03006 Haemolysin-III related DJ40_3337 PF01571 Aminomethyltransferase folate-binding domain DJ40_3338 PF03937 Flavinator of succinate dehydrogenase DJ40_3339 PF00072 Response regulator receiver domain DJ40_3339 PF00486 Transcriptional regulatory protein, C terminal DJ40_3340 PF00672 HAMP domain DJ40_3340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_3340 PF00512 His Kinase A (phospho-acceptor) domain DJ40_3341 PF06123 Inner membrane protein CreD DJ40_3342 PF00258 Flavodoxin DJ40_3343 PF00589 Phage integrase family DJ40_3343 PF02899 Phage integrase, N-terminal SAM-like domain DJ40_3344 PF10411 Disulfide bond isomerase protein N-terminus DJ40_3344 PF13098 Thioredoxin-like domain DJ40_3345 PF01368 DHH family DJ40_3345 PF02272 DHHA1 domain DJ40_3345 PF17768 RecJ OB domain DJ40_3346 PF03462 PCRF domain DJ40_3346 PF00472 RF-1 domain DJ40_3347 PF00152 tRNA synthetases class II (D, K and N) DJ40_3347 PF01336 OB-fold nucleic acid binding domain DJ40_3349 PF13356 Arm DNA-binding domain DJ40_3349 PF00589 Phage integrase family DJ40_3349 PF14659 Phage integrase, N-terminal SAM-like domain DJ40_3353 PF15723 Motility quorum-sensing regulator, toxin of MqsA DJ40_3354 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA DJ40_3370 PF03551 Transcriptional regulator PadR-like family DJ40_3371 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family DJ40_3373 PF13407 Periplasmic binding protein domain DJ40_3374 PF02653 Branched-chain amino acid transport system / permease component DJ40_3375 PF00005 ABC transporter DJ40_3376 PF00005 ABC transporter DJ40_3376 PF17912 MalK OB fold domain DJ40_3377 PF13416 Bacterial extracellular solute-binding protein DJ40_3378 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3379 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3380 PF07745 Glycosyl hydrolase family 53 DJ40_3381 PF08533 Beta-galactosidase C-terminal domain DJ40_3381 PF08532 Beta-galactosidase trimerisation domain DJ40_3381 PF02449 Beta-galactosidase DJ40_3382 PF02378 Phosphotransferase system, EIIC DJ40_3382 PF00367 phosphotransferase system, EIIB DJ40_3383 PF02264 LamB porin DJ40_3384 PF00356 Bacterial regulatory proteins, lacI family DJ40_3385 PF01797 Transposase IS200 like DJ40_3386 PF16338 Domain of unknown function (DUF4968) DJ40_3386 PF13802 Galactose mutarotase-like DJ40_3386 PF01055 Glycosyl hydrolases family 31 DJ40_3386 PF17137 Domain of unknown function (DUF5110) DJ40_3387 PF07690 Major Facilitator Superfamily DJ40_3388 PF00356 Bacterial regulatory proteins, lacI family DJ40_3391 PF01116 Fructose-bisphosphate aldolase class-II DJ40_3393 PF00884 Sulfatase DJ40_3394 PF04055 Radical SAM superfamily DJ40_3394 PF13186 Iron-sulfur cluster-binding domain DJ40_3397 PF01979 Amidohydrolase family DJ40_3398 PF03610 PTS system fructose IIA component DJ40_3399 PF03613 PTS system mannose/fructose/sorbose family IID component DJ40_34 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DJ40_3400 PF03609 PTS system sorbose-specific iic component DJ40_3401 PF03830 PTS system sorbose subfamily IIB component DJ40_3402 PF01380 SIS domain DJ40_3403 PF08013 Tagatose 6 phosphate kinase DJ40_3404 PF00455 DeoR C terminal sensor domain DJ40_3404 PF08220 DeoR-like helix-turn-helix domain DJ40_3405 PF00884 Sulfatase DJ40_3406 PF02278 Polysaccharide lyase family 8, super-sandwich domain DJ40_3406 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain DJ40_3406 PF09093 Lyase, catalytic DJ40_3406 PF09092 Lyase, N terminal DJ40_341 PF01370 NAD dependent epimerase/dehydratase family DJ40_3410 PF00484 Carbonic anhydrase DJ40_3413 PF00263 Bacterial type II and III secretion system protein DJ40_3413 PF03958 Bacterial type II/III secretion system short domain DJ40_3415 PF00482 Type II secretion system (T2SS), protein F DJ40_3416 PF08334 Type II secretion system (T2SS), protein G DJ40_3416 PF07963 Prokaryotic N-terminal methylation motif DJ40_342 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DJ40_342 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DJ40_3424 PF01478 Type IV leader peptidase family DJ40_3424 PF06750 Bacterial Peptidase A24 N-terminal domain DJ40_3428 PF00672 HAMP domain DJ40_3428 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DJ40_3428 PF02203 Tar ligand binding domain homologue DJ40_3430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_3430 PF03466 LysR substrate binding domain DJ40_3431 PF03466 LysR substrate binding domain DJ40_3431 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_3432 PF07690 Major Facilitator Superfamily DJ40_3433 PF00356 Bacterial regulatory proteins, lacI family DJ40_3434 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DJ40_3434 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DJ40_3435 PF01568 Molydopterin dinucleotide binding domain DJ40_3435 PF00384 Molybdopterin oxidoreductase DJ40_3436 PF01553 Acyltransferase DJ40_3436 PF13193 AMP-binding enzyme C-terminal domain DJ40_3436 PF00501 AMP-binding enzyme DJ40_3437 PF07690 Major Facilitator Superfamily DJ40_344 PF05962 HutD DJ40_3440 PF00248 Aldo/keto reductase family DJ40_3441 PF02976 DNA mismatch repair enzyme MutH DJ40_3442 PF00293 NUDIX domain DJ40_3443 PF00391 PEP-utilising enzyme, mobile domain DJ40_3443 PF01590 GAF domain DJ40_3443 PF02896 PEP-utilising enzyme, TIM barrel domain DJ40_3443 PF05524 PEP-utilising enzyme, N-terminal DJ40_3444 PF01790 Prolipoprotein diacylglyceryl transferase DJ40_3445 PF00303 Thymidylate synthase DJ40_345 PF01979 Amidohydrolase family DJ40_3450 PF17946 RecC C-terminal domain DJ40_3451 PF05193 Peptidase M16 inactive domain DJ40_3451 PF00675 Insulinase (Peptidase family M16) DJ40_3451 PF16187 Middle or third domain of peptidase_M16 DJ40_3452 PF12705 PD-(D/E)XK nuclease superfamily DJ40_3452 PF00580 UvrD/REP helicase N-terminal domain DJ40_3452 PF13361 UvrD-like helicase C-terminal domain DJ40_3453 PF13538 UvrD-like helicase C-terminal domain DJ40_3454 PF00696 Amino acid kinase family DJ40_3454 PF00583 Acetyltransferase (GNAT) family DJ40_3455 PF11741 AMIN domain DJ40_3455 PF01520 N-acetylmuramoyl-L-alanine amidase DJ40_3459 PF06725 3D domain DJ40_3459 PF03562 MltA specific insert domain DJ40_346 PF00392 Bacterial regulatory proteins, gntR family DJ40_346 PF07702 UTRA domain DJ40_3460 PF00899 ThiF family DJ40_3461 PF02657 Fe-S metabolism associated domain DJ40_3462 PF00266 Aminotransferase class-V DJ40_3464 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_3464 PF03466 LysR substrate binding domain DJ40_3465 PF04241 Protein of unknown function (DUF423) DJ40_3466 PF01728 FtsJ-like methyltransferase DJ40_3466 PF18125 RlmM ferredoxin-like domain DJ40_3467 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DJ40_3467 PF01367 5'-3' exonuclease, C-terminal SAM fold DJ40_3468 PF11892 Domain of unknown function (DUF3412) DJ40_3468 PF03641 Possible lysine decarboxylase DJ40_3468 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases DJ40_3469 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DJ40_3469 PF14489 QueF-like protein DJ40_347 PF01979 Amidohydrolase family DJ40_3470 PF07348 Syd protein (SUKH-2) DJ40_3471 PF04287 tRNA pseudouridine synthase C DJ40_3472 PF00849 RNA pseudouridylate synthase DJ40_3473 PF00258 Flavodoxin DJ40_3474 PF11944 Protein of unknown function (DUF3461) DJ40_3475 PF00132 Bacterial transferase hexapeptide (six repeats) DJ40_3475 PF14602 Hexapeptide repeat of succinyl-transferase DJ40_3475 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DJ40_3476 PF01966 HD domain DJ40_3476 PF01909 Nucleotidyltransferase domain DJ40_3476 PF08335 GlnD PII-uridylyltransferase DJ40_3476 PF01842 ACT domain DJ40_3477 PF00557 Metallopeptidase family M24 DJ40_3478 PF00318 Ribosomal protein S2 DJ40_3479 PF00889 Elongation factor TS DJ40_3480 PF00696 Amino acid kinase family DJ40_3481 PF01765 Ribosome recycling factor DJ40_3482 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DJ40_3482 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DJ40_3482 PF13288 DXP reductoisomerase C-terminal domain DJ40_3483 PF01255 Putative undecaprenyl diphosphate synthase DJ40_3485 PF02163 Peptidase family M50 DJ40_3485 PF17820 PDZ domain DJ40_3486 PF07244 Surface antigen variable number repeat DJ40_3486 PF01103 Surface antigen DJ40_3487 PF03938 Outer membrane protein (OmpH-like) DJ40_3488 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DJ40_3488 PF00132 Bacterial transferase hexapeptide (six repeats) DJ40_3489 PF07977 FabA-like domain DJ40_349 PF00267 Gram-negative porin DJ40_3490 PF00132 Bacterial transferase hexapeptide (six repeats) DJ40_3490 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DJ40_3491 PF02684 Lipid-A-disaccharide synthetase DJ40_3492 PF01351 Ribonuclease HII DJ40_3493 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DJ40_3493 PF01336 OB-fold nucleic acid binding domain DJ40_3493 PF02811 PHP domain DJ40_3493 PF14579 Helix-hairpin-helix motif DJ40_3493 PF07733 Bacterial DNA polymerase III alpha NTPase domain DJ40_3494 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DJ40_3495 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DJ40_3496 PF09179 TilS substrate binding domain DJ40_3496 PF11734 TilS substrate C-terminal domain DJ40_3496 PF01171 PP-loop family DJ40_3497 PF00034 Cytochrome c DJ40_3498 PF07073 Modulator of Rho-dependent transcription termination (ROF) DJ40_3499 PF06786 Uncharacterised protein family (UPF0253) DJ40_35 PF02954 Bacterial regulatory protein, Fis family DJ40_35 PF00158 Sigma-54 interaction domain DJ40_350 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DJ40_3500 PF07152 YaeQ protein DJ40_3501 PF00472 RF-1 domain DJ40_3502 PF17185 NlpE C-terminal OB domain DJ40_3502 PF04170 NlpE N-terminal domain DJ40_3503 PF04073 Aminoacyl-tRNA editing domain DJ40_3503 PF03129 Anticodon binding domain DJ40_3503 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DJ40_3504 PF01980 tRNA-methyltransferase O DJ40_3504 PF18389 TrmO C-terminal domain DJ40_3505 PF16358 RcsF lipoprotein DJ40_3506 PF03180 NLPA lipoprotein DJ40_3507 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3508 PF09383 NIL domain DJ40_3508 PF00005 ABC transporter DJ40_351 PF04996 Succinylarginine dihydrolase DJ40_3516 PF00248 Aldo/keto reductase family DJ40_3518 PF03372 Endonuclease/Exonuclease/phosphatase family DJ40_3519 PF01476 LysM domain DJ40_3519 PF01464 Transglycosylase SLT domain DJ40_352 PF00171 Aldehyde dehydrogenase family DJ40_3520 PF00753 Metallo-beta-lactamase superfamily DJ40_3520 PF16123 Hydroxyacylglutathione hydrolase C-terminus DJ40_3521 PF08241 Methyltransferase domain DJ40_3522 PF00075 RNase H DJ40_3523 PF00929 Exonuclease DJ40_3525 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DJ40_3527 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DJ40_3528 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3529 PF00005 ABC transporter DJ40_3529 PF00571 CBS domain DJ40_353 PF04958 Arginine N-succinyltransferase beta subunit DJ40_3530 PF00268 Ribonucleotide reductase, small chain DJ40_3531 PF00317 Ribonucleotide reductase, all-alpha domain DJ40_3531 PF08343 Ribonucleotide reductase N-terminal DJ40_3531 PF02867 Ribonucleotide reductase, barrel domain DJ40_3532 PF07972 NrdI Flavodoxin like DJ40_3534 PF06392 Acid shock protein repeat DJ40_3535 PF09400 Protein of unknown function (DUF2002) DJ40_3536 PF06711 Protein of unknown function (DUF1198) DJ40_3538 PF00313 'Cold-shock' DNA-binding domain DJ40_3539 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DJ40_354 PF00202 Aminotransferase class-III DJ40_3540 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3541 PF12911 N-terminal TM domain of oligopeptide transport permease C DJ40_3541 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3542 PF00005 ABC transporter DJ40_3543 PF00005 ABC transporter DJ40_3545 PF00547 Urease, gamma subunit DJ40_3546 PF00699 Urease beta subunit DJ40_3547 PF01979 Amidohydrolase family DJ40_3547 PF00449 Urease alpha-subunit, N-terminal domain DJ40_3548 PF02814 UreE urease accessory protein, N-terminal domain DJ40_3548 PF05194 UreE urease accessory protein, C-terminal domain DJ40_3549 PF01730 UreF DJ40_3550 PF02492 CobW/HypB/UreG, nucleotide-binding domain DJ40_3551 PF01774 UreD urease accessory protein DJ40_3552 PF03253 Urea transporter DJ40_3553 PF03824 High-affinity nickel-transport protein DJ40_3554 PF06411 HdeA/HdeB family DJ40_3555 PF07885 Ion channel DJ40_3555 PF02254 TrkA-N domain DJ40_3556 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DJ40_3557 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DJ40_3558 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DJ40_3559 PF02378 Phosphotransferase system, EIIC DJ40_3560 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DJ40_3561 PF07883 Cupin domain DJ40_3561 PF12833 Helix-turn-helix domain DJ40_3562 PF04794 YdjC-like protein DJ40_3565 PF17206 SeqA protein N-terminal domain DJ40_3565 PF03925 SeqA protein C-terminal domain DJ40_3566 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DJ40_3566 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DJ40_3566 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DJ40_3566 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DJ40_3569 PF00486 Transcriptional regulatory protein, C terminal DJ40_3569 PF00072 Response regulator receiver domain DJ40_357 PF00155 Aminotransferase class I and II DJ40_357 PF00392 Bacterial regulatory proteins, gntR family DJ40_3570 PF13493 Domain of unknown function (DUF4118) DJ40_3570 PF13492 GAF domain DJ40_3570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_3570 PF00512 His Kinase A (phospho-acceptor) domain DJ40_3570 PF02702 Osmosensitive K+ channel His kinase sensor domain DJ40_3571 PF02669 K+-transporting ATPase, c chain DJ40_3573 PF03814 Potassium-transporting ATPase A subunit DJ40_3574 PF10725 Protein of unknown function (DUF2517) DJ40_3575 PF08349 Protein of unknown function (DUF1722) DJ40_3576 PF00875 DNA photolyase DJ40_3576 PF03441 FAD binding domain of DNA photolyase DJ40_3577 PF02112 cAMP phosphodiesterases class-II DJ40_3578 PF01784 NIF3 (NGG1p interacting factor 3) DJ40_358 PF00672 HAMP domain DJ40_358 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_358 PF07730 Histidine kinase DJ40_358 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DJ40_3580 PF02682 Carboxyltransferase domain, subdomain C and D DJ40_3581 PF02626 Carboxyltransferase domain, subdomain A and B DJ40_3582 PF03746 LamB/YcsF family DJ40_3585 PF01470 Pyroglutamyl peptidase DJ40_3586 PF03167 Uracil DNA glycosylase superfamily DJ40_3587 PF01228 Glycine radical DJ40_359 PF01699 Sodium/calcium exchanger protein DJ40_3590 PF12796 Ankyrin repeats (3 copies) DJ40_3592 PF00271 Helicase conserved C-terminal domain DJ40_3592 PF00270 DEAD/DEAH box helicase DJ40_3593 PF05175 Methyltransferase small domain DJ40_3594 PF00890 FAD binding domain DJ40_3594 PF02910 Fumarate reductase flavoprotein C-term DJ40_3595 PF04542 Sigma-70 region 2 DJ40_3595 PF08281 Sigma-70, region 4 DJ40_3596 PF03872 Anti sigma-E protein RseA, N-terminal domain DJ40_3596 PF03873 Anti sigma-E protein RseA, C-terminal domain DJ40_3597 PF03888 MucB/RseB N-terminal domain DJ40_3597 PF17188 MucB/RseB C-terminal domain DJ40_36 PF04012 PspA/IM30 family DJ40_360 PF02562 PhoH-like protein DJ40_3600 PF06421 GTP-binding protein LepA C-terminus DJ40_3600 PF03144 Elongation factor Tu domain 2 DJ40_3600 PF00679 Elongation factor G C-terminus DJ40_3600 PF00009 Elongation factor Tu GTP binding domain DJ40_3601 PF10502 Signal peptidase, peptidase S26 DJ40_3602 PF00035 Double-stranded RNA binding motif DJ40_3602 PF14622 Ribonuclease-III-like DJ40_3603 PF07650 KH domain DJ40_3603 PF01926 50S ribosome-binding GTPase DJ40_3604 PF02565 Recombination protein O C terminal DJ40_3604 PF11967 Recombination protein O N terminal DJ40_3605 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DJ40_3606 PF01648 4'-phosphopantetheinyl transferase superfamily DJ40_3607 PF12838 4Fe-4S dicluster domain DJ40_3621 PF06530 Phage antitermination protein Q DJ40_3626 PF00959 Phage lysozyme DJ40_363 PF13994 PgaD-like protein DJ40_364 PF00535 Glycosyl transferase family 2 DJ40_3645 PF01551 Peptidase family M23 DJ40_3645 PF10145 Phage-related minor tail protein DJ40_3645 PF01464 Transglycosylase SLT domain DJ40_365 PF14883 Hypothetical glycosyl hydrolase family 13 DJ40_365 PF01522 Polysaccharide deacetylase DJ40_3656 PF07484 Phage Tail Collar Domain DJ40_3656 PF03335 Phage tail fibre repeat DJ40_3656 PF08400 Prophage tail fibre N-terminal DJ40_3657 PF02413 Caudovirales tail fibre assembly protein, lambda gpK DJ40_3660 PF01380 SIS domain DJ40_3660 PF01418 Helix-turn-helix domain, rpiR family DJ40_3661 PF01380 SIS domain DJ40_3663 PF14437 MafB19-like deaminase DJ40_3664 PF01464 Transglycosylase SLT domain DJ40_3664 PF00497 Bacterial extracellular solute-binding proteins, family 3 DJ40_3665 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DJ40_3665 PF02769 AIR synthase related protein, C-terminal domain DJ40_3665 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DJ40_3668 PF01797 Transposase IS200 like DJ40_3669 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_3669 PF00512 His Kinase A (phospho-acceptor) domain DJ40_367 PF00557 Metallopeptidase family M24 DJ40_3670 PF13942 YfhG lipoprotein DJ40_3671 PF00072 Response regulator receiver domain DJ40_3671 PF00158 Sigma-54 interaction domain DJ40_3672 PF02540 NAD synthase DJ40_3672 PF00795 Carbon-nitrogen hydrolase DJ40_3673 PF00543 Nitrogen regulatory protein P-II DJ40_3674 PF14503 YhfZ C-terminal domain DJ40_3674 PF14502 Helix-turn-helix domain DJ40_3675 PF00175 Oxidoreductase NAD-binding domain DJ40_3675 PF00970 Oxidoreductase FAD-binding domain DJ40_3675 PF00042 Globin DJ40_3676 PF00464 Serine hydroxymethyltransferase DJ40_3677 PF13505 Outer membrane protein beta-barrel domain DJ40_3678 PF00874 PRD domain DJ40_3679 PF12832 MFS_1 like family DJ40_368 PF09313 Domain of unknown function (DUF1971) DJ40_368 PF03848 Tellurite resistance protein TehB DJ40_3680 PF06226 Protein of unknown function (DUF1007) DJ40_3681 PF03824 High-affinity nickel-transport protein DJ40_3682 PF00459 Inositol monophosphatase family DJ40_3683 PF00588 SpoU rRNA Methylase family DJ40_3684 PF02082 Transcriptional regulator DJ40_3685 PF00266 Aminotransferase class-V DJ40_3686 PF01592 NifU-like N terminal domain DJ40_3687 PF01521 Iron-sulphur cluster biosynthesis DJ40_3688 PF00226 DnaJ domain DJ40_3688 PF07743 HSCB C-terminal oligomerisation domain DJ40_3689 PF00012 Hsp70 protein DJ40_3690 PF00111 2Fe-2S iron-sulfur cluster binding domain DJ40_3691 PF04384 Iron-sulphur cluster assembly DJ40_3692 PF12404 Peptidase DJ40_3692 PF00883 Cytosol aminopeptidase family, catalytic domain DJ40_3693 PF14581 SseB protein C-terminal domain DJ40_3693 PF07179 SseB protein N-terminal domain DJ40_3694 PF03797 Autotransporter beta-domain DJ40_3694 PF16168 Adhesin of bacterial autotransporter system, probable stalk DJ40_3694 PF03212 Pertactin DJ40_3695 PF03212 Pertactin DJ40_3695 PF16168 Adhesin of bacterial autotransporter system, probable stalk DJ40_3695 PF03797 Autotransporter beta-domain DJ40_3697 PF00334 Nucleoside diphosphate kinase DJ40_3698 PF04055 Radical SAM superfamily DJ40_37 PF06667 Phage shock protein B DJ40_370 PF00578 AhpC/TSA family DJ40_3700 PF13464 Domain of unknown function (DUF4115) DJ40_3701 PF04551 GcpE protein DJ40_3702 PF13393 Histidyl-tRNA synthetase DJ40_3702 PF03129 Anticodon binding domain DJ40_3703 PF09976 Tetratricopeptide repeat-like domain DJ40_3704 PF13360 PQQ-like domain DJ40_3705 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DJ40_3705 PF01926 50S ribosome-binding GTPase DJ40_3707 PF07191 zinc-ribbons DJ40_3708 PF02601 Exonuclease VII, large subunit DJ40_3708 PF13742 OB-fold nucleic acid binding domain DJ40_3709 PF00571 CBS domain DJ40_3709 PF00478 IMP dehydrogenase / GMP reductase domain DJ40_371 PF02687 FtsX-like permease family DJ40_371 PF12704 MacB-like periplasmic core domain DJ40_371 PF00005 ABC transporter DJ40_3710 PF00958 GMP synthase C terminal domain DJ40_3710 PF00117 Glutamine amidotransferase class-I DJ40_3710 PF02540 NAD synthase DJ40_3711 PF05638 Type VI secretion system effector, Hcp DJ40_3717 PF08543 Phosphomethylpyrimidine kinase DJ40_3720 PF00781 Diacylglycerol kinase catalytic domain DJ40_3722 PF07411 Domain of unknown function (DUF1508) DJ40_3723 PF00072 Response regulator receiver domain DJ40_3723 PF00486 Transcriptional regulatory protein, C terminal DJ40_3724 PF00512 His Kinase A (phospho-acceptor) domain DJ40_3724 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_3724 PF00672 HAMP domain DJ40_3725 PF07690 Major Facilitator Superfamily DJ40_3726 PF00873 AcrB/AcrD/AcrF family DJ40_3727 PF00873 AcrB/AcrD/AcrF family DJ40_3728 PF13533 Biotin-lipoyl like DJ40_3729 PF00005 ABC transporter DJ40_3729 PF08402 TOBE domain DJ40_373 PF02687 FtsX-like permease family DJ40_373 PF12704 MacB-like periplasmic core domain DJ40_373 PF00005 ABC transporter DJ40_3730 PF00155 Aminotransferase class I and II DJ40_3730 PF00392 Bacterial regulatory proteins, gntR family DJ40_3731 PF00202 Aminotransferase class-III DJ40_3733 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3734 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3736 PF00012 Hsp70 protein DJ40_3737 PF03448 MgtE intracellular N domain DJ40_3737 PF01769 Divalent cation transporter DJ40_3737 PF00571 CBS domain DJ40_3738 PF02541 Ppx/GppA phosphatase family DJ40_3739 PF13089 Polyphosphate kinase N-terminal domain DJ40_3739 PF13090 Polyphosphate kinase C-terminal domain 2 DJ40_3739 PF02503 Polyphosphate kinase middle domain DJ40_3739 PF17941 Polyphosphate kinase C-terminal domain 1 DJ40_3740 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3741 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3742 PF00005 ABC transporter DJ40_3744 PF13302 Acetyltransferase (GNAT) domain DJ40_3745 PF00551 Formyl transferase DJ40_3746 PF00586 AIR synthase related protein, N-terminal domain DJ40_3746 PF02769 AIR synthase related protein, C-terminal domain DJ40_3748 PF00860 Permease family DJ40_3749 PF00308 Bacterial dnaA protein DJ40_375 PF10634 Fe2+ transport protein DJ40_3750 PF03960 ArsC family DJ40_3751 PF01435 Peptidase family M48 DJ40_3751 PF07720 Tetratricopeptide repeat DJ40_3752 PF01594 AI-2E family transporter DJ40_3755 PF00578 AhpC/TSA family DJ40_3756 PF01842 ACT domain DJ40_3757 PF00701 Dihydrodipicolinate synthetase family DJ40_3758 PF06804 NlpB/DapX lipoprotein DJ40_3759 PF01259 SAICAR synthetase DJ40_376 PF03239 Iron permease FTR1 family DJ40_3761 PF04228 Putative neutral zinc metallopeptidase DJ40_3762 PF04284 Protein of unknown function (DUF441) DJ40_3763 PF13718 GNAT acetyltransferase 2 DJ40_3763 PF17176 tRNA-binding domain DJ40_3763 PF08351 Domain of unknown function (DUF1726) DJ40_3763 PF05127 Helicase DJ40_3764 PF13980 Uncharacterised protein family (UPF0370) DJ40_3765 PF02557 D-alanyl-D-alanine carboxypeptidase DJ40_3766 PF01546 Peptidase family M20/M25/M40 DJ40_3766 PF07687 Peptidase dimerisation domain DJ40_3767 PF03960 ArsC family DJ40_3770 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3771 PF08402 TOBE domain DJ40_3771 PF00005 ABC transporter DJ40_3772 PF00884 Sulfatase DJ40_3773 PF13186 Iron-sulfur cluster-binding domain DJ40_3773 PF04055 Radical SAM superfamily DJ40_3774 PF04307 LexA-binding, inner membrane-associated putative hydrolase DJ40_3776 PF00873 AcrB/AcrD/AcrF family DJ40_3778 PF00072 Response regulator receiver domain DJ40_3778 PF00196 Bacterial regulatory proteins, luxR family DJ40_3779 PF13187 4Fe-4S dicluster domain DJ40_3779 PF00037 4Fe-4S binding domain DJ40_3779 PF12800 4Fe-4S binding domain DJ40_378 PF04960 Glutaminase DJ40_3780 PF03927 NapD protein DJ40_3781 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DJ40_3781 PF00384 Molybdopterin oxidoreductase DJ40_3781 PF01568 Molydopterin dinucleotide binding domain DJ40_3781 PF10518 TAT (twin-arginine translocation) pathway signal sequence DJ40_3782 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) DJ40_3783 PF03264 NapC/NirT cytochrome c family, N-terminal region DJ40_3784 PF00293 NUDIX domain DJ40_3785 PF03949 Malic enzyme, NAD binding domain DJ40_3785 PF00390 Malic enzyme, N-terminal domain DJ40_3785 PF01515 Phosphate acetyl/butaryl transferase DJ40_3786 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DJ40_3787 PF01218 Coproporphyrinogen III oxidase DJ40_3788 PF00583 Acetyltransferase (GNAT) family DJ40_379 PF08220 DeoR-like helix-turn-helix domain DJ40_379 PF00455 DeoR C terminal sensor domain DJ40_3790 PF03212 Pertactin DJ40_3790 PF13018 Extended Signal Peptide of Type V secretion system DJ40_3790 PF03797 Autotransporter beta-domain DJ40_3790 PF16168 Adhesin of bacterial autotransporter system, probable stalk DJ40_3791 PF04076 Bacterial OB fold (BOF) protein DJ40_3792 PF06572 Protein of unknown function (DUF1131) DJ40_3793 PF04261 Dyp-type peroxidase family DJ40_3794 PF00701 Dihydrodipicolinate synthetase family DJ40_3795 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DJ40_3796 PF12468 Type III secretion system leucine rich repeat protein DJ40_3797 PF00480 ROK family DJ40_3798 PF04074 YhcH/YjgK/YiaL DJ40_3799 PF01380 SIS domain DJ40_3799 PF01418 Helix-turn-helix domain, rpiR family DJ40_38 PF04024 PspC domain DJ40_380 PF00324 Amino acid permease DJ40_3800 PF07690 Major Facilitator Superfamily DJ40_3802 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3803 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3804 PF00005 ABC transporter DJ40_3805 PF00291 Pyridoxal-phosphate dependent enzyme DJ40_3806 PF00486 Transcriptional regulatory protein, C terminal DJ40_3806 PF00072 Response regulator receiver domain DJ40_3807 PF00512 His Kinase A (phospho-acceptor) domain DJ40_3807 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_3807 PF00672 HAMP domain DJ40_3809 PF00155 Aminotransferase class I and II DJ40_381 PF00155 Aminotransferase class I and II DJ40_3810 PF00557 Metallopeptidase family M24 DJ40_3810 PF05195 Aminopeptidase P, N-terminal domain DJ40_3812 PF00474 Sodium:solute symporter family DJ40_3813 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DJ40_3813 PF07992 Pyridine nucleotide-disulphide oxidoreductase DJ40_3814 PF12704 MacB-like periplasmic core domain DJ40_3814 PF00005 ABC transporter DJ40_3814 PF02687 FtsX-like permease family DJ40_3815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DJ40_3816 PF00072 Response regulator receiver domain DJ40_3816 PF00486 Transcriptional regulatory protein, C terminal DJ40_3817 PF16527 Two-component sensor protein CpxA, periplasmic domain DJ40_3817 PF00672 HAMP domain DJ40_3817 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_3817 PF00512 His Kinase A (phospho-acceptor) domain DJ40_3818 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DJ40_3819 PF02896 PEP-utilising enzyme, TIM barrel domain DJ40_3819 PF05524 PEP-utilising enzyme, N-terminal DJ40_3819 PF00391 PEP-utilising enzyme, mobile domain DJ40_382 PF02508 Rnf-Nqr subunit, membrane protein DJ40_3820 PF00381 PTS HPr component phosphorylation site DJ40_3821 PF00291 Pyridoxal-phosphate dependent enzyme DJ40_3823 PF04354 ZipA, C-terminal FtsZ-binding domain DJ40_3824 PF01653 NAD-dependent DNA ligase adenylation domain DJ40_3824 PF00533 BRCA1 C Terminus (BRCT) domain DJ40_3824 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DJ40_3824 PF12826 Helix-hairpin-helix motif DJ40_3824 PF03120 NAD-dependent DNA ligase OB-fold domain DJ40_3825 PF12843 Putative quorum-sensing-regulated virulence factor DJ40_3831 PF00749 tRNA synthetases class I (E and Q), catalytic domain DJ40_3836 PF01773 Na+ dependent nucleoside transporter N-terminus DJ40_3836 PF07670 Nucleoside recognition DJ40_3836 PF07662 Na+ dependent nucleoside transporter C-terminus DJ40_3837 PF01566 Natural resistance-associated macrophage protein DJ40_3839 PF00248 Aldo/keto reductase family DJ40_384 PF04909 Amidohydrolase DJ40_3840 PF03466 LysR substrate binding domain DJ40_3840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_3842 PF02685 Glucokinase DJ40_3843 PF07350 Protein of unknown function (DUF1479) DJ40_3844 PF00155 Aminotransferase class I and II DJ40_3845 PF01292 Prokaryotic cytochrome b561 DJ40_3847 PF03783 Curli production assembly/transport component CsgG DJ40_3849 PF05643 Putative bacterial lipoprotein (DUF799) DJ40_3851 PF02613 Nitrate reductase delta subunit DJ40_3852 PF04976 DMSO reductase anchor subunit (DmsC) DJ40_3853 PF12800 4Fe-4S binding domain DJ40_3853 PF13247 4Fe-4S dicluster domain DJ40_3854 PF00384 Molybdopterin oxidoreductase DJ40_3854 PF01568 Molydopterin dinucleotide binding domain DJ40_3854 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DJ40_3856 PF05638 Type VI secretion system effector, Hcp DJ40_3859 PF00005 ABC transporter DJ40_3860 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3862 PF13406 Transglycosylase SLT domain DJ40_3872 PF00004 ATPase family associated with various cellular activities (AAA) DJ40_3872 PF07724 AAA domain (Cdc48 subfamily) DJ40_3872 PF17871 AAA lid domain DJ40_3872 PF10431 C-terminal, D2-small domain, of ClpB protein DJ40_3873 PF16970 Type-1 fimbrial protein, A DJ40_3874 PF02753 Pili assembly chaperone PapD, C-terminal domain DJ40_3874 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DJ40_3875 PF13953 PapC C-terminal domain DJ40_3875 PF00577 Outer membrane usher protein DJ40_3875 PF13954 PapC N-terminal domain DJ40_388 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_388 PF03466 LysR substrate binding domain DJ40_3884 PF04717 Type VI secretion system, phage-baseplate injector DJ40_389 PF03328 HpcH/HpaI aldolase/citrate lyase family DJ40_3890 PF08274 PhnA Zinc-Ribbon DJ40_3890 PF03831 PhnA domain DJ40_3892 PF04011 LemA family DJ40_3895 PF00005 ABC transporter DJ40_3896 PF03379 CcmB protein DJ40_3897 PF01578 Cytochrome C assembly protein DJ40_3898 PF04995 Heme exporter protein D (CcmD) DJ40_3899 PF03100 CcmE DJ40_390 PF01575 MaoC like domain DJ40_3900 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DJ40_3900 PF01578 Cytochrome C assembly protein DJ40_3901 PF08534 Redoxin DJ40_3902 PF03918 Cytochrome C biogenesis protein DJ40_3903 PF03918 Cytochrome C biogenesis protein DJ40_3904 PF04333 MlaA lipoprotein DJ40_3905 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DJ40_3906 PF04175 Protein of unknown function (DUF406) DJ40_3907 PF00108 Thiolase, N-terminal domain DJ40_3907 PF02803 Thiolase, C-terminal domain DJ40_3908 PF00378 Enoyl-CoA hydratase/isomerase DJ40_3908 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DJ40_3908 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DJ40_3909 PF00300 Histidine phosphatase superfamily (branch 1) DJ40_391 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain DJ40_391 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain DJ40_3910 PF01713 Smr domain DJ40_3911 PF05175 Methyltransferase small domain DJ40_3912 PF01264 Chorismate synthase DJ40_3913 PF03411 Penicillin-insensitive murein endopeptidase DJ40_3914 PF01925 Sulfite exporter TauE/SafE DJ40_3915 PF04315 Elongation factor P hydroxylase DJ40_3916 PF08891 YfcL protein DJ40_3917 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DJ40_3917 PF01266 FAD dependent oxidoreductase DJ40_3918 PF00109 Beta-ketoacyl synthase, N-terminal domain DJ40_3918 PF02801 Beta-ketoacyl synthase, C-terminal domain DJ40_3919 PF01177 Asp/Glu/Hydantoin racemase DJ40_3920 PF00419 Fimbrial protein DJ40_3922 PF00892 EamA-like transporter family DJ40_3924 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DJ40_3924 PF11890 Domain of unknown function (DUF3410) DJ40_3924 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DJ40_3925 PF02774 Semialdehyde dehydrogenase, dimerisation domain DJ40_3925 PF01118 Semialdehyde dehydrogenase, NAD binding domain DJ40_3926 PF01416 tRNA pseudouridine synthase DJ40_3927 PF09335 SNARE associated Golgi protein DJ40_3928 PF17848 Acetyl-coA carboxylase zinc finger domain DJ40_3928 PF01039 Carboxyl transferase domain DJ40_3929 PF08245 Mur ligase middle domain DJ40_3929 PF02875 Mur ligase family, glutamate ligase domain DJ40_393 PF00072 Response regulator receiver domain DJ40_393 PF00196 Bacterial regulatory proteins, luxR family DJ40_3930 PF05036 Sporulation related domain DJ40_3931 PF02674 Colicin V production protein DJ40_3932 PF00156 Phosphoribosyl transferase domain DJ40_3933 PF02441 Flavoprotein DJ40_3934 PF00497 Bacterial extracellular solute-binding proteins, family 3 DJ40_3935 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3936 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3937 PF00005 ABC transporter DJ40_3938 PF08338 Domain of unknown function (DUF1731) DJ40_3938 PF01370 NAD dependent epimerase/dehydratase family DJ40_394 PF00497 Bacterial extracellular solute-binding proteins, family 3 DJ40_394 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_394 PF00989 PAS fold DJ40_394 PF01627 Hpt domain DJ40_394 PF00512 His Kinase A (phospho-acceptor) domain DJ40_394 PF00072 Response regulator receiver domain DJ40_3940 PF12850 Calcineurin-like phosphoesterase superfamily domain DJ40_3941 PF00293 NUDIX domain DJ40_3942 PF03611 PTS system sugar-specific permease component DJ40_3944 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DJ40_3945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DJ40_3945 PF00356 Bacterial regulatory proteins, lacI family DJ40_3946 PF01515 Phosphate acetyl/butaryl transferase DJ40_3946 PF07085 DRTGG domain DJ40_3947 PF00871 Acetokinase family DJ40_3948 PF04217 Protein of unknown function, DUF412 DJ40_3949 PF03887 YfbU domain DJ40_3950 PF13419 Haloacid dehalogenase-like hydrolase DJ40_3951 PF03600 Citrate transporter DJ40_3951 PF02080 TrkA-C domain DJ40_3954 PF00155 Aminotransferase class I and II DJ40_3955 PF03466 LysR substrate binding domain DJ40_3955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_3956 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DJ40_3957 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DJ40_3958 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DJ40_3958 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DJ40_396 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DJ40_396 PF02753 Pili assembly chaperone PapD, C-terminal domain DJ40_3960 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DJ40_3960 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DJ40_3960 PF10531 SLBB domain DJ40_3961 PF00384 Molybdopterin oxidoreductase DJ40_3961 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DJ40_3961 PF01568 Molydopterin dinucleotide binding domain DJ40_3961 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DJ40_3962 PF00146 NADH dehydrogenase DJ40_3963 PF12838 4Fe-4S dicluster domain DJ40_3964 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DJ40_3965 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DJ40_3966 PF00361 Proton-conducting membrane transporter DJ40_3966 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DJ40_3967 PF00361 Proton-conducting membrane transporter DJ40_3968 PF00361 Proton-conducting membrane transporter DJ40_397 PF13953 PapC C-terminal domain DJ40_397 PF00577 Outer membrane usher protein DJ40_397 PF13954 PapC N-terminal domain DJ40_3970 PF04074 YhcH/YjgK/YiaL DJ40_3971 PF01202 Shikimate kinase DJ40_3972 PF00106 short chain dehydrogenase DJ40_3974 PF00356 Bacterial regulatory proteins, lacI family DJ40_3975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DJ40_3975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DJ40_3976 PF07690 Major Facilitator Superfamily DJ40_3977 PF03928 Haem-degrading DJ40_3978 PF00920 Dehydratase family DJ40_3980 PF05957 Bacterial protein of unknown function (DUF883) DJ40_3982 PF00425 chorismate binding enzyme DJ40_3983 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DJ40_3983 PF16582 Middle domain of thiamine pyrophosphate DJ40_3983 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DJ40_3984 PF12697 Alpha/beta hydrolase family DJ40_3985 PF00378 Enoyl-CoA hydratase/isomerase DJ40_3986 PF13378 Enolase C-terminal domain-like DJ40_3987 PF13193 AMP-binding enzyme C-terminal domain DJ40_3987 PF00501 AMP-binding enzyme DJ40_3988 PF02885 Glycosyl transferase family, helical bundle domain DJ40_3989 PF07338 Protein of unknown function (DUF1471) DJ40_399 PF02753 Pili assembly chaperone PapD, C-terminal domain DJ40_399 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DJ40_3990 PF05971 RNA methyltransferase DJ40_3991 PF13426 PAS domain DJ40_3991 PF08447 PAS fold DJ40_3991 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DJ40_3992 PF00005 ABC transporter DJ40_3993 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_3994 PF00497 Bacterial extracellular solute-binding proteins, family 3 DJ40_3996 PF00210 Ferritin-like domain DJ40_3997 PF13649 Methyltransferase domain DJ40_3999 PF00892 EamA-like transporter family DJ40_40 PF04317 YcjX-like family, DUF463 DJ40_4000 PF13505 Outer membrane protein beta-barrel domain DJ40_4004 PF08240 Alcohol dehydrogenase GroES-like domain DJ40_4004 PF00107 Zinc-binding dehydrogenase DJ40_4005 PF13407 Periplasmic binding protein domain DJ40_4006 PF00005 ABC transporter DJ40_4007 PF02653 Branched-chain amino acid transport system / permease component DJ40_4008 PF00356 Bacterial regulatory proteins, lacI family DJ40_4009 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_4009 PF03466 LysR substrate binding domain DJ40_401 PF00005 ABC transporter DJ40_401 PF08402 TOBE domain DJ40_4010 PF00180 Isocitrate/isopropylmalate dehydrogenase DJ40_4011 PF02028 BCCT, betaine/carnitine/choline family transporter DJ40_4012 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DJ40_4012 PF00355 Rieske [2Fe-2S] domain DJ40_4013 PF00970 Oxidoreductase FAD-binding domain DJ40_4013 PF00175 Oxidoreductase NAD-binding domain DJ40_4013 PF00111 2Fe-2S iron-sulfur cluster binding domain DJ40_4014 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DJ40_4014 PF17287 POTRA domain DJ40_4014 PF08479 POTRA domain, ShlB-type DJ40_4019 PF13332 Hemagglutinin repeat DJ40_4019 PF04829 Pre-toxin domain with VENN motif DJ40_4019 PF05860 haemagglutination activity domain DJ40_4019 PF13018 Extended Signal Peptide of Type V secretion system DJ40_402 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_4021 PF17912 MalK OB fold domain DJ40_4021 PF00005 ABC transporter DJ40_4022 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DJ40_4022 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DJ40_4022 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DJ40_4022 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DJ40_4023 PF00356 Bacterial regulatory proteins, lacI family DJ40_4025 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_4026 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_4027 PF04041 beta-1,4-mannooligosaccharide phosphorylase DJ40_403 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_4031 PF00924 Mechanosensitive ion channel DJ40_4032 PF01867 CRISPR associated protein Cas1 DJ40_4034 PF09611 CRISPR-associated protein (Cas_Csy1) DJ40_4035 PF09614 CRISPR-associated protein (Cas_Csy2) DJ40_4036 PF09615 CRISPR-associated protein (Cas_Csy3) DJ40_4037 PF09618 CRISPR-associated protein (Cas_Csy4) DJ40_4038 PF00248 Aldo/keto reductase family DJ40_4040 PF00083 Sugar (and other) transporter DJ40_4042 PF03466 LysR substrate binding domain DJ40_4042 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_4043 PF00765 Autoinducer synthase DJ40_4044 PF00196 Bacterial regulatory proteins, luxR family DJ40_4044 PF03472 Autoinducer binding domain DJ40_4046 PF03471 Transporter associated domain DJ40_4046 PF00999 Sodium/hydrogen exchanger family DJ40_4046 PF02080 TrkA-C domain DJ40_405 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DJ40_405 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DJ40_4050 PF00535 Glycosyl transferase family 2 DJ40_4051 PF07119 Protein of unknown function (DUF1375) DJ40_4052 PF00854 POT family DJ40_4053 PF03279 Bacterial lipid A biosynthesis acyltransferase DJ40_4056 PF01594 AI-2E family transporter DJ40_4057 PF00196 Bacterial regulatory proteins, luxR family DJ40_4058 PF01266 FAD dependent oxidoreductase DJ40_4059 PF13991 BssS protein family DJ40_4060 PF06183 DinI-like family DJ40_4061 PF01979 Amidohydrolase family DJ40_4062 PF03992 Antibiotic biosynthesis monooxygenase DJ40_4063 PF12111 Polyribonucleotide phosphorylase C terminal DJ40_4063 PF10150 Ribonuclease E/G family DJ40_4063 PF00575 S1 RNA binding domain DJ40_4064 PF00849 RNA pseudouridylate synthase DJ40_4064 PF01479 S4 domain DJ40_4065 PF02545 Maf-like protein DJ40_4066 PF02620 Large ribosomal RNA subunit accumulation protein YceD DJ40_4067 PF01783 Ribosomal L32p protein family DJ40_4068 PF02504 Fatty acid synthesis protein DJ40_4069 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DJ40_4069 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DJ40_4070 PF00698 Acyl transferase domain DJ40_4072 PF00550 Phosphopantetheine attachment site DJ40_4073 PF02801 Beta-ketoacyl synthase, C-terminal domain DJ40_4073 PF00109 Beta-ketoacyl synthase, N-terminal domain DJ40_4074 PF01063 Amino-transferase class IV DJ40_4075 PF02618 YceG-like family DJ40_4076 PF02223 Thymidylate kinase DJ40_4077 PF09115 DNA polymerase III, delta subunit, C terminal DJ40_4078 PF01026 TatD related DNase DJ40_4079 PF02378 Phosphotransferase system, EIIC DJ40_4079 PF00367 phosphotransferase system, EIIB DJ40_4080 PF08501 Shikimate dehydrogenase substrate binding domain DJ40_4081 PF01230 HIT domain DJ40_4082 PF07233 Protein of unknown function (DUF1425) DJ40_4083 PF13036 Peptidoglycan-synthase activator LpoB DJ40_4083 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DJ40_4084 PF01636 Phosphotransferase enzyme family DJ40_4085 PF00933 Glycosyl hydrolase family 3 N terminal domain DJ40_4086 PF05728 Uncharacterised protein family (UPF0227) DJ40_4087 PF07992 Pyridine nucleotide-disulphide oxidoreductase DJ40_4090 PF05433 Glycine zipper 2TM domain DJ40_4091 PF03461 TRCF domain DJ40_4091 PF02559 CarD-like/TRCF domain DJ40_4091 PF00271 Helicase conserved C-terminal domain DJ40_4091 PF00270 DEAD/DEAH box helicase DJ40_4091 PF17757 UvrB interaction domain DJ40_4092 PF02687 FtsX-like permease family DJ40_4092 PF12704 MacB-like periplasmic core domain DJ40_4093 PF00005 ABC transporter DJ40_4094 PF02687 FtsX-like permease family DJ40_4094 PF12704 MacB-like periplasmic core domain DJ40_4095 PF00480 ROK family DJ40_4096 PF02146 Sir2 family DJ40_4097 PF07687 Peptidase dimerisation domain DJ40_4097 PF01546 Peptidase family M20/M25/M40 DJ40_4098 PF08007 Cupin superfamily protein DJ40_4099 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_4099 PF08918 PhoQ Sensor DJ40_41 PF05128 Domain of unknown function (DUF697) DJ40_4100 PF00072 Response regulator receiver domain DJ40_4100 PF00486 Transcriptional regulatory protein, C terminal DJ40_4102 PF08328 Adenylosuccinate lyase C-terminal DJ40_4102 PF00206 Lyase DJ40_4103 PF04356 Protein of unknown function (DUF489) DJ40_4105 PF00293 NUDIX domain DJ40_4106 PF00849 RNA pseudouridylate synthase DJ40_4107 PF00180 Isocitrate/isopropylmalate dehydrogenase DJ40_4108 PF00589 Phage integrase family DJ40_4108 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain DJ40_4120 PF03793 PASTA domain DJ40_4120 PF00069 Protein kinase domain DJ40_4124 PF03245 Bacteriophage Rz lysis protein DJ40_4129 PF07927 HicA toxin of bacterial toxin-antitoxin, DJ40_4130 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system DJ40_4136 PF06183 DinI-like family DJ40_4137 PF06183 DinI-like family DJ40_4138 PF00180 Isocitrate/isopropylmalate dehydrogenase DJ40_4139 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DJ40_4139 PF00356 Bacterial regulatory proteins, lacI family DJ40_414 PF00872 Transposase, Mutator family DJ40_4141 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DJ40_4141 PF08447 PAS fold DJ40_4142 PF05368 NmrA-like family DJ40_4143 PF01638 HxlR-like helix-turn-helix DJ40_4145 PF00328 Histidine phosphatase superfamily (branch 2) DJ40_4146 PF14001 YdfZ protein DJ40_4148 PF13404 AsnC-type helix-turn-helix domain DJ40_4148 PF01037 Lrp/AsnC ligand binding domain DJ40_4149 PF10777 Inner membrane protein YlaC DJ40_415 PF00872 Transposase, Mutator family DJ40_4150 PF00109 Beta-ketoacyl synthase, N-terminal domain DJ40_4150 PF08240 Alcohol dehydrogenase GroES-like domain DJ40_4150 PF00550 Phosphopantetheine attachment site DJ40_4150 PF00107 Zinc-binding dehydrogenase DJ40_4150 PF14765 Polyketide synthase dehydratase DJ40_4150 PF00698 Acyl transferase domain DJ40_4150 PF16197 Ketoacyl-synthetase C-terminal extension DJ40_4150 PF08659 KR domain DJ40_4150 PF02801 Beta-ketoacyl synthase, C-terminal domain DJ40_4151 PF02837 Glycosyl hydrolases family 2, sugar binding domain DJ40_4151 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DJ40_4151 PF02929 Beta galactosidase small chain DJ40_4151 PF00703 Glycosyl hydrolases family 2 DJ40_4151 PF16353 Domain of unknown function(DUF4981) DJ40_4152 PF00313 'Cold-shock' DNA-binding domain DJ40_4153 PF10781 Dextransucrase DSRB DJ40_4154 PF00672 HAMP domain DJ40_4154 PF02203 Tar ligand binding domain homologue DJ40_4154 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DJ40_4155 PF02308 MgtC family DJ40_4156 PF00690 Cation transporter/ATPase, N-terminus DJ40_4156 PF00689 Cation transporting ATPase, C-terminus DJ40_4157 PF05247 Flagellar transcriptional activator (FlhD) DJ40_4158 PF05280 Flagellar transcriptional activator (FlhC) DJ40_4159 PF01618 MotA/TolQ/ExbB proton channel family DJ40_4160 PF13677 Membrane MotB of proton-channel complex MotA/MotB DJ40_4160 PF00691 OmpA family DJ40_4161 PF01627 Hpt domain DJ40_4161 PF02895 Signal transducing histidine kinase, homodimeric domain DJ40_4161 PF01584 CheW-like domain DJ40_4161 PF09078 CheY binding DJ40_4161 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_4162 PF01584 CheW-like domain DJ40_4165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DJ40_4165 PF02203 Tar ligand binding domain homologue DJ40_4165 PF00672 HAMP domain DJ40_4166 PF02203 Tar ligand binding domain homologue DJ40_4166 PF00672 HAMP domain DJ40_4166 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DJ40_4167 PF03705 CheR methyltransferase, all-alpha domain DJ40_4167 PF01739 CheR methyltransferase, SAM binding domain DJ40_4168 PF00072 Response regulator receiver domain DJ40_4168 PF01339 CheB methylesterase DJ40_4169 PF00072 Response regulator receiver domain DJ40_4170 PF04344 Chemotaxis phosphatase, CheZ DJ40_4171 PF01510 N-acetylmuramoyl-L-alanine amidase DJ40_4172 PF05662 Coiled stalk of trimeric autotransporter adhesin DJ40_4172 PF13018 Extended Signal Peptide of Type V secretion system DJ40_4172 PF05658 Head domain of trimeric autotransporter adhesin DJ40_4172 PF03895 YadA-like membrane anchor domain DJ40_4173 PF13018 Extended Signal Peptide of Type V secretion system DJ40_4173 PF03895 YadA-like membrane anchor domain DJ40_4173 PF05658 Head domain of trimeric autotransporter adhesin DJ40_4173 PF05662 Coiled stalk of trimeric autotransporter adhesin DJ40_4176 PF00842 Alanine racemase, C-terminal domain DJ40_4176 PF01168 Alanine racemase, N-terminal domain DJ40_4183 PF07351 Protein of unknown function (DUF1480) DJ40_4186 PF02753 Pili assembly chaperone PapD, C-terminal domain DJ40_4186 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DJ40_4190 PF02470 MlaD protein DJ40_4191 PF04403 Paraquat-inducible protein A DJ40_4192 PF13185 GAF domain DJ40_4193 PF04352 ProQ/FINO family DJ40_4193 PF17516 ProQ C-terminal domain DJ40_4194 PF11818 C-terminal domain of tail specific protease (DUF3340) DJ40_4194 PF00595 PDZ domain DJ40_4194 PF03572 Peptidase family S41 DJ40_4194 PF17804 Tail specific protease N-terminal domain DJ40_4195 PF01797 Transposase IS200 like DJ40_4196 PF01797 Transposase IS200 like DJ40_4198 PF01435 Peptidase family M48 DJ40_4199 PF00419 Fimbrial protein DJ40_4200 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DJ40_4200 PF02753 Pili assembly chaperone PapD, C-terminal domain DJ40_4201 PF00577 Outer membrane usher protein DJ40_4201 PF13953 PapC C-terminal domain DJ40_4201 PF13954 PapC N-terminal domain DJ40_4203 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DJ40_4203 PF02753 Pili assembly chaperone PapD, C-terminal domain DJ40_4204 PF07690 Major Facilitator Superfamily DJ40_4205 PF14583 Oligogalacturonate lyase DJ40_4206 PF01614 Bacterial transcriptional regulator DJ40_4206 PF09339 IclR helix-turn-helix domain DJ40_4207 PF01510 N-acetylmuramoyl-L-alanine amidase DJ40_4209 PF04307 LexA-binding, inner membrane-associated putative hydrolase DJ40_4210 PF06178 Oligogalacturonate-specific porin protein (KdgM) DJ40_4211 PF01547 Bacterial extracellular solute-binding protein DJ40_4212 PF00005 ABC transporter DJ40_4212 PF17912 MalK OB fold domain DJ40_4212 PF03459 TOBE domain DJ40_4213 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_4214 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_4215 PF06917 Periplasmic pectate lyase DJ40_4217 PF04962 KduI/IolB family DJ40_4218 PF07883 Cupin domain DJ40_4219 PF13419 Haloacid dehalogenase-like hydrolase DJ40_4220 PF14002 YniB-like protein DJ40_4222 PF00950 ABC 3 transport family DJ40_4223 PF00950 ABC 3 transport family DJ40_4224 PF00005 ABC transporter DJ40_4225 PF01297 Zinc-uptake complex component A periplasmic DJ40_4226 PF01464 Transglycosylase SLT domain DJ40_423 PF04984 Phage tail sheath protein subtilisin-like domain DJ40_423 PF17482 Phage tail sheath C-terminal domain DJ40_4238 PF01464 Transglycosylase SLT domain DJ40_4241 PF01914 MarC family integral membrane protein DJ40_4243 PF13619 KTSC domain DJ40_4244 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DJ40_4244 PF03129 Anticodon binding domain DJ40_4244 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DJ40_4244 PF02824 TGS domain DJ40_4245 PF05198 Translation initiation factor IF-3, N-terminal domain DJ40_4245 PF00707 Translation initiation factor IF-3, C-terminal domain DJ40_4246 PF01632 Ribosomal protein L35 DJ40_4247 PF00453 Ribosomal protein L20 DJ40_4248 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DJ40_4248 PF01409 tRNA synthetases class II core domain (F) DJ40_4249 PF03483 B3/4 domain DJ40_4249 PF03484 tRNA synthetase B5 domain DJ40_4249 PF03147 Ferredoxin-fold anticodon binding domain DJ40_4249 PF01588 Putative tRNA binding domain DJ40_4249 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DJ40_4250 PF00216 Bacterial DNA-binding protein DJ40_4252 PF01032 FecCD transport family DJ40_4253 PF00255 Glutathione peroxidase DJ40_4254 PF00005 ABC transporter DJ40_4255 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DJ40_4256 PF00535 Glycosyl transferase family 2 DJ40_4257 PF02911 Formyl transferase, C-terminal domain DJ40_4257 PF00551 Formyl transferase DJ40_4257 PF01370 NAD dependent epimerase/dehydratase family DJ40_4258 PF01522 Polysaccharide deacetylase DJ40_4259 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase DJ40_4260 PF00892 EamA-like transporter family DJ40_4262 PF00877 NlpC/P60 family DJ40_4263 PF10437 Bacterial lipoate protein ligase C-terminus DJ40_4263 PF03099 Biotin/lipoate A/B protein ligase family DJ40_4264 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DJ40_4265 PF00793 DAHP synthetase I family DJ40_4266 PF03618 Kinase/pyrophosphorylase DJ40_4267 PF00391 PEP-utilising enzyme, mobile domain DJ40_4267 PF02896 PEP-utilising enzyme, TIM barrel domain DJ40_4267 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DJ40_4268 PF01594 AI-2E family transporter DJ40_4269 PF01565 FAD binding domain DJ40_4269 PF02913 FAD linked oxidases, C-terminal domain DJ40_4269 PF13183 4Fe-4S dicluster domain DJ40_4270 PF03061 Thioesterase superfamily DJ40_4271 PF01521 Iron-sulphur cluster biosynthesis DJ40_4272 PF01458 Uncharacterized protein family (UPF0051) DJ40_4273 PF00005 ABC transporter DJ40_4274 PF01458 Uncharacterized protein family (UPF0051) DJ40_4275 PF00266 Aminotransferase class-V DJ40_4276 PF02657 Fe-S metabolism associated domain DJ40_4277 PF01476 LysM domain DJ40_4277 PF17969 L,D-transpeptidase C-terminal domain DJ40_4277 PF03734 L,D-transpeptidase catalytic domain DJ40_4278 PF04728 Lipoprotein leucine-zipper DJ40_4279 PF00224 Pyruvate kinase, barrel domain DJ40_4279 PF02887 Pyruvate kinase, alpha/beta domain DJ40_4284 PF01554 MatE DJ40_4285 PF00677 Lumazine binding domain DJ40_4288 PF07690 Major Facilitator Superfamily DJ40_430 PF04606 Ogr/Delta-like zinc finger DJ40_431 PF02899 Phage integrase, N-terminal SAM-like domain DJ40_431 PF00589 Phage integrase family DJ40_44 PF00158 Sigma-54 interaction domain DJ40_44 PF18024 Helix-turn-helix domain DJ40_443 PF00929 Exonuclease DJ40_444 PF02086 D12 class N6 adenine-specific DNA methyltransferase DJ40_446 PF05840 Bacteriophage replication gene A protein (GPA) DJ40_45 PF08534 Redoxin DJ40_46 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DJ40_46 PF13378 Enolase C-terminal domain-like DJ40_47 PF00246 Zinc carboxypeptidase DJ40_471 PF04984 Phage tail sheath protein subtilisin-like domain DJ40_471 PF17482 Phage tail sheath C-terminal domain DJ40_477 PF04606 Ogr/Delta-like zinc finger DJ40_48 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DJ40_481 PF01066 CDP-alcohol phosphatidyltransferase DJ40_482 PF01541 GIY-YIG catalytic domain DJ40_482 PF02151 UvrB/uvrC motif DJ40_482 PF08459 UvrC Helix-hairpin-helix N-terminal DJ40_485 PF10769 Protein of unknown function (DUF2594) DJ40_486 PF06942 GlpM protein DJ40_488 PF13505 Outer membrane protein beta-barrel domain DJ40_49 PF01544 CorA-like Mg2+ transporter protein DJ40_490 PF00324 Amino acid permease DJ40_491 PF01344 Kelch motif DJ40_492 PF03358 NADPH-dependent FMN reductase DJ40_495 PF13473 Cupredoxin-like domain DJ40_495 PF09375 Imelysin DJ40_496 PF03239 Iron permease FTR1 family DJ40_497 PF00474 Sodium:solute symporter family DJ40_499 PF00171 Aldehyde dehydrogenase family DJ40_499 PF01619 Proline dehydrogenase DJ40_499 PF14850 DNA-binding domain of Proline dehydrogenase DJ40_499 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DJ40_5 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DJ40_5 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DJ40_505 PF00291 Pyridoxal-phosphate dependent enzyme DJ40_506 PF02899 Phage integrase, N-terminal SAM-like domain DJ40_507 PF04545 Sigma-70, region 4 DJ40_507 PF04542 Sigma-70 region 2 DJ40_507 PF04539 Sigma-70 region 3 DJ40_508 PF00700 Bacterial flagellin C-terminal helical region DJ40_508 PF08884 Flagellin D3 domain DJ40_508 PF00669 Bacterial flagellin N-terminal helical region DJ40_509 PF07196 Flagellin hook IN motif DJ40_509 PF02465 Flagellar hook-associated protein 2 N-terminus DJ40_509 PF07195 Flagellar hook-associated protein 2 C-terminus DJ40_510 PF02561 Flagellar protein FliS DJ40_511 PF05400 Flagellar protein FliT DJ40_512 PF12833 Helix-turn-helix domain DJ40_513 PF01966 HD domain DJ40_514 PF00730 HhH-GPD superfamily base excision DNA repair protein DJ40_517 PF02049 Flagellar hook-basal body complex protein FliE DJ40_518 PF01514 Secretory protein of YscJ/FliF family DJ40_518 PF08345 Flagellar M-ring protein C-terminal DJ40_519 PF14842 FliG N-terminal domain DJ40_519 PF01706 FliG C-terminal domain DJ40_519 PF14841 FliG middle domain DJ40_52 PF13472 GDSL-like Lipase/Acylhydrolase family DJ40_52 PF07859 alpha/beta hydrolase fold DJ40_520 PF02108 Flagellar assembly protein FliH DJ40_521 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DJ40_521 PF18269 T3SS EscN ATPase C-terminal domain DJ40_522 PF02050 Flagellar FliJ protein DJ40_523 PF02120 Flagellar hook-length control protein FliK DJ40_524 PF03748 Flagellar basal body-associated protein FliL DJ40_525 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DJ40_525 PF02154 Flagellar motor switch protein FliM DJ40_526 PF16973 Flagellar motor switch protein FliN N-terminal DJ40_526 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DJ40_527 PF04347 Flagellar biosynthesis protein, FliO DJ40_528 PF00813 FliP family DJ40_529 PF01313 Bacterial export proteins, family 3 DJ40_530 PF01311 Bacterial export proteins, family 1 DJ40_533 PF00294 pfkB family carbohydrate kinase DJ40_534 PF02653 Branched-chain amino acid transport system / permease component DJ40_535 PF00005 ABC transporter DJ40_536 PF13407 Periplasmic binding protein domain DJ40_537 PF02653 Branched-chain amino acid transport system / permease component DJ40_538 PF00596 Class II Aldolase and Adducin N-terminal domain DJ40_539 PF04198 Putative sugar-binding domain DJ40_54 PF01171 PP-loop family DJ40_540 PF00669 Bacterial flagellin N-terminal helical region DJ40_541 PF00460 Flagella basal body rod protein DJ40_541 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DJ40_542 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DJ40_542 PF10135 Rod binding protein DJ40_543 PF02119 Flagellar P-ring protein DJ40_544 PF02107 Flagellar L-ring protein DJ40_545 PF00460 Flagella basal body rod protein DJ40_545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DJ40_546 PF00460 Flagella basal body rod protein DJ40_546 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DJ40_547 PF00460 Flagella basal body rod protein DJ40_547 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DJ40_547 PF07559 Flagellar basal body protein FlaE DJ40_548 PF13861 FlgD Tudor-like domain DJ40_548 PF13860 FlgD Ig-like domain DJ40_548 PF03963 Flagellar hook capping protein - N-terminal region DJ40_549 PF00460 Flagella basal body rod protein DJ40_549 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DJ40_55 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DJ40_55 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DJ40_55 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DJ40_55 PF10371 Domain of unknown function DJ40_55 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DJ40_550 PF00460 Flagella basal body rod protein DJ40_551 PF13144 Chaperone for flagella basal body P-ring formation DJ40_551 PF17656 FlgA N-terminal domain DJ40_552 PF04316 Anti-sigma-28 factor, FlgM DJ40_553 PF05130 FlgN protein DJ40_554 PF11924 Inverse autotransporter, beta-domain DJ40_554 PF02369 Bacterial Ig-like domain (group 1) DJ40_554 PF09134 Invasin, domain 3 DJ40_554 PF07979 Intimin C-type lectin domain DJ40_555 PF06366 Flagellar protein FlhE DJ40_556 PF00771 FHIPEP family DJ40_557 PF01312 FlhB HrpN YscU SpaS Family DJ40_56 PF00893 Small Multidrug Resistance protein DJ40_560 PF10709 Protein of unknown function (DUF2511) DJ40_562 PF04234 CopC domain DJ40_563 PF00210 Ferritin-like domain DJ40_564 PF06440 DNA polymerase III, theta subunit DJ40_565 PF00561 alpha/beta hydrolase fold DJ40_567 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DJ40_567 PF00326 Prolyl oligopeptidase family DJ40_568 PF13995 YebF-like protein DJ40_57 PF02308 MgtC family DJ40_570 PF07130 YebG protein DJ40_571 PF00270 DEAD/DEAH box helicase DJ40_571 PF03880 DbpA RNA binding domain DJ40_571 PF00271 Helicase conserved C-terminal domain DJ40_572 PF02222 ATP-grasp domain DJ40_573 PF03701 Uncharacterised protein family (UPF0181) DJ40_574 PF04715 Anthranilate synthase component I, N terminal region DJ40_574 PF00425 chorismate binding enzyme DJ40_575 PF00293 NUDIX domain DJ40_576 PF03313 Serine dehydratase alpha chain DJ40_576 PF03315 Serine dehydratase beta chain DJ40_577 PF01613 Flavin reductase like domain DJ40_578 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal DJ40_578 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal DJ40_579 PF07690 Major Facilitator Superfamily DJ40_58 PF03891 Domain of unknown function (DUF333) DJ40_580 PF03328 HpcH/HpaI aldolase/citrate lyase family DJ40_581 PF01557 Fumarylacetoacetate (FAA) hydrolase family DJ40_582 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase DJ40_583 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DJ40_584 PF00171 Aldehyde dehydrogenase family DJ40_585 PF01557 Fumarylacetoacetate (FAA) hydrolase family DJ40_586 PF01557 Fumarylacetoacetate (FAA) hydrolase family DJ40_587 PF01047 MarR family DJ40_588 PF03471 Transporter associated domain DJ40_588 PF03741 Integral membrane protein TerC family DJ40_589 PF03610 PTS system fructose IIA component DJ40_589 PF03830 PTS system sorbose subfamily IIB component DJ40_59 PF03724 META domain DJ40_590 PF03609 PTS system sorbose-specific iic component DJ40_591 PF03613 PTS system mannose/fructose/sorbose family IID component DJ40_592 PF06173 Protein of unknown function (DUF986) DJ40_593 PF02659 Putative manganese efflux pump DJ40_594 PF07715 TonB-dependent Receptor Plug Domain DJ40_594 PF00593 TonB dependent receptor DJ40_595 PF13426 PAS domain DJ40_595 PF08448 PAS fold DJ40_595 PF08447 PAS fold DJ40_595 PF05231 MASE1 DJ40_595 PF00990 Diguanylate cyclase, GGDEF domain DJ40_595 PF00563 EAL domain DJ40_597 PF13847 Methyltransferase domain DJ40_599 PF00313 'Cold-shock' DNA-binding domain DJ40_6 PF00877 NlpC/P60 family DJ40_60 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DJ40_60 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DJ40_601 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP DJ40_602 PF00324 Amino acid permease DJ40_605 PF13974 YebO-like protein DJ40_606 PF13996 YobH-like protein DJ40_607 PF10964 Protein of unknown function (DUF2766) DJ40_609 PF12833 Helix-turn-helix domain DJ40_61 PF11739 Dicarboxylate transport DJ40_611 PF00005 ABC transporter DJ40_611 PF00664 ABC transporter transmembrane region DJ40_614 PF06167 Glucose-regulated metallo-peptidase M90 DJ40_616 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DJ40_616 PF00356 Bacterial regulatory proteins, lacI family DJ40_617 PF01306 LacY proton/sugar symporter DJ40_618 PF16874 Glycosyl hydrolase family 36 C-terminal domain DJ40_618 PF16875 Glycosyl hydrolase family 36 N-terminal domain DJ40_62 PF13617 YnbE-like lipoprotein DJ40_621 PF17837 4'-phosphopantetheinyl transferase N-terminal domain DJ40_621 PF01648 4'-phosphopantetheinyl transferase superfamily DJ40_622 PF03480 Bacterial extracellular solute-binding protein, family 7 DJ40_624 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DJ40_625 PF00072 Response regulator receiver domain DJ40_625 PF00196 Bacterial regulatory proteins, luxR family DJ40_627 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) DJ40_629 PF01522 Polysaccharide deacetylase DJ40_63 PF07027 Protein of unknown function (DUF1318) DJ40_631 PF01554 MatE DJ40_632 PF00764 Arginosuccinate synthase DJ40_633 PF01070 FMN-dependent dehydrogenase DJ40_635 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DJ40_635 PF13378 Enolase C-terminal domain-like DJ40_636 PF01557 Fumarylacetoacetate (FAA) hydrolase family DJ40_638 PF04134 Protein of unknown function, DUF393 DJ40_639 PF07690 Major Facilitator Superfamily DJ40_64 PF08125 Mannitol dehydrogenase C-terminal domain DJ40_64 PF01232 Mannitol dehydrogenase Rossmann domain DJ40_640 PF09134 Invasin, domain 3 DJ40_640 PF11924 Inverse autotransporter, beta-domain DJ40_640 PF02369 Bacterial Ig-like domain (group 1) DJ40_641 PF04363 Protein of unknown function (DUF496) DJ40_643 PF08411 Exonuclease C-terminal DJ40_643 PF00929 Exonuclease DJ40_644 PF13520 Amino acid permease DJ40_646 PF00465 Iron-containing alcohol dehydrogenase DJ40_647 PF00005 ABC transporter DJ40_648 PF02653 Branched-chain amino acid transport system / permease component DJ40_65 PF00325 Bacterial regulatory proteins, crp family DJ40_65 PF04198 Putative sugar-binding domain DJ40_650 PF01370 NAD dependent epimerase/dehydratase family DJ40_651 PF01634 ATP phosphoribosyltransferase DJ40_651 PF08029 HisG, C-terminal domain DJ40_652 PF00815 Histidinol dehydrogenase DJ40_653 PF00155 Aminotransferase class I and II DJ40_654 PF00475 Imidazoleglycerol-phosphate dehydratase DJ40_655 PF00117 Glutamine amidotransferase class-I DJ40_656 PF00977 Histidine biosynthesis protein DJ40_657 PF00977 Histidine biosynthesis protein DJ40_658 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DJ40_658 PF01502 Phosphoribosyl-AMP cyclohydrolase DJ40_659 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DJ40_659 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DJ40_66 PF02525 Flavodoxin-like fold DJ40_660 PF00483 Nucleotidyl transferase DJ40_661 PF00483 Nucleotidyl transferase DJ40_662 PF04183 IucA / IucC family DJ40_662 PF06276 Ferric iron reductase FhuF-like transporter DJ40_663 PF07715 TonB-dependent Receptor Plug Domain DJ40_663 PF00593 TonB dependent receptor DJ40_663 PF07660 Secretin and TonB N terminus short domain DJ40_664 PF01497 Periplasmic binding protein DJ40_665 PF01032 FecCD transport family DJ40_666 PF01032 FecCD transport family DJ40_667 PF00005 ABC transporter DJ40_668 PF06276 Ferric iron reductase FhuF-like transporter DJ40_668 PF04183 IucA / IucC family DJ40_67 PF11898 Domain of unknown function (DUF3418) DJ40_67 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DJ40_67 PF00271 Helicase conserved C-terminal domain DJ40_67 PF04408 Helicase associated domain (HA2) DJ40_67 PF00270 DEAD/DEAH box helicase DJ40_670 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DJ40_671 PF00282 Pyridoxal-dependent decarboxylase conserved domain DJ40_672 PF06276 Ferric iron reductase FhuF-like transporter DJ40_672 PF11575 FhuF 2Fe-2S C-terminal domain DJ40_673 PF03471 Transporter associated domain DJ40_673 PF03741 Integral membrane protein TerC family DJ40_673 PF00571 CBS domain DJ40_674 PF05170 AsmA family DJ40_675 PF00692 dUTPase DJ40_676 PF00485 Phosphoribulokinase / Uridine kinase family DJ40_677 PF10609 NUBPL iron-transfer P-loop NTPase DJ40_678 PF01588 Putative tRNA binding domain DJ40_678 PF09334 tRNA synthetases class I (M) DJ40_682 PF07690 Major Facilitator Superfamily DJ40_683 PF03788 LrgA family DJ40_684 PF04172 LrgB-like family DJ40_685 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region DJ40_685 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DJ40_686 PF00390 Malic enzyme, N-terminal domain DJ40_686 PF03949 Malic enzyme, NAD binding domain DJ40_687 PF02698 DUF218 domain DJ40_688 PF02653 Branched-chain amino acid transport system / permease component DJ40_689 PF00005 ABC transporter DJ40_690 PF13407 Periplasmic binding protein domain DJ40_691 PF04235 Protein of unknown function (DUF418) DJ40_692 PF01227 GTP cyclohydrolase I DJ40_693 PF06779 Uncharacterised MFS-type transporter YbfB DJ40_694 PF03466 LysR substrate binding domain DJ40_694 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_695 PF08240 Alcohol dehydrogenase GroES-like domain DJ40_695 PF00107 Zinc-binding dehydrogenase DJ40_696 PF00756 Putative esterase DJ40_699 PF13533 Biotin-lipoyl like DJ40_70 PF00089 Trypsin DJ40_700 PF00005 ABC transporter DJ40_702 PF00994 Probable molybdopterin binding domain DJ40_702 PF03454 MoeA C-terminal region (domain IV) DJ40_702 PF03453 MoeA N-terminal region (domain I and II) DJ40_703 PF00899 ThiF family DJ40_705 PF12848 ABC transporter DJ40_705 PF00005 ABC transporter DJ40_72 PF01292 Prokaryotic cytochrome b561 DJ40_73 PF04264 YceI-like domain DJ40_730 PF10431 C-terminal, D2-small domain, of ClpB protein DJ40_730 PF07724 AAA domain (Cdc48 subfamily) DJ40_730 PF17871 AAA lid domain DJ40_730 PF00004 ATPase family associated with various cellular activities (AAA) DJ40_733 PF00691 OmpA family DJ40_733 PF05736 OprF membrane domain DJ40_74 PF18807 Tripartite Tc toxins repeat DJ40_74 PF14431 YwqJ-like deaminase DJ40_740 PF00698 Acyl transferase domain DJ40_741 PF00550 Phosphopantetheine attachment site DJ40_744 PF00378 Enoyl-CoA hydratase/isomerase DJ40_746 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal DJ40_746 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal DJ40_748 PF02801 Beta-ketoacyl synthase, C-terminal domain DJ40_748 PF00109 Beta-ketoacyl synthase, N-terminal domain DJ40_749 PF07977 FabA-like domain DJ40_75 PF02074 Carboxypeptidase Taq (M32) metallopeptidase DJ40_752 PF01565 FAD binding domain DJ40_752 PF08031 Berberine and berberine like DJ40_757 PF13610 DDE domain DJ40_759 PF04358 DsrC like protein DJ40_76 PF00512 His Kinase A (phospho-acceptor) domain DJ40_76 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_76 PF00672 HAMP domain DJ40_760 PF00708 Acylphosphatase DJ40_761 PF10672 S-adenosylmethionine-dependent methyltransferase DJ40_761 PF17785 PUA-like domain DJ40_762 PF08755 Hemimethylated DNA-binding protein YccV like DJ40_763 PF13380 CoA binding domain DJ40_764 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DJ40_765 PF02142 MGS-like domain DJ40_766 PF13361 UvrD-like helicase C-terminal domain DJ40_766 PF12462 DNA helicase IV / RNA helicase N terminal DJ40_766 PF00580 UvrD/REP helicase N-terminal domain DJ40_767 PF03733 Inner membrane component domain DJ40_768 PF12805 FUSC-like inner membrane protein yccS DJ40_769 PF04993 TfoX N-terminal domain DJ40_769 PF04994 TfoX C-terminal domain DJ40_77 PF00486 Transcriptional regulatory protein, C terminal DJ40_77 PF00072 Response regulator receiver domain DJ40_770 PF03846 Cell division inhibitor SulA DJ40_771 PF00691 OmpA family DJ40_771 PF01389 OmpA-like transmembrane domain DJ40_772 PF17414 MatP C-terminal ribbon-helix-helix domain DJ40_772 PF06303 MatP N-terminal domain DJ40_773 PF13654 AAA domain DJ40_773 PF05362 Lon protease (S16) C-terminal proteolytic domain DJ40_774 PF07977 FabA-like domain DJ40_776 PF02801 Beta-ketoacyl synthase, C-terminal domain DJ40_776 PF00109 Beta-ketoacyl synthase, N-terminal domain DJ40_777 PF03886 ABC-type transport auxiliary lipoprotein component DJ40_778 PF02470 MlaD protein DJ40_779 PF04403 Paraquat-inducible protein A DJ40_780 PF12848 ABC transporter DJ40_780 PF16326 ABC transporter C-terminal domain DJ40_780 PF00005 ABC transporter DJ40_781 PF01170 Putative RNA methylase family UPF0020 DJ40_781 PF02926 THUMP domain DJ40_781 PF10672 S-adenosylmethionine-dependent methyltransferase DJ40_782 PF03476 MOSC N-terminal beta barrel domain DJ40_782 PF03473 MOSC domain DJ40_782 PF00111 2Fe-2S iron-sulfur cluster binding domain DJ40_783 PF07126 Cell-division protein ZapC DJ40_784 PF01180 Dihydroorotate dehydrogenase DJ40_785 PF11940 Domain of unknown function (DUF3458) Ig-like fold DJ40_785 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DJ40_785 PF01433 Peptidase family M1 domain DJ40_786 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DJ40_786 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DJ40_787 PF01336 OB-fold nucleic acid binding domain DJ40_787 PF00152 tRNA synthetases class II (D, K and N) DJ40_788 PF00267 Gram-negative porin DJ40_789 PF01797 Transposase IS200 like DJ40_79 PF13520 Amino acid permease DJ40_790 PF01797 Transposase IS200 like DJ40_791 PF00155 Aminotransferase class I and II DJ40_792 PF00753 Metallo-beta-lactamase superfamily DJ40_793 PF05951 Bacterial protein of unknown function (DUF882) DJ40_794 PF03734 L,D-transpeptidase catalytic domain DJ40_794 PF01471 Putative peptidoglycan binding domain DJ40_795 PF04310 MukB N-terminal DJ40_795 PF16330 MukB hinge domain DJ40_796 PF04288 MukE-like family DJ40_797 PF03882 MukF winged-helix domain DJ40_797 PF17193 MukF C-terminal domain DJ40_797 PF17192 MukF middle domain DJ40_799 PF01636 Phosphotransferase enzyme family DJ40_8 PF00462 Glutaredoxin DJ40_80 PF07338 Protein of unknown function (DUF1471) DJ40_800 PF02348 Cytidylyltransferase DJ40_801 PF03966 Trm112p-like protein DJ40_802 PF00313 'Cold-shock' DNA-binding domain DJ40_805 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DJ40_806 PF00005 ABC transporter DJ40_806 PF00664 ABC transporter transmembrane region DJ40_807 PF03772 Competence protein DJ40_807 PF00753 Metallo-beta-lactamase superfamily DJ40_808 PF00216 Bacterial DNA-binding protein DJ40_81 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DJ40_81 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DJ40_81 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DJ40_810 PF00575 S1 RNA binding domain DJ40_811 PF02224 Cytidylate kinase DJ40_812 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DJ40_813 PF00266 Aminotransferase class-V DJ40_816 PF17763 Glutaminase/Asparaginase C-terminal domain DJ40_816 PF00710 Asparaginase, N-terminal DJ40_817 PF18381 YcaO cyclodehydratase C-terminal domain DJ40_817 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding DJ40_818 PF01226 Formate/nitrite transporter DJ40_819 PF01228 Glycine radical DJ40_819 PF02901 Pyruvate formate lyase-like DJ40_82 PF02233 NAD(P) transhydrogenase beta subunit DJ40_821 PF04055 Radical SAM superfamily DJ40_822 PF07690 Major Facilitator Superfamily DJ40_823 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DJ40_823 PF02403 Seryl-tRNA synthetase N-terminal domain DJ40_824 PF00004 ATPase family associated with various cellular activities (AAA) DJ40_824 PF16193 AAA C-terminal domain DJ40_824 PF12002 MgsA AAA+ ATPase C terminal DJ40_826 PF03548 Outer membrane lipoprotein carrier protein LolA DJ40_827 PF17854 FtsK alpha domain DJ40_827 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DJ40_827 PF01580 FtsK/SpoIIIE family DJ40_827 PF09397 Ftsk gamma domain DJ40_828 PF01037 Lrp/AsnC ligand binding domain DJ40_829 PF07992 Pyridine nucleotide-disulphide oxidoreductase DJ40_83 PF00582 Universal stress protein family DJ40_830 PF00005 ABC transporter DJ40_830 PF00664 ABC transporter transmembrane region DJ40_831 PF00005 ABC transporter DJ40_831 PF00664 ABC transporter transmembrane region DJ40_832 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DJ40_833 PF01176 Translation initiation factor 1A / IF-1 DJ40_834 PF10431 C-terminal, D2-small domain, of ClpB protein DJ40_834 PF00004 ATPase family associated with various cellular activities (AAA) DJ40_834 PF07724 AAA domain (Cdc48 subfamily) DJ40_834 PF17871 AAA lid domain DJ40_834 PF02861 Clp amino terminal domain, pathogenicity island component DJ40_835 PF02617 ATP-dependent Clp protease adaptor protein ClpS DJ40_836 PF00313 'Cold-shock' DNA-binding domain DJ40_837 PF00005 ABC transporter DJ40_837 PF02687 FtsX-like permease family DJ40_837 PF12704 MacB-like periplasmic core domain DJ40_838 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DJ40_839 PF04393 Protein of unknown function (DUF535) DJ40_84 PF13545 Crp-like helix-turn-helix domain DJ40_84 PF00027 Cyclic nucleotide-binding domain DJ40_840 PF11398 Protein of unknown function (DUF2813) DJ40_841 PF03956 Lysine exporter LysO DJ40_842 PF03063 Prismane/CO dehydrogenase family DJ40_843 PF00111 2Fe-2S iron-sulfur cluster binding domain DJ40_843 PF00970 Oxidoreductase FAD-binding domain DJ40_843 PF00175 Oxidoreductase NAD-binding domain DJ40_844 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DJ40_844 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DJ40_844 PF00205 Thiamine pyrophosphate enzyme, central domain DJ40_845 PF01212 Beta-eliminating lyase DJ40_846 PF13460 NAD(P)H-binding DJ40_846 PF11066 Protein of unknown function (DUF2867) DJ40_847 PF01370 NAD dependent epimerase/dehydratase family DJ40_848 PF12883 Protein of unknown function (DUF3828) DJ40_849 PF01817 Chorismate mutase type II DJ40_85 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DJ40_85 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DJ40_850 PF00005 ABC transporter DJ40_851 PF00497 Bacterial extracellular solute-binding proteins, family 3 DJ40_852 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_853 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_854 PF00892 EamA-like transporter family DJ40_855 PF10100 Staphylopine dehydrogenase DJ40_856 PF03059 Nicotianamine synthase protein DJ40_857 PF00005 ABC transporter DJ40_858 PF01032 FecCD transport family DJ40_86 PF00245 Alkaline phosphatase DJ40_861 PF00497 Bacterial extracellular solute-binding proteins, family 3 DJ40_862 PF05958 tRNA (Uracil-5-)-methyltransferase DJ40_863 PF10767 Protein of unknown function (DUF2593) DJ40_864 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_865 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_866 PF00005 ABC transporter DJ40_866 PF08402 TOBE domain DJ40_867 PF13416 Bacterial extracellular solute-binding protein DJ40_868 PF10722 Putative bacterial sensory transduction regulator DJ40_869 PF07214 Protein of unknown function (DUF1418) DJ40_870 PF00462 Glutaredoxin DJ40_871 PF06826 Predicted Permease Membrane Region DJ40_871 PF02080 TrkA-C domain DJ40_873 PF01569 PAP2 superfamily DJ40_874 PF01791 DeoC/LacD family aldolase DJ40_875 PF00455 DeoR C terminal sensor domain DJ40_875 PF08220 DeoR-like helix-turn-helix domain DJ40_877 PF00768 D-alanyl-D-alanine carboxypeptidase DJ40_877 PF07943 Penicillin-binding protein 5, C-terminal domain DJ40_878 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_879 PF09383 NIL domain DJ40_879 PF00005 ABC transporter DJ40_88 PF13419 Haloacid dehalogenase-like hydrolase DJ40_880 PF03180 NLPA lipoprotein DJ40_883 PF13417 Glutathione S-transferase, N-terminal domain DJ40_883 PF00043 Glutathione S-transferase, C-terminal domain DJ40_884 PF07715 TonB-dependent Receptor Plug Domain DJ40_884 PF00593 TonB dependent receptor DJ40_885 PF00005 ABC transporter DJ40_886 PF01032 FecCD transport family DJ40_888 PF00324 Amino acid permease DJ40_89 PF01842 ACT domain DJ40_890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DJ40_890 PF03466 LysR substrate binding domain DJ40_891 PF03601 Conserved hypothetical protein 698 DJ40_892 PF01261 Xylose isomerase-like TIM barrel DJ40_893 PF13953 PapC C-terminal domain DJ40_893 PF13954 PapC N-terminal domain DJ40_893 PF00577 Outer membrane usher protein DJ40_894 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DJ40_894 PF02753 Pili assembly chaperone PapD, C-terminal domain DJ40_896 PF17550 Family of unknown function DJ40_897 PF00486 Transcriptional regulatory protein, C terminal DJ40_898 PF02378 Phosphotransferase system, EIIC DJ40_898 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DJ40_899 PF00294 pfkB family carbohydrate kinase DJ40_9 PF00929 Exonuclease DJ40_90 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DJ40_90 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DJ40_90 PF00205 Thiamine pyrophosphate enzyme, central domain DJ40_900 PF00381 PTS HPr component phosphorylation site DJ40_900 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DJ40_901 PF00293 NUDIX domain DJ40_902 PF02653 Branched-chain amino acid transport system / permease component DJ40_903 PF00005 ABC transporter DJ40_905 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DJ40_906 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DJ40_906 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DJ40_907 PF00171 Aldehyde dehydrogenase family DJ40_909 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DJ40_909 PF01842 ACT domain DJ40_909 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DJ40_911 PF03692 Putative zinc- or iron-chelating domain DJ40_912 PF03222 Tryptophan/tyrosine permease family DJ40_913 PF08207 Elongation factor P (EF-P) KOW-like domain DJ40_913 PF01132 Elongation factor P (EF-P) OB domain DJ40_913 PF09285 Elongation factor P, C-terminal DJ40_914 PF03786 D-mannonate dehydratase (UxuA) DJ40_915 PF01232 Mannitol dehydrogenase Rossmann domain DJ40_915 PF08125 Mannitol dehydrogenase C-terminal domain DJ40_916 PF07729 FCD domain DJ40_916 PF00392 Bacterial regulatory proteins, gntR family DJ40_918 PF07683 Cobalamin synthesis protein cobW C-terminal domain DJ40_918 PF02492 CobW/HypB/UreG, nucleotide-binding domain DJ40_919 PF01569 PAP2 superfamily DJ40_920 PF00877 NlpC/P60 family DJ40_921 PF12792 CSS motif domain associated with EAL DJ40_921 PF00563 EAL domain DJ40_922 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DJ40_923 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_924 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_924 PF12911 N-terminal TM domain of oligopeptide transport permease C DJ40_925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DJ40_925 PF00005 ABC transporter DJ40_926 PF13989 YejG-like protein DJ40_927 PF07690 Major Facilitator Superfamily DJ40_928 PF00849 RNA pseudouridylate synthase DJ40_928 PF01479 S4 domain DJ40_929 PF04851 Type III restriction enzyme, res subunit DJ40_929 PF00271 Helicase conserved C-terminal domain DJ40_930 PF01386 Ribosomal L25p family DJ40_931 PF01797 Transposase IS200 like DJ40_932 PF04245 37-kD nucleoid-associated bacterial protein DJ40_933 PF07208 Protein of unknown function (DUF1414) DJ40_934 PF00884 Sulfatase DJ40_934 PF11893 Domain of unknown function (DUF3413) DJ40_938 PF05638 Type VI secretion system effector, Hcp DJ40_943 PF00232 Glycosyl hydrolase family 1 DJ40_945 PF01380 SIS domain DJ40_945 PF01418 Helix-turn-helix domain, rpiR family DJ40_946 PF07484 Phage Tail Collar Domain DJ40_948 PF04865 Baseplate J-like protein DJ40_95 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus DJ40_95 PF01048 Phosphorylase superfamily DJ40_957 PF17482 Phage tail sheath C-terminal domain DJ40_957 PF04984 Phage tail sheath protein subtilisin-like domain DJ40_96 PF00005 ABC transporter DJ40_961 PF01261 Xylose isomerase-like TIM barrel DJ40_962 PF00455 DeoR C terminal sensor domain DJ40_962 PF08220 DeoR-like helix-turn-helix domain DJ40_963 PF00596 Class II Aldolase and Adducin N-terminal domain DJ40_964 PF17042 Nucleotide-binding C-terminal domain DJ40_964 PF07005 Sugar-binding N-terminal domain DJ40_965 PF06530 Phage antitermination protein Q DJ40_966 PF00717 Peptidase S24-like DJ40_966 PF01381 Helix-turn-helix DJ40_967 PF06183 DinI-like family DJ40_968 PF01278 Omptin family DJ40_969 PF02743 Cache domain DJ40_969 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DJ40_969 PF00672 HAMP domain DJ40_97 PF00528 Binding-protein-dependent transport system inner membrane component DJ40_970 PF12706 Beta-lactamase superfamily domain DJ40_972 PF00144 Beta-lactamase DJ40_977 PF00267 Gram-negative porin DJ40_979 PF07690 Major Facilitator Superfamily DJ40_98 PF09084 NMT1/THI5 like DJ40_980 PF16359 RcsD-ABL domain DJ40_980 PF01627 Hpt domain DJ40_980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_981 PF00196 Bacterial regulatory proteins, luxR family DJ40_981 PF00072 Response regulator receiver domain DJ40_982 PF00072 Response regulator receiver domain DJ40_982 PF09456 RcsC Alpha-Beta-Loop (ABL) DJ40_982 PF00512 His Kinase A (phospho-acceptor) domain DJ40_982 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DJ40_983 PF00521 DNA gyrase/topoisomerase IV, subunit A DJ40_983 PF03989 DNA gyrase C-terminal domain, beta-propeller DJ40_985 PF03477 ATP cone domain DJ40_985 PF02867 Ribonucleotide reductase, barrel domain DJ40_985 PF00317 Ribonucleotide reductase, all-alpha domain DJ40_986 PF00268 Ribonucleotide reductase, small chain DJ40_987 PF00111 2Fe-2S iron-sulfur cluster binding domain DJ40_988 PF03974 Ecotin DJ40_989 PF00994 Probable molybdopterin binding domain DJ40_990 PF03222 Tryptophan/tyrosine permease family DJ40_991 PF07437 YfaZ precursor DJ40_992 PF00199 Catalase DJ40_992 PF06628 Catalase-related immune-responsive DJ40_993 PF06733 DEAD_2 DJ40_993 PF13307 Helicase C-terminal domain DJ40_994 PF00267 Gram-negative porin DJ40_995 PF00892 EamA-like transporter family DJ40_997 PF01276 Orn/Lys/Arg decarboxylase, major domain DJ40_997 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DJ40_997 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DJ40_998 PF13520 Amino acid permease DJ40_999 PF00528 Binding-protein-dependent transport system inner membrane component